Query 048190
Match_columns 336
No_of_seqs 117 out of 1211
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.7E-81 3.6E-86 600.6 18.2 308 26-335 1-309 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.6E-49 3.5E-54 362.2 21.6 248 23-328 43-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.2 5.3E-10 1.2E-14 108.2 18.8 242 40-334 26-329 (332)
4 PF03198 Glyco_hydro_72: Gluca 99.2 4.6E-10 1E-14 106.7 14.8 234 26-329 30-294 (314)
5 COG3867 Arabinogalactan endo-1 98.6 1.1E-06 2.4E-11 82.8 14.4 243 39-334 64-388 (403)
6 PRK10150 beta-D-glucuronidase; 98.4 0.00016 3.6E-09 75.7 24.7 234 44-333 319-584 (604)
7 PF00150 Cellulase: Cellulase 98.1 0.00036 7.8E-09 64.8 18.6 119 26-146 11-165 (281)
8 smart00633 Glyco_10 Glycosyl h 97.8 0.0012 2.6E-08 61.7 16.9 211 63-334 20-251 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.6 0.0043 9.2E-08 57.6 16.6 189 73-330 39-232 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 97.1 0.029 6.4E-07 53.4 16.8 95 25-119 17-132 (298)
11 TIGR03356 BGL beta-galactosida 95.7 2.2 4.8E-05 43.0 20.9 78 41-120 57-163 (427)
12 PRK10340 ebgA cryptic beta-D-g 93.5 6 0.00013 44.4 19.2 96 26-121 337-452 (1021)
13 PF00232 Glyco_hydro_1: Glycos 90.7 0.11 2.3E-06 52.9 1.2 279 41-333 61-442 (455)
14 PF02449 Glyco_hydro_42: Beta- 85.0 6.8 0.00015 38.5 9.9 81 41-121 13-140 (374)
15 PRK09936 hypothetical protein; 83.8 5.2 0.00011 38.3 8.0 59 25-83 21-96 (296)
16 COG3934 Endo-beta-mannanase [C 81.0 4.2 9.1E-05 41.6 6.5 183 94-334 123-312 (587)
17 cd02875 GH18_chitobiase Chitob 80.6 8.6 0.00019 37.8 8.6 93 51-145 55-150 (358)
18 PRK13511 6-phospho-beta-galact 77.8 8.3 0.00018 39.5 7.7 46 41-86 57-121 (469)
19 PLN02998 beta-glucosidase 73.6 10 0.00022 39.1 7.1 72 251-329 390-466 (497)
20 PLN02814 beta-glucosidase 73.1 11 0.00023 39.1 7.1 72 251-329 385-461 (504)
21 PF02449 Glyco_hydro_42: Beta- 72.1 39 0.00085 33.1 10.7 56 125-200 207-262 (374)
22 COG0621 MiaB 2-methylthioadeni 70.9 50 0.0011 33.6 11.1 63 122-203 275-337 (437)
23 PLN02849 beta-glucosidase 69.3 15 0.00033 38.0 7.2 73 251-329 383-461 (503)
24 cd06598 GH31_transferase_CtsZ 62.8 1.1E+02 0.0023 29.5 11.4 71 125-203 22-96 (317)
25 PF01229 Glyco_hydro_39: Glyco 60.2 1.5E+02 0.0032 30.4 12.4 241 48-332 50-351 (486)
26 cd00598 GH18_chitinase-like Th 58.4 24 0.00052 31.1 5.6 81 64-145 54-142 (210)
27 cd06545 GH18_3CO4_chitinase Th 57.1 36 0.00078 31.5 6.8 80 63-145 50-133 (253)
28 PRK09525 lacZ beta-D-galactosi 56.6 75 0.0016 35.9 10.2 96 26-121 353-465 (1027)
29 TIGR01579 MiaB-like-C MiaB-lik 56.4 1.1E+02 0.0023 30.5 10.5 137 38-203 167-330 (414)
30 PRK14332 (dimethylallyl)adenos 56.0 1.5E+02 0.0033 30.1 11.6 136 39-203 184-343 (449)
31 cd02874 GH18_CFLE_spore_hydrol 55.6 57 0.0012 31.0 8.1 82 62-145 48-138 (313)
32 PF00331 Glyco_hydro_10: Glyco 55.3 12 0.00027 36.1 3.4 213 63-333 63-312 (320)
33 PRK09589 celA 6-phospho-beta-g 55.2 37 0.0008 34.9 7.0 71 253-329 367-447 (476)
34 PF02055 Glyco_hydro_30: O-Gly 55.1 2.1E+02 0.0045 29.7 12.5 88 70-157 166-283 (496)
35 PF03662 Glyco_hydro_79n: Glyc 54.3 18 0.00039 35.2 4.4 81 63-143 113-203 (319)
36 PRK09593 arb 6-phospho-beta-gl 54.1 32 0.00068 35.4 6.3 70 254-329 369-448 (478)
37 PRK14336 (dimethylallyl)adenos 54.1 1.3E+02 0.0028 30.2 10.7 61 123-202 255-315 (418)
38 PF00925 GTP_cyclohydro2: GTP 53.5 18 0.0004 31.6 4.0 39 42-80 130-168 (169)
39 TIGR01233 lacG 6-phospho-beta- 53.4 43 0.00094 34.2 7.2 46 41-86 56-120 (467)
40 PRK14330 (dimethylallyl)adenos 53.0 1.7E+02 0.0038 29.4 11.4 75 110-203 250-332 (434)
41 PF14587 Glyco_hydr_30_2: O-Gl 52.9 2.5E+02 0.0055 28.1 14.2 93 63-157 108-228 (384)
42 PRK14328 (dimethylallyl)adenos 51.4 1.7E+02 0.0038 29.4 11.2 135 39-202 177-338 (439)
43 PF12876 Cellulase-like: Sugar 49.8 45 0.00098 25.6 5.3 49 104-154 5-63 (88)
44 smart00481 POLIIIAc DNA polyme 49.5 70 0.0015 22.9 6.0 45 37-81 14-63 (67)
45 PRK14327 (dimethylallyl)adenos 49.4 1.2E+02 0.0027 31.4 9.9 135 39-202 242-403 (509)
46 PRK09852 cryptic 6-phospho-bet 49.1 57 0.0012 33.5 7.3 71 253-329 365-444 (474)
47 PRK14338 (dimethylallyl)adenos 47.7 1.2E+02 0.0026 30.9 9.3 135 39-202 185-346 (459)
48 PRK00393 ribA GTP cyclohydrola 47.4 31 0.00067 31.1 4.5 36 44-79 134-169 (197)
49 TIGR00505 ribA GTP cyclohydrol 47.0 32 0.00069 30.8 4.5 36 44-79 131-166 (191)
50 PF01055 Glyco_hydro_31: Glyco 45.0 1.3E+02 0.0027 30.1 9.0 135 125-308 41-180 (441)
51 cd02872 GH18_chitolectin_chito 45.0 1E+02 0.0022 30.0 8.1 18 126-143 133-150 (362)
52 KOG0626 Beta-glucosidase, lact 44.4 49 0.0011 34.4 5.9 76 251-333 405-498 (524)
53 PRK14334 (dimethylallyl)adenos 44.4 1.5E+02 0.0032 30.0 9.4 135 39-202 168-328 (440)
54 COG4782 Uncharacterized protei 43.2 79 0.0017 31.5 6.8 38 248-288 142-185 (377)
55 PF14488 DUF4434: Domain of un 43.2 1.4E+02 0.0031 26.0 7.9 78 63-143 69-151 (166)
56 PRK15014 6-phospho-beta-glucos 42.9 40 0.00087 34.6 5.1 71 253-329 368-448 (477)
57 PF05990 DUF900: Alpha/beta hy 42.4 69 0.0015 29.4 6.1 37 249-288 45-87 (233)
58 PRK12485 bifunctional 3,4-dihy 40.4 36 0.00077 33.9 4.1 33 44-77 331-363 (369)
59 PF06180 CbiK: Cobalt chelatas 40.3 3.2E+02 0.007 25.8 11.1 140 36-204 56-209 (262)
60 cd00641 GTP_cyclohydro2 GTP cy 37.0 55 0.0012 29.2 4.5 36 44-79 133-168 (193)
61 TIGR01125 MiaB-like tRNA modif 35.8 2.9E+02 0.0062 27.7 9.9 137 39-203 165-327 (430)
62 PRK14019 bifunctional 3,4-dihy 35.6 47 0.001 33.0 4.1 36 44-80 328-363 (367)
63 PRK14042 pyruvate carboxylase 33.6 4E+02 0.0086 28.4 10.7 93 40-140 94-196 (596)
64 PRK14339 (dimethylallyl)adenos 33.3 5.1E+02 0.011 25.9 12.1 61 123-202 261-321 (420)
65 PF13547 GTA_TIM: GTA TIM-barr 33.0 1E+02 0.0022 29.6 5.6 81 108-202 18-111 (299)
66 PRK09318 bifunctional 3,4-dihy 32.9 64 0.0014 32.3 4.5 38 44-81 320-357 (387)
67 PF14871 GHL6: Hypothetical gl 32.8 1.2E+02 0.0026 25.5 5.6 43 40-82 2-67 (132)
68 PF04909 Amidohydro_2: Amidohy 32.5 1.2E+02 0.0026 27.3 6.1 54 130-198 84-138 (273)
69 KOG1065 Maltase glucoamylase a 31.8 3.5E+02 0.0076 29.8 10.0 143 130-313 310-453 (805)
70 PRK09311 bifunctional 3,4-dihy 31.8 68 0.0015 32.3 4.5 38 43-80 338-375 (402)
71 cd06594 GH31_glucosidase_YihQ 31.7 4.7E+02 0.01 25.1 11.2 70 125-203 21-97 (317)
72 PRK08815 GTP cyclohydrolase; P 31.3 69 0.0015 31.9 4.5 38 44-81 305-342 (375)
73 PRK09314 bifunctional 3,4-dihy 31.2 67 0.0014 31.6 4.3 34 43-76 300-334 (339)
74 PLN02831 Bifunctional GTP cycl 30.8 71 0.0015 32.7 4.5 38 44-81 373-410 (450)
75 TIGR00510 lipA lipoate synthas 30.3 4.6E+02 0.0099 25.2 9.8 131 43-203 99-247 (302)
76 PRK09319 bifunctional 3,4-dihy 29.7 75 0.0016 33.3 4.5 96 44-145 343-441 (555)
77 PRK14337 (dimethylallyl)adenos 29.5 3.3E+02 0.0072 27.5 9.2 135 39-202 178-340 (446)
78 TIGR03632 bact_S11 30S ribosom 28.8 1.2E+02 0.0027 24.5 4.8 37 41-77 50-91 (108)
79 PRK12581 oxaloacetate decarbox 28.6 4.6E+02 0.01 27.0 9.9 39 44-82 111-155 (468)
80 COG1433 Uncharacterized conser 28.2 1.3E+02 0.0028 25.1 4.9 40 41-80 55-94 (121)
81 TIGR01574 miaB-methiolase tRNA 28.1 6.3E+02 0.014 25.4 11.4 74 110-202 257-338 (438)
82 COG2730 BglC Endoglucanase [Ca 27.5 5.5E+02 0.012 25.6 10.3 102 41-143 76-218 (407)
83 COG1453 Predicted oxidoreducta 26.8 40 0.00088 33.5 1.9 52 52-104 51-106 (391)
84 COG2159 Predicted metal-depend 26.6 3E+02 0.0064 26.3 7.8 96 130-268 112-209 (293)
85 cd04743 NPD_PKS 2-Nitropropane 26.3 5.6E+02 0.012 25.0 9.7 79 24-119 56-134 (320)
86 TIGR00089 RNA modification enz 26.2 6E+02 0.013 25.3 10.4 137 38-203 168-331 (429)
87 PRK14331 (dimethylallyl)adenos 26.2 6.8E+02 0.015 25.1 11.3 134 39-201 176-335 (437)
88 TIGR03822 AblA_like_2 lysine-2 25.9 4E+02 0.0087 25.6 8.7 41 42-82 157-207 (321)
89 PRK14040 oxaloacetate decarbox 25.9 6E+02 0.013 27.0 10.5 91 42-140 101-197 (593)
90 KOG0078 GTP-binding protein SE 25.8 1.5E+02 0.0032 27.1 5.2 61 54-119 62-127 (207)
91 COG3325 ChiA Chitinase [Carboh 25.7 3.4E+02 0.0073 27.7 8.1 127 72-218 128-269 (441)
92 PRK11449 putative deoxyribonuc 25.6 2.6E+02 0.0055 26.1 7.0 33 254-287 91-123 (258)
93 PRK12331 oxaloacetate decarbox 25.1 7.5E+02 0.016 25.2 11.0 89 44-140 102-196 (448)
94 PRK09282 pyruvate carboxylase 24.1 8.2E+02 0.018 25.9 11.1 90 43-140 101-196 (592)
95 COG4213 XylF ABC-type xylose t 24.0 2.9E+02 0.0062 27.1 7.0 73 63-153 176-249 (341)
96 PRK14333 (dimethylallyl)adenos 24.0 4E+02 0.0088 26.9 8.6 62 123-203 286-347 (448)
97 smart00636 Glyco_18 Glycosyl h 23.9 1.4E+02 0.0031 28.4 5.1 78 65-143 57-142 (334)
98 PRK03941 NTPase; Reviewed 23.6 4.7E+02 0.01 23.2 7.9 46 97-142 16-61 (174)
99 PRK15321 putative type III sec 23.3 2.2E+02 0.0049 23.0 5.1 45 238-294 38-83 (120)
100 COG4822 CbiK Cobalamin biosynt 23.0 6.2E+02 0.014 23.6 10.5 53 130-203 152-204 (265)
101 TIGR03234 OH-pyruv-isom hydrox 22.1 2.2E+02 0.0047 25.9 5.8 51 26-77 3-57 (254)
102 TIGR03628 arch_S11P archaeal r 21.8 1.9E+02 0.0041 23.9 4.7 36 41-76 53-101 (114)
103 cd06592 GH31_glucosidase_KIAA1 21.7 7E+02 0.015 23.7 9.6 69 123-203 26-96 (303)
104 PF00411 Ribosomal_S11: Riboso 21.6 1.6E+02 0.0035 23.8 4.3 39 41-79 50-93 (110)
105 PRK07198 hypothetical protein; 21.5 84 0.0018 31.6 3.0 38 44-81 338-376 (418)
106 COG0807 RibA GTP cyclohydrolas 21.4 1.8E+02 0.004 26.2 4.9 40 44-83 133-172 (193)
107 COG0431 Predicted flavoprotein 20.9 2.9E+02 0.0063 24.2 6.2 77 92-188 18-95 (184)
108 COG0159 TrpA Tryptophan syntha 20.6 1.4E+02 0.0031 28.3 4.3 32 110-141 227-264 (265)
109 PF13721 SecD-TM1: SecD export 20.3 2.6E+02 0.0056 22.4 5.1 32 26-57 34-65 (101)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.7e-81 Score=600.58 Aligned_cols=308 Identities=54% Similarity=0.915 Sum_probs=255.1
Q ss_pred eeeEecCCCCCCCChHHHHHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeecCCcCcCCC-CHHHHHHHHHHhhhhc
Q 048190 26 IGVCYGRVANNLPSDQEVVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVANGDIQALS-DPSAASSWVQNNILAF 104 (336)
Q Consensus 26 ~Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~~~~~~~~a-~~~~a~~wv~~~v~~~ 104 (336)
+|||||+.++++|+|.++++++|+++|++||+|++|+++|+|++++|++|++||+|+++++++ ++..|..|++++|.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 699999999999999999999999999999999999999999999999999999999999998 8889999999999999
Q ss_pred CCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHH
Q 048190 105 TPDVVFRYIAVGNEISPSDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQ 184 (336)
Q Consensus 105 ~~~~~i~~I~VGNE~l~~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vd 184 (336)
+|..+|++|+||||++...... .|+++|+++|++|++.||+++|||+|+++++++..+||||+|.|+.++.+.|.++++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~-~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~ 159 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA-YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLK 159 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG-GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce-eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHH
Confidence 9999999999999999862222 899999999999999999989999999999999999999999999998899999999
Q ss_pred HhhhcCCcceeecCCCccccCCCCcccccccccccCCccccCCCCcchhhHHHHHHHHHHHHHHhCCCCccEEEeccccC
Q 048190 185 FLKQTGAPLLANVYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSETGWP 264 (336)
Q Consensus 185 fl~~~~~~~~vN~yPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWP 264 (336)
||.++++|||+|+||||.+..+|..++++||+|++.+... |+++.|+|+||+|+|++++||+++|+++++|+|+|||||
T Consensus 160 fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWP 238 (310)
T PF00332_consen 160 FLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWP 238 (310)
T ss_dssp HHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---
T ss_pred HhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccc
Confidence 9999999999999999999999999999999999877666 778899999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCCCCCCCceeeecCCCceeeeCC
Q 048190 265 SEGGEAATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFGLFSPNKQSKYELD 335 (336)
Q Consensus 265 s~G~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~~~~E~~wGlf~~~~~~Ky~l~ 335 (336)
|+|+..++.+||+.|++++++++.+|||+||+.++++||||+|||+||+++++|+|||||++||+|||+|+
T Consensus 239 s~G~~~a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~ 309 (310)
T PF00332_consen 239 SAGDPGATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLD 309 (310)
T ss_dssp SSSSTTCSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS---
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCC
Confidence 99999999999999999999999999999999999999999999999998779999999999999999985
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-49 Score=362.22 Aligned_cols=248 Identities=21% Similarity=0.284 Sum_probs=199.3
Q ss_pred CCCeeeEecCCCCCC--CChHHHHHHHHh-CCC-CEEEEccCCh----hHHHHHhcCCCeEEEeecCCcCcCCCCHHHHH
Q 048190 23 TRPIGVCYGRVANNL--PSDQEVVDLYHA-NGI-TKMRIYDPNE----PTLQALRGSNIELMLGVANGDIQALSDPSAAS 94 (336)
Q Consensus 23 ~~~~Gi~Y~~~~~~~--~s~~~v~~~l~~-~~~-~~VRlY~~d~----~vl~A~~~~gikv~lGv~~~~~~~~a~~~~a~ 94 (336)
-++++|||+|+.+++ ++.+++..+|.. .++ ..||+|++|+ +|++|+...|+||+||||..+.-+.+ .+
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~-~~--- 118 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA-VE--- 118 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh-HH---
Confidence 358999999998886 566888887765 233 4999999875 79999999999999999997644432 22
Q ss_pred HHHHHhhhhcCCCceEEEEEecccccCC-CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccc
Q 048190 95 SWVQNNILAFTPDVVFRYIAVGNEISPS-DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFAD 173 (336)
Q Consensus 95 ~wv~~~v~~~~~~~~i~~I~VGNE~l~~-~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~ 173 (336)
.-+..+++++..++.|++|+||||+|+| +.++++|+.+|.+||++|+.+|+ +.||+|+|+|.++.+
T Consensus 119 ~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy--~gpV~T~dsw~~~~~----------- 185 (305)
T COG5309 119 KTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGY--DGPVTTVDSWNVVIN----------- 185 (305)
T ss_pred HHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCC--CCceeecccceeeeC-----------
Confidence 1255667788889999999999999998 89999999999999999999999 469999999998876
Q ss_pred cccccchhhHHHhhhcCCcceeecCCCccccCCCCcccccccccccCCccccCCCCcchhhHHHHHHHHHHHHHHhCCCC
Q 048190 174 DANSYIGPIVQFLKQTGAPLLANVYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPD 253 (336)
Q Consensus 174 ~~~~~l~~~vdfl~~~~~~~~vN~yPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~ 253 (336)
+|.|++..|| +|+|.||||+.... .++.+ + ++-.|++-++. ....+
T Consensus 186 --np~l~~~SDf-------ia~N~~aYwd~~~~-----------------a~~~~---~-f~~~q~e~vqs----a~g~~ 231 (305)
T COG5309 186 --NPELCQASDF-------IAANAHAYWDGQTV-----------------ANAAG---T-FLLEQLERVQS----ACGTK 231 (305)
T ss_pred --ChHHhhhhhh-------hhcccchhccccch-----------------hhhhh---H-HHHHHHHHHHH----hcCCC
Confidence 3667777776 79999999995321 11111 2 23233443332 22345
Q ss_pred ccEEEeccccCCCCCC----CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCCC--CCCCceeeecCC
Q 048190 254 LEVVVSETGWPSEGGE----AATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGPA--ETERHFGLFSPN 327 (336)
Q Consensus 254 ~~v~I~ETGWPs~G~~----~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~~--~~E~~wGlf~~~ 327 (336)
|+++|+||||||.|.. .||++||+.|+++++|.+++ +++++|+||+|||+||..+ ++|+|||++..+
T Consensus 232 k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~-------~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~s~ 304 (305)
T COG5309 232 KTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS-------CGYDVFVFEAFDDDWKADGSYGVEKYWGVLSSD 304 (305)
T ss_pred ccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc-------cCccEEEeeeccccccCccccchhhceeeeccC
Confidence 9999999999999998 79999999999999999853 5899999999999999864 799999999987
Q ss_pred C
Q 048190 328 K 328 (336)
Q Consensus 328 ~ 328 (336)
|
T Consensus 305 ~ 305 (305)
T COG5309 305 R 305 (305)
T ss_pred C
Confidence 5
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.24 E-value=5.3e-10 Score=108.20 Aligned_cols=242 Identities=18% Similarity=0.233 Sum_probs=126.4
Q ss_pred hHHHHHHHHhCCCCEEEEcc---------CC-hh---HHHHHhcCCCeEEEeecCCc---------CcC-C-C-CHHHHH
Q 048190 40 DQEVVDLYHANGITKMRIYD---------PN-EP---TLQALRGSNIELMLGVANGD---------IQA-L-S-DPSAAS 94 (336)
Q Consensus 40 ~~~v~~~l~~~~~~~VRlY~---------~d-~~---vl~A~~~~gikv~lGv~~~~---------~~~-~-a-~~~~a~ 94 (336)
..++.++||..|++.||+-- +| .. ..+.+++.||+|+|-.--+| .|. . . +.++..
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 47899999999999888752 11 13 44455789999999987653 111 1 1 233322
Q ss_pred HHHHHh----hhhcC-CCceEEEEEecccccCC-------CcchHHHHHHHHHHHHHHHhcCCCCCeeEE--eeeecccc
Q 048190 95 SWVQNN----ILAFT-PDVVFRYIAVGNEISPS-------DQAASFVLPAMQNIYNAIVSANLQDQIKVS--TAIQTSLL 160 (336)
Q Consensus 95 ~wv~~~----v~~~~-~~~~i~~I~VGNE~l~~-------~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vt--ta~~~~~~ 160 (336)
+-|.+. +.... .....+.|-||||.-.+ ....+.+...++.-.+++|+..- +++|- .+...+.
