BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048190
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/314 (63%), Positives = 237/314 (75%), Gaps = 5/314 (1%)
Query: 26 IGVCYGRVANNLPSDQEVVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVANGDIQ 85
+GVCYG NNLP EV+ LY + IT+MRIYDPN+ L+ALRGSNIEL+LGV N D+Q
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 86 ALSDPSAASSWVQNNILAFTPDVVFRYIAVGNEISPSDQA----ASFVLPAMQNIYNAIV 141
+L++PS A SWVQ N+ F V FRYIAVGNEISP ++ A FVLPAM+NI++AI
Sbjct: 62 SLTNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIR 121
Query: 142 SANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYF 201
SA LQDQIKVSTAI +L+GNSYPPSAG+F DD SY+ PI++FL +PLLAN+YPYF
Sbjct: 122 SAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPYF 181
Query: 202 SYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSET 261
+Y G+ +DI L YALFTS V DG GY+NLFDA+LDALYSALE+A LEVVVSE+
Sbjct: 182 TYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSES 241
Query: 262 GWPSEGGEAATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHF 321
GWPS G AAT DN TY N+I HV GTPKRP + IETYLFAMFDEN+K P E E+HF
Sbjct: 242 GWPSAGAFAATFDNGRTYLSNLIQHVKRGTPKRPKRAIETYLFAMFDENKKQP-EVEKHF 300
Query: 322 GLFSPNKQSKYELD 335
GLF PNK KY L+
Sbjct: 301 GLFFPNKWQKYNLN 314
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/317 (56%), Positives = 235/317 (74%), Gaps = 9/317 (2%)
Query: 24 RPIGVCYGRVANNLPSDQEVVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVANGD 83
+PIGVCYG++ANNLPSDQ+V+ LY+AN I KMRIY P+ AL+GSNIE++L V N D
Sbjct: 1 QPIGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQD 60
Query: 84 IQALSDPSAASSWVQNNILAFTPDVVFRYIAVGNEISP---SDQAASFVLPAMQNIYNAI 140
++AL++PS A+ WVQ+NI PDV F+YIAVGNE+ P S + A FV PAM+NIYNA+
Sbjct: 61 LEALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNAL 120
Query: 141 VSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPY 200
SA LQ+QIKVST+ + LL N+YPP F ++ S+I PI+ FL + PLLAN+YPY
Sbjct: 121 SSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPY 180
Query: 201 FSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSE 260
F +I +T + L YALF Q + GYQNLFDA +D++Y A EK G ++E++VSE
Sbjct: 181 FGHIDNTNAVPLSYALFNQQ----RRNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSE 236
Query: 261 TGWPSEGGEAATVDNASTYYKNVINHVS--AGTPKRPGKVIETYLFAMFDENQKGPAETE 318
+GWPSEG AAT+ NA TYY N+INHV AGTPK+PGK IETYLFAMFDEN+K +E
Sbjct: 237 SGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASE 296
Query: 319 RHFGLFSPNKQSKYELD 335
+HFGLF+P+++ KY+L+
Sbjct: 297 KHFGLFNPDQRPKYQLN 313
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/312 (58%), Positives = 231/312 (74%), Gaps = 3/312 (0%)
Query: 26 IGVCYGRVANNLPSDQEVVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVANGDIQ 85
IGVCYG + NNLP EVV LY +N I +MR+YDPN+ LQALR SNI+++L V D+Q
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 86 AL-SDPSAASSWVQNNILAFTPDVVFRYIAVGNEISPSDQAASFVLPAMQNIYNAIVSAN 144
+L S+PSAA W++ N++A+ P V FRYIAVGNE+ P A ++LPAM+NIYNA+ SA
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAG 120
Query: 145 LQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFSYI 204
LQ+QIKVSTA+ T +LG SYPPSAG+F+ A +Y+ PIVQFL GAPLL NVYPYFSY
Sbjct: 121 LQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYT 180
Query: 205 GDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSETGWP 264
G+ I L YALFT+ G VQDG YQNLFDA +DA+++ALE+ G ++ VVVSE+GWP
Sbjct: 181 GNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGWP 240
Query: 265 SEGGEA-ATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFGL 323
S GG A A+ NA TY +N+I HV GTP+RPGK IE Y+F MF+ENQK E++FGL
Sbjct: 241 SAGGGAEASTSNAQTYNQNLIRHVGGGTPRRPGKEIEAYIFEMFNENQKA-GGIEQNFGL 299
Query: 324 FSPNKQSKYELD 335
F PNKQ Y++
Sbjct: 300 FYPNKQPVYQIS 311
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/317 (56%), Positives = 234/317 (73%), Gaps = 9/317 (2%)
Query: 24 RPIGVCYGRVANNLPSDQEVVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVANGD 83
+PIGVCYG++ANNLPSDQ+V+ LY+AN I KMRIY P+ AL+GSNIE++L V N D
Sbjct: 1 QPIGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQD 60
Query: 84 IQALSDPSAASSWVQNNILAFTPDVVFRYIAVGNEISP---SDQAASFVLPAMQNIYNAI 140
