BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048194
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 152/561 (27%), Positives = 221/561 (39%), Gaps = 115/561 (20%)
Query: 70 LDLSTESISGGIENAAILF-SLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGF 128
LDLS SISG +L L+ L ++ +G S+ N L +L++S F
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN---LEFLDVSSNNF 212
Query: 129 AGQIPVQISRMARLVALDFSFNQFSG----SISSIRWEHLLNLVCAVLSDNSLDGSIPRS 184
+ IP + + L LD S N+ SG +IS+ LLN+ S N G IP
Sbjct: 213 STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-----SSNQFVGPIPP- 265
Query: 185 MFEFPMLQQLQLANNQFGGSIPRFSNASS---SALDTQIKRVYSCLGL---RTQKLTPXX 238
LQ L LA N+F G IP F + + + LD Y + L
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 239 XXXXXXXGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE-- 296
G + +D +L + L LDLS+N + + + S L L+L+S
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 297 IPNL--KNQSQLQYLYLSENQISREIPNWIWRVS-VVGLHCLNLSHNFLVGF--QAPYSI 351
+PNL ++ LQ LYL N + +IP + S +V LH LS N+L G + S+
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH---LSFNYLSGTIPSSLGSL 441
Query: 352 PALRFIDLISNQLRGNIHQ---------------------LPN------NPIYIDFSNNN 384
LR + L N L G I Q +P+ N +I SNN
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 385 FTSSIPA---------------DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKS---- 425
T IP ++ +G +P L LDLN N GT+P +
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 426 --------IAKCKMLEVLNLGN---------------------NQFSDKFPCSLYD---A 453
IA + + + N G N+ S + PC++
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF 513
T D + +D S N G I +++G + L+ LNL HN ++GSIP
Sbjct: 622 GHTSPTFDNNGSMMF-----LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 514 GNLKRLESLDLSMNNLSRAIP 534
G+L+ L LDLS N L IP
Sbjct: 677 GDLRGLNILDLSSNKLDGRIP 697
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 146/570 (25%), Positives = 238/570 (41%), Gaps = 143/570 (25%)
Query: 44 LMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG------------------IENAA 85
L W + + C + GV C + V +DLS++ ++ G + N+
Sbjct: 30 LPDWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH 88
Query: 86 ILFSLH------YLRSLNLARTSFNGTQIS-SKLANISSLTYLNLSD--AGFAGQIPVQI 136
I S+ L SL+L+R S +G + + L + S L +LN+S F G++ +
Sbjct: 89 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148
Query: 137 SRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQL 196
++ L LD S N SG+ N+V VLSD + L+ L +
Sbjct: 149 -KLNSLEVLDLSANSISGA----------NVVGWVLSDGCGE------------LKHLAI 185
Query: 197 ANNQFGGSIP-------RFSNASSSALDTQIKRVYSCLGLRTQKLTPXXXXXXXXXGTVQ 249
+ N+ G + F + SS+ T I + C L+
Sbjct: 186 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ------------------- 226
Query: 250 LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK-LREIPNLKNQSQLQY 308
LD+S N L+ D SR S L+LLN++S + + IP L +S LQY
Sbjct: 227 -----------HLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQY 273
Query: 309 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY------------------- 349
L L+EN+ + EIP+++ L L+LS N G P+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 350 --------SIPALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFTSSIPADTVNGT 397
+ L+ +DL N+ G + + L + + +D S+NNF+ I
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-------- 384
Query: 398 LPDTF--PRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSL----- 450
LP+ P+N L Q L L N G +P +++ C L L+L N S P SL
Sbjct: 385 LPNLCQNPKNTL-QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 451 -YDAPITIKGLDIKL-QKILNIFT--SIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT 506
D + + L+ ++ Q+++ + T ++ N+ G I + +L ++LS+N LT
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 507 GSIPSSFGNLKRLESLDLSMNNLSRAIPSQ 536
G IP G L+ L L LS N+ S IP++
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 128/465 (27%), Positives = 185/465 (39%), Gaps = 131/465 (28%)
Query: 128 FAGQIPVQ-ISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVL----SDNSLDGSIP 182
F+G++P+ + +M L LD SFN+FSG + E L NL ++L S N+ G I
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELP----ESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 183 RSMFEFP--MLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPXXXX 240
++ + P LQ+L L NN F G IP + S + + Y
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY---------------- 429
Query: 241 XXXXXGTVQLDKILSLGNLAKL-DLS-YNSLAVDESSRNYSFSPMLELLNLASCKLR-EI 297
GT+ SLG+L+KL DL + ++ E + + LE L L L EI
Sbjct: 430 ---LSGTIPS----SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 298 PN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPA--- 353
P+ L N + L ++ LS N+++ EIP WI R+ L L LS+N G +IPA
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE--NLAILKLSNNSFSG-----NIPAELG 535
Query: 354 ----LRFIDLISNQLRGNI--------HQLPNNPI----YIDFSNNNFTS---------- 387
L ++DL +N G I ++ N I Y+ N+
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 388 ------------------SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKC 429
+I + G TF N + LD++ N G +PK I
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 430 KMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDV 489
L +LNLG+N S P ++V
Sbjct: 656 PYLFILNLGHNDISGSIP---------------------------------------DEV 676
