BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048192
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
Length = 276
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 23 AVFIVHAYDASLIEYQHTEFPQ-VVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWS 81
A+ +V SL+ +E Q VV+ A + LV DGNLV +GA W+
Sbjct: 136 AIPLVPGAIDSLLLAPGSELVQGVVYGAGASKLV-------FQGDGNLVAYGPNGAATWN 188
Query: 82 TNTSGKSVVGLNLTDMGNLVLFDKNNAAVWQS 113
T GK V GNLV++ NA +W S
Sbjct: 189 AGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHS 220
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 26 IVHAYDASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTNTS 85
+V D +L+ Y W+A + A + DGNLV+ A A+ W ++T
Sbjct: 168 LVFQGDGNLVAYGPNG--AATWNAGTQGKGAVRAVFQ--GDGNLVVYGAGNAVLWHSHTG 223
Query: 86 GKSVVGLNLTDMGNLVLFDKNNAAVWQSF 114
G + L L G++ + D+ VW F
Sbjct: 224 GHASAVLRLQANGSIAILDEK--PVWARF 250
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 31 DASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTNT-SGKSV 89
D +L+ Y H+ VW++N L + L SDGN V+ DA+G W++++ G
Sbjct: 28 DCNLVLYDHS---TSVWASNTGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHSVRGNGN 84
Query: 90 VGLNLTDMGNLVLFDKNNAAVWQS 113
L L + GN+V++ + +W +
Sbjct: 85 YVLVLQEDGNVVIYRSD---IWST 105
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 63 LTSDGNLVLQDADGAIAWSTNTS--GKSVVGLNLTDMGNLVLFDKNNAAVWQS 113
+ D NLVL D ++ W++NT GK L GN V++D ++W S
Sbjct: 25 MQEDCNLVLYDHSTSV-WASNTGILGKKGCRAVLQSDGNFVVYDAEGRSLWAS 76
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 61 LELTSDGNLVLQDADGAIAWSTNTSG-KSVVGLNLTDMGNLVLFDKNNAAVWQS 113
L + D N VL D+ G W++NT G S L L + GNLV++D++N +WQ+
Sbjct: 24 LIMQGDCNFVLYDS-GKPVWASNTGGLGSGCRLTLHNNGNLVIYDQSNRVIWQT 76
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 46 VWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTNTSGK 87
VW++N L L L ++GNLV+ D + W T T+GK
Sbjct: 41 VWASNTGGLGS-GCRLTLHNNGNLVIYDQSNRVIWQTKTNGK 81
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 26 IVHAYDASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTNT- 84
++ D +L+ Y H+ VWS+N + + L SDGN V+ DA+GA W++++
Sbjct: 23 LIMQEDCNLVLYDHS---TAVWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSV 79
Query: 85 SGKSVVGLNLTDMGNLVLF 103
G L L + GN+V++
Sbjct: 80 RGNGNYVLVLQEDGNVVIY 98
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 61 LELTSDGNLVLQDADGAIAWSTNTS--GKSVVGLNLTDMGNLVLFDKNNAAVWQS 113
L + D NLVL D A+ WS+NT GK L GN V++D A++W S
Sbjct: 23 LIMQEDCNLVLYDHSTAV-WSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWAS 76
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 31 DASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTNT-SGKSV 89
D +L+ Y H+ VWS+N + + L SDGN V+ DA+GA W++++ G
Sbjct: 28 DCNLVLYDHS---TAVWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGN 84
Query: 90 VGLNLTDMGNLVLF 103
L L + GN+V++
Sbjct: 85 YVLVLQEDGNVVIY 98
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 31 DASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTNT-SGKSV 89
D +L+ Y H+ VW++N L + L SDGN V+ DA+G W++++ G
Sbjct: 28 DCNLVLYDHS---TSVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGN 84
Query: 90 VGLNLTDMGNLVLF 103
L L + GN+V++
Sbjct: 85 YVLVLQEDGNVVIY 98
>pdb|1XD6|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 36.2 bits (82), Expect = 0.032, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 20 YLFAVFIVHAYDASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIA 79