++AL++PS A+ WVQ+NI PDV F+YIAVGNE+ P S + A FV PAM+NIYNA+
Sbjct: 61 LEALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNAL 120
Query: 141 VSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPY 200
SA LQ+QIKVST+ + LL N+YPP F ++ S+I PI+ FL + PLLAN+YPY
Sbjct: 121 SSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPY 180
Query: 201 FSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSE 260
F +I +T + L YALF Q + GYQNLFDA +D++Y A EK G ++E++VS
Sbjct: 181 FGHIDNTNAVPLSYALFNQQ----RRNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSA 236
Query: 261 TGWPSEGGEAATVDNASTYYKNVINHVS--AGTPKRPGKVIETYLFAMFDENQKGPAETE 318
+GWPSEG AAT+ NA TYY N+INHV AGTPK+PGK IETYLFAMFDEN+K +E
Sbjct: 237 SGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASE 296
Query: 319 RHFGLFSPNKQSKYELD 335
+HFGLF+P+++ KY+L+
Sbjct: 297 KHFGLFNPDQRPKYQLN 313
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 293 bits (751), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 219/311 (70%), Gaps = 7/311 (2%)
Query: 26 IGVCYGRVANNLPSDQEVVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVANGDIQ 85
IGVCYG ANNLP+ VV ++ +NGI MR+Y PN+ LQA+ G+ I +++G N +
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 86 ALSDPSAASS-WVQNNILAFTPDVVFRYIAVGNEISPSDQAASFVLPAMQNIYNAIVSAN 144
L+ AA++ WV++NI A+ P V FRY+ VGNE++ A ++PAM+N++ A+V+A
Sbjct: 61 NLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVA--GGATRNLVPAMKNVHGALVAAG 117
Query: 145 LQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFSYI 204
L IKV+T++ ++LG PPSAGSF +A +++GP+VQFL +T APL+AN+YPY ++
Sbjct: 118 L-GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWA 176
Query: 205 GDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSETGWP 264
+ + + YALF + GT V+DG+ GYQNLFD ++DA Y+A+ K G +++VVSE+GWP
Sbjct: 177 YNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWP 236
Query: 265 SEGGEAATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFGLF 324
S GG AAT NA Y +++INHV GTP+ PG IETY+FAMF+ENQK + E+++GLF
Sbjct: 237 SGGGTAATPANARFYNQHLINHVGRGTPRHPG-AIETYIFAMFNENQK-DSGVEQNWGLF 294
Query: 325 SPNKQSKYELD 335
PN Q Y ++
Sbjct: 295 YPNMQHVYPIN 305
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/312 (50%), Positives = 206/312 (66%), Gaps = 11/312 (3%)
Query: 26 IGVCYGRVANNLPSDQEVVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVANGDIQ 85
IGVCYG + NNLPS +VV LY + GI MRIY + L ALR S I L+L + N +
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 86 ALS-DPSAASSWVQNNILAFTPDVVFRYIAVGNEISPSDQAASFVLPAMQNIYNAIVSAN 144
++ S A+SWVQNN+ + P V +YIA GNE+ A +LPAM+N+ NA +SA
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQ--GGATQSILPAMRNL-NAALSAA 117
Query: 145 LQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFSYI 204
IKVST+I+ + NS+PPSAG F N+Y+ + + L TGAPLLANVYPYF+Y
Sbjct: 118 GLGAIKVSTSIRFDEVANSFPPSAGVFK---NAYMTDVARLLASTGAPLLANVYPYFAYR 174
Query: 205 GDTKDIRLDYALFTSQGTPVQD--GSLGYQNLFDASLDALYSALEKAGVPDLEVVVSETG 262
+ I L+YA F GT V+D L Y +LFDA +DA+Y+ALEKAG P ++VVVSE+G
Sbjct: 175 DNPGSISLNYATF-QPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESG 233
Query: 263 WPSEGGEAATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFG 322
WPS GG AA+ NA TY + +INHV GTPK+ + +ETY+FAMF+ENQK TER FG
Sbjct: 234 WPSAGGFAASAGNARTYNQGLINHVGGGTPKKR-EALETYIFAMFNENQKTGDATERSFG 292
Query: 323 LFSPNKQSKYEL 334
LF+P+K Y +
Sbjct: 293 LFNPDKSPAYNI 304
>pdb|1ZKX|A Chain A, Crystal Structure Of Glu158alaTHR159ALAASN160ALA- A Triple
Mutant Of Clostridium Botulinum Neurotoxin E Catalytic
Domain
pdb|1ZKX|B Chain B, Crystal Structure Of Glu158alaTHR159ALAASN160ALA- A Triple
Mutant Of Clostridium Botulinum Neurotoxin E Catalytic
Domain
Length = 420
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 46 LYHANGIT-KMRIYDPNEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILA 103
LY A GIT K I P + +RG+NIE L D+ ++ SA S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1ZN3|A Chain A, Crystal Structure Of Glu335ala Mutant Of Clostridium
Botulinum Neurotoxin Type E
pdb|1ZN3|B Chain B, Crystal Structure Of Glu335ala Mutant Of Clostridium
Botulinum Neurotoxin Type E
Length = 420