Query: 490 GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
G L+ L L+LS N L G IP + L L +DLS NNLS IP
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 130/312 (41%), Gaps = 63/312 (20%)
Query: 90 LHYLRSLNLARTSFNG--TQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDF 147
L Y+++L FN +I S L+N ++L +++LS+ G+IP I R+ L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 148 SFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR 207
S N FSG+I + +L+ L+ N +G+IP +MF+ Q ++A N G R
Sbjct: 522 SNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGK--R 574
Query: 208 FSNASSSALDTQIKRVYSCL---GLRTQKLTPXXXXXXXXXGTVQLDKILSLGNLAKLDL 264
+ + + + + L G+R+++L LS N +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQL-----------------NRLSTRNPCNI-- 615
Query: 265 SYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWI 324
+SR Y P N + +L +S N +S IP I
Sbjct: 616 ---------TSRVYGG--------------HTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 325 WRVSVVGLHCLNLSHNFLVGFQAPYSIPALR---FIDLISNQLRGNIHQLPNNPIY---I 378
S+ L LNL HN + G P + LR +DL SN+L G I Q + I
Sbjct: 653 G--SMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 379 DFSNNNFTSSIP 390
D SNNN + IP
Sbjct: 710 DLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 152/561 (27%), Positives = 221/561 (39%), Gaps = 115/561 (20%)
Query: 70 LDLSTESISGGIENAAILF-SLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGF 128
LDLS SISG +L L+ L ++ +G S+ N L +L++S F
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN---LEFLDVSSNNF 209
Query: 129 AGQIPVQISRMARLVALDFSFNQFSG----SISSIRWEHLLNLVCAVLSDNSLDGSIPRS 184
+ IP + + L LD S N+ SG +IS+ LLN+ S N G IP
Sbjct: 210 STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-----SSNQFVGPIPP- 262
Query: 185 MFEFPMLQQLQLANNQFGGSIPRFSNASS---SALDTQIKRVYSCLGL---RTQKLTPXX 238
LQ L LA N+F G IP F + + + LD Y + L
Sbjct: 263 -LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 321
Query: 239 XXXXXXXGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE-- 296
G + +D +L + L LDLS+N + + + S L L+L+S
Sbjct: 322 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Query: 297 IPNL--KNQSQLQYLYLSENQISREIPNWIWRVS-VVGLHCLNLSHNFLVGF--QAPYSI 351
+PNL ++ LQ LYL N + +IP + S +V LH LS N+L G + S+
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH---LSFNYLSGTIPSSLGSL 438
Query: 352 PALRFIDLISNQLRGNIHQ---------------------LPN------NPIYIDFSNNN 384
LR + L N L G I Q +P+ N +I SNN
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 385 FTSSIPA---------------DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKS---- 425
T IP ++ +G +P L LDLN N GT+P +
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 426 --------IAKCKMLEVLNLGN---------------------NQFSDKFPCSLYD---A 453
IA + + + N G N+ S + PC++
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF 513
T D + +D S N G I +++G + L+ LNL HN ++GSIP
Sbjct: 619 GHTSPTFDNNGSMMF-----LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 514 GNLKRLESLDLSMNNLSRAIP 534
G+L+ L LDLS N L IP
Sbjct: 674 GDLRGLNILDLSSNKLDGRIP 694
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 146/570 (25%), Positives = 238/570 (41%), Gaps = 143/570 (25%)
Query: 44 LMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG------------------IENAA 85
L W + + C + GV C + V +DLS++ ++ G + N+
Sbjct: 27 LPDWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH 85
Query: 86 ILFSLH------YLRSLNLARTSFNGTQIS-SKLANISSLTYLNLSD--AGFAGQIPVQI 136
I S+ L SL+L+R S +G + + L + S L +LN+S F G++ +
Sbjct: 86 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 145
Query: 137 SRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQL 196
++ L LD S N SG+ N+V VLSD + L+ L +
Sbjct: 146 -KLNSLEVLDLSANSISGA----------NVVGWVLSDGCGE------------LKHLAI 182
Query: 197 ANNQFGGSIP-------RFSNASSSALDTQIKRVYSCLGLRTQKLTPXXXXXXXXXGTVQ 249
+ N+ G + F + SS+ T I + C L+
Sbjct: 183 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ------------------- 223
Query: 250 LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK-LREIPNLKNQSQLQY 308
LD+S N L+ D SR S L+LLN++S + + IP L +S LQY
Sbjct: 224 -----------HLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQY 270
Query: 309 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY------------------- 349
L L+EN+ + EIP+++ L L+LS N G P+
Sbjct: 271 LSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 350 --------SIPALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFTSSIPADTVNGT 397
+ L+ +DL N+ G + + L + + +D S+NNF+ I
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-------- 381
Query: 398 LPDTF--PRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSL----- 450
LP+ P+N L Q L L N G +P +++ C L L+L N S P SL
Sbjct: 382 LPNLCQNPKNTL-QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 451 -YDAPITIKGLDIKL-QKILNIFT--SIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT 506
D + + L+ ++ Q+++ + T ++ N+ G I + +L ++LS+N LT
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 507 GSIPSSFGNLKRLESLDLSMNNLSRAIPSQ 536
G IP G L+ L L LS N+ S IP++
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 186/441 (42%), Gaps = 107/441 (24%)
Query: 128 FAGQIPVQ-ISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVL----SDNSLDGSIP 182
F+G++P+ + +M L LD SFN+FSG + E L NL ++L S N+ G I
