Query 048181
Match_columns 310
No_of_seqs 228 out of 1335
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 1.1E-44 2.3E-49 325.6 25.5 276 32-310 52-360 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 2.6E-34 5.7E-39 254.3 27.4 223 36-305 2-232 (246)
3 COG3386 Gluconolactonase [Carb 100.0 5.8E-32 1.3E-36 244.4 26.4 226 30-294 21-255 (307)
4 PLN02919 haloacid dehalogenase 99.9 3.8E-20 8.3E-25 192.3 29.2 221 31-284 565-835 (1057)
5 PF03088 Str_synth: Strictosid 99.8 1.5E-21 3.3E-26 143.6 6.3 89 143-231 1-89 (89)
6 KOG4499 Ca2+-binding protein R 99.8 4.9E-19 1.1E-23 149.4 19.4 224 37-304 18-260 (310)
7 PLN02919 haloacid dehalogenase 99.8 1.1E-17 2.4E-22 174.1 29.0 219 32-285 622-892 (1057)
8 COG4257 Vgb Streptogramin lyas 99.8 5.9E-18 1.3E-22 146.0 20.5 232 8-294 34-274 (353)
9 PF08450 SGL: SMP-30/Gluconola 99.7 1.9E-14 4.2E-19 127.1 22.0 192 24-263 34-245 (246)
10 COG4257 Vgb Streptogramin lyas 99.6 3.3E-13 7.1E-18 116.9 21.5 216 23-294 94-317 (353)
11 TIGR02604 Piru_Ver_Nterm putat 99.6 1.4E-13 3E-18 128.8 20.8 170 32-226 12-210 (367)
12 PRK11028 6-phosphogluconolacto 99.5 7.2E-11 1.6E-15 108.7 26.5 192 34-265 35-249 (330)
13 KOG4659 Uncharacterized conser 99.4 1.3E-11 2.9E-16 124.3 21.6 242 6-265 377-682 (1899)
14 PF10282 Lactonase: Lactonase, 99.4 1.1E-10 2.4E-15 108.4 26.6 225 34-289 87-332 (345)
15 PF10282 Lactonase: Lactonase, 99.4 2.7E-10 5.9E-15 105.8 26.2 225 32-293 35-313 (345)
16 PRK11028 6-phosphogluconolacto 99.4 3.9E-10 8.4E-15 103.9 26.0 208 35-285 81-310 (330)
17 TIGR02604 Piru_Ver_Nterm putat 99.4 1.3E-10 2.8E-15 108.9 21.8 209 31-265 69-341 (367)
18 KOG1214 Nidogen and related ba 99.4 5.5E-11 1.2E-15 115.5 18.5 223 27-303 1020-1248(1289)
19 COG3386 Gluconolactonase [Carb 99.3 5.1E-10 1.1E-14 101.7 21.2 196 24-266 59-278 (307)
20 COG3391 Uncharacterized conser 99.3 7.5E-09 1.6E-13 97.4 27.6 220 34-293 31-274 (381)
21 COG3391 Uncharacterized conser 99.2 1.3E-08 2.8E-13 95.9 24.6 186 34-264 74-273 (381)
22 PF07995 GSDH: Glucose / Sorbo 99.2 3.4E-09 7.4E-14 97.9 19.5 175 33-226 1-211 (331)
23 PF06977 SdiA-regulated: SdiA- 99.1 3.2E-08 7E-13 87.2 23.4 203 24-265 12-242 (248)
24 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 2.7E-07 5.9E-12 82.4 28.4 203 34-292 73-290 (300)
25 PF03022 MRJP: Major royal jel 99.1 3.7E-08 8E-13 89.1 20.8 180 96-293 3-231 (287)
26 KOG4659 Uncharacterized conser 99.0 3.4E-08 7.4E-13 100.3 21.0 217 32-286 363-629 (1899)
27 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 5.6E-07 1.2E-11 80.4 26.5 172 45-262 1-175 (300)
28 COG2706 3-carboxymuconate cycl 99.0 5.4E-07 1.2E-11 81.1 25.7 226 34-290 89-332 (346)
29 TIGR03606 non_repeat_PQQ dehyd 99.0 6.5E-08 1.4E-12 92.0 20.8 189 24-226 20-259 (454)
30 KOG1214 Nidogen and related ba 99.0 9.2E-09 2E-13 100.4 13.9 159 32-231 1066-1228(1289)
31 PF01731 Arylesterase: Arylest 98.9 3.3E-09 7.1E-14 77.7 7.4 83 143-229 1-84 (86)
32 COG2706 3-carboxymuconate cycl 98.9 2.3E-06 4.9E-11 77.2 26.0 220 23-287 29-281 (346)
33 PF05096 Glu_cyclase_2: Glutam 98.9 7.4E-07 1.6E-11 78.4 20.4 164 22-229 79-261 (264)
34 KOG1520 Predicted alkaloid syn 98.8 3.3E-08 7.2E-13 90.2 12.0 148 32-218 113-283 (376)
35 PF03022 MRJP: Major royal jel 98.8 1.4E-06 2.9E-11 78.9 21.4 197 36-264 3-255 (287)
36 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.2E-05 2.6E-10 74.4 26.4 216 22-293 88-343 (352)
37 PF06977 SdiA-regulated: SdiA- 98.8 1.4E-06 3.1E-11 76.8 19.3 175 22-227 54-248 (248)
38 COG3204 Uncharacterized protei 98.7 8.3E-06 1.8E-10 72.1 21.5 202 32-282 84-312 (316)
39 PRK04792 tolB translocation pr 98.7 2E-05 4.4E-10 75.8 26.4 205 38-294 222-437 (448)
40 TIGR02658 TTQ_MADH_Hv methylam 98.6 1.5E-06 3.2E-11 80.4 15.2 121 151-296 12-151 (352)
41 TIGR03032 conserved hypothetic 98.6 4.5E-05 9.8E-10 68.4 23.9 237 32-294 47-303 (335)
42 COG2133 Glucose/sorbosone dehy 98.6 2.1E-05 4.6E-10 73.4 22.2 185 28-220 61-260 (399)
43 PF02239 Cytochrom_D1: Cytochr 98.6 1.3E-05 2.9E-10 75.1 21.1 190 45-290 5-211 (369)
44 PRK04922 tolB translocation pr 98.6 7E-05 1.5E-09 71.8 25.8 204 37-294 207-423 (433)
45 TIGR03606 non_repeat_PQQ dehyd 98.5 1.6E-05 3.5E-10 75.8 20.0 163 91-266 27-251 (454)
46 PRK00178 tolB translocation pr 98.5 0.0002 4.4E-09 68.4 26.7 205 37-294 202-418 (430)
47 PRK04043 tolB translocation pr 98.5 0.00037 8E-09 66.5 28.1 202 38-294 192-412 (419)
48 PRK02889 tolB translocation pr 98.5 0.00023 5.1E-09 68.1 26.8 204 38-294 200-415 (427)
49 PRK05137 tolB translocation pr 98.4 0.00024 5.3E-09 68.1 26.5 205 36-291 204-421 (435)
50 cd00200 WD40 WD40 domain, foun 98.4 0.0006 1.3E-08 58.9 26.0 200 37-290 55-258 (289)
51 TIGR02800 propeller_TolB tol-p 98.4 0.00052 1.1E-08 65.1 27.0 205 38-294 194-409 (417)
52 KOG4499 Ca2+-binding protein R 98.4 1.8E-05 3.8E-10 67.9 14.2 139 40-217 115-273 (310)
53 PF02239 Cytochrom_D1: Cytochr 98.3 7.3E-05 1.6E-09 70.1 19.5 168 23-229 28-202 (369)
54 PRK03629 tolB translocation pr 98.3 0.00081 1.7E-08 64.4 27.0 203 37-294 202-418 (429)
55 PF05787 DUF839: Bacterial pro 98.3 5E-05 1.1E-09 74.2 18.0 82 137-219 347-455 (524)
56 PF07995 GSDH: Glucose / Sorbo 98.3 2.1E-05 4.5E-10 72.7 13.8 159 94-266 2-203 (331)
57 PF05096 Glu_cyclase_2: Glutam 98.2 0.00092 2E-08 59.1 22.7 187 24-262 36-249 (264)
58 COG3204 Uncharacterized protei 98.2 0.00014 3.1E-09 64.4 17.3 178 20-228 116-311 (316)
59 KOG0291 WD40-repeat-containing 98.2 0.00078 1.7E-08 66.3 23.2 164 31-238 348-516 (893)
60 PRK02888 nitrous-oxide reducta 98.2 0.00015 3.4E-09 70.9 18.3 94 179-282 296-404 (635)
61 PRK01742 tolB translocation pr 98.2 0.0018 4E-08 62.0 25.4 200 36-294 206-416 (429)
62 cd00200 WD40 WD40 domain, foun 98.2 0.0026 5.6E-08 54.9 24.2 183 35-264 95-281 (289)
63 PRK05137 tolB translocation pr 98.1 0.0023 5E-08 61.4 25.5 112 98-230 206-323 (435)
64 PF01436 NHL: NHL repeat; Int 98.1 3.6E-06 7.8E-11 48.2 3.6 28 198-226 1-28 (28)
65 PF03088 Str_synth: Strictosid 98.1 2.1E-05 4.5E-10 58.1 8.6 60 97-161 1-78 (89)
66 PF13360 PQQ_2: PQQ-like domai 98.0 0.0044 9.6E-08 53.7 22.4 188 40-286 32-235 (238)
67 KOG0315 G-protein beta subunit 98.0 0.0035 7.6E-08 54.4 20.6 218 21-291 73-298 (311)
68 PRK03629 tolB translocation pr 98.0 0.0084 1.8E-07 57.5 25.9 113 97-230 202-320 (429)
69 PF07433 DUF1513: Protein of u 98.0 0.004 8.7E-08 56.2 21.8 153 94-267 5-185 (305)
70 PF05787 DUF839: Bacterial pro 98.0 0.00015 3.2E-09 70.9 13.4 120 92-217 348-520 (524)
71 PF07433 DUF1513: Protein of u 97.9 0.0024 5.3E-08 57.6 20.0 201 40-287 57-290 (305)
72 COG3823 Glutamine cyclotransfe 97.9 0.00082 1.8E-08 56.9 15.0 113 94-227 131-257 (262)
73 PF02333 Phytase: Phytase; In 97.9 0.0086 1.9E-07 55.9 23.2 205 44-294 67-304 (381)
74 TIGR03032 conserved hypothetic 97.9 0.00069 1.5E-08 61.0 15.3 141 37-218 106-260 (335)
75 PRK01029 tolB translocation pr 97.9 0.021 4.6E-07 54.7 26.6 203 37-291 188-412 (428)
76 PRK04792 tolB translocation pr 97.8 0.014 3E-07 56.3 24.9 112 98-230 222-339 (448)
77 KOG0318 WD40 repeat stress pro 97.8 0.01 2.2E-07 56.5 22.3 187 34-267 321-510 (603)
78 PRK04922 tolB translocation pr 97.8 0.014 3E-07 56.0 23.9 113 98-230 208-325 (433)
79 PRK11138 outer membrane biogen 97.8 0.012 2.6E-07 55.6 22.8 97 178-293 265-365 (394)
80 TIGR03118 PEPCTERM_chp_1 conse 97.8 0.021 4.5E-07 51.3 22.2 222 32-295 21-293 (336)
81 TIGR03118 PEPCTERM_chp_1 conse 97.7 0.014 3E-07 52.4 20.9 192 91-292 20-240 (336)
82 KOG0291 WD40-repeat-containing 97.7 0.017 3.7E-07 57.2 22.9 215 29-295 388-626 (893)
83 smart00135 LY Low-density lipo 97.7 0.0002 4.3E-09 44.7 6.0 38 194-231 4-41 (43)
84 PRK02889 tolB translocation pr 97.6 0.044 9.5E-07 52.5 24.7 113 98-230 200-317 (427)
85 TIGR02800 propeller_TolB tol-p 97.6 0.045 9.9E-07 51.7 24.7 113 98-230 194-311 (417)
86 PRK00178 tolB translocation pr 97.6 0.053 1.1E-06 51.8 25.3 114 97-230 202-320 (430)
87 COG3211 PhoX Predicted phospha 97.6 0.00061 1.3E-08 65.5 11.4 121 92-219 415-574 (616)
88 TIGR03300 assembly_YfgL outer 97.6 0.027 5.8E-07 52.7 22.5 98 178-294 250-351 (377)
89 PF01436 NHL: NHL repeat; Int 97.6 0.00011 2.4E-09 41.9 3.9 28 33-60 1-28 (28)
90 COG2133 Glucose/sorbosone dehy 97.6 0.0035 7.6E-08 58.8 15.7 78 27-115 169-260 (399)
91 PRK04043 tolB translocation pr 97.5 0.087 1.9E-06 50.4 24.9 112 98-230 192-310 (419)
92 PF13449 Phytase-like: Esteras 97.5 0.0075 1.6E-07 55.6 16.9 106 200-308 86-225 (326)
93 KOG1446 Histone H3 (Lys4) meth 97.5 0.064 1.4E-06 48.0 25.0 81 198-292 187-273 (311)
94 PF13360 PQQ_2: PQQ-like domai 97.5 0.056 1.2E-06 46.7 24.1 101 104-229 35-140 (238)
95 PTZ00421 coronin; Provisional 97.5 0.13 2.7E-06 50.3 27.7 161 35-229 77-245 (493)
96 PRK11138 outer membrane biogen 97.4 0.012 2.7E-07 55.5 17.9 135 44-227 256-392 (394)
97 KOG1273 WD40 repeat protein [G 97.4 0.077 1.7E-06 47.8 20.2 213 32-294 64-293 (405)
98 PRK01742 tolB translocation pr 97.4 0.11 2.3E-06 49.9 23.3 112 97-230 207-325 (429)
99 PF02333 Phytase: Phytase; In 97.3 0.017 3.8E-07 53.9 15.9 139 106-265 69-229 (381)
100 PF08662 eIF2A: Eukaryotic tra 97.3 0.077 1.7E-06 45.1 18.9 112 96-230 62-180 (194)
101 PF06433 Me-amine-dh_H: Methyl 97.2 0.041 8.8E-07 50.5 17.6 156 105-286 2-171 (342)
102 KOG0318 WD40 repeat stress pro 97.2 0.11 2.4E-06 49.7 20.7 171 35-252 407-583 (603)
103 COG4946 Uncharacterized protei 97.2 0.18 3.9E-06 47.8 21.6 53 177-230 379-432 (668)
104 KOG0266 WD40 repeat-containing 97.2 0.093 2E-06 50.7 20.6 158 28-229 198-364 (456)
105 KOG0279 G protein beta subunit 97.1 0.17 3.7E-06 44.8 20.3 207 34-292 64-273 (315)
106 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.29 6.2E-06 48.3 23.5 124 44-191 69-193 (527)
107 KOG0266 WD40 repeat-containing 97.1 0.26 5.7E-06 47.6 22.9 186 37-265 163-355 (456)
108 KOG0282 mRNA splicing factor [ 97.1 0.026 5.6E-07 53.1 14.8 185 36-264 261-452 (503)
109 KOG1446 Histone H3 (Lys4) meth 97.0 0.073 1.6E-06 47.7 16.6 110 98-229 145-262 (311)
110 PF13449 Phytase-like: Esteras 96.9 0.19 4.1E-06 46.4 19.7 131 95-230 86-252 (326)
111 KOG2055 WD40 repeat protein [G 96.9 0.14 3.1E-06 48.2 18.0 155 35-230 215-375 (514)
112 KOG2106 Uncharacterized conser 96.9 0.3 6.5E-06 46.7 20.0 189 22-263 318-510 (626)
113 TIGR03300 assembly_YfgL outer 96.8 0.093 2E-06 49.1 17.2 132 47-226 243-376 (377)
114 PLN00181 protein SPA1-RELATED; 96.8 0.78 1.7E-05 47.6 27.9 163 35-230 485-649 (793)
115 PF06433 Me-amine-dh_H: Methyl 96.8 0.019 4.2E-07 52.6 11.8 119 152-293 3-138 (342)
116 cd00216 PQQ_DH Dehydrogenases 96.8 0.22 4.7E-06 48.6 19.9 200 38-266 221-459 (488)
117 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.57 1.2E-05 46.2 22.6 113 143-264 390-523 (527)
118 COG3490 Uncharacterized protei 96.7 0.087 1.9E-06 47.0 14.6 114 180-296 92-224 (366)
119 COG1520 FOG: WD40-like repeat 96.7 0.47 1E-05 44.4 20.5 197 41-292 65-279 (370)
120 PRK02888 nitrous-oxide reducta 96.7 0.29 6.2E-06 48.6 19.3 191 22-265 226-452 (635)
121 PTZ00421 coronin; Provisional 96.7 0.75 1.6E-05 45.0 23.3 160 35-230 127-291 (493)
122 COG3211 PhoX Predicted phospha 96.6 0.021 4.6E-07 55.2 10.9 128 135-266 412-576 (616)
123 PRK01029 tolB translocation pr 96.6 0.76 1.7E-05 44.1 24.2 112 100-230 191-314 (428)
124 COG0823 TolB Periplasmic compo 96.5 0.6 1.3E-05 44.7 20.2 162 100-295 244-415 (425)
125 KOG1215 Low-density lipoprotei 96.5 0.18 3.9E-06 52.9 18.1 189 35-266 438-631 (877)
126 cd00216 PQQ_DH Dehydrogenases 96.5 0.83 1.8E-05 44.6 21.5 129 39-192 57-188 (488)
127 COG3823 Glutamine cyclotransfe 96.5 0.038 8.1E-07 47.1 10.3 62 97-160 179-249 (262)
128 KOG1274 WD40 repeat protein [G 96.5 1.2 2.5E-05 45.6 22.0 200 19-265 32-253 (933)
129 KOG1274 WD40 repeat protein [G 96.4 0.68 1.5E-05 47.2 20.1 155 34-230 14-169 (933)
130 COG3292 Predicted periplasmic 96.3 0.066 1.4E-06 51.8 12.1 135 97-265 168-310 (671)
131 COG4946 Uncharacterized protei 96.3 0.52 1.1E-05 44.9 17.5 110 89-217 397-507 (668)
132 KOG0286 G-protein beta subunit 96.2 0.85 1.8E-05 40.8 27.5 232 27-293 49-315 (343)
133 KOG1539 WD repeat protein [Gen 96.2 0.41 9E-06 48.3 17.3 187 35-265 450-638 (910)
134 KOG1407 WD40 repeat protein [F 96.2 0.59 1.3E-05 41.2 16.1 188 27-261 14-206 (313)
135 KOG0772 Uncharacterized conser 96.1 0.42 9.2E-06 45.8 16.3 209 21-262 155-382 (641)
136 KOG0315 G-protein beta subunit 96.1 0.85 1.8E-05 40.0 19.1 142 46-229 11-154 (311)
137 KOG2048 WD40 repeat protein [G 96.1 1.2 2.6E-05 44.0 19.4 160 37-231 386-550 (691)
138 KOG4649 PQQ (pyrrolo-quinoline 96.0 0.98 2.1E-05 40.0 18.6 108 101-231 101-219 (354)
139 KOG0772 Uncharacterized conser 96.0 0.33 7.2E-06 46.5 15.0 212 20-265 202-430 (641)
140 PF00058 Ldl_recept_b: Low-den 96.0 0.03 6.5E-07 35.0 5.6 41 152-208 1-42 (42)
141 COG3292 Predicted periplasmic 95.9 0.3 6.4E-06 47.5 14.1 145 36-228 167-316 (671)
142 PF00930 DPPIV_N: Dipeptidyl p 95.8 1.3 2.8E-05 41.2 18.1 146 98-265 188-348 (353)
143 COG3490 Uncharacterized protei 95.7 0.79 1.7E-05 41.1 15.1 153 95-265 69-246 (366)
144 KOG1215 Low-density lipoprotei 95.7 0.36 7.8E-06 50.6 15.5 158 30-227 476-637 (877)
145 smart00135 LY Low-density lipo 95.6 0.032 6.9E-07 34.4 4.6 34 32-65 7-41 (43)
146 PRK13616 lipoprotein LpqB; Pro 95.5 3 6.6E-05 41.7 23.7 164 116-307 380-550 (591)
147 PF14583 Pectate_lyase22: Olig 95.5 0.25 5.3E-06 46.3 12.0 173 36-231 38-226 (386)
148 PF14339 DUF4394: Domain of un 95.3 0.83 1.8E-05 39.9 13.8 174 94-294 27-226 (236)
149 TIGR02276 beta_rpt_yvtn 40-res 95.3 0.099 2.1E-06 32.1 6.1 40 151-207 3-42 (42)
150 KOG0272 U4/U6 small nuclear ri 95.2 0.74 1.6E-05 43.0 13.9 186 34-263 262-449 (459)
151 KOG0279 G protein beta subunit 95.2 2.2 4.8E-05 38.0 20.8 156 33-230 105-263 (315)
152 PF00058 Ldl_recept_b: Low-den 95.1 0.11 2.4E-06 32.4 5.9 39 45-102 1-41 (42)
153 KOG0272 U4/U6 small nuclear ri 95.0 2.1 4.6E-05 40.1 16.2 199 18-263 201-407 (459)
154 COG1520 FOG: WD40-like repeat 95.0 0.94 2E-05 42.4 14.6 146 104-289 67-225 (370)
155 KOG2055 WD40 repeat protein [G 95.0 2.6 5.6E-05 40.0 16.9 139 93-259 344-497 (514)
156 KOG0278 Serine/threonine kinas 95.0 1.1 2.3E-05 39.5 13.3 132 104-264 154-287 (334)
157 KOG0268 Sof1-like rRNA process 95.0 0.2 4.3E-06 46.0 9.3 180 19-229 54-259 (433)
158 COG4247 Phy 3-phytase (myo-ino 95.0 2.4 5.2E-05 37.5 15.5 84 180-265 127-226 (364)
159 KOG0319 WD40-repeat-containing 95.0 2.3 4.9E-05 42.6 17.1 154 39-230 25-180 (775)
160 KOG0263 Transcription initiati 94.9 4.1 8.8E-05 40.9 18.7 182 37-266 455-641 (707)
161 TIGR02276 beta_rpt_yvtn 40-res 94.9 0.13 2.8E-06 31.6 5.8 41 208-251 1-42 (42)
162 PTZ00420 coronin; Provisional 94.8 1.6 3.4E-05 43.4 16.0 123 141-293 76-209 (568)
163 KOG2139 WD40 repeat protein [G 94.8 2.1 4.5E-05 39.5 15.2 143 97-265 199-366 (445)
164 smart00284 OLF Olfactomedin-li 94.7 2.9 6.3E-05 37.1 19.3 173 25-228 66-251 (255)
165 PTZ00420 coronin; Provisional 94.6 5.3 0.00011 39.8 27.8 163 30-229 71-248 (568)
166 KOG0273 Beta-transducin family 94.6 3.4 7.4E-05 39.3 16.7 143 34-223 236-383 (524)
167 KOG4378 Nuclear protein COP1 [ 94.6 2.6 5.6E-05 40.5 15.9 105 176-293 184-293 (673)
168 PF08662 eIF2A: Eukaryotic tra 94.4 2.7 5.9E-05 35.6 15.4 147 116-292 40-189 (194)
169 KOG0288 WD40 repeat protein Ti 94.4 2.2 4.9E-05 39.9 14.8 142 36-218 305-451 (459)
170 KOG0293 WD40 repeat-containing 94.2 4 8.6E-05 38.4 15.8 155 34-229 270-425 (519)
171 KOG1539 WD repeat protein [Gen 94.1 1.9 4.2E-05 43.7 14.6 147 35-226 495-645 (910)
172 KOG0271 Notchless-like WD40 re 94.0 3.9 8.4E-05 38.1 15.2 178 11-229 91-276 (480)
173 KOG0293 WD40 repeat-containing 93.8 2.4 5.2E-05 39.8 13.7 170 34-228 313-512 (519)
174 PLN00181 protein SPA1-RELATED; 93.8 9.6 0.00021 39.6 26.1 185 36-264 535-728 (793)
175 PF14269 Arylsulfotran_2: Aryl 93.8 2.5 5.3E-05 38.6 14.0 126 95-230 145-290 (299)
176 KOG0303 Actin-binding protein 93.8 4.4 9.5E-05 37.9 15.2 165 29-231 127-296 (472)
177 KOG0292 Vesicle coat complex C 93.8 9.6 0.00021 39.4 18.8 166 31-264 248-424 (1202)
178 KOG4328 WD40 protein [Function 93.7 5.4 0.00012 37.9 15.9 96 201-307 372-476 (498)
179 KOG0640 mRNA cleavage stimulat 93.5 1.5 3.3E-05 39.7 11.5 142 35-214 174-321 (430)
180 PRK13616 lipoprotein LpqB; Pro 93.4 9.5 0.00021 38.2 21.9 38 194-232 491-530 (591)
181 PF00930 DPPIV_N: Dipeptidyl p 93.4 6.6 0.00014 36.4 17.3 93 106-216 249-345 (353)
182 COG5276 Uncharacterized conser 93.3 6.1 0.00013 35.8 16.4 103 104-231 95-201 (370)
183 KOG4441 Proteins containing BT 93.1 10 0.00022 37.8 18.5 157 97-282 374-546 (571)
184 PF14269 Arylsulfotran_2: Aryl 92.9 6.5 0.00014 35.8 15.3 43 32-74 142-184 (299)
185 COG0823 TolB Periplasmic compo 92.7 1.1 2.5E-05 42.8 10.5 102 179-291 218-323 (425)
186 KOG0643 Translation initiation 92.6 4.9 0.00011 35.7 13.2 99 6-124 119-221 (327)
187 KOG0310 Conserved WD40 repeat- 92.6 3.7 8E-05 39.1 13.2 143 97-265 72-217 (487)
188 PF14517 Tachylectin: Tachylec 92.6 3.9 8.6E-05 35.6 12.6 160 34-229 34-206 (229)
189 KOG0278 Serine/threonine kinas 92.4 7.4 0.00016 34.4 16.2 107 94-225 185-293 (334)
190 KOG0289 mRNA splicing factor [ 92.1 6.8 0.00015 37.1 14.2 106 97-226 393-502 (506)
191 PF14583 Pectate_lyase22: Olig 92.1 5.7 0.00012 37.3 13.8 111 178-293 59-188 (386)
192 KOG3881 Uncharacterized conser 92.0 1.8 3.9E-05 40.1 10.2 89 174-266 221-312 (412)
193 PF14517 Tachylectin: Tachylec 92.0 2.3 5E-05 37.0 10.5 140 99-264 39-197 (229)
194 KOG2110 Uncharacterized conser 92.0 10 0.00022 35.1 19.9 141 98-265 92-239 (391)
195 KOG0282 mRNA splicing factor [ 91.4 8.3 0.00018 36.9 14.0 159 25-228 206-371 (503)
196 PF14870 PSII_BNR: Photosynthe 91.0 12 0.00026 34.1 23.4 194 23-265 7-207 (302)
197 PF01731 Arylesterase: Arylest 90.6 0.52 1.1E-05 34.5 4.4 32 91-122 51-83 (86)
198 PF02191 OLF: Olfactomedin-lik 90.5 12 0.00026 33.1 20.4 175 23-228 59-246 (250)
199 PF06739 SBBP: Beta-propeller 90.4 0.66 1.4E-05 28.2 4.1 30 26-55 5-34 (38)
200 COG4247 Phy 3-phytase (myo-ino 90.3 13 0.00027 33.1 23.5 152 43-229 65-234 (364)
201 KOG4378 Nuclear protein COP1 [ 90.0 19 0.00042 34.8 15.8 112 99-232 170-283 (673)
202 KOG0319 WD40-repeat-containing 89.8 8.8 0.00019 38.6 13.3 131 99-252 25-157 (775)
203 KOG0639 Transducin-like enhanc 89.6 5.6 0.00012 38.4 11.3 57 202-265 513-573 (705)
204 KOG0263 Transcription initiati 89.4 26 0.00056 35.4 18.2 198 34-261 379-594 (707)
205 PF05694 SBP56: 56kDa selenium 89.3 1 2.2E-05 42.8 6.3 64 199-264 312-394 (461)
206 KOG0271 Notchless-like WD40 re 88.5 22 0.00047 33.4 17.0 32 34-65 158-189 (480)
207 KOG0286 G-protein beta subunit 88.4 19 0.00041 32.5 21.1 157 29-227 141-301 (343)
208 KOG0973 Histone transcription 88.3 9.4 0.0002 39.8 12.8 105 142-269 132-244 (942)
209 KOG1009 Chromatin assembly com 88.0 14 0.0003 34.7 12.5 56 178-234 320-377 (434)
210 KOG0289 mRNA splicing factor [ 88.0 25 0.00054 33.5 18.9 139 97-262 307-450 (506)
211 KOG0294 WD40 repeat-containing 87.9 21 0.00046 32.6 19.9 100 141-264 129-228 (362)
212 KOG2106 Uncharacterized conser 87.9 28 0.0006 33.8 21.9 37 28-66 242-278 (626)
213 KOG0285 Pleiotropic regulator 87.7 24 0.00051 32.8 17.2 107 31-160 149-255 (460)
214 PHA02713 hypothetical protein; 87.5 28 0.00062 34.6 15.7 94 117-229 434-533 (557)
215 KOG4441 Proteins containing BT 87.3 20 0.00043 35.8 14.3 110 98-228 422-545 (571)
216 TIGR03074 PQQ_membr_DH membran 87.2 40 0.00087 35.0 18.4 69 45-128 194-283 (764)
217 KOG3914 WD repeat protein WDR4 87.1 9.8 0.00021 35.5 11.0 113 95-229 64-181 (390)
218 KOG0973 Histone transcription 86.1 26 0.00056 36.7 14.5 103 97-221 133-242 (942)
219 KOG0296 Angio-associated migra 85.9 29 0.00064 32.2 21.5 42 23-64 138-179 (399)
220 COG5276 Uncharacterized conser 85.4 29 0.00062 31.6 20.1 145 92-266 127-278 (370)
221 KOG0316 Conserved WD40 repeat- 85.1 26 0.00056 30.8 17.5 119 115-264 81-203 (307)
222 PF05694 SBP56: 56kDa selenium 85.0 3.7 8.1E-05 39.1 7.4 62 140-218 312-393 (461)
223 KOG2139 WD40 repeat protein [G 84.7 34 0.00074 31.9 15.8 101 142-265 198-302 (445)
224 KOG0265 U5 snRNP-specific prot 84.3 32 0.00069 31.2 17.3 169 38-229 52-246 (338)
225 KOG2321 WD40 repeat protein [G 83.8 35 0.00075 33.7 13.3 110 98-231 138-260 (703)
226 KOG3881 Uncharacterized conser 83.7 15 0.00033 34.3 10.5 132 38-211 207-344 (412)
227 KOG2394 WD40 protein DMR-N9 [G 83.0 5.1 0.00011 38.9 7.4 60 200-264 292-352 (636)
228 TIGR02171 Fb_sc_TIGR02171 Fibr 82.7 27 0.00059 36.4 12.9 26 273-298 530-555 (912)
229 PF02191 OLF: Olfactomedin-lik 82.4 35 0.00075 30.2 16.1 114 98-229 73-203 (250)
230 PF06739 SBBP: Beta-propeller 81.9 2.1 4.5E-05 26.0 3.0 20 244-265 14-33 (38)
231 KOG0299 U3 snoRNP-associated p 81.3 52 0.0011 31.5 13.4 73 141-229 382-456 (479)
232 KOG0275 Conserved WD40 repeat- 80.8 46 0.00099 30.6 17.0 37 25-62 206-242 (508)
233 PF08553 VID27: VID27 cytoplas 80.0 81 0.0017 32.9 16.6 161 30-227 477-645 (794)
234 KOG4649 PQQ (pyrrolo-quinoline 79.3 47 0.001 29.7 21.7 24 45-68 23-46 (354)
235 PHA02713 hypothetical protein; 79.0 72 0.0016 31.8 21.9 156 98-283 298-489 (557)
236 KOG2110 Uncharacterized conser 78.7 57 0.0012 30.4 18.7 113 94-229 127-248 (391)
237 PF07494 Reg_prop: Two compone 78.3 2.4 5.3E-05 22.8 2.2 17 245-263 7-23 (24)
238 TIGR02608 delta_60_rpt delta-6 76.8 7.1 0.00015 25.9 4.5 42 246-290 4-45 (55)
239 PF05935 Arylsulfotrans: Aryls 76.4 78 0.0017 30.8 14.8 70 222-294 386-469 (477)
240 PF02897 Peptidase_S9_N: Proly 76.3 69 0.0015 30.1 18.2 120 98-230 128-261 (414)
241 PF10647 Gmad1: Lipoprotein Lp 75.9 56 0.0012 28.8 21.7 167 35-231 25-199 (253)
242 KOG0649 WD40 repeat protein [G 75.7 57 0.0012 28.9 15.8 86 95-202 116-201 (325)
243 PRK14131 N-acetylneuraminic ac 75.7 70 0.0015 29.9 21.1 50 179-229 189-246 (376)
244 PF05935 Arylsulfotrans: Aryls 75.4 26 0.00056 34.2 10.0 105 179-293 128-243 (477)
245 KOG1273 WD40 repeat protein [G 75.2 68 0.0015 29.5 11.7 52 177-229 43-95 (405)
246 KOG1272 WD40-repeat-containing 75.1 69 0.0015 30.9 12.1 31 34-64 130-160 (545)
247 KOG0645 WD40 repeat protein [G 75.0 63 0.0014 29.0 17.3 156 33-225 61-223 (312)
248 PHA02790 Kelch-like protein; P 74.9 86 0.0019 30.5 16.9 98 104-229 361-470 (480)
249 KOG2048 WD40 repeat protein [G 74.9 98 0.0021 31.2 23.4 30 34-64 70-99 (691)
250 KOG0299 U3 snoRNP-associated p 74.7 82 0.0018 30.2 18.3 61 200-264 382-446 (479)
251 KOG0650 WD40 repeat nucleolar 74.2 25 0.00054 34.8 9.2 149 35-226 523-677 (733)
252 KOG0283 WD40 repeat-containing 74.0 40 0.00086 34.3 10.9 109 97-230 373-482 (712)
253 KOG0296 Angio-associated migra 74.0 77 0.0017 29.6 22.7 138 98-265 111-254 (399)
254 KOG0646 WD40 repeat protein [G 73.7 87 0.0019 30.1 17.5 185 37-264 85-297 (476)
255 PF00400 WD40: WD domain, G-be 73.7 14 0.00029 21.6 5.1 31 31-61 9-39 (39)
256 KOG0283 WD40 repeat-containing 72.6 1.2E+02 0.0026 31.1 15.5 157 35-230 411-577 (712)
257 KOG0273 Beta-transducin family 72.2 97 0.0021 29.9 15.0 142 94-264 236-379 (524)
258 smart00284 OLF Olfactomedin-li 72.1 72 0.0016 28.4 15.6 113 98-230 78-209 (255)
259 KOG1963 WD40 repeat protein [G 72.1 48 0.001 34.0 11.0 66 88-154 286-360 (792)
260 KOG0275 Conserved WD40 repeat- 71.6 84 0.0018 28.9 12.8 143 34-216 349-496 (508)
261 KOG0646 WD40 repeat protein [G 71.4 78 0.0017 30.4 11.5 131 13-190 164-310 (476)
262 PF11768 DUF3312: Protein of u 71.4 40 0.00086 33.2 10.0 79 23-125 252-331 (545)
263 PLN00033 photosystem II stabil 70.7 99 0.0021 29.4 18.0 98 39-159 244-346 (398)
264 KOG0641 WD40 repeat protein [G 70.7 72 0.0016 27.8 18.5 73 141-231 233-305 (350)
265 KOG1538 Uncharacterized conser 69.9 1.1E+02 0.0025 31.0 12.7 66 139-224 12-78 (1081)
266 KOG3914 WD repeat protein WDR4 69.0 1E+02 0.0022 28.9 11.9 111 94-229 108-223 (390)
267 PHA03098 kelch-like protein; P 68.5 1.2E+02 0.0027 29.6 22.5 167 98-293 337-522 (534)
268 PF00400 WD40: WD domain, G-be 68.1 21 0.00046 20.7 5.4 28 199-227 12-39 (39)
269 KOG1408 WD40 repeat protein [F 67.8 1.3E+02 0.0027 31.0 12.5 114 96-229 599-713 (1080)
270 PRK13684 Ycf48-like protein; P 66.3 1.1E+02 0.0024 28.2 25.1 39 24-64 37-75 (334)
271 KOG0307 Vesicle coat complex C 66.1 1.1E+02 0.0024 32.6 12.3 148 38-221 69-229 (1049)
272 KOG0310 Conserved WD40 repeat- 65.7 1.3E+02 0.0029 29.0 21.0 161 98-294 115-281 (487)
273 PF08309 LVIVD: LVIVD repeat; 65.7 19 0.00042 22.4 4.5 28 95-124 3-30 (42)
274 COG4222 Uncharacterized protei 64.5 58 0.0013 30.9 9.3 17 200-216 201-217 (391)
275 smart00564 PQQ beta-propeller 62.5 15 0.00033 20.7 3.5 25 104-128 5-29 (33)
276 KOG3567 Peptidylglycine alpha- 61.9 12 0.00026 35.8 4.3 35 240-284 464-498 (501)
277 PLN00033 photosystem II stabil 61.7 1.5E+02 0.0032 28.2 21.5 61 200-265 282-348 (398)
278 KOG0645 WD40 repeat protein [G 61.6 1.2E+02 0.0027 27.2 22.2 165 28-229 9-180 (312)
279 TIGR02171 Fb_sc_TIGR02171 Fibr 61.3 59 0.0013 34.1 9.4 86 178-266 328-423 (912)
280 KOG0265 U5 snRNP-specific prot 61.3 67 0.0014 29.2 8.6 61 202-265 51-111 (338)
281 KOG1408 WD40 repeat protein [F 61.1 97 0.0021 31.7 10.4 124 117-264 60-185 (1080)
282 TIGR03803 Gloeo_Verruco Gloeo_ 61.0 26 0.00056 20.8 4.2 31 151-194 1-31 (34)
283 PF11768 DUF3312: Protein of u 60.9 27 0.00059 34.3 6.6 51 177-229 279-329 (545)
284 KOG0281 Beta-TrCP (transducin 59.7 1.5E+02 0.0033 27.6 10.7 112 94-230 278-389 (499)
285 PF13570 PQQ_3: PQQ-like domai 59.3 18 0.00039 21.7 3.6 25 98-124 16-40 (40)
286 KOG0918 Selenium-binding prote 59.1 82 0.0018 29.9 9.1 32 200-231 390-436 (476)
287 PRK13684 Ycf48-like protein; P 58.4 1.5E+02 0.0033 27.2 21.1 59 94-159 173-233 (334)
288 KOG1036 Mitotic spindle checkp 58.1 1.5E+02 0.0032 27.0 10.7 29 97-125 17-45 (323)
289 PF07676 PD40: WD40-like Beta 57.7 32 0.0007 20.2 4.5 19 202-220 12-30 (39)
290 KOG0306 WD40-repeat-containing 57.6 2.3E+02 0.0051 29.2 17.5 199 24-268 364-574 (888)
291 KOG0268 Sof1-like rRNA process 57.6 51 0.0011 30.7 7.4 115 94-228 230-346 (433)
292 KOG0284 Polyadenylation factor 56.4 1.4E+02 0.003 28.4 10.0 150 36-229 141-294 (464)
293 KOG0771 Prolactin regulatory e 56.1 1.8E+02 0.004 27.5 12.2 189 37-261 148-341 (398)
294 KOG2096 WD40 repeat protein [G 55.6 1.7E+02 0.0037 27.0 18.9 170 105-291 197-393 (420)
295 KOG0264 Nucleosome remodeling 55.2 1.5E+02 0.0033 28.2 10.3 71 142-229 275-347 (422)
296 PF14870 PSII_BNR: Photosynthe 55.0 1.7E+02 0.0037 26.7 20.6 144 93-265 103-253 (302)
297 PF01011 PQQ: PQQ enzyme repea 54.5 21 0.00045 21.3 3.2 22 106-127 1-22 (38)
298 COG4993 Gcd Glucose dehydrogen 53.5 2.4E+02 0.0052 28.6 11.6 33 99-131 392-442 (773)
299 KOG0284 Polyadenylation factor 53.2 2.1E+02 0.0045 27.3 12.2 149 36-227 99-249 (464)
300 KOG4328 WD40 protein [Function 52.3 1.6E+02 0.0035 28.4 9.9 160 36-229 189-353 (498)
301 KOG2919 Guanine nucleotide-bin 52.1 1E+02 0.0023 28.4 8.4 47 181-229 135-187 (406)
302 PHA03098 kelch-like protein; P 50.8 2.5E+02 0.0054 27.4 18.3 109 104-229 388-511 (534)
303 KOG0288 WD40 repeat protein Ti 50.6 2.3E+02 0.005 27.0 17.0 121 139-292 302-428 (459)
304 KOG3545 Olfactomedin and relat 50.6 1.8E+02 0.0039 25.7 15.3 175 24-228 59-245 (249)
305 KOG1407 WD40 repeat protein [F 50.4 1.9E+02 0.0041 26.0 19.5 105 31-160 62-167 (313)
306 TIGR03074 PQQ_membr_DH membran 50.3 3.2E+02 0.0069 28.5 20.6 88 105-193 316-428 (764)
307 KOG0306 WD40-repeat-containing 50.3 3.1E+02 0.0067 28.4 15.1 160 20-227 498-662 (888)
308 PF15390 DUF4613: Domain of un 48.7 1.3E+02 0.0028 30.2 9.0 67 193-261 333-401 (671)
309 KOG2111 Uncharacterized conser 48.1 2.2E+02 0.0049 26.1 16.5 170 92-293 132-324 (346)
310 COG4246 Uncharacterized protei 46.6 2.2E+02 0.0048 25.6 11.1 28 201-230 137-164 (340)
311 KOG0316 Conserved WD40 repeat- 46.4 2.1E+02 0.0046 25.3 12.7 130 44-216 154-288 (307)
312 KOG0313 Microtubule binding pr 45.1 2.7E+02 0.0059 26.2 15.2 175 32-231 192-378 (423)
313 KOG1445 Tumor-specific antigen 44.6 2.8E+02 0.006 28.2 10.5 119 93-229 720-844 (1012)
314 PHA02790 Kelch-like protein; P 44.2 3.1E+02 0.0067 26.6 19.7 146 104-282 317-470 (480)
315 PF04053 Coatomer_WDAD: Coatom 44.1 2.9E+02 0.0064 26.7 10.8 50 179-229 126-175 (443)
316 KOG2321 WD40 repeat protein [G 43.9 3.5E+02 0.0075 27.1 12.6 111 94-227 229-341 (703)
317 KOG0640 mRNA cleavage stimulat 43.6 2.7E+02 0.0058 25.7 11.4 149 37-223 265-420 (430)
318 KOG3545 Olfactomedin and relat 42.5 2E+02 0.0044 25.4 8.5 96 105-220 77-189 (249)
319 KOG4547 WD40 repeat-containing 41.7 3.6E+02 0.0078 26.7 13.0 103 176-294 77-185 (541)
320 PF10647 Gmad1: Lipoprotein Lp 41.3 2.5E+02 0.0053 24.7 21.3 161 95-289 25-204 (253)
321 KOG0647 mRNA export protein (c 41.3 2.8E+02 0.0062 25.4 12.9 155 20-215 146-309 (347)
322 PF12894 Apc4_WD40: Anaphase-p 39.7 77 0.0017 20.1 4.2 29 202-231 15-43 (47)
323 COG4590 ABC-type uncharacteriz 39.5 2.3E+02 0.005 27.6 8.9 30 199-230 358-387 (733)
324 KOG2096 WD40 repeat protein [G 39.2 3.2E+02 0.0069 25.3 14.4 71 213-291 201-271 (420)
325 KOG0295 WD40 repeat-containing 38.6 3.4E+02 0.0074 25.5 15.3 54 176-230 311-365 (406)
326 KOG0285 Pleiotropic regulator 38.3 3.5E+02 0.0075 25.5 15.6 37 27-63 187-223 (460)
327 KOG1963 WD40 repeat protein [G 37.3 5E+02 0.011 27.1 15.2 153 38-230 210-376 (792)
328 KOG0639 Transducin-like enhanc 37.3 4.2E+02 0.0091 26.2 11.5 110 97-231 513-624 (705)
329 KOG1009 Chromatin assembly com 36.8 3.8E+02 0.0082 25.5 10.9 63 199-267 124-188 (434)
330 KOG0918 Selenium-binding prote 36.7 1.6E+02 0.0034 28.1 7.2 31 202-232 315-345 (476)
331 PF02897 Peptidase_S9_N: Proly 36.5 3.6E+02 0.0078 25.2 22.6 151 117-294 204-370 (414)
332 KOG2919 Guanine nucleotide-bin 35.3 3.7E+02 0.008 25.0 14.2 57 201-261 210-268 (406)
333 KOG1063 RNA polymerase II elon 35.0 5.1E+02 0.011 26.5 11.3 107 34-159 268-380 (764)
334 PRK10115 protease 2; Provision 34.4 5.3E+02 0.011 26.5 15.2 76 139-231 126-209 (686)
335 COG4447 Uncharacterized protei 34.3 3.6E+02 0.0078 24.5 9.9 41 23-64 33-73 (339)
336 KOG4532 WD40-like repeat conta 33.5 3.7E+02 0.0079 24.4 12.6 53 177-231 138-190 (344)
337 KOG0641 WD40 repeat protein [G 33.4 3.3E+02 0.0072 23.8 9.8 30 36-65 234-263 (350)
338 TIGR03548 mutarot_permut cycli 31.4 3.9E+02 0.0085 24.1 12.7 112 105-230 72-195 (323)
339 KOG4640 Anaphase-promoting com 29.9 1.2E+02 0.0026 30.4 5.6 43 21-64 51-93 (665)
340 KOG1188 WD40 repeat protein [G 29.9 4.1E+02 0.0089 24.7 8.6 54 177-230 48-103 (376)
341 KOG0313 Microtubule binding pr 29.3 5E+02 0.011 24.6 15.7 111 27-160 254-366 (423)
342 PF08268 FBA_3: F-box associat 28.7 1.8E+02 0.0039 22.3 5.7 55 247-310 1-57 (129)
343 PF14977 FAM194: FAM194 protei 28.7 3.8E+02 0.0082 23.0 11.8 35 246-291 69-103 (208)
344 KOG0322 G-protein beta subunit 28.6 1.3E+02 0.0028 27.0 5.1 66 142-226 254-320 (323)
345 PF15492 Nbas_N: Neuroblastoma 27.2 1.1E+02 0.0025 27.4 4.6 30 200-230 45-74 (282)
346 KOG0308 Conserved WD40 repeat- 27.0 6.9E+02 0.015 25.5 11.1 112 98-229 122-243 (735)
347 KOG0771 Prolactin regulatory e 26.3 5.7E+02 0.012 24.3 12.6 72 139-229 281-354 (398)
348 COG4993 Gcd Glucose dehydrogen 26.2 3.5E+02 0.0076 27.5 8.0 24 105-128 214-237 (773)
349 KOG1036 Mitotic spindle checkp 26.0 5.2E+02 0.011 23.7 15.5 76 35-131 15-91 (323)
350 KOG4497 Uncharacterized conser 25.6 5.5E+02 0.012 23.9 11.2 89 200-294 93-201 (447)
351 KOG3567 Peptidylglycine alpha- 25.2 89 0.0019 30.1 3.7 51 179-230 445-497 (501)
352 PF05567 Neisseria_PilC: Neiss 24.8 1.2E+02 0.0026 28.1 4.6 53 178-231 180-241 (335)
353 KOG3611 Semaphorins [Signal tr 24.7 7.2E+02 0.016 25.9 10.4 98 9-123 381-492 (737)
354 PF14339 DUF4394: Domain of un 24.1 5E+02 0.011 22.8 21.2 79 35-127 28-107 (236)
355 KOG0264 Nucleosome remodeling 24.0 3.8E+02 0.0082 25.6 7.6 73 141-230 229-304 (422)
356 COG4222 Uncharacterized protei 23.9 4.3E+02 0.0094 25.1 8.0 25 135-159 64-89 (391)
357 TIGR03547 muta_rot_YjhT mutatr 23.7 5.5E+02 0.012 23.3 21.0 49 179-229 168-225 (346)
358 PRK13614 lipoprotein LpqB; Pro 23.6 5.4E+02 0.012 25.9 9.1 56 201-265 345-403 (573)
359 KOG0303 Actin-binding protein 23.4 5.2E+02 0.011 24.7 8.2 82 178-265 153-237 (472)
360 KOG4227 WD40 repeat protein [G 22.2 6.9E+02 0.015 23.8 16.8 147 97-265 109-265 (609)
361 PF15416 DUF4623: Domain of un 22.2 2.5E+02 0.0053 26.2 5.8 68 209-278 142-225 (442)
362 KOG0322 G-protein beta subunit 22.1 2.6E+02 0.0057 25.1 5.8 29 200-229 253-281 (323)
363 KOG2315 Predicted translation 22.1 7.9E+02 0.017 24.4 17.1 108 97-231 274-392 (566)
364 TIGR03548 mutarot_permut cycli 22.0 5.8E+02 0.013 22.9 20.7 74 105-195 123-202 (323)
365 KOG2394 WD40 protein DMR-N9 [G 21.8 1.6E+02 0.0035 29.0 4.8 68 141-227 292-360 (636)
366 PLN02193 nitrile-specifier pro 21.7 7.3E+02 0.016 23.9 19.2 111 104-230 227-352 (470)
367 PRK13615 lipoprotein LpqB; Pro 21.4 8.3E+02 0.018 24.5 11.3 55 201-265 336-393 (557)
368 PF13970 DUF4221: Domain of un 20.6 3.2E+02 0.0069 25.0 6.5 84 200-294 43-135 (333)
369 KOG0300 WD40 repeat-containing 20.1 7E+02 0.015 23.1 14.3 134 142-304 317-451 (481)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=325.60 Aligned_cols=276 Identities=40% Similarity=0.691 Sum_probs=241.2
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCeEEEEECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181 32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI 110 (310)
Q Consensus 32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV 110 (310)
.+.+||.+++|+.|.=-++...+++|.++... .+++.++..........|.+......++.|++|.||+++...|.|||
T Consensus 52 ~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~V 131 (376)
T KOG1520|consen 52 HLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYV 131 (376)
T ss_pred ccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEE
Confidence 47899999999876446788889999999876 56777665422222334554333455788999999999966669999
Q ss_pred EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181 111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ 190 (310)
Q Consensus 111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~ 190 (310)
||++.|+++|++++++.+.+....+|+++.+.|++.|++ +|.+||||++..|++++++.++++.+++||+++||+.+..
T Consensus 132 aDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~ 210 (376)
T KOG1520|consen 132 ADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKV 210 (376)
T ss_pred EecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccc
Confidence 999999999999999888888889999999999999999 6999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCCC
Q 048181 191 VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQP 268 (310)
Q Consensus 191 ~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~ 268 (310)
++++.+++.+|||+++|+|++++.+||+...||.||++.|+++|+.++ .++||+||||+.++ +|++|||.+..++.
T Consensus 211 ~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~--~G~fWVal~~~~~~ 288 (376)
T KOG1520|consen 211 TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDS--TGHFWVALHSKRST 288 (376)
T ss_pred hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECC--CCCEEEEEecccch
Confidence 999999999999999999999999999999999999999999999998 56999999999999 99999999888754
Q ss_pred C-------C-----------------------CCceeeEEECCCCcEEEEEecCCCccccceeEEEecCCCC
Q 048181 269 A-------G-----------------------TPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310 (310)
Q Consensus 269 ~-------~-----------------------~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~~~~l 310 (310)
+ | .+|..|.+.|.+|++++++|++.++++..+++|.|++|+|
T Consensus 289 ~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~L 360 (376)
T KOG1520|consen 289 LWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHL 360 (376)
T ss_pred HHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeE
Confidence 2 1 1346677888999999999999999999999999999986
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=100.00 E-value=2.6e-34 Score=254.30 Aligned_cols=223 Identities=24% Similarity=0.353 Sum_probs=175.9
Q ss_pred cceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181 36 GESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY 114 (310)
Q Consensus 36 Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~ 114 (310)
|||++||+ +|+|||+|+.+++|+|++++++...+.. ...|.|++++.++|+||||+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---------------------~~~~~G~~~~~~~g~l~v~~~~ 60 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---------------------LPGPNGMAFDRPDGRLYVADSG 60 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---------------------SSSEEEEEEECTTSEEEEEETT
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---------------------cCCCceEEEEccCCEEEEEEcC
Confidence 89999997 7999999999999999999977644321 1229999997568999999875
Q ss_pred CcEEEEeCCCCeEEEeeccCCCc-cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181 115 SGLLVVGPNGRLATQLATGAEGQ-AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV 193 (310)
Q Consensus 115 ~gi~~id~~~~~~~~~~~~~~g~-~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~ 193 (310)
++..+|+++++++.+.....+. ++..|||+++++ +|+|||||+...... ....|+||+++++ ++++.
T Consensus 61 -~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 61 -GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp -CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEE
T ss_pred -ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccc---------cccccceEEECCC-CeEEE
Confidence 5677799999888877664444 789999999999 599999998642110 0111899999998 88999
Q ss_pred eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCC--Cceee-ecC---CCCCceeeeCCCCCCcEEEEEecCCC
Q 048181 194 LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRA--NSFDI-INF---QAKPHNIKRNPGLLQTFWEAAIITRQ 267 (310)
Q Consensus 194 ~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~--g~~~~-~~l---~g~Pdgl~~d~~~dG~l~va~~~~~~ 267 (310)
+.+++..||||+|+|||++|||+++.+++|++|+++.+.. ...++ ..+ .+.||||++|+ +|+||||++..
T Consensus 129 ~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~--~G~l~va~~~~-- 204 (246)
T PF08450_consen 129 VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS--DGNLWVADWGG-- 204 (246)
T ss_dssp EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT--TS-EEEEEETT--
T ss_pred EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC--CCCEEEEEcCC--
Confidence 9999999999999999999999999999999999985421 12232 333 34699999999 99999999976
Q ss_pred CCCCCceeeEEECCCCcEEEEEecCCCccccceeEEEe
Q 048181 268 PAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQP 305 (310)
Q Consensus 268 ~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~ 305 (310)
.+|.++||+|+++..|.+|.. .+|.++=
T Consensus 205 ------~~I~~~~p~G~~~~~i~~p~~----~~t~~~f 232 (246)
T PF08450_consen 205 ------GRIVVFDPDGKLLREIELPVP----RPTNCAF 232 (246)
T ss_dssp ------TEEEEEETTSCEEEEEE-SSS----SEEEEEE
T ss_pred ------CEEEEECCCccEEEEEcCCCC----CEEEEEE
Confidence 489999999999999999944 5666553
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-32 Score=244.43 Aligned_cols=226 Identities=23% Similarity=0.279 Sum_probs=172.8
Q ss_pred CCCCCCcceEEEccCC-CEEEEEeCCCeEEEEECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181 30 PPKAFGGESIAFEPVG-GAFYTGVADGRILKYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ 107 (310)
Q Consensus 30 ~~~~~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~ 107 (310)
..+..-.||++|+++. .|||+|+..++|+|+++. ++.+++.. ....+.++.++ +.|+
T Consensus 21 ~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~--------------------p~~~~~~~~~d-~~g~ 79 (307)
T COG3386 21 DKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS--------------------PGGFSSGALID-AGGR 79 (307)
T ss_pred ecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC--------------------CCCcccceeec-CCCe
Confidence 3345679999999985 599999999999999997 44555532 22346788887 7888
Q ss_pred EEEEeCCCcEEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181 108 LYIADAYSGLLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP 186 (310)
Q Consensus 108 LyVad~~~gi~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~ 186 (310)
|++|+.+ +.+++++.+.. +.++...++.+.++|||+.++++ |++||+|+.+ +. ....+..+.|+|||+||
T Consensus 80 Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p 150 (307)
T COG3386 80 LIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGY-FD-----LGKSEERPTGSLYRVDP 150 (307)
T ss_pred EEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcCC-CCEEEeCCCc-cc-----cCccccCCcceEEEEcC
Confidence 8888654 55555454444 67777777888999999999995 9999999983 11 01123456789999999
Q ss_pred CCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec---CCCCCce-ee--ecCCCCCceeeeCCCCCCcEEE
Q 048181 187 RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR---GPRANSF-DI--INFQAKPHNIKRNPGLLQTFWE 260 (310)
Q Consensus 187 ~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~---~~~~g~~-~~--~~l~g~Pdgl~~d~~~dG~l~v 260 (310)
.++..+.+.+.+..||||||||||++||++||..++|++|+++ +...+.. .+ ...+|.|||+++|+ +|+||+
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa--dG~lw~ 228 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA--DGNLWV 228 (307)
T ss_pred CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC--CCCEEE
Confidence 6444444444599999999999999999999999999999987 3322322 12 33579999999999 999996
Q ss_pred EEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 261 AAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 261 a~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
+..... .+|.+|+|+|+.+..+.+|..
T Consensus 229 ~a~~~g-------~~v~~~~pdG~l~~~i~lP~~ 255 (307)
T COG3386 229 AAVWGG-------GRVVRFNPDGKLLGEIKLPVK 255 (307)
T ss_pred ecccCC-------ceEEEECCCCcEEEEEECCCC
Confidence 544431 379999999999999999974
No 4
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.88 E-value=3.8e-20 Score=192.34 Aligned_cols=221 Identities=15% Similarity=0.133 Sum_probs=155.0
Q ss_pred CCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeee-cCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181 31 PKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFT-TPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL 108 (310)
Q Consensus 31 ~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L 108 (310)
..+..|.++++|+. |++|++|..+++|++++.++........ ++.++ .+|. .....+.+|.||++++.++.|
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~---~dG~---~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGL---RDGS---FEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCC---CCCc---hhccccCCCcEEEEeCCCCEE
Confidence 45789999999974 7899999999999999999876443321 11110 1111 012356789999998545679
Q ss_pred EEEeCCC-cEEEEeCCCCeEEEeecc------CCC------ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 109 YIADAYS-GLLVVGPNGRLATQLATG------AEG------QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 109 yVad~~~-gi~~id~~~~~~~~~~~~------~~g------~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
||+|..+ .|.++|..++.+++++.. ..+ ..++.|.++++++++|++||+|..+
T Consensus 639 YVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~-------------- 704 (1057)
T PLN02919 639 YVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ-------------- 704 (1057)
T ss_pred EEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC--------------
Confidence 9999875 488899988887776532 111 2378899999999669999999764
Q ss_pred CCCceEEEEcCCCCeEEEee---------------cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce----
Q 048181 176 DSTGRLLSYNPRSSQVTVLL---------------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF---- 236 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~~~---------------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~---- 236 (310)
++|+++|..++.+..+. ..+..|+||+++|||++|||+++.+++|++|++++......
T Consensus 705 ---~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 705 ---HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred ---CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 34555555444433221 23568999999999999999999999999999864210000
Q ss_pred --------ee---e-----cCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCc
Q 048181 237 --------DI---I-----NFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGA 284 (310)
Q Consensus 237 --------~~---~-----~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~ 284 (310)
.. . .....|.|+++++ +|++||++.... +|.++|+++.
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~--dG~LYVADs~N~--------rIrviD~~tg 835 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK--DGQIYVADSYNH--------KIKKLDPATK 835 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeC--CCcEEEEECCCC--------EEEEEECCCC
Confidence 00 0 0113599999999 999999998874 5666666543
No 5
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.85 E-value=1.5e-21 Score=143.56 Aligned_cols=89 Identities=53% Similarity=0.823 Sum_probs=74.1
Q ss_pred cceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCe
Q 048181 143 DGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNR 222 (310)
Q Consensus 143 ndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~ 222 (310)
||++|++++|.|||||++..|..++++.++++..++|+|++|||.+++++++.+++.+||||++++|+++|+|+|+...|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 79999995599999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC
Q 048181 223 TLKYWLRGP 231 (310)
Q Consensus 223 I~~~~~~~~ 231 (310)
|.||++.||
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999874
No 6
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.83 E-value=4.9e-19 Score=149.39 Aligned_cols=224 Identities=16% Similarity=0.172 Sum_probs=148.9
Q ss_pred ceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC--eEEEEeC
Q 048181 37 ESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR--QLYIADA 113 (310)
Q Consensus 37 egia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g--~LyVad~ 113 (310)
||+.|+.+ +.|||+|+..+.|+|++-......-+.. ++ + -..|..+- -.| ..|++-.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~i---------e~-------p---~~ag~ilp-v~~~~q~~~v~~ 77 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKI---------EG-------P---PSAGFILP-VEGGPQEFAVGC 77 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEE---------ec-------C---cceeEEEE-ecCCCceEEEee
Confidence 89999965 7899999999999998876432211100 00 0 01233332 222 3444433
Q ss_pred CCc--EEEEeCCCCeEEEeec---cCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181 114 YSG--LLVVGPNGRLATQLAT---GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS 188 (310)
Q Consensus 114 ~~g--i~~id~~~~~~~~~~~---~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~ 188 (310)
+.. |...|-......++.+ ......-++.||..+|| +|+.|...+... . ..++ ...|.||++-+.
T Consensus 78 G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~-~------~~le-~~~g~Ly~~~~~- 147 (310)
T KOG4499|consen 78 GSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADF-G------DDLE-PIGGELYSWLAG- 147 (310)
T ss_pred cceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccc-c------cccc-ccccEEEEeccC-
Confidence 332 4444422222222222 22233467889999999 599998776531 0 1122 124677777764
Q ss_pred CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC--CCCcee-ee---c----CCCCCceeeeCCCCCCcE
Q 048181 189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP--RANSFD-II---N----FQAKPHNIKRNPGLLQTF 258 (310)
Q Consensus 189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~--~~g~~~-~~---~----l~g~Pdgl~~d~~~dG~l 258 (310)
++++..+..+..+|||+||.|.+.+|+.|+.+..|..|+++-+ .....+ +. . .+-.||||++|. +|+|
T Consensus 148 h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~--eG~L 225 (310)
T KOG4499|consen 148 HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT--EGNL 225 (310)
T ss_pred CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc--CCcE
Confidence 8899999999999999999999999999999999966665532 222221 11 1 124799999999 9999
Q ss_pred EEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCCCccccceeEEE
Q 048181 259 WEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEAQYSTTPISEVQ 304 (310)
Q Consensus 259 ~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~~~~~~~~t~~~ 304 (310)
|||++++ +.|+++|| .||++..+.+|.. +||+++
T Consensus 226 ~Va~~ng--------~~V~~~dp~tGK~L~eiklPt~----qitscc 260 (310)
T KOG4499|consen 226 YVATFNG--------GTVQKVDPTTGKILLEIKLPTP----QITSCC 260 (310)
T ss_pred EEEEecC--------cEEEEECCCCCcEEEEEEcCCC----ceEEEE
Confidence 9999998 48999998 5999999999954 666654
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.82 E-value=1.1e-17 Score=174.11 Aligned_cols=219 Identities=11% Similarity=0.148 Sum_probs=152.4
Q ss_pred CCCCcceEEEccCCC-EEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181 32 KAFGGESIAFEPVGG-AFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY 109 (310)
Q Consensus 32 ~~~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly 109 (310)
.|..|.||+++++++ +|++|..+++|++++..++. ++++..+.... ...+|. .........|.++++++.+++||
T Consensus 622 ~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~-~~~gg~--~~~~~~ln~P~gVa~dp~~g~Ly 698 (1057)
T PLN02919 622 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGS-DYQGGK--KGTSQVLNSPWDVCFEPVNEKVY 698 (1057)
T ss_pred ccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccC-CCCCCh--hhhHhhcCCCeEEEEecCCCeEE
Confidence 467899999999876 78888889999999987554 45543221110 001110 00112356899999985589999
Q ss_pred EEeCCC-cEEEEeCCCCeEEEeeccC-----C-----CccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181 110 IADAYS-GLLVVGPNGRLATQLATGA-----E-----GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST 178 (310)
Q Consensus 110 Vad~~~-gi~~id~~~~~~~~~~~~~-----~-----g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~ 178 (310)
|+|..+ .|++++..++.+..+.... . ...+..|++|+++++++.|||+|..+
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n----------------- 761 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES----------------- 761 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----------------
Confidence 999864 4999999887765553211 1 12467899999999644599999754
Q ss_pred ceEEEEcCCCCeEEEee----------------------cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce
Q 048181 179 GRLLSYNPRSSQVTVLL----------------------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF 236 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~----------------------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~ 236 (310)
++|.++|.+++....+. ..+..|.||+++++|+ |||+++.+++|.+|+.++. ..
T Consensus 762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg---~v 837 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATK---RV 837 (1057)
T ss_pred CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCC---eE
Confidence 46777776655433221 1245799999999997 9999999999999998643 11
Q ss_pred e-e---------------ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC-CcE
Q 048181 237 D-I---------------INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF-GAV 285 (310)
Q Consensus 237 ~-~---------------~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~-G~~ 285 (310)
. + ..+ ..|.||++++ +|++||++.... +|.++|.+ +++
T Consensus 838 ~tiaG~G~~G~~dG~~~~a~l-~~P~GIavd~--dG~lyVaDt~Nn--------~Irvid~~~~~~ 892 (1057)
T PLN02919 838 TTLAGTGKAGFKDGKALKAQL-SEPAGLALGE--NGRLFVADTNNS--------LIRYLDLNKGEA 892 (1057)
T ss_pred EEEeccCCcCCCCCccccccc-CCceEEEEeC--CCCEEEEECCCC--------EEEEEECCCCcc
Confidence 1 1 111 2699999999 999999998774 78888865 444
No 8
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.81 E-value=5.9e-18 Score=145.98 Aligned_cols=232 Identities=17% Similarity=0.188 Sum_probs=174.7
Q ss_pred hhhhhcCCceeee---ecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCC
Q 048181 8 FVFVFSLPRMVFS---IPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDG 83 (310)
Q Consensus 8 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g 83 (310)
+++.|+.|-|..+ -.+...+++|.. ..|..++.++||.+||.+...+-|-+++|..+ .+++.
T Consensus 34 l~G~~a~~A~gs~pa~~~s~~~fpvp~G-~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp------------- 99 (353)
T COG4257 34 LIGEFATPAAGSSPAPDGSSAEFPVPNG-SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP------------- 99 (353)
T ss_pred hhccccchhhcCCCCCCCccceeccCCC-CCccccccCCCCceEEecCccccceecCCCCCceEEEe-------------
Confidence 4555555555444 456777888843 57999999999999999999999999999855 44443
Q ss_pred CccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCcc
Q 048181 84 TTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVY 163 (310)
Q Consensus 84 ~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~ 163 (310)
.....+|+|+.++ .+|..||||....|.++|+++.+.+.+.-..+ ..-...|-..+|++ |+||||....
T Consensus 100 ------Lg~Ga~Phgiv~g-pdg~~Witd~~~aI~R~dpkt~evt~f~lp~~-~a~~nlet~vfD~~-G~lWFt~q~G-- 168 (353)
T COG4257 100 ------LGSGASPHGIVVG-PDGSAWITDTGLAIGRLDPKTLEVTRFPLPLE-HADANLETAVFDPW-GNLWFTGQIG-- 168 (353)
T ss_pred ------cCCCCCCceEEEC-CCCCeeEecCcceeEEecCcccceEEeecccc-cCCCcccceeeCCC-ccEEEeeccc--
Confidence 1345789999998 79999999999899999999988877632221 12234577899994 9999998653
Q ss_pred CccceeEeeeecCCCceEEEEcCCCCeEEEeecC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee----
Q 048181 164 DFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---- 238 (310)
Q Consensus 164 ~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---- 238 (310)
.--|+||.++.+++.... -..|+|||..|||. +|+++...+-|-+++... +..++
T Consensus 169 ----------------~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~~---~~aev~p~P 228 (353)
T COG4257 169 ----------------AYGRLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPFA---GHAEVVPQP 228 (353)
T ss_pred ----------------cceecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEccccc---CCcceecCC
Confidence 222667776766665433 34799999999997 999999999999998643 33333
Q ss_pred ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 239 INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 239 ~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
..+...-.++..|+ -|.+|++.++. +.+.+|||.-+.=..+.+|..
T Consensus 229 ~~~~~gsRriwsdp--ig~~wittwg~--------g~l~rfdPs~~sW~eypLPgs 274 (353)
T COG4257 229 NALKAGSRRIWSDP--IGRAWITTWGT--------GSLHRFDPSVTSWIEYPLPGS 274 (353)
T ss_pred CcccccccccccCc--cCcEEEeccCC--------ceeeEeCcccccceeeeCCCC
Confidence 33334567788999 99999999987 478888888777777888754
No 9
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.67 E-value=1.9e-14 Score=127.14 Aligned_cols=192 Identities=22% Similarity=0.368 Sum_probs=127.8
Q ss_pred eEEEeCCCCCCCcceEEEc-cCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181 24 FTKILFPPKAFGGESIAFE-PVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL 101 (310)
Q Consensus 24 ~~~~~~~~~~~~Pegia~d-~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~ 101 (310)
.+.+.+++ |-|++++ ++|.+|+++. +.+..++++.+ .+.+... +.+ .....+|+.+++
T Consensus 34 ~~~~~~~~----~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~--------~~~------~~~~~~~ND~~v 93 (246)
T PF08450_consen 34 VEVIDLPG----PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADL--------PDG------GVPFNRPNDVAV 93 (246)
T ss_dssp EEEEESSS----EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEE--------ETT------CSCTEEEEEEEE
T ss_pred EEEEecCC----CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeec--------cCC------CcccCCCceEEE
Confidence 34456664 9999999 6777666664 34455586644 4444321 100 124568999999
Q ss_pred ecCCCeEEEEeCCC---------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 102 HYATRQLYIADAYS---------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 102 d~~~g~LyVad~~~---------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
| ++|+||+++... +|++++++ ++++.+.. .+..||++++++++..|||+|+..
T Consensus 94 d-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-----~~~~pNGi~~s~dg~~lyv~ds~~----------- 155 (246)
T PF08450_consen 94 D-PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-----GLGFPNGIAFSPDGKTLYVADSFN----------- 155 (246)
T ss_dssp --TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----EESSEEEEEEETTSSEEEEEETTT-----------
T ss_pred c-CCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-----CcccccceEECCcchheeeccccc-----------
Confidence 8 799999997532 38999998 66665543 367899999999644699999864
Q ss_pred eecCCCceEEEEcCC--CCeE---EEee--cC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC-C
Q 048181 173 ITNDSTGRLLSYNPR--SSQV---TVLL--RN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ-A 243 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~--~g~~---~~~~--~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~-g 243 (310)
++|++++.+ ++++ +++. .. ...|.|++++++|+ |||+....++|++|+.+|.. .....+| .
T Consensus 156 ------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~---~~~i~~p~~ 225 (246)
T PF08450_consen 156 ------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKL---LREIELPVP 225 (246)
T ss_dssp ------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCE---EEEEE-SSS
T ss_pred ------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccE---EEEEcCCCC
Confidence 678888764 2312 2232 22 23599999999997 99999999999999987531 2213344 4
Q ss_pred CCceeeeCCCCCCcEEEEEe
Q 048181 244 KPHNIKRNPGLLQTFWEAAI 263 (310)
Q Consensus 244 ~Pdgl~~d~~~dG~l~va~~ 263 (310)
.|.++++..+..+.|||+..
T Consensus 226 ~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 226 RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SEEEEEEESTTSSEEEEEEB
T ss_pred CEEEEEEECCCCCEEEEEeC
Confidence 79999994210468999853
No 10
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.60 E-value=3.3e-13 Score=116.85 Aligned_cols=216 Identities=11% Similarity=0.117 Sum_probs=158.0
Q ss_pred ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCC-ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181 23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL 101 (310)
Q Consensus 23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~ 101 (310)
..++++++.. ..|.+|.+++||+.|++|..+ .|.|++++. ..+.|.... +....+-.-..+
T Consensus 94 ev~~ypLg~G-a~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~----------------~~a~~nlet~vf 155 (353)
T COG4257 94 EVETYPLGSG-ASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPL----------------EHADANLETAVF 155 (353)
T ss_pred ceEEEecCCC-CCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccc----------------ccCCCcccceee
Confidence 4567788744 689999999999999999877 899999964 355554321 112223345678
Q ss_pred ecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181 102 HYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR 180 (310)
Q Consensus 102 d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~ 180 (310)
| +.|+||++.. .| --++|+..+.++++-.. . -..|+||++.+ +|.+|++.-.. ..
T Consensus 156 D-~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP-q---G~gpyGi~atp-dGsvwyaslag-----------------na 211 (353)
T COG4257 156 D-PWGNLWFTGQ-IGAYGRLDPARNVISVFPAP-Q---GGGPYGICATP-DGSVWYASLAG-----------------NA 211 (353)
T ss_pred C-CCccEEEeec-cccceecCcccCceeeeccC-C---CCCCcceEECC-CCcEEEEeccc-----------------cc
Confidence 8 8999999854 33 33889988777766432 2 24689999999 59999996432 35
Q ss_pred EEEEcCCCCeEEEeecC---CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC---CCCceeeeCCCC
Q 048181 181 LLSYNPRSSQVTVLLRN---LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ---AKPHNIKRNPGL 254 (310)
Q Consensus 181 l~~~d~~~g~~~~~~~~---l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~---g~Pdgl~~d~~~ 254 (310)
|-++|+.++..+++... -....+|..|+.|+ +++++..++++.+|+.+.. ...--.|| ..|+.|.+|.
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~---sW~eypLPgs~arpys~rVD~-- 285 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVT---SWIEYPLPGSKARPYSMRVDR-- 285 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccc---cceeeeCCCCCCCcceeeecc--
Confidence 88999988765554321 12334688888886 9999999999999987631 11112233 4699999999
Q ss_pred CCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 255 LQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 255 dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
.|.+|..++..+ .+.||||.-.-..++.+|..
T Consensus 286 ~grVW~sea~ag--------ai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 286 HGRVWLSEADAG--------AIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred CCcEEeeccccC--------ceeecCcccceEEEecCCCC
Confidence 999999999874 79999999999999999865
No 11
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.60 E-value=1.4e-13 Score=128.84 Aligned_cols=170 Identities=20% Similarity=0.290 Sum_probs=117.3
Q ss_pred CCCCcceEEEccCCCEEEEEeC-----------CC-eEEEEECC---Cce---EEeeeecCCCCccccCCCccccCCCCC
Q 048181 32 KAFGGESIAFEPVGGAFYTGVA-----------DG-RILKYQAP---DGF---TDFAFTTPTRSKAVCDGTTNLDLGPIC 93 (310)
Q Consensus 32 ~~~~Pegia~d~~G~l~~~d~~-----------~g-~I~r~~~~---g~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ 93 (310)
.+..|.+|++|++|++|+++.. .+ +|+++... |+. ++|+ ...
T Consensus 12 ~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--------------------~~l 71 (367)
T TIGR02604 12 LLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--------------------EEL 71 (367)
T ss_pred ccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--------------------cCC
Confidence 4789999999999999888742 23 89998753 332 2232 345
Q ss_pred CceeeEEEecCCCeEEEEeCCCcEEEE-eCCC-----CeEEEeeccCCCc---cccCccceEEeCCCCeEEEEcCCCccC
Q 048181 94 RRTFGLALHYATRQLYIADAYSGLLVV-GPNG-----RLATQLATGAEGQ---AFHFLDGLDVDQGTGVVYFTDASGVYD 164 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~~~gi~~i-d~~~-----~~~~~~~~~~~g~---~~~~pndvavd~~~G~lyvtd~~~~~~ 164 (310)
..|.||++. .+| |||++.. .|+++ +.++ ++.+.+.+.+... +...+|++++++ +|+|||++......
T Consensus 72 ~~p~Gi~~~-~~G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~ 147 (367)
T TIGR02604 72 SMVTGLAVA-VGG-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLAS 147 (367)
T ss_pred CCccceeEe-cCC-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCc
Confidence 689999996 677 9998754 58887 4332 1444555544332 346699999999 59999998743110
Q ss_pred c--cceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEE
Q 048181 165 F--RTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKY 226 (310)
Q Consensus 165 ~--~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~ 226 (310)
. .............|+++|+++++++.+++..++..|+|++|+++|+ ||++|...+...++
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i 210 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV 210 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence 0 0000000112235899999999889999999999999999999997 89998866554443
No 12
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.46 E-value=7.2e-11 Score=108.74 Aligned_cols=192 Identities=12% Similarity=0.146 Sum_probs=118.6
Q ss_pred CCcceEEEccCCCEEEEE-eCCCeEEEEEC--CCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181 34 FGGESIAFEPVGGAFYTG-VADGRILKYQA--PDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI 110 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d-~~~g~I~r~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV 110 (310)
..|..++++|+|+.+|+. ...+.|..++. ++.+..... ....+.|.++++++.+..||+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~------------------~~~~~~p~~i~~~~~g~~l~v 96 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE------------------SPLPGSPTHISTDHQGRFLFS 96 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee------------------ecCCCCceEEEECCCCCEEEE
Confidence 468999999999866665 45677755443 343332210 122346889999855556888
Q ss_pred EeCCCc-EEEEeCCC-CeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181 111 ADAYSG-LLVVGPNG-RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS 188 (310)
Q Consensus 111 ad~~~g-i~~id~~~-~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~ 188 (310)
+....+ |..++.+. +..........+ ...|..++++|++..+|+++... ++|..||.++
T Consensus 97 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~-----------------~~v~v~d~~~ 157 (330)
T PRK11028 97 ASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLKE-----------------DRIRLFTLSD 157 (330)
T ss_pred EEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCCC-----------------CEEEEEEECC
Confidence 876543 66666542 222111111222 24578999999655788887643 4566665543
Q ss_pred -CeEEE------eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-e---cCC------CCCceeeeC
Q 048181 189 -SQVTV------LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I---NFQ------AKPHNIKRN 251 (310)
Q Consensus 189 -g~~~~------~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~---~l~------g~Pdgl~~d 251 (310)
+.++. ....-..|.+++|+|||++|||++...++|..|+++.. .++.+. . .+| ..|.+|+++
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 32211 11223579999999999999999998999999998732 233322 1 111 134468899
Q ss_pred CCCCCc-EEEEEecC
Q 048181 252 PGLLQT-FWEAAIIT 265 (310)
Q Consensus 252 ~~~dG~-l~va~~~~ 265 (310)
+ +|+ +|++....
T Consensus 237 p--dg~~lyv~~~~~ 249 (330)
T PRK11028 237 P--DGRHLYACDRTA 249 (330)
T ss_pred C--CCCEEEEecCCC
Confidence 9 885 78886543
No 13
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.45 E-value=1.3e-11 Score=124.27 Aligned_cols=242 Identities=18% Similarity=0.174 Sum_probs=152.0
Q ss_pred hhhhhhhcCCceee-eecceEEEeCC-CCCCCcceEEEcc-CCCEEEEEeCCCeEEEEEC------CCceEEeeeecCCC
Q 048181 6 SLFVFVFSLPRMVF-SIPTFTKILFP-PKAFGGESIAFEP-VGGAFYTGVADGRILKYQA------PDGFTDFAFTTPTR 76 (310)
Q Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~------~g~~~~~~~~~~~~ 76 (310)
|++|+=|-.-|-.+ +-.+...++|. .....-.-||++| +|.||++|...++|+|+.. ...+++++..+..+
T Consensus 377 Sl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~C 456 (1899)
T KOG4659|consen 377 SLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVC 456 (1899)
T ss_pred cEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCc
Confidence 34444444333333 22333445665 3445566799998 6999999999999999853 23467777776653
Q ss_pred --CccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeecc---------------CCCccc
Q 048181 77 --SKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATG---------------AEGQAF 139 (310)
Q Consensus 77 --~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~---------------~~g~~~ 139 (310)
+...|+.+ ..+....+..|.||++| ++|.||++|..+ |.+||..+ -++++... ...-++
T Consensus 457 lp~desCGDG-alA~dA~L~~PkGIa~d-k~g~lYfaD~t~-IR~iD~~g-iIstlig~~~~~~~p~~C~~~~kl~~~~l 532 (1899)
T KOG4659|consen 457 LPADESCGDG-ALAQDAQLIFPKGIAFD-KMGNLYFADGTR-IRVIDTTG-IISTLIGTTPDQHPPRTCAQITKLVDLQL 532 (1899)
T ss_pred cccccccCcc-hhcccceeccCCceeEc-cCCcEEEecccE-EEEeccCc-eEEEeccCCCCccCccccccccchhheee
Confidence 22236432 23445677899999998 899999999764 88898654 55554321 111257
Q ss_pred cCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC-------CC--CeEEEee--cCCCCCceeEEcc
Q 048181 140 HFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP-------RS--SQVTVLL--RNLTGPAGVAISV 208 (310)
Q Consensus 140 ~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~-------~~--g~~~~~~--~~l~~pnGIa~~~ 208 (310)
.+|.++|++|-++.+||-|.+- ++....+++|..+-. .+ .....++ ..+..|..|++++
T Consensus 533 eWPT~LaV~Pmdnsl~Vld~nv----------vlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~ 602 (1899)
T KOG4659|consen 533 EWPTSLAVDPMDNSLLVLDTNV----------VLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGT 602 (1899)
T ss_pred ecccceeecCCCCeEEEeecce----------EEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecC
Confidence 8999999999889999998753 222233444433210 00 0000011 2345779999999
Q ss_pred CCCEEEEEecCCCeEE---EEEecCCC---CCcee-----e----------------ecCCCCCceeeeCCCCCCcEEEE
Q 048181 209 DSSFLLVSEFTGNRTL---KYWLRGPR---ANSFD-----I----------------INFQAKPHNIKRNPGLLQTFWEA 261 (310)
Q Consensus 209 dg~~Lyv~d~~~~~I~---~~~~~~~~---~g~~~-----~----------------~~l~g~Pdgl~~d~~~dG~l~va 261 (310)
+|. |||+|+...+|- ++..+|.- +|... . +.+ ..|..+|+.+ ||.+|+|
T Consensus 603 ~G~-lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~l-nsp~alaVsP--dg~v~IA 678 (1899)
T KOG4659|consen 603 DGA-LYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKL-NSPYALAVSP--DGDVIIA 678 (1899)
T ss_pred Cce-EEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhcccc-CCcceEEECC--CCcEEEe
Confidence 995 999999876554 44433310 11100 0 111 3599999999 9999999
Q ss_pred EecC
Q 048181 262 AIIT 265 (310)
Q Consensus 262 ~~~~ 265 (310)
+.++
T Consensus 679 D~gN 682 (1899)
T KOG4659|consen 679 DSGN 682 (1899)
T ss_pred cCCc
Confidence 9886
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=1.1e-10 Score=108.41 Aligned_cols=225 Identities=16% Similarity=0.152 Sum_probs=134.2
Q ss_pred CCcceEEEccCCCEEEEEe-CCCeEEEE--ECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181 34 FGGESIAFEPVGGAFYTGV-ADGRILKY--QAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI 110 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~-~~g~I~r~--~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV 110 (310)
..|..++++++|+.+|+.. ..|.|..+ +.+|........- ...|...........+|+.+.+++....+||
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~------~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTV------RHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEE------ESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeec------ccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 5799999999998777776 46777554 4445433211000 0000000011134568999999855567999
Q ss_pred EeCCC-cEEEEeCC--CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181 111 ADAYS-GLLVVGPN--GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR 187 (310)
Q Consensus 111 ad~~~-gi~~id~~--~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~ 187 (310)
+|.+. .|+.++.+ ++++.... ...-++-..|..+++++++..+|+.+.... .=.++.++..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~---------------~v~v~~~~~~ 224 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVD-SIKVPPGSGPRHLAFSPDGKYAYVVNELSN---------------TVSVFDYDPS 224 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEE-EEECSTTSSEEEEEE-TTSSEEEEEETTTT---------------EEEEEEEETT
T ss_pred EecCCCEEEEEEEeCCCceEEEee-ccccccCCCCcEEEEcCCcCEEEEecCCCC---------------cEEEEeeccc
Confidence 99875 46665554 33343321 111123456899999996567899875421 1123444433
Q ss_pred CCeEEEee--c-------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecC---CCCCceeeeCCCC
Q 048181 188 SSQVTVLL--R-------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INF---QAKPHNIKRNPGL 254 (310)
Q Consensus 188 ~g~~~~~~--~-------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l---~g~Pdgl~~d~~~ 254 (310)
+++++.+. . +-..|.+|+++|||++|||+....+.|..|+++.. .|..+. ..+ ...|.+|++++
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~l~~~~~~~~~G~~Pr~~~~s~-- 301 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGTLTLVQTVPTGGKFPRHFAFSP-- 301 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTTEEEEEEEEESSSSEEEEEE-T--
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCceEEEEEEeCCCCCccEEEEeC--
Confidence 45444321 1 12368899999999999999999999999999753 355544 222 23599999999
Q ss_pred CCc-EEEEEecCCCCCCCCceeeEEECC-CCcEEEEE
Q 048181 255 LQT-FWEAAIITRQPAGTPVPIGQRISA-FGAVLDTI 289 (310)
Q Consensus 255 dG~-l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~ 289 (310)
+|+ |||+..... .-.++++|+ +|++...-
T Consensus 302 ~g~~l~Va~~~s~------~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 302 DGRYLYVANQDSN------TVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TSSEEEEEETTTT------EEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC------eEEEEEEeCCCCcEEEec
Confidence 996 788877654 134567775 57755543
No 15
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=2.7e-10 Score=105.83 Aligned_cols=225 Identities=16% Similarity=0.147 Sum_probs=139.2
Q ss_pred CCCCcceEEEccCCCEEEEEeC----CCeEEE--EECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181 32 KAFGGESIAFEPVGGAFYTGVA----DGRILK--YQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA 104 (310)
Q Consensus 32 ~~~~Pegia~d~~G~l~~~d~~----~g~I~r--~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~ 104 (310)
....|..++++++++++|+... .+.|.. ++++ ++.+.+... ......|..+++++.