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~~~~~~- 182 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLANGGDN- 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES-TTSH-
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEECCCCch-
Confidence 223222 11110 23678899999996443 22477888888888888887654 34443 2221111
Q ss_pred ccccCCCCccccccccccchhhHHHhhhcCCcceeecCCCccccCCCCcccccccccccCCccccCCCCcchhhHHHHHH
Q 048190 161 GNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLD 240 (336)
Q Consensus 161 ~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~da~~d 240 (336)
..++--+......-+|| |+++++.||||... .+.+..+++
T Consensus 183 --------~~~~~~f~~l~~~g~d~-----DviGlSyYP~w~~~---------------------------l~~l~~~l~ 222 (332)
T PF07745_consen 183 --------DLYRWFFDNLKAAGVDF-----DVIGLSYYPFWHGT---------------------------LEDLKNNLN 222 (332)
T ss_dssp --------HHHHHHHHHHHHTTGG------SEEEEEE-STTST----------------------------HHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCCCc-----ceEEEecCCCCcch---------------------------HHHHHHHHH
Confidence 00000001111122455 89999999999840 111222222
Q ss_pred HHHHHHHHhCCCCccEEEeccccCCCCCC-----------------CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEE
Q 048190 241 ALYSALEKAGVPDLEVVVSETGWPSEGGE-----------------AATVDNASTYYKNVINHVSAGTPKRPGKVIETYL 303 (336)
Q Consensus 241 a~~~a~~~~g~~~~~v~I~ETGWPs~G~~-----------------~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~ 303 (336)
.+ .++. +|||+|.|||||..... .+|++.|+.|++++++.+.. .| .+++..+||
T Consensus 223 ~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p--~~~g~GvfY 293 (332)
T PF07745_consen 223 DL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VP--NGGGLGVFY 293 (332)
T ss_dssp HH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S----TTEEEEEE
T ss_pred HH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hc--cCCeEEEEe
Confidence 21 2332 58999999999998211 36899999999999998842 11 135788988
Q ss_pred EEeecCC------CCCCCCCCCceeeecCCCceeeeC
Q 048190 304 FAMFDEN------QKGPAETERHFGLFSPNKQSKYEL 334 (336)
Q Consensus 304 FeafDe~------wK~~~~~E~~wGlf~~~~~~Ky~l 334 (336)
-|.---+ |..|...|.. +||+.+|++--+|
T Consensus 294 WeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 294 WEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp E-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred eccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 7732111 1122244444 8999999876544
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.19 E-value=4.6e-10 Score=106.71 Aligned_cols=234 Identities=20% Similarity=0.270 Sum_probs=115.0
Q ss_pred eeeEecCCCCC-------CCCh----HHHHHHHHhCCCCEEEEccCCh-----hHHHHHhcCCCeEEEeecCCcCcCCCC
Q 048190 26 IGVCYGRVANN-------LPSD----QEVVDLYHANGITKMRIYDPNE-----PTLQALRGSNIELMLGVANGDIQALSD 89 (336)
Q Consensus 26 ~Gi~Y~~~~~~-------~~s~----~~v~~~l~~~~~~~VRlY~~d~-----~vl~A~~~~gikv~lGv~~~~~~~~a~ 89 (336)
.||.|.|-++. .-+. ++.+..||++|++.||+|+.|| ..+.++++.||-|++.+... ..++.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 59999988762 1122 4456689999999999999884 69999999999999999876 223321
Q ss_pred HHHHHHH-------HHHhhhhcCCCceEEEEEecccccCC---CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccc
Q 048190 90 PSAASSW-------VQNNILAFTPDVVFRYIAVGNEISPS---DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSL 159 (336)
Q Consensus 90 ~~~a~~w-------v~~~v~~~~~~~~i~~I~VGNE~l~~---~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~ 159 (336)
...+..| ...-|..|..-+++-+..+|||++.. ...++.+-.++|++|+.+++.|+ ++|||+-+-.-.
T Consensus 109 ~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsaaD~- 186 (314)
T PF03198_consen 109 SDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSAADD- 186 (314)
T ss_dssp TS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE----
T ss_pred CCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEccCC-
Confidence 1111112 23335555444889999999999986 22589999999999999999998 569998753211
Q ss_pred cccccCCCCccccccccccchhhHHHhhh-----cCCcceeecCCCccccCCCCcccccccccccCCccccCCCCcchhh
Q 048190 160 LGNSYPPSAGSFADDANSYIGPIVQFLKQ-----TGAPLLANVYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNL 234 (336)
Q Consensus 160 ~~~~~pPS~~~f~~~~~~~l~~~vdfl~~-----~~~~~~vN~yPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~ 234 (336)
...-.++.+||.. ..|.+++|.|-|=.. ..|+.+ .|..+
T Consensus 187 ----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~-----------Stf~~S---------Gy~~l 230 (314)
T PF03198_consen 187 ----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEWCGD-----------STFETS---------GYDRL 230 (314)
T ss_dssp ----------------TTTHHHHHHHTTBTT-----S-EEEEE----SS-------------HHHH---------SHHHH
T ss_pred ----------------hhHHHHHHHHhcCCCcccccceeeeccceecCC-----------Cccccc---------cHHHH
Confidence 0112245556542 446789998876542 112211 12222
Q ss_pred HHHHHHHHHHHHHHhCCCCccEEEeccccCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCC
Q 048190 235 FDASLDALYSALEKAGVPDLEVVVSETGWPSEGGEAATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGP 314 (336)
Q Consensus 235 ~da~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~ 314 (336)
+ +....-.+||+.+|.|.-+.....=+ |-+..|-.++..-. ..-..||.|-|.
T Consensus 231 ----~-------~~f~~y~vPvffSEyGCn~~~pR~f~-ev~aly~~~Mt~v~-----------SGGivYEy~~e~---- 283 (314)
T PF03198_consen 231 ----T-------KEFSNYSVPVFFSEYGCNTVTPRTFT-EVPALYSPEMTDVW-----------SGGIVYEYFQEA---- 283 (314)
T ss_dssp ----H-------HHHTT-SS-EEEEEE---SSSS---T-HHHHHTSHHHHTTE-----------EEEEES-SB--S----
T ss_pred ----H-------HHhhCCCCCeEEcccCCCCCCCccch-HhHHhhCccchhhe-----------eceEEEEEeccC----
Confidence 1 11223469999999999765532111 22233332222222 123455666553
Q ss_pred CCCCCceeeecCCCc
Q 048190 315 AETERHFGLFSPNKQ 329 (336)
Q Consensus 315 ~~~E~~wGlf~~~~~ 329 (336)
.+|||...++.
T Consensus 284 ----n~yGlV~~~~~ 294 (314)
T PF03198_consen 284 ----NNYGLVEISGD 294 (314)
T ss_dssp ----SS--SEEE-TT
T ss_pred ----CceEEEEEcCC
Confidence 67898876654
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=1.1e-06 Score=82.83 Aligned_cols=243 Identities=18% Similarity=0.280 Sum_probs=139.0
Q ss_pred ChHHHHHHHHhCCCCEEEEc------cCC--------h------hHHHHHhcCCCeEEEeecCCcCcCCC---CHHHHHH
Q 048190 39 SDQEVVDLYHANGITKMRIY------DPN--------E------PTLQALRGSNIELMLGVANGDIQALS---DPSAASS 95 (336)
Q Consensus 39 s~~~v~~~l~~~~~~~VRlY------~~d--------~------~vl~A~~~~gikv~lGv~~~~~~~~a---~~~~a~~ 95 (336)
-.+++.+.||..|++.||+- ++| . .+-+.+++.||||++-.--+| ..+ -+..-++
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSD--fwaDPakQ~kPka 141 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSD--FWADPAKQKKPKA 141 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchh--hccChhhcCCcHH
Confidence 45788899999999988874 343 1 233444678999999876654 111 1111122
Q ss_pred HHHH-------hhhhcC---------CCceEEEEEecccccCC------Cc-chHHHHHHHHHHHHHHHhcCCCCCeeEE
Q 048190 96 WVQN-------NILAFT---------PDVVFRYIAVGNEISPS------DQ-AASFVLPAMQNIYNAIVSANLQDQIKVS 152 (336)
Q Consensus 96 wv~~-------~v~~~~---------~~~~i~~I~VGNE~l~~------~~-s~~~L~~~i~~vk~~L~~~g~~~~i~Vt 152 (336)
|... +|-.|- ....+..|-||||.-.. +. ..+.+...++.--+++|... .+|+|-
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~ 219 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVA 219 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEE
Confidence 3222 221110 23567789999997543 11 34555666666666665533 457775
Q ss_pred eeeeccccccccCCCCccccccccccchhhHHHhhhcCCcceeecCCCccccCCCCcccccccccccCCccccCCCCcch
Q 048190 153 TAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQ 232 (336)
Q Consensus 153 ta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~ 232 (336)
.- +.+.-.+| .|+--...+-+.-+|| |+|+.--||||...-+ + .+
T Consensus 220 lH-----la~g~~n~--~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~-------------------n----L~ 264 (403)
T COG3867 220 LH-----LAEGENNS--LYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN-------------------N----LT 264 (403)
T ss_pred EE-----ecCCCCCc--hhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH-------------------H----HH
Confidence 42 22222222 2321111233334565 8899999999995210 0 11
Q ss_pred hhHHHHHHHHHHHHHHhCCCCccEEEecccc--------------CCCCCC---CCCHHHHHHHHHHHHHhhcCCCCCCC
Q 048190 233 NLFDASLDALYSALEKAGVPDLEVVVSETGW--------------PSEGGE---AATVDNASTYYKNVINHVSAGTPKRP 295 (336)
Q Consensus 233 n~~da~~da~~~a~~~~g~~~~~v~I~ETGW--------------Ps~G~~---~as~~na~~y~~~~~~~~~~gtp~~~ 295 (336)
..++++ .. --+|.|+|.||+. |+.+.. ..+++-|.+|.+++++.+. .+|.
T Consensus 265 ~nl~di--------a~--rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~-nvp~-- 331 (403)
T COG3867 265 TNLNDI--------AS--RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVK-NVPK-- 331 (403)
T ss_pred hHHHHH--------HH--HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHH-hCCC--
Confidence 112222 21 1368999999998 776654 5788999999999999883 1222
Q ss_pred CCceeEEEEEe-------------------ecCCCCCCCCCCCceeeecCCCceeeeC
Q 048190 296 GKVIETYLFAM-------------------FDENQKGPAETERHFGLFSPNKQSKYEL 334 (336)
Q Consensus 296 ~~~~~~~~Fea-------------------fDe~wK~~~~~E~~wGlf~~~~~~Ky~l 334 (336)
+++..+||.|- -.|+|+.|..++.. -||+-+|.|-.+|
T Consensus 332 ~~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl 388 (403)
T COG3867 332 SNGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSL 388 (403)
T ss_pred CCceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcch
Confidence 23677777761 23444443333333 5788888776555
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.35 E-value=0.00016 Score=75.65 Aligned_cols=234 Identities=14% Similarity=0.124 Sum_probs=132.1
Q ss_pred HHHHHhCCCCEEEEcc--CChhHHHHHhcCCCeEEEeecCC---------------cCcCCC----C---HHHHHHHHHH
Q 048190 44 VDLYHANGITKMRIYD--PNEPTLQALRGSNIELMLGVANG---------------DIQALS----D---PSAASSWVQN 99 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~--~d~~vl~A~~~~gikv~lGv~~~---------------~~~~~a----~---~~~a~~wv~~ 99 (336)
++++|..|++.||+-. .++..+.+|.+.||-|+.=++.- +.+... + .+...+-+++
T Consensus 319 ~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (604)
T PRK10150 319 HNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRE 398 (604)
T ss_pred HHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 5678899999999943 35789999999999988644321 001111 0 1122232445
Q ss_pred hhhhcCCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccc
Q 048190 100 NILAFTPDVVFRYIAVGNEISPSDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYI 179 (336)
Q Consensus 100 ~v~~~~~~~~i~~I~VGNE~l~~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l 179 (336)
-|..+...-.|..-++|||.-.. .+..-..++.+.+.+++.- .+=||+.+..+. . +|. ...+
T Consensus 399 mv~r~~NHPSIi~Ws~gNE~~~~---~~~~~~~~~~l~~~~k~~D--ptR~vt~~~~~~---~--~~~--------~~~~ 460 (604)
T PRK10150 399 LIARDKNHPSVVMWSIANEPASR---EQGAREYFAPLAELTRKLD--PTRPVTCVNVMF---A--TPD--------TDTV 460 (604)
T ss_pred HHHhccCCceEEEEeeccCCCcc---chhHHHHHHHHHHHHHhhC--CCCceEEEeccc---C--Ccc--------cccc
Confidence 55555544567789999996432 1222344455555555543 334677664211 0 110 0112
Q ss_pred hhhHHHhhhcCCcceeecCCCccccCCCCcccccccccccCCccccCCCCcchhhHHHHHHHHHHHHHHhCCCCccEEEe
Q 048190 180 GPIVQFLKQTGAPLLANVYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVS 259 (336)
Q Consensus 180 ~~~vdfl~~~~~~~~vN~yPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ 259 (336)
.+++ |+++.|.|+=|-. ++... .. ....++..+.. ..+. + +||++++
T Consensus 461 ~~~~-------Dv~~~N~Y~~wy~--~~~~~----~~--------------~~~~~~~~~~~---~~~~--~-~kP~~is 507 (604)
T PRK10150 461 SDLV-------DVLCLNRYYGWYV--DSGDL----ET--------------AEKVLEKELLA---WQEK--L-HKPIIIT 507 (604)
T ss_pred cCcc-------cEEEEcccceecC--CCCCH----HH--------------HHHHHHHHHHH---HHHh--c-CCCEEEE
Confidence 2334 4478898764331 11000 00 01112222111 1111 2 7999999
Q ss_pred ccccCCCCC------CCCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCCC--CCCCceeeecCCCcee
Q 048190 260 ETGWPSEGG------EAATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGPA--ETERHFGLFSPNKQSK 331 (336)
Q Consensus 260 ETGWPs~G~------~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~~--~~E~~wGlf~~~~~~K 331 (336)
|.|+.+.-+ ..-|.+.|..|++...+.+.+ +|. -...|+..+||-....+. --..+.||++.||+||
T Consensus 508 Eyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~----~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k 582 (604)
T PRK10150 508 EYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR----VPA-VVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQPK 582 (604)
T ss_pred ccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc----CCc-eEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCCh
Confidence 999765321 145789999999888777643 344 677888899995544321 1235789999999999
Q ss_pred ee
Q 048190 332 YE 333 (336)
Q Consensus 332 y~ 333 (336)
-.
T Consensus 583 ~~ 584 (604)
T PRK10150 583 SA 584 (604)
T ss_pred HH
Confidence 64
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.10 E-value=0.00036 Score=64.76 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=78.5
Q ss_pred eeeEecCCCCCCCChHHHHHHHHhCCCCEEEEccC-------C-------------hhHHHHHhcCCCeEEEeecCCc--
Q 048190 26 IGVCYGRVANNLPSDQEVVDLYHANGITKMRIYDP-------N-------------EPTLQALRGSNIELMLGVANGD-- 83 (336)
Q Consensus 26 ~Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VRlY~~-------d-------------~~vl~A~~~~gikv~lGv~~~~-- 83 (336)
.|+|-. ..+.- ..++.++.+++.|++.||+.-. + ..+|+++++.||+|+|.+....
T Consensus 11 ~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w 88 (281)
T PF00150_consen 11 RGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGW 88 (281)
T ss_dssp EEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTC
T ss_pred eeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 466655 21111 6688889999999999999721 1 1588888999999999988741
Q ss_pred --Cc-CCCCHHHHHHHHHH----hhhhcCCCceEEEEEecccccCC-Cc------chHHHHHHHHHHHHHHHhcCCC
Q 048190 84 --IQ-ALSDPSAASSWVQN----NILAFTPDVVFRYIAVGNEISPS-DQ------AASFVLPAMQNIYNAIVSANLQ 146 (336)
Q Consensus 84 --~~-~~a~~~~a~~wv~~----~v~~~~~~~~i~~I~VGNE~l~~-~~------s~~~L~~~i~~vk~~L~~~g~~ 146 (336)
.. .........+|+++ -...|.....|.++=+.||+... .. ....+.+.++.+-++|++.+-.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 89 ANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp SSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred cccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCc
Confidence 11 11133333344333 22234233567799999999875 21 2478889999999999999863
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.83 E-value=0.0012 Score=61.68 Aligned_cols=211 Identities=15% Similarity=0.102 Sum_probs=113.6
Q ss_pred hHHHHHhcCCCeEEE--eecCCcCcCCC---C----HHHHHHHHHHhhhhcCCCceEEEEEecccccCCCc------chH
Q 048190 63 PTLQALRGSNIELML--GVANGDIQALS---D----PSAASSWVQNNILAFTPDVVFRYIAVGNEISPSDQ------AAS 127 (336)
Q Consensus 63 ~vl~A~~~~gikv~l--Gv~~~~~~~~a---~----~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~------s~~ 127 (336)
.+++.+++.||+|-- -+|....+... . .....+++++.+..|. ..|...-|.||.+..+. ...
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~--g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRYK--GKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHhC--CcceEEEEeeecccCCCcccccchHH
Confidence 456666777877622 25654434322 1 2344566666666663 56889999999986421 111
Q ss_pred HHH--HHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcC---CcceeecCCCcc
Q 048190 128 FVL--PAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTG---APLLANVYPYFS 202 (336)
Q Consensus 128 ~L~--~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~---~~~~vN~yPff~ 202 (336)
..+ .+|+..-+..+++. .++++-.-+ .++. .++. -...+..+++.|.+.+ |-+++..|-+.+
T Consensus 98 ~~~G~~~i~~af~~ar~~~--P~a~l~~Nd-y~~~---~~~~-------k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~ 164 (254)
T smart00633 98 QILGEDYIEKAFRYAREAD--PDAKLFYND-YNTE---EPNA-------KRQAIYELVKKLKAKGVPIDGIGLQSHLSLG 164 (254)
T ss_pred HhcChHHHHHHHHHHHHhC--CCCEEEEec-cCCc---CccH-------HHHHHHHHHHHHHHCCCccceeeeeeeecCC
Confidence 222 34444444444443 245553322 1111 0100 0122344555554433 333443332211
Q ss_pred ccCCCCcccccccccccCCccccCCCCcchhhHHHHHHHHHHHHHHhCCCCccEEEeccccCCCCCCCCCHHHHHHHHHH
Q 048190 203 YIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSETGWPSEGGEAATVDNASTYYKN 282 (336)
Q Consensus 203 ~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~~as~~na~~y~~~ 282 (336)
. | + .+.+...|++++..++||+|||.+-|..+ +++.|+.++++
T Consensus 165 ~---~-------------------------~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~ 207 (254)
T smart00633 165 S---P-------------------------N-----IAEIRAALDRFASLGLEIQITELDISGYP----NPQAQAADYEE 207 (254)
T ss_pred C---C-------------------------C-----HHHHHHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHH
Confidence 0 0 0 11233344444445899999999998763 45889999999
Q ss_pred HHHhhcCCCCCCCCCceeEEEEEeecC-CCCCCCCCCCceeeecCCCceeeeC
Q 048190 283 VINHVSAGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFGLFSPNKQSKYEL 334 (336)
Q Consensus 283 ~~~~~~~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wGlf~~~~~~Ky~l 334 (336)
++..+.+ .|. ...+++..+.|. .|..+ .+-|||+.|++||-.+
T Consensus 208 ~l~~~~~----~p~-v~gi~~Wg~~d~~~W~~~----~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 208 VFKACLA----HPA-VTGVTVWGVTDKYSWLDG----GAPLLFDANYQPKPAY 251 (254)
T ss_pred HHHHHHc----CCC-eeEEEEeCCccCCcccCC----CCceeECCCCCCChhh
Confidence 9988743 222 355666666653 45432 4679999999999754
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.59 E-value=0.0043 Score=57.65 Aligned_cols=189 Identities=12% Similarity=0.151 Sum_probs=105.3
Q ss_pred CeEEEeecCCcCcCCCCHHHHHHHHHHhhhhcCCCceEEEEEecccccCC---CcchHHHHHHHHHHHHHHHhcCCCCCe
Q 048190 73 IELMLGVANGDIQALSDPSAASSWVQNNILAFTPDVVFRYIAVGNEISPS---DQAASFVLPAMQNIYNAIVSANLQDQI 149 (336)
Q Consensus 73 ikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~---~~s~~~L~~~i~~vk~~L~~~g~~~~i 149 (336)
++-+-.+|.....+ ..|++. +... ...++.|..=||+=.. ..++++.+...++..+.|+.. .+
T Consensus 39 ~efvPmlwg~~~~~-------~~~~~~-v~~~--~~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~~----~~ 104 (239)
T PF11790_consen 39 LEFVPMLWGPGSDD-------DDWLAN-VQNA--HPGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRSP----GV 104 (239)
T ss_pred eeEeecccCCCCCc-------hHHHHH-HHhh--ccCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhcC----Cc
Confidence 67777777643222 122222 2221 2567888888997553 557888888888887777753 46
Q ss_pred eEEeeeeccccccccCCCCccccccccccchhhHHHhh--hcCCcceeecCCCccccCCCCcccccccccccCCccccCC
Q 048190 150 KVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLK--QTGAPLLANVYPYFSYIGDTKDIRLDYALFTSQGTPVQDG 227 (336)
Q Consensus 150 ~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~--~~~~~~~vN~yPff~~~~~p~~~~~~~a~f~~~~~~~~d~ 227 (336)
++..+-.-.. ...+|+...| +.+.++-+. ...|++.||.| .. +
T Consensus 105 ~l~sPa~~~~--~~~~~~g~~W-------l~~F~~~~~~~~~~D~iavH~Y---~~--~--------------------- 149 (239)
T PF11790_consen 105 KLGSPAVAFT--NGGTPGGLDW-------LSQFLSACARGCRVDFIAVHWY---GG--D--------------------- 149 (239)
T ss_pred EEECCeeccc--CCCCCCccHH-------HHHHHHhcccCCCccEEEEecC---Cc--C---------------------
Confidence 7765542100 0001111112 222222111 13344455554 10 0
Q ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCccEEEeccccCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEee
Q 048190 228 SLGYQNLFDASLDALYSALEKAGVPDLEVVVSETGWPSEGGEAATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMF 307 (336)
Q Consensus 228 ~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~Feaf 307 (336)
++...+.+....++. +|||+|||.|+.. +...++.++++.|++..+.++.+ ++. --+++||...