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELP----ESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 183 RSMFEFP--MLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPXXXX 240
++ + P LQ+L L NN F G IP + S + + Y
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY---------------- 426
Query: 241 XXXXXGTVQLDKILSLGNLAKL-DLS-YNSLAVDESSRNYSFSPMLELLNLASCKLR-EI 297
GT+ SLG+L+KL DL + ++ E + + LE L L L EI
Sbjct: 427 ---LSGTIPS----SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 298 PN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPA--- 353
P+ L N + L ++ LS N+++ EIP WI R+ L L LS+N G +IPA
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE--NLAILKLSNNSFSG-----NIPAELG 532
Query: 354 ----LRFIDLISNQLRGNI--------HQLPNNPI----YIDFSNNNFTS---------- 387
L ++DL +N G I ++ N I Y+ N+
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 388 ------------------SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKC 429
+I + G TF N + LD++ N G +PK I
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 430 KMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDV 489
L +LNLG+N S P + D ++GL+I +D S+N G I + +
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGD----LRGLNI-----------LDLSSNKLDGRIPQAM 697
Query: 490 GLLKSLYGLNLSHNALTGSIP 510
L L ++LS+N L+G IP
Sbjct: 698 SALTMLTEIDLSNNNLSGPIP 718
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 130/312 (41%), Gaps = 63/312 (20%)
Query: 90 LHYLRSLNLARTSFNG--TQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDF 147
L Y+++L FN +I S L+N ++L +++LS+ G+IP I R+ L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 148 SFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR 207
S N FSG+I + +L+ L+ N +G+IP +MF+ Q ++A N G R
Sbjct: 519 SNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGK--R 571
Query: 208 FSNASSSALDTQIKRVYSCL---GLRTQKLTPXXXXXXXXXGTVQLDKILSLGNLAKLDL 264
+ + + + + L G+R+++L LS N +
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQL-----------------NRLSTRNPCNI-- 612
Query: 265 SYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWI 324
+SR Y P N + +L +S N +S IP I
Sbjct: 613 ---------TSRVYGG--------------HTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 325 WRVSVVGLHCLNLSHNFLVGFQAPYSIPALR---FIDLISNQLRGNIHQLPNNPIY---I 378
S+ L LNL HN + G P + LR +DL SN+L G I Q + I
Sbjct: 650 G--SMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 379 DFSNNNFTSSIP 390
D SNNN + IP
Sbjct: 707 DLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 8/188 (4%)
Query: 37 DPSSSVKLMQWRQSTDCCD--WSGVDCD---EAGHVIGLDLSTESISGGIENAAILFSLH 91
D + L W +TDCC+ W GV CD + V LDLS ++ + L +L
Sbjct: 17 DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76
Query: 92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQ 151
YL L + + I +A ++ L YL ++ +G IP +S++ LV LDFS+N
Sbjct: 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 152 FSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPML-QQLQLANNQFGGSI-PRFS 209
SG++ L NLV N + G+IP S F L + ++ N+ G I P F+
Sbjct: 137 LSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 210 NASSSALD 217
N + + +D
Sbjct: 196 NLNLAFVD 203
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 48/238 (20%)
Query: 298 PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFI 357
P + +QL YLY++ +S IP+++ ++ L L+ S+N L G P
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT--LVTLDFSYNALSGTLPP--------- 143
Query: 358 DLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPR-NCLLQTLDLNGN 416
+I LPN + I F N ++G +PD++ + L ++ ++ N
Sbjct: 144 ---------SISSLPN-LVGITFDGNR---------ISGAIPDSYGSFSKLFTSMTISRN 184
Query: 417 RPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF 476
R G +P + A L ++L N DA + + G D QKI S+ F
Sbjct: 185 RLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASV-LFGSDKNTQKIHLAKNSLAF 235
Query: 477 STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
L VGL K+L GL+L +N + G++P LK L SL++S NNL IP
Sbjct: 236 D--------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 479 NNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
NN GPI + L L+ L ++H ++G+IP +K L +LD S N LS +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 288 NLASCKLREIPNLKNQ--SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL--V 343
N+ SC +++PN+ S L LS N +SR W + LH L LSHN L +
Sbjct: 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHLNFI 79
Query: 344 GFQAPYSIPALRFIDLISNQLR 365
+A +P LR++DL SN L
Sbjct: 80 SSEAFVPVPNLRYLDLSSNHLH 101
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 251 DKILSLGNLAKLDLSYNSL-AVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQ 305
+ + + NL LDLS N L +DE + FS + LE+L L + + + ++ +Q
Sbjct: 82 EAFVPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137
Query: 306 LQYLYLSENQISR 318
LQ LYLS+NQISR
Sbjct: 138 LQKLYLSQNQISR 150
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 37/271 (13%)
Query: 284 LELLNLASCKLREIPNLKNQ--SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
+E LNL + +I + Q +QLQ L L+ + + +P+ + ++++ L+++H
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHL-KGLPSGMKGLNLLKKLVLSVNH-- 309
Query: 342 LVGFQAPYSIPALRFIDLISNQLRGNIHQLP---------NNPIYIDFSNNNFTSSIPAD 392
F I A F L +RGN+ +L N +D S+N+ +S D
Sbjct: 310 ---FDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS---D 363