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 46 LYHANGIT-KMRIYDPNEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILA 103
LY A GIT K I P + +RG+NIE L D+ ++ SA S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1ZKW|A Chain A, Crystal Structure Of Arg347ala Mutant Of Botulinum
Neurotoxin E Catalytic Domain
pdb|1ZKW|B Chain B, Crystal Structure Of Arg347ala Mutant Of Botulinum
Neurotoxin E Catalytic Domain
Length = 420
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 46 LYHANGIT-KMRIYDPNEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILA 103
LY A GIT K I P + +RG+NIE L D+ ++ SA S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1ZL6|A Chain A, Crystal Structure Of Tyr350ala Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
pdb|1ZL6|B Chain B, Crystal Structure Of Tyr350ala Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
Length = 420
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 46 LYHANGIT-KMRIYDPNEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILA 103
LY A GIT K I P + +RG+NIE L D+ ++ SA S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1ZL5|A Chain A, Crystal Structure Of Glu335gln Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
pdb|1ZL5|B Chain B, Crystal Structure Of Glu335gln Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
Length = 420
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 46 LYHANGIT-KMRIYDPNEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILA 103
LY A GIT K I P + +RG+NIE L D+ ++ SA S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1T3A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin Type
E Catalytic Domain
pdb|1T3A|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin Type
E Catalytic Domain
Length = 421
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 46 LYHANGIT-KMRIYDPNEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILA 103
LY A GIT K I P + +RG+NIE L D+ ++ SA S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|3D3X|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype E
Catalytic Domain In Complex With Snap-25 Substrate
Peptide
pdb|3D3X|B Chain B, Crystal Structure Of Botulinum Neurotoxin Serotype E
Catalytic Domain In Complex With Snap-25 Substrate
Peptide
Length = 427
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 46 LYHANGIT-KMRIYDPNEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILA 103
LY A GIT K I P + +RG+NIE L D+ ++ SA S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|1T3C|A Chain A, Clostridium Botulinum Type E Catalytic Domain E212q Mutant
pdb|1T3C|B Chain B, Clostridium Botulinum Type E Catalytic Domain E212q Mutant
Length = 421
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 46 LYHANGIT-KMRIYDPNEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILA 103
LY A GIT K I P + +RG+NIE L D+ ++ SA S+ + N+LA
Sbjct: 220 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 276
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 46 LYHANGIT-KMRIYDPNEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILA 103
LY A GIT K I P + +RG+NIE L D+ ++ SA S+ + N+LA
Sbjct: 221 LYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIIT--SAQSNDIYTNLLA 277
>pdb|3IVD|A Chain A, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Uridine
pdb|3IVD|B Chain B, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Uridine
pdb|3IVE|A Chain A, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Cytidine
Length = 509
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 171 FADDANSYIGPIVQFLKQTGAPL-LANVYPY---------FSYIGDTKDIRLDYALFTSQ 220
F D + + GP + L + A + + N P+ F + D ++L A F
Sbjct: 56 FFDAGDYFTGPYISSLTKGKAIIDIXNTXPFDAVTIGNHEFDHGWDNTLLQLSQAKF--- 112
Query: 221 GTPVQDGSLGYQNLFDASLDALYSALEKAGV 251
P+ G++ YQN + D Y+ +EK GV
Sbjct: 113 --PIVQGNIFYQNSSKSFWDKPYTIIEKDGV 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,689,600
Number of Sequences: 62578
Number of extensions: 408401
Number of successful extensions: 1031
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 998
Number of HSP's gapped (non-prelim): 20
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)