T Consensus 150 -------~~~~~~~i~~~~~~~---~kPIWITEf~~~~-~~~~~~~~~~~~fl~~~~~~ld~----~~~-VeryawF~~~ 213 (239)
T PF11790_consen 150 -------ADDFKDYIDDLHNRY---GKPIWITEFGCWN-GGSQGSDEQQASFLRQALPWLDS----QPY-VERYAWFGFM 213 (239)
T ss_pred -------HHHHHHHHHHHHHHh---CCCEEEEeecccC-CCCCCCHHHHHHHHHHHHHHHhc----CCC-eeEEEecccc
Confidence 111222222223333 3999999999876 44478999999999999999953 233 5678898833
Q ss_pred cCCCCCCCCCCCceeeecCCCce
Q 048190 308 DENQKGPAETERHFGLFSPNKQS 330 (336)
Q Consensus 308 De~wK~~~~~E~~wGlf~~~~~~ 330 (336)
++. ..+...-.|++.+|++
T Consensus 214 ~~~----~~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 214 NDG----SGVNPNSALLDADGSL 232 (239)
T ss_pred ccc----CCCccccccccCCCCc
Confidence 322 2355666788878754
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.13 E-value=0.029 Score=53.38 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=54.7
Q ss_pred CeeeEecCCCCC---CCChHHH---HHHHHhCCCCEEEEcc--CChhHHHHHhcCCCeEEEeecCCcC---cC------C
Q 048190 25 PIGVCYGRVANN---LPSDQEV---VDLYHANGITKMRIYD--PNEPTLQALRGSNIELMLGVANGDI---QA------L 87 (336)
Q Consensus 25 ~~Gi~Y~~~~~~---~~s~~~v---~~~l~~~~~~~VRlY~--~d~~vl~A~~~~gikv~lGv~~~~~---~~------~ 87 (336)
..|+|+...... .++++.+ ++++|..|++.||+.. .++..+.+|.+.||-|+.-++.... .. .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 358998864322 2345444 4567889999999964 3578999999999999988766210 00 0
Q ss_pred C-CH---HHHHHHHHHhhhhcCCCceEEEEEecccc
Q 048190 88 S-DP---SAASSWVQNNILAFTPDVVFRYIAVGNEI 119 (336)
Q Consensus 88 a-~~---~~a~~wv~~~v~~~~~~~~i~~I~VGNE~ 119 (336)
. ++ +.+.+-+++.|..+...-.|..=++|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 1 11 23334455556655433457788899998
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=95.71 E-value=2.2 Score=43.05 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCCEEEEcc------------CC-------hhHHHHHhcCCCeEEEeecCCcCcC-------CCCHH---
Q 048190 41 QEVVDLYHANGITKMRIYD------------PN-------EPTLQALRGSNIELMLGVANGDIQA-------LSDPS--- 91 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~------------~d-------~~vl~A~~~~gikv~lGv~~~~~~~-------~a~~~--- 91 (336)
++.+++++..|++++|+=- .| .+++..+.+.||++++.+..-++|. ..+++
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~~ 136 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTAE 136 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHHH
Confidence 6778889999999988621 12 2688999999999999997655442 11332
Q ss_pred HHHHHHHHhhhhcCCCceEEEEEeccccc
Q 048190 92 AASSWVQNNILAFTPDVVFRYIAVGNEIS 120 (336)
Q Consensus 92 ~a~~wv~~~v~~~~~~~~i~~I~VGNE~l 120 (336)
.-.+..+.-...| + +.|+..+.=||..
T Consensus 137 ~f~~ya~~~~~~~-~-d~v~~w~t~NEp~ 163 (427)
T TIGR03356 137 WFAEYAAVVAERL-G-DRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHh-C-CcCCEEEEecCcc
Confidence 2222222223344 3 4666666667764
No 12
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.54 E-value=6 Score=44.44 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=57.3
Q ss_pred eeeEecCCCC---CCCChHHH---HHHHHhCCCCEEEEccC--ChhHHHHHhcCCCeEEEeecCCcC--------cCCC-
Q 048190 26 IGVCYGRVAN---NLPSDQEV---VDLYHANGITKMRIYDP--NEPTLQALRGSNIELMLGVANGDI--------QALS- 88 (336)
Q Consensus 26 ~Gi~Y~~~~~---~~~s~~~v---~~~l~~~~~~~VRlY~~--d~~vl~A~~~~gikv~lGv~~~~~--------~~~a- 88 (336)
.|+|+-.... ...+++++ ++++|+.|++.||+-.. ++..+.+|.+.||-|+--+....- ....
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 4777543311 12345444 55778899999999542 467899999999998875532210 0111
Q ss_pred CH---HHHHHHHHHhhhhcCCCceEEEEEecccccC
Q 048190 89 DP---SAASSWVQNNILAFTPDVVFRYIAVGNEISP 121 (336)
Q Consensus 89 ~~---~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~ 121 (336)
++ ++..+-+++.|..+...-.|..=++|||.-.
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 21 1222334555555544456778889999754
No 13
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=90.70 E-value=0.11 Score=52.89 Aligned_cols=279 Identities=17% Similarity=0.182 Sum_probs=136.3
Q ss_pred HHHHHHHHhCCCCEEEEc--------c-----CC-------hhHHHHHhcCCCeEEEeecCCcCcCC----C---CHHHH
Q 048190 41 QEVVDLYHANGITKMRIY--------D-----PN-------EPTLQALRGSNIELMLGVANGDIQAL----S---DPSAA 93 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY--------~-----~d-------~~vl~A~~~~gikv~lGv~~~~~~~~----a---~~~~a 93 (336)
++.++++++.|++..|+= + .| .+++..+.+.||+.++.+..-++|.. . +++.+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 678889999999988874 1 12 16899999999999999998765531 1 22222
Q ss_pred ---HHHHHHhhhhcCCCceEEEEEecccccCC-------C------cc-------hHHHHHHHHHHHHHHHhcCCCCCee
Q 048190 94 ---SSWVQNNILAFTPDVVFRYIAVGNEISPS-------D------QA-------ASFVLPAMQNIYNAIVSANLQDQIK 150 (336)
Q Consensus 94 ---~~wv~~~v~~~~~~~~i~~I~VGNE~l~~-------~------~s-------~~~L~~~i~~vk~~L~~~g~~~~i~ 150 (336)
.+..+.-+..| + +.|+.-+.=||...- . .+ ...++-+-..+.+.+++.+- +.+
T Consensus 141 ~~F~~Ya~~~~~~~-g-d~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~~ 216 (455)
T PF00232_consen 141 DWFARYAEFVFERF-G-DRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DGK 216 (455)
T ss_dssp HHHHHHHHHHHHHH-T-TTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TSE
T ss_pred HHHHHHHHHHHHHh-C-CCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ceE
Confidence 12222223344 2 678888888886431 0 01 22344444455555666553 456
Q ss_pred EEeeeeccccc-c-ccCCCC---------------------ccccccc---------cccch-hhHHHhhhcCCcceeec
Q 048190 151 VSTAIQTSLLG-N-SYPPSA---------------------GSFADDA---------NSYIG-PIVQFLKQTGAPLLANV 197 (336)
Q Consensus 151 Vtta~~~~~~~-~-~~pPS~---------------------~~f~~~~---------~~~l~-~~vdfl~~~~~~~~vN~ 197 (336)
|+.+....... . ..|+.. |.|.... .+.+. .-...|..+.|++++|-
T Consensus 217 IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNY 296 (455)
T PF00232_consen 217 IGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINY 296 (455)
T ss_dssp EEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEE
T ss_pred EeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhcc
Confidence 77766554221 0 001110 1110000 00011 11233467899999999
Q ss_pred CCCccccCCCC-ccccccc---cccc---CCccccCCCCcchhhHHHHHHHHHHHHHHhCCCCccEEEeccccCCCCCC-
Q 048190 198 YPYFSYIGDTK-DIRLDYA---LFTS---QGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSETGWPSEGGE- 269 (336)
Q Consensus 198 yPff~~~~~p~-~~~~~~a---~f~~---~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~- 269 (336)
|.=---...|. .....+. .+.. ......+-+..+. =..+.+.+...-++ ++++||+|+|.|++...+.
T Consensus 297 Yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~--P~Gl~~~L~~l~~~--Y~~~pI~ITENG~~~~~~~~ 372 (455)
T PF00232_consen 297 YTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIY--PEGLRDVLRYLKDR--YGNPPIYITENGIGDPDEVD 372 (455)
T ss_dssp SEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBE--THHHHHHHHHHHHH--HTSSEEEEEEE---EETTCT
T ss_pred ccceeeccCccccccccccCCccccccccccccccccCcccc--cchHhhhhhhhccc--cCCCcEEEeccccccccccc
Confidence 86544333321 1111111 1110 0011122222111 11233333322222 4569999999999977652
Q ss_pred ------CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCCCCCCCceeeecCC------Cceeee
Q 048190 270 ------AATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFGLFSPN------KQSKYE 333 (336)
Q Consensus 270 ------~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~~~~E~~wGlf~~~------~~~Ky~ 333 (336)
..-...-+.++..+.+.+.+|.+ -..||..++.|- +--..+..+.|||++-| |+||-+
T Consensus 373 ~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~-----V~GY~~WSl~Dn-~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S 442 (455)
T PF00232_consen 373 DGKVDDDYRIDYLQDHLNQVLKAIEDGVN-----VRGYFAWSLLDN-FEWAEGYKKRFGLVYVDFFDTLKRTPKKS 442 (455)
T ss_dssp TSHBSHHHHHHHHHHHHHHHHHHHHTT-E-----EEEEEEETSB----BGGGGGGSE--SEEEETTTTTEEEEBHH
T ss_pred ccCcCcHHHHHHHHHHHHHHHhhhccCCC-----eeeEeeeccccc-cccccCccCccCceEEcCCCCcCeeeccH
Confidence 12223345566666666655543 345677777773 33223588999999999 888854
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=85.04 E-value=6.8 Score=38.55 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCCEEEEccCC----------------hhHHHHHhcCCCeEEEeecCCcCc--------C----------
Q 048190 41 QEVVDLYHANGITKMRIYDPN----------------EPTLQALRGSNIELMLGVANGDIQ--------A---------- 86 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~~d----------------~~vl~A~~~~gikv~lGv~~~~~~--------~---------- 86 (336)
++.+++++..|++.||+-... ..+|..+++.||+|+|+++....+ .
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 566778888999999974321 268888899999999999744211 0
Q ss_pred ----------CCC---HHHHHHHHHHhhhhcCCCceEEEEEecccccC
Q 048190 87 ----------LSD---PSAASSWVQNNILAFTPDVVFRYIAVGNEISP 121 (336)
Q Consensus 87 ----------~a~---~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~ 121 (336)
+.+ .+.+.+.++.-...|.....|.++-|.||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 011 12445555555556655567899999999765
No 15
>PRK09936 hypothetical protein; Provisional
Probab=83.76 E-value=5.2 Score=38.33 Aligned_cols=59 Identities=15% Similarity=0.284 Sum_probs=43.2
Q ss_pred CeeeEecCCCCC-CCChHHHHH---HHHhCCCCEEEEc-----cCC--------hhHHHHHhcCCCeEEEeecCCc
Q 048190 25 PIGVCYGRVANN-LPSDQEVVD---LYHANGITKMRIY-----DPN--------EPTLQALRGSNIELMLGVANGD 83 (336)
Q Consensus 25 ~~Gi~Y~~~~~~-~~s~~~v~~---~l~~~~~~~VRlY-----~~d--------~~vl~A~~~~gikv~lGv~~~~ 83 (336)
..|+=|.|...+ -.++++-.+ .++..|++.+=+- ++| .+.++++.+.||+|.+|++.+.
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 568889999776 356655544 5567888776553 223 2688888999999999999863
No 16
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=81.02 E-value=4.2 Score=41.59 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=103.5
Q ss_pred HHHHHHhhhhcCCCceEEEEEecccccCC-CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCcccc
Q 048190 94 SSWVQNNILAFTPDVVFRYIAVGNEISPS-DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFA 172 (336)
Q Consensus 94 ~~wv~~~v~~~~~~~~i~~I~VGNE~l~~-~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~ 172 (336)
+..+..-|.+|.-...|.+-..-||.|.+ +.+++.+......+.+.|+..+-+--|.|+-. ..-|...-||+
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~--~sp~~~~~pyN----- 195 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDP--ASPWPQYAPYN----- 195 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCc--CCcccccCCcc-----
Confidence 45677777788656678888899998886 88999999999999999998874322444332 22233322332
Q ss_pred ccccccchhhHHHhhhcCCcceeecCCCccccCCCCcccccccccccCCccccCCCCcchhhHHHHHHHHHHHHHHhCCC
Q 048190 173 DDANSYIGPIVQFLKQTGAPLLANVYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVP 252 (336)
Q Consensus 173 ~~~~~~l~~~vdfl~~~~~~~~vN~yPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~ 252 (336)
.+..+|| -.-|+||+|+. +| .....+..+ ...+| .-..+ +
T Consensus 196 ------~r~~vDy-------a~~hLY~hyd~--sl-~~r~s~~yg------------------~~~l~----i~~~~--g 235 (587)
T COG3934 196 ------ARFYVDY-------AANHLYRHYDT--SL-VSRVSTVYG------------------KPYLD----IPTIM--G 235 (587)
T ss_pred ------cceeecc-------ccchhhhhccC--Ch-hheeeeeec------------------chhhc----cchhc--c
Confidence 2223444 67899998873 33 111111110 00111 01111 2
Q ss_pred CccEEEeccccCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCC------CCCCCceeeecC
Q 048190 253 DLEVVVSETGWPSEGGEAATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGP------AETERHFGLFSP 326 (336)
Q Consensus 253 ~~~v~I~ETGWPs~G~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~------~~~E~~wGlf~~ 326 (336)
-+||+.-|-|-|++ ...+|...|+-.....+.-| +-+--+.-|+-|-+ -+. .-.|-.|||.+.
T Consensus 236 ~~pV~leefGfsta----~g~e~s~ayfiw~~lal~~g-----gdGaLiwclsdf~~--gsdd~ey~w~p~el~fgiIra 304 (587)
T COG3934 236 WQPVNLEEFGFSTA----FGQENSPAYFIWIRLALDTG-----GDGALIWCLSDFHL--GSDDSEYTWGPMELEFGIIRA 304 (587)
T ss_pred cceeeccccCCccc----ccccccchhhhhhhhHHhhc-----CCceEEEEecCCcc--CCCCCCCccccccceeeeecC
Confidence 37999999999988 33344444433333322110 11222222332221 111 136778999999
Q ss_pred CCceeeeC
Q 048190 327 NKQSKYEL 334 (336)
Q Consensus 327 ~~~~Ky~l 334 (336)
|+.+|+..
T Consensus 305 dgpek~~a 312 (587)
T COG3934 305 DGPEKIDA 312 (587)
T ss_pred CCchhhhH
Confidence 99999853
No 17
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=80.62 E-value=8.6 Score=37.84 Aligned_cols=93 Identities=14% Similarity=0.237 Sum_probs=57.1
Q ss_pred CCCEEEEccC-ChhHHHHHhcCCCeEEEeecCCcCcCCCCHHHHHHHHHHhhhhcCCCceEEEEEecccccCC--CcchH
Q 048190 51 GITKMRIYDP-NEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILAFTPDVVFRYIAVGNEISPS--DQAAS 127 (336)
Q Consensus 51 ~~~~VRlY~~-d~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~--~~s~~ 127 (336)
.+++|-+|+. +++++..+.+.|++|++..-.. .+.+.++..-.++++..+. +.....+++|-+==|-... ....+
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~siv~-~~~~~gfDGIdIDwE~p~~~~~~d~~ 132 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQKVE-LAKSQFMDGINIDIEQPITKGSPEYY 132 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHHHHH-HHHHhCCCeEEEcccCCCCCCcchHH
Confidence 4678888864 7899999999999999864322 2233444433344444322 2222245566554443321 12246
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 048190 128 FVLPAMQNIYNAIVSANL 145 (336)
Q Consensus 128 ~L~~~i~~vk~~L~~~g~ 145 (336)
.+..-|+++|++|++.|.
T Consensus 133 ~~t~llkelr~~l~~~~~ 150 (358)
T cd02875 133 ALTELVKETTKAFKKENP 150 (358)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 788999999999998764
No 18
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=77.80 E-value=8.3 Score=39.46 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCCEEEE-------c--c---CC-------hhHHHHHhcCCCeEEEeecCCcCcC
Q 048190 41 QEVVDLYHANGITKMRI-------Y--D---PN-------EPTLQALRGSNIELMLGVANGDIQA 86 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRl-------Y--~---~d-------~~vl~A~~~~gikv~lGv~~~~~~~ 86 (336)
++.+++++..|++.-|+ + + .| .+++.++.+.||+-++.+..-++|.
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 77889999988877765 2 1 12 2699999999999999999876553
No 19
>PLN02998 beta-glucosidase
Probab=73.64 E-value=10 Score=39.14 Aligned_cols=72 Identities=24% Similarity=0.353 Sum_probs=45.4
Q ss_pred CCCccEEEeccccCCCCCC----CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecC-CCCCCCCCCCceeeec
Q 048190 251 VPDLEVVVSETGWPSEGGE----AATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFGLFS 325 (336)
Q Consensus 251 ~~~~~v~I~ETGWPs~G~~----~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wGlf~ 325 (336)
+.+.||+|+|-|+....+. .-=...-+.+++.+.+.+.+|.+ -..||.-++.|- .|.. +..+.|||+.
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~-----V~GY~~WSl~DnfEW~~--Gy~~RfGLv~ 462 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSD-----VKGYFQWSLMDVFELFG--GYERSFGLLY 462 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchhhhchhc--cccCccceEE
Confidence 3445899999999875321 12233445566666666666543 244777777772 3433 5889999998
Q ss_pred CCCc
Q 048190 326 PNKQ 329 (336)
Q Consensus 326 ~~~~ 329 (336)
-|.+
T Consensus 463 VD~~ 466 (497)
T PLN02998 463 VDFK 466 (497)
T ss_pred ECCC
Confidence 8754
No 20
>PLN02814 beta-glucosidase
Probab=73.08 E-value=11 Score=39.10 Aligned_cols=72 Identities=19% Similarity=0.363 Sum_probs=45.0
Q ss_pred CCCccEEEeccccCCCCCC----CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecC-CCCCCCCCCCceeeec
Q 048190 251 VPDLEVVVSETGWPSEGGE----AATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFGLFS 325 (336)
Q Consensus 251 ~~~~~v~I~ETGWPs~G~~----~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wGlf~ 325 (336)
+.+.||+|+|-|++...+. .-=...-+.+++.+.+.+..|.+ -..||.-++.|- .|.. +..+.|||+.
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~-----V~GY~~WSllDnfEW~~--Gy~~RfGLvy 457 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSD-----TRGYFVWSMIDLYELLG--GYTTSFGMYY 457 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchhhhchhc--cccCccceEE
Confidence 4455899999999755322 12223445555555555556544 234777777772 3433 5899999998
Q ss_pred CCCc
Q 048190 326 PNKQ 329 (336)
Q Consensus 326 ~~~~ 329 (336)
-|++
T Consensus 458 VD~~ 461 (504)
T PLN02814 458 VNFS 461 (504)
T ss_pred ECCC
Confidence 8754
No 21
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=72.09 E-value=39 Score=33.14 Aligned_cols=56 Identities=16% Similarity=0.040 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcCCcceeecCCC
Q 048190 125 AASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPY 200 (336)
Q Consensus 125 s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPf 200 (336)
..+.+..+++..++.|++.. .+.||+|-.... +.. + + +... +.+..|++..|.||.
T Consensus 207 ~~~~~~~~~~~~~~~ir~~~--p~~~vt~n~~~~-~~~-----------~----~-d~~~-~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 207 QSDRVAEFFRWQADIIREYD--PDHPVTTNFMGS-WFN-----------G----I-DYFK-WAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--TT-EEE-EE-TT---------------S----S--HHH-HGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCceEEeCcccc-ccC-----------c----C-CHHH-HHhhCCcceeccccC
Confidence 36778889999999999986 357898754221 000 0 0 1111 345678899999999
No 22
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.89 E-value=50 Score=33.63 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcCCcceeecCCCc
Q 048190 122 SDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYF 201 (336)
Q Consensus 122 ~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff 201 (336)
|.++.++.+..++.+|+.+.. +-++|..-. .|| .+-.....+.+||+ +..-+=.+|+++|=
T Consensus 275 R~yt~e~~~~~i~k~R~~~Pd------~~i~tDiIV-----GFP-------gETeedFe~tl~lv-~e~~fd~~~~F~YS 335 (437)
T COG0621 275 RGYTVEEYLEIIEKLRAARPD------IAISTDIIV-----GFP-------GETEEDFEETLDLV-EEVRFDRLHVFKYS 335 (437)
T ss_pred CCcCHHHHHHHHHHHHHhCCC------ceEeccEEE-----ECC-------CCCHHHHHHHHHHH-HHhCCCEEeeeecC
Confidence 367889999999999999854 445543322 232 11123345667765 45566789999985
Q ss_pred cc
Q 048190 202 SY 203 (336)
Q Consensus 202 ~~ 203 (336)
..
T Consensus 336 pR 337 (437)
T COG0621 336 PR 337 (437)
T ss_pred CC
Confidence 54
No 23
>PLN02849 beta-glucosidase
Probab=69.31 E-value=15 Score=38.01 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=44.9
Q ss_pred CCCccEEEeccccCCCCCC------CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCCCCCCCceeee
Q 048190 251 VPDLEVVVSETGWPSEGGE------AATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGPAETERHFGLF 324 (336)
Q Consensus 251 ~~~~~v~I~ETGWPs~G~~------~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~~~~E~~wGlf 324 (336)
+.+.||+|+|-|++..... .-=...-+.+++.+.+.+.+|.+ -..||.-++.|- |--..+.++.|||+
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~-----V~GY~~WSl~Dn-fEW~~Gy~~RfGLi 456 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSD-----TRGYFVWSFMDL-YELLKGYEFSFGLY 456 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchhh-hchhccccCccceE
Confidence 4445899999999865421 11233445555555555556543 234677777763 32223589999999
Q ss_pred cCCCc
Q 048190 325 SPNKQ 329 (336)
Q Consensus 325 ~~~~~ 329 (336)
.-|.+
T Consensus 457 ~VD~~ 461 (503)
T PLN02849 457 SVNFS 461 (503)
T ss_pred EECCC
Confidence 88754
No 24
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=62.79 E-value=1.1e+02 Score=29.49 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCC--CCcc--ccccccccchhhHHHhhhcCCcceeecCCC
Q 048190 125 AASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPP--SAGS--FADDANSYIGPIVQFLKQTGAPLLANVYPY 200 (336)
Q Consensus 125 s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pP--S~~~--f~~~~~~~l~~~vdfl~~~~~~~~vN~yPf 200 (336)
+.+++...++++|+. +||+..-..-.-|.....+ .-|. |..+.-|...++++-|.+.+=-++++++|+
T Consensus 22 ~~~~v~~~~~~~~~~--------~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 22 NWQEVDDTIKTLREK--------DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CHHHHHHHHHHHHHh--------CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 467777777777766 4677654322122110000 0111 222223567789999999999999999999
Q ss_pred ccc
Q 048190 201 FSY 203 (336)
Q Consensus 201 f~~ 203 (336)
...