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-----------------~~~g~~p~~i~~~~~ 97 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-----------------PSGGSSPCHIAVDPD 97 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-----------------EESSSCEEEEEECTT
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-----------------ccCCCCcEEEEEecC
Confidence 3468999999999987777654 467664 5565 444443210 124557899999866
Q ss_pred CCeEEEEeCCCc-EEEEeCCC-CeEEEeecc---------CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 105 TRQLYIADAYSG-LLVVGPNG-RLATQLATG---------AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 105 ~g~LyVad~~~g-i~~id~~~-~~~~~~~~~---------~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
+..||+++...+ +..++.+. +.+...... ...+...+|..+.++|++..+|++|.+.
T Consensus 98 g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~------------ 165 (345)
T PF10282_consen 98 GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA------------ 165 (345)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT------------
T ss_pred CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC------------
Confidence 677999998765 44444332 444332111 0112346788999999655799998753
Q ss_pred ecCCCceEEEE--cCCCCeEEE----eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee----ecCC-
Q 048181 174 TNDSTGRLLSY--NPRSSQVTV----LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI----INFQ- 242 (310)
Q Consensus 174 ~~~~~G~l~~~--d~~~g~~~~----~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~----~~l~- 242 (310)
.+|+.| +..+++++. ....-..|..|+|+|||+++||+....+.|..|+++.. .+..+. ..++
T Consensus 166 -----D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 166 -----DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLPE 239 (345)
T ss_dssp -----TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCET
T ss_pred -----CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeeccc
Confidence 244444 444333433 23445689999999999999999999999999999842 244332 2221
Q ss_pred ---C--CCceeeeCCCCCCc-EEEEEecCCCC-------C----------C--CCceeeEEECCCCcEEEEEecCC
Q 048181 243 ---A--KPHNIKRNPGLLQT-FWEAAIITRQP-------A----------G--TPVPIGQRISAFGAVLDTISFEA 293 (310)
Q Consensus 243 ---g--~Pdgl~~d~~~dG~-l~va~~~~~~~-------~----------~--~~~~~v~~~~~~G~~~~~~~~p~ 293 (310)
+ .|.+|++++ ||+ |||+..+..+. . + -..|+-+.++|+|+.+-+-....
T Consensus 240 ~~~~~~~~~~i~isp--dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 240 GFTGENAPAEIAISP--DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp TSCSSSSEEEEEE-T--TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred cccccCCceeEEEec--CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 1 588899999 995 79988775421 0 0 13466677777777666555443
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.39 E-value=3.9e-10 Score=103.90 Aligned_cols=208 Identities=7% Similarity=0.003 Sum_probs=126.2
Q ss_pred CcceEEEccCCCEEEEEe-CCCeEEEEECC--CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181 35 GGESIAFEPVGGAFYTGV-ADGRILKYQAP--DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA 111 (310)
Q Consensus 35 ~Pegia~d~~G~l~~~d~-~~g~I~r~~~~--g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa 111 (310)
.|..++++++|+.+|+.. .+++|..++.+ +...... ........|+++++++..+.+||+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~-----------------~~~~~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI-----------------QIIEGLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce-----------------eeccCCCcccEeEeCCCCCEEEEe
Confidence 689999999998777764 46777766543 2221100 001123468899998555678898
Q ss_pred eCCCc-EEEEeCCC-CeEEEee-ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE--EEEcC
Q 048181 112 DAYSG-LLVVGPNG-RLATQLA-TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL--LSYNP 186 (310)
Q Consensus 112 d~~~g-i~~id~~~-~~~~~~~-~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l--~~~d~ 186 (310)
+...+ |..+|.++ +.+.... ....-..-..|+++++++++..+|+++... ++| |.++.
T Consensus 144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-----------------~~v~v~~~~~ 206 (330)
T PRK11028 144 CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-----------------SSVDVWQLKD 206 (330)
T ss_pred eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-----------------CEEEEEEEeC
Confidence 87644 77777654 3322100 000001124589999999655688887532 334 44443
Q ss_pred CCCeEEEeec---------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecC--CCCCceeeeCCCC
Q 048181 187 RSSQVTVLLR---------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INF--QAKPHNIKRNPGL 254 (310)
Q Consensus 187 ~~g~~~~~~~---------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l--~g~Pdgl~~d~~~ 254 (310)
.+++.+.+.. +..+|.+|+++|||++||+++...+.|..|+++.. .+..++ ... ...|.++++++
T Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~-~~~~~~~~~~~~~~~p~~~~~~~-- 283 (330)
T PRK11028 207 PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED-GSVLSFEGHQPTETQPRGFNIDH-- 283 (330)
T ss_pred CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC-CCeEEEeEEEeccccCCceEECC--
Confidence 3344332211 11245579999999999999888889999988642 233333 222 23699999999
Q ss_pred CC-cEEEEEecCCCCCCCCceeeEEECC-CCcE
Q 048181 255 LQ-TFWEAAIITRQPAGTPVPIGQRISA-FGAV 285 (310)
Q Consensus 255 dG-~l~va~~~~~~~~~~~~~~v~~~~~-~G~~ 285 (310)
|| .||++....+ .-.+++++. +|.+
T Consensus 284 dg~~l~va~~~~~------~v~v~~~~~~~g~l 310 (330)
T PRK11028 284 SGKYLIAAGQKSH------HISVYEIDGETGLL 310 (330)
T ss_pred CCCEEEEEEccCC------cEEEEEEcCCCCcE
Confidence 99 5788875443 135666774 4653
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.37 E-value=1.3e-10 Score=108.89 Aligned_cols=209 Identities=18% Similarity=0.165 Sum_probs=124.3
Q ss_pred CCCCCcceEEEccCCCEEEEEeCCCeEEEEEC-CC------ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181 31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQA-PD------GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY 103 (310)
Q Consensus 31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~-~g------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~ 103 (310)
..+..|+||++.++| +|+++ ..+|+++.. ++ +.+++....+. .-......+++++++
T Consensus 69 ~~l~~p~Gi~~~~~G-lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~------------~~~~~~~~~~~l~~g- 132 (367)
T TIGR02604 69 EELSMVTGLAVAVGG-VYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGG------------QINNHHHSLNSLAWG- 132 (367)
T ss_pred cCCCCccceeEecCC-EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCC------------CCCcccccccCceEC-
Confidence 357789999999888 77765 557998843 22 22233210000 000113458899997
Q ss_pred CCCeEEEEeCC--------------------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCcc
Q 048181 104 ATRQLYIADAY--------------------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVY 163 (310)
Q Consensus 104 ~~g~LyVad~~--------------------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~ 163 (310)
++|+||+++.. .+|+++++++++.+.++. .+..|+++++++ +|++|+||....-
T Consensus 133 pDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~-~G~l~~tdn~~~~ 206 (367)
T TIGR02604 133 PDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDS-WGDVFFCDNDDPP 206 (367)
T ss_pred CCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECC-CCCEEEEccCCCc
Confidence 78999997651 138999999887776643 367899999999 5999999975321
Q ss_pred CccceeEeeeecCCCceEE-----EEcCCCC---eE---------------EEeecCCCCCceeEEccC-------CCEE
Q 048181 164 DFRTIVKLNITNDSTGRLL-----SYNPRSS---QV---------------TVLLRNLTGPAGVAISVD-------SSFL 213 (310)
Q Consensus 164 ~~~~~~~~~~~~~~~G~l~-----~~d~~~g---~~---------------~~~~~~l~~pnGIa~~~d-------g~~L 213 (310)
...+..+......|..+ ..++..+ +. .........|.|+++... .+.+
T Consensus 207 --~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~ 284 (367)
T TIGR02604 207 --LCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLL 284 (367)
T ss_pred --eeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCE
Confidence 00000000010011000 0000000 00 001112246899999842 2458
Q ss_pred EEEecCCCeEEEEEecCCCC---Cc-eee-ec--CCCCCceeeeCCCCCCcEEEEEecC
Q 048181 214 LVSEFTGNRTLKYWLRGPRA---NS-FDI-IN--FQAKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 214 yv~d~~~~~I~~~~~~~~~~---g~-~~~-~~--l~g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
++++...++|+++.++.... ++ ..+ .. .-+.|-.+++++ ||.|||+++..
T Consensus 285 fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~p--DG~Lyv~d~~~ 341 (367)
T TIGR02604 285 LVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGP--DGALYVSDWYD 341 (367)
T ss_pred EeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECC--CCCEEEEEecc
Confidence 99999999999999863211 11 112 21 115788999999 99999999654
No 18
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.35 E-value=5.5e-11 Score=115.52 Aligned_cols=223 Identities=16% Similarity=0.121 Sum_probs=156.5
Q ss_pred EeCCCCCCCcceEEEc-cCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181 27 ILFPPKAFGGESIAFE-PVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA 104 (310)
Q Consensus 27 ~~~~~~~~~Pegia~d-~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~ 104 (310)
|-+|+. -|-||++| .+..+||+|+....|.|-...|.. +++. ...+..|-|||+|-.
T Consensus 1020 l~~p~~--IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~-------------------n~~L~SPEGiAVDh~ 1078 (1289)
T KOG1214|consen 1020 LSLPGS--IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV-------------------NSGLISPEGIAVDHI 1078 (1289)
T ss_pred Eecccc--eeeeeecccccceEEEeecCCCccccccccCCCCceee-------------------cccCCCccceeeeec
Confidence 555664 37789999 556799999999999998887643 3321 245678999999866
Q ss_pred CCeEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181 105 TRQLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183 (310)
Q Consensus 105 ~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~ 183 (310)
..++|.+|... .|-+-.+++.+.+++... .+..|.+|++|+-.|+||+||+.. .+-.|-+
T Consensus 1079 ~Rn~ywtDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDWnR---------------enPkIet 1139 (1289)
T KOG1214|consen 1079 RRNMYWTDSVLDKIEVALLDGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDWNR---------------ENPKIET 1139 (1289)
T ss_pred cceeeeeccccchhheeecCCceeeEEEee----cccCcceEEeecccCceeeccccc---------------cCCccee
Confidence 77899998754 233333445444444432 366789999999889999999863 1234544
Q ss_pred EcCCCCeEE-EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEE
Q 048181 184 YNPRSSQVT-VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEA 261 (310)
Q Consensus 184 ~d~~~g~~~-~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va 261 (310)
.+.+...-+ .+.+.+..|||+.|+|-.+.|-.+|..++|+-...+++. |...+ .+|. +|-+|+-+. + ++|-+
T Consensus 1140 s~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~~~Lq-YPF~itsy~--~-~fY~T 1213 (1289)
T KOG1214|consen 1140 SSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQNNLQ-YPFSITSYA--D-HFYHT 1213 (1289)
T ss_pred eccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhhhccc-Cceeeeecc--c-cceee
Confidence 444422223 344678899999999999999999999999999988864 54444 5665 899999998 6 48888
Q ss_pred EecCCCCCCCCceeeEEECCCCcEEEEEecCCCc-cccceeEE
Q 048181 262 AIITRQPAGTPVPIGQRISAFGAVLDTISFEAQY-STTPISEV 303 (310)
Q Consensus 262 ~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~-~~~~~t~~ 303 (310)
+|--. .|+.++--+.-.+...+|.+- ++=.||.|
T Consensus 1214 DWk~n--------~vvsv~~~~~~~td~~~p~~~s~lyGItav 1248 (1289)
T KOG1214|consen 1214 DWKRN--------GVVSVNKHSGQFTDEYLPEQRSHLYGITAV 1248 (1289)
T ss_pred ccccC--------ceEEeeccccccccccccccccceEEEEec
Confidence 88653 678888766655666666432 23344444
No 19
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=5.1e-10 Score=101.71 Aligned_cols=196 Identities=18% Similarity=0.240 Sum_probs=124.3
Q ss_pred eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181 24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH 102 (310)
Q Consensus 24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d 102 (310)
.+.+..|+. .+.+..++..|.|+ +......++..+. ++. +.++.. ++ .....+|+...++
T Consensus 59 ~~~~~~p~~--~~~~~~~d~~g~Lv-~~~~g~~~~~~~~-~~~~t~~~~~--------~~-------~~~~~r~ND~~v~ 119 (307)
T COG3386 59 KRVFPSPGG--FSSGALIDAGGRLI-ACEHGVRLLDPDT-GGKITLLAEP--------ED-------GLPLNRPNDGVVD 119 (307)
T ss_pred eEEEECCCC--cccceeecCCCeEE-EEccccEEEeccC-CceeEEeccc--------cC-------CCCcCCCCceeEc
Confidence 456677764 47788888777744 4433333333322 333 443311 11 1345789999998
Q ss_pred cCCCeEEEEeCC-----C------c-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181 103 YATRQLYIADAY-----S------G-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK 170 (310)
Q Consensus 103 ~~~g~LyVad~~-----~------g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~ 170 (310)
++|++|+.+.. . + ++++++.++..+.+. ..+..||+|+++|++-.+|++|+..
T Consensus 120 -pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-----~~~~~~NGla~SpDg~tly~aDT~~--------- 184 (307)
T COG3386 120 -PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-----DDLTIPNGLAFSPDGKTLYVADTPA--------- 184 (307)
T ss_pred -CCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-----CcEEecCceEECCCCCEEEEEeCCC---------
Confidence 78999998776 2 2 999998765444332 1367899999999644999999864
Q ss_pred eeeecCCCceEEEEcCC--CC----eEEEeec--CCCCCceeEEccCCCEEEEE-ecCCCeEEEEEecCCCCCceeeecC
Q 048181 171 LNITNDSTGRLLSYNPR--SS----QVTVLLR--NLTGPAGVAISVDSSFLLVS-EFTGNRTLKYWLRGPRANSFDIINF 241 (310)
Q Consensus 171 ~~~~~~~~G~l~~~d~~--~g----~~~~~~~--~l~~pnGIa~~~dg~~Lyv~-d~~~~~I~~~~~~~~~~g~~~~~~l 241 (310)
+++++++-+ ++ +...+.- .-..|.|+++|.||+ ||++ .....+|.+|+.+|...+. ..+
T Consensus 185 --------~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG~l~~~---i~l 252 (307)
T COG3386 185 --------NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDGKLLGE---IKL 252 (307)
T ss_pred --------CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCCcEEEE---EEC
Confidence 456666432 11 1111111 225799999999997 7854 4444599999987643322 445
Q ss_pred C-CCCceeeeCCCCC-CcEEEEEecCC
Q 048181 242 Q-AKPHNIKRNPGLL-QTFWEAAIITR 266 (310)
Q Consensus 242 ~-g~Pdgl~~d~~~d-G~l~va~~~~~ 266 (310)
| ..|.++++-.. + ..|||+....+
T Consensus 253 P~~~~t~~~FgG~-~~~~L~iTs~~~~ 278 (307)
T COG3386 253 PVKRPTNPAFGGP-DLNTLYITSARSG 278 (307)
T ss_pred CCCCCccceEeCC-CcCEEEEEecCCC
Confidence 6 57888888651 3 46999977653
No 20
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=7.5e-09 Score=97.42 Aligned_cols=220 Identities=17% Similarity=0.161 Sum_probs=150.8
Q ss_pred CCcceEEEccCC-CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181 34 FGGESIAFEPVG-GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD 112 (310)
Q Consensus 34 ~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad 112 (310)
..|.++++.++| .+|++......+..++.. ....... .......|.|+++.....++|+++
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~-----------------~~~g~~~p~~i~v~~~~~~vyv~~ 92 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQS-----------------LSVGGVYPAGVAVNPAGNKVYVTT 92 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccc-cceeeee-----------------ccCCCccccceeeCCCCCeEEEec
Confidence 379999999998 566666555555555544 2111100 011226899999975566799998
Q ss_pred CC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181 113 AY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV 191 (310)
Q Consensus 113 ~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~ 191 (310)
.. +.|.+||.++.+...... -| ..|.+++++++++.+|++|... .++.+..+|..++++
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~--vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~ 152 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIP--VG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKV 152 (381)
T ss_pred CCCCeEEEEcCcccceeeEee--ec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeE
Confidence 66 458999966544332221 12 2688999999867999999852 247899999988776
Q ss_pred EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee---eecCCCCCceeeeCCCCCCc-EEEEEecCC-
Q 048181 192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD---IINFQAKPHNIKRNPGLLQT-FWEAAIITR- 266 (310)
Q Consensus 192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~---~~~l~g~Pdgl~~d~~~dG~-l~va~~~~~- 266 (310)
......-..|-|++++|+|+.+|+++...++|..++.++....... .......|.++++++ +|+ +||++....
T Consensus 153 ~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~--~g~~~yV~~~~~~~ 230 (381)
T COG3391 153 TATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP--DGNRVYVANDGSGS 230 (381)
T ss_pred EEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC--CCCEEEEEeccCCC
Confidence 6554333368999999999999999999999999997654221111 122335799999999 997 899988762
Q ss_pred -CCC--------------C-CC-ceeeEEECCCCcEEEEEecCC
Q 048181 267 -QPA--------------G-TP-VPIGQRISAFGAVLDTISFEA 293 (310)
Q Consensus 267 -~~~--------------~-~~-~~~v~~~~~~G~~~~~~~~p~ 293 (310)
... + .. .+..+.++|+|+.+.+.....
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence 110 1 11 456788899999888886663
No 21
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.3e-08 Score=95.85 Aligned_cols=186 Identities=20% Similarity=0.251 Sum_probs=129.1
Q ss_pred CCcceEEEccCCC-EEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181 34 FGGESIAFEPVGG-AFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA 111 (310)
Q Consensus 34 ~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa 111 (310)
..|.++++.+.|. +|......+.|..++.... .... ......|.++++++.++.+||+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~--------------------~~vG~~P~~~~~~~~~~~vYV~ 133 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS--------------------IPVGLGPVGLAVDPDGKYVYVA 133 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE--------------------eeeccCCceEEECCCCCEEEEE
Confidence 6799999999987 6666666788999985432 2111 1223379999998667799999
Q ss_pred eCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181 112 DAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS 188 (310)
Q Consensus 112 d~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~ 188 (310)
+.. +.+.++|.+++++... ...| ..|-++++++++..+|++|.. +++|..+|..+
T Consensus 134 n~~~~~~~vsvid~~t~~~~~~--~~vG---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~ 191 (381)
T COG3391 134 NAGNGNNTVSVIDAATNKVTAT--IPVG---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSG 191 (381)
T ss_pred ecccCCceEEEEeCCCCeEEEE--EecC---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCC
Confidence 984 3499999988765433 2222 145799999964459999954 36788888765
Q ss_pred CeEEE-----eecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EE
Q 048181 189 SQVTV-----LLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FW 259 (310)
Q Consensus 189 g~~~~-----~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~ 259 (310)
..+.. .......|.++++++||+.+||++..+ +++.+++........... .+.. .|.++++++ +|. +|
T Consensus 192 ~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p--~g~~~y 268 (381)
T COG3391 192 NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDP--AGKAAY 268 (381)
T ss_pred cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECC--CCCEEE
Confidence 54442 234567899999999999999999988 689988875422111111 2222 599999999 996 56
Q ss_pred EEEec
Q 048181 260 EAAII 264 (310)
Q Consensus 260 va~~~ 264 (310)
++...
T Consensus 269 v~~~~ 273 (381)
T COG3391 269 VANSQ 273 (381)
T ss_pred EEecC
Confidence 66554
No 22
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.17 E-value=3.4e-09 Score=97.87 Aligned_cols=175 Identities=20% Similarity=0.234 Sum_probs=101.2
Q ss_pred CCCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEec---CCCeE
Q 048181 33 AFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY---ATRQL 108 (310)
Q Consensus 33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~---~~g~L 108 (310)
|..|.+|++.|||++|+++. .|+|++++.++.. ..+..... ..........||++++ .++.|
T Consensus 1 L~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~-------------v~~~~~~gllgia~~p~f~~n~~l 66 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPE-------------VFADGERGLLGIAFHPDFASNGYL 66 (331)
T ss_dssp ESSEEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TT-------------TBTSTTBSEEEEEE-TTCCCC-EE
T ss_pred CCCceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceeccccc-------------ccccccCCcccceeccccCCCCEE
Confidence 45799999999999777665 9999999977654 23322110 0112234678999984 25899
Q ss_pred EEEeCC---------CcEEEEeCCCC--e---EEEeeccCCC--ccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 109 YIADAY---------SGLLVVGPNGR--L---ATQLATGAEG--QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 109 yVad~~---------~gi~~id~~~~--~---~~~~~~~~~g--~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
||+-.. ..|.++..+.+ . .+.+...... .....-..|+++| +|.|||+-..... .....
T Consensus 67 Yv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~--~~~~~-- 141 (331)
T PF07995_consen 67 YVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGN--DDNAQ-- 141 (331)
T ss_dssp EEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTT--GGGGC--
T ss_pred EEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCC--ccccc--
Confidence 997542 13666654433 1 2233222111 1233456799999 5999998654321 00000
Q ss_pred eecCCCceEEEEcCCCC-------------eEEEeecCCCCCceeEEccCCCEEEEEecCCC---eEEEE
Q 048181 173 ITNDSTGRLLSYNPRSS-------------QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN---RTLKY 226 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g-------------~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~---~I~~~ 226 (310)
-.....|+|+|++++.. ..++.+.++..|.|++|+|....||++|.... +|.++
T Consensus 142 ~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i 211 (331)
T PF07995_consen 142 DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRI 211 (331)
T ss_dssp STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE
T ss_pred ccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEe
Confidence 01234688999987632 23566778889999999998335999886543 45554
No 23
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.14 E-value=3.2e-08 Score=87.18 Aligned_cols=203 Identities=13% Similarity=0.148 Sum_probs=113.5
Q ss_pred eEEEeCCCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181 24 FTKILFPPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL 101 (310)
Q Consensus 24 ~~~~~~~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~ 101 (310)
++..++|+-...+.||+|+++ +.||.+....+.|+.++.+|+.. .+.. ...+.+-||++
T Consensus 12 i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l-------------------~g~~D~EgI~y 72 (248)
T PF06977_consen 12 IEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL-------------------DGFGDYEGITY 72 (248)
T ss_dssp EEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--------------------SS-SSEEEEEE
T ss_pred EeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC-------------------CCCCCceeEEE
Confidence 445677876667999999997 55777777889999999987653 3321 22456889999
Q ss_pred ecCCCeEEEEeCCC-cEEEEeC--CCCeE-----EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 102 HYATRQLYIADAYS-GLLVVGP--NGRLA-----TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 102 d~~~g~LyVad~~~-gi~~id~--~~~~~-----~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
- .++.+.+++... .++.++. .+..+ +.+.-......=....|++.|+.++++|+.--.
T Consensus 73 ~-g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~------------- 138 (248)
T PF06977_consen 73 L-GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER------------- 138 (248)
T ss_dssp --STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-------------
T ss_pred E-CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-------------
Confidence 4 777777777543 4666554 33221 112111111111235799999987899987321
Q ss_pred ecCCCceEEEEcC--CCCeEEEee--------cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-e---
Q 048181 174 TNDSTGRLLSYNP--RSSQVTVLL--------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I--- 239 (310)
Q Consensus 174 ~~~~~G~l~~~d~--~~g~~~~~~--------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~--- 239 (310)
.| .+||.++. ......... ..+.-+-+++++|..++||+-...+++|..++.+|.-.....+ .
T Consensus 139 --~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~ 215 (248)
T PF06977_consen 139 --KP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFH 215 (248)
T ss_dssp --SS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGG
T ss_pred --CC-hhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCccc
Confidence 12 34666653 112222111 1344689999999998999999999999999976542222222 1
Q ss_pred ----cCCCCCceeeeCCCCCCcEEEEEecC
Q 048181 240 ----NFQAKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 240 ----~l~g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
.++ -|-||++|+ +|+|||+.-.+
T Consensus 216 gl~~~~~-QpEGIa~d~--~G~LYIvsEpN 242 (248)
T PF06977_consen 216 GLSKDIP-QPEGIAFDP--DGNLYIVSEPN 242 (248)
T ss_dssp G-SS----SEEEEEE-T--T--EEEEETTT
T ss_pred CcccccC-CccEEEECC--CCCEEEEcCCc
Confidence 123 499999999 99999997654
No 24
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.10 E-value=2.7e-07 Score=82.44 Aligned_cols=203 Identities=11% Similarity=0.068 Sum_probs=127.3
Q ss_pred CCcceEEEccCCCEEEEE-eCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-
Q 048181 34 FGGESIAFEPVGGAFYTG-VADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA- 111 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d-~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa- 111 (310)
..|..++++++|+.+|+. ..+++|..++......... ......|.+++++ ++|.++++
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~-~dg~~l~~~ 132 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE-------------------IPVGVEPEGMAVS-PDGKIVVNT 132 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE-------------------eeCCCCcceEEEC-CCCCEEEEE
Confidence 357889999999866665 4568888888764322110 0112346789997 56666554
Q ss_pred eCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181 112 DAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS 189 (310)
Q Consensus 112 d~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g 189 (310)
.... .+..+|.++++...... .+ ..|+.++++++ |+ +|++... +|.++.+|..++
T Consensus 133 ~~~~~~~~~~d~~~~~~~~~~~--~~---~~~~~~~~s~d-g~~l~~~~~~-----------------~~~v~i~d~~~~ 189 (300)
T TIGR03866 133 SETTNMAHFIDTKTYEIVDNVL--VD---QRPRFAEFTAD-GKELWVSSEI-----------------GGTVSVIDVATR 189 (300)
T ss_pred ecCCCeEEEEeCCCCeEEEEEE--cC---CCccEEEECCC-CCEEEEEcCC-----------------CCEEEEEEcCcc
Confidence 3332 25667877655432111 11 24678899995 65 5565321 356777877666
Q ss_pred eEEEeec--------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EE
Q 048181 190 QVTVLLR--------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FW 259 (310)
Q Consensus 190 ~~~~~~~--------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~ 259 (310)
+...... ....|.+++++|||+++|++....++|..++... +.... ......|..+++++ +|. ||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~--~g~~l~ 264 (300)
T TIGR03866 190 KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT---YEVLDYLLVGQRVWQLAFTP--DEKYLL 264 (300)
T ss_pred eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEeCCCcceEEECC--CCCEEE
Confidence 4322111 1224679999999999999887788899998753 33221 22234588999999 996 45
Q ss_pred EEEecCCCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181 260 EAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE 292 (310)
Q Consensus 260 va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p 292 (310)
++.... +.+.++|. .++++..+...
T Consensus 265 ~~~~~~--------~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 265 TTNGVS--------NDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEcCCC--------CeEEEEECCCCcEEEEEEcc
Confidence 554433 37888996 58888888764
No 25
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.06 E-value=3.7e-08 Score=89.05 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=107.0
Q ss_pred eeeEEEecCCCeEEEEeCCC-------------cEEEEeCCCCeEEEeec--cCCCccccCccceEEeCCC-----CeEE
Q 048181 96 TFGLALHYATRQLYIADAYS-------------GLLVVGPNGRLATQLAT--GAEGQAFHFLDGLDVDQGT-----GVVY 155 (310)
Q Consensus 96 P~Gla~d~~~g~LyVad~~~-------------gi~~id~~~~~~~~~~~--~~~g~~~~~pndvavd~~~-----G~ly 155 (310)
..++.+| +.|+|||.|.+. .|+.+|++++++..... ...-++-.+.||+++|... +.+|
T Consensus 3 V~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred ccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 3578998 899999999652 38999999886532211 1111245678999999842 5899
Q ss_pred EEcCCCccCccceeEeeeecCCCceEEEEcCCC-----CeEEEeecC-----CCCCceeEEcc---CCCEEEEEecCCCe
Q 048181 156 FTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS-----SQVTVLLRN-----LTGPAGVAISV---DSSFLLVSEFTGNR 222 (310)
Q Consensus 156 vtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~-----g~~~~~~~~-----l~~pnGIa~~~---dg~~Lyv~d~~~~~ 222 (310)
+||.... . .+.-...+|+.+|+-... ........+ .....||++++ ||++||+.-..+.+
T Consensus 82 ItD~~~~---g----lIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ 154 (287)
T PF03022_consen 82 ITDSGGP---G----LIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRK 154 (287)
T ss_dssp EEETTTC---E----EEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SE
T ss_pred EeCCCcC---c----EEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCc
Confidence 9998742 0 011111233444432100 000011111 12357899987 88999999999999
Q ss_pred EEEEEec---CCCCCcee-------e-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCC-----cEE
Q 048181 223 TLKYWLR---GPRANSFD-------I-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFG-----AVL 286 (310)
Q Consensus 223 I~~~~~~---~~~~g~~~-------~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G-----~~~ 286 (310)
+++++.+ .+...... . ..-++..+|+++|+ +|+||.+..... .|.++++++ +..
T Consensus 155 ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~--~G~ly~~~~~~~--------aI~~w~~~~~~~~~~~~ 224 (287)
T PF03022_consen 155 LYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP--NGNLYFTDVEQN--------AIGCWDPDGPYTPENFE 224 (287)
T ss_dssp EEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET--TTEEEEEECCCT--------EEEEEETTTSB-GCCEE
T ss_pred EEEEEHHHhhCccccccccccccceeccccCCCCceEEECC--CCcEEEecCCCC--------eEEEEeCCCCcCccchh
Confidence 9999854 11111111 1 11123469999999 999999998874 899999998 566
Q ss_pred EEEecCC
Q 048181 287 DTISFEA 293 (310)
Q Consensus 287 ~~~~~p~ 293 (310)
..+.+|.
T Consensus 225 ~l~~d~~ 231 (287)
T PF03022_consen 225 ILAQDPR 231 (287)
T ss_dssp EEEE-CC
T ss_pred eeEEcCc
Confidence 6666665
No 26
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.04 E-value=3.4e-08 Score=100.31 Aligned_cols=217 Identities=16% Similarity=0.197 Sum_probs=136.8
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181 32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA 111 (310)
Q Consensus 32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa 111 (310)
+|..|-.+|..+||.||+-|. +-|+|+.++|..+++...+. ....+-.=||+++-+|.|||+
T Consensus 363 ~L~aPvala~a~DGSl~VGDf--NyIRRI~~dg~v~tIl~L~~----------------t~~sh~Yy~AvsPvdgtlyvS 424 (1899)
T KOG4659|consen 363 SLFAPVALAYAPDGSLIVGDF--NYIRRISQDGQVSTILTLGL----------------TDTSHSYYIAVSPVDGTLYVS 424 (1899)
T ss_pred eeeceeeEEEcCCCcEEEccc--hheeeecCCCceEEEEEecC----------------CCccceeEEEecCcCceEEec
Confidence 455788899999999766653 47999999988776543221 122344579999889999999
Q ss_pred eCCC-cEEEEeC-CC----CeEEEeecc----------C-C-----CccccCccceEEeCCCCeEEEEcCCCccCcccee
Q 048181 112 DAYS-GLLVVGP-NG----RLATQLATG----------A-E-----GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIV 169 (310)
Q Consensus 112 d~~~-gi~~id~-~~----~~~~~~~~~----------~-~-----g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~ 169 (310)
|... .|+++.. .. +..+.++.. . + ...+.+|-|+++|. +|.+||.|....
T Consensus 425 dp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD~t~I------- 496 (1899)
T KOG4659|consen 425 DPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFADGTRI------- 496 (1899)
T ss_pred CCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEecccEE-------
Confidence 9764 5888842 11 112333321 0 1 13689999999999 699999997641
Q ss_pred EeeeecCCCceEEEEcCC----------CCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCC---CCce
Q 048181 170 KLNITNDSTGRLLSYNPR----------SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR---ANSF 236 (310)
Q Consensus 170 ~~~~~~~~~G~l~~~d~~----------~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~---~g~~ 236 (310)
-..+.+|-+--+-.. .+..+...-.+.+|..+|++|=.+.|||-|+ +.|++++.+..- +|..
T Consensus 497 ---R~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP 571 (1899)
T KOG4659|consen 497 ---RVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRP 571 (1899)
T ss_pred ---EEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCc
Confidence 011222322222110 0111111224679999999997778999875 566666654320 1111
Q ss_pred eeecCC---------------CCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEE
Q 048181 237 DIINFQ---------------AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVL 286 (310)
Q Consensus 237 ~~~~l~---------------g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~ 286 (310)
....++ -.|..|++.. +|.|||++...+. --+|.++..||++.
T Consensus 572 ~hC~~a~~t~~~skla~H~tl~~~r~Iavg~--~G~lyvaEsD~rr-----iNrvr~~~tdg~i~ 629 (1899)
T KOG4659|consen 572 THCDLANATSSASKLADHRTLLIQRDIAVGT--DGALYVAESDGRR-----INRVRKLSTDGTIS 629 (1899)
T ss_pred cccccCCCchhhhhhhhhhhhhhhhceeecC--CceEEEEeccchh-----hhheEEeccCceEE
Confidence 101111 2478899999 9999999998751 24688889999643
No 27
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.01 E-value=5.6e-07 Score=80.42 Aligned_cols=172 Identities=14% Similarity=0.162 Sum_probs=103.9
Q ss_pred CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCC
Q 048181 45 GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYS-GLLVVGPN 123 (310)
Q Consensus 45 G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~ 123 (310)
+++|++...++.|..++.+++...... .....|.++++++.+..+|++.... .|..+|.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-------------------~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-------------------PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-------------------ECCCCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 356777778899999987643221110 1123467899974334577776543 48888988
Q ss_pred CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCce
Q 048181 124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAG 203 (310)
Q Consensus 124 ~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnG 203 (310)
+++....... + ..+..+++++++..+|++... ++.+..+|..+++.......-..|++
T Consensus 62 ~~~~~~~~~~--~---~~~~~~~~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~ 119 (300)
T TIGR03866 62 TGEVIGTLPS--G---PDPELFALHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEG 119 (300)
T ss_pred CCcEEEeccC--C---CCccEEEECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcce
Confidence 7654332111 1 124678899853457776532 35788888876544332332345899
Q ss_pred eEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EEEEE
Q 048181 204 VAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FWEAA 262 (310)
Q Consensus 204 Ia~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~va~ 262 (310)
++++|||+.++++......++.++... +.... ......|..+++++ +|. ||++.
T Consensus 120 ~~~~~dg~~l~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~ 175 (300)
T TIGR03866 120 MAVSPDGKIVVNTSETTNMAHFIDTKT---YEIVDNVLVDQRPRFAEFTA--DGKELWVSS 175 (300)
T ss_pred EEECCCCCEEEEEecCCCeEEEEeCCC---CeEEEEEEcCCCccEEEECC--CCCEEEEEc
Confidence 999999997777765555666666542 22211 11234577889998 886 45553
No 28
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=5.4e-07 Score=81.13 Aligned_cols=226 Identities=15% Similarity=0.104 Sum_probs=134.3
Q ss_pred CCcceEEEccCCCEEEEEeCC-CeEEEE--ECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181 34 FGGESIAFEPVGGAFYTGVAD-GRILKY--QAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI 110 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~-g~I~r~--~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV 110 (310)
..|.-+++|++|+.+|+.... |.|..+ ..+|.......... -.|++ .........++-..+++....|++
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~------h~g~~-p~~rQ~~~h~H~a~~tP~~~~l~v 161 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK------HTGSG-PHERQESPHVHSANFTPDGRYLVV 161 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee------cCCCC-CCccccCCccceeeeCCCCCEEEE
Confidence 356889999999888887654 444433 33443321100000 01111 011112234556667644447888
Q ss_pred EeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181 111 ADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS 189 (310)
Q Consensus 111 ad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g 189 (310)
+|-+. .|..++.+.|..+.. ....-++-..|..|+++|+.--.|+..-- ...=.++.|++..+
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~-~~~~v~~G~GPRHi~FHpn~k~aY~v~EL---------------~stV~v~~y~~~~g 225 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPA-DPAEVKPGAGPRHIVFHPNGKYAYLVNEL---------------NSTVDVLEYNPAVG 225 (346)
T ss_pred eecCCceEEEEEcccCccccc-cccccCCCCCcceEEEcCCCcEEEEEecc---------------CCEEEEEEEcCCCc
Confidence 88764 587777776665433 22112444668899999953345655421 11123566676556
Q ss_pred eEEEee------cCC---CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecC--CC-CCceeeeCCCCCC
Q 048181 190 QVTVLL------RNL---TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INF--QA-KPHNIKRNPGLLQ 256 (310)
Q Consensus 190 ~~~~~~------~~l---~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l--~g-~Pdgl~~d~~~dG 256 (310)
+++.+. +.+ .+.-.|.+++||++||+++-.-+.|+.|.++. ..|..++ ... .| .|..+.+++ .|
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~-~~g~L~~~~~~~teg~~PR~F~i~~--~g 302 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP-DGGKLELVGITPTEGQFPRDFNINP--SG 302 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC-CCCEEEEEEEeccCCcCCccceeCC--CC
Confidence 665543 223 34457899999999999999999999999874 3455555 222 23 499999999 99
Q ss_pred cEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEe
Q 048181 257 TFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTIS 290 (310)
Q Consensus 257 ~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~ 290 (310)
++.++.....+ .-.+.+.|+ .|++-..-.
T Consensus 303 ~~Liaa~q~sd-----~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 303 RFLIAANQKSD-----NITVFERDKETGRLTLLGR 332 (346)
T ss_pred CEEEEEccCCC-----cEEEEEEcCCCceEEeccc
Confidence 87766655431 245777776 477554433
No 29
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.01 E-value=6.5e-08 Score=91.96 Aligned_cols=189 Identities=19% Similarity=0.174 Sum_probs=112.8
Q ss_pred eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181 24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH 102 (310)
Q Consensus 24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d 102 (310)
++.-.+...|..|.+|++.+||++|++....|+|++++++++.. .+... +. .......+.+.||+++
T Consensus 20 f~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l-~~-----------v~~~~ge~GLlglal~ 87 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTL-PE-----------IVNDAQHNGLLGLALH 87 (454)
T ss_pred cEEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecC-Cc-----------eeccCCCCceeeEEEC
Confidence 33334456799999999999999887776679999998765432 22110 00 0000124568899997
Q ss_pred c------CCCeEEEEeC----------CCcEEEEeCC--CCe---EEEeeccCCCccccCccceEEeCCCCeEEEEcCCC
Q 048181 103 Y------ATRQLYIADA----------YSGLLVVGPN--GRL---ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASG 161 (310)
Q Consensus 103 ~------~~g~LyVad~----------~~gi~~id~~--~~~---~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~ 161 (310)
+ .++.|||+-. ...|.++..+ +.. .+.+....+.....+-..|++++ +|.|||+--..
T Consensus 88 PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~ 166 (454)
T TIGR03606 88 PDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQ 166 (454)
T ss_pred CCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCC
Confidence 3 3467999731 2347776543 111 12333322222223445789999 59999976443
Q ss_pred ccC-------cccee-----Eee---eecCCCceEEEEcCCCC-----------eEEEeecCCCCCceeEEccCCCEEEE
Q 048181 162 VYD-------FRTIV-----KLN---ITNDSTGRLLSYNPRSS-----------QVTVLLRNLTGPAGVAISVDSSFLLV 215 (310)
Q Consensus 162 ~~~-------~~~~~-----~~~---~~~~~~G~l~~~d~~~g-----------~~~~~~~~l~~pnGIa~~~dg~~Lyv 215 (310)
... ...-. .+. -.....|+|+|++++.. ..++..-++..|.|++|+|+|+ ||+
T Consensus 167 g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~ 245 (454)
T TIGR03606 167 GRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYA 245 (454)
T ss_pred CCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEE
Confidence 110 00000 000 01124689999998732 1356677899999999999875 999
Q ss_pred EecCC---CeEEEE
Q 048181 216 SEFTG---NRTLKY 226 (310)
Q Consensus 216 ~d~~~---~~I~~~ 226 (310)
+|-.. .+|.++
T Consensus 246 ~e~Gp~~~DEiN~I 259 (454)
T TIGR03606 246 SEQGPNSDDELNII 259 (454)
T ss_pred EecCCCCCcEEEEe
Confidence 99755 345544
No 30
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.98 E-value=9.2e-09 Score=100.42 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=119.3
Q ss_pred CCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181 32 KAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI 110 (310)
Q Consensus 32 ~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV 110 (310)
.|..|||||+|.- .++||+|....+|-....+|+.+.+.+ ...+-+|.+|++|+-.|+||.
T Consensus 1066 ~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf------------------~tdLVNPR~iv~D~~rgnLYw 1127 (1289)
T KOG1214|consen 1066 GLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLF------------------YTDLVNPRAIVVDPIRGNLYW 1127 (1289)
T ss_pred cCCCccceeeeeccceeeeeccccchhheeecCCceeeEEE------------------eecccCcceEEeecccCceee
Confidence 6789999999975 479999999999988888877543332 134568999999988999999
Q ss_pred EeCCCc---EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181 111 ADAYSG---LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR 187 (310)
Q Consensus 111 ad~~~g---i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~ 187 (310)
+|+.+. |-+.++++...+.+... .+..|||+.+||-...|-+.|.++ .++--+.++
T Consensus 1128 tDWnRenPkIets~mDG~NrRilin~----DigLPNGLtfdpfs~~LCWvDAGt-----------------~rleC~~p~ 1186 (1289)
T KOG1214|consen 1128 TDWNRENPKIETSSMDGENRRILINT----DIGLPNGLTFDPFSKLLCWVDAGT-----------------KRLECTLPD 1186 (1289)
T ss_pred ccccccCCcceeeccCCccceEEeec----ccCCCCCceeCcccceeeEEecCC-----------------cceeEecCC
Confidence 998753 77778777555555543 355799999999645566777654 355555554
Q ss_pred CCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181 188 SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 188 ~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
.-..+++..+|.+|-+|.-..| .+|.+|+..++|..++..+.
T Consensus 1187 g~gRR~i~~~LqYPF~itsy~~--~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1187 GTGRRVIQNNLQYPFSITSYAD--HFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred CCcchhhhhcccCceeeeeccc--cceeeccccCceEEeecccc
Confidence 3334556789999999977654 59999999999999887654
No 31
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.95 E-value=3.3e-09 Score=77.67 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=61.3
Q ss_pred cceEEeCCCCeEEEEcCCCccCc-cceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC
Q 048181 143 DGLDVDQGTGVVYFTDASGVYDF-RTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN 221 (310)
Q Consensus 143 ndvavd~~~G~lyvtd~~~~~~~-~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~ 221 (310)
||++.-. ..++|+|+.+.-... .... +.....+-|.++.||+ ++.+.+++++.+||||++|||+++|||++...+
T Consensus 1 NDIvavG-~~sFy~TNDhyf~~~~l~~l-E~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~ 76 (86)
T PF01731_consen 1 NDIVAVG-PDSFYVTNDHYFTDPFLRLL-ETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAH 76 (86)
T ss_pred CCEEEEC-cCcEEEECchhhCcHHHHHH-HHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence 5666555 379999987542110 0111 1122345688999997 468889999999999999999999999999999
Q ss_pred eEEEEEec
Q 048181 222 RTLKYWLR 229 (310)
Q Consensus 222 ~I~~~~~~ 229 (310)
.|.+|...
T Consensus 77 ~I~vy~~~ 84 (86)
T PF01731_consen 77 SIHVYKRH 84 (86)
T ss_pred eEEEEEec
Confidence 99999764
No 32
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=2.3e-06 Score=77.17 Aligned_cols=220 Identities=10% Similarity=0.096 Sum_probs=128.9
Q ss_pred ceEEEeCCCCCCCcceEEEccCCCEEEEEeC---CCeEE--EEECC-CceEEeeeecCCCCccccCCCccccCCCCCCce
Q 048181 23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVA---DGRIL--KYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT 96 (310)
Q Consensus 23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~---~g~I~--r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P 96 (310)
.+..+++-..+..|.-|+++++++.+|+-.. .|+|- +++++ |..+.+.. .......|
T Consensus 29 ~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-----------------~~~~g~~p 91 (346)
T COG2706 29 ELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-----------------QTLPGSPP 91 (346)
T ss_pred ccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-----------------cccCCCCC
Confidence 3334444456678999999999976777653 45554 56665 43432210 01122345
Q ss_pred eeEEEecCCC-eEEEEeCCCc---EEEEeCCCCeEEEeec----cCCC----ccccCccceEEeCCCCeEEEEcCCCccC
Q 048181 97 FGLALHYATR-QLYIADAYSG---LLVVGPNGRLATQLAT----GAEG----QAFHFLDGLDVDQGTGVVYFTDASGVYD 164 (310)
Q Consensus 97 ~Gla~d~~~g-~LyVad~~~g---i~~id~~~~~~~~~~~----~~~g----~~~~~pndvavd~~~G~lyvtd~~~~~~ 164 (310)
.-+++| ++| .||+|+...+ ++.+..+ |.+..... ...+ +.-..+.-..++|++..|++.|-+.
T Consensus 92 ~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~--- 166 (346)
T COG2706 92 CYVSVD-EDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT--- 166 (346)
T ss_pred eEEEEC-CCCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC---
Confidence 789998 566 5777887766 3333333 34332211 1111 1122356677888533666777543
Q ss_pred ccceeEeeeecCCCceEEEEcCCCCeEEEee----cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--
Q 048181 165 FRTIVKLNITNDSTGRLLSYNPRSSQVTVLL----RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-- 238 (310)
Q Consensus 165 ~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~----~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-- 238 (310)
-+++.|+.+.|.++... ..-..|.=|+|+|+|+..|+..--+++|.++.++.. .|+.+.
T Consensus 167 --------------Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ 231 (346)
T COG2706 167 --------------DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQ 231 (346)
T ss_pred --------------ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEee
Confidence 24544444445544322 344689999999999999999999999999988863 455432
Q ss_pred --ecCC----C--CCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECCCCcEEE
Q 048181 239 --INFQ----A--KPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISAFGAVLD 287 (310)
Q Consensus 239 --~~l~----g--~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~~G~~~~ 287 (310)
..+| + ....|.+++ ||+ ||++..+..+ -.+.++||+|..++
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~--dGrFLYasNRg~ds------I~~f~V~~~~g~L~ 281 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISP--DGRFLYASNRGHDS------IAVFSVDPDGGKLE 281 (346)
T ss_pred eeccCccccCCCCceeEEEECC--CCCEEEEecCCCCe------EEEEEEcCCCCEEE
Confidence 2333 2 234588999 996 5666655431 23455666644333
No 33
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.86 E-value=7.4e-07 Score=78.43 Aligned_cols=164 Identities=17% Similarity=0.236 Sum_probs=110.8
Q ss_pred cceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc--eEEeeeecCCCCccccCCCccccCCCCCCceeeE
Q 048181 22 PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG--FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGL 99 (310)
Q Consensus 22 ~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gl 99 (310)
...++.++|.++ ..||+++- ++.+|-..-.++..+.++++.= ..++. ..+.-.||
T Consensus 79 ~~~~~~~l~~~~-FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~---------------------y~~EGWGL 135 (264)
T PF05096_consen 79 KVLQSVPLPPRY-FGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFP---------------------YPGEGWGL 135 (264)
T ss_dssp SEEEEEE-TTT---EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE----------------------SSS--EE
T ss_pred cEEEEEECCccc-cceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEe---------------------cCCcceEE
Confidence 345677888664 78999987 4578888889999999999742 12222 12356799
Q ss_pred EEecCCCeEEEEeCCCcEEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181 100 ALHYATRQLYIADAYSGLLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST 178 (310)
Q Consensus 100 a~d~~~g~LyVad~~~gi~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~ 178 (310)
+.| +..||++|+...|+.+||++-+. ..+.-...+.+....|-+..- +|.||..-...
T Consensus 136 t~d--g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~t----------------- 194 (264)
T PF05096_consen 136 TSD--GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQT----------------- 194 (264)
T ss_dssp EEC--SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTS-----------------
T ss_pred EcC--CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCC-----------------
Confidence 974 77899999988899999987433 223222456788999999988 59999865432
Q ss_pred ceEEEEcCCCCeEEEeec-----------C-----CCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 179 GRLLSYNPRSSQVTVLLR-----------N-----LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~~-----------~-----l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
-.|.++||.+|++.-..+ . ...-||||++|+++.+||+-..=.+++++.+.
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 479999999999876542 0 23469999999999999997766778877664
No 34
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.85 E-value=3.3e-08 Score=90.17 Aligned_cols=148 Identities=17% Similarity=0.272 Sum_probs=100.9
Q ss_pred CCCCcceEEEccCC-CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181 32 KAFGGESIAFEPVG-GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI 110 (310)
Q Consensus 32 ~~~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV 110 (310)
...+|-||+++..| +||++|-.- .+++++++++..+.... ..+| ......+++.++ ++|.+|.
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~-------~~~G-------~~~kf~N~ldI~-~~g~vyF 176 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLAD-------EAEG-------KPFKFLNDLDID-PEGVVYF 176 (376)
T ss_pred ccCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccc-------cccC-------eeeeecCceeEc-CCCeEEE
Confidence 33479999999987 888777654 49999999876322110 0011 122345689998 5999999
Q ss_pred EeCCC------------------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 111 ADAYS------------------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 111 ad~~~------------------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
+|... +++++|+.+...+++.. .+.+|||++++++...+.++.+..
T Consensus 177 TDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d~sfvl~~Et~~----------- 240 (376)
T KOG1520|consen 177 TDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPDGSFVLVAETTT----------- 240 (376)
T ss_pred eccccccchhheEEeeecCCCccceEEecCcccchhhhhh-----cccccccccCCCCCCEEEEEeecc-----------
Confidence 98521 37788877755545432 478999999999755666666543
Q ss_pred eecCCCceEEEEc---CCCCeEEEeecCCC-CCceeEEccCCCEEEEEec
Q 048181 173 ITNDSTGRLLSYN---PRSSQVTVLLRNLT-GPAGVAISVDSSFLLVSEF 218 (310)
Q Consensus 173 ~~~~~~G~l~~~d---~~~g~~~~~~~~l~-~pnGIa~~~dg~~Lyv~d~ 218 (310)
.++.||- ++.|+.++++++++ +|+.|-.+++|. +||+-.
T Consensus 241 ------~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVal~ 283 (376)
T KOG1520|consen 241 ------ARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGH-FWVALH 283 (376)
T ss_pred ------ceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCC-EEEEEe
Confidence 3555554 33455588888665 899999999997 677653
No 35
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.82 E-value=1.4e-06 Score=78.90 Aligned_cols=197 Identities=18% Similarity=0.261 Sum_probs=113.8
Q ss_pred cceEEEccCCCEEEEEeCC------------CeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181 36 GESIAFEPVGGAFYTGVAD------------GRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL 101 (310)
Q Consensus 36 Pegia~d~~G~l~~~d~~~------------g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~ 101 (310)
..++.+|+.|+||++|... -+|+.++..... .++.++. .........+.|++
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~--------------~~~~~~s~lndl~V 68 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPP--------------DIAPPDSFLNDLVV 68 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--C--------------CCS-TCGGEEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECCh--------------HHcccccccceEEE
Confidence 4578999999999999642 489999988543 2333211 12234456778999
Q ss_pred ecCC-----CeEEEEeCC-CcEEEEeCCCCeEEEeeccC------------CCccccC---ccceEEeC---CCCeEEEE
Q 048181 102 HYAT-----RQLYIADAY-SGLLVVGPNGRLATQLATGA------------EGQAFHF---LDGLDVDQ---GTGVVYFT 157 (310)
Q Consensus 102 d~~~-----g~LyVad~~-~gi~~id~~~~~~~~~~~~~------------~g~~~~~---pndvavd~---~~G~lyvt 157 (310)
|..+ +.+|++|.. .+|+++|..+++...+.... .|..+.. ..+++.++ ++..||+.
T Consensus 69 D~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~ 148 (287)
T PF03022_consen 69 DVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFH 148 (287)
T ss_dssp ECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEE
T ss_pred EccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEE
Confidence 8533 579999987 46999999998876654321 1112222 23344443 22345554
Q ss_pred cCCCccCccceeEeeeecCCCceEEEEcC------CC-------CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEE
Q 048181 158 DASGVYDFRTIVKLNITNDSTGRLLSYNP------RS-------SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTL 224 (310)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~G~l~~~d~------~~-------g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~ 224 (310)
-.+. .++|++.. .. .+++.+.+......|+++|++|. ||+++...+.|.
T Consensus 149 ~lss-----------------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~ 210 (287)
T PF03022_consen 149 PLSS-----------------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIG 210 (287)
T ss_dssp ETT------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEE
T ss_pred eCCC-----------------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEE
Confidence 3321 23555421 00 12233333334678999999885 999999999999
Q ss_pred EEEecCCCC-Cceee----ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181 225 KYWLRGPRA-NSFDI----INFQAKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 225 ~~~~~~~~~-g~~~~----~~l~g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
+++.+++.. ...++ ...--.||++.++.+.+|.||+....
T Consensus 211 ~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 211 CWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred EEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 999876422 12232 22124799999997446899998754
No 36
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.77 E-value=1.2e-05 Score=74.36 Aligned_cols=216 Identities=10% Similarity=-0.000 Sum_probs=115.9
Q ss_pred cceEEEeCCCC-----CCCcceEEEccCCCEEEEEe--CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCC
Q 048181 22 PTFTKILFPPK-----AFGGESIAFEPVGGAFYTGV--ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICR 94 (310)
Q Consensus 22 ~~~~~~~~~~~-----~~~Pegia~d~~G~l~~~d~--~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 94 (310)
..+.+|++|.+ ...|+.+++.+||+.+|+.. .+..+..+|...+...-.. +...
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei-------------------~vp~ 148 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM-------------------DVPD 148 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE-------------------eCCC
Confidence 34556777754 34555999999998777654 3788989998754322110 1111
Q ss_pred ceeeEEEecCCCeEEE-EeCCCcEEEEeCCCCeEEEeecc-CC---CccccCccceEEeC-CCCeEEEEcCCCccCccce
Q 048181 95 RTFGLALHYATRQLYI-ADAYSGLLVVGPNGRLATQLATG-AE---GQAFHFLDGLDVDQ-GTGVVYFTDASGVYDFRTI 168 (310)
Q Consensus 95 ~P~Gla~d~~~g~LyV-ad~~~gi~~id~~~~~~~~~~~~-~~---g~~~~~pndvavd~-~~G~lyvtd~~~~~~~~~~ 168 (310)
-+...... .+..... .|.....+.++.++. ...-... ++ ..-+..| .+.+ ++..+|+|..
T Consensus 149 ~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~-~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--------- 214 (352)
T TIGR02658 149 CYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGN-PKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--------- 214 (352)
T ss_pred CcEEEEec-CCccEEEeecCceEEEEecCCCc-eEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC---------
Confidence 12222222 2233322 233332334444432 2111111 11 1123344 2233 3345555532
Q ss_pred eEeeeecCCCceEEEEcCCCCeEEEe--ec----C----CCCCce---eEEccCCCEEEEEe---------cCCCeEEEE
Q 048181 169 VKLNITNDSTGRLLSYNPRSSQVTVL--LR----N----LTGPAG---VAISVDSSFLLVSE---------FTGNRTLKY 226 (310)
Q Consensus 169 ~~~~~~~~~~G~l~~~d~~~g~~~~~--~~----~----l~~pnG---Ia~~~dg~~Lyv~d---------~~~~~I~~~ 226 (310)
|.|+.+|..+..+... +. . --.|-| +++++||++|||+. ...++|+.+
T Consensus 215 ----------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 215 ----------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred ----------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence 6777777432211111 11 0 113555 99999999999953 233689999
Q ss_pred EecCCCCCceee-ecCCCCCceeeeCCCCCCc--EEEEEecCCCCCCCCceeeEEECC-CCcEEEEE-ecCC
Q 048181 227 WLRGPRANSFDI-INFQAKPHNIKRNPGLLQT--FWEAAIITRQPAGTPVPIGQRISA-FGAVLDTI-SFEA 293 (310)
Q Consensus 227 ~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~--l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~-~~p~ 293 (310)
|... ++..- ..+...|.+|++++ ||. ||++.... ..|..+|. .++++..+ .+..
T Consensus 285 D~~t---~kvi~~i~vG~~~~~iavS~--Dgkp~lyvtn~~s--------~~VsViD~~t~k~i~~i~~vg~ 343 (352)
T TIGR02658 285 DAKT---GKRLRKIELGHEIDSINVSQ--DAKPLLYALSTGD--------KTLYIFDAETGKELSSVNQLGR 343 (352)
T ss_pred ECCC---CeEEEEEeCCCceeeEEECC--CCCeEEEEeCCCC--------CcEEEEECcCCeEEeeeccCCC
Confidence 8753 22211 22334699999999 997 46666544 25888885 68899998 5553
No 37
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.76 E-value=1.4e-06 Score=76.76 Aligned_cols=175 Identities=19% Similarity=0.169 Sum_probs=92.0
Q ss_pred cceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECC--CceEEeeeecCCCCccccCCCccccCC-CCCCceee
Q 048181 22 PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAP--DGFTDFAFTTPTRSKAVCDGTTNLDLG-PICRRTFG 98 (310)
Q Consensus 22 ~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~--g~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~P~G 98 (310)
..++++++.+ +.-||||++-.+|.+++++-..++++.+..+ ++....+.. . . . ..... .....--|
T Consensus 54 ~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~-~----~-~----~l~~~~~~N~G~EG 122 (248)
T PF06977_consen 54 KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADV-Q----K-I----SLGFPNKGNKGFEG 122 (248)
T ss_dssp -EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEE-E----E-E----E---S---SS--EE
T ss_pred CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhc-e----E-E----ecccccCCCcceEE
Confidence 4578888885 6789999999888766667678888877653 221110000 0 0 0 00000 11222459
Q ss_pred EEEecCCCeEEEEeCC--CcEEEEeC--CCCeEEEeec-cC--CCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181 99 LALHYATRQLYIADAY--SGLLVVGP--NGRLATQLAT-GA--EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 99 la~d~~~g~LyVad~~--~gi~~id~--~~~~~~~~~~-~~--~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~ 171 (310)
|++|+.+++||++.-. .+|+.++. .......... .. ....+.-|.+++++|++|.+|+-....
T Consensus 123 la~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es---------- 192 (248)
T PF06977_consen 123 LAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES---------- 192 (248)
T ss_dssp EEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT----------
T ss_pred EEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC----------
Confidence 9999888999998533 24788875 2222221111 11 122345588999999999999864332
Q ss_pred eeecCCCceEEEEcCCCCeEEEe---e-------cCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181 172 NITNDSTGRLLSYNPRSSQVTVL---L-------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW 227 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~~~~~---~-------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~ 227 (310)
..|..+|.+ |++... . ..+..|.|||++++|+ ||++.- .+..++|.
T Consensus 193 -------~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE-pNlfy~f~ 248 (248)
T PF06977_consen 193 -------RLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE-PNLFYRFE 248 (248)
T ss_dssp -------TEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TTEEEEEE
T ss_pred -------CeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC-CceEEEeC
Confidence 356666654 443221 1 2457899999999996 888764 66888773
No 38
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.69 E-value=8.3e-06 Score=72.14 Aligned_cols=202 Identities=11% Similarity=0.141 Sum_probs=123.9
Q ss_pred CCCCcceEEEccCCCEEEEEe-CCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181 32 KAFGGESIAFEPVGGAFYTGV-ADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY 109 (310)
Q Consensus 32 ~~~~Pegia~d~~G~l~~~d~-~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly 109 (310)
....-.+++|+|+-+.+|+-. .--.|+.++.+|... ++. ......|-+|++- .+|...
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-------------------L~g~~DpE~Ieyi-g~n~fv 143 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-------------------LTGFSDPETIEYI-GGNQFV 143 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-------------------ccccCChhHeEEe-cCCEEE
Confidence 334567899999977666654 445788899888753 322 1235567789984 555555
Q ss_pred EEeCCCc---EEEEeCCCCeEEE----e-eccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181 110 IADAYSG---LLVVGPNGRLATQ----L-ATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL 181 (310)
Q Consensus 110 Vad~~~g---i~~id~~~~~~~~----~-~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l 181 (310)
++|...+ ++.+|.++..+.. + ...... .=....|+|-|++++++||.--. .|- +|
T Consensus 144 i~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr---------------~P~-~I 206 (316)
T COG3204 144 IVDERDRALYLFTVDADTTVISAKVQKIPLGTTNK-KNKGFEGLAWDPVDHRLFVAKER---------------NPI-GI 206 (316)
T ss_pred EEehhcceEEEEEEcCCccEEeccceEEeccccCC-CCcCceeeecCCCCceEEEEEcc---------------CCc-EE
Confidence 5665543 4556666543211 1 011111 11235799999998999997432 222 35
Q ss_pred EEEcCCCCeEEEeec-------C--CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--------ecCCCC
Q 048181 182 LSYNPRSSQVTVLLR-------N--LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--------INFQAK 244 (310)
Q Consensus 182 ~~~d~~~g~~~~~~~-------~--l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--------~~l~g~ 244 (310)
|.++........... . +.--.|+.+++..++|+|-.-..++|..++.+|.-.+...+ ..+| .
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dip-q 285 (316)
T COG3204 207 FEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIP-Q 285 (316)
T ss_pred EEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCC-C
Confidence 555422111111000 0 11236899998888899988889999999988753333222 3345 4
Q ss_pred CceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC
Q 048181 245 PHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF 282 (310)
Q Consensus 245 Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~ 282 (310)
|.|+++|. +|+||+..-.+ ...+|.++
T Consensus 286 aEGiamDd--~g~lYIvSEPn---------lfy~F~~~ 312 (316)
T COG3204 286 AEGIAMDD--DGNLYIVSEPN---------LFYRFTPQ 312 (316)
T ss_pred cceeEECC--CCCEEEEecCC---------cceecccC
Confidence 89999999 99999987765 46777765
No 39
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=2e-05 Score=75.82 Aligned_cols=205 Identities=13% Similarity=0.064 Sum_probs=119.4
Q ss_pred eEEEccCCC-EEEEEeCC--CeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-e
Q 048181 38 SIAFEPVGG-AFYTGVAD--GRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-D 112 (310)
Q Consensus 38 gia~d~~G~-l~~~d~~~--g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d 112 (310)
++.|.|||+ ++|+...+ .+|+.++..++. +.+.. ..+.....++.++...|+++ +
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~--------------------~~g~~~~~~wSPDG~~La~~~~ 281 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS--------------------FPGINGAPRFSPDGKKLALVLS 281 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC--------------------CCCCcCCeeECCCCCEEEEEEe
Confidence 679999986 56665433 468888877543 22210 00111235676333346654 2
Q ss_pred CC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181 113 AY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ 190 (310)
Q Consensus 113 ~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~ 190 (310)
.. ..|+.+|.++++.+.+.... ......++++++..|+++-... ....||++|.++++
T Consensus 282 ~~g~~~Iy~~dl~tg~~~~lt~~~-----~~~~~p~wSpDG~~I~f~s~~~---------------g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 282 KDGQPEIYVVDIATKALTRITRHR-----AIDTEPSWHPDGKSLIFTSERG---------------GKPQIYRVNLASGK 341 (448)
T ss_pred CCCCeEEEEEECCCCCeEECccCC-----CCccceEECCCCCEEEEEECCC---------------CCceEEEEECCCCC
Confidence 22 24999999888766553211 1223567888534566653211 22469999988787
Q ss_pred EEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EEEEEecCC
Q 048181 191 VTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FWEAAIITR 266 (310)
Q Consensus 191 ~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~va~~~~~ 266 (310)
.+.+........+.+++|||++|+++.... .+|+++++++. .... ..- ..-....+.+ ||. |+.+....+
T Consensus 342 ~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g---~~~~lt~~-~~d~~ps~sp--dG~~I~~~~~~~g 415 (448)
T PRK04792 342 VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG---AMQVLTST-RLDESPSVAP--NGTMVIYSTTYQG 415 (448)
T ss_pred EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC---CeEEccCC-CCCCCceECC--CCCEEEEEEecCC
Confidence 766542223345679999999998876543 36888887653 3322 111 1111236777 885 444333322
Q ss_pred CCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 267 QPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 267 ~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
...+..++.+|+....+..+.+
T Consensus 416 ------~~~l~~~~~~G~~~~~l~~~~g 437 (448)
T PRK04792 416 ------KQVLAAVSIDGRFKARLPAGQG 437 (448)
T ss_pred ------ceEEEEEECCCCceEECcCCCC
Confidence 1357778899998888877655
No 40
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.61 E-value=1.5e-06 Score=80.41 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=90.2
Q ss_pred CCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec---------CCC
Q 048181 151 TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF---------TGN 221 (310)
Q Consensus 151 ~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~---------~~~ 221 (310)
..++||+|.... ...++++.+|.+++++.-.++.-..|+|+ ++|||+.||++++ ...
T Consensus 12 ~~~v~V~d~~~~-------------~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 12 ARRVYVLDPGHF-------------AATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred CCEEEEECCccc-------------ccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCC
Confidence 368999997531 11378999999988887777777899997 9999999999999 888
Q ss_pred eEEEEEecCCCCCceeeecCCC--------CCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEec
Q 048181 222 RTLKYWLRGPRANSFDIINFQA--------KPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISF 291 (310)
Q Consensus 222 ~I~~~~~~~~~~g~~~~~~l~g--------~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~ 291 (310)
.|..||...-+ -..+ ..+|. .|..+++++ ||+ |||+..... ..|-++| +.++++..+..
T Consensus 78 ~V~v~D~~t~~-~~~~-i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~-------~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 78 YVEVIDPQTHL-PIAD-IELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPS-------PAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred EEEEEECccCc-EEeE-EccCCCchhhccCccceEEECC--CCCEEEEecCCCC-------CEEEEEECCCCcEEEEEeC
Confidence 99999875321 1111 12222 355999999 995 899876632 3688888 56899999999
Q ss_pred CCCcc
Q 048181 292 EAQYS 296 (310)
Q Consensus 292 p~~~~ 296 (310)
|.++.
T Consensus 147 p~~~~ 151 (352)
T TIGR02658 147 PDCYH 151 (352)
T ss_pred CCCcE
Confidence 87753
No 41
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.61 E-value=4.5e-05 Score=68.42 Aligned_cols=237 Identities=14% Similarity=0.051 Sum_probs=138.9
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccC--CCCCCceeeEEEecCCCeEE
Q 048181 32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDL--GPICRRTFGLALHYATRQLY 109 (310)
Q Consensus 32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~P~Gla~d~~~g~Ly 109 (310)
.|..|.|++.+++ ++++.. ..+|+++........-. .+. ..+|.-..+.. ....-.-+.|++ .++++|
T Consensus 47 ~F~r~MGl~~~~~-~l~~~t--~~qiw~f~~~~n~l~~~--~~~---~~~D~~yvPr~~~~TGdidiHdia~--~~~~l~ 116 (335)
T TIGR03032 47 TFPRPMGLAVSPQ-SLTLGT--RYQLWRFANVDNLLPAG--QTH---PGYDRLYVPRASYVTGDIDAHDLAL--GAGRLL 116 (335)
T ss_pred ccCccceeeeeCC-eEEEEE--cceeEEccccccccccc--ccC---CCCCeEEeeeeeeeccCcchhheee--cCCcEE
Confidence 4678999998754 444444 44788872221110000 000 00010000000 111123456777 466777
Q ss_pred EEeCC-CcEEEEeCCCCeEEE----eeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181 110 IADAY-SGLLVVGPNGRLATQ----LATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY 184 (310)
Q Consensus 110 Vad~~-~gi~~id~~~~~~~~----~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~ 184 (310)
+.+.. +-+-.+++.-...-. +.+....+.=-+.||+|+.. +.--|||--+..-....|. +.+.+|.+. +
T Consensus 117 fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~~~sD~~~gWR----~~~~~gG~v-i 190 (335)
T TIGR03032 117 FVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTALSQSDVADGWR----EGRRDGGCV-I 190 (335)
T ss_pred EEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-CeEEEEEEeeccCCccccc----ccccCCeEE-E
Confidence 77654 447778765432211 22222222224689999985 4566777543211111111 122334333 5
Q ss_pred cCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEe
Q 048181 185 NPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAI 263 (310)
Q Consensus 185 d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~ 263 (310)
|..+++ ++.+++.+|.+.-|. ||+ ||++|+.+++|.+++.+ .|..+. ..+||+|.||.+.. ..++|++.
T Consensus 191 dv~s~e--vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~---~G~~e~Va~vpG~~rGL~f~G---~llvVgmS 260 (335)
T TIGR03032 191 DIPSGE--VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQ---AGKFQPVAFLPGFTRGLAFAG---DFAFVGLS 260 (335)
T ss_pred EeCCCC--EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCC---CCcEEEEEECCCCCcccceeC---CEEEEEec
Confidence 555554 578999999999998 455 99999999999999875 366666 88999999999985 46789988
Q ss_pred cCCCCC-----C-----CCc-eeeEEEC-CCCcEEEEEecCCC
Q 048181 264 ITRQPA-----G-----TPV-PIGQRIS-AFGAVLDTISFEAQ 294 (310)
Q Consensus 264 ~~~~~~-----~-----~~~-~~v~~~~-~~G~~~~~~~~p~~ 294 (310)
-.|+.+ | ... -.+..+| .+|.++..++++..
T Consensus 261 k~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~ 303 (335)
T TIGR03032 261 KLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGV 303 (335)
T ss_pred cccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCc
Confidence 888432 2 122 3356677 57999999998865
No 42
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.58 E-value=2.1e-05 Score=73.41 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=104.5
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-------EeeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181 28 LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-------DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA 100 (310)
Q Consensus 28 ~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla 100 (310)
.+...+..|.+++..|+|.+++.....|++..+..++... .+...+.. ...+..-...+......|.+++
T Consensus 61 ~~a~gLe~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~---Gll~~al~~~fa~~~~~~~~~a 137 (399)
T COG2133 61 VVAQGLEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQG---GLLDIALSPDFAQGRLVYFGIS 137 (399)
T ss_pred cccccccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCC---CccceEecccccccceeeeEEE
Confidence 4456688999999999996555555548777665432111 01100000 0000001123334456788888
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCeE---EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCc--cce---eEee
Q 048181 101 LHYATRQLYIADAYSGLLVVGPNGRLA---TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDF--RTI---VKLN 172 (310)
Q Consensus 101 ~d~~~g~LyVad~~~gi~~id~~~~~~---~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~--~~~---~~~~ 172 (310)
. ..+.+|++... .+.+++....+. ..+....++....+--.|+++|+ |.||||--+..... ++. ...+
T Consensus 138 ~--~~~~~~~~n~~-~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pD-G~Lyvs~G~~~~~~~aq~~~~~~Gk~ 213 (399)
T COG2133 138 E--PGGGLYVANRV-AIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPD-GKLYVTTGSNGDPALAQDNVSLAGKV 213 (399)
T ss_pred e--ecCCceEEEEE-EEEEcCCCccccccccEEeecCCCCCCcCcccEEECCC-CcEEEEeCCCCCcccccCccccccce
Confidence 8 47778887644 477777221222 22333444333556678999995 99999865431000 000 0001
Q ss_pred eecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCC
Q 048181 173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG 220 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~ 220 (310)
++.... .+...|+.+...+++.-++..|.|++|+|....||++|-..
T Consensus 214 ~r~~~a-~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 214 LRIDRA-GIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred eeeccC-cccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 111122 24445555555667777899999999999955699999877
No 43
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.58 E-value=1.3e-05 Score=75.09 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=111.4
Q ss_pred CCEEE-EEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCC-eEEEEeCCCcEEE
Q 048181 45 GGAFY-TGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATR-QLYIADAYSGLLV 119 (310)
Q Consensus 45 G~l~~-~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g-~LyVad~~~gi~~ 119 (310)
+++++ +...++.|.-++.+... ..+. ..+.+ .++++. ++| .+||++....|.+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~~h~~~~~s-~Dgr~~yv~~rdg~vsv 62 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIP---------------------TGGAPHAGLKFS-PDGRYLYVANRDGTVSV 62 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE----------------------STTEEEEEE-T-T-SSEEEEEETTSEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEc---------------------CCCCceeEEEec-CCCCEEEEEcCCCeEEE
Confidence 45554 45568999999987532 2221 22334 457775 555 5999986656999
Q ss_pred EeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCC-
Q 048181 120 VGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL- 198 (310)
Q Consensus 120 id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l- 198 (310)
||+.++++..-.. .| ..|.++++++++..+|+++.. .+.+..+|..+.++...+...
T Consensus 63 iD~~~~~~v~~i~--~G---~~~~~i~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 63 IDLATGKVVATIK--VG---GNPRGIAVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EETTSSSEEEEEE---S---SEEEEEEE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--E
T ss_pred EECCcccEEEEEe--cC---CCcceEEEcCCCCEEEEEecC-----------------CCceeEeccccccceeeccccc
Confidence 9998876422111 12 347899999964457777642 367888898776554333211
Q ss_pred -------CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEE-EEEecCCCC
Q 048181 199 -------TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFW-EAAIITRQP 268 (310)
Q Consensus 199 -------~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~-va~~~~~~~ 268 (310)
+...+|..++.+...+++-...++||.++++.. ..... .....+|.+..+|+ +|+++ +|.....
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--~~~~~~~i~~g~~~~D~~~dp--dgry~~va~~~sn-- 194 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--KNLKVTTIKVGRFPHDGGFDP--DGRYFLVAANGSN-- 194 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--SCEEEEEEE--TTEEEEEE-T--TSSEEEEEEGGGT--
T ss_pred ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--cccceeeecccccccccccCc--ccceeeecccccc--
Confidence 234588888988867777788899999998753 22222 33345799999999 99765 5555442
Q ss_pred CCCCceeeEEECC-CCcEEEEEe
Q 048181 269 AGTPVPIGQRISA-FGAVLDTIS 290 (310)
Q Consensus 269 ~~~~~~~v~~~~~-~G~~~~~~~ 290 (310)
.+..+|. .++.+..+.
T Consensus 195 ------~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 195 ------KIAVIDTKTGKLVALID 211 (369)
T ss_dssp ------EEEEEETTTTEEEEEEE
T ss_pred ------eeEEEeeccceEEEEee
Confidence 4555554 455554443
No 44
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=7e-05 Score=71.79 Aligned_cols=204 Identities=15% Similarity=0.067 Sum_probs=119.2
Q ss_pred ceEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEE
Q 048181 37 ESIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIA 111 (310)
Q Consensus 37 egia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVa 111 (310)
.+++|.|||+ ++|+... ...|+.++.+++. ..+.. ..+.....++. ++| +|+++
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~--------------------~~g~~~~~~~S-pDG~~l~~~ 265 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS--------------------FRGINGAPSFS-PDGRRLALT 265 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc--------------------CCCCccCceEC-CCCCEEEEE
Confidence 3678999986 6666543 3468888877543 22210 00111245776 455 46554
Q ss_pred -eCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181 112 -DAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS 188 (310)
Q Consensus 112 -d~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~ 188 (310)
+.. ..|+.+|.++++.+.+.... + .....++++++..|+++.... ....||.+|..+
T Consensus 266 ~s~~g~~~Iy~~d~~~g~~~~lt~~~-~----~~~~~~~spDG~~l~f~sd~~---------------g~~~iy~~dl~~ 325 (433)
T PRK04922 266 LSRDGNPEIYVMDLGSRQLTRLTNHF-G----IDTEPTWAPDGKSIYFTSDRG---------------GRPQIYRVAASG 325 (433)
T ss_pred EeCCCCceEEEEECCCCCeEECccCC-C----CccceEECCCCCEEEEEECCC---------------CCceEEEEECCC
Confidence 322 24999999888766553211 1 123568888533465543211 123688888776
Q ss_pred CeEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EE-EEEe
Q 048181 189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FW-EAAI 263 (310)
Q Consensus 189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~-va~~ 263 (310)
++.+.+...-.....++++|||+.|+++.... .+|+.+++.+. .... ..-. ......+++ ||+ |+ .+..
T Consensus 326 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---~~~~Lt~~~-~~~~p~~sp--dG~~i~~~s~~ 399 (433)
T PRK04922 326 GSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---SVRTLTPGS-LDESPSFAP--NGSMVLYATRE 399 (433)
T ss_pred CCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC---CeEECCCCC-CCCCceECC--CCCEEEEEEec
Confidence 76655443223345789999999988875433 36888887642 2222 1111 223457888 996 33 3333
Q ss_pred cCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 264 ITRQPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
..+ ..+..++.+|+....+..+.+
T Consensus 400 ~g~-------~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 400 GGR-------GVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred CCc-------eEEEEEECCCCceEEcccCCC
Confidence 222 478889999998888876644
No 45
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.52 E-value=1.6e-05 Score=75.79 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=98.7
Q ss_pred CCCCceeeEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeecc---CCCccccCccceEEeCC------CCeEEEEcCC
Q 048181 91 PICRRTFGLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATG---AEGQAFHFLDGLDVDQG------TGVVYFTDAS 160 (310)
Q Consensus 91 ~~~~~P~Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~---~~g~~~~~pndvavd~~------~G~lyvtd~~ 160 (310)
..+..|.+|++. ++|+|||+... ..|++++..++..+.+... ........+-|||++|+ ++.||++-+.
T Consensus 27 ~GL~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 27 SGLNKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCCCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 356789999996 79999999874 4588998766543332211 11112345779999864 3578987532
Q ss_pred CccCccceeEeeeecCCCceEEEEcCC--CC---eEEEeecCC-----CCCceeEEccCCCEEEEEecC-----------
Q 048181 161 GVYDFRTIVKLNITNDSTGRLLSYNPR--SS---QVTVLLRNL-----TGPAGVAISVDSSFLLVSEFT----------- 219 (310)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~G~l~~~d~~--~g---~~~~~~~~l-----~~pnGIa~~~dg~~Lyv~d~~----------- 219 (310)
..-.. ......+|.|+..+ +. ..+.+...+ +.-..|+|+|||+ ||++--.
T Consensus 106 ~~~~~--------~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~~~ 176 (454)
T TIGR03606 106 KNGDK--------ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGANFFL 176 (454)
T ss_pred cCCCC--------CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcccccC
Confidence 10000 00012356665422 11 123333333 3456899999996 9995221
Q ss_pred ---------------------CCeEEEEEecCCCC-------C-ceee--ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181 220 ---------------------GNRTLKYWLRGPRA-------N-SFDI--INFQAKPHNIKRNPGLLQTFWEAAIITR 266 (310)
Q Consensus 220 ---------------------~~~I~~~~~~~~~~-------g-~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~ 266 (310)
.+.|+|++.+|.-. + ..++ -++- -|-||++|+ +|.||+++++.+
T Consensus 177 ~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~R-Np~Gla~dp--~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 177 PNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHR-NPQGLAFTP--DGTLYASEQGPN 251 (454)
T ss_pred cchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEecc-ccceeEECC--CCCEEEEecCCC
Confidence 23789999886410 0 1233 2332 499999999 999999999985
No 46
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.0002 Score=68.39 Aligned_cols=205 Identities=14% Similarity=0.040 Sum_probs=118.1
Q ss_pred ceEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEE
Q 048181 37 ESIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIA 111 (310)
Q Consensus 37 egia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVa 111 (310)
..+.|.|||+ ++|+... +..|+.++.+++. +.+. ...+.....++. ++| +|+++
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--------------------~~~g~~~~~~~S-pDG~~la~~ 260 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--------------------NFEGLNGAPAWS-PDGSKLAFV 260 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--------------------CCCCCcCCeEEC-CCCCEEEEE
Confidence 5678999986 5566543 3468888877543 2221 001111235676 455 56544
Q ss_pred eC-C--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181 112 DA-Y--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS 188 (310)
Q Consensus 112 d~-~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~ 188 (310)
.. . ..|+.+|.++++.+.+... .+ ......+++++..|+++... .+...||+++..+
T Consensus 261 ~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~ 320 (430)
T PRK00178 261 LSKDGNPEIYVMDLASRQLSRVTNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNG 320 (430)
T ss_pred EccCCCceEEEEECCCCCeEEcccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCC
Confidence 22 2 2499999998876655321 11 12345678854457665321 1234689998877
Q ss_pred CeEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcE-EEEEec
Q 048181 189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTF-WEAAII 264 (310)
Q Consensus 189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l-~va~~~ 264 (310)
++.+.+..........+++|||+.|+++.... ..|+.+++++ +..+. ... .......+.+ ||.. +.+...
T Consensus 321 g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t---g~~~~lt~~-~~~~~p~~sp--dg~~i~~~~~~ 394 (430)
T PRK00178 321 GRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR---GSVRILTDT-SLDESPSVAP--NGTMLIYATRQ 394 (430)
T ss_pred CCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC---CCEEEccCC-CCCCCceECC--CCCEEEEEEec
Confidence 77665543222334578999999998876543 3688888764 23332 211 1222347888 8864 333332
Q ss_pred CCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 265 TRQPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
.+ ...+..++.+|+....+..+.+
T Consensus 395 ~g------~~~l~~~~~~g~~~~~l~~~~g 418 (430)
T PRK00178 395 QG------RGVLMLVSINGRVRLPLPTAQG 418 (430)
T ss_pred CC------ceEEEEEECCCCceEECcCCCC
Confidence 21 1467788888887777766654
No 47
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.00037 Score=66.52 Aligned_cols=202 Identities=9% Similarity=-0.038 Sum_probs=120.6
Q ss_pred eEEEccCCC--EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEE
Q 048181 38 SIAFEPVGG--AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIA 111 (310)
Q Consensus 38 gia~d~~G~--l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVa 111 (310)
.+.|.|||+ +||+... +..|+.++..++. +.+.. ..+......+. ++| +|+++
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--------------------~~g~~~~~~~S-PDG~~la~~ 250 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--------------------SQGMLVVSDVS-KDGSKLLLT 250 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--------------------CCCcEEeeEEC-CCCCEEEEE
Confidence 678999986 5556654 4679999987553 33320 01111223465 444 56554
Q ss_pred eCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181 112 DAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS 188 (310)
Q Consensus 112 d~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~ 188 (310)
... ..|+.++.++++.+.+... .+. . ....++|++..|||+.... ....||++|.++
T Consensus 251 ~~~~g~~~Iy~~dl~~g~~~~LT~~-~~~-d---~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy~~dl~~ 310 (419)
T PRK04043 251 MAPKGQPDIYLYDTNTKTLTQITNY-PGI-D---VNGNFVEDDKRIVFVSDRL---------------GYPNIFMKKLNS 310 (419)
T ss_pred EccCCCcEEEEEECCCCcEEEcccC-CCc-c---CccEECCCCCEEEEEECCC---------------CCceEEEEECCC
Confidence 332 2499999888876665322 211 1 1236888644788875431 124799999988
Q ss_pred CeEEEeecCCCCCceeEEccCCCEEEEEecCC--------CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-E
Q 048181 189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--------NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-F 258 (310)
Q Consensus 189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--------~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l 258 (310)
++.+.+...-. .+ ..++|||+.|.++.... .+|+.+++++. ..+. .. .+.-....+.+ ||. |
T Consensus 311 g~~~rlt~~g~-~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g---~~~~LT~-~~~~~~p~~SP--DG~~I 382 (419)
T PRK04043 311 GSVEQVVFHGK-NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD---YIRRLTA-NGVNQFPRFSS--DGGSI 382 (419)
T ss_pred CCeEeCccCCC-cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---CeEECCC-CCCcCCeEECC--CCCEE
Confidence 88765543211 23 48999999887765433 47898888653 3322 11 11112366888 886 4
Q ss_pred EEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 259 WEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 259 ~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
+.+..... ...+..++.+|+....+....|
T Consensus 383 ~f~~~~~~------~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 383 MFIKYLGN------QSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred EEEEccCC------cEEEEEEecCCCeeEEeecCCC
Confidence 44433322 2468889999998888877655
No 48
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.00023 Score=68.07 Aligned_cols=204 Identities=15% Similarity=0.100 Sum_probs=116.6
Q ss_pred eEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEe
Q 048181 38 SIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIAD 112 (310)
Q Consensus 38 gia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad 112 (310)
+++|.|||+ ++|+... +..|+.++..++. ..+. ...+.....++. ++| +|+++.