YLF + D +L+ Y + + VW++ N N L++ DGNLV+ A+
Sbjct: 21 YLF----IMQNDCNLVLYDNN---RAVWASGTNGKAS-NCILKMQRDGNLVIYSGSRAM- 71
Query: 80 WSTNTSGKS-VVGLNLTDMGNLVLFDKNNAAVWQS 113
W++NT+ + L L N+V++D +N A+W S
Sbjct: 72 WASNTNRQDGNYYLILQRDRNVVIYDNSNNAIWAS 106
>pdb|1XD5|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|B Chain B, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|C Chain C, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|D Chain D, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 24 VFIVHAYDASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTN 83
+FI+ D +L+ Y + + VW++ N L++ +DGNLV+ AI W++N
Sbjct: 22 LFIIQN-DCNLVLYDNN---RAVWASGTNGKAS-GCVLKMQNDGNLVIYSGSRAI-WASN 75
Query: 84 TSGKS-VVGLNLTDMGNLVLFDKNNAAVWQS 113
T+ ++ L L N+V++D +N A+W +
Sbjct: 76 TNRQNGNYYLILQRDRNVVIYDNSNNAIWAT 106
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 63 LTSDGNLVLQDADGAIAWSTNTSGKS-VVGLNLTDMGNLVLFDKNNAAVWQS 113
+ D NLVL D D I W+TNT G S L++ GNLV+++ +N +W S
Sbjct: 25 MQEDCNLVLYDVDKPI-WATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWAS 75
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 4 GPTYACGFFCNGTCDSYLFAVFIVHAYDASLIEYQHTEFPQVVWSANRNNLVRINATLEL 63
G T + G F N Y VFI+ D +L+ Y + + +W+ N L R + L +
Sbjct: 7 GETLSTGEFLN-----YGSFVFIMQE-DCNLVLY---DVDKPIWATNTGGLSR-SCFLSM 56
Query: 64 TSDGNLVLQDADGAIAWSTNTSGKS 88
+DGNLV+ + W++NT G++
Sbjct: 57 QTDGNLVVYNPSNKPIWASNTGGQN 81
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 31 DASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTNT-SGKSV 89
D +L+ Y H+ VW++N L + L +DGN V+ DA+G W++++ G
Sbjct: 28 DCNLVLYDHS---TSVWASNTGILGKKGCKAVLQADGNFVVYDAEGRSLWASHSVRGNGN 84
Query: 90 VGLNLTDMGNLVLF 103
L L + GN+V++
Sbjct: 85 YVLVLQEDGNVVIY 98
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 26 IVHAYDASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTNT- 84
++ D +L+ Y H+ VW+ N + + L SDGN V+ DA+G W++++
Sbjct: 23 LIMQEDCNLVLYDHS---TAVWTTNTDIPGKKGCKAVLQSDGNFVVYDAEGRSLWASHSV 79
Query: 85 SGKSVVGLNLTDMGNLVLF 103
G L L + GN+V++
Sbjct: 80 RGNGNYVLVLQEDGNVVIY 98
>pdb|1NPL|A Chain A, Mannose-Specific Agglutinin (Lectin) From Daffodil
(Narcissus Pseudonarcissus) Bulbs In Complex With
Mannose-Alpha1,3-Mannose
pdb|3DZW|A Chain A, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
pdb|3DZW|B Chain B, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
Length = 109
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 63 LTSDGNLVLQDADGAIAWSTNTSG-KSVVGLNLTDMGNLVLFDKNNAAVWQS 113
+ D NLVL D D I W+TNT G L++ GNLV++ N +W S
Sbjct: 25 MQEDCNLVLYDVDKPI-WATNTGGLDRRCHLSMQSDGNLVVYSPRNNPIWAS 75
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 24 VFIVHAYDASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTN 83
VFI+ D +L+ Y + + +W+ N L R L + SDGNLV+ W++N
Sbjct: 22 VFIMQE-DCNLVLY---DVDKPIWATNTGGLDR-RCHLSMQSDGNLVVYSPRNNPIWASN 76
Query: 84 TSGKS 88
T G++
Sbjct: 77 TGGEN 81
>pdb|2DPF|A Chain A, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|B Chain B, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|C Chain C, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|D Chain D, Crystal Structure Of Curculin1 Homodimer
Length = 115
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 60 TLELTSDGNLVLQDADGAIAWSTNTSGK-SVVGLNLTDMGNLVLFDKNNAAVWQS 113
TL + + NLV + +G W++NT + S L L GNLV++D NN VW S
Sbjct: 23 TLTIQNKCNLV-KYQNGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 76