T Consensus 94 v~~ 96 (317)
T cd06598 94 VLK 96 (317)
T ss_pred ccC
Confidence 873
No 25
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=60.17 E-value=1.5e+02 Score=30.43 Aligned_cols=241 Identities=15% Similarity=0.191 Sum_probs=112.0
Q ss_pred HhCCCCEEEEccC--C---------------------hhHHHHHhcCCCeEEEeecC--CcCcC-----C---------C
Q 048190 48 HANGITKMRIYDP--N---------------------EPTLQALRGSNIELMLGVAN--GDIQA-----L---------S 88 (336)
Q Consensus 48 ~~~~~~~VRlY~~--d---------------------~~vl~A~~~~gikv~lGv~~--~~~~~-----~---------a 88 (336)
+..||+.||+-.. | ..++..+.+.||+-++-+.- ..+.+ + .
T Consensus 50 ~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~~pp~ 129 (486)
T PF01229_consen 50 EELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNISPPK 129 (486)
T ss_dssp CCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-S-BS
T ss_pred hccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCcCCcc
Confidence 3578999998632 1 25888888999997665542 11110 0 0
Q ss_pred CHHH----HHHHHHHhhhhcCCCceEE--EEEecccccCC----CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeee-ec
Q 048190 89 DPSA----ASSWVQNNILAFTPDVVFR--YIAVGNEISPS----DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAI-QT 157 (336)
Q Consensus 89 ~~~~----a~~wv~~~v~~~~~~~~i~--~I~VGNE~l~~----~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~-~~ 157 (336)
+.+. ..++++.-+..| +...|+ ..=|=||+=.. ..+..+-....+.+..+|++.. ..++|+-+- .+
T Consensus 130 ~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~~~~ 206 (486)
T PF01229_consen 130 DYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPAFAW 206 (486)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEEEET
T ss_pred cHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCccccc
Confidence 2222 223333333333 111121 34578996432 2345677788888888888875 468888761 11
Q ss_pred cccccccCCCCccccccccccchhhHHHhhh---cCCcceeecCCCccccCCCCcccccccccccCCccccCCCCcchhh
Q 048190 158 SLLGNSYPPSAGSFADDANSYIGPIVQFLKQ---TGAPLLANVYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNL 234 (336)
Q Consensus 158 ~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~---~~~~~~vN~yPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~ 234 (336)
.. ...+...++|+.+ .-|++..|.||+-......+. ... .. .....+
T Consensus 207 ~~----------------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~---~~~-------~~----~~~~~~ 256 (486)
T PF01229_consen 207 AY----------------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINEN---MYE-------RI----EDSRRL 256 (486)
T ss_dssp T-----------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS----EEE-------EB------HHHH
T ss_pred cH----------------HHHHHHHHHHHhcCCCCCCEEEEEecccccccccchh---HHh-------hh----hhHHHH
Confidence 00 1234556666654 346678888886432111100 000 00 001112
Q ss_pred HHHHHHHHHHHHHHhCCCCccEEEeccccCCCCCC----CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEE----e
Q 048190 235 FDASLDALYSALEKAGVPDLEVVVSETGWPSEGGE----AATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFA----M 306 (336)
Q Consensus 235 ~da~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~----~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~Fe----a 306 (336)
++...+ +...+...+.+++|+.++| |.+.-.. .-|.-++....++++...+. .++.|-+= .
T Consensus 257 ~~~~~~-~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~--------~l~~~sywt~sD~ 325 (486)
T PF01229_consen 257 FPELKE-TRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA--------FLDSFSYWTFSDR 325 (486)
T ss_dssp HHHHHH-HHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG--------T-SEEEES-SBS-
T ss_pred HHHHHH-HHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh--------hhhhhhccchhhh
Confidence 222212 2223344467889999999 8877554 45666666666666666531 23332221 2
Q ss_pred ecCCCCCCCCCCCceeeecCCCceee
Q 048190 307 FDENQKGPAETERHFGLFSPNKQSKY 332 (336)
Q Consensus 307 fDe~wK~~~~~E~~wGlf~~~~~~Ky 332 (336)
|.|.-.+..-+-..|||+..+|-+|-
T Consensus 326 Fee~~~~~~pf~ggfGLlt~~gI~KP 351 (486)
T PF01229_consen 326 FEENGTPRKPFHGGFGLLTKLGIPKP 351 (486)
T ss_dssp --TTSS-SSSSSS-S-SEECCCEE-H
T ss_pred hhccCCCCCceecchhhhhccCCCch
Confidence 33332222246677999999987773
No 26
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=58.37 E-value=24 Score=31.06 Aligned_cols=81 Identities=15% Similarity=0.327 Sum_probs=43.8
Q ss_pred HHHHHhc--CCCeEEEeecCCcCcC---CC-CHHHHHHHHHHhhhhcCCCceEEEEEecccccCCCc--chHHHHHHHHH
Q 048190 64 TLQALRG--SNIELMLGVANGDIQA---LS-DPSAASSWVQNNILAFTPDVVFRYIAVGNEISPSDQ--AASFVLPAMQN 135 (336)
Q Consensus 64 vl~A~~~--~gikv~lGv~~~~~~~---~a-~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~--s~~~L~~~i~~ 135 (336)
-++.+++ .|+||++.+....... +. +.....+.+ +++..+.....+++|-+==|-..... ....++..|+.
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~-~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~ 132 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFA-NSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRE 132 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHH-HHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHH
Confidence 3455555 4999999998653222 22 433322222 22222221224555554334332211 25789999999
Q ss_pred HHHHHHhcCC
Q 048190 136 IYNAIVSANL 145 (336)
Q Consensus 136 vk~~L~~~g~ 145 (336)
+|+.+.+.++
T Consensus 133 lr~~l~~~~~ 142 (210)
T cd00598 133 LRSALGAANY 142 (210)
T ss_pred HHHHhcccCc
Confidence 9999977654
No 27
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=57.13 E-value=36 Score=31.46 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=44.3
Q ss_pred hHHHHHhcCCCeEEEeecCCcCcC---CC-CHHHHHHHHHHhhhhcCCCceEEEEEecccccCCCcchHHHHHHHHHHHH
Q 048190 63 PTLQALRGSNIELMLGVANGDIQA---LS-DPSAASSWVQNNILAFTPDVVFRYIAVGNEISPSDQAASFVLPAMQNIYN 138 (336)
Q Consensus 63 ~vl~A~~~~gikv~lGv~~~~~~~---~a-~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~s~~~L~~~i~~vk~ 138 (336)
..++++++.|+||++.|....... +. +.....++++. +..+.....+.+|-+==|-.... .+.+..-++++|+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~ 126 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYA 126 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHH
Confidence 456677778999999887643221 22 43333333332 22222112344554444433211 3567888999999
Q ss_pred HHHhcCC
Q 048190 139 AIVSANL 145 (336)
Q Consensus 139 ~L~~~g~ 145 (336)
+|++.|+
T Consensus 127 ~l~~~~~ 133 (253)
T cd06545 127 ALKKEGK 133 (253)
T ss_pred HHhhcCc
Confidence 9987664
No 28
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=56.60 E-value=75 Score=35.94 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=57.9
Q ss_pred eeeEecCCCC---CCCChHHH---HHHHHhCCCCEEEEcc--CChhHHHHHhcCCCeEEEeecCCcC-----cCCC-CH-
Q 048190 26 IGVCYGRVAN---NLPSDQEV---VDLYHANGITKMRIYD--PNEPTLQALRGSNIELMLGVANGDI-----QALS-DP- 90 (336)
Q Consensus 26 ~Gi~Y~~~~~---~~~s~~~v---~~~l~~~~~~~VRlY~--~d~~vl~A~~~~gikv~lGv~~~~~-----~~~a-~~- 90 (336)
.|+|+-.... ...+++++ ++++|..|++.||+-. -++..+..|.+.||-|+--++...- ..+. ++
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 4777653311 12455554 4567889999999943 2578999999999998877654210 1111 22
Q ss_pred --HHHHHHHHHhhhhcCCCceEEEEEecccccC
Q 048190 91 --SAASSWVQNNILAFTPDVVFRYIAVGNEISP 121 (336)
Q Consensus 91 --~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~ 121 (336)
++..+-+++.|......-.|..=++|||.-.
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESGH 465 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCc
Confidence 1222234444555544456878899999643
No 29
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=56.45 E-value=1.1e+02 Score=30.52 Aligned_cols=137 Identities=10% Similarity=0.176 Sum_probs=71.8
Q ss_pred CChHHHHHHHH---hCCCCEEEEccC-------C-------hhHHHHHhcC-CCe-EEEeecCCcCcCCCCHHHHHHHHH
Q 048190 38 PSDQEVVDLYH---ANGITKMRIYDP-------N-------EPTLQALRGS-NIE-LMLGVANGDIQALSDPSAASSWVQ 98 (336)
Q Consensus 38 ~s~~~v~~~l~---~~~~~~VRlY~~-------d-------~~vl~A~~~~-gik-v~lGv~~~~~~~~a~~~~a~~wv~ 98 (336)
-++++|++.++ ..|++.|.+.+. | ..+++++.+. |++ +-++-- ....+ +.+. .+.++
T Consensus 167 r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~--~p~~~-~~el-l~~m~ 242 (414)
T TIGR01579 167 VPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSI--DPEDI-DEEL-LEAIA 242 (414)
T ss_pred CCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCC--ChhhC-CHHH-HHHHH
Confidence 36678876444 468999987542 2 1566666543 443 333311 11112 2222 23343
Q ss_pred HhhhhcCCCceEEEEEecccccC--------CCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCcc
Q 048190 99 NNILAFTPDVVFRYIAVGNEISP--------SDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGS 170 (336)
Q Consensus 99 ~~v~~~~~~~~i~~I~VGNE~l~--------~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~ 170 (336)
++ + .....+.+|=|-.. +..+.++...+++.+|+.. . .+.+++..-.+ +|
T Consensus 243 ~~-----~-~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~----gi~i~~~~IvG-----~P----- 300 (414)
T TIGR01579 243 SE-----K-RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--P----DYAFGTDIIVG-----FP----- 300 (414)
T ss_pred hc-----C-ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--C----CCeeeeeEEEE-----CC-----
Confidence 31 1 11235566655432 1456788888888888753 1 25566544322 22
Q ss_pred ccccccccchhhHHHhhhcCCcceeecCCCccc
Q 048190 171 FADDANSYIGPIVQFLKQTGAPLLANVYPYFSY 203 (336)
Q Consensus 171 f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~~ 203 (336)
.+-...+.+.++|+.+. .+-.+++|||--.
T Consensus 301 --gET~ed~~~tl~~i~~~-~~~~~~~~~~sp~ 330 (414)
T TIGR01579 301 --GESEEDFQETLRMVKEI-EFSHLHIFPYSAR 330 (414)
T ss_pred --CCCHHHHHHHHHHHHhC-CCCEEEeeecCCC
Confidence 11235577788998654 3556788887554
No 30
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=55.96 E-value=1.5e+02 Score=30.12 Aligned_cols=136 Identities=14% Similarity=0.232 Sum_probs=72.5
Q ss_pred ChHHHHHHH---HhCCCCEEEEccCC-----------hhHHHHHhcC-CC-eEEEeecCCcCcCCCCHHHHHHHHHHhhh
Q 048190 39 SDQEVVDLY---HANGITKMRIYDPN-----------EPTLQALRGS-NI-ELMLGVANGDIQALSDPSAASSWVQNNIL 102 (336)
Q Consensus 39 s~~~v~~~l---~~~~~~~VRlY~~d-----------~~vl~A~~~~-gi-kv~lGv~~~~~~~~a~~~~a~~wv~~~v~ 102 (336)
++++|++.+ ...|++.|.+.+-| ...|.++.+. ++ .+-++..+ ...+ +.+ ..+.+++.
T Consensus 184 ~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~-~~e-ll~~m~~~-- 257 (449)
T PRK14332 184 DPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPH--PKDF-PDH-LLSLMAKN-- 257 (449)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCC--cccC-CHH-HHHHHHhC--
Confidence 567776544 34689999888654 2345554332 32 22222221 1122 222 22333331
Q ss_pred hcCCCceEEEEEec-----ccccCC---CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCcccccc
Q 048190 103 AFTPDVVFRYIAVG-----NEISPS---DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADD 174 (336)
Q Consensus 103 ~~~~~~~i~~I~VG-----NE~l~~---~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~ 174 (336)
+ .....+.+| +++|-. ..+.++...+++.+|++.. .+.++|..-. .|| .+
T Consensus 258 ---~-~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td~Iv-----GfP-------gE 315 (449)
T PRK14332 258 ---P-RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTDIIV-----GFP-------NE 315 (449)
T ss_pred ---C-CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEEEEe-----eCC-------CC
Confidence 2 134577777 334322 5678899999999998742 3556554322 232 12
Q ss_pred ccccchhhHHHhhhcCCcceeecCCCccc
Q 048190 175 ANSYIGPIVQFLKQTGAPLLANVYPYFSY 203 (336)
Q Consensus 175 ~~~~l~~~vdfl~~~~~~~~vN~yPff~~ 203 (336)
-...+...++|+.+ ..+-.+++|+|--.
T Consensus 316 T~edf~~tl~~v~~-l~~~~~~~f~ys~~ 343 (449)
T PRK14332 316 TEEEFEDTLAVVRE-VQFDMAFMFKYSER 343 (449)
T ss_pred CHHHHHHHHHHHHh-CCCCEEEEEEecCC
Confidence 23556777888754 33446788887554
No 31
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=55.57 E-value=57 Score=31.00 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=48.1
Q ss_pred hhHHHHHhcCCCeEEEeecCCcC--------cCCC-CHHHHHHHHHHhhhhcCCCceEEEEEecccccCCCcchHHHHHH
Q 048190 62 EPTLQALRGSNIELMLGVANGDI--------QALS-DPSAASSWVQNNILAFTPDVVFRYIAVGNEISPSDQAASFVLPA 132 (336)
Q Consensus 62 ~~vl~A~~~~gikv~lGv~~~~~--------~~~a-~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~s~~~L~~~ 132 (336)
+.++.++++.++||++.|.+... ..+. ++..-.+.+ +++..+.....+.+|.+==|.+.. .....+..-
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~f 125 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVPP-EDREAYTQF 125 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHH
Confidence 57888888889999999976421 1122 332222222 223322211235566665565432 234568899
Q ss_pred HHHHHHHHHhcCC
Q 048190 133 MQNIYNAIVSANL 145 (336)
Q Consensus 133 i~~vk~~L~~~g~ 145 (336)
|+++|.+|++.|+
T Consensus 126 l~~lr~~l~~~~~ 138 (313)
T cd02874 126 LRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHhhhcCc
Confidence 9999999987764
No 32
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=55.30 E-value=12 Score=36.14 Aligned_cols=213 Identities=16% Similarity=0.192 Sum_probs=109.1
Q ss_pred hHHHHHhcCCCeEE--EeecCCcCcC----C-C-C-------HHHHHHHHHHhhhhcCCC-ceEEEEEecccccCCCc--
Q 048190 63 PTLQALRGSNIELM--LGVANGDIQA----L-S-D-------PSAASSWVQNNILAFTPD-VVFRYIAVGNEISPSDQ-- 124 (336)
Q Consensus 63 ~vl~A~~~~gikv~--lGv~~~~~~~----~-a-~-------~~~a~~wv~~~v~~~~~~-~~i~~I~VGNE~l~~~~-- 124 (336)
.++.-+.+.||+|- .=||....+. . . + .....++|++.+..| .. ..|...=|=||++..+.
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 57777788888865 4566654332 1 1 1 123345565555565 43 48989989999998521
Q ss_pred -----c-------hHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcCCc
Q 048190 125 -----A-------ASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAP 192 (336)
Q Consensus 125 -----s-------~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~ 192 (336)
+ ++.+..+.+..|++... ++.---| +.... + .-...+..+|+.|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND----y~~~~-~-------~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND----YNIES-P-------AKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE----SSTTS-T-------HHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc----ccccc-h-------HHHHHHHHHHHHHHhCCCc
Confidence 1 34555677777777642 3332211 11100 0 0123455677766554322
Q ss_pred ---ceeecCCCccccCCCCcccccccccccCCccccCCCCcchhhHHHHHHHHHHHHHHhCCCCccEEEeccccCCCCCC
Q 048190 193 ---LLANVYPYFSYIGDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSETGWPSEGGE 269 (336)
Q Consensus 193 ---~~vN~yPff~~~~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~ 269 (336)
+++..| |. . + +. .+.+...++++..-+++|.|||.-=......
T Consensus 204 IdgIG~Q~H--~~----------------------~--~--~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~ 249 (320)
T PF00331_consen 204 IDGIGLQSH--FD----------------------A--G--YP------PEQIWNALDRFASLGLPIHITELDVRDDDNP 249 (320)
T ss_dssp S-EEEEEEE--EE----------------------T--T--SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTT
T ss_pred cceechhhc--cC----------------------C--C--CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCC
Confidence 222222 11 0 0 01 2334445666555679999999864444332
Q ss_pred --CCCHHHHHHHHHHHHHhhcCCCCCCC-CCceeEEEEEeecCC-CCCCCCCCCceeeecCCCceeee
Q 048190 270 --AATVDNASTYYKNVINHVSAGTPKRP-GKVIETYLFAMFDEN-QKGPAETERHFGLFSPNKQSKYE 333 (336)
Q Consensus 270 --~as~~na~~y~~~~~~~~~~gtp~~~-~~~~~~~~FeafDe~-wK~~~~~E~~wGlf~~~~~~Ky~ 333 (336)
....+.|+.++++++..+.+ .| ..-..+.+..+.|.. |..... -.+=+||+.|.+||..
T Consensus 250 ~~~~~~~~qA~~~~~~~~~~~~----~~~~~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 250 PDAEEEEAQAEYYRDFLTACFS----HPPAAVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH----TTHCTEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred cchHHHHHHHHHHHHHHHHHHh----CCccCCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 24477889999999988742 12 112334444555533 544200 1223799999999964
No 33
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=55.23 E-value=37 Score=34.87 Aligned_cols=71 Identities=13% Similarity=0.256 Sum_probs=44.3
Q ss_pred CccEEEeccccCCCCCC--------CCCHHHHHHHHHHHHHhh-cCCCCCCCCCceeEEEEEeecCCCCCCCC-CCCcee
Q 048190 253 DLEVVVSETGWPSEGGE--------AATVDNASTYYKNVINHV-SAGTPKRPGKVIETYLFAMFDENQKGPAE-TERHFG 322 (336)
Q Consensus 253 ~~~v~I~ETGWPs~G~~--------~as~~na~~y~~~~~~~~-~~gtp~~~~~~~~~~~FeafDe~wK~~~~-~E~~wG 322 (336)
++||+|+|-|....... .-=...-+.+++.+.+.+ ..|.+ -..||.-++.|- +--..+ ..+.||
T Consensus 367 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~-----V~GY~~WSl~Dn-~Ew~~G~y~~RfG 440 (476)
T PRK09589 367 QLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVD-----LMGYTPWGCIDL-VSAGTGEMKKRYG 440 (476)
T ss_pred CCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCC-----eEEEeecccccc-ccccCCcccccee
Confidence 36899999999854321 112234456666666666 56544 235777777774 322234 789999
Q ss_pred eecCCCc
Q 048190 323 LFSPNKQ 329 (336)
Q Consensus 323 lf~~~~~ 329 (336)
|+.-|.+
T Consensus 441 lv~VD~~ 447 (476)
T PRK09589 441 FIYVDKD 447 (476)
T ss_pred eEEEcCC
Confidence 9988754
No 34
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=55.13 E-value=2.1e+02 Score=29.69 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=54.2
Q ss_pred cCCCeEEEeecCC--------cCc---CCC----CH--HHHHHHHHHhhhhcC-CCceEEEEEecccccCC---------
Q 048190 70 GSNIELMLGVANG--------DIQ---ALS----DP--SAASSWVQNNILAFT-PDVVFRYIAVGNEISPS--------- 122 (336)
Q Consensus 70 ~~gikv~lGv~~~--------~~~---~~a----~~--~~a~~wv~~~v~~~~-~~~~i~~I~VGNE~l~~--------- 122 (336)
+.++|++..-|-. ... .+. ++ ++-.+.+.+-|++|. ....|-+|++.||+...
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 4569999999943 111 111 11 233455666677774 34779999999999841
Q ss_pred -CcchHHHHHHHHH-HHHHHHhcCCCCCeeEEe-eeec
Q 048190 123 -DQAASFVLPAMQN-IYNAIVSANLQDQIKVST-AIQT 157 (336)
Q Consensus 123 -~~s~~~L~~~i~~-vk~~L~~~g~~~~i~Vtt-a~~~ 157 (336)
..+++++...|++ +.-+|++.|++.++++=. .|.+
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~ 283 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNR 283 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 2368899998986 999999999866788743 4443
No 35
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=54.33 E-value=18 Score=35.24 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=36.5
Q ss_pred hHHHHHhcCCCeEEEeecCCcCcC-CCCHHHHHHHHHHhhh---hcC--CCceEEEEEecccccCC----CcchHHHHHH
Q 048190 63 PTLQALRGSNIELMLGVANGDIQA-LSDPSAASSWVQNNIL---AFT--PDVVFRYIAVGNEISPS----DQAASFVLPA 132 (336)
Q Consensus 63 ~vl~A~~~~gikv~lGv~~~~~~~-~a~~~~a~~wv~~~v~---~~~--~~~~i~~I~VGNE~l~~----~~s~~~L~~~ 132 (336)
++-.-+.++|++|+.|+.--.-.. ..+...-..|=-++-. .|- ..-.|.+-=.|||.--. ..++.++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 455556789999999987421000 0011233466666633 221 23457778899995432 3468899998
Q ss_pred HHHHHHHHHhc
Q 048190 133 MQNIYNAIVSA 143 (336)
Q Consensus 133 i~~vk~~L~~~ 143 (336)
...+|+.|+..