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~--------------------~~~g~~~~~~~S-PDG~~la~~~ 258 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA--------------------NFKGSNSAPAWS-PDGRTLAVAL 258 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee--------------------cCCCCccceEEC-CCCCEEEEEE
Confidence 578999986 5565543 3468888877543 2221 001122346776 455 565542
Q ss_pred CC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181 113 AY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS 189 (310)
Q Consensus 113 ~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g 189 (310)
.. ..|+.+|.+++..+.+... .+ ......+++++..|+++.... ..-.||.++..++
T Consensus 259 ~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~wSpDG~~l~f~s~~~---------------g~~~Iy~~~~~~g 318 (427)
T PRK02889 259 SRDGNSQIYTVNADGSGLRRLTQS-SG----IDTEPFFSPDGRSIYFTSDRG---------------GAPQIYRMPASGG 318 (427)
T ss_pred ccCCCceEEEEECCCCCcEECCCC-CC----CCcCeEEcCCCCEEEEEecCC---------------CCcEEEEEECCCC
Confidence 22 2499999887766555321 11 123467888533466542211 1236888887666
Q ss_pred eEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcE-EEEEecC
Q 048181 190 QVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTF-WEAAIIT 265 (310)
Q Consensus 190 ~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l-~va~~~~ 265 (310)
+.+.+...-......+|+|||++|+++.... .+|+.+++++. .... ..- ..-....+.+ ||.. +.+....
T Consensus 319 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---~~~~lt~~-~~~~~p~~sp--dg~~l~~~~~~~ 392 (427)
T PRK02889 319 AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG---QVTALTDT-TRDESPSFAP--NGRYILYATQQG 392 (427)
T ss_pred ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC---CeEEccCC-CCccCceECC--CCCEEEEEEecC
Confidence 6554432222234578999999887765443 36888887642 2222 111 1234568888 8863 3333322
Q ss_pred CCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 266 RQPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 266 ~~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
+ ...+..++.+|+....+..|.|
T Consensus 393 g------~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 393 G------RSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred C------CEEEEEEECCCCceEEeecCCC
Confidence 1 1457788899998888887766
No 49
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=0.00024 Score=68.10 Aligned_cols=205 Identities=10% Similarity=0.001 Sum_probs=118.6
Q ss_pred cceEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEE
Q 048181 36 GESIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYI 110 (310)
Q Consensus 36 Pegia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyV 110 (310)
-..++|.|||+ ++|++.. +..|+.++..++. ..+. ...+.....++. ++| .|++
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--------------------~~~g~~~~~~~S-PDG~~la~ 262 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--------------------NFPGMTFAPRFS-PDGRKVVM 262 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--------------------cCCCcccCcEEC-CCCCEEEE
Confidence 34678999986 6666543 4679888877543 2221 001112245675 455 4544
Q ss_pred EeC-C--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181 111 ADA-Y--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR 187 (310)
Q Consensus 111 ad~-~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~ 187 (310)
+.. . ..|+.+|.++++.+.+... .+ ......++|++..|+++.... ....||++|.+
T Consensus 263 ~~~~~g~~~Iy~~d~~~~~~~~Lt~~-~~----~~~~~~~spDG~~i~f~s~~~---------------g~~~Iy~~d~~ 322 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSGTTTRLTDS-PA----IDTSPSYSPDGSQIVFESDRS---------------GSPQLYVMNAD 322 (435)
T ss_pred EEecCCCceEEEEECCCCceEEccCC-CC----ccCceeEcCCCCEEEEEECCC---------------CCCeEEEEECC
Confidence 422 2 3499999988876665321 11 123567888533465543211 12469999987
Q ss_pred CCeEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcE-EEEEe
Q 048181 188 SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTF-WEAAI 263 (310)
Q Consensus 188 ~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l-~va~~ 263 (310)
+++.+.+...-..-+..+|+|||+.|+++.... .+|+.+++++. .... .. ........+.+ ||+. +.+..
T Consensus 323 g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---~~~~lt~-~~~~~~p~~sp--DG~~i~~~~~ 396 (435)
T PRK05137 323 GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---GERILTS-GFLVEGPTWAP--NGRVIMFFRQ 396 (435)
T ss_pred CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---ceEeccC-CCCCCCCeECC--CCCEEEEEEc
Confidence 777766554322335688999999988876433 47888887643 2222 11 11345678888 8863 33333
Q ss_pred -cCCCCCCCCceeeEEECCCCcEEEEEec
Q 048181 264 -ITRQPAGTPVPIGQRISAFGAVLDTISF 291 (310)
Q Consensus 264 -~~~~~~~~~~~~v~~~~~~G~~~~~~~~ 291 (310)
..+. ....+.+++.+|+....+..
T Consensus 397 ~~~~~----~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 397 TPGSG----GAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred cCCCC----CcceEEEEECCCCceEEccC
Confidence 2210 01368888988876666553
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.41 E-value=0.0006 Score=58.92 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=121.5
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC-CC
Q 048181 37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA-YS 115 (310)
Q Consensus 37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~-~~ 115 (310)
..+.+.++++.+++...++.|..++.......... .........+.+. ++++++++.. ..
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~------------------~~~~~~i~~~~~~-~~~~~~~~~~~~~ 115 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTL------------------TGHTSYVSSVAFS-PDGRILSSSSRDK 115 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE------------------eccCCcEEEEEEc-CCCCEEEEecCCC
Confidence 48889998877778777899988887643211100 0112245678886 5567777655 44
Q ss_pred cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181 116 GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL 195 (310)
Q Consensus 116 gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~ 195 (310)
.+..++..+++...... . .......++++++ +.++++... +|.+..+|..+++.....
T Consensus 116 ~i~~~~~~~~~~~~~~~---~-~~~~i~~~~~~~~-~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~ 173 (289)
T cd00200 116 TIKVWDVETGKCLTTLR---G-HTDWVNSVAFSPD-GTFVASSSQ-----------------DGTIKLWDLRTGKCVATL 173 (289)
T ss_pred eEEEEECCCcEEEEEec---c-CCCcEEEEEEcCc-CCEEEEEcC-----------------CCcEEEEEccccccceeE
Confidence 58888877544322222 1 1234678899984 666665431 356777777654433322
Q ss_pred c-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCc
Q 048181 196 R-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPV 273 (310)
Q Consensus 196 ~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~ 273 (310)
. .-.....++++++++.++++.. .+.|..|++.... .... .........+++++ ++.++++....
T Consensus 174 ~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~-------- 240 (289)
T cd00200 174 TGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGK--CLGTLRGHENGVNSVAFSP--DGYLLASGSED-------- 240 (289)
T ss_pred ecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCc--eecchhhcCCceEEEEEcC--CCcEEEEEcCC--------
Confidence 2 2235689999999987777665 7889888875311 1111 12233567899998 88887776622
Q ss_pred eeeEEECCC-CcEEEEEe
Q 048181 274 PIGQRISAF-GAVLDTIS 290 (310)
Q Consensus 274 ~~v~~~~~~-G~~~~~~~ 290 (310)
+.+..++.+ ++....+.
T Consensus 241 ~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 241 GTIRVWDLRTGECVQTLS 258 (289)
T ss_pred CcEEEEEcCCceeEEEcc
Confidence 245566643 55555555
No 51
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.39 E-value=0.00052 Score=65.05 Aligned_cols=205 Identities=15% Similarity=0.102 Sum_probs=118.4
Q ss_pred eEEEccCCC-EEEEEeCC--CeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEe
Q 048181 38 SIAFEPVGG-AFYTGVAD--GRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIAD 112 (310)
Q Consensus 38 gia~d~~G~-l~~~d~~~--g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad 112 (310)
+++|.+||+ ++|+...+ .+|+.++..++ ...+.. ..+.....++. ++| .|+++.
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--------------------~~~~~~~~~~s-pDg~~l~~~~ 252 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--------------------FPGMNGAPAFS-PDGSKLAVSL 252 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--------------------CCCCccceEEC-CCCCEEEEEE
Confidence 567888987 44554332 57888887644 332210 11122346776 455 576653
Q ss_pred CC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181 113 AY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS 189 (310)
Q Consensus 113 ~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g 189 (310)
.. ..|+.++.+++..+.+... .+ .....++++++..|+++.... ....||.+|..++
T Consensus 253 ~~~~~~~i~~~d~~~~~~~~l~~~-~~----~~~~~~~s~dg~~l~~~s~~~---------------g~~~iy~~d~~~~ 312 (417)
T TIGR02800 253 SKDGNPDIYVMDLDGKQLTRLTNG-PG----IDTEPSWSPDGKSIAFTSDRG---------------GSPQIYMMDADGG 312 (417)
T ss_pred CCCCCccEEEEECCCCCEEECCCC-CC----CCCCEEECCCCCEEEEEECCC---------------CCceEEEEECCCC
Confidence 32 2499999888766555321 11 112446777533565543211 1246899988777
Q ss_pred eEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCc-EEEEEecCC
Q 048181 190 QVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQT-FWEAAIITR 266 (310)
Q Consensus 190 ~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~-l~va~~~~~ 266 (310)
+.+.+.........++++|||++|+++.... .+|+.+++++ +..+............+.+ ||+ |+.+.....
T Consensus 313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~---~~~~~l~~~~~~~~p~~sp--dg~~l~~~~~~~~ 387 (417)
T TIGR02800 313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG---GGERVLTDTGLDESPSFAP--NGRMILYATTRGG 387 (417)
T ss_pred CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC---CCeEEccCCCCCCCceECC--CCCEEEEEEeCCC
Confidence 7666554444566889999999888876543 3788888764 2233211111233456777 775 444443322
Q ss_pred CCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 267 QPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 267 ~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
...+..++.+|+....+..|.+
T Consensus 388 ------~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 388 ------RGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred ------cEEEEEEECCCceeeECCCCCC
Confidence 1356667789998888877754
No 52
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.36 E-value=1.8e-05 Score=67.93 Aligned_cols=139 Identities=15% Similarity=0.226 Sum_probs=85.9
Q ss_pred EEccCCCEEEEEeC----------CCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181 40 AFEPVGGAFYTGVA----------DGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY 109 (310)
Q Consensus 40 a~d~~G~l~~~d~~----------~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly 109 (310)
-+||+|+ ||.+.. .|.++++-++++.+.+ -...+-|+||++|.+...+|
T Consensus 115 kvdP~Gr-yy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i--------------------~~~v~IsNgl~Wd~d~K~fY 173 (310)
T KOG4499|consen 115 KVDPDGR-YYGGTMADFGDDLEPIGGELYSWLAGHQVELI--------------------WNCVGISNGLAWDSDAKKFY 173 (310)
T ss_pred ccCCCCc-eeeeeeccccccccccccEEEEeccCCCceee--------------------ehhccCCccccccccCcEEE
Confidence 4678888 676642 3555555555444322 13445688999997778899
Q ss_pred EEeCCC-cE--EEEeCCCCeEE---Eeecc--CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181 110 IADAYS-GL--LVVGPNGRLAT---QLATG--AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL 181 (310)
Q Consensus 110 Vad~~~-gi--~~id~~~~~~~---~~~~~--~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l 181 (310)
+.|..+ .| +.+|..+|.+. .+... .....-..|+|+++|. +|+|||+..+. |++
T Consensus 174 ~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng-----------------~~V 235 (310)
T KOG4499|consen 174 YIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNG-----------------GTV 235 (310)
T ss_pred EEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecC-----------------cEE
Confidence 998764 46 56667776542 22111 1111234699999999 59999997654 799
Q ss_pred EEEcCCCCeEEEee-cCCCCCceeEEccC-CCEEEEEe
Q 048181 182 LSYNPRSSQVTVLL-RNLTGPAGVAISVD-SSFLLVSE 217 (310)
Q Consensus 182 ~~~d~~~g~~~~~~-~~l~~pnGIa~~~d-g~~Lyv~d 217 (310)
+++||.+|++-.-. =....-...||--. =..|||+-
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 99999998753211 12233356666532 13566654
No 53
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.34 E-value=7.3e-05 Score=70.13 Aligned_cols=168 Identities=14% Similarity=0.173 Sum_probs=95.2
Q ss_pred ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181 23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH 102 (310)
Q Consensus 23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d 102 (310)
.+.+++..+. -+-++++.+||+.+|+...++.|..+|...... ++. ...+..|.|+++.
T Consensus 28 ~~~~i~~~~~--~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~------------------i~~G~~~~~i~~s 86 (369)
T PF02239_consen 28 VVARIPTGGA--PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VAT------------------IKVGGNPRGIAVS 86 (369)
T ss_dssp EEEEEE-STT--EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEE------------------EE-SSEEEEEEE-
T ss_pred EEEEEcCCCC--ceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEE------------------EecCCCcceEEEc
Confidence 4556666543 256788999999888888899999999875432 111 1345689999997
Q ss_pred cCCC-eEEEEeCC-CcEEEEeCCCCeEEE-eecc-CCC-ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCC
Q 048181 103 YATR-QLYIADAY-SGLLVVGPNGRLATQ-LATG-AEG-QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDS 177 (310)
Q Consensus 103 ~~~g-~LyVad~~-~gi~~id~~~~~~~~-~~~~-~~g-~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~ 177 (310)
++| .+|+++.. ..+..+|.++.+... +... ... .+-.+..++..++. ..-|+.. ...
T Consensus 87 -~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~-~~~fVv~----------------lkd 148 (369)
T PF02239_consen 87 -PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG-RPEFVVN----------------LKD 148 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS-SSEEEEE----------------ETT
T ss_pred -CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC-CCEEEEE----------------Ecc
Confidence 555 57777754 458889988765432 2111 110 11123345555552 4434322 123
Q ss_pred CceEEEEcCCCCe-E-EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 178 TGRLLSYNPRSSQ-V-TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 178 ~G~l~~~d~~~g~-~-~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
.++++.+|-...+ + ....+--.+|.+..++|+|+++|++....+.|-.++..
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence 4788888754321 1 12333446899999999999999987777777666643
No 54
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=0.00081 Score=64.44 Aligned_cols=203 Identities=14% Similarity=0.093 Sum_probs=116.5
Q ss_pred ceEEEccCCC-EEEEEe--CCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEE
Q 048181 37 ESIAFEPVGG-AFYTGV--ADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIA 111 (310)
Q Consensus 37 egia~d~~G~-l~~~d~--~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVa 111 (310)
.+++|.|||. +.|+.. .+..|+.++..++. +.+. ...+.....++. ++| .|+++
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--------------------~~~~~~~~~~~S-PDG~~La~~ 260 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------------SFPRHNGAPAFS-PDGSKLAFA 260 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--------------------CCCCCcCCeEEC-CCCCEEEEE
Confidence 3789999986 555543 23467777766443 2221 000111235786 455 56655
Q ss_pred eCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEE-cCCCccCccceeEeeeecCCCceEEEEcC
Q 048181 112 DAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFT-DASGVYDFRTIVKLNITNDSTGRLLSYNP 186 (310)
Q Consensus 112 d~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvt-d~~~~~~~~~~~~~~~~~~~~G~l~~~d~ 186 (310)
... ..|+.+|.++++.+.+... . ......+++|+ |+ |+++ +... .-.||++|.
T Consensus 261 ~~~~g~~~I~~~d~~tg~~~~lt~~-~----~~~~~~~wSPD-G~~I~f~s~~~g----------------~~~Iy~~d~ 318 (429)
T PRK03629 261 LSKTGSLNLYVMDLASGQIRQVTDG-R----SNNTEPTWFPD-SQNLAYTSDQAG----------------RPQVYKVNI 318 (429)
T ss_pred EcCCCCcEEEEEECCCCCEEEccCC-C----CCcCceEECCC-CCEEEEEeCCCC----------------CceEEEEEC
Confidence 322 2499999988877665322 1 12346788995 64 5444 3211 236899998
Q ss_pred CCCeEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEE-E
Q 048181 187 RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEA-A 262 (310)
Q Consensus 187 ~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va-~ 262 (310)
++++.+.+..........+++|||++|+++.... ..|+.+++++ +..+. .. ...-....+.+ ||...+. .
T Consensus 319 ~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~---g~~~~Lt~-~~~~~~p~~Sp--DG~~i~~~s 392 (429)
T PRK03629 319 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGVQVLTD-TFLDETPSIAP--NGTMVIYSS 392 (429)
T ss_pred CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC---CCeEEeCC-CCCCCCceECC--CCCEEEEEE
Confidence 8777666544333445789999999887765433 4688888764 33322 11 11112456888 9964333 3
Q ss_pred ecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 263 IITRQPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 263 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
.... ...+..++.+|+....+....+
T Consensus 393 ~~~~------~~~l~~~~~~G~~~~~l~~~~~ 418 (429)
T PRK03629 393 SQGM------GSVLNLVSTDGRFKARLPATDG 418 (429)
T ss_pred cCCC------ceEEEEEECCCCCeEECccCCC
Confidence 3221 1346667889988777765333
No 55
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=98.30 E-value=5e-05 Score=74.18 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=53.7
Q ss_pred ccccCccceEEeCCCCeEEEEcCCCccC-ccce-eEeeeecCCCceEEEEcCCCC-------eEEEee------------
Q 048181 137 QAFHFLDGLDVDQGTGVVYFTDASGVYD-FRTI-VKLNITNDSTGRLLSYNPRSS-------QVTVLL------------ 195 (310)
Q Consensus 137 ~~~~~pndvavd~~~G~lyvtd~~~~~~-~~~~-~~~~~~~~~~G~l~~~d~~~g-------~~~~~~------------ 195 (310)
.+|..|.|+++++.+|.+||+-+...-. .... ..........|.|+++++..+ +.+.+.
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4789999999999889999998765310 0000 000012345689999987654 333322
Q ss_pred ------cCCCCCceeEEccCCCEEEEEecC
Q 048181 196 ------RNLTGPAGVAISVDSSFLLVSEFT 219 (310)
Q Consensus 196 ------~~l~~pnGIa~~~dg~~Lyv~d~~ 219 (310)
..+..|.+|+|+++|+ ||+++-.
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~ 455 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDG 455 (524)
T ss_pred cCcccCCCcCCCCceEECCCCC-EEEEeCC
Confidence 2367899999999998 6766543
No 56
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.26 E-value=2.1e-05 Score=72.74 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=91.9
Q ss_pred CceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeec--cCCCccccCccceEEeCC---CCeEEEEcCCCccCccce
Q 048181 94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLAT--GAEGQAFHFLDGLDVDQG---TGVVYFTDASGVYDFRTI 168 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~--~~~g~~~~~pndvavd~~---~G~lyvtd~~~~~~~~~~ 168 (310)
.+|.+|++. ++|+|||++....|++++.++.....+.. .........+-+++++|+ ++.||+.-+......
T Consensus 2 ~~P~~~a~~-pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~--- 77 (331)
T PF07995_consen 2 NNPRSMAFL-PDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG--- 77 (331)
T ss_dssp SSEEEEEEE-TTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS---
T ss_pred CCceEEEEe-CCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC---
Confidence 479999997 78999999986558889855432133322 222223345679999993 489998765210000
Q ss_pred eEeeeecCCCceEEEEcCCCC-----eEEEeec-------CCCCCceeEEccCCCEEEEEec-------------CCCeE
Q 048181 169 VKLNITNDSTGRLLSYNPRSS-----QVTVLLR-------NLTGPAGVAISVDSSFLLVSEF-------------TGNRT 223 (310)
Q Consensus 169 ~~~~~~~~~~G~l~~~d~~~g-----~~~~~~~-------~l~~pnGIa~~~dg~~Lyv~d~-------------~~~~I 223 (310)
....-+|+|+....+ ..+.+.. ......+|+|+||| +|||+-- ..+.|
T Consensus 78 ------~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i 150 (331)
T PF07995_consen 78 ------GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI 150 (331)
T ss_dssp ------SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred ------CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence 000124555432211 1222221 23455789999999 6999742 24689
Q ss_pred EEEEecCCCC----------Cceee--ecCCCCCceeeeCCCCC-CcEEEEEecCC
Q 048181 224 LKYWLRGPRA----------NSFDI--INFQAKPHNIKRNPGLL-QTFWEAAIITR 266 (310)
Q Consensus 224 ~~~~~~~~~~----------g~~~~--~~l~g~Pdgl~~d~~~d-G~l~va~~~~~ 266 (310)
+|++.+|.-. ...++ .++- -|-+|++|+ . |+||+++.+..
T Consensus 151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~--~tg~l~~~d~G~~ 203 (331)
T PF07995_consen 151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDP--NTGRLWAADNGPD 203 (331)
T ss_dssp EEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEET--TTTEEEEEEE-SS
T ss_pred EEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEEC--CCCcEEEEccCCC
Confidence 9999876410 01233 3343 389999999 8 99999998763
No 57
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.24 E-value=0.00092 Score=59.08 Aligned_cols=187 Identities=14% Similarity=0.138 Sum_probs=110.0
Q ss_pred eEEEeCCCCCCCcceEEEccCCCEEEEEe--CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181 24 FTKILFPPKAFGGESIAFEPVGGAFYTGV--ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL 101 (310)
Q Consensus 24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~--~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~ 101 (310)
+++++-. .-.+-+|+.+..+|.+|-+.- ...+|++++++++...-.. .+ +..-.--||++
T Consensus 36 v~~ypHd-~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~----------------~l-~~~~FgEGit~ 97 (264)
T PF05096_consen 36 VETYPHD-PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV----------------PL-PPRYFGEGITI 97 (264)
T ss_dssp EEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE----------------E--TTT--EEEEEE
T ss_pred EEECCCC-CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE----------------EC-CccccceeEEE
Confidence 3444443 235789999987888665553 3458999998854321110 01 11123348998
Q ss_pred ecCCCeEEEEeCCCc-EEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCc
Q 048181 102 HYATRQLYIADAYSG-LLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG 179 (310)
Q Consensus 102 d~~~g~LyVad~~~g-i~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G 179 (310)
. +++||.-....+ .+++|+++-+. ..+. +++++ -|++.| +..||+||.+.
T Consensus 98 ~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~--y~~EG----WGLt~d--g~~Li~SDGS~------------------ 149 (264)
T PF05096_consen 98 L--GDKLYQLTWKEGTGFVYDPNTLKKIGTFP--YPGEG----WGLTSD--GKRLIMSDGSS------------------ 149 (264)
T ss_dssp E--TTEEEEEESSSSEEEEEETTTTEEEEEEE---SSS------EEEEC--SSCEEEE-SSS------------------
T ss_pred E--CCEEEEEEecCCeEEEEccccceEEEEEe--cCCcc----eEEEcC--CCEEEEECCcc------------------
Confidence 5 789998878766 78899886432 2332 23322 478866 47899999753
Q ss_pred eEEEEcCCCCeEE----Eeec--CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee----eecC--------
Q 048181 180 RLLSYNPRSSQVT----VLLR--NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD----IINF-------- 241 (310)
Q Consensus 180 ~l~~~d~~~g~~~----~~~~--~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~----~~~l-------- 241 (310)
+|+.+||++-+.. +... .+..-|=+.+- +| .||..-..+.+|.++++.. |.+. +.++
T Consensus 150 ~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~t---G~V~~~iDls~L~~~~~~~~ 224 (264)
T PF05096_consen 150 RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPET---GKVVGWIDLSGLRPEVGRDK 224 (264)
T ss_dssp EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTT
T ss_pred ceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCC---CeEEEEEEhhHhhhcccccc
Confidence 6888888654322 2222 23455778776 56 5999999999999999763 4432 1111
Q ss_pred -----CCCCceeeeCCCCCCcEEEEE
Q 048181 242 -----QAKPHNIKRNPGLLQTFWEAA 262 (310)
Q Consensus 242 -----~g~Pdgl~~d~~~dG~l~va~ 262 (310)
...-.|||.|++ .+.+||+-
T Consensus 225 ~~~~~~dVLNGIAyd~~-~~~l~vTG 249 (264)
T PF05096_consen 225 SRQPDDDVLNGIAYDPE-TDRLFVTG 249 (264)
T ss_dssp ST--TTS-EEEEEEETT-TTEEEEEE
T ss_pred cccccCCeeEeEeEeCC-CCEEEEEe
Confidence 134689999874 56899985
No 58
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.23 E-value=0.00014 Score=64.43 Aligned_cols=178 Identities=16% Similarity=0.152 Sum_probs=96.9
Q ss_pred eecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEE--CCCceEEeeeecCCCCccccCCCccccCCCCCCcee
Q 048181 20 SIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQ--APDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF 97 (310)
Q Consensus 20 ~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~--~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~ 97 (310)
.-+-++++++++ +.-||+|++-.+|...++|-..++++.+. +++........ +...+. .......--
T Consensus 116 ~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~-----~i~L~~-----~~k~N~GfE 184 (316)
T COG3204 116 EGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQ-----KIPLGT-----TNKKNKGFE 184 (316)
T ss_pred CCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccce-----EEeccc-----cCCCCcCce
Confidence 345678888886 88999999998888777787888888764 44333222110 000000 001122234
Q ss_pred eEEEecCCCeEEEEeCCC--cEEEEeCCCCeEEEeeccCC--Cc--cccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181 98 GLALHYATRQLYIADAYS--GLLVVGPNGRLATQLATGAE--GQ--AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~~--gi~~id~~~~~~~~~~~~~~--g~--~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~ 171 (310)
|+|+|+.+++||++-..+ +|+.++........-..... .. -+.-..++.+++.++.++|=.
T Consensus 185 GlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS------------- 251 (316)
T COG3204 185 GLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLS------------- 251 (316)
T ss_pred eeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEe-------------
Confidence 999998899999996553 57877632211111000000 00 011223344444334444311
Q ss_pred eeecCCCceEEEEcCCCCeE-EE---------eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181 172 NITNDSTGRLLSYNPRSSQV-TV---------LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWL 228 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~~-~~---------~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~ 228 (310)
..+..|..+|.+ |++ .. +...++.|.|||.+++|+ ||++. ..+..+||..
T Consensus 252 ----~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvS-EPnlfy~F~~ 311 (316)
T COG3204 252 ----DESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVS-EPNLFYRFTP 311 (316)
T ss_pred ----cCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEe-cCCcceeccc
Confidence 123445555554 322 11 234577899999999997 77653 3455666654
No 59
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.20 E-value=0.00078 Score=66.27 Aligned_cols=164 Identities=17% Similarity=0.280 Sum_probs=109.5
Q ss_pred CCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181 31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL 108 (310)
Q Consensus 31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L 108 (310)
|.+..-.++++.|||.++.++..+|+|-.++...+. .+|. .....-.++.+. ..|+.
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt--------------------eHts~Vt~v~f~-~~g~~ 406 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT--------------------EHTSGVTAVQFT-ARGNV 406 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec--------------------cCCCceEEEEEE-ecCCE
Confidence 445666788888888888888888888888876543 2321 222344588886 67887
Q ss_pred EEEeCCCc-EEEEeCCCCe-EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181 109 YIADAYSG-LLVVGPNGRL-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP 186 (310)
Q Consensus 109 yVad~~~g-i~~id~~~~~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~ 186 (310)
.++..-.| |...|.+..+ .+++..+. | ...+-+|+|| .|.|.++..-..| .|+.++.
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTft~P~---p-~QfscvavD~-sGelV~AG~~d~F----------------~IfvWS~ 465 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTFTSPE---P-IQFSCVAVDP-SGELVCAGAQDSF----------------EIFVWSV 465 (893)
T ss_pred EEEeecCCeEEeeeecccceeeeecCCC---c-eeeeEEEEcC-CCCEEEeeccceE----------------EEEEEEe
Confidence 77655444 7777876432 23332221 2 2346899999 5988887654322 3677777
Q ss_pred CCCeEEEeecCCCCC-ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee
Q 048181 187 RSSQVTVLLRNLTGP-AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI 238 (310)
Q Consensus 187 ~~g~~~~~~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~ 238 (310)
++|++.-++.+-..| -|++|+|+|+ ++++-+....|+..++-+. .+++|.
T Consensus 466 qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEt 516 (893)
T KOG0291|consen 466 QTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVET 516 (893)
T ss_pred ecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc-Cceeee
Confidence 788876666666666 5899999998 6788888998888887653 344443
No 60
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.18 E-value=0.00015 Score=70.95 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=67.8
Q ss_pred ceEEEEcCCC-----CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCC---Ccee----e-e--cCCC
Q 048181 179 GRLLSYNPRS-----SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRA---NSFD----I-I--NFQA 243 (310)
Q Consensus 179 G~l~~~d~~~-----g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~---g~~~----~-~--~l~g 243 (310)
++|..+|..+ .++...+.--..|-|+++||||+++|++....+.|..+++..-+. +..+ + . .+--
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 3577777765 244444555568999999999999999999999999999864210 1111 1 1 2223
Q ss_pred CCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC
Q 048181 244 KPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF 282 (310)
Q Consensus 244 ~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~ 282 (310)
.|-..++|. +|+.|++++.-. +++++|-+
T Consensus 376 GPLHTaFDg--~G~aytslf~ds--------qv~kwn~~ 404 (635)
T PRK02888 376 GPLHTAFDG--RGNAYTTLFLDS--------QIVKWNIE 404 (635)
T ss_pred CcceEEECC--CCCEEEeEeecc--------eeEEEehH
Confidence 599999999 999999999863 67777743
No 61
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.0018 Score=61.96 Aligned_cols=200 Identities=17% Similarity=0.156 Sum_probs=112.6
Q ss_pred cceEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEE
Q 048181 36 GESIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYI 110 (310)
Q Consensus 36 Pegia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyV 110 (310)
-.+++|.|||+ ++|+... +..|+.++..++. +.+.. ..+.-...++. ++|+ |++
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~--------------------~~g~~~~~~wS-PDG~~La~ 264 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS--------------------FRGHNGAPAFS-PDGSRLAF 264 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec--------------------CCCccCceeEC-CCCCEEEE
Confidence 35689999986 5555543 3468888876543 22210 00111246776 5664 555
Q ss_pred EeCCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181 111 ADAYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP 186 (310)
Q Consensus 111 ad~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~ 186 (310)
+.... .|+.+|.++++.+.+... . ......+++|+ |+ |+++-... ..-+||.++.
T Consensus 265 ~~~~~g~~~Iy~~d~~~~~~~~lt~~-~----~~~~~~~wSpD-G~~i~f~s~~~---------------g~~~I~~~~~ 323 (429)
T PRK01742 265 ASSKDGVLNIYVMGANGGTPSQLTSG-A----GNNTEPSWSPD-GQSILFTSDRS---------------GSPQVYRMSA 323 (429)
T ss_pred EEecCCcEEEEEEECCCCCeEeeccC-C----CCcCCEEECCC-CCEEEEEECCC---------------CCceEEEEEC
Confidence 43222 388899887766554321 1 12346788995 65 66553211 1236888887
Q ss_pred CCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181 187 RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 187 ~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
.++..+.+ ... . ...+++|||++|+++.. ..++++++.+ +..+. ... .-....+.+ ||+..+....
T Consensus 324 ~~~~~~~l-~~~-~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~---g~~~~lt~~~--~~~~~~~sP--dG~~i~~~s~ 391 (429)
T PRK01742 324 SGGGASLV-GGR-G-YSAQISADGKTLVMING--DNVVKQDLTS---GSTEVLSSTF--LDESPSISP--NGIMIIYSST 391 (429)
T ss_pred CCCCeEEe-cCC-C-CCccCCCCCCEEEEEcC--CCEEEEECCC---CCeEEecCCC--CCCCceECC--CCCEEEEEEc
Confidence 65555443 221 1 34789999998877644 5678888754 33222 121 123466888 9975554433
Q ss_pred CCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181 265 TRQPAGTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
.+. ...+..++.+|+....+....+
T Consensus 392 ~g~-----~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 392 QGL-----GKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred CCC-----ceEEEEEECCCCceEEccCCCC
Confidence 210 1123345789998888865544
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.15 E-value=0.0026 Score=54.92 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=110.2
Q ss_pred CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC-
Q 048181 35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA- 113 (310)
Q Consensus 35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~- 113 (310)
...++.+.+++.++++...++.|..++.......... .........++++ +++.++++..
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------~~~~~~i~~~~~~-~~~~~l~~~~~ 155 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL------------------RGHTDWVNSVAFS-PDGTFVASSSQ 155 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe------------------ccCCCcEEEEEEc-CcCCEEEEEcC
Confidence 5778899988887777776899998887632221110 1122345678887 5566666544
Q ss_pred CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC-eEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181 114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG-VVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT 192 (310)
Q Consensus 114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G-~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~ 192 (310)
...+..+|..+++....... .-.....++++++ + .++++.. +|.+..+|..+++..
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~~------------------~~~i~i~d~~~~~~~ 212 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTG----HTGEVNSVAFSPD-GEKLLSSSS------------------DGTIKLWDLSTGKCL 212 (289)
T ss_pred CCcEEEEEccccccceeEec----CccccceEEECCC-cCEEEEecC------------------CCcEEEEECCCCcee
Confidence 44488888765443222111 1124578899985 6 5555542 366777877655443
Q ss_pred Eee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181 193 VLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 193 ~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
... ..-.....+++++++. ++++....+.|+.|++... ..... .........+++++ +|+++++...
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~ 281 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTG--ECVQTLSGHTNSVTSLAWSP--DGKRLASGSA 281 (289)
T ss_pred cchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCc--eeEEEccccCCcEEEEEECC--CCCEEEEecC
Confidence 333 2233568899999965 6666666888988887531 11111 22223467788998 8776665443
No 63
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.0023 Score=61.39 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=70.2
Q ss_pred eEEEecCCC-eEEEE-eCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 98 GLALHYATR-QLYIA-DAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 98 Gla~d~~~g-~LyVa-d~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
..++. ++| +|+.+ ... ..|+.+|.++++.+.+.. ..+ .....+++|++..|+++-..
T Consensus 206 ~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPDG~~la~~~~~------------- 266 (435)
T PRK05137 206 TPRFS-PNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPDGRKVVMSLSQ------------- 266 (435)
T ss_pred eeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCCCCEEEEEEec-------------
Confidence 46675 455 45443 322 349999998887665532 222 12356889953356555321
Q ss_pred ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181 174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG 230 (310)
Q Consensus 174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~ 230 (310)
..+..||.+|.++++.+.+...-......+|+|||+.|+++... ..+|+++++++
T Consensus 267 --~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 267 --GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred --CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 12356999998888777665544445678999999988776533 34799998765
No 64
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.13 E-value=3.6e-06 Score=48.17 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=25.1
Q ss_pred CCCCceeEEccCCCEEEEEecCCCeEEEE
Q 048181 198 LTGPAGVAISVDSSFLLVSEFTGNRTLKY 226 (310)
Q Consensus 198 l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~ 226 (310)
+..|.||+++++|+ |||+|+.++||++|
T Consensus 1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 45799999998885 99999999999986
No 65
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.13 E-value=2.1e-05 Score=58.05 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=42.1
Q ss_pred eeEEEecCCCeEEEEeCCC------------------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEc
Q 048181 97 FGLALHYATRQLYIADAYS------------------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTD 158 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~~------------------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd 158 (310)
++++++..+|.+|++|... +++++|+.+++.+++.. .+.+||||++++++..++|++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-----~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-----GLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-----EESSEEEEEE-TTSSEEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-----CCCccCeEEEcCCCCEEEEEe
Confidence 3678874349999998521 39999999998887764 467999999999644588888
Q ss_pred CCC
Q 048181 159 ASG 161 (310)
Q Consensus 159 ~~~ 161 (310)
+..
T Consensus 76 t~~ 78 (89)
T PF03088_consen 76 TGR 78 (89)
T ss_dssp GGG
T ss_pred ccC
Confidence 753
No 66
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.99 E-value=0.0044 Score=53.69 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=105.3
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEE
Q 048181 40 AFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLV 119 (310)
Q Consensus 40 a~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~ 119 (310)
++..++. +|+...++.|+.++...+...+.... . .....+ ..+ .++++||+.....++.
T Consensus 32 ~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~--------~--------~~~~~~--~~~--~~~~v~v~~~~~~l~~ 90 (238)
T PF13360_consen 32 AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDL--------P--------GPISGA--PVV--DGGRVYVGTSDGSLYA 90 (238)
T ss_dssp EEEETTE-EEEEETTSEEEEEETTTSEEEEEEEC--------S--------SCGGSG--EEE--ETTEEEEEETTSEEEE
T ss_pred EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeec--------c--------ccccce--eee--cccccccccceeeeEe
Confidence 4434455 55556899999999865554443211 0 011111 244 4789999876667999
Q ss_pred EeCCCCeEEEe-ec-cCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecC
Q 048181 120 VGPNGRLATQL-AT-GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRN 197 (310)
Q Consensus 120 id~~~~~~~~~-~~-~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~ 197 (310)
+|..+|+...- .. ..+...+..+-..+++ ++.+|+... +|.|+.+|+++|+..-...
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~- 149 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTS------------------SGKLVALDPKTGKLLWKYP- 149 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEET------------------CSEEEEEETTTTEEEEEEE-
T ss_pred cccCCcceeeeeccccccccccccccCceEe--cCEEEEEec------------------cCcEEEEecCCCcEEEEee-
Confidence 99887765432 11 1121223334455555 477888764 3678999988887632222
Q ss_pred CCCCc------------eeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181 198 LTGPA------------GVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 198 l~~pn------------GIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
+..|. +-.+..++ .+|++..... +..++... |...- .. ...+..+.... ++.||++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~-~~~~d~~t---g~~~w~~~-~~~~~~~~~~~--~~~l~~~~~~ 221 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGR-VVAVDLAT---GEKLWSKP-ISGIYSLPSVD--GGTLYVTSSD 221 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSS-EEEEETTT---TEEEEEEC-SS-ECECEECC--CTEEEEEETT
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCe-EEEEECCC---CCEEEEec-CCCccCCceee--CCEEEEEeCC
Confidence 12222 33333345 6888775554 56666543 33212 22 23345544555 6889999843
Q ss_pred CCCCCCCCceeeEEECC-CCcEE
Q 048181 265 TRQPAGTPVPIGQRISA-FGAVL 286 (310)
Q Consensus 265 ~~~~~~~~~~~v~~~~~-~G~~~ 286 (310)
. .++.+|. .|+++
T Consensus 222 ~---------~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 222 G---------RLYALDLKTGKVV 235 (238)
T ss_dssp T---------EEEEEETTTTEEE
T ss_pred C---------EEEEEECCCCCEE
Confidence 2 7999995 57764
No 67
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.99 E-value=0.0035 Score=54.42 Aligned_cols=218 Identities=12% Similarity=0.051 Sum_probs=126.7
Q ss_pred ecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181 21 IPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA 100 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla 100 (310)
+.++..++.+- .....+.|..+|+..|++..+|.+..++... .. |. ..-....--+-+.
T Consensus 73 p~Pv~t~e~h~--kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~-------------~q-----R~~~~~spVn~vv 131 (311)
T KOG0315|consen 73 PNPVATFEGHT--KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LS-------------CQ-----RNYQHNSPVNTVV 131 (311)
T ss_pred CCceeEEeccC--CceEEEEEeecCeEEEecCCCceEEEEeccC-cc-------------cc-----hhccCCCCcceEE
Confidence 33555555552 2456778888899888888888777776542 10 10 0001112224688
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181 101 LHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR 180 (310)
Q Consensus 101 ~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~ 180 (310)
+++..+.|+++|....|+..|+.........-.. ...+...++++++ |...++-.. .|+
T Consensus 132 lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe---~~~~i~sl~v~~d-gsml~a~nn-----------------kG~ 190 (311)
T KOG0315|consen 132 LHPNQTELISGDQSGNIRVWDLGENSCTHELIPE---DDTSIQSLTVMPD-GSMLAAANN-----------------KGN 190 (311)
T ss_pred ecCCcceEEeecCCCcEEEEEccCCccccccCCC---CCcceeeEEEcCC-CcEEEEecC-----------------Ccc
Confidence 8878899999998877999998764322111111 2245567899994 876654322 355
Q ss_pred EEEEcCCCCeE-EEee--cCC----CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCC
Q 048181 181 LLSYNPRSSQV-TVLL--RNL----TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPG 253 (310)
Q Consensus 181 l~~~d~~~g~~-~~~~--~~l----~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~ 253 (310)
.|.++.-++.. +.+. ..+ .+.--.-+|||+++ +++.+....+..+..++-..++..+.+-.+--.+.+|+.
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~- 268 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA- 268 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcE-EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-
Confidence 55555432211 1111 112 12345678999984 566677778877776642122222222234577899999
Q ss_pred CCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEec
Q 048181 254 LLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISF 291 (310)
Q Consensus 254 ~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~ 291 (310)
||.+.|+...-. .+.-.+ +.|+.++.+..
T Consensus 269 -dg~YlvTassd~--------~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 269 -DGEYLVTASSDH--------TARLWDLSAGKEVRQYQG 298 (311)
T ss_pred -CccEEEecCCCC--------ceeecccccCceeeecCC
Confidence 998888766542 344556 35777766654
No 68
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.0084 Score=57.47 Aligned_cols=113 Identities=13% Similarity=0.035 Sum_probs=70.8
Q ss_pred eeEEEecCCC-eEEEE-eC--CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 97 FGLALHYATR-QLYIA-DA--YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 97 ~Gla~d~~~g-~LyVa-d~--~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
...++. ++| +|.++ .. ...|+.++.++++.+.+.. ..+ .....+++|++..|+++....
T Consensus 202 ~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPDG~~La~~~~~~----------- 264 (429)
T PRK03629 202 MSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR----HNGAPAFSPDGSKLAFALSKT----------- 264 (429)
T ss_pred eeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC----CcCCeEECCCCCEEEEEEcCC-----------
Confidence 356786 455 44333 22 2348888988887665532 222 123578999633577663321
Q ss_pred eecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181 173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG 230 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~ 230 (310)
.+..||.+|.++++.+.+...-......+|+|||+.|+++... ..+||++++++
T Consensus 265 ----g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 265 ----GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred ----CCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 1235899998888777766544455788999999977655432 34788888865
No 69
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.97 E-value=0.004 Score=56.25 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=91.3
Q ss_pred CceeeEEEecCCCeEEEEeCCCc--EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181 94 RRTFGLALHYATRQLYIADAYSG--LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~~~g--i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~ 171 (310)
.+.+|+++++.++...+.-..-| .+++|..+++........++..|+. -.++++++..||.|....
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~~LytTEnd~---------- 72 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGRLLYTTENDY---------- 72 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEec--CEEEcCCCCEEEEecccc----------
Confidence 46678888743444433222223 8889999887665555555555532 466788544566665432
Q ss_pred eeecCCCceEEEEcCCCCeEEEe---ecCCCCCceeEEccCCCEEEEEecCC------C-----------eEEEEEecCC
Q 048181 172 NITNDSTGRLLSYNPRSSQVTVL---LRNLTGPAGVAISVDSSFLLVSEFTG------N-----------RTLKYWLRGP 231 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~~~~~---~~~l~~pnGIa~~~dg~~Lyv~d~~~------~-----------~I~~~~~~~~ 231 (310)
....|.|-.||.. ...+.+ ...--.|--|.+.|||++|.|++-.= + .+..++..
T Consensus 73 ---~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-- 146 (305)
T PF07433_consen 73 ---ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-- 146 (305)
T ss_pred ---CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC--
Confidence 2356889999986 223332 23344789999999999999975321 1 12222111
Q ss_pred CCCce-eeecCC-----CCCceeeeCCCCCCcEEEEEecCCC
Q 048181 232 RANSF-DIINFQ-----AKPHNIKRNPGLLQTFWEAAIITRQ 267 (310)
Q Consensus 232 ~~g~~-~~~~l~-----g~Pdgl~~d~~~dG~l~va~~~~~~ 267 (310)
.|.+ +...+| -.-..|+++. +|.+|+++.....
T Consensus 147 -sG~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~ 185 (305)
T PF07433_consen 147 -SGALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGD 185 (305)
T ss_pred -CCceeeeeecCccccccceeeEEecC--CCcEEEEEecCCC
Confidence 1221 111232 1357799999 9999999988753
No 70
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.96 E-value=0.00015 Score=70.94 Aligned_cols=120 Identities=18% Similarity=0.291 Sum_probs=76.2
Q ss_pred CCCceeeEEEecCCCeEEEEeC--C------------------CcEEEEeCCCC-------eEEEeeccC----------
Q 048181 92 ICRRTFGLALHYATRQLYIADA--Y------------------SGLLVVGPNGR-------LATQLATGA---------- 134 (310)
Q Consensus 92 ~~~~P~Gla~d~~~g~LyVad~--~------------------~gi~~id~~~~-------~~~~~~~~~---------- 134 (310)
.+.+|-|+.+++.+|++|++.. . .+|++++++++ +.+.+....
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 4678899999988999999742 1 13999988765 333332211
Q ss_pred ---CCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce-----------EEEEcCCCCeEEEeecCC--
Q 048181 135 ---EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR-----------LLSYNPRSSQVTVLLRNL-- 198 (310)
Q Consensus 135 ---~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~-----------l~~~d~~~g~~~~~~~~l-- 198 (310)
....|..|..|++++ .|+|||.......... +....++|. ++..++.+++++.+....
T Consensus 428 ~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~~~~~~-----l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~g 501 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDP-DGNLWIQEDGGGSNNN-----LPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNG 501 (524)
T ss_pred CcccCCCcCCCCceEECC-CCCEEEEeCCCCCCcc-----cccccccCceeeeeecccceeeeccccccceeeeccCCCC
Confidence 134688999999999 5999986543221100 001112232 444566667776665432
Q ss_pred CCCceeEEccCCCEEEEEe
Q 048181 199 TGPAGVAISVDSSFLLVSE 217 (310)
Q Consensus 199 ~~pnGIa~~~dg~~Lyv~d 217 (310)
.-..|++|+||+++|||.-
T Consensus 502 aE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 502 AEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred cccccceECCCCCEEEEEE
Confidence 2357999999999999864
No 71
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.95 E-value=0.0024 Score=57.60 Aligned_cols=201 Identities=17% Similarity=0.122 Sum_probs=113.9
Q ss_pred EEccCCCEEEEEe-----CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEeC
Q 048181 40 AFEPVGGAFYTGV-----ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIADA 113 (310)
Q Consensus 40 a~d~~G~l~~~d~-----~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad~ 113 (310)
+|++||+++|+.- ..|.|-.++...++..+. .+....-.|+-|.+. ++| .|.|++.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~-----------------E~~s~GIGPHel~l~-pDG~tLvVANG 118 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG-----------------EFPSHGIGPHELLLM-PDGETLVVANG 118 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe-----------------EecCCCcChhhEEEc-CCCCEEEEEcC
Confidence 5778898888853 467788888775554432 122334468888886 566 8888875
Q ss_pred C------C------------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 114 Y------S------------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 114 ~------~------------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
+ . .+..+|..+|++..-....+.....+...+++++ +|.+++.-....-. .+
T Consensus 119 GI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~-~~-------- 188 (305)
T PF07433_consen 119 GIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDP-GD-------- 188 (305)
T ss_pred CCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCC-Cc--------
Confidence 3 1 2556666666542211121222345678899999 59999986432100 00
Q ss_pred CCCceEEEEcCCCCeEEEee------cCC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCce-
Q 048181 176 DSTGRLLSYNPRSSQVTVLL------RNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHN- 247 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~~~------~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdg- 247 (310)
..--|..++.. ...+.+. ..+ .+--.||++++|+.+.++....+++..++... |... .....||.
T Consensus 189 -~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t---g~~~--~~~~l~D~c 261 (305)
T PF07433_consen 189 -APPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT---GRLL--GSVPLPDAC 261 (305)
T ss_pred -cCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC---CCEe--eccccCcee
Confidence 00112333322 1122211 112 35678999999998889999999999886542 3321 11124554
Q ss_pred -eeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEE
Q 048181 248 -IKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLD 287 (310)
Q Consensus 248 -l~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~ 287 (310)
++... +| |+...+. +.++++++.+....
T Consensus 262 Gva~~~--~~--f~~ssG~--------G~~~~~~~~~~~~~ 290 (305)
T PF07433_consen 262 GVAPTD--DG--FLVSSGQ--------GQLIRLSPDGPQPR 290 (305)
T ss_pred eeeecC--Cc--eEEeCCC--------ccEEEccCcccccc
Confidence 44454 55 3333332 36777777655443
No 72
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00082 Score=56.90 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=77.2
Q ss_pred CceeeEEEecCCCeEEEEeCCCcEEEEeCCCCe-EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRL-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
+.=.||+-| +.+|+-+|...-+..-||++=. ...+.-..+|.|....|-+..- +|.+|..-..
T Consensus 131 GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~------------ 194 (262)
T COG3823 131 GEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQ------------ 194 (262)
T ss_pred CcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeee------------
Confidence 344688875 6678888877668888887621 2222223567788888888876 4888865322
Q ss_pred eecCCCceEEEEcCCCCeEEEeec-------------CCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181 173 ITNDSTGRLLSYNPRSSQVTVLLR-------------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYW 227 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g~~~~~~~-------------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~ 227 (310)
+-++.|++|++|++..+++ +...+||||.+|+++.+|++-..=..++-+.
T Consensus 195 -----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 195 -----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVK 257 (262)
T ss_pred -----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEE
Confidence 2479999999998876653 2347899999999988999754333444443
No 73
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.90 E-value=0.0086 Score=55.90 Aligned_cols=205 Identities=13% Similarity=0.117 Sum_probs=101.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe----cCCCe--EEE-EeCC--
Q 048181 44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH----YATRQ--LYI-ADAY-- 114 (310)
Q Consensus 44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d----~~~g~--LyV-ad~~-- 114 (310)
...+++....++.++.++.+|+..... ..++++.+.+- ..... |.+ ++..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~---------------------~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g 125 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSL---------------------PVGRPNNVDVRYGFPLNGKTVDLAVASDRSDG 125 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE----------------------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCC
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEee---------------------cCCCcceeeeecceecCCceEEEEEEecCcCC
Confidence 456777777788899999988764332 12355533320 01222 333 3432
Q ss_pred -C--cEEEEeCCCCeEEEeeccCC--CccccCccceEE--eCCCCeEEEEcCCCccCccceeEeeeecCCCceE--EEEc
Q 048181 115 -S--GLLVVGPNGRLATQLATGAE--GQAFHFLDGLDV--DQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL--LSYN 185 (310)
Q Consensus 115 -~--gi~~id~~~~~~~~~~~~~~--g~~~~~pndvav--d~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l--~~~d 185 (310)
+ .+++||++++.++.+..... ...+.-+-|+++ ++.+|.+|+--.. .+|.+ |++.
T Consensus 126 ~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~ 189 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELT 189 (381)
T ss_dssp T-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEE
T ss_pred CCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEE
Confidence 2 28889988777665532110 012333567776 3435766643211 12332 2221
Q ss_pred -CCCCeEE--Ee--ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee------ecCCCCCceeee--CC
Q 048181 186 -PRSSQVT--VL--LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI------INFQAKPHNIKR--NP 252 (310)
Q Consensus 186 -~~~g~~~--~~--~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~------~~l~g~Pdgl~~--d~ 252 (310)
...+.++ .+ ..-...+.|++.|....+||++|-. .-||+|+.+.......++ ..+..-.-||++ ..
T Consensus 190 ~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~ 268 (381)
T PF02333_consen 190 DDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGS 268 (381)
T ss_dssp E-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-C
T ss_pred eCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecC
Confidence 2223221 11 1233578999999998899999964 689999876432111122 123334678887 23
Q ss_pred CCCCcEEEEEecCCCCCCCCceeeEEECCCC--cEEEEEecCCC
Q 048181 253 GLLQTFWEAAIITRQPAGTPVPIGQRISAFG--AVLDTISFEAQ 294 (310)
Q Consensus 253 ~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G--~~~~~~~~p~~ 294 (310)
+-+|.|+++..+.. .-..|+.+| +.+..+.+-++
T Consensus 269 ~g~gYLivSsQG~~--------sf~Vy~r~~~~~~~g~f~i~~~ 304 (381)
T PF02333_consen 269 DGKGYLIVSSQGDN--------SFAVYDREGPNAYVGSFRIGDG 304 (381)
T ss_dssp CC-EEEEEEEGGGT--------EEEEEESSTT--EEEEEEEE--
T ss_pred CCCeEEEEEcCCCC--------eEEEEecCCCCcccceEEeccC
Confidence 00456777777763 455566443 56677766554
No 74
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.89 E-value=0.00069 Score=60.96 Aligned_cols=141 Identities=16% Similarity=0.208 Sum_probs=89.8
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC-
Q 048181 37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY- 114 (310)
Q Consensus 37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~- 114 (310)
..|+| .++.++|+...=+++-.+++.-..+. +. .+... +.+.+..+ +-+|||+. ...--||+...
T Consensus 106 Hdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~Wk--PpFIs--------~la~eDRC-HLNGlA~~-~g~p~yVTa~~~ 172 (335)
T TIGR03032 106 HDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWK--PPFIS--------KLAPEDRC-HLNGMALD-DGEPRYVTALSQ 172 (335)
T ss_pred hheee-cCCcEEEEECcceeEEEECCCCccccccC--Ccccc--------ccCccCce-eecceeee-CCeEEEEEEeec
Confidence 34777 46677888777777878877644331 11 00000 01111222 45799995 34445775321
Q ss_pred ------------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181 115 ------------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL 182 (310)
Q Consensus 115 ------------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~ 182 (310)
.|=..+|..++++ +++ .+.+|..-... +|+|||.|+.. |.+.
T Consensus 173 sD~~~gWR~~~~~gG~vidv~s~ev--l~~-----GLsmPhSPRWh--dgrLwvldsgt-----------------Gev~ 226 (335)
T TIGR03032 173 SDVADGWREGRRDGGCVIDIPSGEV--VAS-----GLSMPHSPRWY--QGKLWLLNSGR-----------------GELG 226 (335)
T ss_pred cCCcccccccccCCeEEEEeCCCCE--EEc-----CccCCcCCcEe--CCeEEEEECCC-----------------CEEE
Confidence 1222355555532 222 35677777777 59999999864 8999
Q ss_pred EEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec
Q 048181 183 SYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF 218 (310)
Q Consensus 183 ~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~ 218 (310)
++|+++|+.+++..--.+|.||+|. |++++|+-+
T Consensus 227 ~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 227 YVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred EEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence 9999889998888766799999999 888888665
No 75
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.021 Score=54.70 Aligned_cols=203 Identities=10% Similarity=0.016 Sum_probs=105.5
Q ss_pred ceEEEccCCC---EEEEEeCC--CeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEE
Q 048181 37 ESIAFEPVGG---AFYTGVAD--GRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLY 109 (310)
Q Consensus 37 egia~d~~G~---l~~~d~~~--g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~Ly 109 (310)
.+++|.|||+ ++|+...+ .+|+..+.+++. ..+. ...+.....++. ++| +|.
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--------------------~~~g~~~~p~wS-PDG~~La 246 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--------------------ALQGNQLMPTFS-PRKKLLA 246 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--------------------cCCCCccceEEC-CCCCEEE
Confidence 3578999985 44566543 568888877553 2221 011122235675 455 554
Q ss_pred EEeCC---CcEEE--EeCCC---CeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCce
Q 048181 110 IADAY---SGLLV--VGPNG---RLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGR 180 (310)
Q Consensus 110 Vad~~---~gi~~--id~~~---~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~ 180 (310)
++... ..++. ++.++ ++.+.+.... .......+++|+ |+ |+++.... ..-+
T Consensus 247 f~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~----~~~~~~p~wSPD-G~~Laf~s~~~---------------g~~~ 306 (428)
T PRK01029 247 FISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA----FGTQGNPSFSPD-GTRLVFVSNKD---------------GRPR 306 (428)
T ss_pred EEECCCCCcceeEEEeecccCCCCcceEeecCC----CCCcCCeEECCC-CCEEEEEECCC---------------CCce
Confidence 44321 13444 34433 2333333211 111234688995 64 55543211 1235
Q ss_pred EEEEcCC--CCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCC
Q 048181 181 LLSYNPR--SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLL 255 (310)
Q Consensus 181 l~~~d~~--~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~d 255 (310)
||+++.+ +++.+.+..........+|+|||++|+++... ..+|+.+++++. ..+. ...+.......+.+ |
T Consensus 307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g---~~~~Lt~~~~~~~~p~wSp--D 381 (428)
T PRK01029 307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG---RDYQLTTSPENKESPSWAI--D 381 (428)
T ss_pred EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC---CeEEccCCCCCccceEECC--C
Confidence 7777543 23344443322333568899999988776543 357999988653 3322 21123345678888 8
Q ss_pred Cc-EEEEEecCCCCCCCCceeeEEECCCCcEEEEEec
Q 048181 256 QT-FWEAAIITRQPAGTPVPIGQRISAFGAVLDTISF 291 (310)
Q Consensus 256 G~-l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~ 291 (310)
|+ |+.+..... ...+..+|.+|.....+..
T Consensus 382 G~~L~f~~~~~g------~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 382 SLHLVYSAGNSN------ESELYLISLITKKTRKIVI 412 (428)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCEEEeec
Confidence 86 443332221 1367788877654444443
No 76
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=0.014 Score=56.30 Aligned_cols=112 Identities=8% Similarity=0.024 Sum_probs=70.3
Q ss_pred eEEEecCCC-eEEEE-eCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 98 GLALHYATR-QLYIA-DAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 98 Gla~d~~~g-~LyVa-d~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
...+. ++| +|+++ +.. ..|+.+|.++++.+.+.. ..+ . ....+++|++..|+++....
T Consensus 222 ~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g--~--~~~~~wSPDG~~La~~~~~~------------ 283 (448)
T PRK04792 222 SPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG--I--NGAPRFSPDGKKLALVLSKD------------ 283 (448)
T ss_pred CceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC--C--cCCeeECCCCCEEEEEEeCC------------
Confidence 45675 455 45443 322 249999998877655432 222 1 13578899633476653211
Q ss_pred ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181 174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG 230 (310)
Q Consensus 174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~ 230 (310)
.+..||.+|.++++.+.+..........+|+|||++|+++... ...|+++++++
T Consensus 284 ---g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 284 ---GQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred ---CCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 1246999998888777665544455678999999988776543 35788888764
No 77
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.82 E-value=0.01 Score=56.48 Aligned_cols=187 Identities=19% Similarity=0.197 Sum_probs=116.6
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD 112 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad 112 (310)
..-..+++.++|..+|+...+|.|..++...+.. .+. | .....+-.+|+.+ ..+.||.+.
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~------------g------~~h~nqI~~~~~~-~~~~~~t~g 381 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA------------G------KGHTNQIKGMAAS-ESGELFTIG 381 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc------------c------ccccceEEEEeec-CCCcEEEEe
Confidence 3455788889999899999999999998764431 111 0 1223455688885 568899888
Q ss_pred CCCcEEEEeCCCCeEEE-eeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181 113 AYSGLLVVGPNGRLATQ-LATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV 191 (310)
Q Consensus 113 ~~~gi~~id~~~~~~~~-~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~ 191 (310)
....+.+++..++..+. ..-.. -..|-++++.++++.+.++.... |..+...++ +
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~l----g~QP~~lav~~d~~~avv~~~~~-------------------iv~l~~~~~-~ 437 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKL----GSQPKGLAVLSDGGTAVVACISD-------------------IVLLQDQTK-V 437 (603)
T ss_pred cCCeEEEEecccCcccccceeec----CCCceeEEEcCCCCEEEEEecCc-------------------EEEEecCCc-c
Confidence 77778888775432211 00011 23467999998534555554321 222221111 1
Q ss_pred EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCC
Q 048181 192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQ 267 (310)
Q Consensus 192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~ 267 (310)
.. ..--..|.++|++||++.+-| --..+.|..|.++|...-+..+ ....+.+.-++..+ ||.+++++...|.
T Consensus 438 ~~-~~~~y~~s~vAv~~~~~~vaV-GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp--d~~yla~~Da~rk 510 (603)
T KOG0318|consen 438 SS-IPIGYESSAVAVSPDGSEVAV-GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP--DGAYLAAGDASRK 510 (603)
T ss_pred ee-eccccccceEEEcCCCCEEEE-ecccceEEEEEecCCcccceeeeecccCCceEEEECC--CCcEEEEeccCCc
Confidence 11 122246899999999985443 3455679999998743211112 34456688899999 9999888887763
No 78
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.014 Score=56.03 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=70.0
Q ss_pred eEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181 98 GLALHYATRQLYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT 174 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~ 174 (310)
..++.++...|+.+... ..|+.++.++++.+.+.. ..+ . ....+++|++..|+++-..
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g--~--~~~~~~SpDG~~l~~~~s~-------------- 268 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG--I--NGAPSFSPDGRRLALTLSR-------------- 268 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC--C--ccCceECCCCCEEEEEEeC--------------
Confidence 45665333345554322 249999998877655532 222 1 1257899963357665322
Q ss_pred cCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181 175 NDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG 230 (310)
Q Consensus 175 ~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~ 230 (310)
..+..||.+|..+++.+.+..........+|+|||+.|+++... ...|+.+++++
T Consensus 269 -~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 269 -DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred -CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 12346999999888776665443344578999999988776543 34688888764
No 79
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.77 E-value=0.012 Score=55.59 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=59.9
Q ss_pred CceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCC-CCCceeeeCCCC
Q 048181 178 TGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQ-AKPHNIKRNPGL 254 (310)
Q Consensus 178 ~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~-g~Pdgl~~d~~~ 254 (310)
+|.++.+|+.+|+.. +...+..+..++.. ++.||+.. ..++|+.++... |+..- ..+. ..-....+ .
T Consensus 265 ~g~l~ald~~tG~~~-W~~~~~~~~~~~~~--~~~vy~~~-~~g~l~ald~~t---G~~~W~~~~~~~~~~~sp~v-~-- 334 (394)
T PRK11138 265 NGNLVALDLRSGQIV-WKREYGSVNDFAVD--GGRIYLVD-QNDRVYALDTRG---GVELWSQSDLLHRLLTAPVL-Y-- 334 (394)
T ss_pred CCeEEEEECCCCCEE-EeecCCCccCcEEE--CCEEEEEc-CCCeEEEEECCC---CcEEEcccccCCCcccCCEE-E--
Confidence 478999999888652 22233344455553 44688876 467898888753 32211 1111 11122334 3
Q ss_pred CCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCC
Q 048181 255 LQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEA 293 (310)
Q Consensus 255 dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~ 293 (310)
+|.||++...+ .+..+|+ +|+++....++.
T Consensus 335 ~g~l~v~~~~G---------~l~~ld~~tG~~~~~~~~~~ 365 (394)
T PRK11138 335 NGYLVVGDSEG---------YLHWINREDGRFVAQQKVDS 365 (394)
T ss_pred CCEEEEEeCCC---------EEEEEECCCCCEEEEEEcCC
Confidence 58999987764 6888896 799999988863
No 80
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.76 E-value=0.021 Score=51.32 Aligned_cols=222 Identities=12% Similarity=0.072 Sum_probs=121.0
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCeEEEEECC-----Cce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181 32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAP-----DGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA 104 (310)
Q Consensus 32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~-----g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~ 104 (310)
.|..|.||++.|.+.+|++|...+...-++.+ +.. .++....+ .+ ......|.|+++. .
T Consensus 21 ~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~-------~~------~~~~~~PTGiVfN-~ 86 (336)
T TIGR03118 21 GLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP-------PP------LAAEGTPTGQVFN-G 86 (336)
T ss_pred cccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC-------CC------CCCCCCccEEEEe-C
Confidence 67899999999999877788778877777765 211 11111100 00 1234578999996 3
Q ss_pred CCeEEEEeCC-C--cEEEEeCCCCeEEEeeccCC-------------CccccCccceEEeCC--CCeEEEEcCCCccCcc
Q 048181 105 TRQLYIADAY-S--GLLVVGPNGRLATQLATGAE-------------GQAFHFLDGLDVDQG--TGVVYFTDASGVYDFR 166 (310)
Q Consensus 105 ~g~LyVad~~-~--gi~~id~~~~~~~~~~~~~~-------------g~~~~~pndvavd~~--~G~lyvtd~~~~~~~~ 166 (310)
....-|+... . ..+.+..++|.+.-+....+ +..-..=-++|+... ...||.+|-.
T Consensus 87 ~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~------ 160 (336)
T TIGR03118 87 SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR------ 160 (336)
T ss_pred CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC------
Confidence 3333233211 1 13344444444433321110 000001124555431 2466666643
Q ss_pred ceeEeeeecCCCceEEEEcCCCCeEEE---e----ecCCCCCceeEEccCCCEEEEEecC-------------CCeEEEE
Q 048181 167 TIVKLNITNDSTGRLLSYNPRSSQVTV---L----LRNLTGPAGVAISVDSSFLLVSEFT-------------GNRTLKY 226 (310)
Q Consensus 167 ~~~~~~~~~~~~G~l~~~d~~~g~~~~---~----~~~l~~pnGIa~~~dg~~Lyv~d~~-------------~~~I~~~ 226 (310)
+|+|-.||..-.++.. . +..-..|-+|.-- |..|||+-.. .+.|-+|
T Consensus 161 -----------~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvF 227 (336)
T TIGR03118 161 -----------QGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVF 227 (336)
T ss_pred -----------CCceEEecCccccccCCCCccCCCCCCCCCCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEE
Confidence 3667767643222211 0 1112357788665 3459997532 2457777
Q ss_pred EecCCCCCceee-ecCCCCCceeeeCCC----CCCcEEEEEecCCCCCCCCceeeEEECCC-CcEEEEEecCCCc
Q 048181 227 WLRGPRANSFDI-INFQAKPHNIKRNPG----LLQTFWEAAIITRQPAGTPVPIGQRISAF-GAVLDTISFEAQY 295 (310)
Q Consensus 227 ~~~~~~~g~~~~-~~l~g~Pdgl~~d~~----~dG~l~va~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~p~~~ 295 (310)
+.+|.-..+... ..| ..|.||++.++ +.|.|.|+-++- +.+-.||++ |+.+..+..+.+.
T Consensus 228 d~~G~l~~r~as~g~L-NaPWG~a~APa~FG~~sg~lLVGNFGD--------G~InaFD~~sG~~~g~L~~~~G~ 293 (336)
T TIGR03118 228 TLNGQLLRRVASSGRL-NAPWGLAIAPESFGSLSGALLVGNFGD--------GTINAYDPQSGAQLGQLLDPDNH 293 (336)
T ss_pred cCCCcEEEEeccCCcc-cCCceeeeChhhhCCCCCCeEEeecCC--------ceeEEecCCCCceeeeecCCCCC
Confidence 776532111111 223 46999999431 257899998886 489999985 9999999999874
No 81
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.74 E-value=0.014 Score=52.42 Aligned_cols=192 Identities=13% Similarity=0.095 Sum_probs=108.9
Q ss_pred CCCCceeeEEEecCCCeEEEEeCCCc-EEEEeCC--C--CeEEEeeccCC---C-ccccCccceEEeCCCCeEEEEcCCC
Q 048181 91 PICRRTFGLALHYATRQLYIADAYSG-LLVVGPN--G--RLATQLATGAE---G-QAFHFLDGLDVDQGTGVVYFTDASG 161 (310)
Q Consensus 91 ~~~~~P~Gla~d~~~g~LyVad~~~g-i~~id~~--~--~~~~~~~~~~~---g-~~~~~pndvavd~~~G~lyvtd~~~ 161 (310)
+.+.+|+||++. +.+-+||+|...+ ...+|.. + +....+.-.++ + .....|.++++.. ...+-|+....
T Consensus 20 p~L~N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~ 97 (336)
T TIGR03118 20 PGLRNAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGI 97 (336)
T ss_pred ccccccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCc
Confidence 566789999996 6899999998876 3344433 1 11111111111 1 1234588888886 34444554321
Q ss_pred ccCccceeEeeeecCCCceEEEEcCCCCeE------EEeecC--CCCCceeEEccC--CCEEEEEecCCCeEEEEEecCC
Q 048181 162 VYDFRTIVKLNITNDSTGRLLSYNPRSSQV------TVLLRN--LTGPAGVAISVD--SSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 162 ~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~------~~~~~~--l~~pnGIa~~~d--g~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
. ....+ +....+|.|.-+.+.-+.. .++... -..=.|+|+... +++||.++..+++|-+|+-+-.
T Consensus 98 ~-~~a~F----if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 98 T-GPSRF----LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred c-cceeE----EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 1 11111 1223467777776642222 122111 111258887743 6799999999999999964321
Q ss_pred CCCc-eee--ecCC--CCCceeeeCCCCCCcEEEEEecCCCCCC-----CCceeeEEECCCCcEEEEEecC
Q 048181 232 RANS-FDI--INFQ--AKPHNIKRNPGLLQTFWEAAIITRQPAG-----TPVPIGQRISAFGAVLDTISFE 292 (310)
Q Consensus 232 ~~g~-~~~--~~l~--g~Pdgl~~d~~~dG~l~va~~~~~~~~~-----~~~~~v~~~~~~G~~~~~~~~p 292 (310)
+... ... ..+| -.|-+|.-- .|+|||+-.-.....+ .-++.|-+||.+|++++++...
T Consensus 173 ~~~~~g~F~DP~iPagyAPFnIqni---g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~ 240 (336)
T TIGR03118 173 PPPLPGSFIDPALPAGYAPFNVQNL---GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS 240 (336)
T ss_pred cccCCCCccCCCCCCCCCCcceEEE---CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccC
Confidence 1100 001 2344 248888765 4899999655432221 2346788999999999988554
No 82
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.72 E-value=0.017 Score=57.22 Aligned_cols=215 Identities=16% Similarity=0.146 Sum_probs=132.9
Q ss_pred CCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCC--ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC
Q 048181 29 FPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD--GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR 106 (310)
Q Consensus 29 ~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g 106 (310)
|...-.+..++.|...|+.+++...+|+|+.+|... .+++|.. +..-+-.-+++| +.|
T Consensus 388 FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-------------------P~p~QfscvavD-~sG 447 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-------------------PEPIQFSCVAVD-PSG 447 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-------------------CCceeeeEEEEc-CCC
Confidence 333335677888999999999999999999999873 2344421 122233468898 678
Q ss_pred eEEEEeCCC--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181 107 QLYIADAYS--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY 184 (310)
Q Consensus 107 ~LyVad~~~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~ 184 (310)
.|.+|-... .|+..+.++|+..-+...=+| | ..++.+++. |.+.++-+... +=++|-+
T Consensus 448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-P---Vs~l~f~~~-~~~LaS~SWDk---------------TVRiW~i 507 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-P---VSGLSFSPD-GSLLASGSWDK---------------TVRIWDI 507 (893)
T ss_pred CEEEeeccceEEEEEEEeecCeeeehhcCCCC-c---ceeeEEccc-cCeEEeccccc---------------eEEEEEe
Confidence 887765443 388999999876544433222 2 357899994 88888765421 1133433
Q ss_pred cCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC-CCCc-----------eeeecC-------CCCC
Q 048181 185 NPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP-RANS-----------FDIINF-------QAKP 245 (310)
Q Consensus 185 d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~-~~g~-----------~~~~~l-------~g~P 245 (310)
-...++++.+. --.-.-+++|.|||+.|-|+ +..+.|.-|+.... ..+. .+.+.+ ...=
T Consensus 508 f~s~~~vEtl~-i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F 585 (893)
T KOG0291|consen 508 FSSSGTVETLE-IRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF 585 (893)
T ss_pred eccCceeeeEe-eccceeEEEEcCCCCeEEEE-EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce
Confidence 33345555543 12345789999999987665 56677776665421 1111 111000 0112
Q ss_pred ceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCCCc
Q 048181 246 HNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEAQY 295 (310)
Q Consensus 246 dgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~~~ 295 (310)
.-|+... ||+..+|....+ .+..|+ ++|-++.++++-...
T Consensus 586 tti~ySa--DG~~IlAgG~sn--------~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 586 TTICYSA--DGKCILAGGESN--------SICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred EEEEEcC--CCCEEEecCCcc--------cEEEEECchhheeeeEEecccc
Confidence 4588888 998888876664 455566 667777777776543
No 83
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.65 E-value=0.0002 Score=44.75 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=34.1
Q ss_pred eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181 194 LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 194 ~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
+..++..||||++++.++.||.+|+..+.|.+++++|.
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 44578899999999999999999999999999999864
No 84
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.64 E-value=0.044 Score=52.47 Aligned_cols=113 Identities=11% Similarity=-0.016 Sum_probs=67.8
Q ss_pred eEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181 98 GLALHYATRQLYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT 174 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~ 174 (310)
..++.++..+|+++... ..|+.+|..+++.+.+.. ..+ .....+++|++..|+++-..
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPDG~~la~~~~~-------------- 260 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPDGRTLAVALSR-------------- 260 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCCCCEEEEEEcc--------------
Confidence 45776333355544322 239999998887665532 222 12357899963357665321
Q ss_pred cCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec--CCCeEEEEEecC
Q 048181 175 NDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF--TGNRTLKYWLRG 230 (310)
Q Consensus 175 ~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~--~~~~I~~~~~~~ 230 (310)
...-.||.+|.+++..+.+...-..-...+|+|||++|+++.. ....||+++.++
T Consensus 261 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 261 -DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred -CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 1224689998876666655443333456789999998876543 234688877654
No 85
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.64 E-value=0.045 Score=51.75 Aligned_cols=113 Identities=10% Similarity=-0.017 Sum_probs=66.9
Q ss_pred eEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181 98 GLALHYATRQLYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT 174 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~ 174 (310)
..++.+....|+++... ..|+.++.++++...+.. ..+ ....++++|++..|+++....
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spDg~~l~~~~~~~------------- 255 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG----MNGAPAFSPDGSKLAVSLSKD------------- 255 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCCCCEEEEEECCC-------------
Confidence 34565333345444332 248889988876554432 222 123478888533577764321
Q ss_pred cCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec--CCCeEEEEEecC
Q 048181 175 NDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF--TGNRTLKYWLRG 230 (310)
Q Consensus 175 ~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~--~~~~I~~~~~~~ 230 (310)
.+..||.+|..+++.+.+..........+|++||++|+++.. ....|+.+++++
T Consensus 256 --~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 256 --GNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred --CCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 234689999877766655443323346789999998876543 234789888764
No 86
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.64 E-value=0.053 Score=51.78 Aligned_cols=114 Identities=10% Similarity=0.030 Sum_probs=70.0
Q ss_pred eeEEEecCCCeEEE-EeCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 97 FGLALHYATRQLYI-ADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 97 ~Gla~d~~~g~LyV-ad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
...++.++..+|++ +... ..|+.++.++++.+.+.. ..+ .....+++|++..|+++-...
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG~~la~~~~~~------------ 264 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDGSKLAFVLSKD------------ 264 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCCCEEEEEEccC------------
Confidence 35577633345544 4322 249999998887665532 222 112578888533566653221
Q ss_pred ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181 174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG 230 (310)
Q Consensus 174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~ 230 (310)
.+..||.+|.++++.+.+...-.......|+|||+.|+++... ...|+++++++
T Consensus 265 ---g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 265 ---GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred ---CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 1246999998888776655443344567899999988776433 34788888764
No 87
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.63 E-value=0.00061 Score=65.46 Aligned_cols=121 Identities=16% Similarity=0.172 Sum_probs=72.6
Q ss_pred CCCceeeEEEecCCCeEEEEeCCC-----------------cEEEEeCCCC-------eEEEeeccCCC-----------
Q 048181 92 ICRRTFGLALHYATRQLYIADAYS-----------------GLLVVGPNGR-------LATQLATGAEG----------- 136 (310)
Q Consensus 92 ~~~~P~Gla~d~~~g~LyVad~~~-----------------gi~~id~~~~-------~~~~~~~~~~g----------- 136 (310)
...+|-++++.+..|++|++...+ +|+++-+.++ +...+....+.
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence 456889999987788999975321 3888877664 33333321111
Q ss_pred --ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCC--CCCceeEEccCCCE
Q 048181 137 --QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL--TGPAGVAISVDSSF 212 (310)
Q Consensus 137 --~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l--~~pnGIa~~~dg~~ 212 (310)
.-|+.|+++++|+. |+||+......-...++. ..-+.+..=++++++++.....- .--.|++|+||+++
T Consensus 495 ~~~~f~~PDnl~fD~~-GrLWi~TDg~~s~~~~~~------~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~T 567 (616)
T COG3211 495 NANWFNSPDNLAFDPW-GRLWIQTDGSGSTLRNRF------RGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKT 567 (616)
T ss_pred ccccccCCCceEECCC-CCEEEEecCCCCccCccc------ccccccccCCCccceeeeeccCCCcceeecceeCCCCce
Confidence 12777999999995 999985433211111100 01112333355566665544322 23469999999999
Q ss_pred EEEEecC
Q 048181 213 LLVSEFT 219 (310)
Q Consensus 213 Lyv~d~~ 219 (310)
|||.-..
T Consensus 568 lFV~vQH 574 (616)
T COG3211 568 LFVNVQH 574 (616)
T ss_pred EEEEecC
Confidence 9997553
No 88
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.62 E-value=0.027 Score=52.75 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=59.8
Q ss_pred CceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCC-CCceeeeCCCC
Q 048181 178 TGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQA-KPHNIKRNPGL 254 (310)
Q Consensus 178 ~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g-~Pdgl~~d~~~ 254 (310)
+|.++.+|+++|+..-.. ........+++ ++++|+.. ..++|+.++.+. |+..- ..+.+ .-....+.
T Consensus 250 ~g~l~a~d~~tG~~~W~~-~~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~t---G~~~W~~~~~~~~~~ssp~i~--- 319 (377)
T TIGR03300 250 QGRVAALDLRSGRVLWKR-DASSYQGPAVD--DNRLYVTD-ADGVVVALDRRS---GSELWKNDELKYRQLTAPAVV--- 319 (377)
T ss_pred CCEEEEEECCCCcEEEee-ccCCccCceEe--CCEEEEEC-CCCeEEEEECCC---CcEEEccccccCCccccCEEE---
Confidence 478999999888653222 23333444443 45688875 578899998753 32211 12211 11122343
Q ss_pred CCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCCC
Q 048181 255 LQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEAQ 294 (310)
Q Consensus 255 dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~~ 294 (310)
++.||++...+ .+..+|+ +|+++..+..+.+
T Consensus 320 g~~l~~~~~~G---------~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 320 GGYLVVGDFEG---------YLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred CCEEEEEeCCC---------EEEEEECCCCCEEEEEEcCCC
Confidence 46899987654 6888997 5999999988753
No 89
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.61 E-value=0.00011 Score=41.91 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=25.5
Q ss_pred CCCcceEEEccCCCEEEEEeCCCeEEEE
Q 048181 33 AFGGESIAFEPVGGAFYTGVADGRILKY 60 (310)
Q Consensus 33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~ 60 (310)
|..|.|++++++|++|++|..+++|.++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4689999999999999999999999875
No 90
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.0035 Score=58.80 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=47.2
Q ss_pred EeCCCC-CCCcceEEEccCCCEEEEEe-------------CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCC
Q 048181 27 ILFPPK-AFGGESIAFEPVGGAFYTGV-------------ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPI 92 (310)
Q Consensus 27 ~~~~~~-~~~Pegia~d~~G~l~~~d~-------------~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 92 (310)
-.+|+. ...-..|+|+|||.||++-= ..|+|+|++.++.+.. . ..+...+-+...
T Consensus 169 ~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~-d----------~p~~~~~i~s~G 237 (399)
T COG2133 169 RGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPA-D----------NPFPNSEIWSYG 237 (399)
T ss_pred ecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCccccc-C----------CCCCCcceEEec
Confidence 345532 45667899999997555421 2356777776654321 0 011111222234
Q ss_pred CCceeeEEEecCCCeEEEEeCCC
Q 048181 93 CRRTFGLALHYATRQLYIADAYS 115 (310)
Q Consensus 93 ~~~P~Gla~d~~~g~LyVad~~~ 115 (310)
..+|.|+++++..|.||+++++.
T Consensus 238 ~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 238 HRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred cCCccceeecCCCCcEEEEecCC
Confidence 56789999997779999998764
No 91
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.54 E-value=0.087 Score=50.37 Aligned_cols=112 Identities=12% Similarity=0.024 Sum_probs=70.8
Q ss_pred eEEEecCCCe--EEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 98 GLALHYATRQ--LYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 98 Gla~d~~~g~--LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
...+. ++|+ +|++... ..|+++|..+++.+.+.. ..+. + ....++|++..+.++-..