Query: 393 TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCS--- 449
+ L + LQTL+L+ N P G ++ +C LE+L+L + P S
Sbjct: 364 CCSLQLKNLSH----LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQ 419
Query: 450 ----LYDAPITIKGLDIKLQKILN---IFTSIDFSTNNFKGPILEDVGLLK---SLYGLN 499
L +T LD Q +L + ++ N+F+ + LL+ SL L
Sbjct: 420 NLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLI 479
Query: 500 LSHNALTGSIPSSFGNLKRLESLDLSMNNLS 530
LS L +F +L ++ +DLS N+L+
Sbjct: 480 LSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT 510
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 93 LRSLNLARTSFNGTQISS-KLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQ 151
L++L+L+ + S +L N+S L LNLS G +L LD +F +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 152 FSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNA 211
+ +++L L L+ LD S + P+L+ L L N F +N
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNL 468
Query: 212 SSSALDTQIKRVYSCLGLRTQKLTPXXXXXXXXXGTVQLDK--ILSLGNLAKLDLSYNSL 269
+ ++ + SC G + +D+ SLG ++ +DLS+NSL
Sbjct: 469 LQTVGSLEVLILSSC-------------------GLLSIDQQAFHSLGKMSHVDLSHNSL 509
Query: 270 AVD 272
D
Sbjct: 510 TCD 512
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 256 LGNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIP-NLKNQSQLQYLYLSE 313
L NLAKL LS+NS+ AVD S + +P L L+L + KL ++P L + +Q +YL
Sbjct: 215 LNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272
Query: 314 NQIS 317
N IS
Sbjct: 273 NNIS 276
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 256 LGNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIP-NLKNQSQLQYLYLSE 313
L NLAKL LS+NS+ AVD S + +P L L+L + KL ++P L + +Q +YL
Sbjct: 215 LNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272
Query: 314 NQIS 317
N IS
Sbjct: 273 NNIS 276
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG-SIPSSFGNLKRLESL 522
LQK++ + T++ S NF +G LK+L LN++HN + +P F NL LE L
Sbjct: 104 LQKLVAVETNLA-SLENFP------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 523 DLSMNNL 529
DLS N +
Sbjct: 157 DLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG-SIPSSFGNLKRLESL 522
LQK++ + T++ S NF +G LK+L LN++HN + +P F NL LE L
Sbjct: 103 LQKLVAVETNLA-SLENFP------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 523 DLSMNNL 529
DLS N +
Sbjct: 156 DLSSNKI 162
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG-SIPSSFGNLKRLESL 522
LQK++ + T++ S NF +G LK+L LN++HN + +P F NL LE L
Sbjct: 103 LQKLVAVETNLA-SLENFP------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 523 DLSMNNL 529
DLS N +
Sbjct: 156 DLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG-SIPSSFGNLKRLESL 522
LQK++ + T++ S NF +G LK+L LN++HN + +P F NL LE L
Sbjct: 102 LQKLVAVETNLA-SLENFP------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 523 DLSMNNL 529
DLS N +
Sbjct: 155 DLSSNKI 161
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 115/295 (38%), Gaps = 55/295 (18%)
Query: 249 QLDKILSLGNLAKL-DLSYNSLAVDESSRNYSFSPMLELLNLASCKL-----REIPNLKN 302
QL I L NL KL D+ N+ + + +P+ L NL L +I LKN
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIAD------ITPLANLTNLTGLTLFNNQITDIDPLKN 127
Query: 303 QSQLQYLYLSENQISREIPNWIWRVS-VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS 361
+ L L LS N IS I +S + L LN S N + + ++ L +D+ S
Sbjct: 128 LTNLNRLELSSNTISD-----ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISS 182
Query: 362 NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL--LQTLDLNGNRPQ 419
N++ I + N S I N + D P L L L LNGN+ +
Sbjct: 183 NKVSD---------ISVLAKLTNLESLIAT---NNQISDITPLGILTNLDELSLNGNQLK 230
Query: 420 GTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479
++A L L+L NNQ S+ P S L K+ T + N
Sbjct: 231 DI--GTLASLTNLTDLDLANNQISNLAPLS-------------GLTKL----TELKLGAN 271
Query: 480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
+ + L +L L L+ N L P NLK L L L NN+S P
Sbjct: 272 QISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 106/262 (40%), Gaps = 59/262 (22%)
Query: 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
L +N ++ +L +I LKN ++L + ++ NQI+ P ++ L L L +N +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQIT 120
Query: 344 GFQAPYSIPALRFIDLISNQLRG--------NIHQLPNNPIYIDFSNNNFTSSIPADTVN 395
++ L ++L SN + ++ QL +FS+N T P +
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL-------NFSSNQVTDLKPLANL- 172
Query: 396 GTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPI 455
L+ LD++ N+ +AK LE L NNQ SD P
Sbjct: 173 ----------TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-------- 212
Query: 456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG---LNLSHNALTGSIPSS 512
L I T++D + G L+D+G L SL L+L++N ++ P
Sbjct: 213 ------------LGILTNLDELS--LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-- 256
Query: 513 FGNLKRLESLDLSMNNLSRAIP 534
L +L L L N +S P
Sbjct: 257 LSGLTKLTELKLGANQISNISP 278
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 61/160 (38%), Gaps = 38/160 (23%)
Query: 373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLD--LNGNRPQGTVPKSIAKCK 430
NN I+FSNN T D P L + +D +N N+ P +A
Sbjct: 63 NNLTQINFSNNQLT-------------DITPLKNLTKLVDILMNNNQIADITP--LANLT 107
Query: 431 MLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVG 490
L L L NNQ +D P K L ++ S+N + +
Sbjct: 108 NLTGLTLFNNQITDIDPL-----------------KNLTNLNRLELSSNTISD--ISALS 148