T Consensus 193 ~~~Lr~il~~i 203 (319)
T PF03662_consen 193 FIQLRKILNEI 203 (319)
T ss_dssp H---HHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888763
No 36
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=54.15 E-value=32 Score=35.38 Aligned_cols=70 Identities=11% Similarity=0.221 Sum_probs=44.0
Q ss_pred ccEEEeccccCCCCCC--------CCCHHHHHHHHHHHHHhhc-CCCCCCCCCceeEEEEEeecC-CCCCCCCCCCceee
Q 048190 254 LEVVVSETGWPSEGGE--------AATVDNASTYYKNVINHVS-AGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFGL 323 (336)
Q Consensus 254 ~~v~I~ETGWPs~G~~--------~as~~na~~y~~~~~~~~~-~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wGl 323 (336)
+||+|+|-|....... .-=...-+.+++.+.+.+. .|.+. ..||.-++.|- .|.. ++..+.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v-----~GY~~WSl~Dn~EW~~-G~y~~RfGl 442 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVEL-----LGYTTWGCIDLVSAGT-GEMKKRYGF 442 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchHhhcccC-CCccCeece
Confidence 5899999999854421 1123455666666666663 55442 34677677763 3332 237899999
Q ss_pred ecCCCc
Q 048190 324 FSPNKQ 329 (336)
Q Consensus 324 f~~~~~ 329 (336)
+.-|..
T Consensus 443 ~~VD~~ 448 (478)
T PRK09593 443 IYVDRD 448 (478)
T ss_pred EEECCC
Confidence 988754
No 37
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=54.15 E-value=1.3e+02 Score=30.21 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=37.9
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcCCcceeecCCCcc
Q 048190 123 DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFS 202 (336)
Q Consensus 123 ~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~ 202 (336)
..+.+++..+++.+|+++ ..+.++|..-.+ || .+-...+...++|+.+. .+-.+|+++|--
T Consensus 255 ~~~~~~~~~~i~~lr~~~------pgi~i~~d~IvG-----fP-------GET~edf~~tl~fi~~~-~~~~~~v~~ysp 315 (418)
T PRK14336 255 GYTNQQYRELVERLKTAM------PDISLQTDLIVG-----FP-------SETEEQFNQSYKLMADI-GYDAIHVAAYSP 315 (418)
T ss_pred CCCHHHHHHHHHHHHhhC------CCCEEEEEEEEE-----CC-------CCCHHHHHHHHHHHHhc-CCCEEEeeecCC
Confidence 457888899999998874 235666654332 32 11234567788887654 344577777754
No 38
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=53.46 E-value=18 Score=31.64 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeec
Q 048190 42 EVVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVA 80 (336)
Q Consensus 42 ~v~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~ 80 (336)
--++.|+..|+++||+.+.+|.-+.++.+.|++|.=-++
T Consensus 130 igaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 130 IGAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 336789999999999999999999999999999875443
No 39
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=53.39 E-value=43 Score=34.25 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCCEEEE-------cc-----CC-------hhHHHHHhcCCCeEEEeecCCcCcC
Q 048190 41 QEVVDLYHANGITKMRI-------YD-----PN-------EPTLQALRGSNIELMLGVANGDIQA 86 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRl-------Y~-----~d-------~~vl~A~~~~gikv~lGv~~~~~~~ 86 (336)
++.+++++..|++.-|+ += .| .+++..+.+.||+-++.+..-++|.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 67788999888776665 31 12 2688999999999999999876553
No 40
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=53.00 E-value=1.7e+02 Score=29.35 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=45.2
Q ss_pred EEEEEecccccC--------CCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchh
Q 048190 110 FRYIAVGNEISP--------SDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGP 181 (336)
Q Consensus 110 i~~I~VGNE~l~--------~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~ 181 (336)
...+.+|=|-.. +..+.++...+++.+|+.+ ..+.|++..-.+ +| .+-...+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d~IvG-----fP-------gET~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV------PDASISSDIIVG-----FP-------TETEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCCEEEEEEEEE-----CC-------CCCHHHHHH
Confidence 456777766433 1456788888888888863 236677654322 32 122355677
Q ss_pred hHHHhhhcCCcceeecCCCccc
Q 048190 182 IVQFLKQTGAPLLANVYPYFSY 203 (336)
Q Consensus 182 ~vdfl~~~~~~~~vN~yPff~~ 203 (336)
.++|+.+.. +-.+|+++|--.
T Consensus 312 tl~fi~~~~-~~~~~~~~~sp~ 332 (434)
T PRK14330 312 TVDLVEKAQ-FERLNLAIYSPR 332 (434)
T ss_pred HHHHHHhcC-CCEEeeeeccCC
Confidence 889876543 445677776543
No 41
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=52.91 E-value=2.5e+02 Score=28.13 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=50.8
Q ss_pred hHHHHHhcCCCeEEEeecCCcCcCC----------------C--CHHHHHHHHHHhhhhcC-CCceEEEEEecccccCC-
Q 048190 63 PTLQALRGSNIELMLGVANGDIQAL----------------S--DPSAASSWVQNNILAFT-PDVVFRYIAVGNEISPS- 122 (336)
Q Consensus 63 ~vl~A~~~~gikv~lGv~~~~~~~~----------------a--~~~~a~~wv~~~v~~~~-~~~~i~~I~VGNE~l~~- 122 (336)
..|+++++.|++.+++..|+..-.+ . ...+-...+.+-++.|- -...|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 5889999999999998887631111 1 11222233333333321 23689999999999764
Q ss_pred ---C-----cchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeec
Q 048190 123 ---D-----QAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQT 157 (336)
Q Consensus 123 ---~-----~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~ 157 (336)
. .++++....|+.++.+|++.|+... |...+..
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea~ 228 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEAG 228 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEES
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecchh
Confidence 1 2588999999999999999999654 5555543
No 42
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=51.42 E-value=1.7e+02 Score=29.40 Aligned_cols=135 Identities=12% Similarity=0.203 Sum_probs=69.7
Q ss_pred ChHHHHHHH---HhCCCCEEEEccCC--------------hhHHHHHhc-CCCe-EEEeecCCcCcCCCCHHHHHHHHHH
Q 048190 39 SDQEVVDLY---HANGITKMRIYDPN--------------EPTLQALRG-SNIE-LMLGVANGDIQALSDPSAASSWVQN 99 (336)
Q Consensus 39 s~~~v~~~l---~~~~~~~VRlY~~d--------------~~vl~A~~~-~gik-v~lGv~~~~~~~~a~~~~a~~wv~~ 99 (336)
++++|++.+ ...|++.|.+.+.| ...++.+.+ .|+. +-++.-. ...+ +.+. .+.+++
T Consensus 177 ~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--P~~i-~~el-l~~l~~ 252 (439)
T PRK14328 177 KPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSH--PKDL-SDDL-IEAIAD 252 (439)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCC--hhhc-CHHH-HHHHHh
Confidence 567776544 34688888886543 145555543 2432 2222111 1122 2222 233433
Q ss_pred hhhhcCCCceEEEEEec----ccccC----CCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccc
Q 048190 100 NILAFTPDVVFRYIAVG----NEISP----SDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSF 171 (336)
Q Consensus 100 ~v~~~~~~~~i~~I~VG----NE~l~----~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f 171 (336)
. + .....+.+| |+.+. +..+.++...+++.+|+.+ ..+.+++..-.+ +|
T Consensus 253 ~-----~-~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d~IvG-----~P------ 309 (439)
T PRK14328 253 C-----D-KVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNI------PDVAITTDIIVG-----FP------ 309 (439)
T ss_pred C-----C-CcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhC------CCCEEEEEEEEE-----CC------
Confidence 1 1 124467776 33322 2557888888888888873 235565543222 22
Q ss_pred cccccccchhhHHHhhhcCCcceeecCCCcc
Q 048190 172 ADDANSYIGPIVQFLKQTGAPLLANVYPYFS 202 (336)
Q Consensus 172 ~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~ 202 (336)
.+-...+...++|+.+. .+-.+|+|+|--
T Consensus 310 -gET~ed~~~tl~~i~~l-~~~~~~~~~~sp 338 (439)
T PRK14328 310 -GETEEDFEETLDLVKEV-RYDSAFTFIYSK 338 (439)
T ss_pred -CCCHHHHHHHHHHHHhc-CCCcccceEecC
Confidence 11134567778887654 344667777654
No 43
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=49.83 E-value=45 Score=25.61 Aligned_cols=49 Identities=16% Similarity=0.077 Sum_probs=32.8
Q ss_pred cCCCceEEEEEeccc-ccCC---------CcchHHHHHHHHHHHHHHHhcCCCCCeeEEee
Q 048190 104 FTPDVVFRYIAVGNE-ISPS---------DQAASFVLPAMQNIYNAIVSANLQDQIKVSTA 154 (336)
Q Consensus 104 ~~~~~~i~~I~VGNE-~l~~---------~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta 154 (336)
|.....|.+-=|+|| .... +...+.+.+.++++-+.+++.. .+.|||+.
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~d--P~~pvt~g 63 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVD--PSQPVTSG 63 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT---TTS-EE--
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhC--CCCcEEee
Confidence 434578999999999 5511 1136788999999999999876 46889865
No 44
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=49.53 E-value=70 Score=22.90 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHhCCCCEEEEccCC-----hhHHHHHhcCCCeEEEeecC
Q 048190 37 LPSDQEVVDLYHANGITKMRIYDPN-----EPTLQALRGSNIELMLGVAN 81 (336)
Q Consensus 37 ~~s~~~v~~~l~~~~~~~VRlY~~d-----~~vl~A~~~~gikv~lGv~~ 81 (336)
.-+++++++..+++|++.|=+=+-+ +.....+++.|++++.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 3467899999999998877665444 34556667789999999864
No 45
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=49.40 E-value=1.2e+02 Score=31.36 Aligned_cols=135 Identities=10% Similarity=0.177 Sum_probs=71.6
Q ss_pred ChHHHHHHH---HhCCCCEEEEccCC---------------hhHHHHHhcCCCe-EEEeecCCcCcCCCCHHHHHHHHHH
Q 048190 39 SDQEVVDLY---HANGITKMRIYDPN---------------EPTLQALRGSNIE-LMLGVANGDIQALSDPSAASSWVQN 99 (336)
Q Consensus 39 s~~~v~~~l---~~~~~~~VRlY~~d---------------~~vl~A~~~~gik-v~lGv~~~~~~~~a~~~~a~~wv~~ 99 (336)
++++|++.+ ...|++.|.+.+-| ..+++++.+.+++ +-++... ...+. .+. .+.+++
T Consensus 242 ~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~--P~~i~-del-i~~m~~ 317 (509)
T PRK14327 242 RPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSH--PRDFD-DHL-IEVLAK 317 (509)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecC--cccCC-HHH-HHHHHh
Confidence 567777644 44688888886532 1456666655543 2222211 11232 222 122322
Q ss_pred hhhhcCCCceEEEEEeccccc----C----CCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccc
Q 048190 100 NILAFTPDVVFRYIAVGNEIS----P----SDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSF 171 (336)
Q Consensus 100 ~v~~~~~~~~i~~I~VGNE~l----~----~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f 171 (336)
. + -.+..+.+|=|-. . +.++.++.+..++.+|+++ ..+.++|..-.+ ||
T Consensus 318 ----~-g-~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~------p~i~i~tdiIvG-----fP------ 374 (509)
T PRK14327 318 ----G-G-NLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAI------PNVALTTDIIVG-----FP------ 374 (509)
T ss_pred ----c-C-CccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCcEEeeeEEEe-----CC------
Confidence 1 1 2345667664432 2 1557888999999998874 246666654322 32
Q ss_pred cccccccchhhHHHhhhcCCcceeecCCCcc
Q 048190 172 ADDANSYIGPIVQFLKQTGAPLLANVYPYFS 202 (336)
Q Consensus 172 ~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~ 202 (336)
.+-...+...++|+.+. .+-.+++|+|--
T Consensus 375 -gET~edf~~Tl~~v~~l-~~d~~~~f~ysp 403 (509)
T PRK14327 375 -NETDEQFEETLSLYREV-GFDHAYTFIYSP 403 (509)
T ss_pred -CCCHHHHHHHHHHHHHc-CCCeEEEeeeeC
Confidence 11234566778887543 344577777644
No 46
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=49.14 E-value=57 Score=33.51 Aligned_cols=71 Identities=8% Similarity=0.203 Sum_probs=43.2
Q ss_pred CccEEEeccccCCCCCC--------CCCHHHHHHHHHHHHHhhcCCCCCCCCCceeEEEEEeecCCCCCCCC-CCCceee
Q 048190 253 DLEVVVSETGWPSEGGE--------AATVDNASTYYKNVINHVSAGTPKRPGKVIETYLFAMFDENQKGPAE-TERHFGL 323 (336)
Q Consensus 253 ~~~v~I~ETGWPs~G~~--------~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~~~FeafDe~wK~~~~-~E~~wGl 323 (336)
++||+|+|-|....... .-=...-+.+++.+.+.+..|.+ -..||.-++.| +|--..+ ..+.|||
T Consensus 365 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~-----V~GY~~WSl~D-n~Ew~~G~y~~RfGL 438 (474)
T PRK09852 365 QKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIP-----LMGYTTWGCID-LVSASTGEMSKRYGF 438 (474)
T ss_pred CCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCC-----EEEEEeecccc-cccccCCCccceeee
Confidence 36899999999854321 11223445555566555556544 23477777777 3332224 7899999
Q ss_pred ecCCCc
Q 048190 324 FSPNKQ 329 (336)
Q Consensus 324 f~~~~~ 329 (336)
+.-|.+
T Consensus 439 v~VD~~ 444 (474)
T PRK09852 439 VYVDRD 444 (474)
T ss_pred EEECCC
Confidence 988754
No 47
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.71 E-value=1.2e+02 Score=30.86 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=70.6
Q ss_pred ChHHHHHHH---HhCCCCEEEEccCC--------------hhHHHHHhc-CCC-eEEEeecCCcCcCCCCHHHHHHHHHH
Q 048190 39 SDQEVVDLY---HANGITKMRIYDPN--------------EPTLQALRG-SNI-ELMLGVANGDIQALSDPSAASSWVQN 99 (336)
Q Consensus 39 s~~~v~~~l---~~~~~~~VRlY~~d--------------~~vl~A~~~-~gi-kv~lGv~~~~~~~~a~~~~a~~wv~~ 99 (336)
++++|++.+ ...|++.|.+.+.+ .++++++.+ .|+ .+-++..+ ...+ +.+.+ +.+++
T Consensus 185 ~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~--p~~i-~~ell-~~l~~ 260 (459)
T PRK14338 185 PLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSH--PAWM-TDRLI-HAVAR 260 (459)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecC--hhhc-CHHHH-HHHhc
Confidence 567776544 34689999888732 146677665 354 33332211 1122 22222 22332
Q ss_pred hhhhcCCCceEEEEEec----ccccC---C-CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccc
Q 048190 100 NILAFTPDVVFRYIAVG----NEISP---S-DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSF 171 (336)
Q Consensus 100 ~v~~~~~~~~i~~I~VG----NE~l~---~-~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f 171 (336)
. + ..+..+.+| ++.+. + ..+.++.+..++.+|+.+ ..+.+++..-.+ +|
T Consensus 261 ----~-~-~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~------pgi~i~~d~IvG-----~P------ 317 (459)
T PRK14338 261 ----L-P-KCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAI------PDVSLTTDIIVG-----HP------ 317 (459)
T ss_pred ----c-c-ccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhC------CCCEEEEEEEEE-----CC------
Confidence 1 1 123455554 33322 1 457888888888888763 135666544322 22
Q ss_pred cccccccchhhHHHhhhcCCcceeecCCCcc
Q 048190 172 ADDANSYIGPIVQFLKQTGAPLLANVYPYFS 202 (336)
Q Consensus 172 ~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~ 202 (336)
.+-...+.+.++|+.+.+ +-.+++++|--
T Consensus 318 -gET~ed~~~ti~~l~~l~-~~~v~i~~ysp 346 (459)
T PRK14338 318 -GETEEQFQRTYDLLEEIR-FDKVHIAAYSP 346 (459)
T ss_pred -CCCHHHHHHHHHHHHHcC-CCEeEEEecCC
Confidence 111355677888876543 44577777754
No 48
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=47.44 E-value=31 Score=31.06 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=31.3
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEee
Q 048190 44 VDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGV 79 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv 79 (336)
++.|+..|++.+|+.+.++.-+.++.+.|++|.=-+
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 688999999999999998877889999999997333
No 49
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=47.01 E-value=32 Score=30.78 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=30.9
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEee
Q 048190 44 VDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGV 79 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv 79 (336)
++.|+..|++.||+.+.++.-+.++.+.||+|.=-+
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIVERV 166 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 678999999999999998877889999999987333
No 50
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=44.98 E-value=1.3e+02 Score=30.14 Aligned_cols=135 Identities=16% Similarity=0.258 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcCCcceeecCCCcccc
Q 048190 125 AASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFSYI 204 (336)
Q Consensus 125 s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~~~ 204 (336)
+.+++...++..|+. +||+..-..-.-|...+. .=+|..+.-+...++++.|++.+=-++++++|+....
T Consensus 41 ~~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHc--------CCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 466777777777765 578877543333332221 0012222225678999999999999999999998842
Q ss_pred CCCCcccccccccccCCccccCCCCcchhhHHHHHHHHHHHHHHhC----CCCccEEEeccccCCCCCC-CCCHHHHHHH
Q 048190 205 GDTKDIRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAG----VPDLEVVVSETGWPSEGGE-AATVDNASTY 279 (336)
Q Consensus 205 ~~p~~~~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g----~~~~~v~I~ETGWPs~G~~-~as~~na~~y 279 (336)
.. .| ..++.. .+ .+ .++....+++. ||-.+.- --+-.+++.+
T Consensus 111 ~~------~~------------------~~~~~~-------~~-~~~~v~~~~g~~~~~~~-w~g~~~~~Dftnp~a~~w 157 (441)
T PF01055_consen 111 SP------DY------------------ENYDEA-------KE-KGYLVKNPDGSPYIGRV-WPGKGGFIDFTNPEARDW 157 (441)
T ss_dssp TT------B-------------------HHHHHH-------HH-TT-BEBCTTSSB-EEEE-TTEEEEEB-TTSHHHHHH
T ss_pred CC------cc------------------hhhhhH-------hh-cCceeecccCCcccccc-cCCcccccCCCChhHHHH
Confidence 11 11 122211 11 22 12235677777 8844322 3555668888
Q ss_pred HHHHHHhhcCCCCCCCCCceeEEEEEeec
Q 048190 280 YKNVINHVSAGTPKRPGKVIETYLFAMFD 308 (336)
Q Consensus 280 ~~~~~~~~~~gtp~~~~~~~~~~~FeafD 308 (336)
+++.++.+.+ ..+++.+|...=+
T Consensus 158 ~~~~~~~~~~------~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 158 WKEQLKELLD------DYGVDGWWLDFGE 180 (441)
T ss_dssp HHHHHHHHHT------TST-SEEEEESTT
T ss_pred HHHHHHHHHh------ccCCceEEeecCC
Confidence 8777766632 1279999887643
No 51
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=44.97 E-value=1e+02 Score=29.98 Aligned_cols=18 Identities=6% Similarity=0.123 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 048190 126 ASFVLPAMQNIYNAIVSA 143 (336)
Q Consensus 126 ~~~L~~~i~~vk~~L~~~ 143 (336)
...++..|+++|++|++.
T Consensus 133 ~~~~~~ll~~lr~~l~~~ 150 (362)
T cd02872 133 KENFVTLLKELREAFEPE 150 (362)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 567899999999999987
No 52
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=44.45 E-value=49 Score=34.36 Aligned_cols=76 Identities=14% Similarity=0.345 Sum_probs=50.5
Q ss_pred CCCccEEEeccccCCCCCC----------CCCHHHHHHHHHHHHHhhc-CCCCCCCCCceeEEEEEeecC-CCCCCCCCC
Q 048190 251 VPDLEVVVSETGWPSEGGE----------AATVDNASTYYKNVINHVS-AGTPKRPGKVIETYLFAMFDE-NQKGPAETE 318 (336)
Q Consensus 251 ~~~~~v~I~ETGWPs~G~~----------~as~~na~~y~~~~~~~~~-~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E 318 (336)
+.|.+|.|+|-|-+..... ..=.+..+.|++.+.+.+. .|. +-..||..++-|- .|.. +..