T Consensus 192 ~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~--~--~~~~~SPDG~~la~~~~~------------ 253 (419)
T PRK04043 192 FPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM--L--VVSDVSKDGSKLLLTMAP------------ 253 (419)
T ss_pred eEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc--E--EeeEECCCCCEEEEEEcc------------
Confidence 45665 4553 6655433 249999999988777653 2221 1 134578853367776432
Q ss_pred eecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181 173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG 230 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~ 230 (310)
..+..||.+|.++++.+.+...-..-....|+|||+.||++... ...|+++++++
T Consensus 254 ---~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 254 ---KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred ---CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 12467999998777776654332222345799999988887643 34799999875
No 92
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.51 E-value=0.0075 Score=55.64 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=66.9
Q ss_pred CCceeEEccCCCEEEEEecCC------CeEEEEEecCCCCCceee-ecC------------CCCCceeeeCCCCCCc-EE
Q 048181 200 GPAGVAISVDSSFLLVSEFTG------NRTLKYWLRGPRANSFDI-INF------------QAKPHNIKRNPGLLQT-FW 259 (310)
Q Consensus 200 ~pnGIa~~~dg~~Lyv~d~~~------~~I~~~~~~~~~~g~~~~-~~l------------~g~Pdgl~~d~~~dG~-l~ 259 (310)
=+.||++.++|. +||++-.. ++|++|+.+|.......+ ..+ ....-+|++.+ ||. ||
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLF 162 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECC--CCCEEE
Confidence 456999977775 89998888 999999987643222222 211 13577899999 998 99
Q ss_pred EEEecCCCCCC-------CCceeeEEECCC--CcEEEEEecCCCc-----cccceeEEEecCC
Q 048181 260 EAAIITRQPAG-------TPVPIGQRISAF--GAVLDTISFEAQY-----STTPISEVQPFGG 308 (310)
Q Consensus 260 va~~~~~~~~~-------~~~~~v~~~~~~--G~~~~~~~~p~~~-----~~~~~t~~~~~~~ 308 (310)
++......+-. ...-+++++|+. |+....+.-+-.. ....+|++++.++
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d 225 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPD 225 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECC
Confidence 99877622111 112567888865 5444444433111 2247777776554
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.064 Score=48.01 Aligned_cols=81 Identities=10% Similarity=-0.035 Sum_probs=51.0
Q ss_pred CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCC---CCCceeeeCCCCCCcEEEEEecCCCCCCCC
Q 048181 198 LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQ---AKPHNIKRNPGLLQTFWEAAIITRQPAGTP 272 (310)
Q Consensus 198 l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~---g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~ 272 (310)
...-+.|.|||||++|+++.. .+.++.++-- .|+..- ...+ ..|-..++.+ ||+..++...-+
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf---~G~~~~tfs~~~~~~~~~~~a~ftP--ds~Fvl~gs~dg------ 254 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTN-ASFIYLLDAF---DGTVKSTFSGYPNAGNLPLSATFTP--DSKFVLSGSDDG------ 254 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeC-CCcEEEEEcc---CCcEeeeEeeccCCCCcceeEEECC--CCcEEEEecCCC------
Confidence 345689999999998888754 4455555421 233221 1111 2455566778 888777766542
Q ss_pred ceeeEEEC-CCCcEEEEEecC
Q 048181 273 VPIGQRIS-AFGAVLDTISFE 292 (310)
Q Consensus 273 ~~~v~~~~-~~G~~~~~~~~p 292 (310)
.+..++ ..|+.+.+..-|
T Consensus 255 --~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 255 --TIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred --cEEEEEcCCCcEeeEecCC
Confidence 566666 568888888777
No 94
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.49 E-value=0.056 Score=46.70 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=59.5
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181 104 ATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183 (310)
Q Consensus 104 ~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~ 183 (310)
.++++|+++....|+.+|.++|+...- ...++ ++..+ ..++ ++.+|+... +++|+.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~-~~~~~-~~~~~--~~~~--~~~v~v~~~------------------~~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWR-FDLPG-PISGA--PVVD--GGRVYVGTS------------------DGSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEE-EECSS-CGGSG--EEEE--TTEEEEEET------------------TSEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE-eeccc-cccce--eeec--ccccccccc------------------eeeeEe
Confidence 589999998777799999988875322 22222 22222 3444 488988763 257999
Q ss_pred EcCCCCeEEEee-cC----CCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 184 YNPRSSQVTVLL-RN----LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 184 ~d~~~g~~~~~~-~~----l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
+|..+|++.-.. .. ...-.......+++.+|+... .+.|+.+++.
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~ 140 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPK 140 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETT
T ss_pred cccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecC
Confidence 998788764431 11 111112233333565666654 6777777754
No 95
>PTZ00421 coronin; Provisional
Probab=97.46 E-value=0.13 Score=50.30 Aligned_cols=161 Identities=13% Similarity=0.149 Sum_probs=91.7
Q ss_pred CcceEEEcc-CCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181 35 GGESIAFEP-VGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD 112 (310)
Q Consensus 35 ~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad 112 (310)
.-.+++|.| +++++++...++.|..++.... ...-. .. + ...+.........+++++..++++++-
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~------~~--~----l~~L~gH~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI------SD--P----IVHLQGHTKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc------Cc--c----eEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence 346899998 7888888888999888875421 11000 00 0 000111122345788874344555543
Q ss_pred C-CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181 113 A-YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV 191 (310)
Q Consensus 113 ~-~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~ 191 (310)
. ...|..+|.++++...... + .-...+.+++++ +|.+.++-.. +|.|..+|+.+++.
T Consensus 145 s~DgtVrIWDl~tg~~~~~l~---~-h~~~V~sla~sp-dG~lLatgs~-----------------Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 145 GADMVVNVWDVERGKAVEVIK---C-HSDQITSLEWNL-DGSLLCTTSK-----------------DKKLNIIDPRDGTI 202 (493)
T ss_pred eCCCEEEEEECCCCeEEEEEc---C-CCCceEEEEEEC-CCCEEEEecC-----------------CCEEEEEECCCCcE
Confidence 3 3347777887665322211 1 113467899999 4887776543 47788888877654
Q ss_pred EEeecCC--CCCceeEEccCCCEEEEEec---CCCeEEEEEec
Q 048181 192 TVLLRNL--TGPAGVAISVDSSFLLVSEF---TGNRTLKYWLR 229 (310)
Q Consensus 192 ~~~~~~l--~~pnGIa~~~dg~~Lyv~d~---~~~~I~~~~~~ 229 (310)
......- .....+.+.++++.++.+-. ..+.|..+++.
T Consensus 203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 3222221 12346778888876655432 34677777765
No 96
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.44 E-value=0.012 Score=55.50 Aligned_cols=135 Identities=11% Similarity=0.102 Sum_probs=77.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCC
Q 048181 44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN 123 (310)
Q Consensus 44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~ 123 (310)
++.+| +...++.++.++...+.+.+.. ..+.+..+++ .+++||+++....++.+|.+
T Consensus 256 ~~~vy-~~~~~g~l~ald~~tG~~~W~~--------------------~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 256 GGVVY-ALAYNGNLVALDLRSGQIVWKR--------------------EYGSVNDFAV--DGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred CCEEE-EEEcCCeEEEEECCCCCEEEee--------------------cCCCccCcEE--ECCEEEEEcCCCeEEEEECC
Confidence 34544 4446788999988765544431 1112223455 37899998877779999998
Q ss_pred CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecC--CCCC
Q 048181 124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRN--LTGP 201 (310)
Q Consensus 124 ~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~--l~~p 201 (310)
+|+...-.....+... ...++. +|.||+.+. +|.|+.+|+++|++.--..- -...
T Consensus 313 tG~~~W~~~~~~~~~~---~sp~v~--~g~l~v~~~------------------~G~l~~ld~~tG~~~~~~~~~~~~~~ 369 (394)
T PRK11138 313 GGVELWSQSDLLHRLL---TAPVLY--NGYLVVGDS------------------EGYLHWINREDGRFVAQQKVDSSGFL 369 (394)
T ss_pred CCcEEEcccccCCCcc---cCCEEE--CCEEEEEeC------------------CCEEEEEECCCCCEEEEEEcCCCcce
Confidence 8864321111112112 233444 489999864 37888999888875322211 1111
Q ss_pred ceeEEccCCCEEEEEecCCCeEEEEE
Q 048181 202 AGVAISVDSSFLLVSEFTGNRTLKYW 227 (310)
Q Consensus 202 nGIa~~~dg~~Lyv~d~~~~~I~~~~ 227 (310)
...++. ++ .|||. +..+.|+.+.
T Consensus 370 s~P~~~-~~-~l~v~-t~~G~l~~~~ 392 (394)
T PRK11138 370 SEPVVA-DD-KLLIQ-ARDGTVYAIT 392 (394)
T ss_pred eCCEEE-CC-EEEEE-eCCceEEEEe
Confidence 222332 33 68887 4577787775
No 97
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.077 Score=47.78 Aligned_cols=213 Identities=13% Similarity=0.109 Sum_probs=120.0
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCeEEEEECC-Cc-eEEeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCCeE
Q 048181 32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAP-DG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATRQL 108 (310)
Q Consensus 32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~-g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~L 108 (310)
...--.+++|.++|+.++++..+..|--++.- |. ...+.+ ..| .+..+++++.+.
T Consensus 64 H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf----------------------~spv~~~q~hp~k~n~ 121 (405)
T KOG1273|consen 64 HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF----------------------DSPVWGAQWHPRKRNK 121 (405)
T ss_pred cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc----------------------cCccceeeeccccCCe
Confidence 33345689999999999999988888888754 33 233332 223 355565555555
Q ss_pred EEEe-CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181 109 YIAD-AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR 187 (310)
Q Consensus 109 yVad-~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~ 187 (310)
.|+. ....-+.++......+.+....++..-..+.-..+|+. |...+|.+ ..|.+..||..
T Consensus 122 ~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~-g~yIitGt-----------------sKGkllv~~a~ 183 (405)
T KOG1273|consen 122 CVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR-GKYIITGT-----------------SKGKLLVYDAE 183 (405)
T ss_pred EEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC-CCEEEEec-----------------CcceEEEEecc
Confidence 5543 22222233322233344443333321122333356664 55555443 35889999877
Q ss_pred CCeEEEee--cCCCCCceeEEccCCCEEEEEecCCCeEEEEEec---CC-CCCceee-----ecCCCCC-ceeeeCCCCC
Q 048181 188 SSQVTVLL--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR---GP-RANSFDI-----INFQAKP-HNIKRNPGLL 255 (310)
Q Consensus 188 ~g~~~~~~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~---~~-~~g~~~~-----~~l~g~P-dgl~~d~~~d 255 (310)
+.+..... .....-.-|-++..|+ .++.++..+.|+.|++. .. +.+.++. +-+...+ ..++++. +
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~--d 260 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG--D 260 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC--C
Confidence 65432211 1123346788999887 56677888888888865 11 2344432 1112223 3477888 9
Q ss_pred CcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCCC
Q 048181 256 QTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEAQ 294 (310)
Q Consensus 256 G~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~~ 294 (310)
|.+.+|.... ...+..+.. -|.++.+++.+.|
T Consensus 261 geYv~a~s~~-------aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 261 GEYVCAGSAR-------AHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred ccEEEecccc-------ceeEEEEecCCcceeeeecCCch
Confidence 9777776532 134555554 5888888888765
No 98
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.36 E-value=0.11 Score=49.87 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=67.7
Q ss_pred eeEEEecCCC-eEEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEe
Q 048181 97 FGLALHYATR-QLYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 97 ~Gla~d~~~g-~LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~ 171 (310)
...++. ++| +|+.+... ..|+.+|.++++.+.+. ...+. -..++++|+ |+ |+++-...
T Consensus 207 ~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~g~----~~~~~wSPD-G~~La~~~~~~---------- 269 (429)
T PRK01742 207 MSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-SFRGH----NGAPAFSPD-GSRLAFASSKD---------- 269 (429)
T ss_pred ccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-cCCCc----cCceeECCC-CCEEEEEEecC----------
Confidence 356776 455 45443222 24888998887655543 22221 135789995 64 65543211
Q ss_pred eeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181 172 NITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG 230 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~ 230 (310)
..-.||.+|.++++.+.+...-......+|+|||+.|+++... ..+||.++.++
T Consensus 270 -----g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 270 -----GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred -----CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 1225888888777766665444445689999999987776543 44677776654
No 99
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.26 E-value=0.017 Score=53.89 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=76.5
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCC---CCe----EEEEcCCCccCccceeEeeeecCCC
Q 048181 106 RQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG---TGV----VYFTDASGVYDFRTIVKLNITNDST 178 (310)
Q Consensus 106 g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~---~G~----lyvtd~~~~~~~~~~~~~~~~~~~~ 178 (310)
..|+-++-..|++.+|+++.++..+. . ..+|.+.+--. +|+ +.+||.... ...
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~lq~~~---~----Gr~NNVDvrygf~l~g~~vDlavas~R~~g-------------~n~ 128 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKELQSLP---V----GRPNNVDVRYGFPLNGKTVDLAVASDRSDG-------------RNS 128 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEE----S----S-EEEEEEEEEEEETTEEEEEEEEEE-CCC-------------T-E
T ss_pred ceEEEEeCCCCEEEEcCCCcEEEeec---C----CCcceeeeecceecCCceEEEEEEecCcCC-------------CCe
Confidence 34545666678999999987665441 1 23455444310 111 122332100 001
Q ss_pred ceEEEEcCCCCeEEEee-------cCCCCCceeEEcc---CCCEEEEEecCCCeEEEEEecCCCCCce--e-e--ecCCC
Q 048181 179 GRLLSYNPRSSQVTVLL-------RNLTGPAGVAISV---DSSFLLVSEFTGNRTLKYWLRGPRANSF--D-I--INFQA 243 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~-------~~l~~pnGIa~~~---dg~~Lyv~d~~~~~I~~~~~~~~~~g~~--~-~--~~l~g 243 (310)
=++|++|+.++.++.+. ..+.-|.|+|+-. +|+...+.....+++..|.+.....|.. + + ..++.
T Consensus 129 l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s 208 (381)
T PF02333_consen 129 LRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS 208 (381)
T ss_dssp EEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS
T ss_pred EEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC
Confidence 15899998878776553 2344578999953 4552222334558888888763333432 2 2 45566
Q ss_pred CCceeeeCCCCCCcEEEEEecC
Q 048181 244 KPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 244 ~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
-|-|+.+|.+ .|.||+++-..
T Consensus 209 Q~EGCVVDDe-~g~LYvgEE~~ 229 (381)
T PF02333_consen 209 QPEGCVVDDE-TGRLYVGEEDV 229 (381)
T ss_dssp -EEEEEEETT-TTEEEEEETTT
T ss_pred cceEEEEecc-cCCEEEecCcc
Confidence 7999999986 88999999886
No 100
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.25 E-value=0.077 Score=45.11 Aligned_cols=112 Identities=12% Similarity=0.134 Sum_probs=67.3
Q ss_pred eeeEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 96 TFGLALHYATRQLYIADA--YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 96 P~Gla~d~~~g~LyVad~--~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
-..+++.+.+.++.|+.. ...+..+|.++..+..+ .. ...|.+..+|+ |++.++-...
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~----~~---~~~n~i~wsP~-G~~l~~~g~~------------ 121 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF----GT---QPRNTISWSPD-GRFLVLAGFG------------ 121 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee----cC---CCceEEEECCC-CCEEEEEEcc------------
Confidence 567899744445555543 23477778765433333 11 23578999995 8776653211
Q ss_pred ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC-----CCeEEEEEecC
Q 048181 174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT-----GNRTLKYWLRG 230 (310)
Q Consensus 174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~-----~~~I~~~~~~~ 230 (310)
..+|.|..+|..+.+..... .-.....++|||||+++..+.+. .+.+..+++.|
T Consensus 122 --n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 122 --NLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred --CCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 12477888887644432222 22356899999999988777664 33445555554
No 101
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.22 E-value=0.041 Score=50.48 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=86.7
Q ss_pred CCeEEEEeCC-----CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCc
Q 048181 105 TRQLYIADAY-----SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG 179 (310)
Q Consensus 105 ~g~LyVad~~-----~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G 179 (310)
..|+||.|.. .+++.||.++++..-. .+. . ..+ .+++++++..+|++++......+. ..+-
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGm---i~~-g-~~~-~~~~spdgk~~y~a~T~~sR~~rG--------~RtD 67 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGM---IDT-G-FLG-NVALSPDGKTIYVAETFYSRGTRG--------ERTD 67 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEE---EEE-E-SSE-EEEE-TTSSEEEEEEEEEEETTEE--------EEEE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEE---eec-c-cCC-ceeECCCCCEEEEEEEEEeccccc--------ccee
Confidence 4689998863 2589999888764322 221 1 123 378899767888877642111111 1112
Q ss_pred eEEEEcCCCCeEEE--eec------CCCCCceeEEccCCCEEEEEec-CCCeEEEEEecCCCCCceeeecCCCCCceeee
Q 048181 180 RLLSYNPRSSQVTV--LLR------NLTGPAGVAISVDSSFLLVSEF-TGNRTLKYWLRGPRANSFDIINFQAKPHNIKR 250 (310)
Q Consensus 180 ~l~~~d~~~g~~~~--~~~------~l~~pnGIa~~~dg~~Lyv~d~-~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~ 250 (310)
-|-.||.+|...+. .+. .+..++-++++.||+++||.+. ....|.++|+...+. ..+ ...|| -.++--
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv-v~e-i~~PG-C~~iyP 144 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV-VGE-IDTPG-CWLIYP 144 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE-EEE-EEGTS-EEEEEE
T ss_pred EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCce-eee-ecCCC-EEEEEe
Confidence 46778887764432 222 2457899999999999999875 456789999865321 111 33443 222222
Q ss_pred CCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEE
Q 048181 251 NPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVL 286 (310)
Q Consensus 251 d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~ 286 (310)
.. +.++..-|..++ -.-+.+|.+|+..
T Consensus 145 ~~--~~~F~~lC~DGs-------l~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 145 SG--NRGFSMLCGDGS-------LLTVTLDADGKEA 171 (342)
T ss_dssp EE--TTEEEEEETTSC-------EEEEEETSTSSEE
T ss_pred cC--CCceEEEecCCc-------eEEEEECCCCCEe
Confidence 23 334555555553 2346677777765
No 102
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.22 E-value=0.11 Score=49.68 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=100.0
Q ss_pred CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181 35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY 114 (310)
Q Consensus 35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~ 114 (310)
.|.++++.++|.+.++... +.|.-+...++.... +..-.|.++|+. +++...+.-..
T Consensus 407 QP~~lav~~d~~~avv~~~-~~iv~l~~~~~~~~~---------------------~~~y~~s~vAv~-~~~~~vaVGG~ 463 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACI-SDIVLLQDQTKVSSI---------------------PIGYESSAVAVS-PDGSEVAVGGQ 463 (603)
T ss_pred CceeEEEcCCCCEEEEEec-CcEEEEecCCcceee---------------------ccccccceEEEc-CCCCEEEEecc
Confidence 6889999999876666653 345555544433321 233467789997 55555433333
Q ss_pred Cc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEE-EcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181 115 SG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYF-TDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT 192 (310)
Q Consensus 115 ~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyv-td~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~ 192 (310)
.+ |..+.+.++.....+...+ .-..+.+++.+|+ |..+. +|. ++.+..||..+.++.
T Consensus 464 Dgkvhvysl~g~~l~ee~~~~~--h~a~iT~vaySpd-~~yla~~Da------------------~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 464 DGKVHVYSLSGDELKEEAKLLE--HRAAITDVAYSPD-GAYLAAGDA------------------SRKVVLYDVASREVK 522 (603)
T ss_pred cceEEEEEecCCcccceeeeec--ccCCceEEEECCC-CcEEEEecc------------------CCcEEEEEcccCcee
Confidence 33 6666665544322222111 1234679999995 76554 343 356777877666553
Q ss_pred EeecC--CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCC
Q 048181 193 VLLRN--LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNP 252 (310)
Q Consensus 193 ~~~~~--l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~ 252 (310)
...-. -..-|+++|+|+.+ ++.+-+..-.|+.|.++.|... ... +...+ ...+++-.
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~~~-i~iknAH~~g-Vn~v~wld 583 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPAKH-IIIKNAHLGG-VNSVAWLD 583 (603)
T ss_pred cceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChhhh-eEeccccccC-ceeEEEec
Confidence 22111 23569999999975 7778888889999998865322 222 33333 55555544
No 103
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.19 E-value=0.18 Score=47.81 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=44.2
Q ss_pred CCc-eEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 177 STG-RLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 177 ~~G-~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
.+| .|-.||.++++++....++..-..+.+++||+.+.++ ..+.+||.++++.
T Consensus 379 ~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva-Ndr~el~vididn 432 (668)
T COG4946 379 NDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA-NDRFELWVIDIDN 432 (668)
T ss_pred cCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE-cCceEEEEEEecC
Confidence 345 6888888889999999999988999999999976655 4678899999975
No 104
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.093 Score=50.72 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=101.4
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEEC-CCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181 28 LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQA-PDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA 104 (310)
Q Consensus 28 ~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~-~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~ 104 (310)
.+.+...+-.+++|.++|..+.....+++|..++. +.+. +++. .-......++++ +
T Consensus 198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--------------------gH~~~v~~~~f~-p 256 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--------------------GHSTYVTSVAFS-P 256 (456)
T ss_pred cccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec--------------------CCCCceEEEEec-C
Confidence 33555667889999999997777777888887777 3322 2221 122344688997 5
Q ss_pred CCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181 105 TRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183 (310)
Q Consensus 105 ~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~ 183 (310)
.|+++++-...+ |...|..+++....... .-...+.+++.+ +|+++++-+. +|.+..
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~----hs~~is~~~f~~-d~~~l~s~s~-----------------d~~i~v 314 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKG----HSDGISGLAFSP-DGNLLVSASY-----------------DGTIRV 314 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeec----cCCceEEEEECC-CCCEEEEcCC-----------------CccEEE
Confidence 677777644444 77778777654332221 112457889999 4888777532 478888
Q ss_pred EcCCCCeE--EEeecCCCCC---ceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 184 YNPRSSQV--TVLLRNLTGP---AGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 184 ~d~~~g~~--~~~~~~l~~p---nGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
+|..++.. .........+ .-++|+|++++|++. +..+.+.-+++.
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLR 364 (456)
T ss_pred EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEcc
Confidence 89887773 2333344445 889999999966554 445555555554
No 105
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.13 E-value=0.17 Score=44.85 Aligned_cols=207 Identities=12% Similarity=0.130 Sum_probs=123.6
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA 113 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~ 113 (310)
..-+++++.++|+..++..-++.++-+|..++.....+ | .-...-.+++++ .+.+-.|+-.
T Consensus 64 H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f---------~---------GH~~dVlsva~s-~dn~qivSGS 124 (315)
T KOG0279|consen 64 HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF---------V---------GHTKDVLSVAFS-TDNRQIVSGS 124 (315)
T ss_pred eEecceEEccCCceEEeccccceEEEEEecCCcEEEEE---------E---------ecCCceEEEEec-CCCceeecCC
Confidence 45668899999998888888898888998865432221 1 111234588997 6777766643
Q ss_pred C-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181 114 Y-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT 192 (310)
Q Consensus 114 ~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~ 192 (310)
. +.|...+..++...++....+ -...+-+.++|...+.|+...+ .++.|-.+|.++-++.
T Consensus 125 rDkTiklwnt~g~ck~t~~~~~~---~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 125 RDKTIKLWNTLGVCKYTIHEDSH---REWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLR 185 (315)
T ss_pred CcceeeeeeecccEEEEEecCCC---cCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchh
Confidence 3 337777766654444432211 2456788888853355554332 3456666776554443
Q ss_pred E-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecCCCCCCC
Q 048181 193 V-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGT 271 (310)
Q Consensus 193 ~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~ 271 (310)
. ....-.+-|-+++||||. |..+--..++++-.+++..+ ......-..--.-++|.+ ..+|++..-.
T Consensus 186 ~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k--~lysl~a~~~v~sl~fsp---nrywL~~at~------ 253 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK--NLYSLEAFDIVNSLCFSP---NRYWLCAATA------ 253 (315)
T ss_pred hccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc--eeEeccCCCeEeeEEecC---CceeEeeccC------
Confidence 2 233345679999999996 66665566778778876422 122111111245688888 4688776554
Q ss_pred CceeeEEECC-CCcEEEEEecC
Q 048181 272 PVPIGQRISA-FGAVLDTISFE 292 (310)
Q Consensus 272 ~~~~v~~~~~-~G~~~~~~~~p 292 (310)
..|..+|- .+++++.+.+.
T Consensus 254 --~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 254 --TSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred --CceEEEeccchhhhhhcccc
Confidence 24666664 35556555543
No 106
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.09 E-value=0.29 Score=48.27 Aligned_cols=124 Identities=12% Similarity=0.142 Sum_probs=64.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCC
Q 048181 44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN 123 (310)
Q Consensus 44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~ 123 (310)
+|. +|+....+.|+.++...+...+........ .............|+++. ++++|++.....++.+|.+
T Consensus 69 ~g~-vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~-------~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~ 138 (527)
T TIGR03075 69 DGV-MYVTTSYSRVYALDAKTGKELWKYDPKLPD-------DVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAK 138 (527)
T ss_pred CCE-EEEECCCCcEEEEECCCCceeeEecCCCCc-------ccccccccccccccceEE--CCEEEEEcCCCEEEEEECC
Confidence 455 555556788999998866555542110000 000000000112467774 7899998777779999999
Q ss_pred CCeEEEeeccCCCc-cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181 124 GRLATQLATGAEGQ-AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV 191 (310)
Q Consensus 124 ~~~~~~~~~~~~g~-~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~ 191 (310)
+|+..--....+-. ......--++. +|.||+...... ...+|.|+.+|..+|+.
T Consensus 139 TGk~~W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~------------~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 139 TGKVVWSKKNGDYKAGYTITAAPLVV--KGKVITGISGGE------------FGVRGYVTAYDAKTGKL 193 (527)
T ss_pred CCCEEeecccccccccccccCCcEEE--CCEEEEeecccc------------cCCCcEEEEEECCCCce
Confidence 88763211111100 00111122333 478888754321 12346677777766654
No 107
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.26 Score=47.60 Aligned_cols=186 Identities=15% Similarity=0.194 Sum_probs=104.9
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC-C
Q 048181 37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY-S 115 (310)
Q Consensus 37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~-~ 115 (310)
-.+.+.++|+.+.....++.|.-+.......... ..+......-..+++. .++...++-.. .
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~----------------~~l~~h~~~v~~~~fs-~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLL----------------RELSGHTRGVSDVAFS-PDGSYLLSGSDDK 225 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhh----------------ccccccccceeeeEEC-CCCcEEEEecCCc
Confidence 3466778888655554555555555432220000 0000112234578886 67876665433 3
Q ss_pred cEEEEeC-CCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181 116 GLLVVGP-NGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV 193 (310)
Q Consensus 116 gi~~id~-~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~ 193 (310)
.|..+|. +.+.. +++ .| +....+.++++++ |+++++-+. ++.+..+|..+++...
T Consensus 226 tiriwd~~~~~~~~~~l----~g-H~~~v~~~~f~p~-g~~i~Sgs~-----------------D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTL----KG-HSTYVTSVAFSPD-GNLLVSGSD-----------------DGTVRIWDVRTGECVR 282 (456)
T ss_pred eEEEeeccCCCeEEEEe----cC-CCCceEEEEecCC-CCEEEEecC-----------------CCcEEEEeccCCeEEE
Confidence 3555665 33332 222 22 3356689999995 888887653 4677778887776655
Q ss_pred eecCC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC-ceeeecC--CCCCceeeeCCCCCCcEEEEEecC
Q 048181 194 LLRNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN-SFDIINF--QAKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 194 ~~~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g-~~~~~~l--~g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
....- ..-++++|++||+.|+.+ +..+.|..+++...... ..++... +..-.-+.+++ +|.+.+.....
T Consensus 283 ~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp--~~~~ll~~~~d 355 (456)
T KOG0266|consen 283 KLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP--NGKYLLSASLD 355 (456)
T ss_pred eeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC--CCcEEEEecCC
Confidence 44433 355889999999865555 66889999988643211 0111111 11125677777 88665555544
No 108
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.06 E-value=0.026 Score=53.15 Aligned_cols=185 Identities=6% Similarity=0.060 Sum_probs=111.0
Q ss_pred cceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCC
Q 048181 36 GESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYS 115 (310)
Q Consensus 36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~ 115 (310)
-..+.|..+|.-+.+...++.|.-+|.+.+.....+ .....|.-+.+++.+.++|++-...
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f-------------------~~~~~~~cvkf~pd~~n~fl~G~sd 321 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF-------------------HLDKVPTCVKFHPDNQNIFLVGGSD 321 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEE-------------------ecCCCceeeecCCCCCcEEEEecCC
Confidence 456777777777777777777777777755433221 1223456677875454888876554
Q ss_pred -cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe-EEE
Q 048181 116 -GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-VTV 193 (310)
Q Consensus 116 -gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-~~~ 193 (310)
.|..+|..++++ ...++ ..+...|++.+-+ +|+=+++.+.. +.+..++-...- .+.
T Consensus 322 ~ki~~wDiRs~kv---vqeYd-~hLg~i~~i~F~~-~g~rFissSDd-----------------ks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 322 KKIRQWDIRSGKV---VQEYD-RHLGAILDITFVD-EGRRFISSSDD-----------------KSVRIWENRIPVPIKN 379 (503)
T ss_pred CcEEEEeccchHH---HHHHH-hhhhheeeeEEcc-CCceEeeeccC-----------------ccEEEEEcCCCccchh
Confidence 499999887763 34443 4567789999998 48877876542 223333221111 111
Q ss_pred eec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce-ee---ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181 194 LLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF-DI---INFQAKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 194 ~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~-~~---~~l~g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
... ....=-.|+++|.++ .+.+++..++|..|...-+..-.. +. -..+|++-.+.+.+ ||.+.++-..
T Consensus 380 i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp--DG~~l~SGds 452 (503)
T KOG0282|consen 380 IADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP--DGRTLCSGDS 452 (503)
T ss_pred hcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC--CCCeEEeecC
Confidence 111 111113688999998 788999999999987654322111 11 22356777777777 7766555444
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.073 Score=47.66 Aligned_cols=110 Identities=11% Similarity=0.070 Sum_probs=66.0
Q ss_pred eEEEecCCCeEEEEeCCC-cEEEEeCCC---CeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 98 GLALHYATRQLYIADAYS-GLLVVGPNG---RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~~-gi~~id~~~---~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
-.|+| ++|-++++-.+. .|..+|... |-.+.+. +.......-++|.+++++-.+.+++..
T Consensus 145 i~AfD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~--i~~~~~~ew~~l~FS~dGK~iLlsT~~------------- 208 (311)
T KOG1446|consen 145 IAAFD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFS--ITDNDEAEWTDLEFSPDGKSILLSTNA------------- 208 (311)
T ss_pred ceeEC-CCCcEEEEecCCCeEEEEEecccCCCCceeEc--cCCCCccceeeeEEcCCCCEEEEEeCC-------------
Confidence 35787 688777654444 466677643 2122221 111234456899999963345566543
Q ss_pred ecCCCceEEEEcCCCCeEEEeecCCC----CCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 174 TNDSTGRLLSYNPRSSQVTVLLRNLT----GPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 174 ~~~~~G~l~~~d~~~g~~~~~~~~l~----~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
+.++.+|.-+|.+..-..... .|-+-+|+||+++++ +-...++|..|.+.
T Consensus 209 -----s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl-~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 209 -----SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL-SGSDDGTIHVWNLE 262 (311)
T ss_pred -----CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE-EecCCCcEEEEEcC
Confidence 456777766666544333333 344888999999654 55567888888774
No 110
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.95 E-value=0.19 Score=46.37 Aligned_cols=131 Identities=21% Similarity=0.268 Sum_probs=73.2
Q ss_pred ceeeEEEecCCCeEEEEeCCC-------cEEEEeCCCCeEEEee--ccC-------CC-ccccCccceEEeCCCCe-EEE
Q 048181 95 RTFGLALHYATRQLYIADAYS-------GLLVVGPNGRLATQLA--TGA-------EG-QAFHFLDGLDVDQGTGV-VYF 156 (310)
Q Consensus 95 ~P~Gla~d~~~g~LyVad~~~-------gi~~id~~~~~~~~~~--~~~-------~g-~~~~~pndvavd~~~G~-lyv 156 (310)
.+-||++. .+|.+||++.+. .|+++++++...+.+. ... .+ +.=....+|+++++ |+ ||+
T Consensus 86 D~Egi~~~-~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~d-G~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVP-PDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPD-GRTLFA 163 (326)
T ss_pred ChhHeEEe-cCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCC-CCEEEE
Confidence 45599994 899999987544 5999998854333331 111 11 11123568999995 76 887
Q ss_pred EcCCCccCccceeEeeeecCCCceEEEEcCCC-C----eEEEeec------CCCCCceeEEccCCCEEEEEecC------
Q 048181 157 TDASGVYDFRTIVKLNITNDSTGRLLSYNPRS-S----QVTVLLR------NLTGPAGVAISVDSSFLLVSEFT------ 219 (310)
Q Consensus 157 td~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~-g----~~~~~~~------~l~~pnGIa~~~dg~~Lyv~d~~------ 219 (310)
.--+......... .......-++++||+.+ + +.....+ .-..+..|++-+|++ |||-|-.
T Consensus 164 ~~E~~l~~d~~~~--~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~ 240 (326)
T PF13449_consen 164 AMESPLKQDGPRA--NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTG 240 (326)
T ss_pred EECccccCCCccc--ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCcc
Confidence 6543311110000 00011124688888765 2 1122223 234556777888887 7787654
Q ss_pred -CCeEEEEEecC
Q 048181 220 -GNRTLKYWLRG 230 (310)
Q Consensus 220 -~~~I~~~~~~~ 230 (310)
..+|+++++..
T Consensus 241 ~~~ri~~v~l~~ 252 (326)
T PF13449_consen 241 NYKRIYRVDLSD 252 (326)
T ss_pred ceEEEEEEEccc
Confidence 34677777653
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.14 Score=48.20 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=88.4
Q ss_pred CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee-eEEEecCCCe-EEEEe
Q 048181 35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF-GLALHYATRQ-LYIAD 112 (310)
Q Consensus 35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~-Gla~d~~~g~-LyVad 112 (310)
+-.++-|+|.-.++.+.-.++++.-+.-+|+.-.... + ..-...|. -.++. ++|. ..++.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lq-S----------------~~l~~fPi~~a~f~-p~G~~~i~~s 276 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQ-S----------------IHLEKFPIQKAEFA-PNGHSVIFTS 276 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhhe-e----------------eeeccCccceeeec-CCCceEEEec
Confidence 4457889988777888766776555544443211100 0 01112343 23454 5665 33333
Q ss_pred CCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181 113 AYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV 191 (310)
Q Consensus 113 ~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~ 191 (310)
..+. ++.+|+.++++..+.. ..|.+-.+..-..|+++ +++..... .+|.|+.+...|++.
T Consensus 277 ~rrky~ysyDle~ak~~k~~~-~~g~e~~~~e~FeVShd-~~fia~~G-----------------~~G~I~lLhakT~el 337 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKP-PYGVEEKSMERFEVSHD-SNFIAIAG-----------------NNGHIHLLHAKTKEL 337 (514)
T ss_pred ccceEEEEeeccccccccccC-CCCcccchhheeEecCC-CCeEEEcc-----------------cCceEEeehhhhhhh
Confidence 3322 8889998887766532 23322233455677774 66544332 247777777666543
Q ss_pred EEeecCCC---CCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 192 TVLLRNLT---GPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 192 ~~~~~~l~---~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
+..+. ...+++|+.|++.||++. ..+.||.+++..
T Consensus 338 ---i~s~KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 338 ---ITSFKIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQ 375 (514)
T ss_pred ---hheeeeccEEeeEEEecCCcEEEEEc-CCceEEEEecCC
Confidence 22222 346899999998777664 556999998864
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.86 E-value=0.3 Score=46.65 Aligned_cols=189 Identities=15% Similarity=0.158 Sum_probs=107.2
Q ss_pred cceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181 22 PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL 101 (310)
Q Consensus 22 ~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~ 101 (310)
.+++.+++|.++..++-++-.. +. ++++...+.|++=+..++...... -....-.|++.
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~-~d-i~vGTtrN~iL~Gt~~~~f~~~v~-------------------gh~delwgla~ 376 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGK-GD-ILVGTTRNFILQGTLENGFTLTVQ-------------------GHGDELWGLAT 376 (626)
T ss_pred cccccccCchhcCCeeEEecCC-Cc-EEEeeccceEEEeeecCCceEEEE-------------------ecccceeeEEc
Confidence 4677889998888887777443 34 788888888887766655432211 01125679999
Q ss_pred ecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181 102 HYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR 180 (310)
Q Consensus 102 d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~ 180 (310)
+ ....+|++....+ +...+ + .+.. +....+. + ..-+.++| .|.+-+.. ..|+
T Consensus 377 h-ps~~q~~T~gqdk~v~lW~-~-~k~~-wt~~~~d-~---~~~~~fhp-sg~va~Gt------------------~~G~ 429 (626)
T KOG2106|consen 377 H-PSKNQLLTCGQDKHVRLWN-D-HKLE-WTKIIED-P---AECADFHP-SGVVAVGT------------------ATGR 429 (626)
T ss_pred C-CChhheeeccCcceEEEcc-C-Ccee-EEEEecC-c---eeEeeccC-cceEEEee------------------ccce
Confidence 7 5677777655544 33334 2 2221 1111111 1 12456777 46433322 2478
Q ss_pred EEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce--eeecCCC-CCceeeeCCCCCCc
Q 048181 181 LLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF--DIINFQA-KPHNIKRNPGLLQT 257 (310)
Q Consensus 181 l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~--~~~~l~g-~Pdgl~~d~~~dG~ 257 (310)
.+.+|..+.....+...-..-+-+.++|||.+| ..-+..+.|+.|.++.. |.. ++....+ .-..|.+.. |++
T Consensus 430 w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l-Avgs~d~~iyiy~Vs~~--g~~y~r~~k~~gs~ithLDwS~--Ds~ 504 (626)
T KOG2106|consen 430 WFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFL-AVGSHDNHIYIYRVSAN--GRKYSRVGKCSGSPITHLDWSS--DSQ 504 (626)
T ss_pred EEEEecccceeEEEEecCCceEEEEEcCCCCEE-EEecCCCeEEEEEECCC--CcEEEEeeeecCceeEEeeecC--CCc
Confidence 888887654433333233334789999999855 44567788888887643 322 1111122 224566666 666
Q ss_pred EEEEEe
Q 048181 258 FWEAAI 263 (310)
Q Consensus 258 l~va~~ 263 (310)
+.++..
T Consensus 505 ~~~~~S 510 (626)
T KOG2106|consen 505 FLVSNS 510 (626)
T ss_pred eEEecc
Confidence 666543
No 113
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.85 E-value=0.093 Score=49.10 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=72.3
Q ss_pred EEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCe
Q 048181 47 AFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRL 126 (310)
Q Consensus 47 l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~ 126 (310)
.+|+...++.++.++...+...+.. ........++ .++++|+++....++.+|.++|+
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~~W~~--------------------~~~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRVLWKR--------------------DASSYQGPAV--DDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcEEEee--------------------ccCCccCceE--eCCEEEEECCCCeEEEEECCCCc
Confidence 3455556778888887654433321 0112233455 37899998766569999998876
Q ss_pred EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCC--CCCcee
Q 048181 127 ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL--TGPAGV 204 (310)
Q Consensus 127 ~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l--~~pnGI 204 (310)
...-.....+.....| ++. ++.+|+.+. +|.|+.+|+++|+..-..... ......
T Consensus 301 ~~W~~~~~~~~~~ssp---~i~--g~~l~~~~~------------------~G~l~~~d~~tG~~~~~~~~~~~~~~~sp 357 (377)
T TIGR03300 301 ELWKNDELKYRQLTAP---AVV--GGYLVVGDF------------------EGYLHWLSREDGSFVARLKTDGSGIASPP 357 (377)
T ss_pred EEEccccccCCccccC---EEE--CCEEEEEeC------------------CCEEEEEECCCCCEEEEEEcCCCccccCC
Confidence 4321112222222222 343 478888764 478999998888764322211 112222
Q ss_pred EEccCCCEEEEEecCCCeEEEE
Q 048181 205 AISVDSSFLLVSEFTGNRTLKY 226 (310)
Q Consensus 205 a~~~dg~~Lyv~d~~~~~I~~~ 226 (310)
++. ++ .||+.. ..+.|+.|
T Consensus 358 ~~~-~~-~l~v~~-~dG~l~~~ 376 (377)
T TIGR03300 358 VVV-GD-GLLVQT-RDGDLYAF 376 (377)
T ss_pred EEE-CC-EEEEEe-CCceEEEe
Confidence 333 33 477664 46666655
No 114
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.83 E-value=0.78 Score=47.57 Aligned_cols=163 Identities=10% Similarity=0.030 Sum_probs=90.2
Q ss_pred CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-eC
Q 048181 35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-DA 113 (310)
Q Consensus 35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d~ 113 (310)
.-.+++|+++|+++.+...++.|..++.......-. .. ..+ .... ........+++++..+..+++ +.
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----~~--~~~----~~~~-~~~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----DI--HYP----VVEL-ASRSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc----cc--ccc----eEEe-cccCceeeEEeccCCCCEEEEEeC
Confidence 456799999999888888889888887542110000 00 000 0000 011234567776434444444 33
Q ss_pred CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181 114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV 193 (310)
Q Consensus 114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~ 193 (310)
...|..+|..+++..... .+ +-.....+++++.++.+++|-.. +|.+..+|..++....
T Consensus 554 Dg~v~lWd~~~~~~~~~~---~~-H~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEM---KE-HEKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIG 612 (793)
T ss_pred CCeEEEEECCCCeEEEEe---cC-CCCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEE
Confidence 334667787765432211 11 12345688888644777766543 3667777766554332
Q ss_pred eecCCCCCceeEEc-cCCCEEEEEecCCCeEEEEEecC
Q 048181 194 LLRNLTGPAGVAIS-VDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 194 ~~~~l~~pnGIa~~-~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
....-.....+.|+ ++|+ ++++-+..+.|+.|++..
T Consensus 613 ~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 613 TIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 22222334667775 4565 566667888999998864
No 115
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.83 E-value=0.019 Score=52.56 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=71.5
Q ss_pred CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC---------e
Q 048181 152 GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN---------R 222 (310)
Q Consensus 152 G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~---------~ 222 (310)
.++||.|.... .-.++++.+|.+++++.=+++.-..+| ++++|||+.+|++++.=. -
T Consensus 3 ~rvyV~D~~~~-------------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVFF-------------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GGG-------------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCccc-------------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence 68999997531 123699999999998876666555666 789999999999997321 2
Q ss_pred EEEEEecCCC-CCceee-e--cC--CCCCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCC
Q 048181 223 TLKYWLRGPR-ANSFDI-I--NF--QAKPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEA 293 (310)
Q Consensus 223 I~~~~~~~~~-~g~~~~-~--~l--~g~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~ 293 (310)
|..||...-. .++.++ . .. -.++..+++.. ||. +||.-...- ..|-.+| ..+|++..+..|.
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~--dgk~~~V~N~TPa-------~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA--DGKFLYVQNFTPA-------TSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T--TSSEEEEEEESSS-------EEEEEEETTTTEEEEEEEGTS
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEcc--CCcEEEEEccCCC-------CeEEEEECCCCceeeeecCCC
Confidence 4455543210 111222 1 11 12567788888 785 677665542 4566666 4567777777763
No 116
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.81 E-value=0.22 Score=48.62 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=98.8
Q ss_pred eEEEccCCCEEEEEeCCC------------------eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeE
Q 048181 38 SIAFEPVGGAFYTGVADG------------------RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGL 99 (310)
Q Consensus 38 gia~d~~G~l~~~d~~~g------------------~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gl 99 (310)
.+++|+.+.++|+...++ +|+.++.+.+...+...... .....+ .....|.-.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~--------~~~~~~-~~~s~p~~~ 291 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP--------HDLWDY-DGPNQPSLA 291 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC--------CCCccc-ccCCCCeEE
Confidence 467887666677776554 79999988666555421100 000000 011112111
Q ss_pred EEecCCC----eEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 100 ALHYATR----QLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 100 a~d~~~g----~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
.+...+| .+|+......++.+|+++|+..-- .... -.+++.++ +.+|+...........-.......
T Consensus 292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~-~~~~------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~ 362 (488)
T cd00216 292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA-RPEV------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKK 362 (488)
T ss_pred eccccCCCeeEEEEEECCCceEEEEECCCCcEeeE-eEee------ccccccCC--ceEEEccccccccCcccccCCCCC
Confidence 1100123 356554444488999988875321 1111 12455564 788885322100000000000011
Q ss_pred CCCceEEEEcCCCCeEEEeecCCC---------CC--c-eeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC
Q 048181 176 DSTGRLLSYNPRSSQVTVLLRNLT---------GP--A-GVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ 242 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~~~~~l~---------~p--n-GIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~ 242 (310)
..+|+|+.+|..+|+..--. ... .| . .++. .++.||+.+ ..++|+.++.+. |+..- ..++
T Consensus 363 ~~~G~l~AlD~~tG~~~W~~-~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~t---G~~lW~~~~~ 435 (488)
T cd00216 363 PGKGGLAALDPKTGKVVWEK-REGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATT---GKELWKFRTP 435 (488)
T ss_pred CCceEEEEEeCCCCcEeeEe-eCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCC---CceeeEEECC
Confidence 24688999999888753221 111 11 1 2333 345688876 678888888643 33211 2222
Q ss_pred ----CCCceeeeCCCCCCcEEEEEecCC
Q 048181 243 ----AKPHNIKRNPGLLQTFWEAAIITR 266 (310)
Q Consensus 243 ----g~Pdgl~~d~~~dG~l~va~~~~~ 266 (310)
..| +.... +|++||+...+.
T Consensus 436 ~~~~a~P--~~~~~--~g~~yv~~~~g~ 459 (488)
T cd00216 436 SGIQATP--MTYEV--NGKQYVGVMVGG 459 (488)
T ss_pred CCceEcC--EEEEe--CCEEEEEEEecC
Confidence 223 44566 799999987763
No 117
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.78 E-value=0.57 Score=46.23 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=60.0
Q ss_pred cceEEeCCCCeEEEEcCCCccCccc----------eeEe---e--eecCCCceEEEEcCCCCeEEEeecCCCCC-ceeEE
Q 048181 143 DGLDVDQGTGVVYFTDASGVYDFRT----------IVKL---N--ITNDSTGRLLSYNPRSSQVTVLLRNLTGP-AGVAI 206 (310)
Q Consensus 143 ndvavd~~~G~lyvtd~~~~~~~~~----------~~~~---~--~~~~~~G~l~~~d~~~g~~~~~~~~l~~p-nGIa~ 206 (310)
..+++||+.|.+|+........... +... . ....+.|.|.-+|+.+|++.-... ...| .+-.+
T Consensus 390 ~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~-~~~p~~~~~l 468 (527)
T TIGR03075 390 QPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHK-EDFPLWGGVL 468 (527)
T ss_pred CCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEec-CCCCCCCcce
Confidence 4589999888888865442111100 0000 0 011246889999999997643222 2222 22223
Q ss_pred ccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC----CCCceeeeCCCCCCcEEEEEec
Q 048181 207 SVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ----AKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 207 ~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~----g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
.-.|. ||+.-+.++.++.||... |+..- ..++ +.| |.... +|+.||+...
T Consensus 469 ~t~g~-lvf~g~~~G~l~a~D~~T---Ge~lw~~~~g~~~~a~P--~ty~~--~G~qYv~~~~ 523 (527)
T TIGR03075 469 ATAGD-LVFYGTLEGYFKAFDAKT---GEELWKFKTGSGIVGPP--VTYEQ--DGKQYVAVLS 523 (527)
T ss_pred EECCc-EEEEECCCCeEEEEECCC---CCEeEEEeCCCCceecC--EEEEe--CCEEEEEEEe
Confidence 33455 444456678899998653 43221 2232 223 44445 7899988654
No 118
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.087 Score=46.98 Aligned_cols=114 Identities=17% Similarity=0.116 Sum_probs=71.4
Q ss_pred eEEEEcCCCCeEE-Eeec---CCCCCceeEEccCCCEEEEEec----CCCeEEEEEecCCCCCceeeecCCCCCceeeeC
Q 048181 180 RLLSYNPRSSQVT-VLLR---NLTGPAGVAISVDSSFLLVSEF----TGNRTLKYWLRGPRANSFDIINFQAKPHNIKRN 251 (310)
Q Consensus 180 ~l~~~d~~~g~~~-~~~~---~l~~pnGIa~~~dg~~Lyv~d~----~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d 251 (310)
..+.+|+++.+.- ++.. .-.+--|+ ||+||++||.+|. ..+.|-.|+.........|....--.|.-+.+-
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGv-fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm 170 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGV-FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM 170 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccc-cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEe
Confidence 3456676644322 2211 11234565 9999999999875 456677887653211111221111149999999
Q ss_pred CCCCCcEEEEEecCC--CCC--------CCCceeeEEEC-CCCcEEEEEecCCCcc
Q 048181 252 PGLLQTFWEAAIITR--QPA--------GTPVPIGQRIS-AFGAVLDTISFEAQYS 296 (310)
Q Consensus 252 ~~~dG~l~va~~~~~--~~~--------~~~~~~v~~~~-~~G~~~~~~~~p~~~~ 296 (310)
. ||.+.|...++. +|. -..+|.++-+| .+|++++...+|+..+
T Consensus 171 ~--DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~ 224 (366)
T COG3490 171 A--DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR 224 (366)
T ss_pred c--CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence 9 999888777742 221 14567888888 7999999999996543
No 119
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.68 E-value=0.47 Score=44.41 Aligned_cols=197 Identities=13% Similarity=0.093 Sum_probs=101.9
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee-eEEEecCCCeEEEEeCCCcEEE
Q 048181 41 FEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF-GLALHYATRQLYIADAYSGLLV 119 (310)
Q Consensus 41 ~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~-Gla~d~~~g~LyVad~~~gi~~ 119 (310)
.+.+|. +|+...+|+|+.++++++...+... +. ....... ++.. .+|+||+.+....++.
T Consensus 65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~--------~~--------~~~~~~~~~~~~--~~G~i~~g~~~g~~y~ 125 (370)
T COG1520 65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYP--------LL--------GAVAQLSGPILG--SDGKIYVGSWDGKLYA 125 (370)
T ss_pred EeeCCe-EEEecCCCcEEEEeCCCCcEEeccc--------Cc--------CcceeccCceEE--eCCeEEEecccceEEE
Confidence 455666 4555678889999988665444211 00 0011122 3444 3899999877656999
Q ss_pred EeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeec---
Q 048181 120 VGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR--- 196 (310)
Q Consensus 120 id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~--- 196 (310)
+|.++|+.... ....+. ........+. ++.+|+... +|.++.++.++|+..-..+
T Consensus 126 ld~~~G~~~W~-~~~~~~-~~~~~~~v~~--~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~ 183 (370)
T COG1520 126 LDASTGTLVWS-RNVGGS-PYYASPPVVG--DGTVYVGTD------------------DGHLYALNADTGTLKWTYETPA 183 (370)
T ss_pred EECCCCcEEEE-EecCCC-eEEecCcEEc--CcEEEEecC------------------CCeEEEEEccCCcEEEEEecCC
Confidence 99966654322 222221 2223333333 588888741 2567788877775432211
Q ss_pred --CCCCCceeEEccCCCEEEEEecC-CCeEEEEEec-CCCCCceee---ec------CCCCCceeeeCCCCCCcEEEEEe
Q 048181 197 --NLTGPAGVAISVDSSFLLVSEFT-GNRTLKYWLR-GPRANSFDI---IN------FQAKPHNIKRNPGLLQTFWEAAI 263 (310)
Q Consensus 197 --~l~~pnGIa~~~dg~~Lyv~d~~-~~~I~~~~~~-~~~~g~~~~---~~------l~g~Pdgl~~d~~~dG~l~va~~ 263 (310)
.+......+ ..++ .+|+.... +.+++.++.. |......+. .+ .+. -++-.+.. ++.+|...+
T Consensus 184 ~~~~~~~~~~~-~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~-~~~~~v~v--~~~~~~~~~ 258 (370)
T COG1520 184 PLSLSIYGSPA-IASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPA-VDGGPVYV--DGGVYAGSY 258 (370)
T ss_pred ccccccccCce-eecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCccccccccc-ccCceEEE--CCcEEEEec
Confidence 222223333 3444 47776554 4477777773 322112111 01 111 12222333 445555555
Q ss_pred cCCCCCCCCceeeEEEC-CCCcEEEEEecC
Q 048181 264 ITRQPAGTPVPIGQRIS-AFGAVLDTISFE 292 (310)
Q Consensus 264 ~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p 292 (310)
.. .+.+++ ++|+.+-..+.+
T Consensus 259 ~g---------~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 259 GG---------KLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CC---------eEEEEEcCCCceEEEEecc
Confidence 53 466666 458877777775
No 120
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.67 E-value=0.29 Score=48.58 Aligned_cols=191 Identities=9% Similarity=-0.002 Sum_probs=104.7
Q ss_pred cceEEEeCCCCCCCcceEEEccCCCEEEEEeCCC----eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee
Q 048181 22 PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADG----RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF 97 (310)
Q Consensus 22 ~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g----~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~ 97 (310)
....++.+++ .|..++++++|..+|+...|. .+..++....-..+.+ .+.
T Consensus 226 eV~~qV~Vdg---npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf-----------------------ni~ 279 (635)
T PRK02888 226 EVAWQVMVDG---NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF-----------------------NIA 279 (635)
T ss_pred eEEEEEEeCC---CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE-----------------------chH
Confidence 3456678886 689999999999888886432 2333332211111110 011
Q ss_pred e-EEEecCCCeEEEEeCCCcEEEEeCCC----C-eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181 98 G-LALHYATRQLYIADAYSGLLVVGPNG----R-LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 98 G-la~d~~~g~LyVad~~~gi~~id~~~----~-~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~ 171 (310)
+ .++.......||. .+.|.+||..+ + .+.... .-+ ++|.+++++|++..+|++....
T Consensus 280 ~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI--PVG---KsPHGV~vSPDGkylyVanklS---------- 342 (635)
T PRK02888 280 RIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV--PVP---KNPHGVNTSPDGKYFIANGKLS---------- 342 (635)
T ss_pred HHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE--ECC---CCccceEECCCCCEEEEeCCCC----------
Confidence 1 1121123345552 34588898776 2 222111 112 5789999999755688887532
Q ss_pred eeecCCCceEEEEcCCCCe------------EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC---CCCc-
Q 048181 172 NITNDSTGRLLSYNPRSSQ------------VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP---RANS- 235 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~------------~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~---~~g~- 235 (310)
..+..+|..+.+ +..-..--..|--.+|+++|+ .|++-.-..+|.+++++.. ..|.
T Consensus 343 -------~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~ 414 (635)
T PRK02888 343 -------PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEK 414 (635)
T ss_pred -------CcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhcccc
Confidence 233344432211 111111124788999999997 9999999999999987631 0111
Q ss_pred -eee-ecCC--C------CCceeeeCCCCCCcEEEEEecC
Q 048181 236 -FDI-INFQ--A------KPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 236 -~~~-~~l~--g------~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
..+ ..++ - .+.|=+.++ ||...++..-.
T Consensus 415 ~~~v~~k~dV~y~pgh~~~~~g~t~~~--dgk~l~~~nk~ 452 (635)
T PRK02888 415 VDPIVQKLDVHYQPGHNHASMGETKEA--DGKWLVSLNKF 452 (635)
T ss_pred CCcceecccCCCccceeeecCCCcCCC--CCCEEEEcccc
Confidence 112 2221 1 234444477 99888887654
No 121
>PTZ00421 coronin; Provisional
Probab=96.65 E-value=0.75 Score=44.98 Aligned_cols=160 Identities=10% Similarity=0.042 Sum_probs=87.2
Q ss_pred CcceEEEccCC-CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181 35 GGESIAFEPVG-GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA 113 (310)
Q Consensus 35 ~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~ 113 (310)
....++|.|++ +++++...++.|.-++...+...... .........+++. .+|.++++-.
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l------------------~~h~~~V~sla~s-pdG~lLatgs 187 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI------------------KCHSDQITSLEWN-LDGSLLCTTS 187 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE------------------cCCCCceEEEEEE-CCCCEEEEec
Confidence 45678999875 67778788899988887643321110 0112234678897 6787776654
Q ss_pred CCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe--
Q 048181 114 YSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-- 190 (310)
Q Consensus 114 ~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-- 190 (310)
..+ |..+|+.+++...-. .+..-.....+...++ +..++|-... ...++.+..+|..+..
T Consensus 188 ~Dg~IrIwD~rsg~~v~tl---~~H~~~~~~~~~w~~~-~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 188 KDKKLNIIDPRDGTIVSSV---EAHASAKSQRCLWAKR-KDLIITLGCS-------------KSQQRQIMLWDTRKMASP 250 (493)
T ss_pred CCCEEEEEECCCCcEEEEE---ecCCCCcceEEEEcCC-CCeEEEEecC-------------CCCCCeEEEEeCCCCCCc
Confidence 444 777898776532111 1111011123444553 3344432110 1124667777765332
Q ss_pred EEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 191 VTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 191 ~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
..... +......-..+++|++.||++-...+.|+.|++..
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 11111 11111223468899998888876788888888864
No 122
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.62 E-value=0.021 Score=55.17 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=75.6
Q ss_pred CCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC-------eEEEee--------cC--
Q 048181 135 EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS-------QVTVLL--------RN-- 197 (310)
Q Consensus 135 ~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g-------~~~~~~--------~~-- 197 (310)
...++-+|.++++.|..|.+|++.+.+.-...+-. ..-....-|.|+||-+.++ +.+.+. +.
T Consensus 412 GAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~a-Npr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~ 490 (616)
T COG3211 412 GATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAA-NPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA 490 (616)
T ss_pred CCccccCccceeecCCcceEEEEeCCCCccccccC-CCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc
Confidence 34578899999999988899999887541100000 0001123477888876554 333322 11
Q ss_pred --------CCCCceeEEccCCCEEEEEecCCC--------eEEEEEecCCCCCceee-ecCC--CCCceeeeCCCCCC-c
Q 048181 198 --------LTGPAGVAISVDSSFLLVSEFTGN--------RTLKYWLRGPRANSFDI-INFQ--AKPHNIKRNPGLLQ-T 257 (310)
Q Consensus 198 --------l~~pnGIa~~~dg~~Lyv~d~~~~--------~I~~~~~~~~~~g~~~~-~~l~--g~Pdgl~~d~~~dG-~ 257 (310)
+..|.+|+|++.|+ ||++.-... -++.+...+++.++++. ...| .--.|.++.+ || .
T Consensus 491 ~~~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~Fsp--D~~T 567 (616)
T COG3211 491 SANINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSP--DGKT 567 (616)
T ss_pred ccCcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCC--CCce
Confidence 45599999999998 777654332 13333333444454443 1112 2346789999 88 6
Q ss_pred EEEEEecCC
Q 048181 258 FWEAAIITR 266 (310)
Q Consensus 258 l~va~~~~~ 266 (310)
++|+..-.+
T Consensus 568 lFV~vQHPG 576 (616)
T COG3211 568 LFVNVQHPG 576 (616)
T ss_pred EEEEecCCC
Confidence 899876553
No 123
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.57 E-value=0.76 Score=44.05 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=59.1
Q ss_pred EEecCCCe----EEEEeCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 100 ALHYATRQ----LYIADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 100 a~d~~~g~----LyVad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
++. ++|+ +|++... ..|+.++.++++.+.+.. ..+.. -..+++|++..|.++-....
T Consensus 191 ~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~----~~p~wSPDG~~Laf~s~~~g----------- 253 (428)
T PRK01029 191 TWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQ----LMPTFSPRKKLLAFISDRYG----------- 253 (428)
T ss_pred eEc-cCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCc----cceEECCCCCEEEEEECCCC-----------
Confidence 565 4543 2455433 349999999887766543 33321 14678895336665532110
Q ss_pred ecCCCceEEEEcCCC---CeEEEeecC-CCCCceeEEccCCCEEEEEec--CCCeEEEEEecC
Q 048181 174 TNDSTGRLLSYNPRS---SQVTVLLRN-LTGPAGVAISVDSSFLLVSEF--TGNRTLKYWLRG 230 (310)
Q Consensus 174 ~~~~~G~l~~~d~~~---g~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~--~~~~I~~~~~~~ 230 (310)
.++-.+..++..+ ++.+.+... .......+|+|||+.|+++.. ...+||++++++
T Consensus 254 --~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~ 314 (428)
T PRK01029 254 --NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP 314 (428)
T ss_pred --CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc
Confidence 0111122133222 333333332 223356799999997776543 334788888753
No 124
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.53 E-value=0.6 Score=44.71 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=84.7
Q ss_pred EEecCCCeEEEEeCCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEE-cCCCccCccceeEeeeec
Q 048181 100 ALHYATRQLYIADAYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFT-DASGVYDFRTIVKLNITN 175 (310)
Q Consensus 100 a~d~~~g~LyVad~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvt-d~~~~~~~~~~~~~~~~~ 175 (310)
++.+...+|.++.... .|+.+|..++....+ +...+. +. .=.++|++-.|+|+ |...
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L-t~~~gi--~~--~Ps~spdG~~ivf~Sdr~G-------------- 304 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL-TNGFGI--NT--SPSWSPDGSKIVFTSDRGG-------------- 304 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCcceec-ccCCcc--cc--CccCCCCCCEEEEEeCCCC--------------
Confidence 3432233454443332 499999988765543 222221 10 22345543455554 4322
Q ss_pred CCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCe--EEEEEecCCCCCceee--ecCCCCCceeeeC
Q 048181 176 DSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNR--TLKYWLRGPRANSFDI--INFQAKPHNIKRN 251 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~--I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d 251 (310)
.-+||+++++++.++.+........--.++|||++|.+.....+. |..+++... +..+. ..... ..-...
T Consensus 305 --~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~--~~~~~lt~~~~~--e~ps~~ 378 (425)
T COG0823 305 --RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG--GKIRILTSTYLN--ESPSWA 378 (425)
T ss_pred --CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC--CcEEEccccccC--CCCCcC
Confidence 237999999877776666555555577899999977776644444 555555321 11222 11110 111233
Q ss_pred CCCCCcE--EEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCc
Q 048181 252 PGLLQTF--WEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQY 295 (310)
Q Consensus 252 ~~~dG~l--~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~ 295 (310)
+ +|.. |.+.... ++.+.-++-+|+....+....++
T Consensus 379 ~--ng~~i~~~s~~~~-------~~~l~~~s~~g~~~~~~~~~~~~ 415 (425)
T COG0823 379 P--NGRMIMFSSGQGG-------GSVLSLVSLDGRVSRPLPLADGD 415 (425)
T ss_pred C--CCceEEEeccCCC-------CceEEEeeccceeEEEEeccCcc
Confidence 3 4433 2332222 23556667788888777776553
No 125
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.52 E-value=0.18 Score=52.89 Aligned_cols=189 Identities=14% Similarity=0.208 Sum_probs=120.9
Q ss_pred CcceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181 35 GGESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA 113 (310)
Q Consensus 35 ~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~ 113 (310)
....+.++. ++.+||.|.....|.+....+...... | ....-.|.|+++|--.+++|-+|.
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~----------~--------~~g~~~~~~lavD~~~~~~y~tDe 499 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECEL----------C--------GDGLCIPEGLAVDWIGDNIYWTDE 499 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCccceE----------e--------ccCccccCcEEEEeccCCceeccc
Confidence 444455553 457899999999999887775432110 1 123346779999866789999998
Q ss_pred CCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC-eE
Q 048181 114 YSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS-QV 191 (310)
Q Consensus 114 ~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g-~~ 191 (310)
... +.+.+.++....++... .+..|..++++|..|.+|++|... . . ++.|-..+.- ..
T Consensus 500 ~~~~i~v~~~~g~~~~vl~~~----~l~~~r~~~v~p~~g~~~wtd~~~-~--------------~-~i~ra~~dg~~~~ 559 (877)
T KOG1215|consen 500 GNCLIEVADLDGSSRKVLVSK----DLDLPRSIAVDPEKGLMFWTDWGQ-P--------------P-RIERASLDGSERA 559 (877)
T ss_pred CCceeEEEEccCCceeEEEec----CCCCccceeeccccCeeEEecCCC-C--------------c-hhhhhcCCCCCce
Confidence 754 44455454433333322 123567899999889999999864 1 1 2222222211 22
Q ss_pred EEeecCCCCCceeEEccCCCEEEEEecCCC-eEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181 192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGN-RTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITR 266 (310)
Q Consensus 192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~-~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~ 266 (310)
..+..++..|||++++--.+.+|.+|.... .|.+...+|... .... ..++ .|.++++-. ..+|-.++..+
T Consensus 560 ~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r-~~~~~~~~~-~p~~~~~~~---~~iyw~d~~~~ 631 (877)
T KOG1215|consen 560 VLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNR-RVVDSEDLP-HPFGLSVFE---DYIYWTDWSNR 631 (877)
T ss_pred EEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCce-EEeccccCC-CceEEEEec---ceeEEeecccc
Confidence 233345789999999988888999999888 788998887432 1112 3444 588999876 46666666553
No 126
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.49 E-value=0.83 Score=44.56 Aligned_cols=129 Identities=10% Similarity=0.155 Sum_probs=66.8
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEE
Q 048181 39 IAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLL 118 (310)
Q Consensus 39 ia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~ 118 (310)
+++. +|.+ |+...+++++.++...+.+.+..... ... ....... ...|+++. .++++|+.+....|+
T Consensus 57 Pvv~-~g~v-y~~~~~g~l~AlD~~tG~~~W~~~~~-------~~~-~~~~~~~--~~~g~~~~-~~~~V~v~~~~g~v~ 123 (488)
T cd00216 57 PLVV-DGDM-YFTTSHSALFALDAATGKVLWRYDPK-------LPA-DRGCCDV--VNRGVAYW-DPRKVFFGTFDGRLV 123 (488)
T ss_pred CEEE-CCEE-EEeCCCCcEEEEECCCChhhceeCCC-------CCc-ccccccc--ccCCcEEc-cCCeEEEecCCCeEE
Confidence 3443 5564 45555799999998755444432110 000 0000000 11245553 238999987766699
Q ss_pred EEeCCCCeEEEeeccCCCc---cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181 119 VVGPNGRLATQLATGAEGQ---AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT 192 (310)
Q Consensus 119 ~id~~~~~~~~~~~~~~g~---~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~ 192 (310)
.+|.++|+..--.. .... ....-...++. ++.+|+......+ ......|.|+.+|..+|+..
T Consensus 124 AlD~~TG~~~W~~~-~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~---------~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 124 ALDAETGKQVWKFG-NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEF---------FACGVRGALRAYDVETGKLL 188 (488)
T ss_pred EEECCCCCEeeeec-CCCCcCcceEecCCCEEE--CCEEEEecccccc---------ccCCCCcEEEEEECCCCcee
Confidence 99999887542221 1111 01111234555 3788886543211 00123578889998888654
No 127
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.038 Score=47.08 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=43.8
Q ss_pred eeEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeecc--------CCCccccCccceEEeCCCCeEEEEcCC
Q 048181 97 FGLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATG--------AEGQAFHFLDGLDVDQGTGVVYFTDAS 160 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~--------~~g~~~~~pndvavd~~~G~lyvtd~~ 160 (310)
+-|.+ -+|.||.--.. ..|.+|++++|++..+... .+....+-+||+|.+++.+++|+|...
T Consensus 179 NELE~--VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 179 NELEW--VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred cceee--eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 34555 37888854333 4699999999987655321 233456789999999987799999754
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=1.2 Score=45.59 Aligned_cols=200 Identities=15% Similarity=0.180 Sum_probs=108.3
Q ss_pred eeecceEEEeCCCCCCCcceEEE--------ccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccC
Q 048181 19 FSIPTFTKILFPPKAFGGESIAF--------EPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDL 89 (310)
Q Consensus 19 ~~~~~~~~~~~~~~~~~Pegia~--------d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~ 89 (310)
-+-+.++.++-.....-|+.+.. .-+.+.+.+...++.|.++.-+... ..+.
T Consensus 32 gsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL------------------- 92 (933)
T KOG1274|consen 32 GSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTIL------------------- 92 (933)
T ss_pred cCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcccee-------------------
Confidence 34455565554433345555441 1234557777778888888754322 1111
Q ss_pred CCCCCce-eeEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccc
Q 048181 90 GPICRRT-FGLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRT 167 (310)
Q Consensus 90 ~~~~~~P-~Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~ 167 (310)
..+.-| .-++++ .+|...++-.. ..|-.++..+..........++ + .-.+..+|+ |++..+-+
T Consensus 93 -~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-p---Vl~l~~~p~-~~fLAvss-------- 157 (933)
T KOG1274|consen 93 -ARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-P---VLQLSYDPK-GNFLAVSS-------- 157 (933)
T ss_pred -eeeeccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecccCC-c---eeeeeEcCC-CCEEEEEe--------
Confidence 112223 367886 67777665333 3466666544332222333222 1 236889995 77765543
Q ss_pred eeEeeeecCCCceEEEEcCCCCeEEEeecCCCC---------CceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee
Q 048181 168 IVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG---------PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI 238 (310)
Q Consensus 168 ~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~---------pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~ 238 (310)
.+|.|+.||.+++.+...+.++.. =+=++|+|+|.++.+. ...+.|..|+..+-. -...+
T Consensus 158 ---------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we-~~f~L 226 (933)
T KOG1274|consen 158 ---------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWE-LQFKL 226 (933)
T ss_pred ---------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCce-eheee
Confidence 258888888877766554443321 1457899997766554 457788888876421 11112
Q ss_pred -ecC-CCCCceeeeCCCCCCcEEEEEecC
Q 048181 239 -INF-QAKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 239 -~~l-~g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
... ...-.-+.+++ .|.+..|..-.
T Consensus 227 r~~~~ss~~~~~~wsP--nG~YiAAs~~~ 253 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSP--NGKYIAASTLD 253 (933)
T ss_pred cccccccceEEEEEcC--CCcEEeeeccC
Confidence 121 11134477788 77666554443
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.40 E-value=0.68 Score=47.21 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=87.7
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA 113 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~ 113 (310)
.|-..|+||++|..+++...++.|.+++.....+.- +........-.+++.+ .+.+..+..
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-----------------~ti~~~g~~v~~ia~~--s~~f~~~s~ 74 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-----------------ETIDISGELVSSIACY--SNHFLTGSE 74 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-----------------chhhccCceeEEEeec--ccceEEeec
Confidence 456789999999988888888888888654221100 0000011123466663 445544544
Q ss_pred CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181 114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV 193 (310)
Q Consensus 114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~ 193 (310)
.+-|.++....++...+...+. ...++++++. +|...+.-+.. -.|-.++.++...+.
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rft----lp~r~~~v~g-~g~~iaagsdD-----------------~~vK~~~~~D~s~~~ 132 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFT----LPIRDLAVSG-SGKMIAAGSDD-----------------TAVKLLNLDDSSQEK 132 (933)
T ss_pred cceEEEeeCCCCCccceeeeee----ccceEEEEec-CCcEEEeecCc-----------------eeEEEEeccccchhe
Confidence 4446666655544433332221 1136889998 47665544332 123333333333333
Q ss_pred eecCCCCC-ceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 194 LLRNLTGP-AGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 194 ~~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
...+...| -+|.++|.++ ++++.+.++.|+.+++..
T Consensus 133 ~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred eecccCCceeeeeEcCCCC-EEEEEecCceEEEEEccc
Confidence 44455555 4899999998 555666788999998864
No 130
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.30 E-value=0.066 Score=51.82 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=77.6
Q ss_pred eeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181 97 FGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND 176 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~ 176 (310)
..|.+| ..|+|||+ +..|+++||..++++-.+...... ...|.+..|- .|++||....
T Consensus 168 ~aLv~D-~~g~lWvg-T~dGL~~fd~~~gkalql~s~~~d---k~I~al~~d~-qg~LWVGTdq---------------- 225 (671)
T COG3292 168 VALVFD-ANGRLWVG-TPDGLSYFDAGRGKALQLASPPLD---KAINALIADV-QGRLWVGTDQ---------------- 225 (671)
T ss_pred eeeeee-ccCcEEEe-cCCcceEEccccceEEEcCCCcch---hhHHHHHHHh-cCcEEEEecc----------------
Confidence 357787 78999987 455899999988876554332111 4467888888 5999997543
Q ss_pred CCceEEEEcCCCCeEEEeecCCCCCc----eeEEccCCCEEEEEecCCCeEEEEEecCCCCCce--eeecCC--CCCcee
Q 048181 177 STGRLLSYNPRSSQVTVLLRNLTGPA----GVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF--DIINFQ--AKPHNI 248 (310)
Q Consensus 177 ~~G~l~~~d~~~g~~~~~~~~l~~pn----GIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~--~~~~l~--g~Pdgl 248 (310)
| ++++++.+.+..-. +...|. -+.-|.+|. +|+.-. ++ ++|+...- .+.. .....+ .....+
T Consensus 226 --G-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~-lWiGTe-nG-l~r~~l~r--q~Lq~~~~~~~l~~S~vnsL 295 (671)
T COG3292 226 --G-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE-LWIGTE-NG-LWRTRLPR--QGLQIPLSKMHLGVSTVNSL 295 (671)
T ss_pred --c-eEEEchhhcccccc--CCCCcchheeeeecccCCC-EEEeec-cc-ceeEecCC--CCccccccccCCccccccce
Confidence 2 66666553222221 222333 233345564 666532 22 33343321 1111 111111 124678
Q ss_pred eeCCCCCCcEEEEEecC
Q 048181 249 KRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 249 ~~d~~~dG~l~va~~~~ 265 (310)
..|. +|+||+.....
T Consensus 296 ~~D~--dGsLWv~t~~g 310 (671)
T COG3292 296 WLDT--DGSLWVGTYGG 310 (671)
T ss_pred eecc--CCCEeeeccCc
Confidence 9999 99999998874
No 131
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.29 E-value=0.52 Score=44.85 Aligned_cols=110 Identities=9% Similarity=0.061 Sum_probs=66.1
Q ss_pred CCCCCCceeeEEEecCCCe-EEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccc
Q 048181 89 LGPICRRTFGLALHYATRQ-LYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRT 167 (310)
Q Consensus 89 ~~~~~~~P~Gla~d~~~g~-LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~ 167 (310)
.+...++--.+.++ ++|+ +.+++....||.+|.++|..+.+-.+..+ -..|.++++ +++.+.=- |.. .
T Consensus 397 ~e~~lg~I~av~vs-~dGK~~vvaNdr~el~vididngnv~~idkS~~~----lItdf~~~~-nsr~iAYa----fP~-g 465 (668)
T COG4946 397 IEKDLGNIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG----LITDFDWHP-NSRWIAYA----FPE-G 465 (668)
T ss_pred eeCCccceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCeeEecccccc----eeEEEEEcC-CceeEEEe----cCc-c
Confidence 34455666678887 5665 66676666799999999887765433222 245888888 36543211 110 0
Q ss_pred eeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEe
Q 048181 168 IVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSE 217 (310)
Q Consensus 168 ~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d 217 (310)
+. ...+-.+|..++++-.+.....+--.-||+|||++||+-.
T Consensus 466 y~--------tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 466 YY--------TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ee--------eeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 11 1234555665555544444434445678999999999854
No 132
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.22 E-value=0.85 Score=40.84 Aligned_cols=232 Identities=10% Similarity=0.043 Sum_probs=127.4
Q ss_pred EeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEee-----------eecCCCCccccCCCcc----ccCC-
Q 048181 27 ILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFA-----------FTTPTRSKAVCDGTTN----LDLG- 90 (310)
Q Consensus 27 ~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~-----------~~~~~~~~~~~~g~~~----~~~~- 90 (310)
..|.|.+..-..+-|.+|.+.+++...+|++..++.-...++.+ .-+|......|+|-.. ..+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 34577788889999999999899999999999888653322211 1233344455654210 0000
Q ss_pred -------C-------CCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEE
Q 048181 91 -------P-------ICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYF 156 (310)
Q Consensus 91 -------~-------~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyv 156 (310)
+ ..++-.-..+ .+++.|+-+.........|.++++..... .|. ..-.-.+.+.|.+++.|+
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f-~dD~~ilT~SGD~TCalWDie~g~~~~~f---~GH-~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRF-LDDNHILTGSGDMTCALWDIETGQQTQVF---HGH-TGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred ccccccceeeeeecCccceeEEEEE-cCCCceEecCCCceEEEEEcccceEEEEe---cCC-cccEEEEecCCCCCCeEE
Confidence 0 0001111122 13343432222223455566665543322 221 112235667774588898
Q ss_pred EcCCCccCccceeEeeeecCCCceEEEEcCCCCe-EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCc
Q 048181 157 TDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANS 235 (310)
Q Consensus 157 td~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~ 235 (310)
+-... ..-+.+|...+. ++.+...-.--|.+.|.|+|. -|++-+.....+-||+... .+
T Consensus 204 Sg~cD-----------------~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD--~~ 263 (343)
T KOG0286|consen 204 SGGCD-----------------KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRAD--QE 263 (343)
T ss_pred ecccc-----------------cceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCC--cE
Confidence 86542 223333433333 233333334459999999996 6888888888888988643 12
Q ss_pred eee---ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCC
Q 048181 236 FDI---INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEA 293 (310)
Q Consensus 236 ~~~---~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~ 293 (310)
..+ ......-..+++.. .|+|..+.+... .+..+| -.|+.+..+.-.+
T Consensus 264 ~a~ys~~~~~~gitSv~FS~--SGRlLfagy~d~--------~c~vWDtlk~e~vg~L~GHe 315 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSK--SGRLLFAGYDDF--------TCNVWDTLKGERVGVLAGHE 315 (343)
T ss_pred EeeeccCcccCCceeEEEcc--cccEEEeeecCC--------ceeEeeccccceEEEeeccC
Confidence 222 23333467799999 999888766542 233444 2455555555444
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.20 E-value=0.41 Score=48.26 Aligned_cols=187 Identities=13% Similarity=0.155 Sum_probs=105.2
Q ss_pred CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181 35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY 114 (310)
Q Consensus 35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~ 114 (310)
....++++.=||..+.+..+|.|-+++...+...-.+ |. .....+.-.|+++| ..+++.|+...
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf-----------~~----~~ah~~~V~gla~D-~~n~~~vsa~~ 513 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF-----------GD----SPAHKGEVTGLAVD-GTNRLLVSAGA 513 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc-----------cc----CccccCceeEEEec-CCCceEEEccC
Confidence 3456777777998999999999999998876543111 00 01122344699998 78889888777
Q ss_pred CcEEEE-eCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE-
Q 048181 115 SGLLVV-GPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT- 192 (310)
Q Consensus 115 ~gi~~i-d~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~- 192 (310)
.|++++ |.+... +.....- -..++.+.-... -.++..- -.+=.|..+|..+.++.
T Consensus 514 ~Gilkfw~f~~k~---l~~~l~l--~~~~~~iv~hr~-s~l~a~~-----------------~ddf~I~vvD~~t~kvvR 570 (910)
T KOG1539|consen 514 DGILKFWDFKKKV---LKKSLRL--GSSITGIVYHRV-SDLLAIA-----------------LDDFSIRVVDVVTRKVVR 570 (910)
T ss_pred cceEEEEecCCcc---eeeeecc--CCCcceeeeeeh-hhhhhhh-----------------cCceeEEEEEchhhhhhH
Confidence 787665 544322 1111110 001222222221 1111110 01224666776544332
Q ss_pred EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181 193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
.+...-..-|.++|||||++| ++.+..+.|+.+|+-.. .......+..-+-.+.+.+ +|.+..+.+-.
T Consensus 571 ~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlpt~--~lID~~~vd~~~~sls~SP--ngD~LAT~Hvd 638 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLPTG--TLIDGLLVDSPCTSLSFSP--NGDFLATVHVD 638 (910)
T ss_pred HhhccccceeeeEeCCCCcEE-EEeecCCcEEEEeccCc--ceeeeEecCCcceeeEECC--CCCEEEEEEec
Confidence 223334466999999999965 45556778888887421 2222122333466788888 88777665544
No 134
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.16 E-value=0.59 Score=41.18 Aligned_cols=188 Identities=10% Similarity=0.034 Sum_probs=103.7
Q ss_pred EeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC
Q 048181 27 ILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR 106 (310)
Q Consensus 27 ~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g 106 (310)
-++.+....-.+++|..+|.-+.....++.+..++.+.....+. ....| ....---++++++..
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~--------~~~~g--------h~~svdql~w~~~~~ 77 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE--------LVYRG--------HTDSVDQLCWDPKHP 77 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh--------hcccC--------CCcchhhheeCCCCC
Confidence 34455666788999999998777777777776666553211100 00000 011112366776655
Q ss_pred eEEEE-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181 107 QLYIA-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN 185 (310)
Q Consensus 107 ~LyVa-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d 185 (310)
.++++ .++..|..+|...++....... .++. +-++..|+++.+.+.+. +-.|.-+|
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~~~i~~-~~en----i~i~wsp~g~~~~~~~k------------------dD~it~id 134 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCTARIET-KGEN----INITWSPDGEYIAVGNK------------------DDRITFID 134 (313)
T ss_pred cceEEecCCceEEEEEeccCcEEEEeec-cCcc----eEEEEcCCCCEEEEecC------------------cccEEEEE
Confidence 56554 4445577788765543321111 1111 24556664444444432 23566677
Q ss_pred CCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCC---ceeeeCCCCCCcEEEE
Q 048181 186 PRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKP---HNIKRNPGLLQTFWEA 261 (310)
Q Consensus 186 ~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~P---dgl~~d~~~dG~l~va 261 (310)
..+.++..-.+-....|-|+++-+++ ||+..++.++|-.+.+- .++. ..+...| -.|.+|+ +|..+..
T Consensus 135 ~r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp-----sLkpv~si~AH~snCicI~f~p--~GryfA~ 206 (313)
T KOG1407|consen 135 ARTYKIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYP-----SLKPVQSIKAHPSNCICIEFDP--DGRYFAT 206 (313)
T ss_pred ecccceeehhcccceeeeeeecCCCC-EEEEecCCceEEEEecc-----ccccccccccCCcceEEEEECC--CCceEee
Confidence 65444433333345679999997765 88888888987766543 1221 2333233 3477888 8876654
No 135
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.14 E-value=0.42 Score=45.79 Aligned_cols=209 Identities=12% Similarity=0.111 Sum_probs=113.0
Q ss_pred ecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181 21 IPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA 100 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla 100 (310)
+|-..++.+++.-.-...+++|+.|..++++..+-.|.-++-.|--..+.. ......|+ +..-+.+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~---fr~l~P~E----------~h~i~sl~ 221 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS---FRQLQPCE----------THQINSLQ 221 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh---hhccCccc----------ccccceee
Confidence 455566777776667778999999998999998888988887652111100 00011222 22345788
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccC-------CC-ccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 101 LHYATRQLYIADAYSGLLVVGPNGRLATQLATGA-------EG-QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 101 ~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~-------~g-~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
+....+.|+|.........+|.++-++..+...- .. .+....+.....|.+-..|.|
T Consensus 222 ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT--------------- 286 (641)
T KOG0772|consen 222 YSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLT--------------- 286 (641)
T ss_pred ecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEE---------------
Confidence 8644555666655566788898875544332210 00 011122233333332223333
Q ss_pred eecCCCce--EEEEcCCCCeEEEeec----CC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC-ceee--ecCC
Q 048181 173 ITNDSTGR--LLSYNPRSSQVTVLLR----NL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN-SFDI--INFQ 242 (310)
Q Consensus 173 ~~~~~~G~--l~~~d~~~g~~~~~~~----~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g-~~~~--~~l~ 242 (310)
...+|. +|-++....+.+++.. +. ..|.--+|++||+ ++.+-...+.|..++..+.... ...+ +..+
T Consensus 287 --~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 287 --CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP 363 (641)
T ss_pred --ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCC
Confidence 233444 4444332223333322 11 2467889999998 5777777787776665221111 1112 4444
Q ss_pred C-CCceeeeCCCCCCcEEEEE
Q 048181 243 A-KPHNIKRNPGLLQTFWEAA 262 (310)
Q Consensus 243 g-~Pdgl~~d~~~dG~l~va~ 262 (310)
+ .-..|.+.. ||++..+-
T Consensus 364 g~~Itsi~FS~--dg~~LlSR 382 (641)
T KOG0772|consen 364 GQDITSISFSY--DGNYLLSR 382 (641)
T ss_pred CCceeEEEecc--ccchhhhc
Confidence 2 345688888 88877764
No 136
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.13 E-value=0.85 Score=40.01 Aligned_cols=142 Identities=14% Similarity=0.106 Sum_probs=82.9
Q ss_pred CEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCC
Q 048181 46 GAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN 123 (310)
Q Consensus 46 ~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~ 123 (310)
-++.+...+..|+-+....+. .++ ....++-+.|.+. ++++.+++.....|..+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi--------------------qh~dsqVNrLeiT-pdk~~LAaa~~qhvRlyD~~ 69 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI--------------------QHPDSQVNRLEIT-PDKKDLAAAGNQHVRLYDLN 69 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE--------------------ecCccceeeEEEc-CCcchhhhccCCeeEEEEcc
Confidence 345556678888877766443 222 1334566778885 66766665555558888887
Q ss_pred CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCce
Q 048181 124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAG 203 (310)
Q Consensus 124 ~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnG 203 (310)
++.-.++++ +++. -+....+.+.. +|+-..|.+ .+|.+-.+|..+-......+.-.--|.