Query: 491 LLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS 530
L SL LN S N +T P NL LE LD+S N +S
Sbjct: 149 GLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG-SIPSSFGNLKRLESL 522
LQK++ + T++ S NF +G LK+L LN++HN + +P F NL LE L
Sbjct: 104 LQKLVALETNLA-SLENFP------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 523 DLSMNNL 529
DLS N +
Sbjct: 157 DLSSNKI 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG-SIPSSFGNLKRLESL 522
LQK++ + T++ S NF +G LK+L LN++HN + +P F NL LE L
Sbjct: 126 LQKLVAVETNLA-SLENFP------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178
Query: 523 DLSMNNL 529
DLS N +
Sbjct: 179 DLSSNKI 185
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 58/269 (21%)
Query: 250 LDKILSLGNLAKLDLSYNSLAVD-ESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQY 308
LD I+ L N S++ ++V E +++S++ + L L +CK + P LK +S L+
Sbjct: 295 LDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKR 353
Query: 309 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL----VGFQAPYSIPALRFIDLISNQL 364
L + N+ N V + L L+LS N L Q+ + +L+++DL N +
Sbjct: 354 LTFTSNKGG----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV 409
Query: 365 -------------------RGNIHQLPN--------NPIYIDFSNN----------NFTS 387
N+ Q+ N IY+D S+ N S
Sbjct: 410 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469
Query: 388 SIPADTVNGT------LPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQ 441
S+ + G LPD F L LDL+ + + P + L+VLN+ +N
Sbjct: 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 442 FS--DKFPCSLYDAPITIKGLDIKLQKIL 468
F D FP Y +++ LD L I+
Sbjct: 530 FFSLDTFP---YKCLNSLQVLDYSLNHIM 555
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG-SIPSSFGNLKRLESL 522
LQK++ + T++ S NF +G LK+L LN++HN + +P F NL LE L
Sbjct: 102 LQKLVAVETNLA-SLENFP------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 523 DLSMNNL 529
DLS N +
Sbjct: 155 DLSSNKI 161
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 58/269 (21%)
Query: 250 LDKILSLGNLAKLDLSYNSLAVD-ESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQY 308
LD I+ L N S++ ++V E +++S++ + L L +CK + P LK +S L+
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKR 329
Query: 309 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL----VGFQAPYSIPALRFIDLISNQL 364
L + N+ N V + L L+LS N L Q+ + +L+++DL N +
Sbjct: 330 LTFTSNKGG----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 365 -------------------RGNIHQLPN--------NPIYIDFSNN----------NFTS 387
N+ Q+ N IY+D S+ N S
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 388 SIPADTVNGT------LPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQ 441
S+ + G LPD F L LDL+ + + P + L+VLN+ +N
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 442 FS--DKFPCSLYDAPITIKGLDIKLQKIL 468
F D FP Y +++ LD L I+
Sbjct: 506 FFSLDTFP---YKCLNSLQVLDYSLNHIM 531
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG-SIPSSFGNLKRLESL 522
LQK++ + T++ S NF +G LK+L LN++HN + +P F NL LE L
Sbjct: 102 LQKLVAVETNLA-SLENFP------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 523 DLSMNNL 529
DLS N +
Sbjct: 155 DLSSNKI 161
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 54/259 (20%)
Query: 250 LDKILSLGNLAKLDLSYNSLAVD-ESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQY 308
LD I+ L N S++ ++V E +++S++ + L L +CK + P LK +S L+
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKR 329
Query: 309 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL----VGFQAPYSIPALRFIDLISNQL 364
L + N+ N V + L L+LS N L Q+ + +L+++DL N +
Sbjct: 330 LTFTSNKGG----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 365 -------------------RGNIHQLPN--------NPIYIDFSNN----------NFTS 387
N+ Q+ N IY+D S+ N S
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 388 SIPADTVNGT------LPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQ 441
S+ + G LPD F L LDL+ + + P + L+VLN+ +NQ
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 442 FSDKFPCSLYDAPITIKGL 460
P ++D +++ +
Sbjct: 506 LK-SVPDGIFDRLTSLQKI 523
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Query: 85 AILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144
I L L L +A SF + + +LT+L+LS P + ++ L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPR 183
L+ + NQ I ++ L +L L N D S PR
Sbjct: 499 LNMASNQLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 384 NFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS 443
N +S+I DT+ LP PR ++ LDL+ N+ + ++PK + K + L+ LN+ +NQ
Sbjct: 405 NMSSNILTDTIFRCLP---PR---IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457
Query: 444 DKFPCSLYD 452
P ++D
Sbjct: 458 S-VPDGIFD 465
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 37/288 (12%)
Query: 254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSE 313
+S+ +A L+LS ++++ +Y S + KL+ P L N + L + +
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSIL--------AKLQTNPKLSNLT-LNNIETTW 234
Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQA-PYSIPALRFIDLISNQLRGNIHQLP 372
N R I +W +V N+ + F+ YS +L+ + + +Q+ ++ P
Sbjct: 235 NSFIR-ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI--HQVVSDVFGFP 291
Query: 373 NNPIYIDFSN---NNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKC 429
+ IY FSN NFT S V+ P LD + N TV ++
Sbjct: 292 QSYIYEIFSNMNIKNFTVS-GTRMVHMLCPSKISP---FLHLDFSNNLLTDTVFENCGHL 347