T Consensus 405 Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgv-----nv~GYf~WSLmDnfEw~~--Gy~ 477 (524)
T KOG0626|consen 405 YGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGV-----NVKGYFVWSLLDNFEWLD--GYK 477 (524)
T ss_pred cCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCC-----ceeeEEEeEcccchhhhc--Ccc
Confidence 7899999999999887443 2334555667777777663 221 1345888888773 3443 577
Q ss_pred CceeeecC------CCceeee
Q 048190 319 RHFGLFSP------NKQSKYE 333 (336)
Q Consensus 319 ~~wGlf~~------~~~~Ky~ 333 (336)
-.||||+- .|.||-+
T Consensus 478 ~RFGlyyVDf~d~l~R~pK~S 498 (524)
T KOG0626|consen 478 VRFGLYYVDFKDPLKRYPKLS 498 (524)
T ss_pred cccccEEEeCCCCCcCCchhH
Confidence 88999994 5666643
No 53
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.37 E-value=1.5e+02 Score=29.99 Aligned_cols=135 Identities=13% Similarity=0.213 Sum_probs=70.1
Q ss_pred ChHHHHHHHH---hCCCCEEEEcc-------CC-------hhHHHHHhcCCCe-EEEeecCCcCcCCCCHHHHHHHHHHh
Q 048190 39 SDQEVVDLYH---ANGITKMRIYD-------PN-------EPTLQALRGSNIE-LMLGVANGDIQALSDPSAASSWVQNN 100 (336)
Q Consensus 39 s~~~v~~~l~---~~~~~~VRlY~-------~d-------~~vl~A~~~~gik-v~lGv~~~~~~~~a~~~~a~~wv~~~ 100 (336)
+.++|++.++ ..|++.|.+.+ .+ .++++.+.+.|+. +-++..+ ...+ +.+.+ +.+++
T Consensus 168 ~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~--p~~i-~~ell-~~l~~- 242 (440)
T PRK14334 168 HPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSH--PMNF-TDDVI-AAMAE- 242 (440)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCC--cccC-CHHHH-HHHHh-
Confidence 5677766544 46787777643 22 2566766665652 3333211 1122 23322 22332
Q ss_pred hhhcCCCceEEEEEecccccC--------CCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCcccc
Q 048190 101 ILAFTPDVVFRYIAVGNEISP--------SDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFA 172 (336)
Q Consensus 101 v~~~~~~~~i~~I~VGNE~l~--------~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~ 172 (336)
. + ..+..+.+|=|-.. +.++.++.+..++.+|++. . ++.+++..-.+ +|
T Consensus 243 ---~-~-~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~----~--~i~i~~d~IvG-----~P------- 299 (440)
T PRK14334 243 ---T-P-AVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREAL----P--DVVLSTDIIVG-----FP------- 299 (440)
T ss_pred ---c-C-cCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhC----C--CcEEEEeEEEE-----CC-------
Confidence 1 1 12446666644332 2456788888888888763 2 35565544332 22
Q ss_pred ccccccchhhHHHhhhcCCcceeecCCCcc
Q 048190 173 DDANSYIGPIVQFLKQTGAPLLANVYPYFS 202 (336)
Q Consensus 173 ~~~~~~l~~~vdfl~~~~~~~~vN~yPff~ 202 (336)
.+-...+.+.++|+.+. .+-.+++|+|--
T Consensus 300 gEt~ed~~~tl~~i~~l-~~~~i~~f~ysp 328 (440)
T PRK14334 300 GETEEDFQETLSLYDEV-GYDSAYMFIYSP 328 (440)
T ss_pred CCCHHHHHHHHHHHHhc-CCCEeeeeEeeC
Confidence 11124566778887553 355677777643
No 54
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.20 E-value=79 Score=31.45 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=29.5
Q ss_pred HhCCCCccEEEeccccCCCCCC------CCCHHHHHHHHHHHHHhhc
Q 048190 248 KAGVPDLEVVVSETGWPSEGGE------AATVDNASTYYKNVINHVS 288 (336)
Q Consensus 248 ~~g~~~~~v~I~ETGWPs~G~~------~as~~na~~y~~~~~~~~~ 288 (336)
..|....+|+.+ |||+|.- ..|-+.++.-+.+++..+.
T Consensus 142 d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La 185 (377)
T COG4782 142 DSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLA 185 (377)
T ss_pred hcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHH
Confidence 356677888877 9999987 5777777888888887774
No 55
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=43.18 E-value=1.4e+02 Score=26.01 Aligned_cols=78 Identities=9% Similarity=-0.082 Sum_probs=42.6
Q ss_pred hHHHHHhcCCCeEEEeecCCcCcCC-CCHHH----HHHHHHHhhhhcCCCceEEEEEecccccCCCcchHHHHHHHHHHH
Q 048190 63 PTLQALRGSNIELMLGVANGDIQAL-SDPSA----ASSWVQNNILAFTPDVVFRYIAVGNEISPSDQAASFVLPAMQNIY 137 (336)
Q Consensus 63 ~vl~A~~~~gikv~lGv~~~~~~~~-a~~~~----a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~s~~~L~~~i~~vk 137 (336)
.+|+++.+.||||++|++.+..-.- .+... ....+..-...|.....+.+--+-.|.=.. .....+..+.+.
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~---~~~~~~~~~~l~ 145 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY---NWNAPERFALLG 145 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc---ccchHHHHHHHH
Confidence 5888989999999999997621110 11111 111111112234222457777777776433 123355666666
Q ss_pred HHHHhc
Q 048190 138 NAIVSA 143 (336)
Q Consensus 138 ~~L~~~ 143 (336)
+.|++.
T Consensus 146 ~~lk~~ 151 (166)
T PF14488_consen 146 KYLKQI 151 (166)
T ss_pred HHHHHh
Confidence 666655
No 56
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=42.94 E-value=40 Score=34.61 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=43.5
Q ss_pred CccEEEeccccCCCCCC--------CCCHHHHHHHHHHHHHhhc-CCCCCCCCCceeEEEEEeecC-CCCCCCCCCCcee
Q 048190 253 DLEVVVSETGWPSEGGE--------AATVDNASTYYKNVINHVS-AGTPKRPGKVIETYLFAMFDE-NQKGPAETERHFG 322 (336)
Q Consensus 253 ~~~v~I~ETGWPs~G~~--------~as~~na~~y~~~~~~~~~-~gtp~~~~~~~~~~~FeafDe-~wK~~~~~E~~wG 322 (336)
++||+|+|-|....... .-=...-+.+++.+.+.+. +|.+ -..||.-++.|- .|.. ++..+.||
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~-----v~GY~~WSl~DnfEw~~-G~y~~RfG 441 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVD-----LMGYTPWGCIDCVSFTT-GQYSKRYG 441 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCC-----EEEEeeccchhhhcccC-CCccCccc
Confidence 36899999999864321 1123344556666666663 6544 234677777773 3433 23889999
Q ss_pred eecCCCc
Q 048190 323 LFSPNKQ 329 (336)
Q Consensus 323 lf~~~~~ 329 (336)
|+.-|++
T Consensus 442 l~~VD~~ 448 (477)
T PRK15014 442 FIYVNKH 448 (477)
T ss_pred eEEECCC
Confidence 9977543
No 57
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=42.35 E-value=69 Score=29.41 Aligned_cols=37 Identities=16% Similarity=0.477 Sum_probs=23.7
Q ss_pred hCCCCccEEEeccccCCCCCC------CCCHHHHHHHHHHHHHhhc
Q 048190 249 AGVPDLEVVVSETGWPSEGGE------AATVDNASTYYKNVINHVS 288 (336)
Q Consensus 249 ~g~~~~~v~I~ETGWPs~G~~------~as~~na~~y~~~~~~~~~ 288 (336)
+++++.+|.. .|||.|.. ..+.......+.+++..+.
T Consensus 45 ~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 45 LGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred hCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5566655554 59999986 3445555666666776663
No 58
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=40.37 E-value=36 Score=33.89 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=29.4
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEE
Q 048190 44 VDLYHANGITKMRIYDPNEPTLQALRGSNIELML 77 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~l 77 (336)
+++|+..|+++|||. +||.=+.++.+.||+|.=
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 679999999999999 788878889999999873
No 59
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=40.33 E-value=3.2e+02 Score=25.76 Aligned_cols=140 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred CCCChHHHHHHHHhCCCCEEEEccCC-------hhHHHH---HhcCCCeEEEeecCCcCcC----CCCHHHHHHHHHHhh
Q 048190 36 NLPSDQEVVDLYHANGITKMRIYDPN-------EPTLQA---LRGSNIELMLGVANGDIQA----LSDPSAASSWVQNNI 101 (336)
Q Consensus 36 ~~~s~~~v~~~l~~~~~~~VRlY~~d-------~~vl~A---~~~~gikv~lGv~~~~~~~----~a~~~~a~~wv~~~v 101 (336)
+.+++.+.++.|+..|++.|-+.++. ..+... ....--++.+|-|.=.... ..+...+.+.+.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 35889999999999999999999876 234443 3333458999988632111 112233333344333
Q ss_pred hhcCCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchh
Q 048190 102 LAFTPDVVFRYIAVGNEISPSDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGP 181 (336)
Q Consensus 102 ~~~~~~~~i~~I~VGNE~l~~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~ 181 (336)
..-.++..+..+-=||+- ... ..-..++..|++.|+ .++-|+|.+ .+| .+.+
T Consensus 136 ~~~~~~~a~vlmGHGt~h-----~an---~~Y~~l~~~l~~~~~-~~v~vgtvE-------G~P------------~~~~ 187 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPH-----PAN---AAYSALQAMLKKHGY-PNVFVGTVE-------GYP------------SLED 187 (262)
T ss_dssp -TT-TTEEEEEEE---SC-----HHH---HHHHHHHHHHHCCT--TTEEEEETT-------SSS------------BHHH
T ss_pred cccCCCCEEEEEeCCCCC-----Ccc---HHHHHHHHHHHhCCC-CeEEEEEeC-------CCC------------CHHH
Confidence 211123334344444432 122 234556788888776 468999965 343 2456
Q ss_pred hHHHhhhcCCcceeecCCCcccc
Q 048190 182 IVQFLKQTGAPLLANVYPYFSYI 204 (336)
Q Consensus 182 ~vdfl~~~~~~~~vN~yPff~~~ 204 (336)
++..|...+ +=-|.+.||.--.
T Consensus 188 vi~~L~~~g-~k~V~L~PlMlVA 209 (262)
T PF06180_consen 188 VIARLKKKG-IKKVHLIPLMLVA 209 (262)
T ss_dssp HHHHHHHHT--SEEEEEEESSS-
T ss_pred HHHHHHhcC-CCeEEEEeccccc
Confidence 666665543 3469999998743
No 60
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=37.00 E-value=55 Score=29.24 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=31.0
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEee
Q 048190 44 VDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGV 79 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv 79 (336)
++.|+..|++.+|+.+.++.-+.++.+.|++|.=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 678999999999999998877888999999988444
No 61
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=35.77 E-value=2.9e+02 Score=27.70 Aligned_cols=137 Identities=10% Similarity=0.166 Sum_probs=71.2
Q ss_pred ChHHHHHHHH---hCCCCEEEEccC----------C----hhHHHHHhcCC-CeEEEeecCCcCcCCCCHHHHHHHHHHh
Q 048190 39 SDQEVVDLYH---ANGITKMRIYDP----------N----EPTLQALRGSN-IELMLGVANGDIQALSDPSAASSWVQNN 100 (336)
Q Consensus 39 s~~~v~~~l~---~~~~~~VRlY~~----------d----~~vl~A~~~~g-ikv~lGv~~~~~~~~a~~~~a~~wv~~~ 100 (336)
++++|++.++ ..|++.|.+++- + .++++++.+.+ ++ ++.+..-....+ +.+. .+.++++
T Consensus 165 ~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~-~~r~~~~~p~~~-~~el-l~~~~~~ 241 (430)
T TIGR01125 165 PIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIY-WIRMHYLYPDEL-TDDV-IDLMAEG 241 (430)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCcc-EEEEccCCcccC-CHHH-HHHHhhC
Confidence 5677776544 357888887531 1 24677776654 43 222111011122 2332 2223332
Q ss_pred hhhcCCCceEEEEEecccccC-------C-CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCcccc
Q 048190 101 ILAFTPDVVFRYIAVGNEISP-------S-DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFA 172 (336)
Q Consensus 101 v~~~~~~~~i~~I~VGNE~l~-------~-~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~ 172 (336)
+ .....+.+|=|-.. + ..+.++.+.+++.+|+.. ..+.|++..-.+ +|
T Consensus 242 -----~-~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~------~~i~i~~~~I~G-----~P------- 297 (430)
T TIGR01125 242 -----P-KVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKC------PDAVLRTTFIVG-----FP------- 297 (430)
T ss_pred -----C-cccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhC------CCCeEeEEEEEE-----CC-------
Confidence 1 12335555544322 1 456788888888888763 135565543222 22
Q ss_pred ccccccchhhHHHhhhcCCcceeecCCCccc
Q 048190 173 DDANSYIGPIVQFLKQTGAPLLANVYPYFSY 203 (336)
Q Consensus 173 ~~~~~~l~~~vdfl~~~~~~~~vN~yPff~~ 203 (336)
.+-...+...++|+.+. .+-.+|+++|--.
T Consensus 298 gET~e~~~~t~~fl~~~-~~~~~~~~~~sp~ 327 (430)
T TIGR01125 298 GETEEDFQELLDFVEEG-QFDRLGAFTYSPE 327 (430)
T ss_pred CCCHHHHHHHHHHHHhc-CCCEEeeeeccCC
Confidence 11135677889998654 4556788887664
No 62
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=35.63 E-value=47 Score=32.99 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=30.9
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeec
Q 048190 44 VDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVA 80 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~ 80 (336)
++.|+..|+++|||.. ||.-+.++.+.||+|.==++
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 6899999999999998 88888889999999874443
No 63
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=33.59 E-value=4e+02 Score=28.38 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=50.4
Q ss_pred hHHHHH----HHHhCCCCEEEEccC-C--h---hHHHHHhcCCCeEEEeecCCcCcCCCCHHHHHHHHHHhhhhcCCCce
Q 048190 40 DQEVVD----LYHANGITKMRIYDP-N--E---PTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILAFTPDVV 109 (336)
Q Consensus 40 ~~~v~~----~l~~~~~~~VRlY~~-d--~---~vl~A~~~~gikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~~~~~~~ 109 (336)
+++|++ ....+|++.+|+|++ + . ..++++++.|..+...+-....+.. ..+.-.++++. +... +.+
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~-t~e~~~~~ak~-l~~~-Gad- 169 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVH-TLDNFLELGKK-LAEM-GCD- 169 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCC-CHHHHHHHHHH-HHHc-CCC-
Confidence 455554 334689999999986 3 2 3556677899988777555433322 34443443443 2222 222
Q ss_pred EEEEEecccccCCCcchHHHHHHHHHHHHHH
Q 048190 110 FRYIAVGNEISPSDQAASFVLPAMQNIYNAI 140 (336)
Q Consensus 110 i~~I~VGNE~l~~~~s~~~L~~~i~~vk~~L 140 (336)
.|.+- ...+-.+|.++-..++.+|+.+
T Consensus 170 --~I~Ik--DtaG~l~P~~v~~lv~alk~~~ 196 (596)
T PRK14042 170 --SIAIK--DMAGLLTPTVTVELYAGLKQAT 196 (596)
T ss_pred --EEEeC--CcccCCCHHHHHHHHHHHHhhc
Confidence 23222 1111234666666666666654
No 64
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.25 E-value=5.1e+02 Score=25.95 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcCCcceeecCCCcc
Q 048190 123 DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFS 202 (336)
Q Consensus 123 ~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~ 202 (336)
..+.++.+.+++.+|+.+. .+.++|..-. .|| .+-...+...++|+.+. .+-.+|+|+|--
T Consensus 261 ~~t~~~~~~~v~~lr~~~p------~i~i~~d~Iv-----GfP-------gETeedf~~Tl~fl~~l-~~~~~~~f~~sp 321 (420)
T PRK14339 261 GYTKEWFLNRAEKLRALVP------EVSISTDIIV-----GFP-------GESDKDFEDTMDVLEKV-RFEQIFSFKYSP 321 (420)
T ss_pred CCCHHHHHHHHHHHHHHCC------CCEEEEEEEE-----ECC-------CCCHHHHHHHHHHHHhc-CCCEEeeEecCC
Confidence 4578888888888888742 3567664322 233 12235567778887543 333467776543
No 65
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=33.03 E-value=1e+02 Score=29.65 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=52.7
Q ss_pred ceEEEEEecccccC----CCc-----chHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCc----ccccc
Q 048190 108 VVFRYIAVGNEISP----SDQ-----AASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAG----SFADD 174 (336)
Q Consensus 108 ~~i~~I~VGNE~l~----~~~-----s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~----~f~~~ 174 (336)
..|...+||+|..- |+. .++.|...+.+||..| | ..++||-+-.|+.+.. +.|..| .|+
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~-~~p~dg~gd~~f~-- 89 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFG-YQPADGSGDVYFH-- 89 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcC-cCCCCCCCccccc--
Confidence 57899999999632 211 2678999999999998 3 4689999988887754 445444 233
Q ss_pred ccccchhhHHHhhhcCCcceeecCCCcc
Q 048190 175 ANSYIGPIVQFLKQTGAPLLANVYPYFS 202 (336)
Q Consensus 175 ~~~~l~~~vdfl~~~~~~~~vN~yPff~ 202 (336)
|.++. -...-|+++|+.|.=.+
T Consensus 90 ----LDpLW--a~~~IDfIGID~Y~PLS 111 (299)
T PF13547_consen 90 ----LDPLW--ADPNIDFIGIDNYFPLS 111 (299)
T ss_pred ----Ccccc--cCCcCCEEEeecccccC
Confidence 22221 11244557898875544
No 66
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.87 E-value=64 Score=32.34 Aligned_cols=38 Identities=29% Similarity=0.356 Sum_probs=33.1
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeecC
Q 048190 44 VDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVAN 81 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~~ 81 (336)
.+.|+..|+++||+...+|.-+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 67899999999999999998888999999999855554
No 67
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=32.81 E-value=1.2e+02 Score=25.48 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=33.2
Q ss_pred hHHHHHHHHhCCCCEEEEccCC-----------------------hhHHHHHhcCCCeEEEeecCC
Q 048190 40 DQEVVDLYHANGITKMRIYDPN-----------------------EPTLQALRGSNIELMLGVANG 82 (336)
Q Consensus 40 ~~~v~~~l~~~~~~~VRlY~~d-----------------------~~vl~A~~~~gikv~lGv~~~ 82 (336)
++++++.|+..++++|-+|.-+ -++++|+.+.||+|++-+...
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 5777888888888888886531 167888899999999888764
No 68
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=32.53 E-value=1.2e+02 Score=27.27 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccch-hhHHHhhhcCCcceeecC
Q 048190 130 LPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIG-PIVQFLKQTGAPLLANVY 198 (336)
Q Consensus 130 ~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~-~~vdfl~~~~~~~~vN~y 198 (336)
-.+++.+.+.+...|+.+ |++.+.... +.| + .+... ++.+.+.+.+=|+.+|+-
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~------~~~-------~-~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGG------FDP-------D-DPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETT------CCT-------T-SGHCHHHHHHHHHHHT-EEEEEES
T ss_pred hhHHHHHHHhccccceee-eEecCCCCc------ccc-------c-cHHHHHHHHHHHHhhccceeeecc
Confidence 467888888888888855 776553211 111 1 13344 788888888888877754
No 69
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=31.76 E-value=3.5e+02 Score=29.80 Aligned_cols=143 Identities=11% Similarity=0.152 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcCCcceeecCCCccccCCCCc
Q 048190 130 LPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFSYIGDTKD 209 (336)
Q Consensus 130 ~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~~~~~p~~ 209 (336)
+..|+++.+..+++|+.-++.|.--|-++.+.+ | ++.+..-+.+.+.+|-|++.+--+.+=+.|++...
T Consensus 310 ls~~~dvv~~~~~agiPld~~~~DiDyMd~ykD-F-----Tvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~----- 378 (805)
T KOG1065|consen 310 LSVVRDVVENYRAAGIPLDVIVIDIDYMDGYKD-F-----TVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTN----- 378 (805)
T ss_pred HHHHHHHHHHHHHcCCCcceeeeehhhhhcccc-e-----eeccccCcchHHHHHHHHhCCCeEEEEeCCccccC-----
Confidence 567999999999999866677766665444443 2 12222235566777778888888888888999842
Q ss_pred ccccccccccCCccccCCCCcchhhHHHHHHHHHHHHHHhCCCCccEEEeccccCCCCCC-CCCHHHHHHHHHHHHHhhc
Q 048190 210 IRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSETGWPSEGGE-AATVDNASTYYKNVINHVS 288 (336)
Q Consensus 210 ~~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~-~as~~na~~y~~~~~~~~~ 288 (336)
.+ |+.|... . ..+-. +. .-.+..+ +++| -||..-.- .=+-.+...++.+-++++.
T Consensus 379 ~~--y~~y~~g-------~---------~~~v~---I~-~~~g~~~-~lg~-vwP~~~~fpDftnp~~~~Ww~~~~~~fh 434 (805)
T KOG1065|consen 379 SS--YGPYDRG-------V---------AKDVL---IK-NREGSPK-MLGE-VWPGSTAFPDFTNPAVVEWWLDELKRFH 434 (805)
T ss_pred cc--chhhhhh-------h---------hhcee---ee-cccCchh-hhcc-cCCCcccccccCCchHHHHHHHHHHhhc
Confidence 22 4433310 0 00000 00 0011111 3343 37762111 1122266677766666653
Q ss_pred CCCCCCCCCceeEEEEEeecCCCCC
Q 048190 289 AGTPKRPGKVIETYLFAMFDENQKG 313 (336)
Q Consensus 289 ~gtp~~~~~~~~~~~FeafDe~wK~ 313 (336)
...+++-+|+.+.--.|+.
T Consensus 435 ------~~vp~dg~wiDmnE~snf~ 453 (805)
T KOG1065|consen 435 ------DEVPFDGFWIDMNEPSNFP 453 (805)
T ss_pred ------ccCCccceEEECCCcccCC
Confidence 2458899999998776665
No 70
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.75 E-value=68 Score=32.30 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=32.6
Q ss_pred HHHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeec
Q 048190 43 VVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVA 80 (336)
Q Consensus 43 v~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~ 80 (336)
-.+.|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 36789999999999999999888899999999984444
No 71
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=31.74 E-value=4.7e+02 Score=25.10 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCc-------cccccccccchhhHHHhhhcCCcceeec
Q 048190 125 AASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAG-------SFADDANSYIGPIVQFLKQTGAPLLANV 197 (336)
Q Consensus 125 s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~-------~f~~~~~~~l~~~vdfl~~~~~~~~vN~ 197 (336)
+.+++...++++|+. +||+..-.-- .|......+.| +|..+--|....+++.|++.+=-+++.+
T Consensus 21 s~~~v~~~~~~~~~~--------~iP~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 21 GTDKVLEALEKARAA--------GVKVAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYI 91 (317)
T ss_pred CHHHHHHHHHHHHHc--------CCCeeEEEEc-cccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 556777777766665 4677665321 22111001111 2333223667889999999999999999
Q ss_pred CCCccc
Q 048190 198 YPYFSY 203 (336)
Q Consensus 198 yPff~~ 203 (336)
.|+...
T Consensus 92 ~P~v~~ 97 (317)
T cd06594 92 NPYLAD 97 (317)
T ss_pred cCceec
Confidence 999874
No 72
>PRK08815 GTP cyclohydrolase; Provisional
Probab=31.31 E-value=69 Score=31.94 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=32.7
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeecC
Q 048190 44 VDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVAN 81 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~~ 81 (336)
.+.|+..|+++||+.+.++.=+.++.+.|++|.=-++.
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~ 342 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRV 342 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 67899999999999999998788999999999855543
No 73
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.23 E-value=67 Score=31.63 Aligned_cols=34 Identities=12% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHHHHHhCCCCEEEEccCC-hhHHHHHhcCCCeEE
Q 048190 43 VVDLYHANGITKMRIYDPN-EPTLQALRGSNIELM 76 (336)
Q Consensus 43 v~~~l~~~~~~~VRlY~~d-~~vl~A~~~~gikv~ 76 (336)
-.+.|+..|+++||+...+ |.-+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3678999999999999999 877888999999986
No 74
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=30.78 E-value=71 Score=32.69 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=32.7
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeecC
Q 048190 44 VDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVAN 81 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~~ 81 (336)
.++|+..|+++||+...+|.-+.++.+.||+|.=-++.