T Consensus 70 S~np~Pv~t-~e~h-~kNVtaVgF~~-dgrWMyTgs-----------------eDgt~kIWdlR~~~~qR~~~~~spVn~ 129 (311)
T KOG0315|consen 70 SNNPNPVAT-FEGH-TKNVTAVGFQC-DGRWMYTGS-----------------EDGTVKIWDLRSLSCQRNYQHNSPVNT 129 (311)
T ss_pred CCCCCceeE-Eecc-CCceEEEEEee-cCeEEEecC-----------------CCceEEEEeccCcccchhccCCCCcce
Confidence 765434332 3331 12223455555 366555543 246666666554332222222233499
Q ss_pred eEEccCCCEEEEEecCCCeEEEEEec
Q 048181 204 VAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 204 Ia~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
|+++|....|+++|. ++.|+..|+.
T Consensus 130 vvlhpnQteLis~dq-sg~irvWDl~ 154 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQ-SGNIRVWDLG 154 (311)
T ss_pred EEecCCcceEEeecC-CCcEEEEEcc
Confidence 999999888887774 5667877774
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.09 E-value=1.2 Score=44.03 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=85.5
Q ss_pred ceEEEccCCCEEEEEe-CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe-CC
Q 048181 37 ESIAFEPVGGAFYTGV-ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD-AY 114 (310)
Q Consensus 37 egia~d~~G~l~~~d~-~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad-~~ 114 (310)
..-++.|+|+++-.+. ..=+|+|+.++..++.....-. ........-.-..+| +..++++. ..
T Consensus 386 s~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~-------------~~~~~~a~~i~ftid--~~k~~~~s~~~ 450 (691)
T KOG2048|consen 386 SCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDV-------------PLALLDASAISFTID--KNKLFLVSKNI 450 (691)
T ss_pred eeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccc-------------hhhhccceeeEEEec--CceEEEEeccc
Confidence 3456678999766654 5678999999864433221000 000001111233444 34444443 22
Q ss_pred CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEE-EEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181 115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVY-FTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV 193 (310)
Q Consensus 115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~ly-vtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~ 193 (310)
..+..++.++.....+............+-++++++ |+-+ +.+ ..|.++.|+.++++.+.
T Consensus 451 ~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd-G~yiaa~~------------------t~g~I~v~nl~~~~~~~ 511 (691)
T KOG2048|consen 451 FSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD-GNYIAAIS------------------TRGQIFVYNLETLESHL 511 (691)
T ss_pred ceeEEEEecCcchhhhhccccccCCCcceeEEEcCC-CCEEEEEe------------------ccceEEEEEcccceeec
Confidence 346666665543322222111112344567889985 5533 333 23779999988887776
Q ss_pred eecCCCCC-ceeEEcc-CCCEEEEEecCCCeEEEEEecCC
Q 048181 194 LLRNLTGP-AGVAISV-DSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 194 ~~~~l~~p-nGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
+...+..+ .-++++| +.+.|. ..+.+++|+-|++...
T Consensus 512 l~~rln~~vTa~~~~~~~~~~lv-vats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 512 LKVRLNIDVTAAAFSPFVRNRLV-VATSNNQVFEFDIEAR 550 (691)
T ss_pred chhccCcceeeeeccccccCcEE-EEecCCeEEEEecchh
Confidence 66444432 3455553 344454 4567889999998543
No 138
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.04 E-value=0.98 Score=39.96 Aligned_cols=108 Identities=18% Similarity=0.247 Sum_probs=61.1
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181 101 LHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR 180 (310)
Q Consensus 101 ~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~ 180 (310)
.|...|-+|+..+....+.+|+.+.. .+......|.-|..| ++++-++.||++-.. |+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP---~i~~g~~sly~a~t~------------------G~ 158 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSP---VIAPGDGSLYAAITA------------------GA 158 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccc---eecCCCceEEEEecc------------------ce
Confidence 34456777877666668889887632 233233444444444 566645999998764 67
Q ss_pred EEEEcCCCCeEEEeec----------CCCCCceeEE-ccCCCEEEEEecCCCeEEEEEecCC
Q 048181 181 LLSYNPRSSQVTVLLR----------NLTGPAGVAI-SVDSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 181 l~~~d~~~g~~~~~~~----------~l~~pnGIa~-~~dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
+.+..++++..+.++. .+.....+.. .-||..+-++++ ...|||+...|+
T Consensus 159 vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~s-G~qvwr~~t~Gp 219 (354)
T KOG4649|consen 159 VLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDES-GRQVWRPATKGP 219 (354)
T ss_pred EEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCC-CcEEEeecCCCc
Confidence 7777776554433321 1111122222 246764444543 477888876554
No 139
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.03 E-value=0.33 Score=46.47 Aligned_cols=212 Identities=12% Similarity=0.134 Sum_probs=117.9
Q ss_pred eecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCC-ccccCCCCCCcee
Q 048181 20 SIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGT-TNLDLGPICRRTF 97 (310)
Q Consensus 20 ~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~P~ 97 (310)
+-+++++|. |..-..-.++.|.+.|+.+++-..+.++.-++.+|.. ..+ |.|. +..++..+-++-.
T Consensus 202 s~~~fr~l~-P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~-----------~KGDQYI~Dm~nTKGHia 269 (641)
T KOG0772|consen 202 SMRSFRQLQ-PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEF-----------SKGDQYIRDMYNTKGHIA 269 (641)
T ss_pred cchhhhccC-cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeee-----------eccchhhhhhhccCCcee
Confidence 334455553 3233456688898888877777777788888888743 222 3333 3444545555554
Q ss_pred eE---EEecCCCeEEEEeCCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181 98 GL---ALHYATRQLYIADAYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 98 Gl---a~d~~~g~LyVad~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~ 171 (310)
.| ++++.+...|++.... +||-++..-.+.+++-....+..-..|.-.+.++ +|.++.+-.
T Consensus 270 ~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc------------ 336 (641)
T KOG0772|consen 270 ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGC------------ 336 (641)
T ss_pred eeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-Ccchhhhcc------------
Confidence 44 4565566666654433 4666654333444443333332223355667787 477754432
Q ss_pred eeecCCCceEEEEcCCCCeEE--Eeec----CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCC-
Q 048181 172 NITNDSTGRLLSYNPRSSQVT--VLLR----NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQA- 243 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~~~--~~~~----~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g- 243 (310)
.+|+|-.++..+..+. .... .-..-..|+||.||+ .+.+-...+.+..+++...+.- +.+ .+|+.
T Consensus 337 -----~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~t~ 409 (641)
T KOG0772|consen 337 -----LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKP-LNVRTGLPTP 409 (641)
T ss_pred -----cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccccccc-hhhhcCCCcc
Confidence 2455655553221111 1111 112347899999998 4567777777777777643211 222 55542
Q ss_pred CC-ceeeeCCCCCCcEEEEEecC
Q 048181 244 KP-HNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 244 ~P-dgl~~d~~~dG~l~va~~~~ 265 (310)
+| .+.++.+ +-.|.++....
T Consensus 410 ~~~tdc~FSP--d~kli~TGtS~ 430 (641)
T KOG0772|consen 410 FPGTDCCFSP--DDKLILTGTSA 430 (641)
T ss_pred CCCCccccCC--CceEEEecccc
Confidence 33 4577888 88888776554
No 140
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.97 E-value=0.03 Score=35.05 Aligned_cols=41 Identities=32% Similarity=0.419 Sum_probs=28.9
Q ss_pred CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe-EEEeecCCCCCceeEEcc
Q 048181 152 GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-VTVLLRNLTGPAGVAISV 208 (310)
Q Consensus 152 G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-~~~~~~~l~~pnGIa~~~ 208 (310)
++||+||.... .++.+.+.+... ..++.+.+..|+|||+++
T Consensus 1 ~~iYWtD~~~~----------------~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQD----------------PSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTT----------------EEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCC----------------cEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 57999998641 256666665443 344567899999999975
No 141
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.86 E-value=0.3 Score=47.53 Aligned_cols=145 Identities=17% Similarity=0.300 Sum_probs=81.9
Q ss_pred cceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181 36 GESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY 114 (310)
Q Consensus 36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~ 114 (310)
-.-+.+|.+|+ ||++..+| ++++++..+ ....+ ++ +....-+-+..| ..|+|||.. .
T Consensus 167 V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~----------------~~dk~I~al~~d-~qg~LWVGT-d 224 (671)
T COG3292 167 VVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SP----------------PLDKAINALIAD-VQGRLWVGT-D 224 (671)
T ss_pred ceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CC----------------cchhhHHHHHHH-hcCcEEEEe-c
Confidence 34577888877 77776544 888887633 22211 00 011122346666 789999974 4
Q ss_pred CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE-
Q 048181 115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV- 193 (310)
Q Consensus 115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~- 193 (310)
.|++..++++.+..-.... -+....+-+.-|. .|.+||..... ++|+......+..
T Consensus 225 qGv~~~e~~G~~~sn~~~~---lp~~~I~ll~qD~-qG~lWiGTenG-------------------l~r~~l~rq~Lq~~ 281 (671)
T COG3292 225 QGVYLQEAEGWRASNWGPM---LPSGNILLLVQDA-QGELWIGTENG-------------------LWRTRLPRQGLQIP 281 (671)
T ss_pred cceEEEchhhccccccCCC---Ccchheeeeeccc-CCCEEEeeccc-------------------ceeEecCCCCcccc
Confidence 5799999887443322211 1222344566677 49999976432 2322221122211
Q ss_pred ---eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181 194 ---LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWL 228 (310)
Q Consensus 194 ---~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~ 228 (310)
...+...-|++..|.||+ ||+... ++|++|..
T Consensus 282 ~~~~~l~~S~vnsL~~D~dGs-LWv~t~--~giv~~~~ 316 (671)
T COG3292 282 LSKMHLGVSTVNSLWLDTDGS-LWVGTY--GGIVRYLT 316 (671)
T ss_pred ccccCCccccccceeeccCCC-Eeeecc--CceEEEec
Confidence 122344558999999997 898754 55677754
No 142
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.77 E-value=1.3 Score=41.24 Aligned_cols=146 Identities=8% Similarity=0.062 Sum_probs=81.1
Q ss_pred eEEEecCCCe-EEEEe--CCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEe-CC-CCeEEEEcCCCccCcccee
Q 048181 98 GLALHYATRQ-LYIAD--AYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVD-QG-TGVVYFTDASGVYDFRTIV 169 (310)
Q Consensus 98 Gla~d~~~g~-LyVad--~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd-~~-~G~lyvtd~~~~~~~~~~~ 169 (310)
.+.+. .+++ +++.- ... .+..+|..++..+.+.......=+.......+. ++ ++.+|+++..
T Consensus 188 ~v~W~-~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~--------- 257 (353)
T PF00930_consen 188 RVGWS-PDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD--------- 257 (353)
T ss_dssp EEEEE-ETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT---------
T ss_pred cceec-CCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC---------
Confidence 45554 4555 77653 222 277788877766555433222122222344432 32 2344444421
Q ss_pred EeeeecCCCceEEEEcCCCCeEEEeecCCCCC-ceeEEccCCCEEEEEecC----CCeEEEEEec-CCCCCceeeecCCC
Q 048181 170 KLNITNDSTGRLLSYNPRSSQVTVLLRNLTGP-AGVAISVDSSFLLVSEFT----GNRTLKYWLR-GPRANSFDIINFQA 243 (310)
Q Consensus 170 ~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~p-nGIa~~~dg~~Lyv~d~~----~~~I~~~~~~-~~~~g~~~~~~l~g 243 (310)
+-..|+.++.+++..+.+..+--.- .=+.++++++.||++-+. ...|++++++ + +..+......
T Consensus 258 -------G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~ 327 (353)
T PF00930_consen 258 -------GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCED 327 (353)
T ss_dssp -------SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTS
T ss_pred -------CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCC
Confidence 2357999998877766555432222 347789999999998775 4579999887 3 3343311112
Q ss_pred CCc-eeeeCCCCCCcEEEEEecC
Q 048181 244 KPH-NIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 244 ~Pd-gl~~d~~~dG~l~va~~~~ 265 (310)
... ...+++ +|+.++-.+.+
T Consensus 328 ~~~~~~~~Sp--dg~y~v~~~s~ 348 (353)
T PF00930_consen 328 GDHYSASFSP--DGKYYVDTYSG 348 (353)
T ss_dssp STTEEEEE-T--TSSEEEEEEES
T ss_pred CCceEEEECC--CCCEEEEEEcC
Confidence 234 788999 99887765543
No 143
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.79 Score=41.08 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=76.1
Q ss_pred ceeeEEEecCCCe-EEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 95 RTFGLALHYATRQ-LYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 95 ~P~Gla~d~~~g~-LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
+-+||++++...+ +.++-.. .--+.+|+++.+.-++.....+.+|. -.-.+++++..||-|+...
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfy--GHGvfs~dG~~LYATEndf----------- 135 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFY--GHGVFSPDGRLLYATENDF----------- 135 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceee--cccccCCCCcEEEeecCCC-----------
Confidence 4456666643333 3333222 12567787765443333333444332 2345777544567776432
Q ss_pred eecCCCceEEEEcCCCCeEEEee---cCCCCCceeEEccCCCEEEEEecC--CC-eEEE--EEecCC---------CCCc
Q 048181 173 ITNDSTGRLLSYNPRSSQVTVLL---RNLTGPAGVAISVDSSFLLVSEFT--GN-RTLK--YWLRGP---------RANS 235 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g~~~~~~---~~l~~pnGIa~~~dg~~Lyv~d~~--~~-~I~~--~~~~~~---------~~g~ 235 (310)
....|-|-.||.. ...+.+. .---.|--+.+.+||++|.++.-. ++ ..-| ++++.= ..|.
T Consensus 136 --d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~ 212 (366)
T COG3490 136 --DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN 212 (366)
T ss_pred --CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc
Confidence 1123555556654 2222222 122368899999999988776431 11 1111 111100 0011
Q ss_pred e-eeecCC-----CCCceeeeCCCCCCcEEEEEecC
Q 048181 236 F-DIINFQ-----AKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 236 ~-~~~~l~-----g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
+ +...+| -.-..++++. ||.+|.+|.-.
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~--dgtvwfgcQy~ 246 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGR--DGTVWFGCQYR 246 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCC--CCcEEEEEEee
Confidence 0 001222 1347799999 99999999764
No 144
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=95.69 E-value=0.36 Score=50.63 Aligned_cols=158 Identities=15% Similarity=0.153 Sum_probs=104.7
Q ss_pred CCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181 30 PPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL 108 (310)
Q Consensus 30 ~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L 108 (310)
..+...|+++++|-- +++||+|-.+..|...+.++....+.. ......|..+++++..|.+
T Consensus 476 ~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~------------------~~~l~~~r~~~v~p~~g~~ 537 (877)
T KOG1215|consen 476 GDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLV------------------SKDLDLPRSIAVDPEKGLM 537 (877)
T ss_pred ccCccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEE------------------ecCCCCccceeeccccCee
Confidence 335678999999964 689999999999888886654322211 0122578899999888999
Q ss_pred EEEeCCC--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181 109 YIADAYS--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP 186 (310)
Q Consensus 109 yVad~~~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~ 186 (310)
|.+|... .|.+-.+++...+.+... .+..||++++|-.+.++|..|....+ .+...+-
T Consensus 538 ~wtd~~~~~~i~ra~~dg~~~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~~~~----------------~i~~~~~ 597 (877)
T KOG1215|consen 538 FWTDWGQPPRIERASLDGSERAVLVTN----GILWPNGLTIDYETDRLYWADAKLDY----------------TIESANM 597 (877)
T ss_pred EEecCCCCchhhhhcCCCCCceEEEeC----CccCCCcceEEeecceeEEEcccCCc----------------ceeeeec
Confidence 9998764 355555555444443322 25789999999988999999975421 1223332
Q ss_pred CCCeE-EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181 187 RSSQV-TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW 227 (310)
Q Consensus 187 ~~g~~-~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~ 227 (310)
+.... ......+..|.+++...+ ++|.++.....+.+..
T Consensus 598 ~g~~r~~~~~~~~~~p~~~~~~~~--~iyw~d~~~~~~~~~~ 637 (877)
T KOG1215|consen 598 DGQNRRVVDSEDLPHPFGLSVFED--YIYWTDWSNRAISRAE 637 (877)
T ss_pred CCCceEEeccccCCCceEEEEecc--eeEEeeccccceEeee
Confidence 21211 133456778999998865 5888888776555443
No 145
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=95.58 E-value=0.032 Score=34.38 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=29.2
Q ss_pred CCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCc
Q 048181 32 KAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDG 65 (310)
Q Consensus 32 ~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~ 65 (310)
++..|.++++|+. +.+||+|...+.|.+.+.+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 5778999999987 569999999999999987753
No 146
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.52 E-value=3 Score=41.72 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=90.6
Q ss_pred cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181 116 GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL 195 (310)
Q Consensus 116 gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~ 195 (310)
.|+.++..+ ..+.+.. +..+. .-..+++++.||+...... ...+......+.++.++.+.++...
T Consensus 380 ~Lwv~~~gg-~~~~lt~---g~~~t---~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~-- 444 (591)
T PRK13616 380 SLWVGPLGG-VAVQVLE---GHSLT---RPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS-- 444 (591)
T ss_pred EEEEEeCCC-cceeeec---CCCCC---CceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--
Confidence 477777643 3344322 22222 3478885467887743211 0001112345788877766665543
Q ss_pred cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-------ecCCCCCceeeeCCCCCCcEEEEEecCCCC
Q 048181 196 RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-------INFQAKPHNIKRNPGLLQTFWEAAIITRQP 268 (310)
Q Consensus 196 ~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-------~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~ 268 (310)
.--.....+.|||||+.|.+.- .++|+.--+.-...|..++ ..+...+..+..-. ++.|.|+.....
T Consensus 445 ~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~--~~~L~V~~~~~~-- 518 (591)
T PRK13616 445 RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT--GDSLVVGRSDPE-- 518 (591)
T ss_pred ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec--CCEEEEEecCCC--
Confidence 1112478999999999887765 3677763222112243332 22333356788888 899988865443
Q ss_pred CCCCceeeEEECCCCcEEEEEecCCCccccceeEEEecC
Q 048181 269 AGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFG 307 (310)
Q Consensus 269 ~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~~ 307 (310)
..+.+++-||..... .|.+.....+++|+...
T Consensus 519 -----~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 519 -----HPVWYVNLDGSNSDA--LPSRNLSAPVVAVAASP 550 (591)
T ss_pred -----CceEEEecCCccccc--cCCCCccCceEEEecCC
Confidence 247778888876443 24443345666665543
No 147
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.51 E-value=0.25 Score=46.27 Aligned_cols=173 Identities=13% Similarity=0.095 Sum_probs=80.8
Q ss_pred cceEEEccCCC-EEEEEe--CCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181 36 GESIAFEPVGG-AFYTGV--ADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA 111 (310)
Q Consensus 36 Pegia~d~~G~-l~~~d~--~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa 111 (310)
...-+|.++|+ |+|++. .+..++.++.+++. +.+. +|. ... ..|..+.+++..+|..
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-----------dg~-------g~~-~~g~~~s~~~~~~~Yv 98 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-----------DGP-------GDN-TFGGFLSPDDRALYYV 98 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE--------------SS--------B--TTT-EE-TTSSEEEEE
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-----------cCC-------CCC-ccceEEecCCCeEEEE
Confidence 33456778884 556554 35678899988653 3221 111 111 1244454566676555
Q ss_pred eCCCcEEEEeCCCCeEEEeeccCCCccccCccceE-EeCCCCeEEEEcCCCccCc---c--ceeEeeeecCCCceEEEEc
Q 048181 112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLD-VDQGTGVVYFTDASGVYDF---R--TIVKLNITNDSTGRLLSYN 185 (310)
Q Consensus 112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndva-vd~~~G~lyvtd~~~~~~~---~--~~~~~~~~~~~~G~l~~~d 185 (310)
.....|+++|+++.+.+.+....++ +. ..+-. ++. +++.++......-.. . ....+.++..+..+|+++|
T Consensus 99 ~~~~~l~~vdL~T~e~~~vy~~p~~--~~-g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEERVVYEVPDD--WK-GYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp ETTTEEEEEETTT--EEEEEE--TT--EE-EEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred ECCCeEEEEECCcCcEEEEEECCcc--cc-cccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 4555799999999877665443322 11 11222 344 466665432110000 0 0111234456778999999
Q ss_pred CCCCeEEEeecCCCCCceeEEccCC-CEEEEEecC-----CCeEEEEEecCC
Q 048181 186 PRSSQVTVLLRNLTGPAGVAISVDS-SFLLVSEFT-----GNRTLKYWLRGP 231 (310)
Q Consensus 186 ~~~g~~~~~~~~l~~pnGIa~~~dg-~~Lyv~d~~-----~~~I~~~~~~~~ 231 (310)
.++|+.+++.+.-.+-+=+.++|.. ..|.+|.-+ ..|||.++.+|.
T Consensus 175 l~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 175 LKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp TTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred CCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 9999999887655555666666532 344444332 346777776654
No 148
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=95.31 E-value=0.83 Score=39.88 Aligned_cols=174 Identities=17% Similarity=0.122 Sum_probs=95.7
Q ss_pred CceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCcccc-CccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFH-FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~-~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
.+-.||.+-+.+|.||-.....+|+.||+.++..+.+....-...+. ..-++.+.|.-.+|.|.
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv--------------- 91 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV--------------- 91 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE---------------
Confidence 35568888778999998755667999999999877662111111111 12244444433455443
Q ss_pred eecCCCceEEEEcCCCCeEEEeecCCCCCc------------eeEEccC------CCEEEEEecCCCeEEEEEecCCCCC
Q 048181 173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPA------------GVAISVD------SSFLLVSEFTGNRTLKYWLRGPRAN 234 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~pn------------GIa~~~d------g~~Lyv~d~~~~~I~~~~~~~~~~g 234 (310)
..+|+-+|+++++|.+......+.++. +.|+... ..+||--|+..+++++-.. +..|
T Consensus 92 ---s~~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~p--pN~G 166 (236)
T PF14339_consen 92 ---SNTGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNP--PNDG 166 (236)
T ss_pred ---ccCCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecC--CCCC
Confidence 234778888888887554443443332 3444422 4579999999888887642 2345
Q ss_pred ceee-e--cCC-CCCceeeeCCCCCCc--EEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCCC
Q 048181 235 SFDI-I--NFQ-AKPHNIKRNPGLLQT--FWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEAQ 294 (310)
Q Consensus 235 ~~~~-~--~l~-g~Pdgl~~d~~~dG~--l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~~ 294 (310)
+... . ++. ..--|+-+....++. .|....... ..+.++| ..|+....=.++.+
T Consensus 167 tL~~vG~LGvd~~~~~gFDI~~~~~~~~~a~a~~~~~~-------~~LY~vdL~TG~at~~g~i~~~ 226 (236)
T PF14339_consen 167 TLNTVGPLGVDAAGDAGFDIAGDGNGGNAAYAVLGVGG-------SGLYTVDLTTGAATLVGQIGGG 226 (236)
T ss_pred cEEeeeccccccCcccceeeecCCCcceEEEEEecCCC-------cEEEEEECCCcccEEeeecCCC
Confidence 5433 1 221 112234443200222 233332111 3677777 45777666666653
No 149
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.26 E-value=0.099 Score=32.10 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEc
Q 048181 151 TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAIS 207 (310)
Q Consensus 151 ~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~ 207 (310)
++++|+++.. .++|..+|+.+++......-...|.+|+++
T Consensus 3 ~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 3 GTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 5679999864 367888998877665555555789999885
No 150
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.24 E-value=0.74 Score=43.03 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=97.0
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA 113 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~ 113 (310)
....-++|.|+|..+.+...+..=.-+|...+.+... .+| -...-.++++. .+|.|..+-+
T Consensus 262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~----------QEG--------Hs~~v~~iaf~-~DGSL~~tGG 322 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL----------QEG--------HSKGVFSIAFQ-PDGSLAATGG 322 (459)
T ss_pred hhheeeeecCCCceeeecccccchhhcccccchhhHh----------hcc--------cccccceeEec-CCCceeeccC
Confidence 3444567777777555555444333334333222111 011 11223478896 7898876533
Q ss_pred CCcE-EEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181 114 YSGL-LVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT 192 (310)
Q Consensus 114 ~~gi-~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~ 192 (310)
...+ ...|..+|+-..+. +| +....-+|+++| +|....|.+.. ..-+||.+... ..+-
T Consensus 323 lD~~~RvWDlRtgr~im~L---~g-H~k~I~~V~fsP-NGy~lATgs~D---------------nt~kVWDLR~r-~~ly 381 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFL---AG-HIKEILSVAFSP-NGYHLATGSSD---------------NTCKVWDLRMR-SELY 381 (459)
T ss_pred ccchhheeecccCcEEEEe---cc-cccceeeEeECC-CceEEeecCCC---------------CcEEEeeeccc-ccce
Confidence 2222 23466666543332 22 344456899999 69988887653 12345555432 2222
Q ss_pred EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEe
Q 048181 193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAI 263 (310)
Q Consensus 193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~ 263 (310)
.+...-..-..+.++|+....+++.+..+.+..+.-.+- ...+. .+-.+-.-.+.+.. ||...++..
T Consensus 382 ~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~--~~~ksLaGHe~kV~s~Dis~--d~~~i~t~s 449 (459)
T KOG0272|consen 382 TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW--SPLKSLAGHEGKVISLDISP--DSQAIATSS 449 (459)
T ss_pred ecccccchhhheEecccCCeEEEEcccCcceeeecCCCc--ccchhhcCCccceEEEEecc--CCceEEEec
Confidence 233333345689999976678888887777665543211 00111 22222344455666 666555543
No 151
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=95.17 E-value=2.2 Score=38.02 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=94.0
Q ss_pred CCCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181 33 AFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA 111 (310)
Q Consensus 33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa 111 (310)
-.-.-++++++|.+-++++..+..|.-++--|... ++... .....-.-+.+.|...+.++.
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~------------------~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED------------------SHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC------------------CCcCcEEEEEEcCCCCCcEEE
Confidence 35677888888888788888888887777655432 22110 002234457776544455555
Q ss_pred eCC-Cc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181 112 DAY-SG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS 189 (310)
Q Consensus 112 d~~-~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g 189 (310)
... .. +-..|+++-++ .....| +-...|-++++| +|.+-.+. ..+|.++-+|.+.+
T Consensus 167 s~s~DktvKvWnl~~~~l---~~~~~g-h~~~v~t~~vSp-DGslcasG-----------------gkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQL---RTTFIG-HSGYVNTVTVSP-DGSLCASG-----------------GKDGEAMLWDLNEG 224 (315)
T ss_pred EccCCceEEEEccCCcch---hhcccc-ccccEEEEEECC-CCCEEecC-----------------CCCceEEEEEccCC
Confidence 443 23 55667776443 233344 235678999999 59987662 23567777776555
Q ss_pred eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 190 QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 190 ~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
+--.-.+....-|.++|+|.. .+.+-.....|..++++.
T Consensus 225 k~lysl~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 225 KNLYSLEAFDIVNSLCFSPNR--YWLCAATATSIKIWDLES 263 (315)
T ss_pred ceeEeccCCCeEeeEEecCCc--eeEeeccCCceEEEeccc
Confidence 443334455567999999964 444444444576677654
No 152
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.10 E-value=0.11 Score=32.42 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=30.2
Q ss_pred CCEEEEEeCCC-eEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181 45 GGAFYTGVADG-RILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH 102 (310)
Q Consensus 45 G~l~~~d~~~g-~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d 102 (310)
+++||+|.... +|.+.+.+|+. +.+. ......|.||++|
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi-------------------~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVI-------------------SDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEE-------------------ESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEE-------------------ECCCCCcCEEEEC
Confidence 46899999999 99999999764 3332 1346789999997
No 153
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.04 E-value=2.1 Score=40.13 Aligned_cols=199 Identities=18% Similarity=0.209 Sum_probs=106.5
Q ss_pred eeeecceEEE-eCCCCCCCcceEEEccC--CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCC
Q 048181 18 VFSIPTFTKI-LFPPKAFGGESIAFEPV--GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICR 94 (310)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~Pegia~d~~--G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 94 (310)
+|+-+....+ .|-|-....-++.|.|. +.-+.+...+|.+.-++.++.. .+. +++.-..
T Consensus 201 vW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-~l~-----------------~l~gH~~ 262 (459)
T KOG0272|consen 201 VWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET-PLQ-----------------DLEGHLA 262 (459)
T ss_pred EeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc-chh-----------------hhhcchh
Confidence 4444444332 34444455667778775 3334555556655555544321 110 1122233
Q ss_pred ceeeEEEecCCCeEEEEeCCCcEE-EEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 95 RTFGLALHYATRQLYIADAYSGLL-VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 95 ~P~Gla~d~~~g~LyVad~~~gi~-~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
+-.-++++ ++|+.+.+-....-+ ..|..++. +.+... | +-...-++++.+ +|.+..|....
T Consensus 263 RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~-ElL~QE--G-Hs~~v~~iaf~~-DGSL~~tGGlD------------ 324 (459)
T KOG0272|consen 263 RVSRVAFH-PSGKFLGTASFDSTWRLWDLETKS-ELLLQE--G-HSKGVFSIAFQP-DGSLAATGGLD------------ 324 (459)
T ss_pred hheeeeec-CCCceeeecccccchhhcccccch-hhHhhc--c-cccccceeEecC-CCceeeccCcc------------
Confidence 44568897 688877764443322 23555532 222222 2 223456899999 59998886532
Q ss_pred ecCCCceEEEEcCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC---CCCceee
Q 048181 174 TNDSTGRLLSYNPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ---AKPHNIK 249 (310)
Q Consensus 174 ~~~~~G~l~~~d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~---g~Pdgl~ 249 (310)
.-|+|| |..+|.-..+.+ .+.---+++|+|.| +.+.+-+..+.+.+.++.... . +..+| .....++
T Consensus 325 ---~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~--~--ly~ipAH~nlVS~Vk 394 (459)
T KOG0272|consen 325 ---SLGRVW--DLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS--E--LYTIPAHSNLVSQVK 394 (459)
T ss_pred ---chhhee--ecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc--c--ceecccccchhhheE
Confidence 236665 444565544443 34445799999998 566777777776666665421 1 22222 2345677
Q ss_pred eCCCCCCcEEEEEe
Q 048181 250 RNPGLLQTFWEAAI 263 (310)
Q Consensus 250 ~d~~~dG~l~va~~ 263 (310)
+++. .|++.+++.
T Consensus 395 ~~p~-~g~fL~Tas 407 (459)
T KOG0272|consen 395 YSPQ-EGYFLVTAS 407 (459)
T ss_pred eccc-CCeEEEEcc
Confidence 7751 455555543
No 154
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.02 E-value=0.94 Score=42.35 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=76.5
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181 104 ATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183 (310)
Q Consensus 104 ~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~ 183 (310)
.+|++|+......|+.+|+++++.. ......+ .....++-.+.. +|+||+++.. |.+|.
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~-~~~~~~~~~~~~-~G~i~~g~~~------------------g~~y~ 125 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVK-WSYPLLG-AVAQLSGPILGS-DGKIYVGSWD------------------GKLYA 125 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEE-ecccCcC-cceeccCceEEe-CCeEEEeccc------------------ceEEE
Confidence 6899999844445999999988743 2112111 112344445555 5999999864 46777
Q ss_pred EcCCCCeEEEee--cC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce--e------e-ecCCCCCceeeeC
Q 048181 184 YNPRSSQVTVLL--RN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF--D------I-INFQAKPHNIKRN 251 (310)
Q Consensus 184 ~d~~~g~~~~~~--~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~--~------~-~~l~g~Pdgl~~d 251 (310)
+|..+|+..-.. .. ....... +-.|+ .+|+.. ..+.++.++.+. |+. + + ....+.|- .
T Consensus 126 ld~~~G~~~W~~~~~~~~~~~~~~-v~~~~-~v~~~s-~~g~~~al~~~t---G~~~W~~~~~~~~~~~~~~~~~----~ 195 (370)
T COG1520 126 LDASTGTLVWSRNVGGSPYYASPP-VVGDG-TVYVGT-DDGHLYALNADT---GTLKWTYETPAPLSLSIYGSPA----I 195 (370)
T ss_pred EECCCCcEEEEEecCCCeEEecCc-EEcCc-EEEEec-CCCeEEEEEccC---CcEEEEEecCCccccccccCce----e
Confidence 777656543221 11 1111222 22233 244332 345555554431 111 1 1 11122222 4
Q ss_pred CCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEE
Q 048181 252 PGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTI 289 (310)
Q Consensus 252 ~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~ 289 (310)
. +|.+|+.... .. ..+..+|+ +|+..-..
T Consensus 196 ~--~~~vy~~~~~-~~------~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 196 A--SGTVYVGSDG-YD------GILYALNAEDGTLKWSQ 225 (370)
T ss_pred e--cceEEEecCC-Cc------ceEEEEEccCCcEeeee
Confidence 4 6888888774 10 26888887 78877663
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.01 E-value=2.6 Score=40.02 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=73.9
Q ss_pred CCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 93 CRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 93 ~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
.+.-.+++++.+...||++.....|+.+|............ +| -..-.-++++. +|..+.+.+.
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G--~v~gts~~~S~-ng~ylA~GS~------------ 407 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DG--SVHGTSLCISL-NGSYLATGSD------------ 407 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cC--ccceeeeeecC-CCceEEeccC------------
Confidence 34556788873344566665555699999876543221111 11 12234567777 4774444332
Q ss_pred eecCCCceEEEEcCCC----CeEEE--eecCCC-CCceeEEccCCCEEEEEecC-CCeEEEEEecCCCCCceee-ecCC-
Q 048181 173 ITNDSTGRLLSYNPRS----SQVTV--LLRNLT-GPAGVAISVDSSFLLVSEFT-GNRTLKYWLRGPRANSFDI-INFQ- 242 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~----g~~~~--~~~~l~-~pnGIa~~~dg~~Lyv~d~~-~~~I~~~~~~~~~~g~~~~-~~l~- 242 (310)
.|-|-.||.++ ...++ ..+++. .-+.|+|++|...|-++... .+.++-+.+-. ..+ .+.|
T Consensus 408 -----~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS-----~TVFsNfP~ 477 (514)
T KOG2055|consen 408 -----SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS-----CTVFSNFPT 477 (514)
T ss_pred -----cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc-----eeeeccCCC
Confidence 35555565321 11111 112222 34789999999866665543 34455444421 112 2332
Q ss_pred -----CCCceeeeCCCCCCcEE
Q 048181 243 -----AKPHNIKRNPGLLQTFW 259 (310)
Q Consensus 243 -----g~Pdgl~~d~~~dG~l~ 259 (310)
+.+..|++.+ .|.+.
T Consensus 478 ~n~~vg~vtc~aFSP--~sG~l 497 (514)
T KOG2055|consen 478 SNTKVGHVTCMAFSP--NSGYL 497 (514)
T ss_pred CCCcccceEEEEecC--CCceE
Confidence 5788899998 66544
No 156
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.97 E-value=1.1 Score=39.47 Aligned_cols=132 Identities=8% Similarity=0.033 Sum_probs=75.4
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181 104 ATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183 (310)
Q Consensus 104 ~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~ 183 (310)
.+..++-+.....|...|..++....-.. .. ..++.+.+++ +|++..+-.+ +.|-.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~----s~VtSlEvs~-dG~ilTia~g------------------ssV~F 209 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLE-FN----SPVTSLEVSQ-DGRILTIAYG------------------SSVKF 209 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEe-cC----CCCcceeecc-CCCEEEEecC------------------ceeEE
Confidence 45555543222347777877765432211 11 2367888998 4887654322 34666
Q ss_pred EcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEE
Q 048181 184 YNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEA 261 (310)
Q Consensus 184 ~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va 261 (310)
+|+++-.+-.-.+-...-+.-.++|+. .+||+--....+++||++.. .+.+. .+-+|-...+.+.+ ||.+|..
T Consensus 210 wdaksf~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSP--dGE~yAs 284 (334)
T KOG0278|consen 210 WDAKSFGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSP--DGELYAS 284 (334)
T ss_pred eccccccceeeccCccccccccccCCC-ceEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECC--CCceeec
Confidence 676543321111111233566788986 58999888888999998742 11221 33344346677777 8888776
Q ss_pred Eec
Q 048181 262 AII 264 (310)
Q Consensus 262 ~~~ 264 (310)
-..
T Consensus 285 GSE 287 (334)
T KOG0278|consen 285 GSE 287 (334)
T ss_pred cCC
Confidence 443
No 157
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.97 E-value=0.2 Score=45.98 Aligned_cols=180 Identities=13% Similarity=0.134 Sum_probs=94.7
Q ss_pred eeecceEEEeCCCCCCCcceEEEccCC-CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee
Q 048181 19 FSIPTFTKILFPPKAFGGESIAFEPVG-GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF 97 (310)
Q Consensus 19 ~~~~~~~~~~~~~~~~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~ 97 (310)
||-|=+..+ .|--.|...+|-+|+. ..++++..+|.|.-++........ .+....+--.
T Consensus 54 fakPFv~~L--~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~------------------~f~AH~G~V~ 113 (433)
T KOG0268|consen 54 FAKPFVGSL--DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR------------------TFKAHEGLVR 113 (433)
T ss_pred hhccchhhc--cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh------------------eeecccCcee
Confidence 344444444 4445667778877765 567888889999999887432111 0112334567
Q ss_pred eEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEE--------cCCCc-----c
Q 048181 98 GLALHYATRQLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFT--------DASGV-----Y 163 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvt--------d~~~~-----~ 163 (310)
||+++ .+..++|.|... ..|+++.. -+.++..... .-|+.... .++++.| |.... +
T Consensus 114 Gi~v~-~~~~~tvgdDKtvK~wk~~~~--p~~tilg~s~------~~gIdh~~-~~~~FaTcGe~i~IWD~~R~~Pv~sm 183 (433)
T KOG0268|consen 114 GICVT-QTSFFTVGDDKTVKQWKIDGP--PLHTILGKSV------YLGIDHHR-KNSVFATCGEQIDIWDEQRDNPVSSM 183 (433)
T ss_pred eEEec-ccceEEecCCcceeeeeccCC--cceeeecccc------cccccccc-ccccccccCceeeecccccCCcccee
Confidence 99997 445555554432 25565532 2222221100 01122221 1222222 11100 0
Q ss_pred Cc--cc--------eeE-eeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 164 DF--RT--------IVK-LNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 164 ~~--~~--------~~~-~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
.+ .. ... .+.....+++++.||...+....-.---..+|+|+|+| ..+.|++-...+.++-||..
T Consensus 184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence 00 00 000 11223457789999976554322121224799999999 55899999999999998864
No 158
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=94.96 E-value=2.4 Score=37.48 Aligned_cols=84 Identities=8% Similarity=0.167 Sum_probs=55.0
Q ss_pred eEEEEcCCCCeEEEeec-------CCCCCceeEEccCCC----EEEEEecCCCeEEEEEecCCCCCcee---e--ecCCC
Q 048181 180 RLLSYNPRSSQVTVLLR-------NLTGPAGVAISVDSS----FLLVSEFTGNRTLKYWLRGPRANSFD---I--INFQA 243 (310)
Q Consensus 180 ~l~~~d~~~g~~~~~~~-------~l~~pnGIa~~~dg~----~Lyv~d~~~~~I~~~~~~~~~~g~~~---~--~~l~g 243 (310)
.+|.+||+.+.++.+.+ +++.|.|+|+..+.+ ++||+. ..+.|..|.+-....|.+. + ..++.
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~t 205 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVRQFKIPT 205 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeEeeecCC
Confidence 47788887776665543 466789999987644 344443 4578888887533233322 1 34454
Q ss_pred CCceeeeCCCCCCcEEEEEecC
Q 048181 244 KPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 244 ~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
--.||..|.| -|.||++....
T Consensus 206 QTEG~VaDdE-tG~LYIaeEdv 226 (364)
T COG4247 206 QTEGMVADDE-TGFLYIAEEDV 226 (364)
T ss_pred cccceeeccc-cceEEEeeccc
Confidence 5678888775 89999997664
No 159
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.96 E-value=2.3 Score=42.58 Aligned_cols=154 Identities=17% Similarity=0.139 Sum_probs=89.3
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEE
Q 048181 39 IAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLL 118 (310)
Q Consensus 39 ia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~ 118 (310)
++|+++|..+|+.. +.+|..++...+...+... ++ .....-..+++.+++..||.+-...-+.
T Consensus 25 ~~~s~nG~~L~t~~-~d~Vi~idv~t~~~~l~s~-~~---------------ed~d~ita~~l~~d~~~L~~a~rs~llr 87 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-GDRVIIIDVATGSIALPSG-SN---------------EDEDEITALALTPDEEVLVTASRSQLLR 87 (775)
T ss_pred eeECCCCCEEEEec-CceEEEEEccCCceecccC-Cc---------------cchhhhheeeecCCccEEEEeeccceEE
Confidence 89999999888875 5567777665433211110 00 1111233577764444555554333355
Q ss_pred EEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCC
Q 048181 119 VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL 198 (310)
Q Consensus 119 ~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l 198 (310)
.++.++++...........|. --++++| +|.+.-|- ..+|++-.+|-..+..+.-..+.
T Consensus 88 v~~L~tgk~irswKa~He~Pv---i~ma~~~-~g~LlAtg-----------------gaD~~v~VWdi~~~~~th~fkG~ 146 (775)
T KOG0319|consen 88 VWSLPTGKLIRSWKAIHEAPV---ITMAFDP-TGTLLATG-----------------GADGRVKVWDIKNGYCTHSFKGH 146 (775)
T ss_pred EEEcccchHhHhHhhccCCCe---EEEEEcC-CCceEEec-----------------cccceEEEEEeeCCEEEEEecCC
Confidence 567776643222222222222 3689999 57665443 23567777777666666666554
Q ss_pred CC-CceeEEccCCCE-EEEEecCCCeEEEEEecC
Q 048181 199 TG-PAGVAISVDSSF-LLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 199 ~~-pnGIa~~~dg~~-Lyv~d~~~~~I~~~~~~~ 230 (310)
+. ...+.|.|+-++ |+++-...++++.|++..
T Consensus 147 gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 147 GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred CceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 43 367888887653 556667788899998864
No 160
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.88 E-value=4.1 Score=40.94 Aligned_cols=182 Identities=8% Similarity=-0.012 Sum_probs=93.7
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceee-EEEecCCCeEEEEeCCC
Q 048181 37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFG-LALHYATRQLYIADAYS 115 (310)
Q Consensus 37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~G-la~d~~~g~LyVad~~~ 115 (310)
.|..+.|+.++++....++.++-+..+...-.+.. .....|.+ +.|. +.|.-|++-.+.
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-------------------~GH~~PVwdV~F~-P~GyYFatas~D 514 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-------------------KGHLAPVWDVQFA-PRGYYFATASHD 514 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEe-------------------cCCCcceeeEEec-CCceEEEecCCC
Confidence 45667777776666666676666666542222221 12224443 4453 555444432222
Q ss_pred ---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE-
Q 048181 116 ---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV- 191 (310)
Q Consensus 116 ---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~- 191 (310)
++|..|.. .-.+.++. ++.-.+-+.++| +.+...|.+.. -++-.+|..+|..
T Consensus 515 ~tArLWs~d~~-~PlRifag-----hlsDV~cv~FHP-Ns~Y~aTGSsD-----------------~tVRlWDv~~G~~V 570 (707)
T KOG0263|consen 515 QTARLWSTDHN-KPLRIFAG-----HLSDVDCVSFHP-NSNYVATGSSD-----------------RTVRLWDVSTGNSV 570 (707)
T ss_pred ceeeeeecccC-Cchhhhcc-----cccccceEEECC-cccccccCCCC-----------------ceEEEEEcCCCcEE
Confidence 36655532 22233332 233344578999 46555555432 1222223323322
Q ss_pred EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181 192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITR 266 (310)
Q Consensus 192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~ 266 (310)
+.+...-.---.+++||+|++| ++-...+.|..+|+.+... ..++.+-.+--+-|.+.. ||++.++.....
T Consensus 571 RiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~--dg~vLasgg~Dn 641 (707)
T KOG0263|consen 571 RIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSR--DGNVLASGGADN 641 (707)
T ss_pred EEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEec--CCCEEEecCCCC
Confidence 2222211223678999999854 5555677777777754210 011111144566788999 999998877754
No 161
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.88 E-value=0.13 Score=31.57 Aligned_cols=41 Identities=17% Similarity=0.069 Sum_probs=29.2
Q ss_pred cCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeC
Q 048181 208 VDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRN 251 (310)
Q Consensus 208 ~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d 251 (310)
||+++||+++...+.|..++... +...- ......|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~---~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT---NKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC---CeEEEEEECCCCCceEEeC
Confidence 68899999999999999998742 22211 2334569988875
No 162
>PTZ00420 coronin; Provisional
Probab=94.81 E-value=1.6 Score=43.45 Aligned_cols=123 Identities=7% Similarity=0.011 Sum_probs=74.0
Q ss_pred CccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe---------EEEeecCCCCCceeEEccCCC
Q 048181 141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ---------VTVLLRNLTGPAGVAISVDSS 211 (310)
Q Consensus 141 ~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~---------~~~~~~~l~~pnGIa~~~dg~ 211 (310)
...+++++|.++++++|-+. +|.+..+|..++. +..+...-..-+.|+|+|++.
T Consensus 76 ~V~~lafsP~~~~lLASgS~-----------------DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~ 138 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSE-----------------DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY 138 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeC-----------------CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC
Confidence 46788888843666665432 3555555543221 111222223457999999998
Q ss_pred EEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC-CcEEEEE
Q 048181 212 FLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF-GAVLDTI 289 (310)
Q Consensus 212 ~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~-G~~~~~~ 289 (310)
.++++-...+.|..+++... .... ...+.....++++. +|.+.++.... ..+..+|+. |+++..+
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg---~~~~~i~~~~~V~Slswsp--dG~lLat~s~D--------~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENE---KRAFQINMPKKLSSLKWNI--KGNLLSGTCVG--------KHMHIIDPRKQEIASSF 205 (568)
T ss_pred eEEEEEeCCCeEEEEECCCC---cEEEEEecCCcEEEEEECC--CCCEEEEEecC--------CEEEEEECCCCcEEEEE
Confidence 77777777888888887532 2211 22233456788999 99988765433 256667753 6666655
Q ss_pred ecCC
Q 048181 290 SFEA 293 (310)
Q Consensus 290 ~~p~ 293 (310)
....
T Consensus 206 ~gH~ 209 (568)
T PTZ00420 206 HIHD 209 (568)
T ss_pred eccc
Confidence 5443
No 163
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.77 E-value=2.1 Score=39.53 Aligned_cols=143 Identities=10% Similarity=0.116 Sum_probs=85.6
Q ss_pred eeEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181 97 FGLALHYATRQLYIADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT 174 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~ 174 (310)
..|.+. ++|..+++... ..|...|++++....+.-. .+....=+..+|+ |..+|+-+-.
T Consensus 199 tsmqwn-~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----glgg~slLkwSPd-gd~lfaAt~d------------- 259 (445)
T KOG2139|consen 199 TSMQWN-EDGTILVTASFGSSSIMIWDPDTGQKIPLIPK----GLGGFSLLKWSPD-GDVLFAATCD------------- 259 (445)
T ss_pred eEEEEc-CCCCEEeecccCcceEEEEcCCCCCccccccc----CCCceeeEEEcCC-CCEEEEeccc-------------
Confidence 367775 67877775433 3488888888766555311 1112234788995 7766654321
Q ss_pred cCCCceEEEEcCCC--CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC------cee--e-ecC--
Q 048181 175 NDSTGRLLSYNPRS--SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN------SFD--I-INF-- 241 (310)
Q Consensus 175 ~~~~G~l~~~d~~~--g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g------~~~--~-~~l-- 241 (310)
+++++-..+ -..+...-+-..-.+-+++|+|++|+++-+...+|+++..++...- ..+ + ..+
T Consensus 260 -----avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 260 -----AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred -----ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 133332111 1112222122255788899999999999999999999988765211 011 1 222
Q ss_pred ----------CCCCceeeeCCCCCCcEEEEEecC
Q 048181 242 ----------QAKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 242 ----------~g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
-|.+.-|+.|+ .|+..+...-+
T Consensus 335 ~ti~ag~~l~cgeaq~lawDp--sGeyLav~fKg 366 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDP--SGEYLAVIFKG 366 (445)
T ss_pred hhhhcCcccccCccceeeECC--CCCEEEEEEcC
Confidence 14588899999 99776665544
No 164
>smart00284 OLF Olfactomedin-like domains.
Probab=94.70 E-value=2.9 Score=37.08 Aligned_cols=173 Identities=11% Similarity=0.149 Sum_probs=92.8
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181 25 TKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY 103 (310)
Q Consensus 25 ~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~ 103 (310)
+++.+|-...|.--++. +|.+||---....|.|++...+.+. ........+. . .....-....-..+|+|
T Consensus 66 ~~~~Lp~~~~GtG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~----~--~~~Y~~~~~sdiDlAvD- 136 (255)
T smart00284 66 TDHPLPHAGQGTGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYN----N--RFPYAWGGFSDIDLAVD- 136 (255)
T ss_pred eEEECCCccccccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCccccc----c--ccccccCCCccEEEEEc-
Confidence 55677766666666666 5899998777889999998865432 1110000000 0 00000011122467886
Q ss_pred CCCeEEEE---eCCCc---EEEEeCCCCeEEEee-ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181 104 ATRQLYIA---DAYSG---LLVVGPNGRLATQLA-TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND 176 (310)
Q Consensus 104 ~~g~LyVa---d~~~g---i~~id~~~~~~~~~~-~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~ 176 (310)
+..|||. ....+ |-++|+++-+++... +...-. ..-|..-+. |.||++++.. .
T Consensus 137 -E~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~--sa~naFmvC---GvLY~~~s~~--------------~ 196 (255)
T smart00284 137 -ENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKR--SASNAFMIC---GILYVTRSLG--------------S 196 (255)
T ss_pred -CCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcc--cccccEEEe---eEEEEEccCC--------------C
Confidence 5558875 22233 458998876554332 222211 122444443 8999998632 1
Q ss_pred CCce-EEEEcCCCCeEEEeecCCC----CCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181 177 STGR-LLSYNPRSSQVTVLLRNLT----GPAGVAISVDSSFLLVSEFTGNRTLKYWL 228 (310)
Q Consensus 177 ~~G~-l~~~d~~~g~~~~~~~~l~----~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~ 228 (310)
...+ .+.||..+++-+.+.=.+. .-.-|..+|..+.||+=|. +.+..|++
T Consensus 197 ~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdn--g~~l~Y~v 251 (255)
T smart00284 197 KGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWNN--GHLVHYDI 251 (255)
T ss_pred CCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEeC--CeEEEEEE
Confidence 1223 4667876654333221222 2345888898888998654 44555554
No 165
>PTZ00420 coronin; Provisional
Probab=94.64 E-value=5.3 Score=39.80 Aligned_cols=163 Identities=12% Similarity=0.133 Sum_probs=89.0
Q ss_pred CCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCC-ce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181 30 PPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPD-GF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT 105 (310)
Q Consensus 30 ~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g-~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~ 105 (310)
.+.-....+++|.|+ ++++++...++.|..++... +. ..+. ...+ .+.........++++ ++
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-------~p~~------~L~gH~~~V~sVaf~-P~ 136 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-------DPQC------ILKGHKKKISIIDWN-PM 136 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-------cceE------EeecCCCcEEEEEEC-CC
Confidence 333345778999986 78888888899988887542 11 1000 0000 001112334578887 44
Q ss_pred C-eEEEEeC-CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181 106 R-QLYIADA-YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183 (310)
Q Consensus 106 g-~LyVad~-~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~ 183 (310)
+ .++++.. ...|..+|..+++...... .. .....+++++ +|.++++... ++.+..
T Consensus 137 g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~----~~V~Slswsp-dG~lLat~s~-----------------D~~IrI 193 (568)
T PTZ00420 137 NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MP----KKLSSLKWNI-KGNLLSGTCV-----------------GKHMHI 193 (568)
T ss_pred CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cC----CcEEEEEECC-CCCEEEEEec-----------------CCEEEE
Confidence 5 4444433 3347777887665321111 11 2356889999 4888876432 356788
Q ss_pred EcCCCCeEEEeecCCCCC-cee-----EEccCCCEEEEEecCC---CeEEEEEec
Q 048181 184 YNPRSSQVTVLLRNLTGP-AGV-----AISVDSSFLLVSEFTG---NRTLKYWLR 229 (310)
Q Consensus 184 ~d~~~g~~~~~~~~l~~p-nGI-----a~~~dg~~Lyv~d~~~---~~I~~~~~~ 229 (310)
+|+.+++.......-... +.. .+++|+++|..+-... +.|..+++.
T Consensus 194 wD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 194 IDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred EECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 888776543322211111 111 2357887666554433 367777765
No 166
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=94.63 E-value=3.4 Score=39.33 Aligned_cols=143 Identities=12% Similarity=0.106 Sum_probs=82.3
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCCeEEEE
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATRQLYIA 111 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~LyVa 111 (310)
..-.+++|..+|+++.++..+|.++-++.+|.+. ++. .-..| ..|.+. ++|+-+++
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~---------------------~HkgPI~slKWn-k~G~yilS 293 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG---------------------QHKGPIFSLKWN-KKGTYILS 293 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh---------------------ccCCceEEEEEc-CCCCEEEe
Confidence 3566899999999999999999999999887653 221 11123 368885 56654444
Q ss_pred e-CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce--EEEEcCCC
Q 048181 112 D-AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR--LLSYNPRS 188 (310)
Q Consensus 112 d-~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~--l~~~d~~~ 188 (310)
. ....+..+|..+|+..+....-.. + .-|+..-. +.. |++- ..+|. |++++.+
T Consensus 294 ~~vD~ttilwd~~~g~~~q~f~~~s~-~---~lDVdW~~-~~~-F~ts-----------------~td~~i~V~kv~~~- 349 (524)
T KOG0273|consen 294 GGVDGTTILWDAHTGTVKQQFEFHSA-P---ALDVDWQS-NDE-FATS-----------------STDGCIHVCKVGED- 349 (524)
T ss_pred ccCCccEEEEeccCceEEEeeeeccC-C---ccceEEec-Cce-Eeec-----------------CCCceEEEEEecCC-
Confidence 3 334477788777765443211111 0 01232221 111 2211 12333 5556654
Q ss_pred CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeE
Q 048181 189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRT 223 (310)
Q Consensus 189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I 223 (310)
..+..+...-..-|+|-++|.|+ |+.+.+....+
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~Tl 383 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTL 383 (524)
T ss_pred CcceeeecccCceEEEEECCCCc-eEEEecCCCee
Confidence 44555555444568999999987 66665555443
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.63 E-value=2.6 Score=40.50 Aligned_cols=105 Identities=11% Similarity=0.025 Sum_probs=67.3
Q ss_pred CCCceEEEEcCCCCeEEEeecCC-CC-CceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCC
Q 048181 176 DSTGRLLSYNPRSSQVTVLLRNL-TG-PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNP 252 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~~~~~l-~~-pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~ 252 (310)
..+|.|..||-.......-+... .. ..||+|+|-...|+|+--...+|+.||..... ....+ ..-| -.-+++.+
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l~y~~P--lstvaf~~ 260 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRLTYSHP--LSTVAFSE 260 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-ccceeeecCC--cceeeecC
Confidence 34577777775422222112111 22 36999999988899999999999999986432 22222 2222 24588888
Q ss_pred CCCCcEEEEEecCCCCCCCCceeeEEECCCCc--EEEEEecCC
Q 048181 253 GLLQTFWEAAIITRQPAGTPVPIGQRISAFGA--VLDTISFEA 293 (310)
Q Consensus 253 ~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~--~~~~~~~p~ 293 (310)
+|.+.++.... ++++.||-.++ .+.+++...
T Consensus 261 --~G~~L~aG~s~--------G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 261 --CGTYLCAGNSK--------GELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred --CceEEEeecCC--------ceEEEEecccCCCCceEeeecc
Confidence 99887776654 58888887664 566666554
No 168
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=94.43 E-value=2.7 Score=35.57 Aligned_cols=147 Identities=12% Similarity=0.141 Sum_probs=81.0
Q ss_pred cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181 116 GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL 195 (310)
Q Consensus 116 gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~ 195 (310)
.|+.++..+.....+.-...+ ...+++.+|++..+.+.-.. ...++..||.+...+..+
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~~~~i~~~- 98 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVKGKKIFSF- 98 (194)
T ss_pred EEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEcc----------------CCcccEEEcCcccEeEee-
Confidence 377776555443333111111 25799999953334333211 123566666653332222
Q ss_pred cCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecC-CCCCCCC
Q 048181 196 RNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIIT-RQPAGTP 272 (310)
Q Consensus 196 ~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~-~~~~~~~ 272 (310)
. -...|.|.|+|+|++|.++... .+.|..++.... .......- .....++.++ ||+..++.... |. ..
T Consensus 99 ~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--~~i~~~~~-~~~t~~~WsP--dGr~~~ta~t~~r~---~~ 169 (194)
T PF08662_consen 99 G-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--KKISTFEH-SDATDVEWSP--DGRYLATATTSPRL---RV 169 (194)
T ss_pred c-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--EEeecccc-CcEEEEEEcC--CCCEEEEEEeccce---ec
Confidence 2 2356899999999988887654 467888876521 11111112 2367899999 99988776543 21 01
Q ss_pred ceeeEEECCCCcEEEEEecC
Q 048181 273 VPIGQRISAFGAVLDTISFE 292 (310)
Q Consensus 273 ~~~v~~~~~~G~~~~~~~~p 292 (310)
...+..++=+|+.+.....+
T Consensus 170 dng~~Iw~~~G~~l~~~~~~ 189 (194)
T PF08662_consen 170 DNGFKIWSFQGRLLYKKPFD 189 (194)
T ss_pred cccEEEEEecCeEeEecchh
Confidence 12345566678877766553
No 169
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.41 E-value=2.2 Score=39.87 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=81.1
Q ss_pred cceEEEccCCCEEEEEeCCCeEEEEECCC-ce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181 36 GESIAFEPVGGAFYTGVADGRILKYQAPD-GF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA 113 (310)
Q Consensus 36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~ 113 (310)
-.+|++. +..++++-.+++|+-++.-+ .. ..+ +..+.-..+.+....-.|..+..
T Consensus 305 cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv---------------------~~gg~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 305 CNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV---------------------PLGGRVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred ccceEec--ceeeeecccccceEEEeccCCceeeEe---------------------ecCcceeeEeeccCCeEEeeecC
Confidence 3345543 34456666677777776332 21 111 22334445555423345665644
Q ss_pred CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181 114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV 193 (310)
Q Consensus 114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~ 193 (310)
.+.+-.||..+.++........-+--.-.+-+.++| ++....+ +..+|+||.++..+++++.
T Consensus 362 Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaA-----------------GS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 362 DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAA-----------------GSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred CCceeeeecccccEEEEeeccccccccccceeEECC-CCceeee-----------------ccCCCcEEEEEccCceEEE
Confidence 455778888876665543321101111245677888 3553333 2346999999998999887
Q ss_pred eecCCCC---CceeEEccCCCEEEEEec
Q 048181 194 LLRNLTG---PAGVAISVDSSFLLVSEF 218 (310)
Q Consensus 194 ~~~~l~~---pnGIa~~~dg~~Lyv~d~ 218 (310)
....-.. -+.++|++-|+.|+-++.
T Consensus 424 ~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 424 VLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred EeccCCCCcceEEEEEcCCCchhhcccC
Confidence 6654332 368899999987776654
No 170
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.17 E-value=4 Score=38.37 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=80.4
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA 113 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~ 113 (310)
....-++|.||.+.+++.-.+-.+..++.+.+....... ......+..-++- ++|.=+|+-.
T Consensus 270 ~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-----------------~~~~~S~~sc~W~-pDg~~~V~Gs 331 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-----------------SGLGFSVSSCAWC-PDGFRFVTGS 331 (519)
T ss_pred CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-----------------cCcCCCcceeEEc-cCCceeEecC
Confidence 344557788887733333333344455555332111000 0012344556664 5666667654
Q ss_pred C-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181 114 Y-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT 192 (310)
Q Consensus 114 ~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~ 192 (310)
. +++...|.++.... ...|.......|+++.+++-.++..+.. ..+.-|+..+..-.
T Consensus 332 ~dr~i~~wdlDgn~~~----~W~gvr~~~v~dlait~Dgk~vl~v~~d------------------~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 332 PDRTIIMWDLDGNILG----NWEGVRDPKVHDLAITYDGKYVLLVTVD------------------KKIRLYNREARVDR 389 (519)
T ss_pred CCCcEEEecCCcchhh----cccccccceeEEEEEcCCCcEEEEEecc------------------cceeeechhhhhhh
Confidence 4 45888898875432 2233333456799999964455544432 12333332211101
Q ss_pred EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
-+...-..-..+.+|.||+ +..+.-..+.|.-.++.
T Consensus 390 ~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 390 GLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLE 425 (519)
T ss_pred ccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecc
Confidence 0222222336789999998 55566677777777765
No 171
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.12 E-value=1.9 Score=43.71 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=88.9
Q ss_pred CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-EeC
Q 048181 35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-ADA 113 (310)
Q Consensus 35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad~ 113 (310)
--.|+++|.-++++++...+|-+.-++-.++. ... .......+.++..+ +...+++ +..
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~------------------~l~l~~~~~~iv~h-r~s~l~a~~~d 554 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKK------------------SLRLGSSITGIVYH-RVSDLLAIALD 554 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcc-eee------------------eeccCCCcceeeee-ehhhhhhhhcC
Confidence 45689999878877777777766666665432 110 01122234566665 3333443 333
Q ss_pred CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181 114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV 193 (310)
Q Consensus 114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~ 193 (310)
...|..+|..+.++ ...+.| .-+..||++++|+ |+=.++-+. ++.|..+|.-++..
T Consensus 555 df~I~vvD~~t~kv---vR~f~g-h~nritd~~FS~D-grWlisasm-----------------D~tIr~wDlpt~~l-- 610 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKV---VREFWG-HGNRITDMTFSPD-GRWLISASM-----------------DSTIRTWDLPTGTL-- 610 (910)
T ss_pred ceeEEEEEchhhhh---hHHhhc-cccceeeeEeCCC-CcEEEEeec-----------------CCcEEEEeccCcce--
Confidence 44699999876543 233333 2356899999995 775554322 36777788666653
Q ss_pred eecCCC---CCceeEEccCCCEEEEEecCCCeEEEE
Q 048181 194 LLRNLT---GPAGVAISVDSSFLLVSEFTGNRTLKY 226 (310)
Q Consensus 194 ~~~~l~---~pnGIa~~~dg~~Lyv~d~~~~~I~~~ 226 (310)
++.+. -+-.+.++|.|.+|-.+....+-|+-+
T Consensus 611 -ID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 611 -IDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred -eeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 33332 346899999999888777766666543
No 172
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.96 E-value=3.9 Score=38.08 Aligned_cols=178 Identities=14% Similarity=0.182 Sum_probs=100.9
Q ss_pred hhcCCceeeeecceEE--EeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCcccc
Q 048181 11 VFSLPRMVFSIPTFTK--ILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLD 88 (310)
Q Consensus 11 ~~~~~~~~~~~~~~~~--~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~ 88 (310)
++-.|+-+|....+.+ -.++|.-.---++.|.|+|..+.++..+..++-+|.+...-.+. |.|
T Consensus 91 lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t----------~Kg----- 155 (480)
T KOG0271|consen 91 LVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT----------CKG----- 155 (480)
T ss_pred EEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee----------ecC-----
Confidence 3445666665554444 24455434455788999999888888888888888875432221 322
Q ss_pred CCCCCCceeeEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCC----CCeEEEEcCCCcc
Q 048181 89 LGPICRRTFGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG----TGVVYFTDASGVY 163 (310)
Q Consensus 89 ~~~~~~~P~Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~----~G~lyvtd~~~~~ 163 (310)
--..-.-+++. ++|..+++-...| |...||++|+. +...+.| +-...+.++..|- ..+.+.+
T Consensus 156 ---H~~WVlcvaws-PDgk~iASG~~dg~I~lwdpktg~~--~g~~l~g-H~K~It~Lawep~hl~p~~r~las------ 222 (480)
T KOG0271|consen 156 ---HKNWVLCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQ--IGRALRG-HKKWITALAWEPLHLVPPCRRLAS------ 222 (480)
T ss_pred ---CccEEEEEEEC-CCcchhhccccCCeEEEecCCCCCc--ccccccC-cccceeEEeecccccCCCccceec------
Confidence 12234567885 7888766544444 88899988753 2333443 2234556665541 1232222
Q ss_pred CccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCC-CceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 164 DFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG-PAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 164 ~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~-pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
...+|.+..+|...++......+-.. -..+.+--+| |+++-+..++|..++..
T Consensus 223 -----------~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 223 -----------SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRAL 276 (480)
T ss_pred -----------ccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEcc
Confidence 23457777777665544443333222 2456665454 55566666766666543
No 173
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.82 E-value=2.4 Score=39.76 Aligned_cols=170 Identities=14% Similarity=0.219 Sum_probs=102.0
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD 112 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad 112 (310)
..+.+.+|-|||.-++++..++.|..++.+|... .+. | .....-..|++..++..++...
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~------------g-------vr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE------------G-------VRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc------------c-------cccceeEEEEEcCCCcEEEEEe
Confidence 4688999999998899999999999999987541 111 0 1123345788753344566555
Q ss_pred CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCc----cCcc--------------ce------
Q 048181 113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGV----YDFR--------------TI------ 168 (310)
Q Consensus 113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~----~~~~--------------~~------ 168 (310)
....|..++.++..-+.+.+. .+++ ....++. +|.+..++-... ++.. .+
T Consensus 374 ~d~~i~l~~~e~~~dr~lise--~~~i---ts~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLISE--EQPI---TSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred cccceeeechhhhhhhccccc--cCce---eEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 555577776654221112211 1122 2455665 366665543211 0000 00
Q ss_pred ----eEeeeecCCCceEEEEcCCCCeEEEeecC-CCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181 169 ----VKLNITNDSTGRLLSYNPRSSQVTVLLRN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWL 228 (310)
Q Consensus 169 ----~~~~~~~~~~G~l~~~d~~~g~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~ 228 (310)
..-+..+..++.||.++..+|++-....+ ...-|-++++|....++.+.+..+.|+...+
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 00134566788899999888876555544 3456999999988888888777777665543
No 174
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.81 E-value=9.6 Score=39.57 Aligned_cols=185 Identities=11% Similarity=0.089 Sum_probs=97.9
Q ss_pred cceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181 36 GESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY 114 (310)
Q Consensus 36 Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~ 114 (310)
..+++|.+. ++.+.+...++.|.-++...+..... +......-..+++++.++.++++-..
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~------------------~~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE------------------MKEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE------------------ecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 457788764 66677777788888888764332111 01122335678887446776665444
Q ss_pred Cc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe--E
Q 048181 115 SG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ--V 191 (310)
Q Consensus 115 ~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~--~ 191 (310)
.+ |..+|..++....... .. .....+.+.+.+|..+++-. .+|.++.||..+.+ .
T Consensus 597 Dg~v~iWd~~~~~~~~~~~---~~--~~v~~v~~~~~~g~~latgs-----------------~dg~I~iwD~~~~~~~~ 654 (793)
T PLN00181 597 DGSVKLWSINQGVSIGTIK---TK--ANICCVQFPSESGRSLAFGS-----------------ADHKVYYYDLRNPKLPL 654 (793)
T ss_pred CCEEEEEECCCCcEEEEEe---cC--CCeEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCccc
Confidence 44 6677776543321111 11 12334555433466665543 34778888875443 1
Q ss_pred EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC----cee-eecCCCCCceeeeCCCCCCcEEEEEec
Q 048181 192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN----SFD-IINFQAKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g----~~~-~~~l~g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
..+...-..-..+.|. ++++ +++-+..+.|..+++.....+ ... +.+......-++++. +|.+.++...
T Consensus 655 ~~~~~h~~~V~~v~f~-~~~~-lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~--~~~~lasgs~ 728 (793)
T PLN00181 655 CTMIGHSKTVSYVRFV-DSST-LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV--SDGYIATGSE 728 (793)
T ss_pred eEecCCCCCEEEEEEe-CCCE-EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC--CCCEEEEEeC
Confidence 2222222234678886 5664 556667777887777532111 111 112222345577887 7776555443
No 175
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=93.78 E-value=2.5 Score=38.56 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=75.2
Q ss_pred ceeeEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccC-------CCccccCccceEEe----CCCCeEEEEcCCCc
Q 048181 95 RTFGLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATGA-------EGQAFHFLDGLDVD----QGTGVVYFTDASGV 162 (310)
Q Consensus 95 ~P~Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~-------~g~~~~~pndvavd----~~~G~lyvtd~~~~ 162 (310)
..+.+..+ .+|.++|+... ..|++|++++|++....... .+..|.+-.|..+. . ++.|-+=|....
T Consensus 145 HiNsV~~~-~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~-~~~IslFDN~~~ 222 (299)
T PF14269_consen 145 HINSVDKD-DDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESND-DGTISLFDNANS 222 (299)
T ss_pred Eeeeeeec-CCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCC-CCEEEEEcCCCC
Confidence 45678776 68888887654 35999999988875433221 11235556677776 4 466666554211
Q ss_pred cCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCc--------eeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 163 YDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPA--------GVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 163 ~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pn--------GIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
-. .......|+++.+|+.+.+++.+..-...|+ .+..-|+|+ ++|++...+++.-|+.+|
T Consensus 223 ~~-------~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G 290 (299)
T PF14269_consen 223 DF-------NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG 290 (299)
T ss_pred CC-------CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence 00 0112356889999998766655443221232 334445666 677777777777776654
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=93.76 E-value=4.4 Score=37.88 Aligned_cols=165 Identities=12% Similarity=0.149 Sum_probs=92.6
Q ss_pred CCCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181 29 FPPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ 107 (310)
Q Consensus 29 ~~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~ 107 (310)
|.|.-...--++|+|- .+++++.-.+..|.-++-+.+...+.. .-...-..+.+. .+|.
T Consensus 127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l-------------------~hpd~i~S~sfn-~dGs 186 (472)
T KOG0303|consen 127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL-------------------DHPDMVYSMSFN-RDGS 186 (472)
T ss_pred EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec-------------------CCCCeEEEEEec-cCCc
Confidence 3333334445677764 466777767777777776644322210 111223467786 7888
Q ss_pred EEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181 108 LYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP 186 (310)
Q Consensus 108 LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~ 186 (310)
++++... ..|..+|+..+++..-...-.| . .|.-+.+-. +|.++.|..+.. .+-++-.+|+
T Consensus 187 ~l~TtckDKkvRv~dpr~~~~v~e~~~heG--~-k~~Raifl~-~g~i~tTGfsr~--------------seRq~aLwdp 248 (472)
T KOG0303|consen 187 LLCTTCKDKKVRVIDPRRGTVVSEGVAHEG--A-KPARAIFLA-SGKIFTTGFSRM--------------SERQIALWDP 248 (472)
T ss_pred eeeeecccceeEEEcCCCCcEeeecccccC--C-CcceeEEec-cCceeeeccccc--------------cccceeccCc
Confidence 8887554 3488999988765332211122 2 222333444 477666554321 1112333444
Q ss_pred CCCeEEEeecCCCCCceeE---EccCCCEEEEEecCCCeEEEEEecCC
Q 048181 187 RSSQVTVLLRNLTGPAGVA---ISVDSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 187 ~~g~~~~~~~~l~~pnGIa---~~~dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
++-+.-.....+...|||. +|+|.+.||++-.+.+.|+-|.+..+
T Consensus 249 ~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 249 NNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 4322222333444567776 47899999999999999988887643
No 177
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=9.6 Score=39.42 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=95.4
Q ss_pred CCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc--eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181 31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG--FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL 108 (310)
Q Consensus 31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L 108 (310)
|......++.++|..+++++...++.|+.++.+.. ..+|. ....+-+=|+.+ +..+|
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--------------------rendRFW~laah-P~lNL 306 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--------------------RENDRFWILAAH-PELNL 306 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeee--------------------ccCCeEEEEEec-CCcce
Confidence 55667889999999998888888888888887743 22332 233456678886 78999
Q ss_pred EEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181 109 YIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS 188 (310)
Q Consensus 109 yVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~ 188 (310)
|.|-+..|+.++-.+-.+ | ..+++. ++-+|+-|. +|+.+|-.+
T Consensus 307 fAAgHDsGm~VFkleREr-----------p-----a~~v~~-n~LfYvkd~--------------------~i~~~d~~t 349 (1202)
T KOG0292|consen 307 FAAGHDSGMIVFKLERER-----------P-----AYAVNG-NGLFYVKDR--------------------FIRSYDLRT 349 (1202)
T ss_pred eeeecCCceEEEEEcccC-----------c-----eEEEcC-CEEEEEccc--------------------eEEeeeccc
Confidence 988777776555433111 1 234554 466666542 355555433
Q ss_pred CeEEEee---cC---CCCCceeEEccCCCEEEEEecCC---CeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEE
Q 048181 189 SQVTVLL---RN---LTGPAGVAISVDSSFLLVSEFTG---NRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFW 259 (310)
Q Consensus 189 g~~~~~~---~~---l~~pnGIa~~~dg~~Lyv~d~~~---~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~ 259 (310)
.+-..+. .. ..-|..+.++|..+.++++.... ..++.+.-+. .+.. + .++...-.. ++-+|
T Consensus 350 ~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~--~~~~-----~-~~~~~k~tG--~~a~f 419 (1202)
T KOG0292|consen 350 QKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDS--DGVS-----D-GKDVKKGTG--EGALF 419 (1202)
T ss_pred cccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcc--cccC-----C-chhhhcCCC--CceEE
Confidence 2111111 11 13467899999888888874322 2333332211 1111 1 144444444 66788
Q ss_pred EEEec
Q 048181 260 EAAII 264 (310)
Q Consensus 260 va~~~ 264 (310)
||...
T Consensus 420 varNr 424 (1202)
T KOG0292|consen 420 VARNR 424 (1202)
T ss_pred EEecc
Confidence 87654
No 178
>KOG4328 consensus WD40 protein [Function unknown]
Probab=93.69 E-value=5.4 Score=37.88 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=58.5
Q ss_pred CceeEEccCCCEEEEEecCCCeEEEEEec---CCC--CCceeeecCC---CCCceeeeCCCCCCcEEEEEecCCCCCCCC
Q 048181 201 PAGVAISVDSSFLLVSEFTGNRTLKYWLR---GPR--ANSFDIINFQ---AKPHNIKRNPGLLQTFWEAAIITRQPAGTP 272 (310)
Q Consensus 201 pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~---~~~--~g~~~~~~l~---g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~ 272 (310)
-|...|||.+.+ +++-...++|+.|+-+ ... .++..-.+.. --|---++++ +-+|.+...-.+
T Consensus 372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P--~~~li~vg~~~r------ 442 (498)
T KOG4328|consen 372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP--DYNLIVVGRYPR------ 442 (498)
T ss_pred eeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC--CccEEEEeccCc------
Confidence 488999999988 5676778889988763 111 1111101111 1245566777 777665555443
Q ss_pred ceeeEEECCCCc-EEEEEecCCCccccceeEEEecC
Q 048181 273 VPIGQRISAFGA-VLDTISFEAQYSTTPISEVQPFG 307 (310)
Q Consensus 273 ~~~v~~~~~~G~-~~~~~~~p~~~~~~~~t~~~~~~ 307 (310)
.+-.||++|+ .+..+++|....++.|-+.-+++
T Consensus 443 --~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 443 --PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred --ceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 5888998865 58999999764444444443333
No 179
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.47 E-value=1.5 Score=39.66 Aligned_cols=142 Identities=12% Similarity=0.214 Sum_probs=77.4
Q ss_pred CcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEE
Q 048181 35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIA 111 (310)
Q Consensus 35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVa 111 (310)
-...+.|.|...++.++..++.|--++-.... +-+. . + .....-..|.++ +.|. |.|.
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K--------~---------~-qd~~~vrsiSfH-PsGefllvg 234 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFK--------V---------F-QDTEPVRSISFH-PSGEFLLVG 234 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHH--------H---------h-hccceeeeEeec-CCCceEEEe
Confidence 34567888887877777777777666543211 0010 0 0 111123478887 4554 4443
Q ss_pred eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181 112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV 191 (310)
Q Consensus 112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~ 191 (310)
....-+..+|..+-+.- +....+.+.-...+.+..++ +|++|+|-+. +|.+-.+|.-+++.
T Consensus 235 TdHp~~rlYdv~T~Qcf-vsanPd~qht~ai~~V~Ys~-t~~lYvTaSk-----------------DG~IklwDGVS~rC 295 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQCF-VSANPDDQHTGAITQVRYSS-TGSLYVTASK-----------------DGAIKLWDGVSNRC 295 (430)
T ss_pred cCCCceeEEeccceeEe-eecCcccccccceeEEEecC-CccEEEEecc-----------------CCcEEeeccccHHH
Confidence 22223666777664332 22233444455678999999 6999999764 36666666433322
Q ss_pred EEee---cCCCCCceeEEccCCCEEE
Q 048181 192 TVLL---RNLTGPAGVAISVDSSFLL 214 (310)
Q Consensus 192 ~~~~---~~l~~pnGIa~~~dg~~Ly 214 (310)
..-+ .+-..-....|+.+|++++
T Consensus 296 v~t~~~AH~gsevcSa~Ftkn~kyiL 321 (430)
T KOG0640|consen 296 VRTIGNAHGGSEVCSAVFTKNGKYIL 321 (430)
T ss_pred HHHHHhhcCCceeeeEEEccCCeEEe
Confidence 1111 1122235667888887543
No 180
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.39 E-value=9.5 Score=38.24 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=26.1
Q ss_pred eecCCCC-CceeEEccCCCEEEEEe-cCCCeEEEEEecCCC
Q 048181 194 LLRNLTG-PAGVAISVDSSFLLVSE-FTGNRTLKYWLRGPR 232 (310)
Q Consensus 194 ~~~~l~~-pnGIa~~~dg~~Lyv~d-~~~~~I~~~~~~~~~ 232 (310)
+...+.. +..++|..++. |+|.. .....++++.++|..
T Consensus 491 l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 491 VGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred eecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcc
Confidence 3344544 58899999887 55643 345679999999763
No 181
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.39 E-value=6.6 Score=36.43 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=56.9
Q ss_pred CeEEEEeCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181 106 RQLYIADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183 (310)
Q Consensus 106 g~LyVad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~ 183 (310)
+-|++.+.. ..|+.++.+++..+.+.. | .+.--.-+.+|++++.|||+-.... ...-.||+
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~~~~~lT~---G-~~~V~~i~~~d~~~~~iyf~a~~~~-------------p~~r~lY~ 311 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGGKPRQLTS---G-DWEVTSILGWDEDNNRIYFTANGDN-------------PGERHLYR 311 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSSEEEESS----S-SS-EEEEEEEECTSSEEEEEESSGG-------------TTSBEEEE
T ss_pred EEEEEEEcCCCcEEEEEcccccceecccc---C-ceeecccceEcCCCCEEEEEecCCC-------------CCceEEEE
Confidence 345555522 249999999887665432 1 1222224678887789999865421 12236899
Q ss_pred EcCC-CCeEEEeecCCCCCc-eeEEccCCCEEEEE
Q 048181 184 YNPR-SSQVTVLLRNLTGPA-GVAISVDSSFLLVS 216 (310)
Q Consensus 184 ~d~~-~g~~~~~~~~l~~pn-GIa~~~dg~~Lyv~ 216 (310)
++.+ +++++.+.... ..+ .+.|||||+++..+
T Consensus 312 v~~~~~~~~~~LT~~~-~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 312 VSLDSGGEPKCLTCED-GDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EETTETTEEEESSTTS-STTEEEEE-TTSSEEEEE
T ss_pred EEeCCCCCeEeccCCC-CCceEEEECCCCCEEEEE
Confidence 9888 77776665433 344 89999999965444
No 182
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=6.1 Score=35.77 Aligned_cols=103 Identities=23% Similarity=0.269 Sum_probs=59.7
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181 104 ATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183 (310)
Q Consensus 104 ~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~ 183 (310)
.+...|+||...|+..+|..+-..-++...++-. ...-++.++ +...||+|... | ++.
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--gyaygv~vs--Gn~aYVadldd-----------------g-fLi 152 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD--GYAYGVYVS--GNYAYVADLDD-----------------G-FLI 152 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCC--ceEEEEEec--CCEEEEeeccC-----------------c-EEE
Confidence 4788999999999888886542211111222111 234467777 57899999643 2 444
Q ss_pred EcCCCCeEEEeecCCCCCce----eEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181 184 YNPRSSQVTVLLRNLTGPAG----VAISVDSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 184 ~d~~~g~~~~~~~~l~~pnG----Ia~~~dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
+|-.+-.--++......|.| +++| |++-|++....+ +..++++.+
T Consensus 153 vdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp 201 (370)
T COG5276 153 VDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNP 201 (370)
T ss_pred EECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCC-eEEEEccCC
Confidence 44322222223444445544 6666 678899876544 556777754
No 183
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.10 E-value=10 Score=37.83 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=89.1
Q ss_pred eeEEEecCCCeEEEEeCCC------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181 97 FGLALHYATRQLYIADAYS------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK 170 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~~------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~ 170 (310)
.|++. -+|.||+.-+.. .+-++|+.+.+.+.++.... ...--++++- +|.||+.-.....
T Consensus 374 ~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~--~g~iYi~GG~~~~------- 439 (571)
T KOG4441|consen 374 FGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVL--GGKLYIIGGGDGS------- 439 (571)
T ss_pred ceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEE--CCEEEEEcCcCCC-------
Confidence 36666 389999975432 38899999877665543221 1122355555 5999998653210
Q ss_pred eeeecCCCceEEEEcCCCCeEEEeecCC--CCCceeEEccCCCEEEEEecCC-----CeEEEEEecCCCCCceee-ecC-
Q 048181 171 LNITNDSTGRLLSYNPRSSQVTVLLRNL--TGPAGVAISVDSSFLLVSEFTG-----NRTLKYWLRGPRANSFDI-INF- 241 (310)
Q Consensus 171 ~~~~~~~~G~l~~~d~~~g~~~~~~~~l--~~pnGIa~~~dg~~Lyv~d~~~-----~~I~~~~~~~~~~g~~~~-~~l- 241 (310)
...-.++.+|||.+++.+....-. ..-.|++.-. ..||+.-... ..|.+|++.. ..... ..+
T Consensus 440 ----~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~--~~iYvvGG~~~~~~~~~VE~ydp~~---~~W~~v~~m~ 510 (571)
T KOG4441|consen 440 ----SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN--GKIYVVGGFDGTSALSSVERYDPET---NQWTMVAPMT 510 (571)
T ss_pred ----ccccceEEEEcCCCCceeecCCcccccccceEEEEC--CEEEEECCccCCCccceEEEEcCCC---CceeEcccCc
Confidence 002257999999988776654321 1224566553 3599864432 3477887653 23333 222
Q ss_pred -CCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC
Q 048181 242 -QAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF 282 (310)
Q Consensus 242 -~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~ 282 (310)
+...-|++... |.+|+......+ .....+-.+||+
T Consensus 511 ~~rs~~g~~~~~---~~ly~vGG~~~~---~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 511 SPRSAVGVVVLG---GKLYAVGGFDGN---NNLNTVECYDPE 546 (571)
T ss_pred cccccccEEEEC---CEEEEEecccCc---cccceeEEcCCC
Confidence 22345566664 678876543221 123457777875
No 184
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=92.93 E-value=6.5 Score=35.80 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=31.8
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecC
Q 048181 32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTP 74 (310)
Q Consensus 32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~ 74 (310)
......+|..+++|+++++.-....|++|++..+...+...++
T Consensus 142 D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 142 DYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred CccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 3445667888889997777777899999998766656655444
No 185
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.70 E-value=1.1 Score=42.82 Aligned_cols=102 Identities=17% Similarity=0.078 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC--eEEEEEecCCCCCceeeecCCCCCceeeeCCCCCC
Q 048181 179 GRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN--RTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQ 256 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~--~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG 256 (310)
.++|+++.++++...+..--..--..+|+|||++|.++...++ .|+.+++++.. ..++.+..+.-..=.+.+ ||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~sp--dG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSP--DG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCC--CC
Confidence 5789999888776666553333446789999999988877554 68888887643 222222222111223455 66
Q ss_pred c--EEEEEecCCCCCCCCceeeEEECCCCcEEEEEec
Q 048181 257 T--FWEAAIITRQPAGTPVPIGQRISAFGAVLDTISF 291 (310)
Q Consensus 257 ~--l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~ 291 (310)
. +|+++..++ +.+.+++++|.-...+..