Query: 430 KMLEVLNLGNNQFSDKFPCSLYDAPI-TIKGLDIKLQKILNIFTSIDFSTNNFKGPILED 488
LE L L NQ + + + +++ LDI + S + KG D
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV---------SYDEKKG----D 394
Query: 489 VGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQ 536
KSL LN+S N LT +I R++ LDL N + ++IP Q
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQ 439
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSE 313
L LG L +L SY S E N L LNLA C LREIPNL +L L LS
Sbjct: 165 LDLGELKRL--SYISEGAFEGLSN------LRYLNLAMCNLREIPNLTPLIKLDELDLSG 216
Query: 314 NQISREIP 321
N +S P
Sbjct: 217 NHLSAIRP 224
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 115/295 (38%), Gaps = 55/295 (18%)
Query: 249 QLDKILSLGNLAKL-DLSYNSLAVDESSRNYSFSPMLELLNLASCKL-----REIPNLKN 302
QL I L NL KL D+ N+ + + +P+ L NL L +I LKN
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIAD------ITPLANLTNLTGLTLFNNQITDIDPLKN 127
Query: 303 QSQLQYLYLSENQISREIPNWIWRVS-VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS 361
+ L L LS N IS I +S + L L+ S N + + ++ L +D+ S
Sbjct: 128 LTNLNRLELSSNTISD-----ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISS 182
Query: 362 NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL--LQTLDLNGNRPQ 419
N++ I + N S I N + D P L L L LNGN+ +
Sbjct: 183 NKVSD---------ISVLAKLTNLESLIAT---NNQISDITPLGILTNLDELSLNGNQLK 230
Query: 420 GTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479
++A L L+L NNQ S+ P S L K+ T + N
Sbjct: 231 DI--GTLASLTNLTDLDLANNQISNLAPLS-------------GLTKL----TELKLGAN 271
Query: 480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
+ + L +L L L+ N L P NLK L L L NN+S P
Sbjct: 272 QISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 59/262 (22%)
Query: 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
L +N ++ +L +I LKN ++L + ++ NQI+ P ++ L L L +N +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQIT 120
Query: 344 GFQAPYSIPALRFIDLISNQLRG--------NIHQLPNNPIYIDFSNNNFTSSIPADTVN 395
++ L ++L SN + ++ QL FS+N T P +
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL-------SFSSNQVTDLKPLANL- 172
Query: 396 GTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPI 455
L+ LD++ N+ +AK LE L NNQ SD P
Sbjct: 173 ----------TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-------- 212
Query: 456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG---LNLSHNALTGSIPSS 512
L I T++D + G L+D+G L SL L+L++N ++ P
Sbjct: 213 ------------LGILTNLDELS--LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-- 256
Query: 513 FGNLKRLESLDLSMNNLSRAIP 534
L +L L L N +S P
Sbjct: 257 LSGLTKLTELKLGANQISNISP 278
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 115/295 (38%), Gaps = 55/295 (18%)
Query: 249 QLDKILSLGNLAKL-DLSYNSLAVDESSRNYSFSPMLELLNLASCKL-----REIPNLKN 302
QL I L NL KL D+ N+ + + +P+ L NL L +I LKN
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIAD------ITPLANLTNLTGLTLFNNQITDIDPLKN 127
Query: 303 QSQLQYLYLSENQISREIPNWIWRVS-VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS 361
+ L L LS N IS I +S + L L+ S N + + ++ L +D+ S
Sbjct: 128 LTNLNRLELSSNTISD-----ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISS 182
Query: 362 NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL--LQTLDLNGNRPQ 419
N++ I + N S I N + D P L L L LNGN+ +
Sbjct: 183 NKVSD---------ISVLAKLTNLESLIAT---NNQISDITPLGILTNLDELSLNGNQLK 230
Query: 420 GTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479
++A L L+L NNQ S+ P S L K+ T + N
Sbjct: 231 DI--GTLASLTNLTDLDLANNQISNLAPLS-------------GLTKL----TELKLGAN 271
Query: 480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
+ + L +L L L+ N L P NLK L L L NN+S P
Sbjct: 272 QISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 104/262 (39%), Gaps = 59/262 (22%)
Query: 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
L +N ++ +L +I LKN ++L + ++ NQI+ P ++ L L L +N +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQIT 120
Query: 344 GFQAPYSIPALRFIDLISNQLRG--------NIHQLPNNPIYIDFSNNNFTSSIPADTVN 395
++ L ++L SN + ++ QL FS+N T P
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL-------SFSSNQVTDLKP----- 168
Query: 396 GTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPI 455
L+ LD++ N+ +AK LE L NNQ SD P
Sbjct: 169 ------LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-------- 212
Query: 456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG---LNLSHNALTGSIPSS 512
L I T++D + G L+D+G L SL L+L++N ++ P
Sbjct: 213 ------------LGILTNLDELS--LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-- 256
Query: 513 FGNLKRLESLDLSMNNLSRAIP 534
L +L L L N +S P
Sbjct: 257 LSGLTKLTELKLGANQISNISP 278
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 85 AILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144
A L L LNL R Q+ L + +L +LS +P+ + L
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 145 LDFSFNQFSG-SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQF 201
LD SFN+ + + ++R L L L N L P + P L++L LANNQ
Sbjct: 105 LDVSFNRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNI---HQLPNNPIYIDFSNNNFTSSIPA 391
LNL L Q ++P L +DL NQL+ LP + +D S N TS +P
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV-LDVSFNRLTS-LPL 117
Query: 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD 444
+ G LQ L L GN + P + LE L+L NNQ ++