>pdb|2D04|A Chain A, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|C Chain C, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|E Chain E, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|G Chain G, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 113
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 60 TLELTSDGNLVLQDADGAIAWSTNTSGK-SVVGLNLTDMGNLVLFDKNNAAVWQS 113
TL + ++ NLV + G W+++T G+ S L L GNL+++D NN VW S
Sbjct: 22 TLTIQNNCNLV-KYQHGRQIWASDTDGQGSQCRLTLRSDGNLIIYDDNNMVVWGS 75
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 31 DASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTNTSGKS 88
+ +L++YQH + +W+++ + L L SDGNL++ D + + W ++ G +
Sbjct: 28 NCNLVKYQH---GRQIWASDTDGQGS-QCRLTLRSDGNLIIYDDNNMVVWGSDCWGNN 81
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 31 DASLIEYQHTEFPQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTN-TSGKSV 89
D +L+ Y H+ W++N + + L SDGN V+ D+ G W+++ T G
Sbjct: 28 DCNLVLYDHS---TSTWASNTEIGGKSGCSAVLQSDGNFVVYDSSGRSLWASHSTRGSGN 84
Query: 90 VGLNLTDMGNLVLF 103
L L D GN++++
Sbjct: 85 YILILQDDGNVIIY 98
>pdb|1DLP|A Chain A, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|B Chain B, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|C Chain C, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|D Chain D, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|E Chain E, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|F Chain F, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
Length = 236
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 61 LELTSDGNLVLQDADGAIAWSTNTSGKSV-VGLNLTDMGNLVLFDKNNAAVWQS 113
L + +D NLVL D D + WSTNT+GK L G + + N AVW S
Sbjct: 154 LSMETDCNLVLFDRDDRV-WSTNTAGKGTGCRAVLQPNGRMDVLTNQNIAVWTS 206
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 43 PQVVWSANRNNLVRINATLELTSDGNLVLQDADGAIAWSTNTSGKSVVGLNLTDMGNLVL 102
PQ + +A L T++ SD NLVL D+D + W++NT+G + L G LV+
Sbjct: 14 PQTLHAAQSLELSSFRFTMQ--SDCNLVLFDSDVRV-WASNTAGATGCRAVLQSDGLLVI 70
Query: 103 FDKNNAAVWQS 113
N W S
Sbjct: 71 LTAQNTIRWSS 81
>pdb|2D04|B Chain B, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|D Chain D, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|F Chain F, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|H Chain H, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 114
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 60 TLELTSDGNLVLQDADGAIAWSTNTSGK-SVVGLNLTDMGNLVLFDKNNAAVWQS 113
TL + + NLV + +G W++NT + S L L GNLV++D NN VW S
Sbjct: 22 TLTIQNKCNLV-KYQNGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 75
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 91 GLNLTDMGNLVLFDKNNAAVWQSFDHPTDSLVPGQKLLEGKKLTASVSTTNWTDGGLFSL 150
G+++ G +V+ N+A +D +DS +PG + + +S + +DG +F++
Sbjct: 230 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM---SDGRVFTI 286
Query: 151 SVSNKG 156
S+ G
Sbjct: 287 GGSHSG 292
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 91 GLNLTDMGNLVLFDKNNAAVWQSFDHPTDSLVPGQKLLEGKKLTASVSTTNWTDGGLFSL 150
G+++ G +V+ N+A +D +DS +PG + + +S + +DG +F++
Sbjct: 230 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM---SDGRVFTI 286
Query: 151 SVSNKG 156
S G
Sbjct: 287 GGSGSG 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,251,523
Number of Sequences: 62578
Number of extensions: 546720
Number of successful extensions: 1265
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1229
Number of HSP's gapped (non-prelim): 42
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)