T Consensus 294 ~~ivf~Sdr~G~-------p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 294 SKIVFTSDRGGR-------PQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CEEEEEeCCCCC-------cceEEECCCCCceeEeec
Confidence 4 345555543 456666666554444433
No 186
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=92.60 E-value=4.9 Score=35.72 Aligned_cols=99 Identities=22% Similarity=0.237 Sum_probs=62.8
Q ss_pred hhhhhhhcCCcee---eeecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccC
Q 048181 6 SLFVFVFSLPRMV---FSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCD 82 (310)
Q Consensus 6 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~ 82 (310)
+.+|++|=++..- -++.++.+|+-|. ..+....|++-+..+++...+|.|.+++...+.+.+...
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~---------- 186 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD---------- 186 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEcccCceeeech----------
Confidence 3456666664322 2444566676665 678899999999989999999999999988654433210
Q ss_pred CCccccCCCCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCCC
Q 048181 83 GTTNLDLGPICRRTFGLALHYATRQLYIADAYS-GLLVVGPNG 124 (310)
Q Consensus 83 g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~~ 124 (310)
......-+.|.+. ++...||+.... .-..+|..+
T Consensus 187 -------~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 187 -------EEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred -------hhhcccccccccc-CCcceEEecccCccceeeeccc
Confidence 0112244567775 788888875442 234455444
No 187
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.58 E-value=3.7 Score=39.14 Aligned_cols=143 Identities=10% Similarity=0.055 Sum_probs=78.9
Q ss_pred eeEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 97 FGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
.++.+ ..+|+|+.|-...| |..+|.++. .+...+.+.. ...+-+.+.++++.++++-+..
T Consensus 72 ~s~~f-R~DG~LlaaGD~sG~V~vfD~k~r---~iLR~~~ah~-apv~~~~f~~~d~t~l~s~sDd-------------- 132 (487)
T KOG0310|consen 72 YSVDF-RSDGRLLAAGDESGHVKVFDMKSR---VILRQLYAHQ-APVHVTKFSPQDNTMLVSGSDD-------------- 132 (487)
T ss_pred eEEEe-ecCCeEEEccCCcCcEEEeccccH---HHHHHHhhcc-CceeEEEecccCCeEEEecCCC--------------
Confidence 35667 47999998744445 666775441 1111222111 1124456777666776664432
Q ss_pred CCCceEEEEcCCCCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCC
Q 048181 176 DSTGRLLSYNPRSSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPG 253 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~ 253 (310)
+.+-.+|..+..++.-+ +.-.+-...+++|...+++++-...+.|.-|+.........++ .+.| -+.+..=+
T Consensus 133 ---~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~p--Ve~vl~lp- 206 (487)
T KOG0310|consen 133 ---KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCP--VESVLALP- 206 (487)
T ss_pred ---ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCc--eeeEEEcC-
Confidence 22333444444432111 2223556788999888999999999999999876432222233 3333 24444444
Q ss_pred CCCcEEEEEecC
Q 048181 254 LLQTFWEAAIIT 265 (310)
Q Consensus 254 ~dG~l~va~~~~ 265 (310)
.|.+.+++.++
T Consensus 207 -sgs~iasAgGn 217 (487)
T KOG0310|consen 207 -SGSLIASAGGN 217 (487)
T ss_pred -CCCEEEEcCCC
Confidence 56666666554
No 188
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=92.57 E-value=3.9 Score=35.57 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=73.0
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCC-ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD 112 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad 112 (310)
..-.-|+..|+|.+|.+. ++.+++..+.. ....+.... .....|. -.+=..|.+| .+|-||...
T Consensus 34 ~~~~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~~~~~~~~----~~Ig~g~--------W~~F~~i~~d-~~G~LYaV~ 98 (229)
T PF14517_consen 34 NNFRDIAAGPNGRLYAIR--NDGLYRGSPSSSGGNTWDSGS----KQIGDGG--------WNSFKFIFFD-PTGVLYAVT 98 (229)
T ss_dssp TT-SEEEE-TTS-EEEEE--TTEEEEES---STT--HHHH-----EEEE-S---------GGG-SEEEE--TTS-EEEEE
T ss_pred cccceEEEcCCceEEEEE--CCceEEecCCccCcccccccC----cccccCc--------ccceeEEEec-CCccEEEec
Confidence 445568888999988776 55888873220 011110000 0000000 0122368887 789999776
Q ss_pred CCCcEEEEeCCCCeEEEee----ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE-cCC
Q 048181 113 AYSGLLVVGPNGRLATQLA----TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY-NPR 187 (310)
Q Consensus 113 ~~~gi~~id~~~~~~~~~~----~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~-d~~ 187 (310)
....+++..+.......+. ..+.+...+..+-+..++ +|.||.-++ +|++++. .|.
T Consensus 99 ~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~-~GvLY~i~~------------------dg~~~~~~~p~ 159 (229)
T PF14517_consen 99 PDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGP-NGVLYAITP------------------DGRLYRRYRPD 159 (229)
T ss_dssp TT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-T-TS-EEEEET------------------TE-EEEE---S
T ss_pred cccceeeccCCCccCcchhhccceecccCCCccceEEEeCC-CccEEEEcC------------------CCceEEeCCCC
Confidence 6545777765332212221 111112334455677888 488887553 4567776 332
Q ss_pred CC-------eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 188 SS-------QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 188 ~g-------~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
.+ ...+...+...+--|.++|+|. ||.+ ..++.|+|+...
T Consensus 160 ~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G~lyr~~~p 206 (229)
T PF14517_consen 160 GGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNGKLYRGRPP 206 (229)
T ss_dssp STT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES--
T ss_pred CCCCccccccceeccCCcccceEEeeCCCCc-EEEE-ecCCEEeccCCc
Confidence 21 1111223334567899999986 7877 568889887543
No 189
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=92.39 E-value=7.4 Score=34.37 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=66.5
Q ss_pred CceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
..+..+.+. .+|+++....+.+|.-.|+++-.. .+.+.- | ...+...+.|+ -.+||+..
T Consensus 185 s~VtSlEvs-~dG~ilTia~gssV~Fwdaksf~~---lKs~k~-P-~nV~SASL~P~-k~~fVaGg-------------- 243 (334)
T KOG0278|consen 185 SPVTSLEVS-QDGRILTIAYGSSVKFWDAKSFGL---LKSYKM-P-CNVESASLHPK-KEFFVAGG-------------- 243 (334)
T ss_pred CCCcceeec-cCCCEEEEecCceeEEeccccccc---eeeccC-c-cccccccccCC-CceEEecC--------------
Confidence 345678886 789887766666788788775221 122211 1 11234557774 67888743
Q ss_pred ecCCCceEEEEcCCCCeEEEe-ecCCCCC-ceeEEccCCCEEEEEecCCCeEEE
Q 048181 174 TNDSTGRLLSYNPRSSQVTVL-LRNLTGP-AGVAISVDSSFLLVSEFTGNRTLK 225 (310)
Q Consensus 174 ~~~~~G~l~~~d~~~g~~~~~-~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~ 225 (310)
.++.+|+||=.+|+-... ..+-..| -.+-|+|||. +|.+-+..+.|+-
T Consensus 244 ---ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirl 293 (334)
T KOG0278|consen 244 ---EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRL 293 (334)
T ss_pred ---cceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEE
Confidence 246789998877753322 1222233 5899999997 8998887776543
No 190
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=92.14 E-value=6.8 Score=37.07 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=60.9
Q ss_pred eeEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 97 FGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
..|+|. .+|.-+++....+ |..+|+..-+ -+ ..+.-......|.+.+|. .|...+.-..
T Consensus 393 k~i~Fs-ENGY~Lat~add~~V~lwDLRKl~--n~-kt~~l~~~~~v~s~~fD~-SGt~L~~~g~--------------- 452 (506)
T KOG0289|consen 393 KAISFS-ENGYWLATAADDGSVKLWDLRKLK--NF-KTIQLDEKKEVNSLSFDQ-SGTYLGIAGS--------------- 452 (506)
T ss_pred eEEEec-cCceEEEEEecCCeEEEEEehhhc--cc-ceeeccccccceeEEEcC-CCCeEEeecc---------------
Confidence 478885 6776666555545 8888865321 11 111111223468899998 5766554321
Q ss_pred CCCceEEEEcCCCCeEEE---eecCCCCCceeEEccCCCEEEEEecCCCeEEEE
Q 048181 176 DSTGRLLSYNPRSSQVTV---LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKY 226 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~---~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~ 226 (310)
+=+||.++..+...+. +.+.....+|+.|...- -|++.+...++.++
T Consensus 453 --~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a--q~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 453 --DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA--QYLASTSMDAILRL 502 (506)
T ss_pred --eeEEEEEecccccceeeehhhhcccccceeeecccc--eEEeeccchhheEE
Confidence 1257777755443332 23333467999998764 56677777776554
No 191
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.05 E-value=5.7 Score=37.33 Aligned_cols=111 Identities=14% Similarity=-0.020 Sum_probs=59.4
Q ss_pred CceEEEEcCCCCeEEEeecCC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCC-C-C-ceeeeCCC
Q 048181 178 TGRLLSYNPRSSQVTVLLRNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQA-K-P-HNIKRNPG 253 (310)
Q Consensus 178 ~G~l~~~d~~~g~~~~~~~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g-~-P-dgl~~d~~ 253 (310)
+-.+|.+|..+++++.+.++- ....|..++++.+.||+.. ...+|++++++..+ +..+-.+|. . . ....+++
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e--~~~vy~~p~~~~g~gt~v~n~- 134 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLE--ERVVYEVPDDWKGYGTWVANS- 134 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT----EEEEEE--TTEEEEEEEEE-T-
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCc--EEEEEECCcccccccceeeCC-
Confidence 457999999999998887753 2344888999999886644 34689999997532 222233331 1 1 2333577
Q ss_pred CCCcEEEEEecCCCCC---C-----------CCceeeEEECC-CCcEEEEEecCC
Q 048181 254 LLQTFWEAAIITRQPA---G-----------TPVPIGQRISA-FGAVLDTISFEA 293 (310)
Q Consensus 254 ~dG~l~va~~~~~~~~---~-----------~~~~~v~~~~~-~G~~~~~~~~p~ 293 (310)
|+..+++....+.-. + ..+.+++++|- .|++-.+++...
T Consensus 135 -d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~ 188 (386)
T PF14583_consen 135 -DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD 188 (386)
T ss_dssp -TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred -CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence 899988876654211 1 24566788884 566655555443
No 192
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=1.8 Score=40.14 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=57.9
Q ss_pred ecCCCceEEEEcCCCCeEEEeec--CCCC-CceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeee
Q 048181 174 TNDSTGRLLSYNPRSSQVTVLLR--NLTG-PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKR 250 (310)
Q Consensus 174 ~~~~~G~l~~~d~~~g~~~~~~~--~l~~-pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~ 250 (310)
+....+.|-.||+..++ +++.. -... -..+++.|+|+++|++++ .+.+..||+.+.+.....+.++.|.+..|.+
T Consensus 221 t~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 221 TITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLGCGLKGITGSIRSIHC 298 (412)
T ss_pred EEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeeccccCCccCCcceEEE
Confidence 34456788889987543 33322 1111 246788899999999886 4567888886532211112567788999999
Q ss_pred CCCCCCcEEEEEecCC
Q 048181 251 NPGLLQTFWEAAIITR 266 (310)
Q Consensus 251 d~~~dG~l~va~~~~~ 266 (310)
.+ .+.+...+.--|
T Consensus 299 hp--~~~~las~GLDR 312 (412)
T KOG3881|consen 299 HP--THPVLASCGLDR 312 (412)
T ss_pred cC--CCceEEeeccce
Confidence 98 667777666654
No 193
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=91.99 E-value=2.3 Score=37.01 Aligned_cols=140 Identities=15% Similarity=0.132 Sum_probs=65.4
Q ss_pred EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEee---ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 99 LALHYATRQLYIADAYSGLLVVGPNGRLATQLA---TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 99 la~d~~~g~LyVad~~~gi~~id~~~~~~~~~~---~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
|+.. ++|+||+.... .+++..+.+-...... ..+.......-..|.+++ +|.||.-+.
T Consensus 39 i~~~-P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~-~G~LYaV~~---------------- 99 (229)
T PF14517_consen 39 IAAG-PNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDP-TGVLYAVTP---------------- 99 (229)
T ss_dssp EEE--TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-T-TS-EEEEET----------------
T ss_pred EEEc-CCceEEEEECC-ceEEecCCccCcccccccCcccccCcccceeEEEecC-CccEEEecc----------------
Confidence 5665 78999988744 6777732210001111 011111133445899999 599996443
Q ss_pred CCCceEEEEcCCCC--------eEEEe-ecCCCCCceeEEccCCCEEEEEecCCCeEEEE-EecCCCCCce----ee--e
Q 048181 176 DSTGRLLSYNPRSS--------QVTVL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKY-WLRGPRANSF----DI--I 239 (310)
Q Consensus 176 ~~~G~l~~~d~~~g--------~~~~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~-~~~~~~~g~~----~~--~ 239 (310)
+|.|||..+.+. ..+.+ ..+....+-|-++++|- ||..+. .+++++. .+++. .... .+ .
T Consensus 100 --~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~-dg~~~~~~~p~~~-~~~W~~~s~~v~~ 174 (229)
T PF14517_consen 100 --DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-LYAITP-DGRLYRRYRPDGG-SDRWLSGSGLVGG 174 (229)
T ss_dssp --T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEET-TE-EEEE---SST-T--HHHH-EEEES
T ss_pred --ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-EEEEcC-CCceEEeCCCCCC-CCccccccceecc
Confidence 467777764321 12233 34455567888889985 888874 4477776 43321 1111 11 1
Q ss_pred cCCCCCceeeeCCCCCCcEEEEEec
Q 048181 240 NFQAKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 240 ~l~g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
..-..+..|...+ +|+||.....
T Consensus 175 ~gw~~~~~i~~~~--~g~L~~V~~~ 197 (229)
T PF14517_consen 175 GGWDSFHFIFFSP--DGNLWAVKSN 197 (229)
T ss_dssp SSGGGEEEEEE-T--TS-EEEE-ET
T ss_pred CCcccceEEeeCC--CCcEEEEecC
Confidence 1112466788888 8888877443
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.95 E-value=10 Score=35.10 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=78.8
Q ss_pred eEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccc-eEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181 98 GLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDG-LDVDQGTGVVYFTDASGVYDFRTIVKLNITND 176 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pnd-vavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~ 176 (310)
.+.+ ...||.|+-... |+.+|.++-++ + ..++.-+ ..|++ .|.++..++-|++=++. .
T Consensus 92 ~Vrm--Nr~RLvV~Lee~-IyIydI~~Mkl--L-hTI~t~~-~n~~gl~AlS~n~~n~ylAyp~s--------------~ 150 (391)
T KOG2110|consen 92 AVRM--NRKRLVVCLEES-IYIYDIKDMKL--L-HTIETTP-PNPKGLCALSPNNANCYLAYPGS--------------T 150 (391)
T ss_pred EEEE--ccceEEEEEccc-EEEEeccccee--e-hhhhccC-CCccceEeeccCCCCceEEecCC--------------C
Confidence 3444 578898886554 99999887443 1 2222111 12232 34555445556654322 2
Q ss_pred CCceEEEEcCCCCeEEEeecCC-CCCceeEEccCCCEEEEEecCCCeEEEE-EecCCCCCce--ee-ec-CCCCCceeee
Q 048181 177 STGRLLSYNPRSSQVTVLLRNL-TGPAGVAISVDSSFLLVSEFTGNRTLKY-WLRGPRANSF--DI-IN-FQAKPHNIKR 250 (310)
Q Consensus 177 ~~G~l~~~d~~~g~~~~~~~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~-~~~~~~~g~~--~~-~~-l~g~Pdgl~~ 250 (310)
..|.|+.||..+-+....+.-- .--..|||++||. ++.+-+.+++|.|+ .+.. |.. ++ -+ .+-.---|++
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~---G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPE---GQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCC---ccEeeeeeCCceeeEEEEEEE
Confidence 3588999987654433333211 1236899999997 77888888887665 4421 221 22 11 1212234788
Q ss_pred CCCCCCcEEEEEecC
Q 048181 251 NPGLLQTFWEAAIIT 265 (310)
Q Consensus 251 d~~~dG~l~va~~~~ 265 (310)
++ ++.+..+....
T Consensus 227 s~--ds~~L~~sS~T 239 (391)
T KOG2110|consen 227 SP--DSQFLAASSNT 239 (391)
T ss_pred CC--CCCeEEEecCC
Confidence 88 88866665544
No 195
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=91.38 E-value=8.3 Score=36.87 Aligned_cols=159 Identities=11% Similarity=0.130 Sum_probs=95.7
Q ss_pred EEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCeEEEEECC--Cc-eEEeeeecCCCCccccCCCccccCCCCCCce-eeE
Q 048181 25 TKILFPPKAFGGESIAFEP-VGGAFYTGVADGRILKYQAP--DG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGL 99 (310)
Q Consensus 25 ~~~~~~~~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~--g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gl 99 (310)
-...+.|--.+...+-|-| .+.|+.+...+++|.-++.- ++ +++|. .-..| ..+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~---------------------gH~k~Vrd~ 264 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK---------------------GHRKPVRDA 264 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh---------------------cchhhhhhh
Confidence 3345555444555555666 68888888888888776532 22 22221 01112 245
Q ss_pred EEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181 100 ALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST 178 (310)
Q Consensus 100 a~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~ 178 (310)
++. ..|+=|.+....+ |-..|.++|+...-... + .-|..+...|++-++++.... +
T Consensus 265 ~~s-~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~---~~~~cvkf~pd~~n~fl~G~s-----------------d 321 (503)
T KOG0282|consen 265 SFN-NCGTSFLSASFDRFLKLWDTETGQVLSRFHL--D---KVPTCVKFHPDNQNIFLVGGS-----------------D 321 (503)
T ss_pred hcc-ccCCeeeeeecceeeeeeccccceEEEEEec--C---CCceeeecCCCCCcEEEEecC-----------------C
Confidence 664 5666555544444 66678888875432221 1 246788899963377776543 5
Q ss_pred ceEEEEcCCCCeEEE-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181 179 GRLLSYNPRSSQVTV-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWL 228 (310)
Q Consensus 179 G~l~~~d~~~g~~~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~ 228 (310)
++|..+|..++++.. ....+..-|-|.|-++|+ =|++.+....++.++.
T Consensus 322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~-rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR-RFISSSDDKSVRIWEN 371 (503)
T ss_pred CcEEEEeccchHHHHHHHhhhhheeeeEEccCCc-eEeeeccCccEEEEEc
Confidence 889999988876422 123566779999999987 4666665555554443
No 196
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.00 E-value=12 Score=34.10 Aligned_cols=194 Identities=14% Similarity=0.205 Sum_probs=85.6
Q ss_pred ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181 23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL 101 (310)
Q Consensus 23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~ 101 (310)
+=+++++|-. ....+|+|..+.+-|++.. .+.|++=...|+ +....... ..+...+-..+.+
T Consensus 7 ~W~~v~l~t~-~~l~dV~F~d~~~G~~VG~-~g~il~T~DGG~tW~~~~~~~---------------~~~~~~~l~~I~f 69 (302)
T PF14870_consen 7 SWQQVSLPTD-KPLLDVAFVDPNHGWAVGA-YGTILKTTDGGKTWQPVSLDL---------------DNPFDYHLNSISF 69 (302)
T ss_dssp -EEEEE-S-S-S-EEEEEESSSS-EEEEET-TTEEEEESSTTSS-EE--------------------S-----EEEEEEE
T ss_pred CcEEeecCCC-CceEEEEEecCCEEEEEec-CCEEEEECCCCccccccccCC---------------CccceeeEEEEEe
Confidence 3456666633 3678899986666666664 677877655543 44321100 0011123346666
Q ss_pred ecCCCeEEEEeCCCcEEEEeCCCCeE-EEee--ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181 102 HYATRQLYIADAYSGLLVVGPNGRLA-TQLA--TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST 178 (310)
Q Consensus 102 d~~~g~LyVad~~~gi~~id~~~~~~-~~~~--~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~ 178 (310)
+ +...||+-. .+++....++|+. +.+. ..+++. +..+.... ++.+++... .
T Consensus 70 ~--~~~g~ivG~-~g~ll~T~DgG~tW~~v~l~~~lpgs----~~~i~~l~-~~~~~l~~~------------------~ 123 (302)
T PF14870_consen 70 D--GNEGWIVGE-PGLLLHTTDGGKTWERVPLSSKLPGS----PFGITALG-DGSAELAGD------------------R 123 (302)
T ss_dssp E--TTEEEEEEE-TTEEEEESSTTSS-EE----TT-SS-----EEEEEEEE-TTEEEEEET------------------T
T ss_pred c--CCceEEEcC-CceEEEecCCCCCcEEeecCCCCCCC----eeEEEEcC-CCcEEEEcC------------------C
Confidence 4 456777633 3455455455543 3321 223332 23344333 245544321 2
Q ss_pred ceEEEEcCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCC
Q 048181 179 GRLLSYNPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLL 255 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~d 255 (310)
|.||+-.-....-+.+.. ....-+++..++||+++.| +..+.+++-.-.|.. ..+. ..-...-..|.+++ +
T Consensus 124 G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vav--s~~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~--~ 197 (302)
T PF14870_consen 124 GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAV--SSRGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSP--D 197 (302)
T ss_dssp --EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEE--ETTSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-T--T
T ss_pred CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEE--ECcccEEEEecCCCc--cceEEccCccceehhceecC--C
Confidence 556665443233333322 2233467788899974444 456666654433321 1222 11223456788999 9
Q ss_pred CcEEEEEecC
Q 048181 256 QTFWEAAIIT 265 (310)
Q Consensus 256 G~l~va~~~~ 265 (310)
|+||+...++
T Consensus 198 ~~lw~~~~Gg 207 (302)
T PF14870_consen 198 GNLWMLARGG 207 (302)
T ss_dssp S-EEEEETTT
T ss_pred CCEEEEeCCc
Confidence 9999987654
No 197
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=90.63 E-value=0.52 Score=34.50 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCCceeeEEEecCCCeEEEEeCCCc-EEEEeC
Q 048181 91 PICRRTFGLALHYATRQLYIADAYSG-LLVVGP 122 (310)
Q Consensus 91 ~~~~~P~Gla~d~~~g~LyVad~~~g-i~~id~ 122 (310)
.....|+||++++.+..|||++...+ |..+..
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 45678999999866789999987643 665543
No 198
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.46 E-value=12 Score=33.14 Aligned_cols=175 Identities=12% Similarity=0.121 Sum_probs=93.5
Q ss_pred ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181 23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL 101 (310)
Q Consensus 23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~ 101 (310)
+.+.+.+|-...|+--++. +|.+||--....+|.|++...+.+. ........ ..+. .........=..+|+
T Consensus 59 ~~~~~~Lp~~~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~----~~n~--~~y~~~~~t~iD~Av 130 (250)
T PF02191_consen 59 SSRTYKLPYPWQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAG----YNNR--FPYYWSGYTDIDFAV 130 (250)
T ss_pred CceEEEEeceeccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccc----cccc--cceecCCCceEEEEE
Confidence 3444556644556655554 6899999888999999998865432 11110000 0000 001111112236777
Q ss_pred ecCCCeEEEE---eCCCc---EEEEeCCCCeEEE-eeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181 102 HYATRQLYIA---DAYSG---LLVVGPNGRLATQ-LATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT 174 (310)
Q Consensus 102 d~~~g~LyVa---d~~~g---i~~id~~~~~~~~-~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~ 174 (310)
| +..|||. ....+ |-++|+++-.++. +-+...-+ ..-|..-+ .|-||++++...
T Consensus 131 D--E~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~--~~~naFmv---CGvLY~~~s~~~------------ 191 (250)
T PF02191_consen 131 D--ENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKR--SAGNAFMV---CGVLYATDSYDT------------ 191 (250)
T ss_pred c--CCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCch--hhcceeeE---eeEEEEEEECCC------------
Confidence 6 5568875 22233 6688988755543 22333221 12233333 389999997641
Q ss_pred cCCCce-EEEEcCCCCeEEEee----cCCCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181 175 NDSTGR-LLSYNPRSSQVTVLL----RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWL 228 (310)
Q Consensus 175 ~~~~G~-l~~~d~~~g~~~~~~----~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~ 228 (310)
.+.+ -+.||..+++.+.+. .......-|..+|..+.||+=|.+. +..|++
T Consensus 192 --~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~--~v~Y~v 246 (250)
T PF02191_consen 192 --RDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNGY--QVTYDV 246 (250)
T ss_pred --CCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEECCe--EEEEEE
Confidence 1123 366776655443221 2233456788899888899876543 444443
No 199
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=90.35 E-value=0.66 Score=28.25 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=22.7
Q ss_pred EEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 048181 26 KILFPPKAFGGESIAFEPVGGAFYTGVADG 55 (310)
Q Consensus 26 ~~~~~~~~~~Pegia~d~~G~l~~~d~~~g 55 (310)
++-.+.....+.+|++|++|++|+++..++
T Consensus 5 ~lG~~~~~~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 5 QLGGPGAQDYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred EeCCCCCceeEEEEEECCCCCEEEEEeecC
Confidence 344454445799999999999999987654
No 200
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=90.27 E-value=13 Score=33.09 Aligned_cols=152 Identities=17% Similarity=0.205 Sum_probs=76.9
Q ss_pred cCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCCeEEEE-eCCC---cE
Q 048181 43 PVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATRQLYIA-DAYS---GL 117 (310)
Q Consensus 43 ~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~LyVa-d~~~---gi 117 (310)
|+..++++...++.++.++.+|++....- .|+.. ...-.-+.+ .|-++| |.++ |..+ .+
T Consensus 65 P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~----------~Gk~N-NVDLrygF~LgG~~id-----iaaASdR~~~~i~~ 128 (364)
T COG4247 65 PDKSLVITTVKKAGLRVYDLSGKQLQSVN----------PGKYN-NVDLRYGFQLGGQSID-----IAAASDRQNDKIVF 128 (364)
T ss_pred cCcceEEEeeccCCeEEEecCCCeeeecC----------CCccc-ccccccCcccCCeEEE-----EEecccccCCeEEE
Confidence 45567777777888888888877543211 11100 000001111 122222 2222 2222 26
Q ss_pred EEEeCCCCeEEEeecc--CCCccccCccceEEe--CCCCeEEE--EcCCCccCccceeEeeeecCCCceEEE---EcCCC
Q 048181 118 LVVGPNGRLATQLATG--AEGQAFHFLDGLDVD--QGTGVVYF--TDASGVYDFRTIVKLNITNDSTGRLLS---YNPRS 188 (310)
Q Consensus 118 ~~id~~~~~~~~~~~~--~~g~~~~~pndvavd--~~~G~lyv--td~~~~~~~~~~~~~~~~~~~~G~l~~---~d~~~ 188 (310)
++||++.+.++.+... ........+-|+++- +.+|..|+ ++.. |-+-. +|..+
T Consensus 129 y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~q------------------G~~~Qy~l~d~gn 190 (364)
T COG4247 129 YKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQ------------------GDIAQYKLIDQGN 190 (364)
T ss_pred EEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCC------------------CceeEEEEEecCC
Confidence 7889888776665433 111234456677654 33465554 3322 22222 12223
Q ss_pred CeEEE-eecCCC---CCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 189 SQVTV-LLRNLT---GPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 189 g~~~~-~~~~l~---~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
|++.. +...+. ...|+..+.+-..||+++- .-.||+|...
T Consensus 191 Gkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 191 GKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE-DVAIWKYEAE 234 (364)
T ss_pred ceEcceeeEeeecCCcccceeeccccceEEEeec-cceeeecccC
Confidence 33321 122232 4579999987778999984 5679999765
No 201
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=89.99 E-value=19 Score=34.80 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=64.1
Q ss_pred EEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCC
Q 048181 99 LALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDS 177 (310)
Q Consensus 99 la~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~ 177 (310)
|.+.+....|++.....| |-.+|..+.....-+... +-.-..|++++|-+..|+++-..
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~---HsAP~~gicfspsne~l~vsVG~----------------- 229 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA---HSAPCRGICFSPSNEALLVSVGY----------------- 229 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhh---ccCCcCcceecCCccceEEEecc-----------------
Confidence 444433444555444555 445665543211111111 11124689999976667666432
Q ss_pred CceEEEEcCCCCeEEEeecCCCCC-ceeEEccCCCEEEEEecCCCeEEEEEecCCC
Q 048181 178 TGRLLSYNPRSSQVTVLLRNLTGP-AGVAISVDSSFLLVSEFTGNRTLKYWLRGPR 232 (310)
Q Consensus 178 ~G~l~~~d~~~g~~~~~~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~ 232 (310)
+-+|+.||....+...-+ ....| ..++|+++|. .+++-+.+++|+.||+.+.+
T Consensus 230 Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cceEEEeeccccccccee-eecCCcceeeecCCce-EEEeecCCceEEEEecccCC
Confidence 357888986543221111 01123 5799999995 67888899999999997643
No 202
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.82 E-value=8.8 Score=38.61 Aligned_cols=131 Identities=9% Similarity=0.075 Sum_probs=76.7
Q ss_pred EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181 99 LALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST 178 (310)
Q Consensus 99 la~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~ 178 (310)
++++ .+|..++|-.++.|..+|.+++++.. .....+..-...+++++|+ +...++-...
T Consensus 25 ~~~s-~nG~~L~t~~~d~Vi~idv~t~~~~l--~s~~~ed~d~ita~~l~~d-~~~L~~a~rs----------------- 83 (775)
T KOG0319|consen 25 VAWS-SNGQHLYTACGDRVIIIDVATGSIAL--PSGSNEDEDEITALALTPD-EEVLVTASRS----------------- 83 (775)
T ss_pred eeEC-CCCCEEEEecCceEEEEEccCCceec--ccCCccchhhhheeeecCC-ccEEEEeecc-----------------
Confidence 7786 78877777777779999999887641 1122223344678999995 5555543322
Q ss_pred ceEEEEcCCCCeEEEeecC-CCCC-ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCC
Q 048181 179 GRLLSYNPRSSQVTVLLRN-LTGP-AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNP 252 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~~~-l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~ 252 (310)
+-+-.|...++++...+.. -..| -.++++|.| +|..+-...++|.+.++.+.. .+..+.+.||...-+.+.+
T Consensus 84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~-~th~fkG~gGvVssl~F~~ 157 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGY-CTHSFKGHGGVVSSLLFHP 157 (775)
T ss_pred ceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCE-EEEEecCCCceEEEEEeCC
Confidence 1122233334543322222 1233 589999988 677777778888888887531 2223355555445555554
No 203
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=89.58 E-value=5.6 Score=38.37 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=40.5
Q ss_pred ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCce---eeeCCCCCC-cEEEEEecC
Q 048181 202 AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHN---IKRNPGLLQ-TFWEAAIIT 265 (310)
Q Consensus 202 nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdg---l~~d~~~dG-~l~va~~~~ 265 (310)
..++++||.+ |-++....+-|..+|+... ..+.++.|.+|| |.+.. || +||.+.-.+
T Consensus 513 yALa~spDak-vcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~--dGtklWTGGlDn 573 (705)
T KOG0639|consen 513 YALAISPDAK-VCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISK--DGTKLWTGGLDN 573 (705)
T ss_pred hhhhcCCccc-eeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecC--CCceeecCCCcc
Confidence 4788899998 6667777888888888532 222567778887 55677 88 799875443
No 204
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.41 E-value=26 Score=35.44 Aligned_cols=198 Identities=13% Similarity=0.162 Sum_probs=101.0
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCC-ceEEeee--ecCCCCccccCC-----------CccccCCCCCCceeeE
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAF--TTPTRSKAVCDG-----------TTNLDLGPICRRTFGL 99 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~~~~~~--~~~~~~~~~~~g-----------~~~~~~~~~~~~P~Gl 99 (310)
.+-.+..+..++.++..+..+..|+.+...- +.+.+.. ..++.. ..|++ ........-.+--.|.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d-~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNID-TESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccc-ccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3445566777888888888888888776542 1111110 000000 00000 0000111112223577
Q ss_pred EEecCCCeEEEEeCC-C--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181 100 ALHYATRQLYIADAY-S--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND 176 (310)
Q Consensus 100 a~d~~~g~LyVad~~-~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~ 176 (310)
.+. ++.++++.... . ++|.++..+ ..+. +.| +..-.-|+.+.|. |.-|.|-++ +
T Consensus 458 sFs-Pd~rfLlScSED~svRLWsl~t~s--~~V~---y~G-H~~PVwdV~F~P~-GyYFatas~---------------D 514 (707)
T KOG0263|consen 458 SFS-PDRRFLLSCSEDSSVRLWSLDTWS--CLVI---YKG-HLAPVWDVQFAPR-GYYFATASH---------------D 514 (707)
T ss_pred eec-ccccceeeccCCcceeeeecccce--eEEE---ecC-CCcceeeEEecCC-ceEEEecCC---------------C
Confidence 886 56666665433 2 355554332 2221 122 2222357889995 755555432 3
Q ss_pred CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCC
Q 048181 177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLL 255 (310)
Q Consensus 177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~d 255 (310)
...+||..|- +...+.++..+.--+.+.|+|..++ ..+.+..+.|+..+... ...+++ .+-.+--.-+++.+ +
T Consensus 515 ~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~--G~~VRiF~GH~~~V~al~~Sp--~ 588 (707)
T KOG0263|consen 515 QTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVST--GNSVRIFTGHKGPVTALAFSP--C 588 (707)
T ss_pred ceeeeeeccc-CCchhhhcccccccceEEECCcccc-cccCCCCceEEEEEcCC--CcEEEEecCCCCceEEEEEcC--C
Confidence 4468888876 3556666777777788999999873 34556666666666542 233444 33222234566666 5
Q ss_pred CcEEEE
Q 048181 256 QTFWEA 261 (310)
Q Consensus 256 G~l~va 261 (310)
|...++
T Consensus 589 Gr~LaS 594 (707)
T KOG0263|consen 589 GRYLAS 594 (707)
T ss_pred CceEee
Confidence 544333
No 205
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.33 E-value=1 Score=42.79 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=35.5
Q ss_pred CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC----ceee--------------ecCCCCCceeeeCCCCCC-cEE
Q 048181 199 TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN----SFDI--------------INFQAKPHNIKRNPGLLQ-TFW 259 (310)
Q Consensus 199 ~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g----~~~~--------------~~l~g~Pdgl~~d~~~dG-~l~ 259 (310)
..+..|.+|.|.++|||+....+.|+.||++.+..- ++.+ ..+.|.|.=+.++- || +||
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~--DGkRlY 389 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL--DGKRLY 389 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T--TSSEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc--CCeEEE
Confidence 356899999999999999999999999999876422 1111 12345688888988 99 699
Q ss_pred EEEec
Q 048181 260 EAAII 264 (310)
Q Consensus 260 va~~~ 264 (310)
|+..-
T Consensus 390 vTnSL 394 (461)
T PF05694_consen 390 VTNSL 394 (461)
T ss_dssp EE---
T ss_pred EEeec
Confidence 98543
No 206
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=88.50 E-value=22 Score=33.35 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCCc
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDG 65 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~ 65 (310)
.-.-+++|.|||..+-++..+|.|.-++|..+
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 34568999999998888999999999998854
No 207
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=88.38 E-value=19 Score=32.53 Aligned_cols=157 Identities=13% Similarity=0.127 Sum_probs=85.0
Q ss_pred CCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181 29 FPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL 108 (310)
Q Consensus 29 ~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L 108 (310)
+++.-.+-....+-.|+. ++++..+....-++-+.++....+ ..-.+.-.+|.+.+.+++.
T Consensus 141 l~gHtgylScC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f------------------~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVF------------------HGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecCccceeEEEEEcCCCc-eEecCCCceEEEEEcccceEEEEe------------------cCCcccEEEEecCCCCCCe
Confidence 454444555566655555 667777777777776544332111 1122345577775448999
Q ss_pred EEEeCCCc-EEEEeCCCCe-EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181 109 YIADAYSG-LLVVGPNGRL-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP 186 (310)
Q Consensus 109 yVad~~~g-i~~id~~~~~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~ 186 (310)
||+-.-.. ....|...+. .+.+ .|. -.-.|.+.+.| +|.-|.|.+... .-|+|-+..
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF----~gh-esDINsv~ffP-~G~afatGSDD~---------------tcRlyDlRa 260 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTF----EGH-ESDINSVRFFP-SGDAFATGSDDA---------------TCRLYDLRA 260 (343)
T ss_pred EEecccccceeeeeccCcceeEee----ccc-ccccceEEEcc-CCCeeeecCCCc---------------eeEEEeecC
Confidence 99643222 3334444433 2333 331 23468899999 598888876431 223333322
Q ss_pred CCCeEEEeec--CCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181 187 RSSQVTVLLR--NLTGPAGVAISVDSSFLLVSEFTGNRTLKYW 227 (310)
Q Consensus 187 ~~g~~~~~~~--~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~ 227 (310)
+ .++.+... ....-+.++||..|+.||.. .....+.+.|
T Consensus 261 D-~~~a~ys~~~~~~gitSv~FS~SGRlLfag-y~d~~c~vWD 301 (343)
T KOG0286|consen 261 D-QELAVYSHDSIICGITSVAFSKSGRLLFAG-YDDFTCNVWD 301 (343)
T ss_pred C-cEEeeeccCcccCCceeEEEcccccEEEee-ecCCceeEee
Confidence 2 23332221 12345899999999866554 4455555554
No 208
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.29 E-value=9.4 Score=39.79 Aligned_cols=105 Identities=7% Similarity=-0.002 Sum_probs=66.0
Q ss_pred ccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe-EEEeecCCCCCceeEEccCCCEEEEEecCC
Q 048181 142 LDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-VTVLLRNLTGPAGVAISVDSSFLLVSEFTG 220 (310)
Q Consensus 142 pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~ 220 (310)
.-|++.+| ++.+.++-+. +.++..++..+.+ ++++.+....+-|+.|||-|+ .+.+.+..
T Consensus 132 V~Dv~Wsp-~~~~lvS~s~-----------------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdD 192 (942)
T KOG0973|consen 132 VLDVNWSP-DDSLLVSVSL-----------------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-YFASQSDD 192 (942)
T ss_pred cceeccCC-CccEEEEecc-----------------cceEEEEccccceeeeeeecccccccceEECCccC-eeeeecCC
Confidence 45778888 4887777543 3678888877654 345556667899999999998 34556666
Q ss_pred CeEEEEEecCCCCCceee-----ecCCCCC--ceeeeCCCCCCcEEEEEecCCCCC
Q 048181 221 NRTLKYWLRGPRANSFDI-----INFQAKP--HNIKRNPGLLQTFWEAAIITRQPA 269 (310)
Q Consensus 221 ~~I~~~~~~~~~~g~~~~-----~~l~g~P--dgl~~d~~~dG~l~va~~~~~~~~ 269 (310)
+.|..+..+. -+.... ...++.+ ..+-..+ ||.+.++-++.+.+.
T Consensus 193 rtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSP--DG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 193 RTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSP--DGHHLASPNAVNGGK 244 (942)
T ss_pred ceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCC--CcCeecchhhccCCc
Confidence 6555554332 122111 2233333 3455677 998888877776554
No 209
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=88.00 E-value=14 Score=34.74 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=33.1
Q ss_pred CceEEEEcCCCCeEEEeecCCCC--CceeEEccCCCEEEEEecCCCeEEEEEecCCCCC
Q 048181 178 TGRLLSYNPRSSQVTVLLRNLTG--PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN 234 (310)
Q Consensus 178 ~G~l~~~d~~~g~~~~~~~~l~~--pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g 234 (310)
...||.||.++-..-...+++.+ -..|||++||..|+++.+..-+ ..+.+.....|
T Consensus 320 ~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC-S~vtfe~~elg 377 (434)
T KOG1009|consen 320 KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC-SLVTFEPWELG 377 (434)
T ss_pred cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCce-EEEEEcchhcc
Confidence 45677787654333333455543 3689999999988888765543 22334333344
No 210
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=87.99 E-value=25 Score=33.45 Aligned_cols=139 Identities=14% Similarity=0.201 Sum_probs=74.8
Q ss_pred eeEEEecCCCeEEEEeCCCcEEEE-eCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181 97 FGLALHYATRQLYIADAYSGLLVV-GPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT 174 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~~gi~~i-d~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~ 174 (310)
.++..+ ..|.-+++....+-|.+ |..++.. .++... +.. ..-...+++| +|.|+.|-..
T Consensus 307 ~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s~-v~~ts~~fHp-DgLifgtgt~-------------- 367 (506)
T KOG0289|consen 307 TGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TSD-VEYTSAAFHP-DGLIFGTGTP-------------- 367 (506)
T ss_pred eeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeec--ccc-ceeEEeeEcC-CceEEeccCC--------------
Confidence 477776 45555454344454444 4444432 222221 111 1234678999 5999887643
Q ss_pred cCCCceEEEEcCCCCeEEEeecCCC-CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC--CCCceeeeC
Q 048181 175 NDSTGRLLSYNPRSSQVTVLLRNLT-GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ--AKPHNIKRN 251 (310)
Q Consensus 175 ~~~~G~l~~~d~~~g~~~~~~~~l~-~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~--g~Pdgl~~d 251 (310)
+|.|-.||.+++....-..+-. --..|+|+.+| +.+++.+..+.|..+|+... -......++ ....-+.+|
T Consensus 368 ---d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD 441 (506)
T KOG0289|consen 368 ---DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFD 441 (506)
T ss_pred ---CceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhh--cccceeeccccccceeEEEc
Confidence 4555556654433111111111 22679999887 67777788888888887532 122111121 124558899
Q ss_pred CCCCCcEEEEE
Q 048181 252 PGLLQTFWEAA 262 (310)
Q Consensus 252 ~~~dG~l~va~ 262 (310)
. .|.+.+..
T Consensus 442 ~--SGt~L~~~ 450 (506)
T KOG0289|consen 442 Q--SGTYLGIA 450 (506)
T ss_pred C--CCCeEEee
Confidence 8 88776665
No 211
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.95 E-value=21 Score=32.56 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=55.0
Q ss_pred CccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCC
Q 048181 141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG 220 (310)
Q Consensus 141 ~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~ 220 (310)
..||++++| .|.|-.+-.+. +.+--+|.-.|+...+..--..|.-+.|+|.|.+.++. ..
T Consensus 129 ~Vt~lsiHP-S~KLALsVg~D-----------------~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~--~~ 188 (362)
T KOG0294|consen 129 QVTDLSIHP-SGKLALSVGGD-----------------QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS--GR 188 (362)
T ss_pred ccceeEecC-CCceEEEEcCC-----------------ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE--ec
Confidence 379999999 59998775432 33333333333332222222345569999999966665 45
Q ss_pred CeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEec
Q 048181 221 NRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 221 ~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
++|-.|.++.. ........|..+-.+.+.. .+.|.|+...
T Consensus 189 ~~i~i~q~d~A--~v~~~i~~~~r~l~~~~l~--~~~L~vG~d~ 228 (362)
T KOG0294|consen 189 NKIDIYQLDNA--SVFREIENPKRILCATFLD--GSELLVGGDN 228 (362)
T ss_pred cEEEEEecccH--hHhhhhhccccceeeeecC--CceEEEecCC
Confidence 66666655421 1111022233455666666 5666666444
No 212
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=87.87 E-value=28 Score=33.84 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=27.7
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce
Q 048181 28 LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF 66 (310)
Q Consensus 28 ~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~ 66 (310)
+-+.+ ...-+++|.++|. .+++..+|.|..+++.+..
T Consensus 242 ek~ek-k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 242 EKREK-KFVLCVTFLENGD-VITGDSGGNILIWSKGTNR 278 (626)
T ss_pred ccccc-eEEEEEEEcCCCC-EEeecCCceEEEEeCCCce
Confidence 33444 5677899999999 6677779999999987543
No 213
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=87.66 E-value=24 Score=32.84 Aligned_cols=107 Identities=20% Similarity=0.107 Sum_probs=66.0
Q ss_pred CCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181 31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI 110 (310)
Q Consensus 31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV 110 (310)
+.+.--.++++||-+..|.++..++.|-.+|...+....... .-...-.|+++....-.||-
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt------------------Ghi~~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT------------------GHIETVRGVAVSKRHPYLFS 210 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec------------------chhheeeeeeecccCceEEE
Confidence 445566789999976655555667777777877554321110 11224568999645556766
Q ss_pred EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCC
Q 048181 111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDAS 160 (310)
Q Consensus 111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~ 160 (310)
|-....|-.+|++.++ +...+.| ++...-.+++.| +-++.+|-..
T Consensus 211 ~gedk~VKCwDLe~nk---vIR~YhG-HlS~V~~L~lhP-Tldvl~t~gr 255 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYNK---VIRHYHG-HLSGVYCLDLHP-TLDVLVTGGR 255 (460)
T ss_pred ecCCCeeEEEechhhh---hHHHhcc-ccceeEEEeccc-cceeEEecCC
Confidence 6545557778887654 2334444 455666788888 5778887654
No 214
>PHA02713 hypothetical protein; Provisional
Probab=87.53 E-value=28 Score=34.59 Aligned_cols=94 Identities=7% Similarity=0.068 Sum_probs=51.4
Q ss_pred EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC-CeEEEee
Q 048181 117 LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS-SQVTVLL 195 (310)
Q Consensus 117 i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~-g~~~~~~ 195 (310)
+.++|+++++.+.+...... . ...++++- +|.||+...... . ......+.+|||.+ .+.+.+.
T Consensus 434 ve~YDP~td~W~~v~~m~~~-r--~~~~~~~~--~~~IYv~GG~~~--~---------~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 434 VIRYDTVNNIWETLPNFWTG-T--IRPGVVSH--KDDIYVVCDIKD--E---------KNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred EEEECCCCCeEeecCCCCcc-c--ccCcEEEE--CCEEEEEeCCCC--C---------CccceeEEEecCCCCCCeeEcc
Confidence 77899988766554322111 1 12355555 589999753210 0 00113478999997 5665543
Q ss_pred cCCCC---CceeEEccCCCEEEEEecCCC--eEEEEEec
Q 048181 196 RNLTG---PAGVAISVDSSFLLVSEFTGN--RTLKYWLR 229 (310)
Q Consensus 196 ~~l~~---pnGIa~~~dg~~Lyv~d~~~~--~I~~~~~~ 229 (310)
.++. -.|++.- +| .||+.--..+ .+-+|++.
T Consensus 498 -~m~~~r~~~~~~~~-~~-~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 498 -TTESRLSALHTILH-DN-TIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred -ccCcccccceeEEE-CC-EEEEEeeecceeehhhcCcc
Confidence 3332 2466665 34 5898643333 45666654
No 215
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=87.27 E-value=20 Score=35.83 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=63.9
Q ss_pred eEEEecCCCeEEEEeCC-------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181 98 GLALHYATRQLYIADAY-------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK 170 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~-------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~ 170 (310)
|.+. -+|+||++-+. ..+..+||.+++.+.++.... + ..-.++++. ++.||+--....
T Consensus 422 gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~--R~~~g~a~~--~~~iYvvGG~~~-------- 486 (571)
T KOG4441|consen 422 GVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-R--RSGFGVAVL--NGKIYVVGGFDG-------- 486 (571)
T ss_pred EEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-c--cccceEEEE--CCEEEEECCccC--------
Confidence 5555 48999998542 137889999887655433211 1 122357776 599998754321
Q ss_pred eeeecCCCceEEEEcCCCCeEEEeecCCC--CCceeEEccCCCEEEEEecCC-----CeEEEEEe
Q 048181 171 LNITNDSTGRLLSYNPRSSQVTVLLRNLT--GPAGVAISVDSSFLLVSEFTG-----NRTLKYWL 228 (310)
Q Consensus 171 ~~~~~~~~G~l~~~d~~~g~~~~~~~~l~--~pnGIa~~~dg~~Lyv~d~~~-----~~I~~~~~ 228 (310)
....-++.+|||.+.+.+.+..-.. ..-|++.. ++.||+.--.. ..|-.|++
T Consensus 487 ----~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 487 ----TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred ----CCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCC
Confidence 0011248999999888877642211 22345554 34688875432 24555544
No 216
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.16 E-value=40 Score=34.96 Aligned_cols=69 Identities=13% Similarity=0.366 Sum_probs=40.3
Q ss_pred CCEEEEEeCCCeEEEEECCCceEEeeeecCCCC-----ccccCCCccccCCCCCCceeeEEEe----------------c
Q 048181 45 GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRS-----KAVCDGTTNLDLGPICRRTFGLALH----------------Y 103 (310)
Q Consensus 45 G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~P~Gla~d----------------~ 103 (310)
|+.+|+....++|+.+|...+.+.+........ ...|. |+++. .
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cR---------------Gvay~~~p~~~~~~~~~~~p~~ 258 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCR---------------GVSYYDAPAAAAGPAAPAAPAD 258 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccc---------------ceEEecCCcccccccccccccc
Confidence 344566667889999998866665554221110 01122 33221 1
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEE
Q 048181 104 ATRQLYIADAYSGLLVVGPNGRLAT 128 (310)
Q Consensus 104 ~~g~LyVad~~~gi~~id~~~~~~~ 128 (310)
.+++||+......++.+|.++|+..
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEE
Confidence 2458888766666888888887654
No 217
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=87.09 E-value=9.8 Score=35.49 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=60.5
Q ss_pred ceeeEEEecCCCeE-EEEeCCCcEEEEeCCCC-eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 95 RTFGLALHYATRQL-YIADAYSGLLVVGPNGR-LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 95 ~P~Gla~d~~~g~L-yVad~~~gi~~id~~~~-~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
.+.-.... ++++| ++++...+...++.... +...+...... -..|+.+.+..++-.+.++|..
T Consensus 64 a~~~~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v--~~~~~ai~~~~~~~sv~v~dka------------ 128 (390)
T KOG3914|consen 64 APALVLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV--PKRPTAISFIREDTSVLVADKA------------ 128 (390)
T ss_pred cccccccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEeec--ccCcceeeeeeccceEEEEeec------------
Confidence 34444443 55654 45666655433332221 11112221111 1346667766655666677653
Q ss_pred eecCCCceEEEEcC---CCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 173 ITNDSTGRLLSYNP---RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 173 ~~~~~~G~l~~~d~---~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
|.+|.+|. ..+..+.....+..--.++++||+++|..+|- ...|+..++.
T Consensus 129 ------gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDR-DEkIRvs~yp 181 (390)
T KOG3914|consen 129 ------GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADR-DEKIRVSRYP 181 (390)
T ss_pred ------CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecC-CceEEEEecC
Confidence 33444442 22555556666777789999999998887775 4445554443
No 218
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.15 E-value=26 Score=36.71 Aligned_cols=103 Identities=10% Similarity=0.080 Sum_probs=58.4
Q ss_pred eeEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 97 FGLALHYATRQLYIADA-YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~-~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
..++++ +++.+++.-. .+.|..++..+.+.. +...+ +...+-|+.+|| -|+.+.|-+..+
T Consensus 133 ~Dv~Ws-p~~~~lvS~s~DnsViiwn~~tF~~~---~vl~~-H~s~VKGvs~DP-~Gky~ASqsdDr------------- 193 (942)
T KOG0973|consen 133 LDVNWS-PDDSLLVSVSLDNSVIIWNAKTFELL---KVLRG-HQSLVKGVSWDP-IGKYFASQSDDR------------- 193 (942)
T ss_pred ceeccC-CCccEEEEecccceEEEEccccceee---eeeec-ccccccceEECC-ccCeeeeecCCc-------------
Confidence 356776 5787777543 345888887764322 22333 234677999999 598777655431
Q ss_pred CCCceEEEEcCCCCeEEEeecCC------CCCceeEEccCCCEEEEEecCCC
Q 048181 176 DSTGRLLSYNPRSSQVTVLLRNL------TGPAGVAISVDSSFLLVSEFTGN 221 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~~~~~l------~~pnGIa~~~dg~~Lyv~d~~~~ 221 (310)
.=.+|+.+. .+-.+.+...+ .+-.-+.|||||++|-+....++
T Consensus 194 --tikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 194 --TLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred --eEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 112333221 12222222211 12246789999998887776554
No 219
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=85.94 E-value=29 Score=32.20 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=31.7
Q ss_pred ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCC
Q 048181 23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD 64 (310)
Q Consensus 23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g 64 (310)
...+.++-.....-|.+.|+|.+.+++++..+|.++-+.-..
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence 334444434456788999999999999999999999887553
No 220
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.37 E-value=29 Score=31.58 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=80.3
Q ss_pred CCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181 92 ICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 92 ~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~ 171 (310)
..+...|+.+ ..+..||+|...+++.+|..+-..-+++...... -.-..+++++ +.+-|+++...
T Consensus 127 t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~-~~d~~~v~IS--Gn~AYvA~~d~---------- 191 (370)
T COG5276 127 TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP-GGDTHDVAIS--GNYAYVAWRDG---------- 191 (370)
T ss_pred CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC-CCCceeEEEe--cCeEEEEEeCC----------
Confidence 3355567777 4788999999889888887653333344333221 1123689998 47899987543
Q ss_pred eeecCCCceEEEEcCCCCeEEEeecC--C-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCce
Q 048181 172 NITNDSTGRLLSYNPRSSQVTVLLRN--L-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHN 247 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~~~~~~~~--l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdg 247 (310)
.|..+|-.+-.--++.+. . ....++..+++ +.|+++...+ +..++.+++..-.. + .-.+.-|.+
T Consensus 192 --------GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~eg-vlivd~s~~ssp~~-~gsyet~~p~~ 259 (370)
T COG5276 192 --------GLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEG-VLIVDVSGPSSPTV-FGSYETSNPVS 259 (370)
T ss_pred --------CeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccc-eEEEecCCCCCceE-eeccccCCccc
Confidence 355554332111112221 1 14456666654 4677776554 45566666532111 1 222334555
Q ss_pred e---eeCCCCCCcEEEEEecCC
Q 048181 248 I---KRNPGLLQTFWEAAIITR 266 (310)
Q Consensus 248 l---~~d~~~dG~l~va~~~~~ 266 (310)
+ .+.. ...|++.....
T Consensus 260 ~s~v~Vs~---~~~Yvadga~g 278 (370)
T COG5276 260 ISTVPVSG---EYAYVADGAKG 278 (370)
T ss_pred ccceeccc---ceeeeeccccC
Confidence 5 4543 46788887754
No 221
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.08 E-value=26 Score=30.80 Aligned_cols=119 Identities=12% Similarity=0.134 Sum_probs=68.2
Q ss_pred CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE--
Q 048181 115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT-- 192 (310)
Q Consensus 115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~-- 192 (310)
..+..+|..+|++.. .+.| +....|-+++..+ -.+.++.+- +-++-.+|-.+...+
T Consensus 81 k~v~vwDV~TGkv~R---r~rg-H~aqVNtV~fNee-sSVv~Sgsf-----------------D~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDR---RFRG-HLAQVNTVRFNEE-SSVVASGSF-----------------DSSVRLWDCRSRSFEPI 138 (307)
T ss_pred ceEEEEEcccCeeee---eccc-ccceeeEEEecCc-ceEEEeccc-----------------cceeEEEEcccCCCCcc
Confidence 448888888886532 1222 3445788999874 777776542 123444454333322
Q ss_pred -EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCC-ceeeeCCCCCCcEEEEEec
Q 048181 193 -VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKP-HNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 193 -~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~P-dgl~~d~~~dG~l~va~~~ 264 (310)
++.+-...--.|.++ ++.+|+-+..+++++|++.. |+...+.+ |.| .-+.+.. ||+.-.+...
T Consensus 139 Qildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~---G~l~sDy~-g~pit~vs~s~--d~nc~La~~l 203 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK---GTLSSDYF-GHPITSVSFSK--DGNCSLASSL 203 (307)
T ss_pred chhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec---ceeehhhc-CCcceeEEecC--CCCEEEEeec
Confidence 222222222344444 36889999999999999853 43322223 234 5577888 8976555443
No 222
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=84.98 E-value=3.7 Score=39.13 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=30.4
Q ss_pred cCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC-CeEE----EeecC---------------CC
Q 048181 140 HFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS-SQVT----VLLRN---------------LT 199 (310)
Q Consensus 140 ~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~-g~~~----~~~~~---------------l~ 199 (310)
..+.|+.++.++..|||+.... |.+.+||... ...+ +.+.+ -.
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~-----------------GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLH-----------------GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG 374 (461)
T ss_dssp -----EEE-TTS-EEEEEETTT-----------------TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred CceEeEEEccCCCEEEEEcccC-----------------CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence 3468999999888999998753 5566665321 1111 11111 12
Q ss_pred CCceeEEccCCCEEEEEec
Q 048181 200 GPAGVAISVDSSFLLVSEF 218 (310)
Q Consensus 200 ~pnGIa~~~dg~~Lyv~d~ 218 (310)
.|+=|.+|.||+.|||+.+
T Consensus 375 gPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ----EEE-TTSSEEEEE--
T ss_pred CCCeEEEccCCeEEEEEee
Confidence 5889999999999999976
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=84.70 E-value=34 Score=31.88 Aligned_cols=101 Identities=15% Similarity=0.259 Sum_probs=58.1
Q ss_pred ccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee-cCCCCCceeEEccCCCEEEEEecCC
Q 048181 142 LDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTG 220 (310)
Q Consensus 142 pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~ 220 (310)
..-|...+ +|..++|-+-. +..+..+|++++.-..+. .++..-.=+-|||||..||.+-.
T Consensus 198 Vtsmqwn~-dgt~l~tAS~g----------------sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~-- 258 (445)
T KOG2139|consen 198 VTSMQWNE-DGTILVTASFG----------------SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC-- 258 (445)
T ss_pred eeEEEEcC-CCCEEeecccC----------------cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc--
Confidence 34556666 36666665422 346888899888766655 34444455689999997665533
Q ss_pred CeEEEEE-ecCCCCCceee-ecCCCCCceeeeCCCCCCc-EEEEEecC
Q 048181 221 NRTLKYW-LRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FWEAAIIT 265 (310)
Q Consensus 221 ~~I~~~~-~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~va~~~~ 265 (310)
.++.+++ ... .-+.+. .-.+|+--+-+.++ +|. |..++.+.
T Consensus 259 davfrlw~e~q--~wt~erw~lgsgrvqtacWsp--cGsfLLf~~sgs 302 (445)
T KOG2139|consen 259 DAVFRLWQENQ--SWTKERWILGSGRVQTACWSP--CGSFLLFACSGS 302 (445)
T ss_pred cceeeeehhcc--cceecceeccCCceeeeeecC--CCCEEEEEEcCC
Confidence 3344554 221 112222 22345666777888 884 45555543
No 224
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=84.26 E-value=32 Score=31.19 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=91.2
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-EeCCCc
Q 048181 38 SIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-ADAYSG 116 (310)
Q Consensus 38 gia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad~~~g 116 (310)
-+.|+|+|..+.++-.++.|+-+...+.-+-+... .--.+.-.++.+. ++++..+ |.....
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-----------------kgHsgAVM~l~~~-~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-----------------KGHSGAVMELHGM-RDGSHILSCGTDKT 113 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceeee-----------------ccccceeEeeeec-cCCCEEEEecCCce
Confidence 36788999977777788888888755432222110 0112233467775 5666555 444566
Q ss_pred EEEEeCCCCeEEEeeccCCCccccCccceEEe----------CCCCeEEEEcCCCccCccce--------------eEee
Q 048181 117 LLVVGPNGRLATQLATGAEGQAFHFLDGLDVD----------QGTGVVYFTDASGVYDFRTI--------------VKLN 172 (310)
Q Consensus 117 i~~id~~~~~~~~~~~~~~g~~~~~pndvavd----------~~~G~lyvtd~~~~~~~~~~--------------~~~~ 172 (310)
++.+|.++|+...-... .-.+.|-+... .++|.+=+=|....-..+.+ ..++
T Consensus 114 v~~wD~~tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred EEEEecccceeeehhcc----ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence 88999888764221110 01122222221 12455555555422111111 0122
Q ss_pred eecCCCceEEEEcCCCCeEEEeecCCC-CCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 173 ITNDSTGRLLSYNPRSSQVTVLLRNLT-GPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~-~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
+...=++.|-.+|+..++......+-. --.||.++++|.+ ..+++..+.+.++++.
T Consensus 190 ~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~-llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF-LLSNSMDNTVRVWDVR 246 (338)
T ss_pred eeccccCceeeeccccCcceEEeecccCceeeEEeccCCCc-cccccccceEEEEEec
Confidence 233334556667775455544444332 3479999999984 5688888888887765
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=83.84 E-value=35 Score=33.73 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=62.3
Q ss_pred eEEEecCCCeEEEEeCCCcEEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181 98 GLALHYATRQLYIADAYSGLLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND 176 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~~gi~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~ 176 (310)
.|+++...-.||++-.+..|++++++.|+. .++.... ...|-+-+.+. ..|+.+. .
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-----~~lN~v~in~~-hgLla~G-----------------t 194 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-----GELNVVSINEE-HGLLACG-----------------T 194 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEcccccccccccccc-----ccceeeeecCc-cceEEec-----------------c
Confidence 466654455788877777799999886642 2222111 12344555553 2233322 2
Q ss_pred CCceEEEEcCCCCeE-EEe-----------ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181 177 STGRLLSYNPRSSQV-TVL-----------LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 177 ~~G~l~~~d~~~g~~-~~~-----------~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
.+|.+-.+|+.+... ..+ .+....+..|.|+.||-+ +-+-+.++.|+.||+...
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEEcccC
Confidence 245666666643221 111 122345678999988754 345678899999999643
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.69 E-value=15 Score=34.27 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=73.6
Q ss_pred eEEEccC--CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCCeEEEEeCC
Q 048181 38 SIAFEPV--GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATRQLYIADAY 114 (310)
Q Consensus 38 gia~d~~--G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~LyVad~~ 114 (310)
++.|-+. .+.|.+...-+.++.|++.-+.+.++. +++ ..+| ..+...+....||+++..
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~---------------fd~---~E~~is~~~l~p~gn~Iy~gn~~ 268 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ---------------FDF---LENPISSTGLTPSGNFIYTGNTK 268 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccCcceeE---------------ecc---ccCcceeeeecCCCcEEEEeccc
Confidence 3444433 455666667788888887744443331 111 1122 234555456778999888
Q ss_pred CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe
Q 048181 115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL 194 (310)
Q Consensus 115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~ 194 (310)
..+..||..+++.- ...+.|. -..+.++.++| ++.+..+-.- +-.|-.+|.++.+ +
T Consensus 269 g~l~~FD~r~~kl~--g~~~kg~-tGsirsih~hp-~~~~las~GL-----------------DRyvRIhD~ktrk---l 324 (412)
T KOG3881|consen 269 GQLAKFDLRGGKLL--GCGLKGI-TGSIRSIHCHP-THPVLASCGL-----------------DRYVRIHDIKTRK---L 324 (412)
T ss_pred chhheecccCceee--ccccCCc-cCCcceEEEcC-CCceEEeecc-----------------ceeEEEeecccch---h
Confidence 78999998876542 2222221 23567899998 4666554321 1124445655422 2
Q ss_pred ecCC---CCCceeEEccCCC
Q 048181 195 LRNL---TGPAGVAISVDSS 211 (310)
Q Consensus 195 ~~~l---~~pnGIa~~~dg~ 211 (310)
+... ..+|+|.+.++-+
T Consensus 325 l~kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 325 LHKVYVKSRLTFILLRDDVN 344 (412)
T ss_pred hhhhhhhccccEEEecCCcc
Confidence 2221 3678998876543
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=82.96 E-value=5.1 Score=38.93 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=38.7
Q ss_pred CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181 200 GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 200 ~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
.+|.++|++||++| .+-+..+.++.|+++... ...+ ....|.-=.+++.+ ||.+.+.-..
T Consensus 292 ~in~f~FS~DG~~L-A~VSqDGfLRvF~fdt~e--Llg~mkSYFGGLLCvcWSP--DGKyIvtGGE 352 (636)
T KOG2394|consen 292 SINEFAFSPDGKYL-ATVSQDGFLRIFDFDTQE--LLGVMKSYFGGLLCVCWSP--DGKYIVTGGE 352 (636)
T ss_pred cccceeEcCCCceE-EEEecCceEEEeeccHHH--HHHHHHhhccceEEEEEcC--CccEEEecCC
Confidence 67999999999965 556678889999886421 1111 12223344566777 8877666443
No 228
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=82.67 E-value=27 Score=36.45 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=18.0
Q ss_pred ceeeEEECCCCcEEEEEecCCCcccc
Q 048181 273 VPIGQRISAFGAVLDTISFEAQYSTT 298 (310)
Q Consensus 273 ~~~v~~~~~~G~~~~~~~~p~~~~~~ 298 (310)
|-+++.-|+.||++..|..|.|+.+.
T Consensus 530 he~~lvads~gklv~~v~ap~gytfd 555 (912)
T TIGR02171 530 HERLLVADSKGKLVRAVAAPAGYTFD 555 (912)
T ss_pred eeEEEEecCCCchhhhccCCCCcccc
Confidence 34667777777777777777777543
No 229
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=82.43 E-value=35 Score=30.23 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=62.0
Q ss_pred eEEEecCCCeEEEEeC-CCcEEEEeCCCCeEE-Eee--cc-CCC------ccccCccceEEeCCCCeEEEEcCCCccCcc
Q 048181 98 GLALHYATRQLYIADA-YSGLLVVGPNGRLAT-QLA--TG-AEG------QAFHFLDGLDVDQGTGVVYFTDASGVYDFR 166 (310)
Q Consensus 98 Gla~d~~~g~LyVad~-~~gi~~id~~~~~~~-~~~--~~-~~g------~~~~~pndvavd~~~G~lyvtd~~~~~~~~ 166 (310)
|.++- +|.||.--. ...|.++|+.++.+. ... .. ..+ .+.+ --|+|+|+ ..||+-=...
T Consensus 73 G~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t-~iD~AvDE--~GLWvIYat~----- 142 (250)
T PF02191_consen 73 GHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYT-DIDFAVDE--NGLWVIYATE----- 142 (250)
T ss_pred CeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCc-eEEEEEcC--CCEEEEEecC-----
Confidence 55663 788887443 346999999987654 211 10 110 0111 13788886 3477631110
Q ss_pred ceeEeeeecCCCceEEEEcCCCCeEEEeec-CCCCC-ceeEEccCCCEEEEEecCC---CeE-EEEEec
Q 048181 167 TIVKLNITNDSTGRLLSYNPRSSQVTVLLR-NLTGP-AGVAISVDSSFLLVSEFTG---NRT-LKYWLR 229 (310)
Q Consensus 167 ~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~-~l~~p-nGIa~~~dg~~Lyv~d~~~---~~I-~~~~~~ 229 (310)
+...+=.|-++|+.+.+++..+. .+..+ -|=||---| .||++++.. .+| +.||+.
T Consensus 143 -------~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCG-vLY~~~s~~~~~~~I~yafDt~ 203 (250)
T PF02191_consen 143 -------DNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCG-VLYATDSYDTRDTEIFYAFDTY 203 (250)
T ss_pred -------CCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeEee-EEEEEEECCCCCcEEEEEEECC
Confidence 00111246788998877765543 33322 244555557 599998865 444 456654
No 230
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=81.93 E-value=2.1 Score=26.03 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=17.4
Q ss_pred CCceeeeCCCCCCcEEEEEecC
Q 048181 244 KPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 244 ~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
.+.+|++|+ +|++||+-...
T Consensus 14 ~~~~IavD~--~GNiYv~G~T~ 33 (38)
T PF06739_consen 14 YGNGIAVDS--NGNIYVTGYTN 33 (38)
T ss_pred eEEEEEECC--CCCEEEEEeec
Confidence 488999999 99999997654
No 231
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.29 E-value=52 Score=31.49 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=45.7
Q ss_pred CccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeec--CCCCCceeEEccCCCEEEEEec
Q 048181 141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR--NLTGPAGVAISVDSSFLLVSEF 218 (310)
Q Consensus 141 ~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~--~l~~pnGIa~~~dg~~Lyv~d~ 218 (310)
+.|.+++-+ .-+++.+.+..+ .=+||.+...-..++.+.+ -..+-|.|+|+++|+.|++.--
T Consensus 382 Witsla~i~-~sdL~asGS~~G---------------~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 382 WITSLAVIP-GSDLLASGSWSG---------------CVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred ceeeeEecc-cCceEEecCCCC---------------ceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence 567788877 466766655431 1256666543223333221 1236699999999998888866
Q ss_pred CCCeEEEEEec
Q 048181 219 TGNRTLKYWLR 229 (310)
Q Consensus 219 ~~~~I~~~~~~ 229 (310)
..+|+-|.+..
T Consensus 446 kEhRlGRW~~~ 456 (479)
T KOG0299|consen 446 KEHRLGRWWCL 456 (479)
T ss_pred cccccceeeEe
Confidence 67777666543
No 232
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=80.84 E-value=46 Score=30.56 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=28.5
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEEC
Q 048181 25 TKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQA 62 (310)
Q Consensus 25 ~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~ 62 (310)
++|+|. +-..+|+-.+.|||+.++++.-+|-|-.++-
T Consensus 206 r~IKFg-~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny 242 (508)
T KOG0275|consen 206 RSIKFG-QKSHVECARFSPDGQYLVSGSVDGFIEVWNY 242 (508)
T ss_pred hheecc-cccchhheeeCCCCceEeeccccceeeeehh
Confidence 456666 3468999999999997888877887776654
No 233
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=79.96 E-value=81 Score=32.86 Aligned_cols=161 Identities=12% Similarity=0.155 Sum_probs=85.0
Q ss_pred CCCCCCcceEEEccC-CCEEEEEe-CCCeEEEEECC-Cce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181 30 PPKAFGGESIAFEPV-GGAFYTGV-ADGRILKYQAP-DGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT 105 (310)
Q Consensus 30 ~~~~~~Pegia~d~~-G~l~~~d~-~~g~I~r~~~~-g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~ 105 (310)
.|+...|.-+.+... .++++.+- ....|+++|.+ |++ ..|...- ++ .+......-.+-.+ ..
T Consensus 477 ~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~--------~~----~v~~~~p~~K~aql--t~ 542 (794)
T PF08553_consen 477 KGKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHD--------DI----PVVDIAPDSKFAQL--TN 542 (794)
T ss_pred CCcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCC--------Cc----ceeEeccccccccc--CC
Confidence 455566877776643 56666664 45789999988 443 3343210 00 00000000001111 12
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEEee---ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181 106 RQLYIADAYSGLLVVGPNGRLATQLA---TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL 182 (310)
Q Consensus 106 g~LyVad~~~gi~~id~~~~~~~~~~---~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~ 182 (310)
...|++-..++++++|+.-..-..+. ..+. .-+....+|.+. +|.|-|+.. .|.|-
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~--~~~~Fs~~aTt~-~G~iavgs~------------------~G~IR 601 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS--SKNNFSCFATTE-DGYIAVGSN------------------KGDIR 601 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccc--cCCCceEEEecC-CceEEEEeC------------------CCcEE
Confidence 34566666677999997531111111 1111 112234667777 588877654 36666
Q ss_pred EEcCCCCeEEEeecCCCCC-ceeEEccCCCEEEEEecCCCeEEEEE
Q 048181 183 SYNPRSSQVTVLLRNLTGP-AGVAISVDSSFLLVSEFTGNRTLKYW 227 (310)
Q Consensus 183 ~~d~~~g~~~~~~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~ 227 (310)
.||.-+.+.+..+.++.-| -||.++.||++|+.+ ...-|.-++
T Consensus 602 Lyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT--c~tyLlLi~ 645 (794)
T PF08553_consen 602 LYDRLGKRAKTALPGLGDPIIGIDVTADGKWILAT--CKTYLLLID 645 (794)
T ss_pred eecccchhhhhcCCCCCCCeeEEEecCCCcEEEEe--ecceEEEEE
Confidence 6675444455566666666 699999999965543 333444444
No 234
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.28 E-value=47 Score=29.74 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=17.8
Q ss_pred CCEEEEEeCCCeEEEEECCCceEE
Q 048181 45 GGAFYTGVADGRILKYQAPDGFTD 68 (310)
Q Consensus 45 G~l~~~d~~~g~I~r~~~~g~~~~ 68 (310)
..++|.+...+++..+++..+..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~ 46 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI 46 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE
Confidence 466788888888888998855433
No 235
>PHA02713 hypothetical protein; Provisional
Probab=79.04 E-value=72 Score=31.75 Aligned_cols=156 Identities=12% Similarity=0.171 Sum_probs=81.4
Q ss_pred eEEEecCCCeEEEEeCC-------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181 98 GLALHYATRQLYIADAY-------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK 170 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~-------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~ 170 (310)
+.++ -++.|||.-+. ..+.++|+.++....+... .. +-... .+++- +|.||+-.....
T Consensus 298 ~~a~--l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~-~R~~~-~~~~~--~g~IYviGG~~~-------- 362 (557)
T PHA02713 298 ASAI--VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IK-NRCRF-SLAVI--DDTIYAIGGQNG-------- 362 (557)
T ss_pred EEEE--ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cc-hhhce-eEEEE--CCEEEEECCcCC--------
Confidence 5555 37899998542 1278999988765444322 11 11111 34444 589998754221
Q ss_pred eeeecCCCceEEEEcCCCCeEEEeecCCCCC---ceeEEccCCCEEEEEecC-----------------------CCeEE
Q 048181 171 LNITNDSTGRLLSYNPRSSQVTVLLRNLTGP---AGVAISVDSSFLLVSEFT-----------------------GNRTL 224 (310)
Q Consensus 171 ~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~p---nGIa~~~dg~~Lyv~d~~-----------------------~~~I~ 224 (310)
......+.+|||.+.+.+.+. .++.| -+++. -+| .||+.--. ...+.
T Consensus 363 ----~~~~~sve~Ydp~~~~W~~~~-~mp~~r~~~~~~~-~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 435 (557)
T PHA02713 363 ----TNVERTIECYTMGDDKWKMLP-DMPIALSSYGMCV-LDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVI 435 (557)
T ss_pred ----CCCCceEEEEECCCCeEEECC-CCCcccccccEEE-ECC-EEEEEeCCCcccccccccccccccccccccccceEE
Confidence 011236899999887665543 23222 12332 244 58986321 24588
Q ss_pred EEEecCCCCCceee-ecCC--CCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCC
Q 048181 225 KYWLRGPRANSFDI-INFQ--AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFG 283 (310)
Q Consensus 225 ~~~~~~~~~g~~~~-~~l~--g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G 283 (310)
+|++.. ...+. ..++ ...-++++- +|.|||........ .....+-+|||+-
T Consensus 436 ~YDP~t---d~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~--~~~~~ve~Ydp~~ 489 (557)
T PHA02713 436 RYDTVN---NIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEK--NVKTCIFRYNTNT 489 (557)
T ss_pred EECCCC---CeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCC--ccceeEEEecCCC
Confidence 888653 23333 3332 112244443 57999885432100 0112467899874
No 236
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=78.69 E-value=57 Score=30.40 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=62.5
Q ss_pred CceeeE-EEecCCCeEEEEeC---CCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccce
Q 048181 94 RRTFGL-ALHYATRQLYIADA---YSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTI 168 (310)
Q Consensus 94 ~~P~Gl-a~d~~~g~LyVad~---~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~ 168 (310)
.+|.|+ |+.+...+-|+|-. ..| |+.+|..+-+...... . +-...--+|+++ +|.+..|-+..
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-a---H~~~lAalafs~-~G~llATASeK------- 194 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-A---HKGPLAALAFSP-DGTLLATASEK------- 194 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-e---cCCceeEEEECC-CCCEEEEeccC-------
Confidence 456665 34434555566532 233 8888866532211111 1 112345799999 59998876543
Q ss_pred eEeeeecCCCceEEEEc--CCCCeEEEeecCCC--CCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 169 VKLNITNDSTGRLLSYN--PRSSQVTVLLRNLT--GPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 169 ~~~~~~~~~~G~l~~~d--~~~g~~~~~~~~l~--~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
|+|.|+- ++..++..+..+.. .-..|+|++|+. ++.+.+.+..|..|.++
T Consensus 195 ----------GTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 195 ----------GTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLE 248 (391)
T ss_pred ----------ceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEec
Confidence 4444432 11122333333332 225899999998 55666778888888775
No 237
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=78.26 E-value=2.4 Score=22.80 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=13.0
Q ss_pred CceeeeCCCCCCcEEEEEe
Q 048181 245 PHNIKRNPGLLQTFWEAAI 263 (310)
Q Consensus 245 Pdgl~~d~~~dG~l~va~~ 263 (310)
...|..|+ +|+||++..
T Consensus 7 I~~i~~D~--~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDS--DGNLWIGTY 23 (24)
T ss_dssp EEEEEE-T--TSCEEEEET
T ss_pred EEEEEEcC--CcCEEEEeC
Confidence 45688999 999999864
No 238
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=76.78 E-value=7.1 Score=25.93 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=28.9
Q ss_pred ceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEe
Q 048181 246 HNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTIS 290 (310)
Q Consensus 246 dgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~ 290 (310)
..+++.+ ||+|.++-..... .......++|+++||.+...+.
T Consensus 4 ~~~~~q~--DGkIlv~G~~~~~-~~~~~~~l~Rln~DGsLDttFg 45 (55)
T TIGR02608 4 YAVAVQS--DGKILVAGYVDNS-SGNNDFVLARLNADGSLDTTFG 45 (55)
T ss_pred EEEEECC--CCcEEEEEEeecC-CCcccEEEEEECCCCCccCCcC
Confidence 3578888 9999988754210 0012356999999999887763
No 239
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=76.45 E-value=78 Score=30.81 Aligned_cols=70 Identities=7% Similarity=-0.005 Sum_probs=36.1
Q ss_pred eEEEEEecCCCCCceee---ecC-------CCCCceeeeCCCCC-CcEEEEEecCCCCC--CCCceeeEEECCCC-cEEE
Q 048181 222 RTLKYWLRGPRANSFDI---INF-------QAKPHNIKRNPGLL-QTFWEAAIITRQPA--GTPVPIGQRISAFG-AVLD 287 (310)
Q Consensus 222 ~I~~~~~~~~~~g~~~~---~~l-------~g~Pdgl~~d~~~d-G~l~va~~~~~~~~--~~~~~~v~~~~~~G-~~~~ 287 (310)
|+.+|.++.. .++.+. .+. ...-.+...-+ + |++.+.......-. .+..+.++.+++.+ +++-
T Consensus 386 r~v~Y~Ide~-~~T~~~vw~y~~~~g~~~yS~~~s~aq~l~--n~gn~li~~g~~~~~~~~~~~~~~i~ev~~~~~~v~~ 462 (477)
T PF05935_consen 386 RAVEYRIDEN-KMTVEQVWEYGKPRGNEFYSPIVSSAQYLP--NKGNTLITSGMAGLFSNGKPSKGIIIEVDPETKEVVF 462 (477)
T ss_dssp EEEEEEEETT-TTEEEEEEEESGGGGGGG--SS--EEEEET--TTTEEEEEEEEETTTSTTSEEEEEEEEEETTT--EEE
T ss_pred eEEEEEecCC-CceEEEEEEeCCCCCCCccCCcceeeEEec--CCCCEEEEeCcccccccCCCCCceEEEEEcCCCEEEE
Confidence 6777887753 344433 111 12234455555 6 88888766542110 01123577888765 5666
Q ss_pred EEecCCC
Q 048181 288 TISFEAQ 294 (310)
Q Consensus 288 ~~~~p~~ 294 (310)
.+.++..
T Consensus 463 e~~~~~~ 469 (477)
T PF05935_consen 463 ELTIPSN 469 (477)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 6666643
No 240
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=76.25 E-value=69 Score=30.11 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=60.6
Q ss_pred eEEEecCCCeE-EEE-eC-CC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181 98 GLALHYATRQL-YIA-DA-YS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 98 Gla~d~~~g~L-yVa-d~-~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~ 171 (310)
+..+. ++|+. .++ +. +. .+..+|.++|+.. ...+.... ...++..+++..+|.+.........
T Consensus 128 ~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--~d~i~~~~---~~~~~W~~d~~~~~y~~~~~~~~~~----- 196 (414)
T PF02897_consen 128 GFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFL--PDGIENPK---FSSVSWSDDGKGFFYTRFDEDQRTS----- 196 (414)
T ss_dssp EEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEE--EEEEEEEE---SEEEEECTTSSEEEEEECSTTTSS------
T ss_pred eeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCc--CCcccccc---cceEEEeCCCCEEEEEEeCcccccc-----
Confidence 46675 55654 333 33 22 2788899888542 22222111 1227777753455555443210000
Q ss_pred eeecCCCceEEEEcCCCCeE--EEeecCCCCC---ceeEEccCCCEEEEEecC--C-CeEEEEEecC
Q 048181 172 NITNDSTGRLLSYNPRSSQV--TVLLRNLTGP---AGVAISVDSSFLLVSEFT--G-NRTLKYWLRG 230 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~~--~~~~~~l~~p---nGIa~~~dg~~Lyv~d~~--~-~~I~~~~~~~ 230 (310)
.....-+|++....+... ..+.+.-..+ -++..++|+++|++.... . ..++.++...
T Consensus 197 --~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 197 --DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp --CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred --cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 000023577777655432 2444433333 388999999998885543 3 5688888764
No 241
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=75.90 E-value=56 Score=28.81 Aligned_cols=167 Identities=15% Similarity=0.098 Sum_probs=78.5
Q ss_pred CcceEEEccCCCEE-EEE--eCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181 35 GGESIAFEPVGGAF-YTG--VADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA 111 (310)
Q Consensus 35 ~Pegia~d~~G~l~-~~d--~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa 111 (310)
.++.+++.++|..+ ++. ....+++....++....+. .......-.++ .+|.+|+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---------------------~g~~l~~PS~d-~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---------------------TGGSLTRPSWD-PDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---------------------cCCcccccccc-CCCCEEEE
Confidence 58889999998743 444 3445566665554433221 01122233677 56999998
Q ss_pred eCCCcE-EEE-eCCCCeEEEeeccCCCcccc-CccceEEeCCCCeEEE-EcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181 112 DAYSGL-LVV-GPNGRLATQLATGAEGQAFH-FLDGLDVDQGTGVVYF-TDASGVYDFRTIVKLNITNDSTGRLLSYNPR 187 (310)
Q Consensus 112 d~~~gi-~~i-d~~~~~~~~~~~~~~g~~~~-~pndvavd~~~G~lyv-td~~~~~~~~~~~~~~~~~~~~G~l~~~d~~ 187 (310)
+..... ..+ +..++....+.-... ... ....+++++++-++-+ ...... .......+....+|.-..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~v~~~--~~~~~I~~l~vSpDG~RvA~v~~~~~~---~~v~va~V~r~~~g~~~~l--- 154 (253)
T PF10647_consen 83 DDGSGGVRVVRDSASGTGEPVEVDWP--GLRGRITALRVSPDGTRVAVVVEDGGG---GRVYVAGVVRDGDGVPRRL--- 154 (253)
T ss_pred EcCCCceEEEEecCCCcceeEEeccc--ccCCceEEEEECCCCcEEEEEEecCCC---CeEEEEEEEeCCCCCccee---
Confidence 765432 222 222233222211111 111 4568889986334433 211100 0000011112222200000
Q ss_pred CCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEE-EEecCC
Q 048181 188 SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLK-YWLRGP 231 (310)
Q Consensus 188 ~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~-~~~~~~ 231 (310)
+...+...........++|.+++..++++......++. +..+|.