Sbjct: 118 GALRGL--------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 85 AILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144
A L L LNL R Q+ L + +L +LS +P+ + L
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 145 LDFSFNQFSG-SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQF 201
LD SFN+ + + ++R L L L N L P + P L++L LANNQ
Sbjct: 105 LDVSFNRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNI---HQLPNNPIYIDFSNNNFTSSIPA 391
LNL L Q ++P L +DL NQL+ LP + +D S N TS +P
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV-LDVSFNRLTS-LPL 117
Query: 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD 444
+ G LQ L L GN + P + LE L+L NNQ ++
Sbjct: 118 GALRGL--------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 85 AILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144
A L L LNL R Q+ L + +L +LS +P+ + L
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 145 LDFSFNQFSG-SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQF 201
LD SFN+ + + ++R L L L N L P + P L++L LANNQ
Sbjct: 105 LDVSFNRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNI---HQLPNNPIYIDFSNNNFTSSIPA 391
LNL L Q ++P L +DL NQL+ LP + +D S N TS +P
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV-LDVSFNRLTS-LPL 117
Query: 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD 444
+ G LQ L L GN + P + LE L+L NNQ ++
Sbjct: 118 GALRGL--------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 85 AILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144
A L L LNL R Q+ L + +L +LS +P+ + L
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 145 LDFSFNQFSG-SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQF 201
LD SFN+ + + ++R L L L N L P + P L++L LANNQ
Sbjct: 105 LDVSFNRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNI---HQLPNNPIYIDFSNNNFTSSIPA 391
LNL L Q ++P L +DL NQL+ LP + +D S N TS +P
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV-LDVSFNRLTS-LPL 117
Query: 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD 444
+ G LQ L L GN + P + LE L+L NNQ ++
Sbjct: 118 GALRGL--------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 259 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI-PNL-KNQSQLQYLYLSENQI 316
L +LDLS N+ + L L+L C L+E+ P L + + LQYLYL +N +
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 317 SREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS 361
+ +P+ +R +G NL+H FL G + P S+P F L S
Sbjct: 141 -QALPDNTFR--DLG----NLTHLFLHGNRIP-SVPEHAFRGLHS 177
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 416 NRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNI----- 470
+R + T ++ K M+E + FS + S++ A + IK L I +++
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTPFIHMVCPPS 351
Query: 471 ---FTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF--GNLKRLESLDLS 525
FT ++F+ N F + + LK L L L N L + N+ LE+LD+S
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 526 MNNL 529
+N+L
Sbjct: 412 LNSL 415
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 49/244 (20%)
Query: 306 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN----FLVGFQAPYSIPALRFIDLIS 361
++YL + I+ I + S L L + H FL +A YS+ A I ++S
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337
Query: 362 NQLRGNIHQL----PNNPIYIDFSNNNFTSSI--PADTVNGTLPDTFPRNCL-------- 407
IH + P++ +++F+ N FT S+ T+ RN L
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397
Query: 408 -------LQTLDLNGNRPQG-TVPKSIAKCKMLEVLNLGNNQFSDK-FPCSLYDAPITIK 458
L+TLD++ N ++ A + + VLNL +N + F C P +K
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC----LPPKVK 453
Query: 459 GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKR 518
LD+ +I++I P +DV L++L LN++ N L S+P G R
Sbjct: 454 VLDLHNNRIMSI-------------P--KDVTHLQALQELNVASNQL-KSVPD--GVFDR 495
Query: 519 LESL 522
L SL
Sbjct: 496 LTSL 499
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 49/127 (38%), Gaps = 30/127 (23%)
Query: 252 KILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL 311
+ L LG L +L+ Y S A E N L LNL C L++IPNL +L+ L L
Sbjct: 134 RRLDLGELKRLE--YISEAAFEGLVN------LRYLNLGMCNLKDIPNLTALVRLEELEL 185
Query: 312 SENQISREIPN-----------WIWRVSVV-----------GLHCLNLSHNFLVGFQAPY 349
S N++ P W+ V L LNLSHN L+
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
Query: 350 SIPALRF 356
P R
Sbjct: 246 FTPLHRL 252
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQI R +P + L L LS N
Sbjct: 132 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVP----LARLTKLQNLYLSKNH 187
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 188 ISDLRALRGLKNLDVLELFSQE 209
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 27/158 (17%)
Query: 404 RNCLLQTLDLNGNRPQGTVPK----SIAKCKMLEVLNLGNNQFSDKFPCSLYDAP--ITI 457
+N + TLDL+GN + ++ K +IA K+ ++ + F + + P T
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 458 KGL--------DIKLQKILNIFTSIDFSTNNFKGPILEDVGL----------LKSLYGLN 499
KGL D+ KI + S+ + + L + L L LN
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 500 LSHNALTGSIPSS-FGNLKRLESLDLSMNNLSRAIPSQ 536
LS N L GSI S F NL +LE LDLS N++ RA+ Q
Sbjct: 330 LSQNFL-GSIDSRMFENLDKLEVLDLSYNHI-RALGDQ 365
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 189
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 190 ISDLRALAGLKNLDVLELFSQE 211