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp~ 410 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVPL 410 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEecc
Confidence 67899999999999999998888999999999744443
No 75
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=30.34 E-value=4.6e+02 Score=25.24 Aligned_cols=131 Identities=13% Similarity=0.181 Sum_probs=71.9
Q ss_pred HHHHHHhCCCCEEEEccCC------------hhHHHHHhcC--CCeEEEeecCCcCcCCCCHHHHHHHHHHhhhhcCCCc
Q 048190 43 VVDLYHANGITKMRIYDPN------------EPTLQALRGS--NIELMLGVANGDIQALSDPSAASSWVQNNILAFTPDV 108 (336)
Q Consensus 43 v~~~l~~~~~~~VRlY~~d------------~~vl~A~~~~--gikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~~~~~~ 108 (336)
+++.++..|++.|-+-+.| .++++++++. ++.|-+..+. ... ..+....+.+....-+ + .
T Consensus 99 ~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d--~~g--~~e~l~~l~~aG~dv~-~-h 172 (302)
T TIGR00510 99 LAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPD--FRG--NIAALDILLDAPPDVY-N-H 172 (302)
T ss_pred HHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCc--ccC--CHHHHHHHHHcCchhh-c-c
Confidence 3445667888888776432 2577777653 4554444332 111 2333222222111111 1 1
Q ss_pred eEEEEEecccccCC----CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHH
Q 048190 109 VFRYIAVGNEISPS----DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQ 184 (336)
Q Consensus 109 ~i~~I~VGNE~l~~----~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vd 184 (336)
++. +.+.++. ..+.++-+..++.+|+.. ..++++|..-.+. .++ ...+.+.++
T Consensus 173 nlE----t~~~l~~~vrr~~t~e~~Le~l~~ak~~~------pgi~~~TgiIVGl-GET------------eee~~etl~ 229 (302)
T TIGR00510 173 NLE----TVERLTPFVRPGATYRWSLKLLERAKEYL------PNLPTKSGIMVGL-GET------------NEEIKQTLK 229 (302)
T ss_pred ccc----chHHHHHHhCCCCCHHHHHHHHHHHHHhC------CCCeecceEEEEC-CCC------------HHHHHHHHH
Confidence 222 2233442 456788888888888874 2467777655444 432 245677888
Q ss_pred HhhhcCCcceeecCCCccc
Q 048190 185 FLKQTGAPLLANVYPYFSY 203 (336)
Q Consensus 185 fl~~~~~~~~vN~yPff~~ 203 (336)
+|.+ ..+-.+++.+|+..
T Consensus 230 ~Lre-lg~d~v~igqYl~p 247 (302)
T TIGR00510 230 DLRD-HGVTMVTLGQYLRP 247 (302)
T ss_pred HHHh-cCCCEEEeecccCC
Confidence 8754 46778899999885
No 76
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=29.72 E-value=75 Score=33.33 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=55.6
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeecCCc-CcCCCCHH--HHHHHHHHhhhhcCCCceEEEEEeccccc
Q 048190 44 VDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVANGD-IQALSDPS--AASSWVQNNILAFTPDVVFRYIAVGNEIS 120 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~~~~-~~~~a~~~--~a~~wv~~~v~~~~~~~~i~~I~VGNE~l 120 (336)
+++|+..|+++||+...+|.=+.++.+.|++|.=-++..- .... +.. ..++---.|...- +......|..-.+
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~-n~~YL~tK~~k~gH~l~~-~~~~~~~~~~~~~-- 418 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDY-NAEYLATKAEKLGHLLLQ-TYLVTIAIAWDGE-- 418 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCCcc-hhHHHHHHHHhhCCccCC-CccccEEEEecCC--
Confidence 6789999999999999999889999999999985555421 1111 221 1111000111110 0011111211111
Q ss_pred CCCcchHHHHHHHHHHHHHHHhcCC
Q 048190 121 PSDQAASFVLPAMQNIYNAIVSANL 145 (336)
Q Consensus 121 ~~~~s~~~L~~~i~~vk~~L~~~g~ 145 (336)
..+..++-..+..++...++.++
T Consensus 419 --~~~~~~~~~~~~~~~~~~~~~~~ 441 (555)
T PRK09319 419 --PYSVTERYELLEKLRHLARSHGL 441 (555)
T ss_pred --CCchHHHHHHHHHHHHHHHhcCc
Confidence 13467777888888888887776
No 77
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.48 E-value=3.3e+02 Score=27.51 Aligned_cols=135 Identities=12% Similarity=0.205 Sum_probs=72.1
Q ss_pred ChHHHHHHHH---hCCCCEEEEccCC---------------hhHHHHHhc-CCCe-EEEeecCCcCcCCCCHHHHHHHHH
Q 048190 39 SDQEVVDLYH---ANGITKMRIYDPN---------------EPTLQALRG-SNIE-LMLGVANGDIQALSDPSAASSWVQ 98 (336)
Q Consensus 39 s~~~v~~~l~---~~~~~~VRlY~~d---------------~~vl~A~~~-~gik-v~lGv~~~~~~~~a~~~~a~~wv~ 98 (336)
++++|++.++ ..|++.|.+++.| ..++.++.+ .|+. +-++.. ....+ +.+.+ +.++
T Consensus 178 ~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~--~p~~i-~~ell-~~l~ 253 (446)
T PRK14337 178 SSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTP--HPKDI-APEVI-EAFG 253 (446)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccC--CcccC-CHHHH-HHHH
Confidence 5677765443 4688889887633 135555544 3442 333221 11123 22222 2233
Q ss_pred HhhhhcCCCceEEEEEecccccC--------CCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCcc
Q 048190 99 NNILAFTPDVVFRYIAVGNEISP--------SDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGS 170 (336)
Q Consensus 99 ~~v~~~~~~~~i~~I~VGNE~l~--------~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~ 170 (336)
+ . + .....+.+|=|-.. +..+.++...+++.+|+.. ..+.+++..-.+ +|
T Consensus 254 ~----~-~-~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~------~~i~i~~d~IvG-----~P----- 311 (446)
T PRK14337 254 E----L-P-NLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAAR------PDIALTTDLIVG-----FP----- 311 (446)
T ss_pred h----C-C-cccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhC------CCCeEEEeEEEE-----CC-----
Confidence 2 1 1 13457777755433 1457888888888888874 235666654322 32
Q ss_pred ccccccccchhhHHHhhhcCCcceeecCCCcc
Q 048190 171 FADDANSYIGPIVQFLKQTGAPLLANVYPYFS 202 (336)
Q Consensus 171 f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~ 202 (336)
.+-...+.+.++|+.+. .+-.+|+|+|-.
T Consensus 312 --gET~ed~~~tl~~l~~~-~~~~~~~f~ysp 340 (446)
T PRK14337 312 --GETEEDFEQTLEAMRTV-GFASSFSFCYSD 340 (446)
T ss_pred --CCCHHHHHHHHHHHHhc-CCCeeEEEecCC
Confidence 11235577788887554 456777777644
No 78
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=28.75 E-value=1.2e+02 Score=24.53 Aligned_cols=37 Identities=19% Similarity=0.444 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCEEEEcc--CC---hhHHHHHhcCCCeEEE
Q 048190 41 QEVVDLYHANGITKMRIYD--PN---EPTLQALRGSNIELML 77 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~--~d---~~vl~A~~~~gikv~l 77 (336)
+++.+.++.+|++.|+++- .. ..+|+++...|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 5556677788999888883 33 4799999999998653
No 79
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=28.57 E-value=4.6e+02 Score=27.02 Aligned_cols=39 Identities=33% Similarity=0.513 Sum_probs=27.2
Q ss_pred HHHHHhCCCCEEEEccC-C--h---hHHHHHhcCCCeEEEeecCC
Q 048190 44 VDLYHANGITKMRIYDP-N--E---PTLQALRGSNIELMLGVANG 82 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~-d--~---~vl~A~~~~gikv~lGv~~~ 82 (336)
++....+|++.+|+|+. + . ..++++++.|..+.+.+--.
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt 155 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYT 155 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 44455689999999985 3 2 35566678999876655543
No 80
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=28.19 E-value=1.3e+02 Score=25.07 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeec
Q 048190 41 QEVVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVA 80 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~ 80 (336)
..+.++|+.+|++.|=+...-++.+.++++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 4678999999999988877778999999999999999876
No 81
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=28.15 E-value=6.3e+02 Score=25.38 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=43.4
Q ss_pred EEEEEecccccC-------C-CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchh
Q 048190 110 FRYIAVGNEISP-------S-DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGP 181 (336)
Q Consensus 110 i~~I~VGNE~l~-------~-~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~ 181 (336)
+..+.+|=|-.. + ..+.++.+..++.+|+.. ..+.+++..-.+ +| .+-...+.+
T Consensus 257 ~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~------~~i~i~~d~IvG-----~P-------gEt~ed~~~ 318 (438)
T TIGR01574 257 CKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAAC------PNVSISTDIIVG-----FP-------GETEEDFEE 318 (438)
T ss_pred cCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCCeEeeCEEEe-----CC-------CCCHHHHHH
Confidence 456665544332 1 457888888888888773 236666544332 22 111245667
Q ss_pred hHHHhhhcCCcceeecCCCcc
Q 048190 182 IVQFLKQTGAPLLANVYPYFS 202 (336)
Q Consensus 182 ~vdfl~~~~~~~~vN~yPff~ 202 (336)
.++|+.+.. +=.+++++|--
T Consensus 319 tl~~i~~~~-~~~~~~~~~sp 338 (438)
T TIGR01574 319 TLDLLREVE-FDSAFSFIYSP 338 (438)
T ss_pred HHHHHHhcC-CCeeeeEEecC
Confidence 888886654 44577777744
No 82
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=27.53 E-value=5.5e+02 Score=25.59 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=59.8
Q ss_pred HHHHHHHHhCCCCEEEEccC----------Ch------------hHHHHHhcCCCeEEEeecCCc------Cc-----CC
Q 048190 41 QEVVDLYHANGITKMRIYDP----------NE------------PTLQALRGSNIELMLGVANGD------IQ-----AL 87 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY~~----------d~------------~vl~A~~~~gikv~lGv~~~~------~~-----~~ 87 (336)
++....+++.|++.||+.-+ +| ++++.+.+.||.|++-+-... .. .+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56667788999999999743 32 456777789999999854322 01 11
Q ss_pred CC-----HHHHHHHHHHhhhhcCCCceEEEEEecccccC--CCcchHHH-HHHHHHHHHHHHhc
Q 048190 88 SD-----PSAASSWVQNNILAFTPDVVFRYIAVGNEISP--SDQAASFV-LPAMQNIYNAIVSA 143 (336)
Q Consensus 88 a~-----~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~--~~~s~~~L-~~~i~~vk~~L~~~ 143 (336)
.. +.....| +.-...|.....|.++-+=||+.. .+...... -++...||+.+.+.
T Consensus 156 ~~~~~~~~~~~~~w-~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW-KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH-HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 12 1222222 222234434567778888899984 12222333 47777777666544
No 83
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=26.80 E-value=40 Score=33.52 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=29.3
Q ss_pred CCEEEEc--cCC-hhHHHHHhc-CCCeEEEeecCCcCcCCCCHHHHHHHHHHhhhhc
Q 048190 52 ITKMRIY--DPN-EPTLQALRG-SNIELMLGVANGDIQALSDPSAASSWVQNNILAF 104 (336)
Q Consensus 52 ~~~VRlY--~~d-~~vl~A~~~-~gikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~~ 104 (336)
|++.|-| +.. +-+-+|+++ .-.||.|+.-...- .+.+.+.-.+.+..++...
T Consensus 51 idTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~-~~~~~edm~r~fneqLekl 106 (391)
T COG1453 51 IDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSW-PVKDREDMERIFNEQLEKL 106 (391)
T ss_pred EeecccccCCCchHHHHHHhhhcccceEEEEeecCCc-cccCHHHHHHHHHHHHHHh
Confidence 4566778 444 466778864 56788887664320 1223444445566666544
No 84
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=26.57 E-value=3e+02 Score=26.27 Aligned_cols=96 Identities=19% Similarity=0.300 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcCCcceeecCCCccccCCCCc
Q 048190 130 LPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFSYIGDTKD 209 (336)
Q Consensus 130 ~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~~~~~p~~ 209 (336)
-.+.++++.++++.|+-+ +++.... ..+.|+ .+.+.++..++++.+-|+.+|.=+......-
T Consensus 112 ~~a~~E~er~v~~~gf~g-~~l~p~~------~~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~--- 173 (293)
T COG2159 112 EAAAEELERRVRELGFVG-VKLHPVA------QGFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGGAGL--- 173 (293)
T ss_pred HHHHHHHHHHHHhcCceE-EEecccc------cCCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCCccc---
Confidence 446778888888877733 5543221 111121 2447788999999999999966555442111
Q ss_pred ccccccccccCCccccCCCCcchhhHHHHHHHHHHHHHHhCCCCccEEEeccc--cCCCCC
Q 048190 210 IRLDYALFTSQGTPVQDGSLGYQNLFDASLDALYSALEKAGVPDLEVVVSETG--WPSEGG 268 (336)
Q Consensus 210 ~~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETG--WPs~G~ 268 (336)
... .. .. .++|-+ +++ +++.+||+++.| +|..-.
T Consensus 174 ---~~~--~~------------~p---~~~~~v---a~~--fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 174 ---EKG--HS------------DP---LYLDDV---ARK--FPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred ---ccC--CC------------Cc---hHHHHH---HHH--CCCCcEEEEecCCCCchhHH
Confidence 100 00 00 022221 233 789999999999 887644
No 85
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=26.29 E-value=5.6e+02 Score=24.98 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=47.7
Q ss_pred CCeeeEecCCCCCCCChHHHHHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeecCCcCcCCCCHHHHHHHHHHhhhh
Q 048190 24 RPIGVCYGRVANNLPSDQEVVDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILA 103 (336)
Q Consensus 24 ~~~Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~ 103 (336)
+.+|||.-....+ +..++.++.+...+...|=+-.-+|...+.+++.|++|+.-|+. ...|+.+++.
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s--------~~~A~~a~~~---- 122 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS--------PGLLKQFLEN---- 122 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC--------HHHHHHHHHc----
Confidence 4678887544322 23355666666666777766555565568888889998866653 3455554442
Q ss_pred cCCCceEEEEEecccc
Q 048190 104 FTPDVVFRYIAVGNEI 119 (336)
Q Consensus 104 ~~~~~~i~~I~VGNE~ 119 (336)
+.+ ..|+-|.|.
T Consensus 123 --GaD--~vVaqG~EA 134 (320)
T cd04743 123 --GAR--KFIFEGREC 134 (320)
T ss_pred --CCC--EEEEecCcC
Confidence 111 146788886
No 86
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=26.24 E-value=6e+02 Score=25.29 Aligned_cols=137 Identities=12% Similarity=0.219 Sum_probs=72.5
Q ss_pred CChHHHHHHHH---hCCCCEEEEccCC--------------hhHHHHHhcC-CCe-EEEeecCCcCcCCCCHHHHHHHHH
Q 048190 38 PSDQEVVDLYH---ANGITKMRIYDPN--------------EPTLQALRGS-NIE-LMLGVANGDIQALSDPSAASSWVQ 98 (336)
Q Consensus 38 ~s~~~v~~~l~---~~~~~~VRlY~~d--------------~~vl~A~~~~-gik-v~lGv~~~~~~~~a~~~~a~~wv~ 98 (336)
-++++|++.++ ..|++.|.+.+.| .++++++.+. |++ +.++.-. ...+ +.+ ..+.++
T Consensus 168 r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~--p~~i-~~e-ll~~m~ 243 (429)
T TIGR00089 168 RPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSH--PDDV-TDD-LIELIA 243 (429)
T ss_pred CCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCC--hhhc-CHH-HHHHHH
Confidence 35677776544 4688888877522 2466777654 443 3222111 1112 222 223343
Q ss_pred HhhhhcCCCceEEEEEecccccC--------CCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCcc
Q 048190 99 NNILAFTPDVVFRYIAVGNEISP--------SDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGS 170 (336)
Q Consensus 99 ~~v~~~~~~~~i~~I~VGNE~l~--------~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~ 170 (336)
+. + ..+..+.+|=|-.. +..+.++....++.+|+. | ..+.|++..-.+ +|
T Consensus 244 ~~-----~-~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~----~--~~i~i~~~~IvG-----~P----- 301 (429)
T TIGR00089 244 EN-----P-KVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAK----I--PDAAITTDIIVG-----FP----- 301 (429)
T ss_pred hC-----C-CccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHH----C--CCCEEEeeEEEE-----CC-----
Confidence 32 1 13456666655332 145678888888877776 2 235566544322 22
Q ss_pred ccccccccchhhHHHhhhcCCcceeecCCCccc
Q 048190 171 FADDANSYIGPIVQFLKQTGAPLLANVYPYFSY 203 (336)
Q Consensus 171 f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~~ 203 (336)
.+-...+...++|+.+. .+-.+++|+|--.
T Consensus 302 --gET~ed~~~tl~~i~~~-~~~~~~~~~~sp~ 331 (429)
T TIGR00089 302 --GETEEDFEETLDLVEEV-KFDKLHSFIYSPR 331 (429)
T ss_pred --CCCHHHHHHHHHHHHhc-CCCEeeccccCCC
Confidence 11235567788997654 3556788877553
No 87
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.18 E-value=6.8e+02 Score=25.12 Aligned_cols=134 Identities=14% Similarity=0.172 Sum_probs=69.8
Q ss_pred ChHHHHHHH---HhCCCCEEEEccCC-------------hhHHHHHhcC-CC-eEEEeecCCcCcCCCCHHHHHHHHHHh
Q 048190 39 SDQEVVDLY---HANGITKMRIYDPN-------------EPTLQALRGS-NI-ELMLGVANGDIQALSDPSAASSWVQNN 100 (336)
Q Consensus 39 s~~~v~~~l---~~~~~~~VRlY~~d-------------~~vl~A~~~~-gi-kv~lGv~~~~~~~~a~~~~a~~wv~~~ 100 (336)
++++|++.+ ...|++.|.+.+-+ ..+++++.+. |+ .+-++... ...+ +.+.+ +.+++.
T Consensus 176 ~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~--p~~l-~~ell-~~~~~~ 251 (437)
T PRK14331 176 RLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEIDGVERIRFTTGH--PRDL-DEDII-KAMADI 251 (437)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCCCccEEEEeccC--cccC-CHHHH-HHHHcC
Confidence 567776543 34688888886532 2466666543 44 23333211 1122 23322 223321
Q ss_pred hhhcCCCceEEEEEecccc----cC----CCcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCcccc
Q 048190 101 ILAFTPDVVFRYIAVGNEI----SP----SDQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFA 172 (336)
Q Consensus 101 v~~~~~~~~i~~I~VGNE~----l~----~~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~ 172 (336)
+ .....|.+|=|- +. +..+.++...+++.+|+.+. .+.+++..-.+ +|
T Consensus 252 -----~-~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~------gi~i~~d~IvG-----~P------- 307 (437)
T PRK14331 252 -----P-QVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIP------DITFSTDIIVG-----FP------- 307 (437)
T ss_pred -----C-ccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCC------CCEEecCEEEE-----CC-------
Confidence 1 124456666553 22 25578888899988887642 24565543222 22
Q ss_pred ccccccchhhHHHhhhcCCcceeecCCCc
Q 048190 173 DDANSYIGPIVQFLKQTGAPLLANVYPYF 201 (336)
Q Consensus 173 ~~~~~~l~~~vdfl~~~~~~~~vN~yPff 201 (336)
.+-...+.+.++|+.+.. +-.+++|+|-
T Consensus 308 gET~ed~~~tl~~l~~l~-~~~i~~f~~s 335 (437)
T PRK14331 308 TETEEDFEETLDVLKKVE-FEQVFSFKYS 335 (437)
T ss_pred CCCHHHHHHHHHHHHhcC-cceeeeeEec
Confidence 111245677888876543 4457777763
No 88
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=25.93 E-value=4e+02 Score=25.65 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=23.7
Q ss_pred HHHHHHHhCC-CCEEEEcc---------CChhHHHHHhcCCCeEEEeecCC
Q 048190 42 EVVDLYHANG-ITKMRIYD---------PNEPTLQALRGSNIELMLGVANG 82 (336)
Q Consensus 42 ~v~~~l~~~~-~~~VRlY~---------~d~~vl~A~~~~gikv~lGv~~~ 82 (336)
++++.+++.+ +..||+.. .+++.++.++++|..+++++--.
T Consensus 157 ~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~ 207 (321)
T TIGR03822 157 DIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHAN 207 (321)
T ss_pred HHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCC
Confidence 3344444432 56667753 12467777777777777776654
No 89
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.87 E-value=6e+02 Score=26.99 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCCEEEEccC-C--h---hHHHHHhcCCCeEEEeecCCcCcCCCCHHHHHHHHHHhhhhcCCCceEEEEEe
Q 048190 42 EVVDLYHANGITKMRIYDP-N--E---PTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILAFTPDVVFRYIAV 115 (336)
Q Consensus 42 ~v~~~l~~~~~~~VRlY~~-d--~---~vl~A~~~~gikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~~~~~~~i~~I~V 115 (336)
..++.....|++.||+|++ + . ..++++++.|.++...|-....+.. +.+...++++.... . +.+.| .+
T Consensus 101 ~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~-~~~~~~~~a~~l~~-~-Gad~i---~i 174 (593)
T PRK14040 101 RFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVH-TLQTWVDLAKQLED-M-GVDSL---CI 174 (593)
T ss_pred HHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCcc-CHHHHHHHHHHHHH-c-CCCEE---EE
Confidence 3345556689999999975 3 2 4566777889986554432111111 23333344443322 2 22322 11
Q ss_pred cccccCCCcchHHHHHHHHHHHHHH
Q 048190 116 GNEISPSDQAASFVLPAMQNIYNAI 140 (336)
Q Consensus 116 GNE~l~~~~s~~~L~~~i~~vk~~L 140 (336)
- ...+-.+|.++-..++.+|+.+
T Consensus 175 ~--Dt~G~l~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 175 K--DMAGLLKPYAAYELVSRIKKRV 197 (593)
T ss_pred C--CCCCCcCHHHHHHHHHHHHHhc
Confidence 1 1111235677777777777665
No 90
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.79 E-value=1.5e+02 Score=27.14 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=39.7
Q ss_pred EEEEccCC-----hhHHHHHhcCCCeEEEeecCCcCcCCCCHHHHHHHHHHhhhhcCCCceEEEEEecccc
Q 048190 54 KMRIYDPN-----EPTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILAFTPDVVFRYIAVGNEI 119 (336)
Q Consensus 54 ~VRlY~~d-----~~vl~A~~~~gikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~ 119 (336)
.++++++- ..+.++....-+.++|..-.....++ +....|++ +|+.+.+ ..+..+.|||-.