T Consensus 155 ~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 155 TGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred ccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence 01111222234456899999998766666666666766 666654
No 242
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=75.73 E-value=57 Score=28.87 Aligned_cols=86 Identities=8% Similarity=0.183 Sum_probs=53.6
Q ss_pred ceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181 95 RTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT 174 (310)
Q Consensus 95 ~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~ 174 (310)
.-+.|-+|+..+.|+.|-....++.+|.++|+++.... |. --+..-++--..++.| +.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r---GH-tDYvH~vv~R~~~~qi------------------ls 173 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR---GH-TDYVHSVVGRNANGQI------------------LS 173 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc---CC-cceeeeeeecccCcce------------------ee
Confidence 34688898888999888655559999999998765432 21 1122233321112333 34
Q ss_pred cCCCceEEEEcCCCCeEEEeecCCCCCc
Q 048181 175 NDSTGRLLSYNPRSSQVTVLLRNLTGPA 202 (310)
Q Consensus 175 ~~~~G~l~~~d~~~g~~~~~~~~l~~pn 202 (310)
...+|.+-.+|.++++-..+++....||
T Consensus 174 G~EDGtvRvWd~kt~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 174 GAEDGTVRVWDTKTQKHVSMIEPYKNPN 201 (325)
T ss_pred cCCCccEEEEeccccceeEEeccccChh
Confidence 4557888888888877666666554444
No 243
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=75.72 E-value=70 Score=29.88 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCeEEEeecCCCC-C-ceeEEccCCCEEEEEec------CCCeEEEEEec
Q 048181 179 GRLLSYNPRSSQVTVLLRNLTG-P-AGVAISVDSSFLLVSEF------TGNRTLKYWLR 229 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~~~l~~-p-nGIa~~~dg~~Lyv~d~------~~~~I~~~~~~ 229 (310)
..+++||+.+.+.+.+. .++. + .+.++..-++.|||.-- ....++.+.++
T Consensus 189 ~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~ 246 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFT 246 (376)
T ss_pred ceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEec
Confidence 46999999888776543 2332 1 24333332345888532 22345555553
No 244
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=75.38 E-value=26 Score=34.15 Aligned_cols=105 Identities=17% Similarity=0.089 Sum_probs=50.8
Q ss_pred ceEEEEcCCCCeEEEeecCCCCCce-eEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCC----CCceeeeCC
Q 048181 179 GRLLSYNPRSSQVTVLLRNLTGPAG-VAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQA----KPHNIKRNP 252 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~~~l~~pnG-Ia~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g----~Pdgl~~d~ 252 (310)
...+.+|.+ |.++-.......... +-.-++|..++... +++..+++.|. ... -.+++ .-..+...+
T Consensus 128 ~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---~~~~e~D~~G~----v~~~~~l~~~~~~~HHD~~~l~ 199 (477)
T PF05935_consen 128 SYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---NRLYEIDLLGK----VIWEYDLPGGYYDFHHDIDELP 199 (477)
T ss_dssp EEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB---TEEEEE-TT------EEEEEE--TTEE-B-S-EEE-T
T ss_pred ceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC---CceEEEcCCCC----EEEeeecCCcccccccccEECC
Confidence 457777765 666543332222221 66778887544443 78888887653 211 33332 235678888
Q ss_pred CCCCcEEEEEecCCCC---C--CCCceeeEEECCCCcEEEEEecCC
Q 048181 253 GLLQTFWEAAIITRQP---A--GTPVPIGQRISAFGAVLDTISFEA 293 (310)
Q Consensus 253 ~~dG~l~va~~~~~~~---~--~~~~~~v~~~~~~G~~~~~~~~p~ 293 (310)
+|++.+........ . ......++.+|++|+++..++.-+
T Consensus 200 --nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d 243 (477)
T PF05935_consen 200 --NGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFD 243 (477)
T ss_dssp --TS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGG
T ss_pred --CCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHH
Confidence 99877665521100 0 012356899999999999988753
No 245
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=75.20 E-value=68 Score=29.47 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=36.3
Q ss_pred CCceEEEEcCCCCeEEEeecCCCCC-ceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 177 STGRLLSYNPRSSQVTVLLRNLTGP-AGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 177 ~~G~l~~~d~~~g~~~~~~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
.+|+|..||-.|-.+..+...-..| ..++||+||+ .+++.+....|..+|+.
T Consensus 43 ~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 43 ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEecc
Confidence 3688888887765544333332333 7999999998 56677777777777775
No 246
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=75.07 E-value=69 Score=30.87 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=24.3
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCC
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPD 64 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g 64 (310)
.+|.-+-+..+|+.+...-..|-+-.+|-..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t 160 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT 160 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc
Confidence 5899999999998777777777777776543
No 247
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=74.97 E-value=63 Score=28.99 Aligned_cols=156 Identities=11% Similarity=0.002 Sum_probs=86.4
Q ss_pred CCCcceEEEccCCCEEEEEeCCCeEEEEECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181 33 AFGGESIAFEPVGGAFYTGVADGRILKYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA 111 (310)
Q Consensus 33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa 111 (310)
-..-+++||.|.|+++-+...+..+.-+... +.++.++.. +.....-..+++. .+|+++.+
T Consensus 61 krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-----------------EGHEnEVK~Vaws-~sG~~LAT 122 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-----------------EGHENEVKCVAWS-ASGNYLAT 122 (312)
T ss_pred hheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-----------------eccccceeEEEEc-CCCCEEEE
Confidence 3567899999999977777788877766544 335443321 1122344578996 67777664
Q ss_pred -eCCCc--EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC-
Q 048181 112 -DAYSG--LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR- 187 (310)
Q Consensus 112 -d~~~g--i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~- 187 (310)
..... |+.++. +.+....+ .+.+ +..-.-.+..+| +..|.|+-+..+ +=++|+-+++
T Consensus 123 CSRDKSVWiWe~de-ddEfec~a-VL~~-HtqDVK~V~WHP-t~dlL~S~SYDn---------------TIk~~~~~~dd 183 (312)
T KOG0645|consen 123 CSRDKSVWIWEIDE-DDEFECIA-VLQE-HTQDVKHVIWHP-TEDLLFSCSYDN---------------TIKVYRDEDDD 183 (312)
T ss_pred eeCCCeEEEEEecC-CCcEEEEe-eecc-ccccccEEEEcC-CcceeEEeccCC---------------eEEEEeecCCC
Confidence 33344 566663 33444322 2221 222234677888 577888866431 1245555532
Q ss_pred CCeEEEeecCCC-CCceeEEccCCCEEEEE-ecCCCeEEE
Q 048181 188 SSQVTVLLRNLT-GPAGVAISVDSSFLLVS-EFTGNRTLK 225 (310)
Q Consensus 188 ~g~~~~~~~~l~-~pnGIa~~~dg~~Lyv~-d~~~~~I~~ 225 (310)
.-.....+++-. ---.++|++.|..|.-+ |-.+-+||+
T Consensus 184 dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 184 DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred CeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 112222222221 23588999999755433 334456676
No 248
>PHA02790 Kelch-like protein; Provisional
Probab=74.92 E-value=86 Score=30.50 Aligned_cols=98 Identities=14% Similarity=-0.021 Sum_probs=54.9
Q ss_pred CCCeEEEEeCC----CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCc
Q 048181 104 ATRQLYIADAY----SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG 179 (310)
Q Consensus 104 ~~g~LyVad~~----~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G 179 (310)
-+|+|||.-+. ..+.++|+++++-+.+.. ..- +... ..+++- +|.||+.. |
T Consensus 361 ~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~-~r~~-~~~~~~--~~~IYv~G--------------------G 415 (480)
T PHA02790 361 INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYY-PHYK-SCALVF--GRRLFLVG--------------------R 415 (480)
T ss_pred ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCC-cccc-ceEEEE--CCEEEEEC--------------------C
Confidence 37999997432 236788998876554322 111 1111 133333 58999863 3
Q ss_pred eEEEEcCCCCeEEEeecCCCCC---ceeEEccCCCEEEEEecC-----CCeEEEEEec
Q 048181 180 RLLSYNPRSSQVTVLLRNLTGP---AGVAISVDSSFLLVSEFT-----GNRTLKYWLR 229 (310)
Q Consensus 180 ~l~~~d~~~g~~~~~~~~l~~p---nGIa~~~dg~~Lyv~d~~-----~~~I~~~~~~ 229 (310)
...+||+++++.+.+.. +..| .|++.- +| .|||.--. ...|.+|++.
T Consensus 416 ~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~-~~-~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 416 NAEFYCESSNTWTLIDD-PIYPRDNPELIIV-DN-KLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred ceEEecCCCCcEeEcCC-CCCCccccEEEEE-CC-EEEEECCcCCCcccceEEEEECC
Confidence 46678888777765542 3322 355554 34 48886321 2456677664
No 249
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=74.91 E-value=98 Score=31.16 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCC
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPD 64 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g 64 (310)
..-|+++|.+.|+ +|+.-.+|.|..+|+..
T Consensus 70 rsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 70 RSIESLAWAEGGR-LFSSGLSGSITEWDLHT 99 (691)
T ss_pred CceeeEEEccCCe-EEeecCCceEEEEeccc
Confidence 5689999996666 67777899999999874
No 250
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=74.74 E-value=82 Score=30.21 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=42.1
Q ss_pred CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCCCCCceeeeCCCCCCc-EEEEEec
Q 048181 200 GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQAKPHNIKRNPGLLQT-FWEAAII 264 (310)
Q Consensus 200 ~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~g~Pdgl~~d~~~dG~-l~va~~~ 264 (310)
+-+++|..|..+ |+.+-+.+++|+...+... .....+ ..+.|+...|++.. +|. ||++..-
T Consensus 382 Witsla~i~~sd-L~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~--sgk~ivagiGk 446 (479)
T KOG0299|consen 382 WITSLAVIPGSD-LLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSN--SGKRIVAGIGK 446 (479)
T ss_pred ceeeeEecccCc-eEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEcc--CCCEEEEeccc
Confidence 557899999765 8888888887765555421 122333 34568889999999 997 7777543
No 251
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=74.20 E-value=25 Score=34.84 Aligned_cols=149 Identities=9% Similarity=0.100 Sum_probs=79.8
Q ss_pred CcceEEEccCCCEEEEEeC----CCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181 35 GGESIAFEPVGGAFYTGVA----DGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI 110 (310)
Q Consensus 35 ~Pegia~d~~G~l~~~d~~----~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV 110 (310)
.-..+.|++.|. |++.+. +.+|+........+.. .+....+.|.-..|++..-.|+|
T Consensus 523 ~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~sQ~------------------PF~kskG~vq~v~FHPs~p~lfV 583 (733)
T KOG0650|consen 523 SIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRKSQS------------------PFRKSKGLVQRVKFHPSKPYLFV 583 (733)
T ss_pred ccceeeeecCCc-eEEEeccCCCcceEEEEecccccccC------------------chhhcCCceeEEEecCCCceEEE
Confidence 456789999998 666542 3444443333212111 12234456778889877889999
Q ss_pred EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC-
Q 048181 111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS- 189 (310)
Q Consensus 111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g- 189 (310)
|... .|..+|+..+++. -+...+ ......|++++.+.+|++... ++++.-+|.+-.
T Consensus 584 aTq~-~vRiYdL~kqelv--KkL~tg--~kwiS~msihp~GDnli~gs~------------------d~k~~WfDldlss 640 (733)
T KOG0650|consen 584 ATQR-SVRIYDLSKQELV--KKLLTG--SKWISSMSIHPNGDNLILGSY------------------DKKMCWFDLDLSS 640 (733)
T ss_pred Eecc-ceEEEehhHHHHH--HHHhcC--CeeeeeeeecCCCCeEEEecC------------------CCeeEEEEcccCc
Confidence 8544 4888887653321 111222 345678999996556766543 245655654311
Q ss_pred -eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEE
Q 048181 190 -QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKY 226 (310)
Q Consensus 190 -~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~ 226 (310)
..+.+.-.-..-..+++++.-. ||.+-+..+.+.+|
T Consensus 641 kPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 641 KPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVF 677 (733)
T ss_pred chhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEE
Confidence 1111111111224566665543 55555555655555
No 252
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.04 E-value=40 Score=34.31 Aligned_cols=109 Identities=11% Similarity=0.043 Sum_probs=61.5
Q ss_pred eeEEEecCCCeEEEEeCCCcEEEEeCCCC-eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 97 FGLALHYATRQLYIADAYSGLLVVGPNGR-LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~~gi~~id~~~~-~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
+.|.+. +++.|+-+.....+...++... -+..+. +-.+..-+++.|.+.+.|++.+-
T Consensus 373 LDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~------HndfVTcVaFnPvDDryFiSGSL--------------- 430 (712)
T KOG0283|consen 373 LDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFS------HNDFVTCVAFNPVDDRYFISGSL--------------- 430 (712)
T ss_pred eecccc-cCCeeEeccccccEEeecCCCcceeeEEe------cCCeeEEEEecccCCCcEeeccc---------------
Confidence 345564 5566655544443333343332 233332 22456678899987888888653
Q ss_pred CCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 176 DSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
+|++-.++....++..+.+--..-..+++.|||+. .|.-+.++.++.|+..+
T Consensus 431 --D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 431 --DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEG 482 (712)
T ss_pred --ccceEEeecCcCeeEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccC
Confidence 23333333323444333332235578999999985 55566777777777654
No 253
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=74.04 E-value=77 Score=29.56 Aligned_cols=138 Identities=11% Similarity=0.032 Sum_probs=68.8
Q ss_pred eEEEecCCCeEEEEeCCCc-EEEEeCCCCeEE-EeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 98 GLALHYATRQLYIADAYSG-LLVVGPNGRLAT-QLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~-~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
-+.+. .+|.++++-.-.| |+.+..+++..+ .+....++ .-=|..+|. +.++++.
T Consensus 111 ~~~Fs-hdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~d-----ieWl~WHp~-a~illAG----------------- 166 (399)
T KOG0296|consen 111 CCSFS-HDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVED-----IEWLKWHPR-AHILLAG----------------- 166 (399)
T ss_pred EEEEc-cCceEEEecCCCccEEEEEcccCceEEEeecccCc-----eEEEEeccc-ccEEEee-----------------
Confidence 45564 5777765522233 555555554332 22211111 111345553 5555443
Q ss_pred CCCceEEEEcCCC-CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ec-CCCCCceeeeC
Q 048181 176 DSTGRLLSYNPRS-SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--IN-FQAKPHNIKRN 251 (310)
Q Consensus 176 ~~~G~l~~~d~~~-g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~-l~g~Pdgl~~d 251 (310)
..+|.+|.+...+ +..+++...-..-+-=.|.|||+.++... ..+.|+++++. .|.... .+ ....-..+.+.
T Consensus 167 ~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-~dgti~~Wn~k---tg~p~~~~~~~e~~~~~~~~~~ 242 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY-DDGTIIVWNPK---TGQPLHKITQAEGLELPCISLN 242 (399)
T ss_pred cCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe-cCceEEEEecC---CCceeEEecccccCcCCccccc
Confidence 3468888887655 34444433222223345889999765554 47888888764 344322 10 01112345566
Q ss_pred CCCCCcEEEEEecC
Q 048181 252 PGLLQTFWEAAIIT 265 (310)
Q Consensus 252 ~~~dG~l~va~~~~ 265 (310)
. +|.+.+++...
T Consensus 243 ~--~~~~~~~g~~e 254 (399)
T KOG0296|consen 243 L--AGSTLTKGNSE 254 (399)
T ss_pred c--ccceeEeccCC
Confidence 6 66665555443
No 254
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=73.72 E-value=87 Score=30.06 Aligned_cols=185 Identities=10% Similarity=0.072 Sum_probs=93.2
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCc
Q 048181 37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSG 116 (310)
Q Consensus 37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~g 116 (310)
..++-+++|.+++.+...+.||-+....+....... .-=..-.-|.+. .+|.++++....|
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~------------------aHYQ~ITcL~fs-~dgs~iiTgskDg 145 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS------------------AHYQSITCLKFS-DDGSHIITGSKDG 145 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHH------------------hhccceeEEEEe-CCCcEEEecCCCc
Confidence 367777889988888789999998877543210000 000112246774 7888888866655
Q ss_pred -EEEEeC------CC-CeEEEeeccCCCccccCccceEEeCCC---CeEEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181 117 -LLVVGP------NG-RLATQLATGAEGQAFHFLDGLDVDQGT---GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN 185 (310)
Q Consensus 117 -i~~id~------~~-~~~~~~~~~~~g~~~~~pndvavd~~~---G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d 185 (310)
|+.+.. .. +....+ ..+.+. -....|+.++. + .++|-+ ..+-.+-.+|
T Consensus 146 ~V~vW~l~~lv~a~~~~~~~p~-~~f~~H-tlsITDl~ig~-Gg~~~rl~Ta------------------S~D~t~k~wd 204 (476)
T KOG0646|consen 146 AVLVWLLTDLVSADNDHSVKPL-HIFSDH-TLSITDLQIGS-GGTNARLYTA------------------SEDRTIKLWD 204 (476)
T ss_pred cEEEEEEEeecccccCCCccce-eeeccC-cceeEEEEecC-CCccceEEEe------------------cCCceEEEEE
Confidence 433321 11 111110 011111 11233555554 2 223222 1222333344
Q ss_pred CCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCC---CCc------ee---eecCCC-----CCcee
Q 048181 186 PRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR---ANS------FD---IINFQA-----KPHNI 248 (310)
Q Consensus 186 ~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~---~g~------~~---~~~l~g-----~Pdgl 248 (310)
...|.+-.-+.--..++.+++||-+..+|+ -+..+.|+...+..-. .+. .+ +..+.| .-..|
T Consensus 205 lS~g~LLlti~fp~si~av~lDpae~~~yi-Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 205 LSLGVLLLTITFPSSIKAVALDPAERVVYI-GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL 283 (476)
T ss_pred eccceeeEEEecCCcceeEEEcccccEEEe-cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence 444543222222235689999999886665 4677888887765321 110 00 011112 23568
Q ss_pred eeCCCCCCcEEEEEec
Q 048181 249 KRNPGLLQTFWEAAII 264 (310)
Q Consensus 249 ~~d~~~dG~l~va~~~ 264 (310)
++.. ||++.++-..
T Consensus 284 ais~--DgtlLlSGd~ 297 (476)
T KOG0646|consen 284 AIST--DGTLLLSGDE 297 (476)
T ss_pred EEec--CccEEEeeCC
Confidence 8888 8887776443
No 255
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=73.70 E-value=14 Score=21.60 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=25.0
Q ss_pred CCCCCcceEEEccCCCEEEEEeCCCeEEEEE
Q 048181 31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQ 61 (310)
Q Consensus 31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~ 61 (310)
+.-....++++.++++.+++...++.|..++
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3345688999999999888888889887664
No 256
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.57 E-value=1.2e+02 Score=31.07 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=79.4
Q ss_pred CcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181 35 GGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA 113 (310)
Q Consensus 35 ~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~ 113 (310)
+..+++|.|. .+.|+.+..+++|+-++-....++.- ..|. .--..+++- ++|...|.-.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W--------~Dl~-----------~lITAvcy~-PdGk~avIGt 470 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW--------NDLR-----------DLITAVCYS-PDGKGAVIGT 470 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEee--------hhhh-----------hhheeEEec-cCCceEEEEE
Confidence 5668999985 56566677888888776443333221 1111 122356664 5566555544
Q ss_pred CCc-EEEEeCCCCeEEEe--eccCCCc--cccCccceEEeCCC-CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181 114 YSG-LLVVGPNGRLATQL--ATGAEGQ--AFHFLDGLDVDQGT-GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR 187 (310)
Q Consensus 114 ~~g-i~~id~~~~~~~~~--~~~~~g~--~~~~pndvavd~~~-G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~ 187 (310)
..| ...|+..+.+...- ...-.++ .-....|+-+.|.+ ..+.||-. +-+|-.||..
T Consensus 471 ~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn------------------DSrIRI~d~~ 532 (712)
T KOG0283|consen 471 FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN------------------DSRIRIYDGR 532 (712)
T ss_pred eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC------------------CCceEEEecc
Confidence 444 44555554332210 0000010 11123445544421 24666643 3456666653
Q ss_pred CCeEEEeecCCC---CCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 188 SSQVTVLLRNLT---GPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 188 ~g~~~~~~~~l~---~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
+..+.....++. ...--.|+.||++|.. -+..+.||..+.+.
T Consensus 533 ~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs-~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 533 DKDLVHKFKGFRNTSSQISASFSSDGKHIVS-ASEDSWVYIWKNDS 577 (712)
T ss_pred chhhhhhhcccccCCcceeeeEccCCCEEEE-eecCceEEEEeCCC
Confidence 333322223332 3345678899997654 44778877776543
No 257
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=72.24 E-value=97 Score=29.92 Aligned_cols=142 Identities=12% Similarity=0.156 Sum_probs=82.2
Q ss_pred CceeeEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 94 RRTFGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
..-.+|++. .+|.++++-...| +..++..++.+.++..- . .|. -.+.-.. .|+...+-
T Consensus 236 kdVT~L~Wn-~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-k-gPI---~slKWnk-~G~yilS~-------------- 294 (524)
T KOG0273|consen 236 KDVTSLDWN-NDGTLLATGSEDGEARIWNKDGNLISTLGQH-K-GPI---FSLKWNK-KGTYILSG-------------- 294 (524)
T ss_pred CCcceEEec-CCCCeEEEeecCcEEEEEecCchhhhhhhcc-C-Cce---EEEEEcC-CCCEEEec--------------
Confidence 445689996 7899988766666 44456666554443211 1 121 2355555 35544432
Q ss_pred eecCCCceEEEEcCCCCeEEEeecCCCCC-ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeC
Q 048181 173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGP-AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRN 251 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d 251 (310)
.-+|+...+|..+|++....+--..| -.|.|-.+. =|++....++|++|.++.. .....+.+-.+-...|..+
T Consensus 295 ---~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 ---GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred ---cCCccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCC-CcceeeecccCceEEEEEC
Confidence 23577888888778776544433344 345554443 4778888888988888753 1222223333445667777
Q ss_pred CCCCCcEEEEEec
Q 048181 252 PGLLQTFWEAAII 264 (310)
Q Consensus 252 ~~~dG~l~va~~~ 264 (310)
+ .|.|..++..
T Consensus 369 ~--tg~LLaS~Sd 379 (524)
T KOG0273|consen 369 P--TGSLLASCSD 379 (524)
T ss_pred C--CCceEEEecC
Confidence 7 7777766554
No 258
>smart00284 OLF Olfactomedin-like domains.
Probab=72.10 E-value=72 Score=28.37 Aligned_cols=113 Identities=17% Similarity=0.220 Sum_probs=61.9
Q ss_pred eEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCC----cccc------CccceEEeCCCCeEEEEcCCCccCcc
Q 048181 98 GLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATGAEG----QAFH------FLDGLDVDQGTGVVYFTDASGVYDFR 166 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g----~~~~------~pndvavd~~~G~lyvtd~~~~~~~~ 166 (310)
|..+- +|.||.--.. ..|+++|+.++.+.... .+++ ..+. .=-|+|+|+ +| ||+-=..
T Consensus 78 G~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~-~Lp~a~y~~~~~Y~~~~~sdiDlAvDE-~G-LWvIYat------ 146 (255)
T smart00284 78 GVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEP-LLNGAGYNNRFPYAWGGFSDIDLAVDE-NG-LWVIYAT------ 146 (255)
T ss_pred cEEEE--CceEEEEecCCccEEEEECCCCcEEEEE-ecCccccccccccccCCCccEEEEEcC-Cc-eEEEEec------
Confidence 55663 7999985443 45999999987653211 1111 0111 113888996 34 7763111
Q ss_pred ceeEeeeecCCCce--EEEEcCCCCeEEEeec-CCCCC-ceeEEccCCCEEEEEec---CCCeE-EEEEecC
Q 048181 167 TIVKLNITNDSTGR--LLSYNPRSSQVTVLLR-NLTGP-AGVAISVDSSFLLVSEF---TGNRT-LKYWLRG 230 (310)
Q Consensus 167 ~~~~~~~~~~~~G~--l~~~d~~~g~~~~~~~-~l~~p-nGIa~~~dg~~Lyv~d~---~~~~I-~~~~~~~ 230 (310)
...+|. |-++||.+-+++..++ .+..+ -|=||---| .||++++ ...+| +.||...
T Consensus 147 --------~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCG-vLY~~~s~~~~~~~I~yayDt~t 209 (255)
T smart00284 147 --------EQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMICG-ILYVTRSLGSKGEKVFYAYDTNT 209 (255)
T ss_pred --------cCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEee-EEEEEccCCCCCcEEEEEEECCC
Confidence 011243 4589998887766554 33222 244444446 4999986 33444 4566553
No 259
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=72.07 E-value=48 Score=34.05 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=36.9
Q ss_pred cCCCCCCcee-eEEEecCCCeEEEE-eCCCcEEEEeCCCCeEEEeeccC-------CCccccCccceEEeCCCCeE
Q 048181 88 DLGPICRRTF-GLALHYATRQLYIA-DAYSGLLVVGPNGRLATQLATGA-------EGQAFHFLDGLDVDQGTGVV 154 (310)
Q Consensus 88 ~~~~~~~~P~-Gla~d~~~g~LyVa-d~~~gi~~id~~~~~~~~~~~~~-------~g~~~~~pndvavd~~~G~l 154 (310)
.+.+..+.|. ++.+. +++.+|.. -..+.|..+...+-++......+ ...+-.++.++.+||..+.+
T Consensus 286 qfLPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 286 QFLPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred ccccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 3456777775 88886 78888753 34456777765443322111111 11133456788899854443
No 260
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=71.59 E-value=84 Score=28.92 Aligned_cols=143 Identities=14% Similarity=0.200 Sum_probs=79.4
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC-CeEEE
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT-RQLYI 110 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~-g~LyV 110 (310)
.+.....+.++|+.+++...+|.|..++...+. .+|... ...-.-+.+.+-+++ ..+.|
T Consensus 349 Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~------------------~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL------------------GTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC------------------CCcccceeEEEcCCCCceEEE
Confidence 345556777888877777778888777765321 122100 011111233332333 35667
Q ss_pred EeCCCcEEEEeCCCCeEEEeecc-CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181 111 ADAYSGLLVVGPNGRLATQLATG-AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS 189 (310)
Q Consensus 111 ad~~~gi~~id~~~~~~~~~~~~-~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g 189 (310)
|+..+.++.++.++.-++.+... -+|.. |. ..+++|++..+|... .++.+|.|.-.+|
T Consensus 411 CNrsntv~imn~qGQvVrsfsSGkREgGd--Fi-~~~lSpkGewiYcig------------------ED~vlYCF~~~sG 469 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQGQVVRSFSSGKREGGD--FI-NAILSPKGEWIYCIG------------------EDGVLYCFSVLSG 469 (508)
T ss_pred EcCCCeEEEEeccceEEeeeccCCccCCc--eE-EEEecCCCcEEEEEc------------------cCcEEEEEEeecC
Confidence 88777788899887655555322 12222 22 345677544455432 2467888877677
Q ss_pred eEEEeec-CCCCCceeEEccCCCEEEEE
Q 048181 190 QVTVLLR-NLTGPAGVAISVDSSFLLVS 216 (310)
Q Consensus 190 ~~~~~~~-~l~~pnGIa~~~dg~~Lyv~ 216 (310)
+++.... .-.-+-||+-+|-.+ |+.+
T Consensus 470 ~LE~tl~VhEkdvIGl~HHPHqN-llAs 496 (508)
T KOG0275|consen 470 KLERTLPVHEKDVIGLTHHPHQN-LLAS 496 (508)
T ss_pred ceeeeeecccccccccccCcccc-hhhh
Confidence 6654332 112467888888877 4444
No 261
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=71.39 E-value=78 Score=30.39 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=70.9
Q ss_pred cCCceeeeecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCC
Q 048181 13 SLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLG 90 (310)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~ 90 (310)
..|+..|+-|++...++--.. ++ .+.+ +|+...+..+.-++...+.. .+.
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~-Gg------~~~r-l~TaS~D~t~k~wdlS~g~LLlti~-------------------- 215 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGS-GG------TNAR-LYTASEDRTIKLWDLSLGVLLLTIT-------------------- 215 (476)
T ss_pred ccceeeeccCcceeEEEEecC-CC------ccce-EEEecCCceEEEEEeccceeeEEEe--------------------
Confidence 357888888888776665221 11 2444 66766677777777664432 222
Q ss_pred CCCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCC--eEE----E---e----eccCCCc-cccCccceEEeCCCCeEEE
Q 048181 91 PICRRTFGLALHYATRQLYIADAYSGLLVVGPNGR--LAT----Q---L----ATGAEGQ-AFHFLDGLDVDQGTGVVYF 156 (310)
Q Consensus 91 ~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~--~~~----~---~----~~~~~g~-~~~~pndvavd~~~G~lyv 156 (310)
....+..+++|+.+-++||......|+.++..+- +.. . . .....|. .-....-++++. +|.+.+
T Consensus 216 -fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLl 293 (476)
T KOG0646|consen 216 -FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLL 293 (476)
T ss_pred -cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEE
Confidence 1124568899976777887544433665553211 100 0 0 0001111 001334578887 488877
Q ss_pred EcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181 157 TDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ 190 (310)
Q Consensus 157 td~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~ 190 (310)
+.. .+|.+..+|..+.+
T Consensus 294 SGd-----------------~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 294 SGD-----------------EDGKVCVWDIYSKQ 310 (476)
T ss_pred eeC-----------------CCCCEEEEecchHH
Confidence 643 35778888876543
No 262
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=71.37 E-value=40 Score=33.20 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=56.5
Q ss_pred ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181 23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH 102 (310)
Q Consensus 23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d 102 (310)
++.+++++. .+.+.++.++...++.+..+|.|.-++...+.+..+ ...-.|.-++++
T Consensus 252 svtsipL~s---~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--------------------ka~~~P~~iaWH 308 (545)
T PF11768_consen 252 SVTSIPLPS---QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--------------------KAEFIPTLIAWH 308 (545)
T ss_pred EEEEEecCC---cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--------------------eecccceEEEEc
Confidence 556677775 578899999988899999999999999876554433 122358889998
Q ss_pred cCCCeEEEEeCC-CcEEEEeCCCC
Q 048181 103 YATRQLYIADAY-SGLLVVGPNGR 125 (310)
Q Consensus 103 ~~~g~LyVad~~-~gi~~id~~~~ 125 (310)
++|.+++.-.. ..+..+|..-+
T Consensus 309 -p~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 309 -PDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred -CCCcEEEEEcCCceEEEEEeecC
Confidence 67776654444 34777776543
No 263
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.74 E-value=99 Score=29.42 Aligned_cols=98 Identities=13% Similarity=0.139 Sum_probs=49.2
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCc--eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCc
Q 048181 39 IAFEPVGGAFYTGVADGRILKYQAPDG--FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSG 116 (310)
Q Consensus 39 ia~d~~G~l~~~d~~~g~I~r~~~~g~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~g 116 (310)
+...++|.++.++. .|.+++-..+|. +.... .+......++.+. .+|.+|++....+
T Consensus 244 v~~~~dG~~~~vg~-~G~~~~s~d~G~~~W~~~~-------------------~~~~~~l~~v~~~-~dg~l~l~g~~G~ 302 (398)
T PLN00033 244 VNRSPDGDYVAVSS-RGNFYLTWEPGQPYWQPHN-------------------RASARRIQNMGWR-ADGGLWLLTRGGG 302 (398)
T ss_pred EEEcCCCCEEEEEC-CccEEEecCCCCcceEEec-------------------CCCccceeeeeEc-CCCCEEEEeCCce
Confidence 34556666555543 556666555543 23221 1222334577775 7889998865555
Q ss_pred EEEEeCCCCeEE---EeeccCCCccccCccceEEeCCCCeEEEEcC
Q 048181 117 LLVVGPNGRLAT---QLATGAEGQAFHFLDGLDVDQGTGVVYFTDA 159 (310)
Q Consensus 117 i~~id~~~~~~~---~~~~~~~g~~~~~pndvavd~~~G~lyvtd~ 159 (310)
+++-+.++ +.. .+........-..+.++...+ ++.+|++-.
T Consensus 303 l~~S~d~G-~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G~ 346 (398)
T PLN00033 303 LYVSKGTG-LTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAGG 346 (398)
T ss_pred EEEecCCC-CcccccceeecccCCCCcceEEEEEcC-CCcEEEEEC
Confidence 65544333 211 121110000112356777776 478887654
No 264
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=70.66 E-value=72 Score=27.82 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=38.3
Q ss_pred CccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCC
Q 048181 141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG 220 (310)
Q Consensus 141 ~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~ 220 (310)
....+++|| .|++.++..... ...+...+++-.+.+|-|.+. --..+-|+|.- +.+.+-+..
T Consensus 233 avaav~vdp-sgrll~sg~~ds------sc~lydirg~r~iq~f~phsa----------dir~vrfsp~a-~yllt~syd 294 (350)
T KOG0641|consen 233 AVAAVAVDP-SGRLLASGHADS------SCMLYDIRGGRMIQRFHPHSA----------DIRCVRFSPGA-HYLLTCSYD 294 (350)
T ss_pred eeEEEEECC-CcceeeeccCCC------ceEEEEeeCCceeeeeCCCcc----------ceeEEEeCCCc-eEEEEeccc
Confidence 345688999 599988754210 000001111112333333322 22567788854 455566677
Q ss_pred CeEEEEEecCC
Q 048181 221 NRTLKYWLRGP 231 (310)
Q Consensus 221 ~~I~~~~~~~~ 231 (310)
..|..-++.|.
T Consensus 295 ~~ikltdlqgd 305 (350)
T KOG0641|consen 295 MKIKLTDLQGD 305 (350)
T ss_pred ceEEEeecccc
Confidence 77777777654
No 265
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=69.94 E-value=1.1e+02 Score=30.99 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=40.8
Q ss_pred ccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE-EEeecCCCCCceeEEccCCCEEEEEe
Q 048181 139 FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV-TVLLRNLTGPAGVAISVDSSFLLVSE 217 (310)
Q Consensus 139 ~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~-~~~~~~l~~pnGIa~~~dg~~Lyv~d 217 (310)
+...+|+++-|++-.+.++- ..+++.||+..|.. .++...-.--+-+|++.||+ .|.+-
T Consensus 12 ~hci~d~afkPDGsqL~lAA-------------------g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG 71 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAA-------------------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASG 71 (1081)
T ss_pred ccchheeEECCCCceEEEec-------------------CCEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccC
Confidence 44678999999633343331 24799999876643 22322223458999999997 66655
Q ss_pred cCCCeEE
Q 048181 218 FTGNRTL 224 (310)
Q Consensus 218 ~~~~~I~ 224 (310)
.....|.
T Consensus 72 ~aDK~VI 78 (1081)
T KOG1538|consen 72 SADKSVI 78 (1081)
T ss_pred CCceeEE
Confidence 5444433
No 266
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=68.99 E-value=1e+02 Score=28.94 Aligned_cols=111 Identities=12% Similarity=0.098 Sum_probs=59.6
Q ss_pred CceeeEEEecCCCeEEEEeCCCcEEEEeCCC---CeEEEeeccCCCccccCccceEEeCCCCeEEEE-cCCCccCcccee
Q 048181 94 RRTFGLALHYATRQLYIADAYSGLLVVGPNG---RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFT-DASGVYDFRTIV 169 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~---~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvt-d~~~~~~~~~~~ 169 (310)
.+|..+.+...+-.+.|+|....++.+|.-. +..+.+. .++...-|++++++ +++.+| |...+
T Consensus 108 ~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l-----GhvSml~dVavS~D-~~~IitaDRDEk------- 174 (390)
T KOG3914|consen 108 KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL-----GHVSMLLDVAVSPD-DQFIITADRDEK------- 174 (390)
T ss_pred cCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh-----hhhhhhheeeecCC-CCEEEEecCCce-------
Confidence 3566777765566777887665455554221 2222221 14556789999996 555554 43221
Q ss_pred EeeeecCCCceEEEEcCCCCeEEEe-ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 170 KLNITNDSTGRLLSYNPRSSQVTVL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 170 ~~~~~~~~~G~l~~~d~~~g~~~~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
=++.+|... -.++.+ .+.-.+-.+|++-++. ++.+-.+.+.|+..++.
T Consensus 175 ---------IRvs~ypa~-f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 175 ---------IRVSRYPAT-FVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDIT 223 (390)
T ss_pred ---------EEEEecCcc-cchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEecc
Confidence 134444321 111111 1122355678887643 56677777777777765
No 267
>PHA03098 kelch-like protein; Provisional
Probab=68.51 E-value=1.2e+02 Score=29.63 Aligned_cols=167 Identities=8% Similarity=-0.051 Sum_probs=83.6
Q ss_pred eEEEecCCCeEEEEeCCC------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181 98 GLALHYATRQLYIADAYS------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~~------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~ 171 (310)
+++. -+++|||.-+.. .+.++|+.+++.+.... ..... .-..+++ - +|+||+.......
T Consensus 337 ~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-lp~~r--~~~~~~~-~-~~~iYv~GG~~~~-------- 401 (534)
T PHA03098 337 GVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPP-LIFPR--YNPCVVN-V-NNLIYVIGGISKN-------- 401 (534)
T ss_pred eEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC-cCcCC--ccceEEE-E-CCEEEEECCcCCC--------
Confidence 4444 378999975432 37889988776544322 11111 1112333 3 5899997532100
Q ss_pred eeecCCCceEEEEcCCCCeEEEeecCCCCCc-e-eEEccCCCEEEEEecC--------CCeEEEEEecCCCCCceee-ec
Q 048181 172 NITNDSTGRLLSYNPRSSQVTVLLRNLTGPA-G-VAISVDSSFLLVSEFT--------GNRTLKYWLRGPRANSFDI-IN 240 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pn-G-Ia~~~dg~~Lyv~d~~--------~~~I~~~~~~~~~~g~~~~-~~ 240 (310)
......+++||+.+++.+.+.. ++.|. + -+..-++ .||+.--. -..+++|++.. .+... ..
T Consensus 402 ---~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~---~~W~~~~~ 473 (534)
T PHA03098 402 ---DELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDG-KIYVIGGISYIDNIKVYNIVESYNPVT---NKWTELSS 473 (534)
T ss_pred ---CcccceEEEEeCCCCeeeecCC-CCccccCceEEEECC-EEEEECCccCCCCCcccceEEEecCCC---CceeeCCC
Confidence 0112468999998776655432 22221 1 1222334 58886421 12488888753 33332 22
Q ss_pred CC--CCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCC
Q 048181 241 FQ--AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEA 293 (310)
Q Consensus 241 l~--g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~ 293 (310)
++ ..-.++++ - +|.||+........ ....+.+||++.+.=..+..++
T Consensus 474 ~~~~r~~~~~~~-~--~~~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 474 LNFPRINASLCI-F--NNKIYVVGGDKYEY---YINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred CCcccccceEEE-E--CCEEEEEcCCcCCc---ccceeEEEeCCCCEEEecCCCc
Confidence 22 11122333 3 57898865432100 0135788998876555554443
No 268
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=68.11 E-value=21 Score=20.70 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=20.3
Q ss_pred CCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181 199 TGPAGVAISVDSSFLLVSEFTGNRTLKYW 227 (310)
Q Consensus 199 ~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~ 227 (310)
..-+.|+++|+++ ++++-...+.|+.++
T Consensus 12 ~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred CcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 4568999999987 455656677777654
No 269
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=67.84 E-value=1.3e+02 Score=30.98 Aligned_cols=114 Identities=12% Similarity=0.119 Sum_probs=65.6
Q ss_pred eeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 96 TFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 96 P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
-..|++|+..+.+..+-..+.|..++.++|+.....+...+. -..+--+-.|| .| +|++.+..
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~-eG~lIKv~lDP-Sg-iY~atScs-------------- 661 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH-EGDLIKVILDP-SG-IYLATSCS-------------- 661 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC-CCceEEEEECC-Cc-cEEEEeec--------------
Confidence 347888844444443434456888888877654443332211 11233567788 35 66655432
Q ss_pred CCCceEEEEcCCCCeEE-EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 176 DSTGRLLSYNPRSSQVT-VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~-~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
+-.|..||-.+|+.- .+...-..-.|+-|.+|=++| ++-++.++|+.+.+.
T Consensus 662 --dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHl-ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 662 --DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHL-ISVSGDGCIFVWKLP 713 (1080)
T ss_pred --CCceEEEEeccchhhhhhcCcchheeeeeecccchhh-eeecCCceEEEEECc
Confidence 234566665555532 122223345899999999875 577788888766553
No 270
>PRK13684 Ycf48-like protein; Provisional
Probab=66.31 E-value=1.1e+02 Score=28.20 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=23.7
Q ss_pred eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCC
Q 048181 24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD 64 (310)
Q Consensus 24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g 64 (310)
-++..+|.. ....+|++..+.+.|++.. .+.|++-...|
T Consensus 37 W~~~~~~~~-~~l~~v~F~d~~~g~avG~-~G~il~T~DgG 75 (334)
T PRK13684 37 WQVIDLPTE-ANLLDIAFTDPNHGWLVGS-NRTLLETNDGG 75 (334)
T ss_pred cEEEecCCC-CceEEEEEeCCCcEEEEEC-CCEEEEEcCCC
Confidence 344455532 3467788875556566664 67787765554
No 271
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.10 E-value=1.1e+02 Score=32.64 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=74.4
Q ss_pred eEEEccCCC----EEEEEeCCCeEEEEECCCc-----eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181 38 SIAFEPVGG----AFYTGVADGRILKYQAPDG-----FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL 108 (310)
Q Consensus 38 gia~d~~G~----l~~~d~~~g~I~r~~~~g~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L 108 (310)
.++|.+.|. ++..+..+|.|.-++++.- ...++ ......+.-.||.|.+..+++
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la-----------------~~~~h~G~V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLA-----------------TKSKHTGPVLGLDFNPFQGNL 131 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHh-----------------hhcccCCceeeeeccccCCce
Confidence 467776553 3555667888888877631 11111 011234456789997556667
Q ss_pred EEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181 109 YIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR 187 (310)
Q Consensus 109 yVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~ 187 (310)
..+....| |+..|... ..+.+. . + ....+.+|.+-.- +. ...+.+.....+|+...+|.+
T Consensus 132 LASGa~~geI~iWDlnn-~~tP~~--~-~-~~~~~~eI~~lsW---------Nr-----kvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNK-PETPFT--P-G-SQAPPSEIKCLSW---------NR-----KVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred eeccCCCCcEEEeccCC-cCCCCC--C-C-CCCCcccceEecc---------ch-----hhhHHhhccCCCCCceecccc
Confidence 65544444 88888764 111111 0 1 1223334433321 10 011112234567888888876
Q ss_pred CCe-EEEeecCC--CCCceeEEccCCCEEEEEecCCC
Q 048181 188 SSQ-VTVLLRNL--TGPAGVAISVDSSFLLVSEFTGN 221 (310)
Q Consensus 188 ~g~-~~~~~~~l--~~pnGIa~~~dg~~Lyv~d~~~~ 221 (310)
..+ +..+.+.- ..-++|+|+||..+-+++.+...
T Consensus 193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd 229 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD 229 (1049)
T ss_pred CCCcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence 332 11111111 12359999999876555555443
No 272
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.69 E-value=1.3e+02 Score=28.99 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=80.5
Q ss_pred eEEEecCCCeEEEEeCCCcEEEE-eCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181 98 GLALHYATRQLYIADAYSGLLVV-GPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND 176 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~~gi~~i-d~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~ 176 (310)
-..+.+.++.+++.-....+.++ |..++.+ .+ ...+. --+..-.++.|.++.+.+|.+.
T Consensus 115 ~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~-~l~~h-tDYVR~g~~~~~~~hivvtGsY---------------- 174 (487)
T KOG0310|consen 115 VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QA-ELSGH-TDYVRCGDISPANDHIVVTGSY---------------- 174 (487)
T ss_pred EEEecccCCeEEEecCCCceEEEEEcCCcEE--EE-EecCC-cceeEeeccccCCCeEEEecCC----------------
Confidence 45565567778776444455554 5555442 11 12221 1233445666656778887654
Q ss_pred CCceEEEEcCCCCeEEE--eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee--eecCCCCCceeeeCC
Q 048181 177 STGRLLSYNPRSSQVTV--LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD--IINFQAKPHNIKRNP 252 (310)
Q Consensus 177 ~~G~l~~~d~~~g~~~~--~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~--~~~l~g~Pdgl~~d~ 252 (310)
+|.|-.||..+....+ +..+.+. ..+.+-|.|. +++ ..+++.|.++|+.+. +..- ..+-..-...|++.+
T Consensus 175 -Dg~vrl~DtR~~~~~v~elnhg~pV-e~vl~lpsgs-~ia-sAgGn~vkVWDl~~G--~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 175 -DGKVRLWDTRSLTSRVVELNHGCPV-ESVLALPSGS-LIA-SAGGNSVKVWDLTTG--GQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred -CceEEEEEeccCCceeEEecCCCce-eeEEEcCCCC-EEE-EcCCCeEEEEEecCC--ceehhhhhcccceEEEEEeec
Confidence 3556666654332111 1122222 4455556665 444 346667777777632 1111 122223356677777
Q ss_pred CCCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCCC
Q 048181 253 GLLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEAQ 294 (310)
Q Consensus 253 ~~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~~ 294 (310)
++.-.++..--| .|-.|| .+=+++..+..|.+
T Consensus 249 --~~~rLlS~sLD~--------~VKVfd~t~~Kvv~s~~~~~p 281 (487)
T KOG0310|consen 249 --DSTRLLSGSLDR--------HVKVFDTTNYKVVHSWKYPGP 281 (487)
T ss_pred --CCceEeeccccc--------ceEEEEccceEEEEeeecccc
Confidence 775444433333 344455 45566666665544
No 273
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=65.65 E-value=19 Score=22.35 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.0
Q ss_pred ceeeEEEecCCCeEEEEeCCCcEEEEeCCC
Q 048181 95 RTFGLALHYATRQLYIADAYSGLLVVGPNG 124 (310)
Q Consensus 95 ~P~Gla~d~~~g~LyVad~~~gi~~id~~~ 124 (310)
...++++ .++.+||++...|+..+|...
T Consensus 3 ~a~~v~v--~g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 3 DARDVAV--SGNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred eEEEEEE--ECCEEEEEeCCCCEEEEECCC
Confidence 3457777 478999999888999998654
No 274
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.46 E-value=58 Score=30.85 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=13.9
Q ss_pred CCceeEEccCCCEEEEE
Q 048181 200 GPAGVAISVDSSFLLVS 216 (310)
Q Consensus 200 ~pnGIa~~~dg~~Lyv~ 216 (310)
.-.|++++||+++||-.
T Consensus 201 gfEglait~d~~~L~~~ 217 (391)
T COG4222 201 GFEGLAITPDGKKLYAL 217 (391)
T ss_pred ceeeEEecCCCceEEEE
Confidence 34699999999988874
No 275
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=62.50 E-value=15 Score=20.67 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=18.4
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEE
Q 048181 104 ATRQLYIADAYSGLLVVGPNGRLAT 128 (310)
Q Consensus 104 ~~g~LyVad~~~gi~~id~~~~~~~ 128 (310)
.+|.+|++.....++.+|.++|+..
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEE
Confidence 3678888876666888998777653
No 276
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=61.85 E-value=12 Score=35.79 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=26.7
Q ss_pred cCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCc
Q 048181 240 NFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGA 284 (310)
Q Consensus 240 ~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~ 284 (310)
++...|.||.+|. ||.+|+.+.+.. .+..++++++
T Consensus 464 ~~fylphgl~~dk--dgf~~~tdvash--------~v~k~k~~~~ 498 (501)
T KOG3567|consen 464 NLFYLPHGLSIDK--DGFYWVTDVASH--------QVFKLKPNNK 498 (501)
T ss_pred CceecCCcceecC--CCcEEeecccch--------hhhhcccccc
Confidence 3345799999999 999999998863 5666666554
No 277
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=61.70 E-value=1.5e+02 Score=28.21 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=33.3
Q ss_pred CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce-ee--ecCC---CCCceeeeCCCCCCcEEEEEecC
Q 048181 200 GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF-DI--INFQ---AKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 200 ~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~-~~--~~l~---g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
.-.++++.+||. ++++- ..+.+++-.-++. .... ++ ...+ ...-.+.+.+ ++++|++...+
T Consensus 282 ~l~~v~~~~dg~-l~l~g-~~G~l~~S~d~G~-~~~~~~f~~~~~~~~~~~l~~v~~~~--d~~~~a~G~~G 348 (398)
T PLN00033 282 RIQNMGWRADGG-LWLLT-RGGGLYVSKGTGL-TEEDFDFEEADIKSRGFGILDVGYRS--KKEAWAAGGSG 348 (398)
T ss_pred ceeeeeEcCCCC-EEEEe-CCceEEEecCCCC-cccccceeecccCCCCcceEEEEEcC--CCcEEEEECCC
Confidence 347888999987 55443 3455655433321 1111 12 1111 1245577777 88999887664
No 278
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=61.60 E-value=1.2e+02 Score=27.20 Aligned_cols=165 Identities=13% Similarity=0.049 Sum_probs=92.4
Q ss_pred eCCCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCC--ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181 28 LFPPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPD--GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA 104 (310)
Q Consensus 28 ~~~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~ 104 (310)
.+++....-.++||.|. |.++.+...+++|+-++..+ .++-... .+++ --..-..+|+. +
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~v---------ld~~-------hkrsVRsvAws-p 71 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTV---------LDDG-------HKRSVRSVAWS-P 71 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEe---------cccc-------chheeeeeeec-C
Confidence 34555556789999998 88777777777777776653 1221100 0110 01123468885 6
Q ss_pred CCeEEEEeCCCcEEE-EeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181 105 TRQLYIADAYSGLLV-VGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183 (310)
Q Consensus 105 ~g~LyVad~~~gi~~-id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~ 183 (310)
.|+++++........ ..-.+++.+.+ ..++| +-+-.-.++.++ +|++..|-+..+ .=-++.
T Consensus 72 ~g~~La~aSFD~t~~Iw~k~~~efecv-~~lEG-HEnEVK~Vaws~-sG~~LATCSRDK---------------SVWiWe 133 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWKKEDGEFECV-ATLEG-HENEVKCVAWSA-SGNYLATCSRDK---------------SVWIWE 133 (312)
T ss_pred CCcEEEEeeccceEEEeecCCCceeEE-eeeec-cccceeEEEEcC-CCCEEEEeeCCC---------------eEEEEE
Confidence 788655544433222 22223444433 23444 224455788998 588887766431 112333
Q ss_pred EcCCCCeEE---EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 184 YNPRSSQVT---VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 184 ~d~~~g~~~---~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
+|.+ .+.+ ++.+...--..+.++|-.. |+++-+..+.|..|+-.
T Consensus 134 ~ded-dEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 134 IDED-DEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDE 180 (312)
T ss_pred ecCC-CcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeec
Confidence 4422 3332 2333444457899999765 78888888888777654
No 279
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=61.29 E-value=59 Score=34.10 Aligned_cols=86 Identities=10% Similarity=0.060 Sum_probs=50.2
Q ss_pred CceEEEEcCCCCeEEEe-ecCCCCCceeEEccCCCEEEE-Eec----CCCeEEEEEecCCCCCceee-ecCCCCCceeee
Q 048181 178 TGRLLSYNPRSSQVTVL-LRNLTGPAGVAISVDSSFLLV-SEF----TGNRTLKYWLRGPRANSFDI-INFQAKPHNIKR 250 (310)
Q Consensus 178 ~G~l~~~d~~~g~~~~~-~~~l~~pnGIa~~~dg~~Lyv-~d~----~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~ 250 (310)
+|+|...|-+....+++ +..-.-.---+|||||++|-+ +.. .+..|++-+++....+.+++ ..-...|. -.+
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaipr-wrv 406 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPR-WRV 406 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccc-eEe
Confidence 35788888775555554 322111123468999998877 322 23469999988765565655 11112232 556
Q ss_pred CCCCCCc---EEEEEecCC
Q 048181 251 NPGLLQT---FWEAAIITR 266 (310)
Q Consensus 251 d~~~dG~---l~va~~~~~ 266 (310)
-+ +|. +||++.+..
T Consensus 407 ~e--~gdt~ivyv~~a~nn 423 (912)
T TIGR02171 407 LE--NGDTVIVYVSDASNN 423 (912)
T ss_pred cC--CCCeEEEEEcCCCCC
Confidence 65 563 588877664
No 280
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=61.27 E-value=67 Score=29.22 Aligned_cols=61 Identities=8% Similarity=-0.022 Sum_probs=40.0
Q ss_pred ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181 202 AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 202 nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
+-+.|+|||. .+++--..+.|+-..+.+.-..-..+.+-.+..-++.... ||+..+++..-
T Consensus 51 ~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~--d~s~i~S~gtD 111 (338)
T KOG0265|consen 51 YTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR--DGSHILSCGTD 111 (338)
T ss_pred EEEEECCCCC-eEeecCCcceEEEEeccccccceeeeccccceeEeeeecc--CCCEEEEecCC
Confidence 6788999986 7788778888876665543211111123345567788888 88877777654
No 281
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=61.12 E-value=97 Score=31.72 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=61.9
Q ss_pred EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeec
Q 048181 117 LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR 196 (310)
Q Consensus 117 i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~ 196 (310)
++.++++..+-..+... ..++ ..-+|+++ +|+..+|.-.++ .+.-++|.+... +.+..+.+
T Consensus 60 VVlfn~~~~tQ~hlvns-sRk~---~t~vAfS~-~GryvatGEcG~-------------~pa~kVw~la~h-~vVAEfvd 120 (1080)
T KOG1408|consen 60 VVLFNVDSCTQSHLVNS-SRKP---LTCVAFSQ-NGRYVATGECGR-------------TPASKVWSLAFH-GVVAEFVD 120 (1080)
T ss_pred EEEEcccccchhheecc-cCcc---eeEEEEcC-CCcEEEecccCC-------------Cccceeeeeccc-cchhhhhh
Confidence 66777765332222221 1123 35799999 599877765431 122345544332 22222333
Q ss_pred CCCCCceeEEccCCCEEEEEecCCC-eEEE-EEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEec
Q 048181 197 NLTGPAGVAISVDSSFLLVSEFTGN-RTLK-YWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAII 264 (310)
Q Consensus 197 ~l~~pnGIa~~~dg~~Lyv~d~~~~-~I~~-~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~ 264 (310)
.-..-..+||+|.++++ |+--..| .|.- +++...-.+.. ..+.......++.+ ||.++|+...
T Consensus 121 HKY~vtcvaFsp~~kyv-vSVGsQHDMIVnv~dWr~N~~~as--nkiss~Vsav~fsE--dgSYfvT~gn 185 (1080)
T KOG1408|consen 121 HKYNVTCVAFSPGNKYV-VSVGSQHDMIVNVNDWRVNSSGAS--NKISSVVSAVAFSE--DGSYFVTSGN 185 (1080)
T ss_pred ccccceeeeecCCCcEE-EeeccccceEEEhhhhhhcccccc--cccceeEEEEEEcc--CCceeeeeee
Confidence 33455789999988744 3322233 2322 21111001111 22333455678888 8888887654
No 282
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=61.00 E-value=26 Score=20.75 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe
Q 048181 151 TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL 194 (310)
Q Consensus 151 ~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~ 194 (310)
+|++|.|..... ....|.|+|+++.. ..+++
T Consensus 1 dg~lYGTT~~GG------------~~~~GTvf~~~~~g-~~t~L 31 (34)
T TIGR03803 1 GGTLYGTTSGGG------------ASGFGTLYRLSTAG-GTTVL 31 (34)
T ss_pred CCcEEEEcccCC------------CCCceeEEEEcCCC-CeEEE
Confidence 378998876432 23468999999874 34444
No 283
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=60.91 E-value=27 Score=34.31 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=39.3
Q ss_pred CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
.+|+|..||...+ ++.....--.|+=|+|+|+|. ++++-+..+++..||..
T Consensus 279 ~DgSiiLyD~~~~-~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 279 EDGSIILYDTTRG-VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCeEEEEEcCCC-eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEee
Confidence 4688999998655 444444445799999999997 67777789999999875
No 284
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=59.75 E-value=1.5e+02 Score=27.64 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=60.7
Q ss_pred CceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
..-.++.+ .+|.+.-|...+.+.+.|..+-....+....-| +....|-+-+|. ...||-++.
T Consensus 278 eaVLhlrf--~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG-HrAaVNvVdfd~---kyIVsASgD------------ 339 (499)
T KOG0281|consen 278 EAVLHLRF--SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNVVDFDD---KYIVSASGD------------ 339 (499)
T ss_pred ceeEEEEE--eCCEEEEecCCceeEEEeccCchHHHHHHHHhh-hhhheeeecccc---ceEEEecCC------------
Confidence 34567887 367665554444454444433211111111222 223456666654 355554432
Q ss_pred ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
-.+-.++..+++....+. ..-.|||--.-...|.|+-+..+.|+-+++..
T Consensus 340 -----RTikvW~~st~efvRtl~--gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 340 -----RTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred -----ceEEEEeccceeeehhhh--cccccceehhccCeEEEecCCCceEEEEeccc
Confidence 345555655555432222 24578888765556999999999999888864
No 285
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=59.34 E-value=18 Score=21.68 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=17.2
Q ss_pred eEEEecCCCeEEEEeCCCcEEEEeCCC
Q 048181 98 GLALHYATRQLYIADAYSGLLVVGPNG 124 (310)
Q Consensus 98 Gla~d~~~g~LyVad~~~gi~~id~~~ 124 (310)
++++ .++.||+.+....++.+|+++
T Consensus 16 ~~~v--~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAV--AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp --EE--CTSEEEEE-TTSEEEEEETT-
T ss_pred CCEE--ECCEEEEEcCCCEEEEEeCCC
Confidence 3466 489999998876799998763
No 286
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=59.07 E-value=82 Score=29.89 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=24.8
Q ss_pred CCceeEEccCCCEEEEEecC---------------CCeEEEEEecCC
Q 048181 200 GPAGVAISVDSSFLLVSEFT---------------GNRTLKYWLRGP 231 (310)
Q Consensus 200 ~pnGIa~~~dg~~Lyv~d~~---------------~~~I~~~~~~~~ 231 (310)
.|.=|.+|-||+.|||+.+. .+.+.+++++..
T Consensus 390 GPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~G~~miqidvdt~ 436 (476)
T KOG0918|consen 390 GPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSKGSHMIQIDVDTV 436 (476)
T ss_pred CceeEEeccCCcEEEEEchhhhhhHhhhCHHHHhcCceEEEEeeecc
Confidence 68889999999999999752 346677777643
No 287
>PRK13684 Ycf48-like protein; Provisional
Probab=58.45 E-value=1.5e+02 Score=27.24 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=30.1
Q ss_pred CceeeEEEecCCCeEEEEeCCCc-EEEEeCCCCe-EEEeeccCCCccccCccceEEeCCCCeEEEEcC
Q 048181 94 RRTFGLALHYATRQLYIADAYSG-LLVVGPNGRL-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDA 159 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~~~g-i~~id~~~~~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~ 159 (310)
+...+++++ +++.+++. ...| +++-..++++ .+.+ ... .-..++++++.+ +|++|+...
T Consensus 173 g~~~~i~~~-~~g~~v~~-g~~G~i~~s~~~gg~tW~~~-~~~---~~~~l~~i~~~~-~g~~~~vg~ 233 (334)
T PRK13684 173 GVVRNLRRS-PDGKYVAV-SSRGNFYSTWEPGQTAWTPH-QRN---SSRRLQSMGFQP-DGNLWMLAR 233 (334)
T ss_pred ceEEEEEEC-CCCeEEEE-eCCceEEEEcCCCCCeEEEe-eCC---CcccceeeeEcC-CCCEEEEec
Confidence 344577775 45554443 3334 4443223333 2222 111 224567888888 488887643
No 288
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=58.09 E-value=1.5e+02 Score=27.05 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=20.3
Q ss_pred eeEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 048181 97 FGLALHYATRQLYIADAYSGLLVVGPNGR 125 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~~gi~~id~~~~ 125 (310)
..+.+++..+.|+|+.+...+..++....
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~ 45 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPAN 45 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccch
Confidence 35677656788999887766777775543
No 289
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=57.69 E-value=32 Score=20.25 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=13.8
Q ss_pred ceeEEccCCCEEEEEecCC
Q 048181 202 AGVAISVDSSFLLVSEFTG 220 (310)
Q Consensus 202 nGIa~~~dg~~Lyv~d~~~ 220 (310)
-..+++|||++|+++-...
T Consensus 12 ~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT
T ss_pred cCEEEecCCCEEEEEecCC
Confidence 4678999999888876544
No 290
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=57.65 E-value=2.3e+02 Score=29.17 Aligned_cols=199 Identities=11% Similarity=0.100 Sum_probs=96.0
Q ss_pred eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc--eEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181 24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG--FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL 101 (310)
Q Consensus 24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~ 101 (310)
+..|+++|.-.-..++++..+.- +..+-.++.|.-++.+.. ..++ .++.-.+-.+
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~kciRTi----------------------~~~y~l~~~F 420 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDSI-LLASGAGESIKIWNRDTLKCIRTI----------------------TCGYILASKF 420 (888)
T ss_pred cceeeeccchhheeEEEeecCce-eeeecCCCcEEEEEccCcceeEEe----------------------ccccEEEEEe
Confidence 44466666555566777776544 444444555655665532 2222 2234445555
Q ss_pred ecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee-e-cCCC
Q 048181 102 HYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI-T-NDST 178 (310)
Q Consensus 102 d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~-~-~~~~ 178 (310)
- +.++..|.-..+| +..+|..+..... .... +-...-.+++.|+ +.=++|-+..+. ..-|-..+. . ....
T Consensus 421 v-pgd~~Iv~G~k~Gel~vfdlaS~~l~E---ti~A-HdgaIWsi~~~pD-~~g~vT~saDkt-VkfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 421 V-PGDRYIVLGTKNGELQVFDLASASLVE---TIRA-HDGAIWSISLSPD-NKGFVTGSADKT-VKFWDFKLVVSVPGTQ 493 (888)
T ss_pred c-CCCceEEEeccCCceEEEEeehhhhhh---hhhc-cccceeeeeecCC-CCceEEecCCcE-EEEEeEEEEeccCccc
Confidence 3 3444444444455 7777766543211 1110 1112345777774 666666544310 000000000 0 0001
Q ss_pred ceEEEEcCCCCeEEEeecCCCCC---ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC--CCC-ceeeeC
Q 048181 179 GRLLSYNPRSSQVTVLLRNLTGP---AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ--AKP-HNIKRN 251 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~~~l~~p---nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~--g~P-dgl~~d 251 (310)
-++..+-. + ..+..+ -.+.+||||++|- +.--++.|..|-++. ..+ ..+. ..| -.|-+.
T Consensus 494 ~k~lsl~~-~-------rtLel~ddvL~v~~Spdgk~La-VsLLdnTVkVyflDt-----lKFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 494 KKVLSLKH-T-------RTLELEDDVLCVSVSPDGKLLA-VSLLDNTVKVYFLDT-----LKFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred ceeeeecc-c-------eEEeccccEEEEEEcCCCcEEE-EEeccCeEEEEEecc-----eeeeeeecccccceeEEecc
Confidence 11111110 0 112223 4788999999554 445677888887763 222 2221 123 445566
Q ss_pred CCCCCcEEEEEecCCCC
Q 048181 252 PGLLQTFWEAAIITRQP 268 (310)
Q Consensus 252 ~~~dG~l~va~~~~~~~ 268 (310)
. |+.+.+++..-++.
T Consensus 560 ~--DSklivTgSADKnV 574 (888)
T KOG0306|consen 560 P--DSKLIVTGSADKNV 574 (888)
T ss_pred C--CcCeEEeccCCCce
Confidence 6 88888888777654
No 291
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=57.60 E-value=51 Score=30.73 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=64.4
Q ss_pred CceeeEEEecCCCeEEEE-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 94 RRTFGLALHYATRQLYIA-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVa-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
-++++|++.+ +...|++ +....++.+|...- .+.+ ....+ ..+..-|+.++| +|.=+|+-+..
T Consensus 230 mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l-~~p~-~v~~d-hvsAV~dVdfsp-tG~EfvsgsyD----------- 293 (433)
T KOG0268|consen 230 MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL-SRPL-NVHKD-HVSAVMDVDFSP-TGQEFVSGSYD----------- 293 (433)
T ss_pred ccccceecCc-cccceeeccccccceehhhhhh-cccc-hhhcc-cceeEEEeccCC-Ccchhcccccc-----------
Confidence 3678999974 7777764 44556888886531 1111 11111 334456899999 69999987643
Q ss_pred eecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEE-EecCCCeEEEEEe
Q 048181 173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLV-SEFTGNRTLKYWL 228 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv-~d~~~~~I~~~~~ 228 (310)
.+=+||.++.....-..-...+..--++.+|-|.++++- +|-.+-|+|+-..
T Consensus 294 ----ksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 294 ----KSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred ----ceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 122455444321100011223455678999999875432 2334456666543
No 292
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=56.41 E-value=1.4e+02 Score=28.45 Aligned_cols=150 Identities=12% Similarity=0.122 Sum_probs=80.7
Q ss_pred cceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181 36 GESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY 114 (310)
Q Consensus 36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~ 114 (310)
-..+.|.++|..++++...|.|-.+.+.-. +..+. ......-..+++. ++..-|++...
T Consensus 141 Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~-------------------ahh~eaIRdlafS-pnDskF~t~Sd 200 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQ-------------------AHHAEAIRDLAFS-PNDSKFLTCSD 200 (464)
T ss_pred ceeEEEccCCCEEEEcCCCceEEecccchhhhHHhh-------------------HhhhhhhheeccC-CCCceeEEecC
Confidence 456888888887777777777766777622 11110 0111234578886 45666665455
Q ss_pred Cc-EEEEeCCCC-eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181 115 SG-LLVVGPNGR-LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT 192 (310)
Q Consensus 115 ~g-i~~id~~~~-~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~ 192 (310)
.+ |...|..-. +.+++. ..| --+--+.-+|. -.+.++-+. +.-|-.+||++|..-
T Consensus 201 Dg~ikiWdf~~~kee~vL~--GHg---wdVksvdWHP~-kgLiasgsk-----------------DnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 201 DGTIKIWDFRMPKEERVLR--GHG---WDVKSVDWHPT-KGLIASGSK-----------------DNLVKLWDPRSGSCL 257 (464)
T ss_pred CCeEEEEeccCCchhheec--cCC---CCcceeccCCc-cceeEEccC-----------------CceeEeecCCCcchh
Confidence 45 333343221 222221 111 12345667775 444444322 234666788877532
Q ss_pred E-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 193 V-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 193 ~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
. +...-..--++.|.+++++ +.+-+..+.+..||+.
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~-Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNW-LLTGSKDQSCKVFDIR 294 (464)
T ss_pred hhhhhccceEEEEEEcCCCCe-eEEccCCceEEEEehh
Confidence 1 1111123458889999984 5566777778888875
No 293
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.12 E-value=1.8e+02 Score=27.46 Aligned_cols=189 Identities=12% Similarity=0.037 Sum_probs=85.5
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEE-CCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCC
Q 048181 37 ESIAFEPVGGAFYTGVADGRILKYQ-APDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYS 115 (310)
Q Consensus 37 egia~d~~G~l~~~d~~~g~I~r~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~ 115 (310)
.-+++..+|.++-+.-.+|.++.++ |.-... . ........-..|.+. ++|.+++.-...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~--l-----------------~e~~~~~eV~DL~FS-~dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI--L-----------------EEIAHHAEVKDLDFS-PDGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh--h-----------------hhHhhcCccccceeC-CCCcEEEEecCC
Confidence 3466666666665555666666666 441110 0 001122334467885 788777654444
Q ss_pred cEEEEeCCCCeEEEeeccCC-CccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe
Q 048181 116 GLLVVGPNGRLATQLATGAE-GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL 194 (310)
Q Consensus 116 gi~~id~~~~~~~~~~~~~~-g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~ 194 (310)
...+.+.+++..-...+..+ ...+...+-.+... ...+|+......... . ...+..+++-+ .-++....
T Consensus 208 ~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~-~~~l~laa~~~~~~~---v-----~~~~~~~w~~~-~~l~~~~~ 277 (398)
T KOG0771|consen 208 SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA-QETLRLAASQFPGGG---V-----RLCDISLWSGS-NFLRLRKK 277 (398)
T ss_pred ceEEEEeccCchhhhcCCcccchhhhhceecccCC-CceEEEEEecCCCCc---e-----eEEEeeeeccc-cccchhhh
Confidence 44444444442111011111 11222333333333 246666654321000 0 00011222222 11222223
Q ss_pred ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCCCCCceeeeCCCCCCcEEEE
Q 048181 195 LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQAKPHNIKRNPGLLQTFWEA 261 (310)
Q Consensus 195 ~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~g~Pdgl~~d~~~dG~l~va 261 (310)
......-..+++++||+++ ..-+..+.|..|+... ...... +.+ +.-.++++.+ |-+.-..
T Consensus 278 ~~~~~siSsl~VS~dGkf~-AlGT~dGsVai~~~~~--lq~~~~vk~aH~-~~VT~ltF~P--dsr~~~s 341 (398)
T KOG0771|consen 278 IKRFKSISSLAVSDDGKFL-ALGTMDGSVAIYDAKS--LQRLQYVKEAHL-GFVTGLTFSP--DSRYLAS 341 (398)
T ss_pred hhccCcceeEEEcCCCcEE-EEeccCCcEEEEEece--eeeeEeehhhhe-eeeeeEEEcC--CcCcccc
Confidence 3344456789999999854 4456688888776531 111111 121 3466777777 5544333
No 294
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=55.63 E-value=1.7e+02 Score=27.00 Aligned_cols=170 Identities=14% Similarity=0.038 Sum_probs=79.2
Q ss_pred CCeEEEEeC--CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181 105 TRQLYIADA--YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL 182 (310)
Q Consensus 105 ~g~LyVad~--~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~ 182 (310)
++..|+... ...|..++.++..+..+ +...+ .-.+.+++| +|++..+-. |-+.-.++++. +..+|.+-
T Consensus 197 ~~~k~imsas~dt~i~lw~lkGq~L~~i----dtnq~-~n~~aavSP-~GRFia~~g---FTpDVkVwE~~-f~kdG~fq 266 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLKGQLLQSI----DTNQS-SNYDAAVSP-DGRFIAVSG---FTPDVKVWEPI-FTKDGTFQ 266 (420)
T ss_pred CCceEEEEecCCCcEEEEecCCceeeee----ccccc-cccceeeCC-CCcEEEEec---CCCCceEEEEE-eccCcchh
Confidence 555666543 34588889886443333 22222 235788999 599876542 11111111110 11222211
Q ss_pred EEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC-CCCc-eee--ec-C-----CCCCceeeeCC
Q 048181 183 SYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP-RANS-FDI--IN-F-----QAKPHNIKRNP 252 (310)
Q Consensus 183 ~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~-~~g~-~~~--~~-l-----~g~Pdgl~~d~ 252 (310)
.+- ++-.+-..-..---.||+++... .++-+..+.++.++.+-. ..+. ..+ .+ . .+.|=.|++.+
T Consensus 267 ev~----rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP 341 (420)
T KOG2096|consen 267 EVK----RVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP 341 (420)
T ss_pred hhh----hhheeccchhheeeeeeCCCcce-eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC
Confidence 100 00000111122346778877653 445555554444333211 0111 111 11 1 14577899998
Q ss_pred CCCCcEEEEEecCCCCC---------C------CCceeeEEECCCCcEEEEEec
Q 048181 253 GLLQTFWEAAIITRQPA---------G------TPVPIGQRISAFGAVLDTISF 291 (310)
Q Consensus 253 ~~dG~l~va~~~~~~~~---------~------~~~~~v~~~~~~G~~~~~~~~ 291 (310)
+|.++.+.++..... + ...-.-+.|+++|+.+....+
T Consensus 342 --~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 342 --SGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred --CCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 898888777653110 1 111223667888876654443
No 295
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=55.24 E-value=1.5e+02 Score=28.20 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=47.2
Q ss_pred ccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE--EEeecCCCCCceeEEccCCCEEEEEecC
Q 048181 142 LDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV--TVLLRNLTGPAGVAISVDSSFLLVSEFT 219 (310)
Q Consensus 142 pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~--~~~~~~l~~pnGIa~~~dg~~Lyv~d~~ 219 (310)
.|-+++.|-++.|..|-+ .+++|..+|..+-.. ..+...-..-..+.|||...+++.+...
T Consensus 275 vn~~~fnp~~~~ilAT~S-----------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGS-----------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred eeEEEeCCCCCceEEecc-----------------CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence 466777775555554433 357888888764322 1111111233689999999999999989
Q ss_pred CCeEEEEEec
Q 048181 220 GNRTLKYWLR 229 (310)
Q Consensus 220 ~~~I~~~~~~ 229 (310)
.+|+..+|++
T Consensus 338 D~rl~vWDls 347 (422)
T KOG0264|consen 338 DRRLNVWDLS 347 (422)
T ss_pred CCcEEEEecc
Confidence 9999999886
No 296
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=54.99 E-value=1.7e+02 Score=26.72 Aligned_cols=144 Identities=11% Similarity=0.136 Sum_probs=59.4
Q ss_pred CCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181 93 CRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172 (310)
Q Consensus 93 ~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~ 172 (310)
.+.|.++... .++.++++.....|++=...+..-+.+.... ....+++...+ +|++......
T Consensus 103 pgs~~~i~~l-~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~----~gs~~~~~r~~-dG~~vavs~~------------ 164 (302)
T PF14870_consen 103 PGSPFGITAL-GDGSAELAGDRGAIYRTTDGGKTWQAVVSET----SGSINDITRSS-DGRYVAVSSR------------ 164 (302)
T ss_dssp SS-EEEEEEE-ETTEEEEEETT--EEEESSTTSSEEEEE-S--------EEEEEE-T-TS-EEEEETT------------
T ss_pred CCCeeEEEEc-CCCcEEEEcCCCcEEEeCCCCCCeeEcccCC----cceeEeEEECC-CCcEEEEECc------------
Confidence 3456666543 4566666544434666554433333332222 12345666666 3664433322
Q ss_pred eecCCCceEEE-EcCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCC--CC-C
Q 048181 173 ITNDSTGRLLS-YNPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQ--AK-P 245 (310)
Q Consensus 173 ~~~~~~G~l~~-~d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~--g~-P 245 (310)
|.+|+ .|+....-++... .-..-..|.|++|++ ||+.. ..+.|+.=+... ...+... ..+. ++ -
T Consensus 165 ------G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~-~~~~w~~~~~~~~~~~~~~ 235 (302)
T PF14870_consen 165 ------GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPD-DGETWSEPIIPIKTNGYGI 235 (302)
T ss_dssp ------SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TT-EEEEE---B-TTSS--S-E
T ss_pred ------ccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe-CCcEEEEccCCC-CccccccccCCcccCceee
Confidence 33332 2332111222111 223457899999987 66654 566666544111 1011110 1111 11 1
Q ss_pred ceeeeCCCCCCcEEEEEecC
Q 048181 246 HNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 246 dgl~~d~~~dG~l~va~~~~ 265 (310)
=.++..+ ++.+|++....
T Consensus 236 ld~a~~~--~~~~wa~gg~G 253 (302)
T PF14870_consen 236 LDLAYRP--PNEIWAVGGSG 253 (302)
T ss_dssp EEEEESS--SS-EEEEESTT
T ss_pred EEEEecC--CCCEEEEeCCc
Confidence 2357777 88899887765
No 297
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=54.47 E-value=21 Score=21.30 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=13.5
Q ss_pred CeEEEEeCCCcEEEEeCCCCeE
Q 048181 106 RQLYIADAYSGLLVVGPNGRLA 127 (310)
Q Consensus 106 g~LyVad~~~gi~~id~~~~~~ 127 (310)
|++|++.....++.+|.++|++
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKV 22 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSE
T ss_pred CEEEEeCCCCEEEEEECCCCCE
Confidence 4566663333477777777765
No 298
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=53.49 E-value=2.4e+02 Score=28.57 Aligned_cols=33 Identities=6% Similarity=0.061 Sum_probs=21.7
Q ss_pred EEEecCCCeEEEEeCC------------------CcEEEEeCCCCeEEEee
Q 048181 99 LALHYATRQLYIADAY------------------SGLLVVGPNGRLATQLA 131 (310)
Q Consensus 99 la~d~~~g~LyVad~~------------------~gi~~id~~~~~~~~~~ 131 (310)
..+|++-+.+|+--.. .+|+.+|..+|+.+.+-
T Consensus 392 ~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~y 442 (773)
T COG4993 392 ASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVY 442 (773)
T ss_pred cccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeee
Confidence 4577667788875321 24888888888776543
No 299
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=53.19 E-value=2.1e+02 Score=27.25 Aligned_cols=149 Identities=16% Similarity=0.215 Sum_probs=80.4
Q ss_pred cceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCC
Q 048181 36 GESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYS 115 (310)
Q Consensus 36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~ 115 (310)
-..+.|.|+|+-++++...|..--++... + .|.+ | +..-..--.++.+. .+|.-.|+....
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~-f-nFEt---------i-------lQaHDs~Vr~m~ws-~~g~wmiSgD~g 159 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTS-F-NFET---------I-------LQAHDSPVRTMKWS-HNGTWMISGDKG 159 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCce-e-eHHH---------H-------hhhhcccceeEEEc-cCCCEEEEcCCC
Confidence 34577888888788887777766665421 1 1100 0 01112223478885 566665654344
Q ss_pred cEEEE-eCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE-EE
Q 048181 116 GLLVV-GPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV-TV 193 (310)
Q Consensus 116 gi~~i-d~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~-~~ 193 (310)
|.++| ++.-..+. ......-....|++++| +...|+|-+. +|++..+|-.-.+- .+
T Consensus 160 G~iKyWqpnmnnVk----~~~ahh~eaIRdlafSp-nDskF~t~Sd-----------------Dg~ikiWdf~~~kee~v 217 (464)
T KOG0284|consen 160 GMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSP-NDSKFLTCSD-----------------DGTIKIWDFRMPKEERV 217 (464)
T ss_pred ceEEecccchhhhH----HhhHhhhhhhheeccCC-CCceeEEecC-----------------CCeEEEEeccCCchhhe
Confidence 55554 44322221 11222223457899999 5888887654 35666665332222 23
Q ss_pred eecCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181 194 LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW 227 (310)
Q Consensus 194 ~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~ 227 (310)
+...---+..+.++|... |+++-...+ +.+++
T Consensus 218 L~GHgwdVksvdWHP~kg-LiasgskDn-lVKlW 249 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTKG-LIASGSKDN-LVKLW 249 (464)
T ss_pred eccCCCCcceeccCCccc-eeEEccCCc-eeEee
Confidence 333333578999999765 666666666 44443
No 300
>KOG4328 consensus WD40 protein [Function unknown]
Probab=52.34 E-value=1.6e+02 Score=28.38 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=77.5
Q ss_pred cceEEEccCC--CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeEEEEe
Q 048181 36 GESIAFEPVG--GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQLYIAD 112 (310)
Q Consensus 36 Pegia~d~~G--~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~LyVad 112 (310)
--+++|.|-- .++.++...|+|.-++.++..... +| ..-+.+..+.-.+|.+.+. ..++|-+.
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~------------d~--v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK------------DG--VYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc------------Cc--eEEeccCCccccceEecCCChhheeeec
Confidence 3467777642 466666677777777664211100 00 0001122223347887643 34566554
Q ss_pred CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe--
Q 048181 113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-- 190 (310)
Q Consensus 113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-- 190 (310)
...-|...|.+++..+.+...-... ....++-+..+++.+|+.|.. |.+..+|..++.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~--~~fs~~d~~~e~~~vl~~~~~------------------G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDN--IWFSSLDFSAESRSVLFGDNV------------------GNFNVIDLRTDGSE 314 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccc--eeeeeccccCCCccEEEeecc------------------cceEEEEeecCCcc
Confidence 4433666777765444333221000 011233333334566665542 223333332221
Q ss_pred EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 191 VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 191 ~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
...+.-.-..-++|++.|-..+++.+.+..+....+|+.
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred chhhhhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence 111111112568999999988888777766665555543
No 301
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=52.07 E-value=1e+02 Score=28.40 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=31.5
Q ss_pred EEEEcCCCCeEEEe------ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 181 LLSYNPRSSQVTVL------LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 181 l~~~d~~~g~~~~~------~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
|..+|.-+|+.+.- .+.+..+-.++|+|||..||.- .+++|..|++.
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--ykrcirvFdt~ 187 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--YKRCIRVFDTS 187 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--ccceEEEeecc
Confidence 44445545544321 2345677899999999988765 46788888875
No 302
>PHA03098 kelch-like protein; Provisional
Probab=50.75 E-value=2.5e+02 Score=27.45 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=56.8
Q ss_pred CCCeEEEEeCC-------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181 104 ATRQLYIADAY-------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND 176 (310)
Q Consensus 104 ~~g~LyVad~~-------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~ 176 (310)
-+++|||.-+. +.+.++|+.+++.+.+.. .+.... -..+++. ++.||+......... ..
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~--~~~~~~~--~~~iyv~GG~~~~~~---------~~ 453 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-LPISHY--GGCAIYH--DGKIYVIGGISYIDN---------IK 453 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC-CCcccc--CceEEEE--CCEEEEECCccCCCC---------Cc
Confidence 37899997441 238899998876554422 111111 1123333 489998754221000 00
Q ss_pred CCceEEEEcCCCCeEEEeecCCCCC---ceeEEccCCCEEEEEecC-----CCeEEEEEec
Q 048181 177 STGRLLSYNPRSSQVTVLLRNLTGP---AGVAISVDSSFLLVSEFT-----GNRTLKYWLR 229 (310)
Q Consensus 177 ~~G~l~~~d~~~g~~~~~~~~l~~p---nGIa~~~dg~~Lyv~d~~-----~~~I~~~~~~ 229 (310)
....+++||+.+++.+.+. .+..| .+++. -++ .||+.--. .+.|++|++.
T Consensus 454 ~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELS-SLNFPRINASLCI-FNN-KIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred ccceEEEecCCCCceeeCC-CCCcccccceEEE-ECC-EEEEEcCCcCCcccceeEEEeCC
Confidence 1134999999887766543 22222 12332 244 47775322 3467778765
No 303
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=50.62 E-value=2.3e+02 Score=27.00 Aligned_cols=121 Identities=14% Similarity=0.022 Sum_probs=66.5
Q ss_pred ccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec
Q 048181 139 FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF 218 (310)
Q Consensus 139 ~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~ 218 (310)
....|||++. +..++++.. ++.|-.+|..+.......+....-..+.++.+|..|+.+ +
T Consensus 302 ~S~cnDI~~~---~~~~~SgH~-----------------DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-s 360 (459)
T KOG0288|consen 302 GSQCNDIVCS---ISDVISGHF-----------------DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-S 360 (459)
T ss_pred cccccceEec---ceeeeeccc-----------------ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-c
Confidence 3567899886 345555532 245666665544444333333456788889999888776 7
Q ss_pred CCCeEEEEEecCCCCCceee---ecCC--CCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC-CcEEEEEecC
Q 048181 219 TGNRTLKYWLRGPRANSFDI---INFQ--AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF-GAVLDTISFE 292 (310)
Q Consensus 219 ~~~~I~~~~~~~~~~g~~~~---~~l~--g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~p 292 (310)
..+.+-.+++.+. ..... .+.. .--....+.+ +|.+..|.... +.|..++-. ||+.-++..+
T Consensus 361 RDdtl~viDlRt~--eI~~~~sA~g~k~asDwtrvvfSp--d~~YvaAGS~d--------gsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 361 RDDTLKVIDLRTK--EIRQTFSAEGFKCASDWTRVVFSP--DGSYVAAGSAD--------GSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred CCCceeeeecccc--cEEEEeeccccccccccceeEECC--CCceeeeccCC--------CcEEEEEccCceEEEEeccC
Confidence 7777777876542 22111 1111 0123456677 65544443333 357777754 4444444444
No 304
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=50.59 E-value=1.8e+02 Score=25.72 Aligned_cols=175 Identities=14% Similarity=0.137 Sum_probs=84.0
Q ss_pred eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181 24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY 103 (310)
Q Consensus 24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~ 103 (310)
.+++.+|-...+---+++ +|.+||---....|.|++.......-...-+. .|.- ......-..-.=..+++|
T Consensus 59 ~~~~~lp~~~~gTg~VVy--nGs~yynk~~t~~ivky~l~~~~~~~~~~lp~----a~y~-~~~~y~~~g~sdiD~avD- 130 (249)
T KOG3545|consen 59 AEKYRLPYSWDGTGHVVY--NGSLYYNKAGTRNIIKYDLETRTVAGSAALPY----AGYH-NPSPYYWGGHSDIDLAVD- 130 (249)
T ss_pred ceEEeCCCCccccceEEE--cceEEeeccCCcceEEEEeecceeeeeeeccc----cccC-CCcccccCCCccccceec-
Confidence 345566644444434444 47777776667778899887532211000000 0000 000000001111467786
Q ss_pred CCCeEEEEeC---CCc---EEEEeCCCCeEEEee-ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181 104 ATRQLYIADA---YSG---LLVVGPNGRLATQLA-TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND 176 (310)
Q Consensus 104 ~~g~LyVad~---~~g---i~~id~~~~~~~~~~-~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~ 176 (310)
+..|||.-+ ..+ |-++|+.+-+.+... +..+- -..-|..-+. |.+|+.++...
T Consensus 131 -E~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k--~~~~~aF~iC---GvLY~v~S~~~-------------- 190 (249)
T KOG3545|consen 131 -ENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPK--RSAGNAFMIC---GVLYVVHSYNC-------------- 190 (249)
T ss_pred -ccceeEEecccccCCcEEeeccCHHHhheeeeeccccCC--CCcCceEEEe---eeeEEEecccc--------------
Confidence 455777532 223 357887553333222 22221 1122344443 89999987641
Q ss_pred CCceE-EEEcCCCCeEEEee----cCCCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181 177 STGRL-LSYNPRSSQVTVLL----RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWL 228 (310)
Q Consensus 177 ~~G~l-~~~d~~~g~~~~~~----~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~ 228 (310)
.+..+ +.+|..+++.+... ........|-..|-.+.||+=| ++-...|++
T Consensus 191 ~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~wd--ng~~l~y~l 245 (249)
T KOG3545|consen 191 THTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAWD--NGHQLTYNL 245 (249)
T ss_pred CCceEEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEec--CCcEEEEEe
Confidence 12234 66776655543221 2233456888888556688754 344445544
No 305
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=50.39 E-value=1.9e+02 Score=25.95 Aligned_cols=105 Identities=8% Similarity=0.111 Sum_probs=56.3
Q ss_pred CCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181 31 PKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY 109 (310)
Q Consensus 31 ~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly 109 (310)
+.-...+.++|++. -.++.+...+..|..++--.+.-... . ...+.-.-+++.+.++.+.
T Consensus 62 gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~------------------i-~~~~eni~i~wsp~g~~~~ 122 (313)
T KOG1407|consen 62 GHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR------------------I-ETKGENINITWSPDGEYIA 122 (313)
T ss_pred CCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE------------------e-eccCcceEEEEcCCCCEEE
Confidence 33345677899975 46788888888888887553221110 0 1111222356654444555
Q ss_pred EEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCC
Q 048181 110 IADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDAS 160 (310)
Q Consensus 110 Vad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~ 160 (310)
+.+....|..||..+.++ + ... +...+.|-++..- .+++||-..+
T Consensus 123 ~~~kdD~it~id~r~~~~--~-~~~--~~~~e~ne~~w~~-~nd~Fflt~G 167 (313)
T KOG1407|consen 123 VGNKDDRITFIDARTYKI--V-NEE--QFKFEVNEISWNN-SNDLFFLTNG 167 (313)
T ss_pred EecCcccEEEEEecccce--e-ehh--cccceeeeeeecC-CCCEEEEecC
Confidence 555555577777654322 1 111 1234467777775 4667665544
No 306
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=50.33 E-value=3.2e+02 Score=28.53 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=45.5
Q ss_pred CCeEEEEeC---------CCc-EEEEeCCCCeEEEeeccC---------CCccc--cCc---cceEEeCCCCeEEEEcCC
Q 048181 105 TRQLYIADA---------YSG-LLVVGPNGRLATQLATGA---------EGQAF--HFL---DGLDVDQGTGVVYFTDAS 160 (310)
Q Consensus 105 ~g~LyVad~---------~~g-i~~id~~~~~~~~~~~~~---------~g~~~--~~p---ndvavd~~~G~lyvtd~~ 160 (310)
++.+||... ..| |..+|.++|+..--.... +++.. ..+ .-+++|++.|.+|+--.+
T Consensus 316 ~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn 395 (764)
T TIGR03074 316 GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGN 395 (764)
T ss_pred CCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCC
Confidence 577777532 123 778898888764221110 11111 122 357899988899985432
Q ss_pred CccCc-cceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181 161 GVYDF-RTIVKLNITNDSTGRLLSYNPRSSQVTV 193 (310)
Q Consensus 161 ~~~~~-~~~~~~~~~~~~~G~l~~~d~~~g~~~~ 193 (310)
..-.. ... .......-.++|+-+|++||+++-
T Consensus 396 ~~pd~~g~~-r~~~~n~y~~slvALD~~TGk~~W 428 (764)
T TIGR03074 396 QTPDQWGGD-RTPADEKYSSSLVALDATTGKERW 428 (764)
T ss_pred ccccccCCc-cccCcccccceEEEEeCCCCceEE
Confidence 11000 000 000012235789999999887653
No 307
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=50.30 E-value=3.1e+02 Score=28.36 Aligned_cols=160 Identities=11% Similarity=0.125 Sum_probs=90.8
Q ss_pred eecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCce-ee
Q 048181 20 SIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FG 98 (310)
Q Consensus 20 ~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~G 98 (310)
+..-.++++++.. .-++.+.|||.++.++..+..+..+-.+. ..-+.. .. | .. -| ..
T Consensus 498 sl~~~rtLel~dd---vL~v~~Spdgk~LaVsLLdnTVkVyflDt-lKFfls--------LY-G-------Hk--LPV~s 555 (888)
T KOG0306|consen 498 SLKHTRTLELEDD---VLCVSVSPDGKLLAVSLLDNTVKVYFLDT-LKFFLS--------LY-G-------HK--LPVLS 555 (888)
T ss_pred eeccceEEecccc---EEEEEEcCCCcEEEEEeccCeEEEEEecc-eeeeee--------ec-c-------cc--cceeE
Confidence 3444567888853 55788999999999999888888776653 221110 00 0 11 12 24
Q ss_pred EEEecCCCeEEEEeC-CCc--EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 99 LALHYATRQLYIADA-YSG--LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 99 la~d~~~g~LyVad~-~~g--i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
|-+. .+..+.|+.. ... ||-.|...=...-++.. -..--+.+-|+ ..+|||-.
T Consensus 556 mDIS-~DSklivTgSADKnVKiWGLdFGDCHKS~fAHd------DSvm~V~F~P~-~~~FFt~g---------------- 611 (888)
T KOG0306|consen 556 MDIS-PDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD------DSVMSVQFLPK-THLFFTCG---------------- 611 (888)
T ss_pred Eecc-CCcCeEEeccCCCceEEeccccchhhhhhhccc------CceeEEEEccc-ceeEEEec----------------
Confidence 5554 5777887643 333 55555432111111110 11224566674 66777643
Q ss_pred CCCceEEEEcCCCC-eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181 176 DSTGRLLSYNPRSS-QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW 227 (310)
Q Consensus 176 ~~~G~l~~~d~~~g-~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~ 227 (310)
.+|.+-++|.+.- .++.+.....-...+|.+|+|+ ..|+.+..+.|+-+.
T Consensus 612 -KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 612 -KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWE 662 (888)
T ss_pred -CcceEEeechhhhhhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeee
Confidence 3567778875432 2334444455567899999998 456666666666554
No 308
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=48.70 E-value=1.3e+02 Score=30.16 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=48.2
Q ss_pred EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecC--CCCCceeeeCCCCCCcEEEE
Q 048181 193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINF--QAKPHNIKRNPGLLQTFWEA 261 (310)
Q Consensus 193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l--~g~Pdgl~~d~~~dG~l~va 261 (310)
+-+.++-.|+=|||++....+-|+...-+.|..|.+...........++ ...|-||++=. |.-|.+-
T Consensus 333 V~IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFlt--dklLLil 401 (671)
T PF15390_consen 333 VSIPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLT--DKLLLIL 401 (671)
T ss_pred eccccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEcc--CCeEEEE
Confidence 3456778899999999999888888888999999886432222222233 24799999988 7755443
No 309
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=48.10 E-value=2.2e+02 Score=26.13 Aligned_cols=170 Identities=14% Similarity=0.082 Sum_probs=88.2
Q ss_pred CCCceeeEEE-ecC-CCeEEEEeCC-Cc-EEEEeCCCCeEE--EeeccCCCccccCccceEEeCCCCeEEEEcCCCccCc
Q 048181 92 ICRRTFGLAL-HYA-TRQLYIADAY-SG-LLVVGPNGRLAT--QLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDF 165 (310)
Q Consensus 92 ~~~~P~Gla~-d~~-~g~LyVad~~-~g-i~~id~~~~~~~--~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~ 165 (310)
+..+|.|++. .+. +..++++-+. .| |..+|+...+.. .+.. .+.....-+++.- +|.+..|-+.
T Consensus 132 t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~----AH~s~Iacv~Ln~-~Gt~vATaSt----- 201 (346)
T KOG2111|consen 132 TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN----AHDSDIACVALNL-QGTLVATAST----- 201 (346)
T ss_pred cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE----cccCceeEEEEcC-CccEEEEecc-----
Confidence 4456888764 222 3344444322 23 666666543321 1111 0112223466666 4888776543
Q ss_pred cceeEeeeecCCCceEEEE-cCCCCeE-EEeecCCCCC--ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee---e
Q 048181 166 RTIVKLNITNDSTGRLLSY-NPRSSQV-TVLLRNLTGP--AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD---I 238 (310)
Q Consensus 166 ~~~~~~~~~~~~~G~l~~~-d~~~g~~-~~~~~~l~~p--nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~---~ 238 (310)
+|.|.|+ |..+|+. ..+..+...+ .-|+|||+.. ++.+.+..+.|..|.+.....+..+ +
T Consensus 202 ------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~~~~~~SSl 268 (346)
T KOG2111|consen 202 ------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTENTEDESSSL 268 (346)
T ss_pred ------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCCCccccccc
Confidence 4777775 5555543 3344444433 5899999987 4556678888888887653222110 0
Q ss_pred --e--cCCCCC------ceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCC
Q 048181 239 --I--NFQAKP------HNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEA 293 (310)
Q Consensus 239 --~--~l~g~P------dgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~ 293 (310)
. -+|.+- -.+.+.+ |.-++..++... -.|+.+=.||.-.+..=.|+
T Consensus 269 ~~~~~~lpky~~S~wS~~~f~l~~---~~~~~~~fg~~~------nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 269 SFKRLVLPKYFSSEWSFAKFQLPQ---GTQCIIAFGSET------NTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred cccccccchhcccceeEEEEEccC---CCcEEEEecCCC------CeEEEEEeCCcEEEEEeccc
Confidence 1 122111 1233443 555555555421 24666666677666666664
No 310
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.64 E-value=2.2e+02 Score=25.59 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=23.5
Q ss_pred CceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 201 PAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 201 pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
+.|+|+- ||. .+|+--.+||||.|.+.+
T Consensus 137 aEGLAvr-dG~-~~VsfEr~hRI~iyp~~p 164 (340)
T COG4246 137 AEGLAVR-DGD-ALVSFERDHRIWIYPVPP 164 (340)
T ss_pred cccceEe-cCc-eEEEeeccceeEEeccCC
Confidence 5799996 887 678888999999998764
No 311
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=46.40 E-value=2.1e+02 Score=25.33 Aligned_cols=130 Identities=8% Similarity=0.116 Sum_probs=64.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee-eEEEecCCCe-EEEEeCCCcEEEEe
Q 048181 44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF-GLALHYATRQ-LYIADAYSGLLVVG 121 (310)
Q Consensus 44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~-Gla~d~~~g~-LyVad~~~gi~~id 121 (310)
.+..++++..+|++++++-..+... ....+.|. .+.+. ++++ +++.....-+..+|
T Consensus 154 ~~heIvaGS~DGtvRtydiR~G~l~---------------------sDy~g~pit~vs~s-~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 154 AEHEIVAGSVDGTVRTYDIRKGTLS---------------------SDYFGHPITSVSFS-KDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred cccEEEeeccCCcEEEEEeecceee---------------------hhhcCCcceeEEec-CCCCEEEEeeccceeeecc
Confidence 3556777777777777765422221 13455663 67786 5555 44444444477788
Q ss_pred CCCCeEEEeeccCCCc-cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCC
Q 048181 122 PNGRLATQLATGAEGQ-AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG 200 (310)
Q Consensus 122 ~~~~~~~~~~~~~~g~-~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~ 200 (310)
.++|++ ...+-|. ...+--|-.+... .. +++....+|.+|.+|....+......-...
T Consensus 212 k~tGkl---L~sYkGhkn~eykldc~l~qs-dt-----------------hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~ 270 (307)
T KOG0316|consen 212 KETGKL---LKSYKGHKNMEYKLDCCLNQS-DT-----------------HVFSGSEDGKVYFWDLVDETQISKLSVVST 270 (307)
T ss_pred cchhHH---HHHhcccccceeeeeeeeccc-ce-----------------eEEeccCCceEEEEEeccceeeeeeccCCc
Confidence 888764 3334331 1112222223221 22 233445678899988754433222211112
Q ss_pred --CceeEEccCCCEEEEE
Q 048181 201 --PAGVAISVDSSFLLVS 216 (310)
Q Consensus 201 --pnGIa~~~dg~~Lyv~ 216 (310)
-..|++.|.-..++++
T Consensus 271 v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 271 VIVTDLSCHPTMDDFITA 288 (307)
T ss_pred eeEEeeecccCccceeEe
Confidence 2345566654434433
No 312
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=45.06 E-value=2.7e+02 Score=26.24 Aligned_cols=175 Identities=16% Similarity=0.160 Sum_probs=99.1
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCC-CCccccC--CCccccCCCCCC--ce-eeEEEecC
Q 048181 32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPT-RSKAVCD--GTTNLDLGPICR--RT-FGLALHYA 104 (310)
Q Consensus 32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~-~~~~~~~--g~~~~~~~~~~~--~P-~Gla~d~~ 104 (310)
.-...+++.++++|..+.++.-+..|--++..... ......+.. ......+ ++...++....+ .| ..+.+. +
T Consensus 192 Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d 270 (423)
T KOG0313|consen 192 HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS-D 270 (423)
T ss_pred cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc-C
Confidence 33567899999999988888877777666621111 111000000 0000000 000001111111 12 245664 5
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEE-EeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181 105 TRQLYIADAYSGLLVVGPNGRLAT-QLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183 (310)
Q Consensus 105 ~g~LyVad~~~gi~~id~~~~~~~-~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~ 183 (310)
.+.+|-+...+.|.+.|..++... .+.+ + ...|.+...+ .-++..+.+.. --+..
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~---~---ksl~~i~~~~-~~~Ll~~gssd-----------------r~irl 326 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTT---N---KSLNCISYSP-LSKLLASGSSD-----------------RHIRL 326 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeec---C---cceeEeeccc-ccceeeecCCC-----------------Cceee
Confidence 677887777777888898876432 2221 2 2357888888 47777776543 12445
Q ss_pred EcCCCCeEEE----eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181 184 YNPRSSQVTV----LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 184 ~d~~~g~~~~----~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
+||.++.-.+ +...-.+-.++-++|...+++++-+..+.+...|+...
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 6776553322 22333466799999998899999999988888877543
No 313
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=44.57 E-value=2.8e+02 Score=28.19 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=59.5
Q ss_pred CCceeeEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEE-EcCCCccCccceeE
Q 048181 93 CRRTFGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYF-TDASGVYDFRTIVK 170 (310)
Q Consensus 93 ~~~P~Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyv-td~~~~~~~~~~~~ 170 (310)
..+-.|+|+. .+|+...+-...+ |+++.+.+++. .+.. ..|.--.+---+.... +|++.+ +....
T Consensus 720 tdqIf~~AWS-pdGr~~AtVcKDg~~rVy~Prs~e~-pv~E-g~gpvgtRgARi~wac-dgr~viv~Gfdk--------- 786 (1012)
T KOG1445|consen 720 TDQIFGIAWS-PDGRRIATVCKDGTLRVYEPRSREQ-PVYE-GKGPVGTRGARILWAC-DGRIVIVVGFDK--------- 786 (1012)
T ss_pred cCceeEEEEC-CCCcceeeeecCceEEEeCCCCCCC-cccc-CCCCccCcceeEEEEe-cCcEEEEecccc---------
Confidence 3456799996 7898876655554 88888876542 2211 1111001111222233 244333 32211
Q ss_pred eeeecCCCceEEEEcCCCCeEE----EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 171 LNITNDSTGRLLSYNPRSSQVT----VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 171 ~~~~~~~~G~l~~~d~~~g~~~----~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
...-+|..||.++-... ..++-...|-=--+++|.+.||++-.+..+|+.|.+-
T Consensus 787 -----~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 787 -----SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred -----cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 11123444554322111 1111111222223678888999999899999999864
No 314
>PHA02790 Kelch-like protein; Provisional
Probab=44.21 E-value=3.1e+02 Score=26.62 Aligned_cols=146 Identities=9% Similarity=-0.016 Sum_probs=75.8
Q ss_pred CCCeEEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181 104 ATRQLYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR 180 (310)
Q Consensus 104 ~~g~LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~ 180 (310)
-+|+||+.-+. ..+.++|+.+++...+.. ... +.... .+++. +|+||+...... ....
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~-l~~-~r~~~-~~~~~--~g~IYviGG~~~--------------~~~~ 377 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS-LLK-PRCNP-AVASI--NNVIYVIGGHSE--------------TDTT 377 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCC-CCC-CCccc-EEEEE--CCEEEEecCcCC--------------CCcc
Confidence 37999997543 237888887765544432 211 11111 33333 599999754210 1135
Q ss_pred EEEEcCCCCeEEEeecCCCCC--ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC--CCCceeeeCCCCC
Q 048181 181 LLSYNPRSSQVTVLLRNLTGP--AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ--AKPHNIKRNPGLL 255 (310)
Q Consensus 181 l~~~d~~~g~~~~~~~~l~~p--nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~--g~Pdgl~~d~~~d 255 (310)
+.+|||.+.+.+.+. .+..| ..-+..-+| .|||.- +.+.+|++.. ...+. ..++ ..--++++- +
T Consensus 378 ve~ydp~~~~W~~~~-~m~~~r~~~~~~~~~~-~IYv~G---G~~e~ydp~~---~~W~~~~~m~~~r~~~~~~v~---~ 446 (480)
T PHA02790 378 TEYLLPNHDQWQFGP-STYYPHYKSCALVFGR-RLFLVG---RNAEFYCESS---NTWTLIDDPIYPRDNPELIIV---D 446 (480)
T ss_pred EEEEeCCCCEEEeCC-CCCCccccceEEEECC-EEEEEC---CceEEecCCC---CcEeEcCCCCCCccccEEEEE---C
Confidence 778999877665533 23322 112223344 599864 3466787643 34443 3333 122345554 4
Q ss_pred CcEEEEEecCCCCCCCCceeeEEECCC
Q 048181 256 QTFWEAAIITRQPAGTPVPIGQRISAF 282 (310)
Q Consensus 256 G~l~va~~~~~~~~~~~~~~v~~~~~~ 282 (310)
|.||+....... .....+-+|||+
T Consensus 447 ~~IYviGG~~~~---~~~~~ve~Yd~~ 470 (480)
T PHA02790 447 NKLLLIGGFYRG---SYIDTIEVYNNR 470 (480)
T ss_pred CEEEEECCcCCC---cccceEEEEECC
Confidence 789987643210 001245666664
No 315
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.15 E-value=2.9e+02 Score=26.65 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 179 GRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
+.|..||..++++..-++ ......+.|+++|+++-+.-..+--|.+|+.+
T Consensus 126 ~~i~~yDw~~~~~i~~i~-v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 126 DFICFYDWETGKLIRRID-VSAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp TEEEEE-TTT--EEEEES-S-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred CCEEEEEhhHcceeeEEe-cCCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 468888877665433332 11137999999998665554333345556554
No 316
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=43.90 E-value=3.5e+02 Score=27.12 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=56.2
Q ss_pred CceeeEEEecCCCeEEEEeC-CCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181 94 RRTFGLALHYATRQLYIADA-YSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 94 ~~P~Gla~d~~~g~LyVad~-~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~ 171 (310)
..+..|.+. .+ .|-++-+ ..| ++.+|+.+.+...+..-...-|......+.-+. +..++-+|...
T Consensus 229 ~svTal~F~-d~-gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~-q~~v~S~Dk~~---------- 295 (703)
T KOG2321|consen 229 PSVTALKFR-DD-GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ-QNKVVSMDKRI---------- 295 (703)
T ss_pred CcceEEEec-CC-ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC-CceEEecchHH----------
Confidence 346678884 33 4545433 234 888887764322221111111222222222232 24555555321
Q ss_pred eeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181 172 NITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW 227 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~ 227 (310)
+-.+|+.+|+.-...+...--|.+|+-|++..+|++. .+..+..|-
T Consensus 296 ---------~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An-e~~~m~~yy 341 (703)
T KOG2321|consen 296 ---------LKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN-ESSKMHTYY 341 (703)
T ss_pred ---------hhhcccccCCceeeccccCCcCceeeecCCceEEEec-CCCcceeEE
Confidence 2224666666655566666679999999988555543 444444443
No 317
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=43.58 E-value=2.7e+02 Score=25.70 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=73.8
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181 37 ESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY 114 (310)
Q Consensus 37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~ 114 (310)
..+-+.+.|++|++...+|.|.-++.-... .++. .......-....+. ++|+...+.+.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~------------------~AH~gsevcSa~Ft-kn~kyiLsSG~ 325 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG------------------NAHGGSEVCSAVFT-KNGKYILSSGK 325 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH------------------hhcCCceeeeEEEc-cCCeEEeecCC
Confidence 345677789999999888988877754321 1221 01112223345564 67776666554
Q ss_pred Cc-EEEEeCCCCeEEEeec--cCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181 115 SG-LLVVGPNGRLATQLAT--GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV 191 (310)
Q Consensus 115 ~g-i~~id~~~~~~~~~~~--~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~ 191 (310)
.. +......+++....-. ...|......+.+--+. +..+.+-| ...+.+..+|..+...
T Consensus 326 DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht-EdyVl~pD-----------------Eas~slcsWdaRtadr 387 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT-EDYVLFPD-----------------EASNSLCSWDARTADR 387 (430)
T ss_pred cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc-cceEEccc-----------------cccCceeeccccchhh
Confidence 43 2233444554322111 11122222222222222 23333333 2346788888766543
Q ss_pred EEeec--CCCCCceeEEccCCCEEEEEecCCCeE
Q 048181 192 TVLLR--NLTGPAGVAISVDSSFLLVSEFTGNRT 223 (310)
Q Consensus 192 ~~~~~--~l~~pnGIa~~~dg~~Lyv~d~~~~~I 223 (310)
..++. .-..+.-|.-||.+- .|++-+...|.
T Consensus 388 ~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~ra 420 (430)
T KOG0640|consen 388 VALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRA 420 (430)
T ss_pred hhhcccCCCCCceEEEeCCCCC-ceeeeccccee
Confidence 33321 122456677788775 66666655554
No 318
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=42.53 E-value=2e+02 Score=25.40 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=52.4
Q ss_pred CCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCc----------cceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181 105 TRQLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFL----------DGLDVDQGTGVVYFTDASGVYDFRTIVKLNI 173 (310)
Q Consensus 105 ~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~p----------ndvavd~~~G~lyvtd~~~~~~~~~~~~~~~ 173 (310)
+|.+|.--.. ..|+++++.+.... -....++.....+ .|+|+|+. | ||+-=...
T Consensus 77 nGs~yynk~~t~~ivky~l~~~~~~-~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~-G-LWviYat~------------ 141 (249)
T KOG3545|consen 77 NGSLYYNKAGTRNIIKYDLETRTVA-GSAALPYAGYHNPSPYYWGGHSDIDLAVDEN-G-LWVIYATP------------ 141 (249)
T ss_pred cceEEeeccCCcceEEEEeecceee-eeeeccccccCCCcccccCCCccccceeccc-c-eeEEeccc------------
Confidence 6777765443 45999998874321 1112222222223 68999973 5 66632211
Q ss_pred ecCCCce--EEEEcCCCCeEEEeec-CC---CCCceeEEccCCCEEEEEecCC
Q 048181 174 TNDSTGR--LLSYNPRSSQVTVLLR-NL---TGPAGVAISVDSSFLLVSEFTG 220 (310)
Q Consensus 174 ~~~~~G~--l~~~d~~~g~~~~~~~-~l---~~pnGIa~~~dg~~Lyv~d~~~ 220 (310)
...|. |-++||.+-+++..+. .+ ...|+..+. | .||+.++..
T Consensus 142 --~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~iC--G-vLY~v~S~~ 189 (249)
T KOG3545|consen 142 --ENAGTIVLSKLDPETLEVERTWNTTLPKRSAGNAFMIC--G-VLYVVHSYN 189 (249)
T ss_pred --ccCCcEEeeccCHHHhheeeeeccccCCCCcCceEEEe--e-eeEEEeccc
Confidence 11232 4678886666555442 22 345666666 5 599988754
No 319
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=41.67 E-value=3.6e+02 Score=26.68 Aligned_cols=103 Identities=12% Similarity=0.019 Sum_probs=52.3
Q ss_pred CCCceEEEEcCCCCeEEEeecCCCCCceeEEcc---CCCEEEEEecCCCeEEEEEecCCCCCce-ee-ecCCCCCceeee
Q 048181 176 DSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISV---DSSFLLVSEFTGNRTLKYWLRGPRANSF-DI-INFQAKPHNIKR 250 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~---dg~~Lyv~d~~~~~I~~~~~~~~~~g~~-~~-~~l~g~Pdgl~~ 250 (310)
.+.|.++-|+...|+++.....-..++++...- +-..|| +-....++..+.+.. ... .. ..-+..+-.+++
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciy-S~~ad~~v~~~~~~~---~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIY-SVGADLKVVYILEKE---KVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceE-ecCCceeEEEEeccc---ceeeeeeccCCCccceEEE
Confidence 456778888777777776655433443333222 222233 222333443333321 111 11 122335778899
Q ss_pred CCCCCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCCC
Q 048181 251 NPGLLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEAQ 294 (310)
Q Consensus 251 d~~~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~~ 294 (310)
.+ ||.+.+.... .+-.+| .+++++..+.-..+
T Consensus 153 s~--D~~~l~~as~----------~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 153 SP--DGKILLTASR----------QIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred cC--CCCEEEeccc----------eEEEEEccCceEEEEecCCCc
Confidence 88 8877665443 344455 45666666655544
No 320
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=41.33 E-value=2.5e+02 Score=24.66 Aligned_cols=161 Identities=13% Similarity=0.020 Sum_probs=82.7
Q ss_pred ceeeEEEecCCCeEEE-Ee---CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181 95 RTFGLALHYATRQLYI-AD---AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK 170 (310)
Q Consensus 95 ~P~Gla~d~~~g~LyV-ad---~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~ 170 (310)
.+...++. .+|..+. .. ....++.....+ ....+. .+..+..| .+|++ |.+|+.+....
T Consensus 25 ~~~s~AvS-~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~---~g~~l~~P---S~d~~-g~~W~v~~~~~-------- 87 (253)
T PF10647_consen 25 DVTSPAVS-PDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVL---TGGSLTRP---SWDPD-GWVWTVDDGSG-------- 87 (253)
T ss_pred cccceEEC-CCCCeEEEEEEcCCCCEEEEEcCCC-cceeec---cCCccccc---cccCC-CCEEEEEcCCC--------
Confidence 34456775 4554332 22 233477766554 333322 23344444 78884 99999876431
Q ss_pred eeeecCCCceEEEEcCCCCeEE---EeecCCC-CCceeEEccCCCEEEEEe--cCCCeEEEEEecCCCCC-ceee-----
Q 048181 171 LNITNDSTGRLLSYNPRSSQVT---VLLRNLT-GPAGVAISVDSSFLLVSE--FTGNRTLKYWLRGPRAN-SFDI----- 238 (310)
Q Consensus 171 ~~~~~~~~G~l~~~d~~~g~~~---~~~~~l~-~pnGIa~~~dg~~Lyv~d--~~~~~I~~~~~~~~~~g-~~~~----- 238 (310)
..++++.+. +++.. +-...+. .-..+.+||||..+-+.- ...++|+.-.+.-...| ...+
T Consensus 88 -------~~~~~~~~~-~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~ 159 (253)
T PF10647_consen 88 -------GVRVVRDSA-SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR 159 (253)
T ss_pred -------ceEEEEecC-CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE
Confidence 112222111 12221 1112222 346899999998666544 23577776655422223 1111
Q ss_pred --ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeE-EECCCCcEEEEE
Q 048181 239 --INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQ-RISAFGAVLDTI 289 (310)
Q Consensus 239 --~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~-~~~~~G~~~~~~ 289 (310)
.........+.... ++.|.|....... .+. .+..+|-....+
T Consensus 160 ~~~~~~~~v~~v~W~~--~~~L~V~~~~~~~-------~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 160 VAPPLLSDVTDVAWSD--DSTLVVLGRSAGG-------PVVRLVSVDGGPSTPL 204 (253)
T ss_pred ecccccCcceeeeecC--CCEEEEEeCCCCC-------ceeEEEEccCCccccc
Confidence 12123456788888 8888888666532 223 366666555444
No 321
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=41.29 E-value=2.8e+02 Score=25.37 Aligned_cols=155 Identities=11% Similarity=0.143 Sum_probs=0.0
Q ss_pred eecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeE
Q 048181 20 SIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGL 99 (310)
Q Consensus 20 ~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gl 99 (310)
++..+.++.||++.- +.|-.-.++++...++.|..++..+..+.+....+ +..-+-..+
T Consensus 146 ~~~pv~t~~LPeRvY-----a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~S----------------pLk~Q~R~v 204 (347)
T KOG0647|consen 146 SSNPVATLQLPERVY-----AADVLYPMAVVATAERHIAVYNLENPPTEFKRIES----------------PLKWQTRCV 204 (347)
T ss_pred CCCeeeeeeccceee-----ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcC----------------cccceeeEE
Q ss_pred EEecCCCeEEEEeCCCc---EEEEeC---CCCeEEEeeccCC-Ccc-ccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181 100 ALHYATRQLYIADAYSG---LLVVGP---NGRLATQLATGAE-GQA-FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL 171 (310)
Q Consensus 100 a~d~~~g~LyVad~~~g---i~~id~---~~~~~~~~~~~~~-g~~-~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~ 171 (310)
++. .++..|..-.-.| |.-||. ..+..-.--.... ... ....|++++.|. -..++|-.+.
T Consensus 205 a~f-~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~-hgtlvTaGsD---------- 272 (347)
T KOG0647|consen 205 ACF-QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV-HGTLVTAGSD---------- 272 (347)
T ss_pred EEE-ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc-cceEEEecCC----------
Q ss_pred eeecCCCceEEEEcCCCCeEEEeecCCCCC-ceeEEccCCCEEEE
Q 048181 172 NITNDSTGRLLSYNPRSSQVTVLLRNLTGP-AGVAISVDSSFLLV 215 (310)
Q Consensus 172 ~~~~~~~G~l~~~d~~~g~~~~~~~~l~~p-nGIa~~~dg~~Lyv 215 (310)
|++..+|.+....-.--+....| .--+|+.+|+ +|+
T Consensus 273 -------Gtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~-ifa 309 (347)
T KOG0647|consen 273 -------GTFSFWDKDARTKLKTSETHPQPITCCSFNRNGS-IFA 309 (347)
T ss_pred -------ceEEEecchhhhhhhccCcCCCccceeEecCCCC-EEE
No 322
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=39.66 E-value=77 Score=20.11 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=22.4
Q ss_pred ceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181 202 AGVAISVDSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 202 nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
+-++++|... |+..-+.+++|+.|.+++.
T Consensus 15 ~~~~w~P~md-LiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 15 SCMSWCPTMD-LIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEEECCCCC-EEEEEECCCeEEEEECCCc
Confidence 4688999988 5566667889998888653
No 323
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=39.52 E-value=2.3e+02 Score=27.62 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=20.9
Q ss_pred CCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 199 TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 199 ~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
..|.=+++||.+++|.+-+. +.|.++.++.
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~~--gki~~~~l~N 387 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSEDQ--GKIRLAQLEN 387 (733)
T ss_pred cCcceeeeCcccchheeecC--CceEEEEecC
Confidence 46788999999987766544 5566666554
No 324
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=39.22 E-value=3.2e+02 Score=25.33 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=36.9
Q ss_pred EEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEec
Q 048181 213 LLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISF 291 (310)
Q Consensus 213 Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~ 291 (310)
.+.+.+....|.-+++.|...+.....++. -...++.+ +|++..++.=.-.. +..=+.|..||+.-++...
T Consensus 201 ~imsas~dt~i~lw~lkGq~L~~idtnq~~--n~~aavSP--~GRFia~~gFTpDV----kVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLKGQLLQSIDTNQSS--NYDAAVSP--DGRFIAVSGFTPDV----KVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred EEEEecCCCcEEEEecCCceeeeecccccc--ccceeeCC--CCcEEEEecCCCCc----eEEEEEeccCcchhhhhhh
Confidence 445666677788788776543333222222 22367888 88776665433111 1122456667754444333
No 325
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.56 E-value=3.4e+02 Score=25.49 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=37.3
Q ss_pred CCCceEEEEcCCCCeEEE-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 176 DSTGRLLSYNPRSSQVTV-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
..++.+-.+|..++..-. +.....+-.|++|+|.|++| ++-..+..+..+++..
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYI-LSCADDKTLRVWDLKN 365 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEE-EEEecCCcEEEEEecc
Confidence 445667777777776533 33445678899999999854 4556677788888753
No 326
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=38.30 E-value=3.5e+02 Score=25.49 Aligned_cols=37 Identities=5% Similarity=0.045 Sum_probs=25.3
Q ss_pred EeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECC
Q 048181 27 ILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAP 63 (310)
Q Consensus 27 ~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~ 63 (310)
+.++|-....+++++.+.--.+|+.-.++.|--+|.+
T Consensus 187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred EeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 3556667777888887766655666666667677766
No 327
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=37.30 E-value=5e+02 Score=27.05 Aligned_cols=153 Identities=15% Similarity=0.147 Sum_probs=75.8
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCC-ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCc
Q 048181 38 SIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSG 116 (310)
Q Consensus 38 gia~d~~G~l~~~d~~~g~I~r~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~g 116 (310)
..++.++++.+-++..+|||+.+..-+ .-.... |. ...| ....-.++++. .+|..+.+-+..+
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t----------~t---~lHW--H~~~V~~L~fS-~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSET----------CT---LLHW--HHDEVNSLSFS-SDGAYLLSGGREG 273 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEecccccccccc----------ce---EEEe--cccccceeEEe-cCCceEeecccce
Confidence 567888888777777889988776443 110000 00 0001 00123478886 4553333433344
Q ss_pred -EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181 117 -LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL 195 (310)
Q Consensus 117 -i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~ 195 (310)
+.+...++++ +++.....+ + .-++.++|+ +..|-.-... .++..+...+.+.+..+
T Consensus 274 VLv~Wq~~T~~-kqfLPRLgs-~---I~~i~vS~d-s~~~sl~~~D-----------------NqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 274 VLVLWQLETGK-KQFLPRLGS-P---ILHIVVSPD-SDLYSLVLED-----------------NQIHLIKASDLEIKSTI 330 (792)
T ss_pred EEEEEeecCCC-cccccccCC-e---eEEEEEcCC-CCeEEEEecC-----------------ceEEEEeccchhhhhhc
Confidence 4444555555 344333222 2 247899984 8888654321 12222211111111111
Q ss_pred c------------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 196 R------------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 196 ~------------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
. .-..+.+++++|--+ ..+=....++|.-|++-.
T Consensus 331 sgi~~~~~~~k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 331 SGIKPPTPSTKTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred cCccCCCccccccccccceeEEEcCCCC-ceeecCCCceEEEEeccc
Confidence 1 123567888998443 334445667777777653
No 328
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=37.27 E-value=4.2e+02 Score=26.15 Aligned_cols=110 Identities=8% Similarity=0.142 Sum_probs=52.4
Q ss_pred eeEEEecCCCeEEE-EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181 97 FGLALHYATRQLYI-ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN 175 (310)
Q Consensus 97 ~Gla~d~~~g~LyV-ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~ 175 (310)
..|++. .+-++-+ |-....|..+|+....+ ...+.|.+ -...-|.++.++-+||-..
T Consensus 513 yALa~s-pDakvcFsccsdGnI~vwDLhnq~~---VrqfqGht-DGascIdis~dGtklWTGG----------------- 570 (705)
T KOG0639|consen 513 YALAIS-PDAKVCFSCCSDGNIAVWDLHNQTL---VRQFQGHT-DGASCIDISKDGTKLWTGG----------------- 570 (705)
T ss_pred hhhhcC-CccceeeeeccCCcEEEEEccccee---eecccCCC-CCceeEEecCCCceeecCC-----------------
Confidence 467776 4555544 43444488888876432 22333321 1123466676423444332
Q ss_pred CCCceEEEEcCCCCeEEEeecCC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181 176 DSTGRLLSYNPRSSQVTVLLRNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 176 ~~~G~l~~~d~~~g~~~~~~~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
.+..|-.+|...++- .....+ ..--.+..+|.+.+|.|- ..++.++....+++
T Consensus 571 -lDntvRcWDlregrq-lqqhdF~SQIfSLg~cP~~dWlavG-Mens~vevlh~skp 624 (705)
T KOG0639|consen 571 -LDNTVRCWDLREGRQ-LQQHDFSSQIFSLGYCPTGDWLAVG-MENSNVEVLHTSKP 624 (705)
T ss_pred -Cccceeehhhhhhhh-hhhhhhhhhheecccCCCccceeee-cccCcEEEEecCCc
Confidence 233455556543321 111111 122345566777755544 35566777766654
No 329
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=36.84 E-value=3.8e+02 Score=25.52 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCC
Q 048181 199 TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQ 267 (310)
Q Consensus 199 ~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~ 267 (310)
.-+..++|++|++ ..++-+..+.++.+++. +|...- ..-..++-|.+.|+ -+........-|+
T Consensus 124 ~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~---~G~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~ 188 (434)
T KOG1009|consen 124 DDIYDLAWSPDSN-FLVSGSVDNSVRLWDVH---AGQLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRH 188 (434)
T ss_pred cchhhhhccCCCc-eeeeeeccceEEEEEec---cceeEeeccccccccceeecch--hhhhhhhhccCcc
Confidence 4578899999997 56677778888888875 344432 22235799999999 7666666555553
No 330
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=36.67 E-value=1.6e+02 Score=28.11 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=27.4
Q ss_pred ceeEEccCCCEEEEEecCCCeEEEEEecCCC
Q 048181 202 AGVAISVDSSFLLVSEFTGNRTLKYWLRGPR 232 (310)
Q Consensus 202 nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~ 232 (310)
..|-+|=|.++|||+...-+-|++|+++.+.
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP~ 345 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDPK 345 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCCC
Confidence 5778888899999999999999999998764
No 331
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=36.47 E-value=3.6e+02 Score=25.19 Aligned_cols=151 Identities=9% Similarity=0.020 Sum_probs=78.5
Q ss_pred EEEEeCCCCeE--EEeeccCCCccccCccceEEeCCCCeEE-EEcCCCccCccceeEeeeecCCCceEEEEcCCCC----
Q 048181 117 LLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQGTGVVY-FTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS---- 189 (310)
Q Consensus 117 i~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~~G~ly-vtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g---- 189 (310)
|++....+... ..+....+. ++ .--++..+.+ |+.. ++-.... ..-.+|.++..++
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~-~~-~~~~~~~s~d-~~~l~i~~~~~~--------------~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDE-PF-WFVSVSRSKD-GRYLFISSSSGT--------------SESEVYLLDLDDGGSPD 266 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTC-TT-SEEEEEE-TT-SSEEEEEEESSS--------------SEEEEEEEECCCTTTSS
T ss_pred EEEEECCCChHhCeeEEeecCC-Cc-EEEEEEecCc-ccEEEEEEEccc--------------cCCeEEEEeccccCCCc
Confidence 67777665432 233332221 22 1336777875 5543 3322210 1135777777653
Q ss_pred -eEEEeecCCCCCceeEEccCCCEEEE-Eec--CCCeEEEEEecCCCCCcee--e-ecCC-CCCceeeeCCCCCCcEEEE
Q 048181 190 -QVTVLLRNLTGPAGVAISVDSSFLLV-SEF--TGNRTLKYWLRGPRANSFD--I-INFQ-AKPHNIKRNPGLLQTFWEA 261 (310)
Q Consensus 190 -~~~~~~~~l~~pnGIa~~~dg~~Lyv-~d~--~~~~I~~~~~~~~~~g~~~--~-~~l~-g~Pdgl~~d~~~dG~l~va 261 (310)
+.+.+......-...+-.. |..+|+ ++. .+++|.+++++.+...... + ..-. ..-.++.+.. +.|++.
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~---~~Lvl~ 342 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK---DYLVLS 342 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET---TEEEEE
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC---CEEEEE
Confidence 5555555443333333333 445665 443 4578999998865432222 2 1111 1345677765 456555
Q ss_pred EecCCCCCCCCceeeEEECCC-CcEEEEEecCCC
Q 048181 262 AIITRQPAGTPVPIGQRISAF-GAVLDTISFEAQ 294 (310)
Q Consensus 262 ~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~p~~ 294 (310)
..... .+++.+++.+ |+....+.+|..
T Consensus 343 ~~~~~------~~~l~v~~~~~~~~~~~~~~p~~ 370 (414)
T PF02897_consen 343 YRENG------SSRLRVYDLDDGKESREIPLPEA 370 (414)
T ss_dssp EEETT------EEEEEEEETT-TEEEEEEESSSS
T ss_pred EEECC------ccEEEEEECCCCcEEeeecCCcc
Confidence 54442 3689999999 999999999964
No 332
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=35.32 E-value=3.7e+02 Score=24.96 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=36.0
Q ss_pred CceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EEEE
Q 048181 201 PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FWEA 261 (310)
Q Consensus 201 pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~va 261 (310)
-.-++|+|-...++..-+..+++-.|.-++. +...+ .+-.|....|..-+ +|+ ||++
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~--~pl~llggh~gGvThL~~~e--dGn~lfsG 268 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--RPLQLLGGHGGGVTHLQWCE--DGNKLFSG 268 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCC--CceeeecccCCCeeeEEecc--CcCeeccc
Confidence 3567899977778888888888777765542 22222 22234566677777 774 5554
No 333
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=34.98 E-value=5.1e+02 Score=26.50 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=62.3
Q ss_pred CCcceEEEccCCCEEEEEeCCCeEEEEECCCc---eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181 34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDG---FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI 110 (310)
Q Consensus 34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV 110 (310)
.-..++.|.|.+..+.+...+..++.+.|+.. ++.....|.- ....+.-.|-.+. ++++.++
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~--------------gg~a~GF~g~lw~-~n~~~ii 332 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV--------------GGSAGGFWGGLWS-PNSNVII 332 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecc--------------cccccceeeEEEc-CCCCEEE
Confidence 34557889999966788888888888888744 4433222210 0001112344454 6778888
Q ss_pred EeCCCc---EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcC
Q 048181 111 ADAYSG---LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDA 159 (310)
Q Consensus 111 ad~~~g---i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~ 159 (310)
+....| +++ +.+...-+ ....-..++....|++-+| .|.++.|-+
T Consensus 333 ~~g~~Gg~hlWk-t~d~~~w~--~~~~iSGH~~~V~dv~W~p-sGeflLsvs 380 (764)
T KOG1063|consen 333 AHGRTGGFHLWK-TKDKTFWT--QEPVISGHVDGVKDVDWDP-SGEFLLSVS 380 (764)
T ss_pred EecccCcEEEEe-ccCcccee--eccccccccccceeeeecC-CCCEEEEec
Confidence 877655 444 22221111 1122223566788999999 498888754
No 334
>PRK10115 protease 2; Provisional
Probab=34.41 E-value=5.3e+02 Score=26.47 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=44.6
Q ss_pred ccCccceEEeCCCCe-EEEE-cCCCccCccceeEeeeecCCCceEEEEcCCCCeEE-EeecCCCCCceeEEccCCCEEEE
Q 048181 139 FHFLDGLDVDQGTGV-VYFT-DASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT-VLLRNLTGPAGVAISVDSSFLLV 215 (310)
Q Consensus 139 ~~~pndvavd~~~G~-lyvt-d~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~-~~~~~l~~pnGIa~~~dg~~Lyv 215 (310)
.....++.++|+ |+ |.++ |... ...-.|+.+|..+|+.. ..+++.. .+++|++|++.+|+
T Consensus 126 ~~~l~~~~~Spd-g~~la~~~d~~G--------------~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y 188 (686)
T PRK10115 126 FYTLGGMAITPD-NTIMALAEDFLS--------------RRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYY 188 (686)
T ss_pred cEEEeEEEECCC-CCEEEEEecCCC--------------cEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEE
Confidence 344567788884 55 3333 2221 11235778888777521 1122222 56999999998888
Q ss_pred Eec-----CCCeEEEEEecCC
Q 048181 216 SEF-----TGNRTLKYWLRGP 231 (310)
Q Consensus 216 ~d~-----~~~~I~~~~~~~~ 231 (310)
+-. ....|+++++..+
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEecCCCCCCCEEEEEECCCC
Confidence 743 3357888888643
No 335
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=34.32 E-value=3.6e+02 Score=24.53 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=25.6
Q ss_pred ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCC
Q 048181 23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD 64 (310)
Q Consensus 23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g 64 (310)
+-..+++|. ...--+++|..+|+..|.=-..+.|..-+..+
T Consensus 33 p~~~velp~-~s~~l~ia~~~~g~~gwlVg~rgtiletdd~g 73 (339)
T COG4447 33 PWTDVELPT-LSPTLDIAFTESGSHGWLVGGRGTILETDDGG 73 (339)
T ss_pred cceeeeccc-cCcccceeEeecCcceEEEcCcceEEEecCCc
Confidence 455677773 44556788888876455444466676666554
No 336
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=33.54 E-value=3.7e+02 Score=24.36 Aligned_cols=53 Identities=25% Similarity=0.244 Sum_probs=34.1
Q ss_pred CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181 177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
.+++++.++.+..+...-...+. -|..++++|++ +.++--...+|.+|.++.+
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~~~-~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~ 190 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQNLT-QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDE 190 (344)
T ss_pred cceeEEEEecCcccceeeccccc-eeeeEEcCCCc-eEEEecCCCcceEEEeCCc
Confidence 34666666654333222222232 58999999998 5666667889999998743
No 337
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=33.35 E-value=3.3e+02 Score=23.85 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=19.1
Q ss_pred cceEEEccCCCEEEEEeCCCeEEEEECCCc
Q 048181 36 GESIAFEPVGGAFYTGVADGRILKYQAPDG 65 (310)
Q Consensus 36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~ 65 (310)
...+++||.|+|+.++..+..-.-++-.|+
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGG 263 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence 345788899998877765554444444333
No 338
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=31.37 E-value=3.9e+02 Score=24.05 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=55.1
Q ss_pred CCeEEEEeCC------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181 105 TRQLYIADAY------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST 178 (310)
Q Consensus 105 ~g~LyVad~~------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~ 178 (310)
++.||+.-.. ..++++|+.+.+.+.........+...-+..++.- ++.||+.-.... ....
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~------------~~~~ 138 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRN------------GKPS 138 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCC------------CccC
Confidence 6789987432 23788888765431101111111111112223333 489998743210 0112
Q ss_pred ceEEEEcCCCCeEEEeecCC--CCCceeEEccCCCEEEEEecCC----CeEEEEEecC
Q 048181 179 GRLLSYNPRSSQVTVLLRNL--TGPAGVAISVDSSFLLVSEFTG----NRTLKYWLRG 230 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~~~l--~~pnGIa~~~dg~~Lyv~d~~~----~~I~~~~~~~ 230 (310)
..+++||+.+.+.+.+..-. ......+..-++ .|||.--.. ..+++|++..
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECC-EEEEEcCCCCccccceEEEecCC
Confidence 46999999877766543211 122223333344 588863221 2467888753
No 339
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.90 E-value=1.2e+02 Score=30.42 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=34.5
Q ss_pred ecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCC
Q 048181 21 IPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD 64 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g 64 (310)
-|.+-.+++|+. +--.+++|++||.++.++..+|+|.-.|...
T Consensus 51 ~qRlwtip~p~~-~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 51 WQRLWTIPIPGE-NVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceeEeccCCCC-ccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 456677888853 4447999999999999999999998888663
No 340
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=29.85 E-value=4.1e+02 Score=24.75 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCceEEEEcCCCCeEEEeec-CCCCCceeEEccC-CCEEEEEecCCCeEEEEEecC
Q 048181 177 STGRLLSYNPRSSQVTVLLR-NLTGPAGVAISVD-SSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 177 ~~G~l~~~d~~~g~~~~~~~-~l~~pnGIa~~~d-g~~Lyv~d~~~~~I~~~~~~~ 230 (310)
.+|.+-.||+.+++.-.-.. .-..-||+.|..+ +-+...+-+..+.|..+|+..
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs 103 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS 103 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec
Confidence 45778888887654321111 2224589999874 445667777888999998764
No 341
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=29.31 E-value=5e+02 Score=24.59 Aligned_cols=111 Identities=7% Similarity=0.083 Sum_probs=66.5
Q ss_pred EeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181 27 ILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT 105 (310)
Q Consensus 27 ~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~ 105 (310)
+.+.|...-.+.+.|.+.+ ..|+..-++.|.++|...+ ...-. .....-+.+.+. +.
T Consensus 254 vtl~GHt~~Vs~V~w~d~~-v~yS~SwDHTIk~WDletg~~~~~~--------------------~~~ksl~~i~~~-~~ 311 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDAT-VIYSVSWDHTIKVWDLETGGLKSTL--------------------TTNKSLNCISYS-PL 311 (423)
T ss_pred EEecccccceeeEEEcCCC-ceEeecccceEEEEEeecccceeee--------------------ecCcceeEeecc-cc
Confidence 3445555667789998754 4788888999999997732 21110 111122355664 45
Q ss_pred CeEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCC
Q 048181 106 RQLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDAS 160 (310)
Q Consensus 106 g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~ 160 (310)
-+|++|.... .|..+||.++.-..+...+-| +-++...+..+|.+-..+++-+.
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g-H~nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG-HKNWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred cceeeecCCCCceeecCCCCCCCceeEEeeec-chhhhhheecCCCCceEEEEEec
Confidence 6677765443 377789986543333333333 23467778888866667776554
No 342
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=28.74 E-value=1.8e+02 Score=22.34 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=36.9
Q ss_pred eeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECCCCcEEEEEecC-CCccccceeEEEecCCCC
Q 048181 247 NIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFE-AQYSTTPISEVQPFGGAL 310 (310)
Q Consensus 247 gl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p-~~~~~~~~t~~~~~~~~l 310 (310)
|+++ +|- +|.|..... ....+++||=..+.-+.+..| .......-...++++|+|
T Consensus 1 gici----nGvly~~a~~~~~-----~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L 57 (129)
T PF08268_consen 1 GICI----NGVLYWLAWSEDS-----DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKL 57 (129)
T ss_pred CEEE----CcEEEeEEEECCC-----CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeE
Confidence 4555 455 467776211 125799999999999999998 222345667777888875
No 343
>PF14977 FAM194: FAM194 protein
Probab=28.69 E-value=3.8e+02 Score=23.04 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred ceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEec
Q 048181 246 HNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISF 291 (310)
Q Consensus 246 dgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~ 291 (310)
.|.+-++ +|++|+..... .+..+|++|.++....=
T Consensus 69 ~g~~y~~--~g~~~l~l~~~---------gG~~~D~~G~~~k~W~W 103 (208)
T PF14977_consen 69 HGTCYHP--NGNIWLVLNQE---------GGQYFDQKGNRVKKWNW 103 (208)
T ss_pred CEEEEcC--CCCEEEEEECC---------CCEEEcCCCCEEEEEec
Confidence 3455666 66666666654 35556666666665433
No 344
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=28.57 E-value=1.3e+02 Score=27.05 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=36.6
Q ss_pred ccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE-EeecCCCCCceeEEccCCCEEEEEecCC
Q 048181 142 LDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT-VLLRNLTGPAGVAISVDSSFLLVSEFTG 220 (310)
Q Consensus 142 pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~-~~~~~l~~pnGIa~~~dg~~Lyv~d~~~ 220 (310)
.+++.|-+ ++.|+.|- ..+||+-.|.-++...- ++.-.-..-|.+||+||-. |..+-+..
T Consensus 254 v~gvrIRp-D~KIlATA-----------------GWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaaskD 314 (323)
T KOG0322|consen 254 VSGVRIRP-DGKILATA-----------------GWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKD 314 (323)
T ss_pred ccceEEcc-CCcEEeec-----------------ccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhccCC
Confidence 35666666 36665543 23344444443344322 2222224569999999965 67777777
Q ss_pred CeEEEE
Q 048181 221 NRTLKY 226 (310)
Q Consensus 221 ~~I~~~ 226 (310)
.||--.
T Consensus 315 ~rISLW 320 (323)
T KOG0322|consen 315 ARISLW 320 (323)
T ss_pred ceEEee
Confidence 776543
No 345
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=27.17 E-value=1.1e+02 Score=27.44 Aligned_cols=30 Identities=23% Similarity=0.098 Sum_probs=18.6
Q ss_pred CCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 200 GPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 200 ~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
.=.=++||||+. |++....++.|..|++.|
T Consensus 45 QWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 45 QWRKLAWSPDCT-LLAYAESTGTIRVFDLMG 74 (282)
T ss_pred hheEEEECCCCc-EEEEEcCCCeEEEEeccc
Confidence 335677777775 444444566777777654
No 346
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.96 E-value=6.9e+02 Score=25.47 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=55.6
Q ss_pred eEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEEeeccCCC--------ccccCccceEEeCCCCeEEEEcCCCccCccce
Q 048181 98 GLALHYATRQLYIADA-YSGLLVVGPNGRLATQLATGAEG--------QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTI 168 (310)
Q Consensus 98 Gla~d~~~g~LyVad~-~~gi~~id~~~~~~~~~~~~~~g--------~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~ 168 (310)
-|++-+++..++++-+ .+.|+..|..++..+.++. .+. .+-...-.+|..+ +|.++++.
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsG---------- 189 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS-FNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSG---------- 189 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhh-ccccccccCCCCCccceeeeecCC-cceEEEec----------
Confidence 4565324555544322 2348888887664322211 111 1111222344444 35555543
Q ss_pred eEeeeecCCCceEEEEcCCCCeEEE-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 169 VKLNITNDSTGRLLSYNPRSSQVTV-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 169 ~~~~~~~~~~G~l~~~d~~~g~~~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
..++-|-.+|+.+++-.. +...-..-.-+.+++||..+ ++-+..+.|...++.
T Consensus 190 -------gtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~-ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 190 -------GTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRL-LSASSDGTIRLWDLG 243 (735)
T ss_pred -------CcccceEEeccccccceeeeeccccceEEEEEcCCCCeE-eecCCCceEEeeecc
Confidence 234556667877654322 22223344577888888765 455556666655553
No 347
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.29 E-value=5.7e+02 Score=24.28 Aligned_cols=72 Identities=24% Similarity=0.286 Sum_probs=41.1
Q ss_pred ccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeec--CCCCCceeEEccCCCEEEEE
Q 048181 139 FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR--NLTGPAGVAISVDSSFLLVS 216 (310)
Q Consensus 139 ~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~--~l~~pnGIa~~~dg~~Lyv~ 216 (310)
++...-++|+. +|++..--+ -+|.|..|+..+-+.-.... ....-.+++|+||.+.+ .+
T Consensus 281 ~~siSsl~VS~-dGkf~AlGT-----------------~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~-~s 341 (398)
T KOG0771|consen 281 FKSISSLAVSD-DGKFLALGT-----------------MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL-AS 341 (398)
T ss_pred cCcceeEEEcC-CCcEEEEec-----------------cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc-cc
Confidence 45567899998 488764332 24667777654333222221 22356899999998743 34
Q ss_pred ecCCCeEEEEEec
Q 048181 217 EFTGNRTLKYWLR 229 (310)
Q Consensus 217 d~~~~~I~~~~~~ 229 (310)
-+..++...+.+.
T Consensus 342 vSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 342 VSSDNEAAVTKLA 354 (398)
T ss_pred cccCCceeEEEEe
Confidence 4445554444443
No 348
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=26.17 E-value=3.5e+02 Score=27.48 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=20.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEE
Q 048181 105 TRQLYIADAYSGLLVVGPNGRLAT 128 (310)
Q Consensus 105 ~g~LyVad~~~gi~~id~~~~~~~ 128 (310)
++.||||-.++.++.+|.++|+..
T Consensus 214 gdtlYvcTphn~v~ALDa~TGkek 237 (773)
T COG4993 214 GDTLYVCTPHNRVFALDAATGKEK 237 (773)
T ss_pred CCEEEEecCcceeEEeeccCCcee
Confidence 688999988888999999987653
No 349
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=26.03 E-value=5.2e+02 Score=23.70 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=46.2
Q ss_pred CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCCeEEEEeC
Q 048181 35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATRQLYIADA 113 (310)
Q Consensus 35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~LyVad~ 113 (310)
+-.++-+++.++.+.++.=+|.++-++-+....... -....| +..++. +...+|+.+.
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~-d~~~~~~G~~ 73 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFA-DESTIVTGGL 73 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeecc-CCceEEEecc
Confidence 445677887765566666677777776553211100 011233 245663 5678888777
Q ss_pred CCcEEEEeCCCCeEEEee
Q 048181 114 YSGLLVVGPNGRLATQLA 131 (310)
Q Consensus 114 ~~gi~~id~~~~~~~~~~ 131 (310)
...|.++|..++....+.
T Consensus 74 dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred CceEEEEEecCCcceeec
Confidence 767999999987665553
No 350
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=25.63 E-value=5.5e+02 Score=23.93 Aligned_cols=89 Identities=17% Similarity=0.111 Sum_probs=57.1
Q ss_pred CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC-CCCceeeeCCCCCCcEEEEEecCCCCC---------
Q 048181 200 GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ-AKPHNIKRNPGLLQTFWEAAIITRQPA--------- 269 (310)
Q Consensus 200 ~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~-g~Pdgl~~d~~~dG~l~va~~~~~~~~--------- 269 (310)
.-..+.+||||++|+.+....-||.+..+... ++.. ..-| ...-|+++.+ ||.+- |.-..|.=+
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~~~~--~~~pK~~~kg~~f~~--dg~f~-ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-KGYL--LPHPKTNVKGYAFHP--DGQFC-AILSRRDCKDYVQISSCK 166 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccc-eeEE--ecccccCceeEEECC--CCcee-eeeecccHHHHHHHHhhH
Confidence 33568899999999998888888888877642 2211 1111 1236899999 98653 333323211
Q ss_pred ----------CCCceeeEEECCCCcEEEEEecCCC
Q 048181 270 ----------GTPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 270 ----------~~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
++.--..+..+|||..+.+.+.+=.
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEEecchhh
Confidence 0122346889999999988887643
No 351
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=89 Score=30.15 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=37.3
Q ss_pred ceEEEEcCCCCeEEEee--cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181 179 GRLLSYNPRSSQVTVLL--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG 230 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~ 230 (310)
-++.++++.+....... +.+..|-||..|.||- .|++|...+++.+.++.+
T Consensus 445 ~~ilvi~~~n~~~l~~~g~~~fylphgl~~dkdgf-~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 445 DTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGF-YWVTDVASHQVFKLKPNN 497 (501)
T ss_pred ceEEEEcCcchhhhhhccCCceecCCcceecCCCc-EEeecccchhhhhccccc
Confidence 46778877532221211 3567899999999995 899999999999887764
No 352
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=24.84 E-value=1.2e+02 Score=28.05 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=28.4
Q ss_pred CceEEEEcCCC-CeEEEeec------CCCCCceeEEccCC--CEEEEEecCCCeEEEEEecCC
Q 048181 178 TGRLLSYNPRS-SQVTVLLR------NLTGPAGVAISVDS--SFLLVSEFTGNRTLKYWLRGP 231 (310)
Q Consensus 178 ~G~l~~~d~~~-g~~~~~~~------~l~~pnGIa~~~dg--~~Lyv~d~~~~~I~~~~~~~~ 231 (310)
...||.+|.++ |.+...++ ++..|..+..+.|| .++|+.|. .+.|||+++.+.
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~~ 241 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSSA 241 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEET-TSEEEEEE--TT
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcC-CCcEEEEECCCC
Confidence 45788899887 76543322 12223222233444 37888886 689999999864
No 353
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=24.74 E-value=7.2e+02 Score=25.88 Aligned_cols=98 Identities=19% Similarity=0.305 Sum_probs=56.1
Q ss_pred hhhhcCCceeeeecceEE--E-eCCCCCCCcceEEEc----cCC--CEEEEEeCCCeEEEEECCCc---eEE-eeeecCC
Q 048181 9 VFVFSLPRMVFSIPTFTK--I-LFPPKAFGGESIAFE----PVG--GAFYTGVADGRILKYQAPDG---FTD-FAFTTPT 75 (310)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~Pegia~d----~~G--~l~~~d~~~g~I~r~~~~g~---~~~-~~~~~~~ 75 (310)
=|+=.-|+|-.+.+++.. + -..+ -..-.-|++| .++ .++|++...|+|+|+-.-++ ... +.-
T Consensus 381 ~Fik~HpLM~~~V~p~~~~P~l~~~~-~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llE---- 455 (737)
T KOG3611|consen 381 NFIKTHPLMDEAVPPVHGRPLLVKTG-DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLE---- 455 (737)
T ss_pred hhhhhCcccccccCCCCCCceEEecc-cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEE----
Confidence 345566788888777732 1 1111 1234457777 344 47899999999999754332 111 110
Q ss_pred CCccccCCCccccCCCCCCce-eeEEEecCCCeEEEEeCCCcEEEEeCC
Q 048181 76 RSKAVCDGTTNLDLGPICRRT-FGLALHYATRQLYIADAYSGLLVVGPN 123 (310)
Q Consensus 76 ~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~LyVad~~~gi~~id~~ 123 (310)
....-+.. .| ..|.++.+.+.|||+.. .+|+++...
T Consensus 456 ----------Elqvf~~~-~pI~~m~Ls~~~~~LyVgs~-~gV~qvpl~ 492 (737)
T KOG3611|consen 456 ----------ELQVFPDA-EPIRSMQLSSKRGSLYVGSR-SGVVQVPLA 492 (737)
T ss_pred ----------EEeecCCC-CceeEEEecccCCeEEEEcc-CcEEEeehh
Confidence 00011111 33 47888877888999853 468888754
No 354
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=24.10 E-value=5e+02 Score=22.83 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=51.1
Q ss_pred CcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181 35 GGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA 113 (310)
Q Consensus 35 ~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~ 113 (310)
.--||.+.|. |.||=+ ...++||.+++..+..+....+. . .....+.+.|+.|++.-+||-|...
T Consensus 28 ~l~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~vg~s~------------~-~~al~g~~~gvDFNP~aDRlRvvs~ 93 (236)
T PF14339_consen 28 SLVGIDFRPANGQLYGL-GSTGRLYTINPATGAATPVGASP------------L-TVALSGTAFGVDFNPAADRLRVVSN 93 (236)
T ss_pred eEEEEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEeeccc------------c-cccccCceEEEecCcccCcEEEEcc
Confidence 4557888875 676655 45899999999866432221000 0 0122234678888877788988755
Q ss_pred CCcEEEEeCCCCeE
Q 048181 114 YSGLLVVGPNGRLA 127 (310)
Q Consensus 114 ~~gi~~id~~~~~~ 127 (310)
...-+|+++++|.+
T Consensus 94 ~GqNlR~npdtGav 107 (236)
T PF14339_consen 94 TGQNLRLNPDTGAV 107 (236)
T ss_pred CCcEEEECCCCCCc
Confidence 55588999998763
No 355
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=24.03 E-value=3.8e+02 Score=25.65 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=46.9
Q ss_pred CccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC--eEEEeecC-CCCCceeEEccCCCEEEEEe
Q 048181 141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS--QVTVLLRN-LTGPAGVAISVDSSFLLVSE 217 (310)
Q Consensus 141 ~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g--~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d 217 (310)
..||++..+....+|-+-. .+++|..+|..++ +....... -.--|.++|+|-+..|+.+-
T Consensus 229 ~VeDV~~h~~h~~lF~sv~-----------------dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~ 291 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVG-----------------DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG 291 (422)
T ss_pred ceehhhccccchhhheeec-----------------CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec
Confidence 3567777765455554322 3467877876632 22211111 22348999999888899998
Q ss_pred cCCCeEEEEEecC
Q 048181 218 FTGNRTLKYWLRG 230 (310)
Q Consensus 218 ~~~~~I~~~~~~~ 230 (310)
+..++|.-+|+..
T Consensus 292 S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 292 SADKTVALWDLRN 304 (422)
T ss_pred cCCCcEEEeechh
Confidence 8899999998753
No 356
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.90 E-value=4.3e+02 Score=25.11 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=15.8
Q ss_pred CCccccCccceEEeCCCCeEE-EEcC
Q 048181 135 EGQAFHFLDGLDVDQGTGVVY-FTDA 159 (310)
Q Consensus 135 ~g~~~~~pndvavd~~~G~ly-vtd~ 159 (310)
.+.++....|+..+++++..| ++|.
T Consensus 64 ~~~p~~G~Sgi~~d~~~~~f~~lSDn 89 (391)
T COG4222 64 NGQPVGGFSGITYDPQGDGYWALSDN 89 (391)
T ss_pred CCCCCCceeeeEEccCCCeEEEEeCC
Confidence 344555678999999633455 3554
No 357
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=23.72 E-value=5.5e+02 Score=23.26 Aligned_cols=49 Identities=27% Similarity=0.250 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCeEEEeecCCCC-C-ceeEE-ccCCCEEEEEec------CCCeEEEEEec
Q 048181 179 GRLLSYNPRSSQVTVLLRNLTG-P-AGVAI-SVDSSFLLVSEF------TGNRTLKYWLR 229 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~~~l~~-p-nGIa~-~~dg~~Lyv~d~------~~~~I~~~~~~ 229 (310)
..+.+||+.+.+-+.+. .+.. + .+.++ .-++ .|||.-- ....++.|+++
T Consensus 168 ~~v~~YDp~t~~W~~~~-~~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~ 225 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG-ENPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFT 225 (346)
T ss_pred ceEEEEECCCCceeECc-cCCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEec
Confidence 46999999888776653 2322 2 22222 2344 5888532 12346667664
No 358
>PRK13614 lipoprotein LpqB; Provisional
Probab=23.63 E-value=5.4e+02 Score=25.86 Aligned_cols=56 Identities=14% Similarity=-0.002 Sum_probs=28.3
Q ss_pred CceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181 201 PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQAKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 201 pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
+...++++||+.+-+......+++.....+ ....+ ..|. .-.+|. +|.+|.+..+.
T Consensus 345 ~~s~avS~~g~~~A~~~~~~~~l~~~~~g~---~~~~~~~g~~Lt----~PS~d~--~g~vWtv~~g~ 403 (573)
T PRK13614 345 PASPAESPVSQTVAFLNGSRTTLYTVSPGQ---PARALTSGSTLT----RPSFSP--QDWVWTAGPGG 403 (573)
T ss_pred ccceeecCCCceEEEecCCCcEEEEecCCC---cceeeecCCCcc----CCcccC--CCCEEEeeCCC
Confidence 446789999985444433233555544321 11111 1221 234666 77777776544
No 359
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=23.38 E-value=5.2e+02 Score=24.67 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=48.1
Q ss_pred CceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeec---CCCCCceeeeCCCC
Q 048181 178 TGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIIN---FQAKPHNIKRNPGL 254 (310)
Q Consensus 178 ~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~---l~g~Pdgl~~d~~~ 254 (310)
+..+..++-.+|+.-.-++.-..-..+.|+.||+ ++++-....+|+.++.. .++..-.. ....|-...+-.
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr---~~~~v~e~~~heG~k~~Raifl~-- 226 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPR---RGTVVSEGVAHEGAKPARAIFLA-- 226 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCC---CCcEeeecccccCCCcceeEEec--
Confidence 3456777776776544333222335889999997 77888888889988864 23332111 112344444445
Q ss_pred CCcEEEEEecC
Q 048181 255 LQTFWEAAIIT 265 (310)
Q Consensus 255 dG~l~va~~~~ 265 (310)
+|.+..+....
T Consensus 227 ~g~i~tTGfsr 237 (472)
T KOG0303|consen 227 SGKIFTTGFSR 237 (472)
T ss_pred cCceeeecccc
Confidence 67766655443
No 360
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=22.24 E-value=6.9e+02 Score=23.84 Aligned_cols=147 Identities=7% Similarity=0.033 Sum_probs=68.1
Q ss_pred eeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181 97 FGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND 176 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~ 176 (310)
..|+++..+..||-......|++-|.++.+.-.++..-+.. ...-++.++|. .+++++-+.
T Consensus 109 F~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~--~~VY~m~~~P~-DN~~~~~t~---------------- 169 (609)
T KOG4227|consen 109 FSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNR--GDVYHMDQHPT-DNTLIVVTR---------------- 169 (609)
T ss_pred EEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcc--cceeecccCCC-CceEEEEec----------------
Confidence 36777633333442222234777777765433332221111 11235666663 555544332
Q ss_pred CCceEEEEcCCCC----eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCCCCC---c
Q 048181 177 STGRLLSYNPRSS----QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQAKP---H 246 (310)
Q Consensus 177 ~~G~l~~~d~~~g----~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~g~P---d 246 (310)
.|+|..+|.... .+-..+..-..-..+.|.|..-.|+.+...++-+-.++..-+....... .+|+.-. .
T Consensus 170 -~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 170 -AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWM 248 (609)
T ss_pred -CceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhh
Confidence 355666654321 1111111111224566777776677766666655555554321111111 2233211 3
Q ss_pred eeeeCCCCCCcEEEEEecC
Q 048181 247 NIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 247 gl~~d~~~dG~l~va~~~~ 265 (310)
+..+.+ .|+-+.+..-.
T Consensus 249 ~~~~~~--~G~Q~msiRR~ 265 (609)
T KOG4227|consen 249 GSLWSP--SGNQFMSIRRG 265 (609)
T ss_pred heeeCC--CCCeehhhhcc
Confidence 567777 78777765543
No 361
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=22.17 E-value=2.5e+02 Score=26.20 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCC-----CCceeeeCCCCCCcEEEEEecCCCCCC---------CC
Q 048181 209 DSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQA-----KPHNIKRNPGLLQTFWEAAIITRQPAG---------TP 272 (310)
Q Consensus 209 dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g-----~Pdgl~~d~~~dG~l~va~~~~~~~~~---------~~ 272 (310)
||++++|..-......-++++.-+.|.... ..+.| +|-+|.--. +|++|+|.-.+....| +.
T Consensus 142 DGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~--nGH~Y~asLSG~~~SPLKiY~w~tPts 219 (442)
T PF15416_consen 142 DGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALV--NGHSYLASLSGGKASPLKIYYWETPTS 219 (442)
T ss_pred CCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhc--CCeEEEEeccCCCCCceEEEEecCCCC
Q ss_pred ceeeEE
Q 048181 273 VPIGQR 278 (310)
Q Consensus 273 ~~~v~~ 278 (310)
.|.|+.
T Consensus 220 ~PevIa 225 (442)
T PF15416_consen 220 APEVIA 225 (442)
T ss_pred CceEEE
No 362
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=22.08 E-value=2.6e+02 Score=25.14 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=25.5
Q ss_pred CCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181 200 GPAGVAISVDSSFLLVSEFTGNRTLKYWLR 229 (310)
Q Consensus 200 ~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~ 229 (310)
.-+|+.+-||++ ++.+.-..+||++|...
T Consensus 253 Gv~gvrIRpD~K-IlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 253 GVSGVRIRPDGK-ILATAGWDHRIRVYSWR 281 (323)
T ss_pred CccceEEccCCc-EEeecccCCcEEEEEec
Confidence 458999999998 88888899999999875
No 363
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=22.08 E-value=7.9e+02 Score=24.44 Aligned_cols=108 Identities=10% Similarity=0.153 Sum_probs=59.6
Q ss_pred eeEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEE-EcCCCccCccceeEee
Q 048181 97 FGLALHYATRQLYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYF-TDASGVYDFRTIVKLN 172 (310)
Q Consensus 97 ~Gla~d~~~g~LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyv-td~~~~~~~~~~~~~~ 172 (310)
+.+.+. .+++=|.+-++ ..+-.+|+++.-+- .-.+|.. |.+-+.|. |++.+ +.-++
T Consensus 274 hdv~W~-~s~~EF~VvyGfMPAkvtifnlr~~~v~---df~egpR----N~~~fnp~-g~ii~lAGFGN----------- 333 (566)
T KOG2315|consen 274 HDVTWS-PSGREFAVVYGFMPAKVTIFNLRGKPVF---DFPEGPR----NTAFFNPH-GNIILLAGFGN----------- 333 (566)
T ss_pred eEEEEC-CCCCEEEEEEecccceEEEEcCCCCEeE---eCCCCCc----cceEECCC-CCEEEEeecCC-----------
Confidence 567775 56654443222 23667777754322 2223322 77888884 76654 33222
Q ss_pred eecCCCceEEEEcCCCCeEEEeecCCC--CCceeEEccCCCEEEEEecCC-----CeEEEEEecCC
Q 048181 173 ITNDSTGRLLSYNPRSSQVTVLLRNLT--GPAGVAISVDSSFLLVSEFTG-----NRTLKYWLRGP 231 (310)
Q Consensus 173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~--~pnGIa~~~dg~~Lyv~d~~~-----~~I~~~~~~~~ 231 (310)
-.|.+-.+|-.+.+ .+..+. ...=..|+|||.+++.+-+.. +.+..|+++|.
T Consensus 334 ----L~G~mEvwDv~n~K---~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 334 ----LPGDMEVWDVPNRK---LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ----CCCceEEEeccchh---hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 24777777765422 222333 334577899999888877652 23444555554
No 364
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=22.04 E-value=5.8e+02 Score=22.90 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=41.6
Q ss_pred CCeEEEEeCC------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181 105 TRQLYIADAY------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST 178 (310)
Q Consensus 105 ~g~LyVad~~------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~ 178 (310)
+++|||.-.. +.++++|+++.+-+.+.. ....+ .....++.- ++.||+-..... ...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~~--r~~~~~~~~-~~~iYv~GG~~~-------------~~~ 185 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-FPGEP--RVQPVCVKL-QNELYVFGGGSN-------------IAY 185 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-CCCCC--CCcceEEEE-CCEEEEEcCCCC-------------ccc
Confidence 7899997432 248899998876555432 22111 112233333 489998753210 001
Q ss_pred ceEEEEcCCCCeEEEee
Q 048181 179 GRLLSYNPRSSQVTVLL 195 (310)
Q Consensus 179 G~l~~~d~~~g~~~~~~ 195 (310)
..+++||+.+.+.+.+.
T Consensus 186 ~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 186 TDGYKYSPKKNQWQKVA 202 (323)
T ss_pred cceEEEecCCCeeEECC
Confidence 23678999877766544
No 365
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=21.85 E-value=1.6e+02 Score=29.00 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=33.9
Q ss_pred CccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE-eecCCCCCceeEEccCCCEEEEEecC
Q 048181 141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV-LLRNLTGPAGVAISVDSSFLLVSEFT 219 (310)
Q Consensus 141 ~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~ 219 (310)
.+|..++++ +|....+-+ .+|.|-.||=++.++.- +..-+..--.++|||||++| |+--.
T Consensus 292 ~in~f~FS~-DG~~LA~VS-----------------qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI-vtGGE 352 (636)
T KOG2394|consen 292 SINEFAFSP-DGKYLATVS-----------------QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI-VTGGE 352 (636)
T ss_pred cccceeEcC-CCceEEEEe-----------------cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE-EecCC
Confidence 467777777 466554433 23544444433332211 11223344679999999944 43333
Q ss_pred CCeEEEEE
Q 048181 220 GNRTLKYW 227 (310)
Q Consensus 220 ~~~I~~~~ 227 (310)
..-|.+|.
T Consensus 353 DDLVtVwS 360 (636)
T KOG2394|consen 353 DDLVTVWS 360 (636)
T ss_pred cceEEEEE
Confidence 33333333
No 366
>PLN02193 nitrile-specifier protein
Probab=21.68 E-value=7.3e+02 Score=23.92 Aligned_cols=111 Identities=16% Similarity=0.083 Sum_probs=58.4
Q ss_pred CCCeEEEEeCC------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCC
Q 048181 104 ATRQLYIADAY------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDS 177 (310)
Q Consensus 104 ~~g~LyVad~~------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~ 177 (310)
-+++|||.-.. +.++++|+.+.+-+.+......+.-..-..+++. ++.||+--.... ...
T Consensus 227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~------------~~~ 292 (470)
T PLN02193 227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSA------------TAR 292 (470)
T ss_pred ECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCC------------CCC
Confidence 37889987432 2489999998766554322111111112234444 488998653221 001
Q ss_pred CceEEEEcCCCCeEEEeecC--CCCC---ceeEEccCCCEEEEEecC----CCeEEEEEecC
Q 048181 178 TGRLLSYNPRSSQVTVLLRN--LTGP---AGVAISVDSSFLLVSEFT----GNRTLKYWLRG 230 (310)
Q Consensus 178 ~G~l~~~d~~~g~~~~~~~~--l~~p---nGIa~~~dg~~Lyv~d~~----~~~I~~~~~~~ 230 (310)
...+++||+.+.+.+.+... ...+ -+++. -+++ +|+.--. .+.+++|++..
T Consensus 293 ~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gk-iyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 293 LKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGK-VWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred cceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCc-EEEEECCCCCccCceEEEECCC
Confidence 23578899887766544321 1111 12333 2454 7765321 25688998763
No 367
>PRK13615 lipoprotein LpqB; Provisional
Probab=21.41 E-value=8.3e+02 Score=24.45 Aligned_cols=55 Identities=7% Similarity=-0.052 Sum_probs=28.5
Q ss_pred CceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181 201 PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQAKPHNIKRNPGLLQTFWEAAIIT 265 (310)
Q Consensus 201 pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~g~Pdgl~~d~~~dG~l~va~~~~ 265 (310)
+..+++++||+.+-+.+. ...++.-...+ ....+ ..|. .-.+|. +|.+|.+..+.
T Consensus 336 ~~s~avS~dg~~~A~v~~-~~~l~vg~~~~---~~~~~~~~~~Lt----~PS~d~--~g~vWtv~~g~ 393 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA-SGVWSVGDGDR---DAVLLDTRPGLV----APSLDA--QGYVWSTPASD 393 (557)
T ss_pred cccceEcCCCceEEEEcC-CceEEEecCCC---cceeeccCCccc----cCcCcC--CCCEEEEeCCC
Confidence 345799999986555543 33333222211 11111 1122 234677 88888877654
No 368
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=20.64 E-value=3.2e+02 Score=24.96 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=38.2
Q ss_pred CCceeEE-ccCCC-EEEEEecCC-CeEEEEEecCCCCC-ceee-ecCC---CCCceeeeCCCCCCcEEEEEe-cCCCCCC
Q 048181 200 GPAGVAI-SVDSS-FLLVSEFTG-NRTLKYWLRGPRAN-SFDI-INFQ---AKPHNIKRNPGLLQTFWEAAI-ITRQPAG 270 (310)
Q Consensus 200 ~pnGIa~-~~dg~-~Lyv~d~~~-~~I~~~~~~~~~~g-~~~~-~~l~---g~Pdgl~~d~~~dG~l~va~~-~~~~~~~ 270 (310)
.+.++.. +.+|+ +|++-+... +.|..|+++..+.- ...+ ...| +.+.++.... | .+|+... ..
T Consensus 43 ~~~~l~~~~~~~~~yL~f~n~~~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~--D-si~l~~~~~~----- 114 (333)
T PF13970_consen 43 LSYYLQSFSSDGKKYLYFLNNYKSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNL--D-SIFLFNSYAF----- 114 (333)
T ss_dssp --SSEEEEEETTEEEEEEEE-ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESS--S-TTSEEEEGGG-----
T ss_pred ccccEEEEEcCCcEEEEEEcCCCcceEEEEECCCCceeeeeeeeeECCCCccccccceEcC--C-ceEEEecCCc-----
Confidence 3445542 34444 555666665 89999998642110 1111 1111 2234455333 3 4444443 22
Q ss_pred CCceeeEEECCCCcEEEEEecCCC
Q 048181 271 TPVPIGQRISAFGAVLDTISFEAQ 294 (310)
Q Consensus 271 ~~~~~v~~~~~~G~~~~~~~~p~~ 294 (310)
..+..+|.+|+++..+.+...
T Consensus 115 ---~~l~~~n~~G~~~~~~~~~~~ 135 (333)
T PF13970_consen 115 ---PKLFLFNSQGEVLKKIDLEEE 135 (333)
T ss_dssp ---TEEEEE-TT--EEEEEE---T
T ss_pred ---ceEEEEcCCCeEEEEEecccC
Confidence 379999999999999999753
No 369
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.06 E-value=7e+02 Score=23.09 Aligned_cols=134 Identities=14% Similarity=0.091 Sum_probs=70.9
Q ss_pred ccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC
Q 048181 142 LDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN 221 (310)
Q Consensus 142 pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~ 221 (310)
.+.....| +.+|.+|.+... .-+||-|.+.=..+.++...-.--....|..|.+ .|+-+...
T Consensus 317 LtHcstHp-tQrLVvTsSrDt---------------TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDr 378 (481)
T KOG0300|consen 317 LTHCSTHP-TQRLVVTSSRDT---------------TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDR 378 (481)
T ss_pred ccccccCC-cceEEEEeccCc---------------eeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCc
Confidence 45667788 588988876431 1133333322122222222222335567777765 56666666
Q ss_pred eEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCc-cccce
Q 048181 222 RTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQY-STTPI 300 (310)
Q Consensus 222 ~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~-~~~~~ 300 (310)
.|..+++..-...... .........+++.. .+.+..--+.+| .|..||-+|..+.++.-.... +--+|
T Consensus 379 TvKvWdLrNMRsplAT-IRtdS~~NRvavs~--g~~iIAiPhDNR--------qvRlfDlnG~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLAT-IRTDSPANRVAVSK--GHPIIAIPHDNR--------QVRLFDLNGNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred eEEEeeeccccCccee-eecCCccceeEeec--CCceEEeccCCc--------eEEEEecCCCccccCCcccccccceee
Confidence 6776766421111111 22222356788886 333444445555 688899999988776632221 33456
Q ss_pred eEEE
Q 048181 301 SEVQ 304 (310)
Q Consensus 301 t~~~ 304 (310)
|.++
T Consensus 448 ~c~A 451 (481)
T KOG0300|consen 448 TCCA 451 (481)
T ss_pred eeee
Confidence 6554
Done!