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf---eni~~W~~-~I~e~a~-~~v~~~LvGNK~ 127 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF---ENIRNWIK-NIDEHAS-DDVVKILVGNKC 127 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH---HHHHHHHH-HHHhhCC-CCCcEEEeeccc
Confidence 34455553 36778877766777777666544454 34456775 4777765 478889999985
No 91
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=25.69 E-value=3.4e+02 Score=27.70 Aligned_cols=127 Identities=12% Similarity=0.223 Sum_probs=66.8
Q ss_pred CCeEEEeecCCc--CcCCC-CHHHHHHHHHHhhhhcCCCceEEEEEe--------cccccCC-CcchHHHHHHHHHHHHH
Q 048190 72 NIELMLGVANGD--IQALS-DPSAASSWVQNNILAFTPDVVFRYIAV--------GNEISPS-DQAASFVLPAMQNIYNA 139 (336)
Q Consensus 72 gikv~lGv~~~~--~~~~a-~~~~a~~wv~~~v~~~~~~~~i~~I~V--------GNE~l~~-~~s~~~L~~~i~~vk~~ 139 (336)
.+.+.+|=|... ...++ +.+..+.-++..|+ +.....+.+|=| |++...+ ....+..+..|+++|++
T Consensus 128 k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe-~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny~~Ll~eLR~~ 206 (441)
T COG3325 128 KTLISIGGWSDSGGFSDMAADDASRENFAKSAVE-FMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKK 206 (441)
T ss_pred eEEEeecccccCCCcchhhcCHHHHHHHHHHHHH-HHHhcCCCceeeccccCCCCCCCCCCCCcccHHHHHHHHHHHHHH
Confidence 455666767653 22344 44433333333332 111112444433 4444322 44578889999999999
Q ss_pred HHhcCCCC--CeeEEeeeeccccccccCCCCccccccc-cccchhhHHHhhhcCCcceeecCCCccccCCCCcccccccc
Q 048190 140 IVSANLQD--QIKVSTAIQTSLLGNSYPPSAGSFADDA-NSYIGPIVQFLKQTGAPLLANVYPYFSYIGDTKDIRLDYAL 216 (336)
Q Consensus 140 L~~~g~~~--~i~Vtta~~~~~~~~~~pPS~~~f~~~~-~~~l~~~vdfl~~~~~~~~vN~yPff~~~~~p~~~~~~~a~ 216 (336)
|..+|.+. +...|++-.-.- ..++ .+ ...|.+.|||+ -|=.|=|+-.-.+ .....-+|
T Consensus 207 LD~a~~edgr~Y~LTiA~~as~---------~~l~-~~~~~~~~~~vDyi-------NiMTYDf~G~Wn~--~~Gh~a~L 267 (441)
T COG3325 207 LDKAGVEDGRHYQLTIAAPASK---------DKLE-GLNHAEIAQYVDYI-------NIMTYDFHGAWNE--TLGHHAAL 267 (441)
T ss_pred HhhcccccCceEEEEEecCCch---------hhhh-cccHHHHHHHHhhh-------heeeeeccccccc--cccccccc
Confidence 99999754 566776542211 1122 22 35677888874 3445555543322 23344467
Q ss_pred cc
Q 048190 217 FT 218 (336)
Q Consensus 217 f~ 218 (336)
|.
T Consensus 268 y~ 269 (441)
T COG3325 268 YG 269 (441)
T ss_pred cc
Confidence 75
No 92
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=25.57 E-value=2.6e+02 Score=26.09 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=25.1
Q ss_pred ccEEEeccccCCCCCCCCCHHHHHHHHHHHHHhh
Q 048190 254 LEVVVSETGWPSEGGEAATVDNASTYYKNVINHV 287 (336)
Q Consensus 254 ~~v~I~ETGWPs~G~~~as~~na~~y~~~~~~~~ 287 (336)
.-+.|||+|.+.... ....+.|+.++...++.+
T Consensus 91 ~~~aIGEiGLD~~~~-~~~~~~Q~~vf~~ql~lA 123 (258)
T PRK11449 91 KVVAVGEIGLDLFGD-DPQFERQQWLLDEQLKLA 123 (258)
T ss_pred CEEEEEecccCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 467899999996533 245678888888888876
No 93
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.07 E-value=7.5e+02 Score=25.25 Aligned_cols=89 Identities=13% Similarity=0.127 Sum_probs=48.1
Q ss_pred HHHHHhCCCCEEEEccC-C--h---hHHHHHhcCCCeEEEeecCCcCcCCCCHHHHHHHHHHhhhhcCCCceEEEEEecc
Q 048190 44 VDLYHANGITKMRIYDP-N--E---PTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILAFTPDVVFRYIAVGN 117 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~-d--~---~vl~A~~~~gikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~~~~~~~i~~I~VGN 117 (336)
++.....|++.||+|++ + . ..++.+++.|+++.+.+-....+ ..+.+...+..+... .. +.+. |.+-
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p-~~~~~~~~~~a~~l~-~~-Gad~---I~i~- 174 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSP-VHTIDYFVKLAKEMQ-EM-GADS---ICIK- 174 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCC-CCCHHHHHHHHHHHH-Hc-CCCE---EEEc-
Confidence 34445679999999975 2 2 46667778998877666544322 223444334344332 22 2232 2222
Q ss_pred cccCCCcchHHHHHHHHHHHHHH
Q 048190 118 EISPSDQAASFVLPAMQNIYNAI 140 (336)
Q Consensus 118 E~l~~~~s~~~L~~~i~~vk~~L 140 (336)
...+-.+|.++-..++.+|+.+
T Consensus 175 -Dt~G~l~P~~v~~lv~alk~~~ 196 (448)
T PRK12331 175 -DMAGILTPYVAYELVKRIKEAV 196 (448)
T ss_pred -CCCCCCCHHHHHHHHHHHHHhc
Confidence 1112235666666666666654
No 94
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=24.12 E-value=8.2e+02 Score=25.95 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=49.4
Q ss_pred HHHHHHhCCCCEEEEccC-C--h---hHHHHHhcCCCeEEEeecCCcCcCCCCHHHHHHHHHHhhhhcCCCceEEEEEec
Q 048190 43 VVDLYHANGITKMRIYDP-N--E---PTLQALRGSNIELMLGVANGDIQALSDPSAASSWVQNNILAFTPDVVFRYIAVG 116 (336)
Q Consensus 43 v~~~l~~~~~~~VRlY~~-d--~---~vl~A~~~~gikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~~~~~~~i~~I~VG 116 (336)
.++.....|++.||+|++ + . ..++++++.|..+...+-....+.. +.+...++++..... +.+.| .+-
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~-t~~~~~~~a~~l~~~--Gad~I---~i~ 174 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVH-TIEKYVELAKELEEM--GCDSI---CIK 174 (592)
T ss_pred HHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCC-CHHHHHHHHHHHHHc--CCCEE---EEC
Confidence 344555679999999975 3 2 3455667889998877744332222 344444545544332 22322 222
Q ss_pred ccccCCCcchHHHHHHHHHHHHHH
Q 048190 117 NEISPSDQAASFVLPAMQNIYNAI 140 (336)
Q Consensus 117 NE~l~~~~s~~~L~~~i~~vk~~L 140 (336)
...+-..|.++-..++.+|+.+
T Consensus 175 --Dt~G~~~P~~~~~lv~~lk~~~ 196 (592)
T PRK09282 175 --DMAGLLTPYAAYELVKALKEEV 196 (592)
T ss_pred --CcCCCcCHHHHHHHHHHHHHhC
Confidence 1112235667666666776664
No 95
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=24.03 E-value=2.9e+02 Score=27.12 Aligned_cols=73 Identities=21% Similarity=0.193 Sum_probs=48.6
Q ss_pred hHHHHHhcCC-CeEEEeecCCcCcCCCCHHHHHHHHHHhhhhcCCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHH
Q 048190 63 PTLQALRGSN-IELMLGVANGDIQALSDPSAASSWVQNNILAFTPDVVFRYIAVGNEISPSDQAASFVLPAMQNIYNAIV 141 (336)
Q Consensus 63 ~vl~A~~~~g-ikv~lGv~~~~~~~~a~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~s~~~L~~~i~~vk~~L~ 141 (336)
.||+++-++| +++ +|=.- .+.. +++.|.+|+...+.+++ +.|.+|+--|.-..+ . +-.+|+
T Consensus 176 ~VLkp~idsGkik~-~Ge~~--~d~W-~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag--------G----aI~aL~ 237 (341)
T COG4213 176 KVLKPLIDSGKIKV-VGEQW--TDGW-LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG--------G----AIAALK 237 (341)
T ss_pred HHHHHHhhCCceEE-eeecc--cccc-CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH--------H----HHHHHH
Confidence 6888776665 555 55322 1122 57888899988888775 568888877764321 2 234677
Q ss_pred hcCCCCCeeEEe
Q 048190 142 SANLQDQIKVST 153 (336)
Q Consensus 142 ~~g~~~~i~Vtt 153 (336)
..||++++|||=
T Consensus 238 a~Gl~g~vpVsG 249 (341)
T COG4213 238 AQGLAGKVPVSG 249 (341)
T ss_pred hcccCCCCcccC
Confidence 889998999864
No 96
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.01 E-value=4e+02 Score=26.88 Aligned_cols=62 Identities=8% Similarity=0.112 Sum_probs=36.9
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcCCcceeecCCCcc
Q 048190 123 DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFS 202 (336)
Q Consensus 123 ~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~ 202 (336)
..+.++....++.+|+.+ ..+.+++..-.+ +| .+-...+.+.++|+.+. .+-.+|+++|--
T Consensus 286 ~~t~e~~~~~i~~lr~~~------p~i~i~~d~IvG-----fP-------gET~edf~~tl~~l~~~-~~~~~~~~~~sp 346 (448)
T PRK14333 286 GYTHEKYRRIIDKIREYM------PDASISADAIVG-----FP-------GETEAQFENTLKLVEEI-GFDQLNTAAYSP 346 (448)
T ss_pred CCCHHHHHHHHHHHHHhC------CCcEEEeeEEEE-----CC-------CCCHHHHHHHHHHHHHc-CCCEEeeeeeec
Confidence 346778888888888773 235566544322 22 11134566778887653 444577777755
Q ss_pred c
Q 048190 203 Y 203 (336)
Q Consensus 203 ~ 203 (336)
.
T Consensus 347 ~ 347 (448)
T PRK14333 347 R 347 (448)
T ss_pred C
Confidence 4
No 97
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=23.85 E-value=1.4e+02 Score=28.40 Aligned_cols=78 Identities=15% Similarity=0.314 Sum_probs=40.8
Q ss_pred HHHHhc--CCCeEEEeecCCc----CcCCC-CHHHHHHHHHHhhhhcCCCceEEEEEecccccCC-CcchHHHHHHHHHH
Q 048190 65 LQALRG--SNIELMLGVANGD----IQALS-DPSAASSWVQNNILAFTPDVVFRYIAVGNEISPS-DQAASFVLPAMQNI 136 (336)
Q Consensus 65 l~A~~~--~gikv~lGv~~~~----~~~~a-~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~-~~s~~~L~~~i~~v 136 (336)
+.++++ .++||++.|.... ...+. +.....+.++ ++..+.....+++|-+==|.... ......+..-|+++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 444544 4899999887522 12222 3322222222 22222112245666664343322 12345788899999
Q ss_pred HHHHHhc
Q 048190 137 YNAIVSA 143 (336)
Q Consensus 137 k~~L~~~ 143 (336)
|+.|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999865
No 98
>PRK03941 NTPase; Reviewed
Probab=23.56 E-value=4.7e+02 Score=23.17 Aligned_cols=46 Identities=20% Similarity=0.102 Sum_probs=33.6
Q ss_pred HHHhhhhcCCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHh
Q 048190 97 VQNNILAFTPDVVFRYIAVGNEISPSDQAASFVLPAMQNIYNAIVS 142 (336)
Q Consensus 97 v~~~v~~~~~~~~i~~I~VGNE~l~~~~s~~~L~~~i~~vk~~L~~ 142 (336)
+++.+..++|...|.++.|-+.|=..+.+.+.+..+++..|.++..
T Consensus 16 v~~af~~~~~~~~v~~v~v~SgV~~QP~geET~~GA~nRA~~A~~~ 61 (174)
T PRK03941 16 VENVFGKIFDDVEVVGVEVDSGVPDQPFGEETVKGAINRAKNAYSP 61 (174)
T ss_pred HHHHHHHhCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 5555555566666777777776654455578889999999999985
No 99
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=23.31 E-value=2.2e+02 Score=22.96 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCCCccEEEeccccCCCCCC-CCCHHHHHHHHHHHHHhhcCCCCCC
Q 048190 238 SLDALYSALEKAGVPDLEVVVSETGWPSEGGE-AATVDNASTYYKNVINHVSAGTPKR 294 (336)
Q Consensus 238 ~~da~~~a~~~~g~~~~~v~I~ETGWPs~G~~-~as~~na~~y~~~~~~~~~~gtp~~ 294 (336)
..|+++.-|..++ =|-.|.+ -+|.+.|-..+++.+.....+||.+
T Consensus 38 ~KD~I~q~m~~F~------------dp~~G~pAF~s~~QQ~~mlq~~l~k~~~~t~L~ 83 (120)
T PRK15321 38 LKDSIYQEMNAFK------------DPNSGDSAFVSFEQQTAMLQNMLAKVEPGTHLY 83 (120)
T ss_pred HHHHHHHHHHHhC------------CCCCCCcccccHHHHHHHHHHHHHhcCCCchHH
Confidence 4477777776543 2666776 6899999999999999888777765
No 100
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=23.00 E-value=6.2e+02 Score=23.60 Aligned_cols=53 Identities=11% Similarity=0.279 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccccccchhhHHHhhhcCCcceeecCCCccc
Q 048190 130 LPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDANSYIGPIVQFLKQTGAPLLANVYPYFSY 203 (336)
Q Consensus 130 ~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~~~~l~~~vdfl~~~~~~~~vN~yPff~~ 203 (336)
-.+-.-+...|+..|++ +|-|.+.+ +| |.+..++++|.+++ .-.|++-|+-=-
T Consensus 152 ~~~YacLd~~~~~~~f~-~v~v~~ve-------~y------------P~~d~vi~~l~~~~-~~~v~L~PlMlv 204 (265)
T COG4822 152 NAAYACLDHVLDEYGFD-NVFVAAVE-------GY------------PLVDTVIEYLRKNG-IKEVHLIPLMLV 204 (265)
T ss_pred HHHHHHHHHHHHhcCCC-ceEEEEec-------CC------------CcHHHHHHHHHHcC-CceEEEeeeEEe
Confidence 33444455566777774 46666644 44 46778899986544 446888888653
No 101
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.08 E-value=2.2e+02 Score=25.87 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=38.1
Q ss_pred eeeEecCCCCCCCChHHHHHHHHhCCCCEEEEccC---C-hhHHHHHhcCCCeEEE
Q 048190 26 IGVCYGRVANNLPSDQEVVDLYHANGITKMRIYDP---N-EPTLQALRGSNIELML 77 (336)
Q Consensus 26 ~Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VRlY~~---d-~~vl~A~~~~gikv~l 77 (336)
++||++.....+ +-++.++.++..|++.|-+... + ..+.+.++++||+|..
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 567777555444 6789999999999999998642 2 3566777899999753
No 102
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=21.77 E-value=1.9e+02 Score=23.87 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCEEEEc--c--------CC---hhHHHHHhcCCCeEE
Q 048190 41 QEVVDLYHANGITKMRIY--D--------PN---EPTLQALRGSNIELM 76 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY--~--------~d---~~vl~A~~~~gikv~ 76 (336)
+++.+..+.+|++.|+++ + .- ..+|++++..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 566677778899888777 3 22 478999999999965
No 103
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.72 E-value=7e+02 Score=23.67 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=42.0
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCccccccc--cccchhhHHHhhhcCCcceeecCCC
Q 048190 123 DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGSFADDA--NSYIGPIVQFLKQTGAPLLANVYPY 200 (336)
Q Consensus 123 ~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~f~~~~--~~~l~~~vdfl~~~~~~~~vN~yPf 200 (336)
+.+.++|...++.+|+. | ||+..-..-.-|. ..-|.|+-+- -|.+..+++.|++.+=-+++.+.||
T Consensus 26 ~~s~~~v~~~~~~~~~~----~----iP~d~i~iD~~w~----~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~ 93 (303)
T cd06592 26 DINQETVLNYAQEIIDN----G----FPNGQIEIDDNWE----TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPF 93 (303)
T ss_pred CcCHHHHHHHHHHHHHc----C----CCCCeEEeCCCcc----ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCe
Confidence 34567777766666654 4 4543322111122 2223344322 2668899999999999999999999
Q ss_pred ccc
Q 048190 201 FSY 203 (336)
Q Consensus 201 f~~ 203 (336)
...
T Consensus 94 i~~ 96 (303)
T cd06592 94 INT 96 (303)
T ss_pred eCC
Confidence 873
No 104
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=21.58 E-value=1.6e+02 Score=23.83 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCEEEEc--cCC---hhHHHHHhcCCCeEEEee
Q 048190 41 QEVVDLYHANGITKMRIY--DPN---EPTLQALRGSNIELMLGV 79 (336)
Q Consensus 41 ~~v~~~l~~~~~~~VRlY--~~d---~~vl~A~~~~gikv~lGv 79 (336)
+.+.+.++.++++.|+++ +.. ..+++++..+|++|.-=.
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~ 93 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSIT 93 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEE
Confidence 455566777899988887 333 478999999999965443
No 105
>PRK07198 hypothetical protein; Validated
Probab=21.52 E-value=84 Score=31.61 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=33.1
Q ss_pred HHHHHhCCCCEE-EEccCChhHHHHHhcCCCeEEEeecC
Q 048190 44 VDLYHANGITKM-RIYDPNEPTLQALRGSNIELMLGVAN 81 (336)
Q Consensus 44 ~~~l~~~~~~~V-RlY~~d~~vl~A~~~~gikv~lGv~~ 81 (336)
.+.|+.+|+++| |+.+.++.-+.++.+.||+|.=-++.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 678899999999 99999997888999999999866653
No 106
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=21.40 E-value=1.8e+02 Score=26.24 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=35.0
Q ss_pred HHHHHhCCCCEEEEccCChhHHHHHhcCCCeEEEeecCCc
Q 048190 44 VDLYHANGITKMRIYDPNEPTLQALRGSNIELMLGVANGD 83 (336)
Q Consensus 44 ~~~l~~~~~~~VRlY~~d~~vl~A~~~~gikv~lGv~~~~ 83 (336)
+++|+-.|+++||+-..+|.=..++.+.||+|.--++...
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 5688889999999999999878888999999998888754
No 107
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=20.92 E-value=2.9e+02 Score=24.20 Aligned_cols=77 Identities=21% Similarity=0.228 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhhcCCCceEEEEEecccccCC-CcchHHHHHHHHHHHHHHHhcCCCCCeeEEeeeeccccccccCCCCcc
Q 048190 92 AASSWVQNNILAFTPDVVFRYIAVGNEISPS-DQAASFVLPAMQNIYNAIVSANLQDQIKVSTAIQTSLLGNSYPPSAGS 170 (336)
Q Consensus 92 ~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~-~~s~~~L~~~i~~vk~~L~~~g~~~~i~Vtta~~~~~~~~~~pPS~~~ 170 (336)
...+|+++.+..... ..+..+.+ .=.+++ +......-+.++.+++.++++- -+-+.|++ +..++|
T Consensus 18 ~la~~~~~~l~~~~~-~~~~~~~~-~lP~~~~d~~~~~~p~~v~~~~~~i~~aD---~li~~tPe----Yn~s~p----- 83 (184)
T COG0431 18 ALAEAAAKLLPAGGE-VEVEFDDL-DLPLYNEDLEADGLPPAVQALREAIAAAD---GLIIATPE----YNGSYP----- 83 (184)
T ss_pred HHHHHHHHhhcccCc-eEEEeccc-ccCCCCcchhhccCCHHHHHHHHHHHhCC---EEEEECCc----cCCCCC-----
Confidence 455677776665421 11222222 334444 3323456677888888888764 36688876 444443
Q ss_pred ccccccccchhhHHHhhh
Q 048190 171 FADDANSYIGPIVQFLKQ 188 (336)
Q Consensus 171 f~~~~~~~l~~~vdfl~~ 188 (336)
..+++++|+|..
T Consensus 84 ------g~lKnaiD~l~~ 95 (184)
T COG0431 84 ------GALKNAIDWLSR 95 (184)
T ss_pred ------HHHHHHHHhCCH
Confidence 679999999743
No 108
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.64 E-value=1.4e+02 Score=28.28 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=20.0
Q ss_pred EEEEEecccccCC--Cc----chHHHHHHHHHHHHHHH
Q 048190 110 FRYIAVGNEISPS--DQ----AASFVLPAMQNIYNAIV 141 (336)
Q Consensus 110 i~~I~VGNE~l~~--~~----s~~~L~~~i~~vk~~L~ 141 (336)
=.+|+||+..+-. +. ..+.+...+++++.+++
T Consensus 227 ADGVIVGSAiV~~i~~~~~~~~~~~~~~l~~~l~~~~~ 264 (265)
T COG0159 227 ADGVIVGSAIVKIIEEGLDEEALEELRALVKELKAALR 264 (265)
T ss_pred CCeEEEcHHHHHHHHhccchhhHHHHHHHHHHHHHHhc
Confidence 3489999988753 21 34556666666666553
No 109
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.31 E-value=2.6e+02 Score=22.36 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=22.4
Q ss_pred eeeEecCCCCCCCChHHHHHHHHhCCCCEEEE
Q 048190 26 IGVCYGRVANNLPSDQEVVDLYHANGITKMRI 57 (336)
Q Consensus 26 ~Gi~Y~~~~~~~~s~~~v~~~l~~~~~~~VRl 57 (336)
+-|+-...+...+...++.+.|++.|+..-++
T Consensus 34 vqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 34 VQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred EEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 66666655556677788888999988765433
Done!