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 131 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 186
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 187 ISDLRALAGLKNLDVLELFSQE 208
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Query: 395 NGTLPD---TFPRNCLLQTLDL--NGNRPQGT---VPKSIAKCKMLEVLNLGNNQFS 443
NG++ + TF + LL T+ + NG RP+G + + +A C+ L+VL+L +N F+
Sbjct: 172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 228
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Query: 395 NGTLPD---TFPRNCLLQTLDL--NGNRPQGT---VPKSIAKCKMLEVLNLGNNQFS 443
NG++ + TF + LL T+ + NG RP+G + + +A C+ L+VL+L +N F+
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 129 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 184
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 185 ISDLRALAGLKNLDVLELFSQE 206
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 152 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 207
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 208 ISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 152 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 207
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 208 ISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 152 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 207
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 208 ISDLRALAGLKNLDVLELFSQE 229
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 252 KILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL 311
+ L LG L +L+ Y S A E N L LNL C L++IPNL +L+ L L
Sbjct: 134 RRLDLGELKRLE--YISEAAFEGLVN------LRYLNLGMCNLKDIPNLTALVRLEELEL 185
Query: 312 SENQI 316
S N++
Sbjct: 186 SGNRL 190
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 492 LKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMN 527
LKSL LNLSHN L F L RLE + L+ N
Sbjct: 225 LKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 106/289 (36%), Gaps = 67/289 (23%)
Query: 188 FPMLQQLQLANNQFGGSIP-RFSNASSSALDTQIKRVYSCLGLRTQKLTPXXXXXXXXXG 246
FP L++L+L N P F+N + LGLR+ +L
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFN----------LRTLGLRSNRLK----------- 93
Query: 247 TVQLDKILSLGNLAKLDLSYN-----------------SLAVDE------SSRNYSFSPM 283
+ L L NL KLD+S N SL V + S R +S
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 284 LELLNLASCKLREIP-----NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 338
LE L L C L IP +L L+ +L+ N I ++R+ V L +S
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV-----LEIS 208
Query: 339 HNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLP----NNPIYIDFSNNNFTSSIPADTV 394
H + P + L L N+ +P + +Y+ F N ++ P T+
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHC--NLTAVPYLAVRHLVYLRFLNLSYN---PISTI 263
Query: 395 NGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS 443
G++ R LQ + L G + P + L VLN+ NQ +
Sbjct: 264 EGSMLHELLR---LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 189
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 190 ISDLRALAGLKNLDVLELFSQE 211
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 132 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 187
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 188 ISDLRALAGLKNLDVLELFSQE 209
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 154 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 209
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 210 ISDLRALAGLKNLDVLELFSQE 231
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 105/256 (41%), Gaps = 48/256 (18%)
Query: 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
L +N ++ +L +I LKN ++L + ++ NQI+ P ++ L L L +N +
Sbjct: 70 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQIT 125
Query: 344 GFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFP 403
++ L ++L SN + D S + +S+ + + D P
Sbjct: 126 DIDPLKNLTNLNRLELSSNTIS-------------DISALSGLTSLQQLSFGNQVTDLKP 172
Query: 404 RNCL--LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLD 461
L L+ LD++ N+ +AK LE L NNQ SD P
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-------------- 216
Query: 462 IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG---LNLSHNALTGSIPSSFGNLKR 518
L I T++D + G L+D+G L SL L+L++N ++ P L +
Sbjct: 217 ------LGILTNLDELS--LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK 266
Query: 519 LESLDLSMNNLSRAIP 534
L L L N +S P
Sbjct: 267 LTELKLGANQISNISP 282
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 105/256 (41%), Gaps = 48/256 (18%)
Query: 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
L +N ++ +L +I LKN ++L + ++ NQI+ P ++ L L L +N +
Sbjct: 69 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQIT 124
Query: 344 GFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFP 403
++ L ++L SN + D S + +S+ + + D P
Sbjct: 125 DIDPLKNLTNLNRLELSSNTIS-------------DISALSGLTSLQQLSFGNQVTDLKP 171
Query: 404 RNCL--LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLD 461
L L+ LD++ N+ +AK LE L NNQ SD P
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-------------- 215
Query: 462 IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG---LNLSHNALTGSIPSSFGNLKR 518
L I T++D + G L+D+G L SL L+L++N ++ P L +
Sbjct: 216 ------LGILTNLDELS--LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK 265
Query: 519 LESLDLSMNNLSRAIP 534
L L L N +S P
Sbjct: 266 LTELKLGANQISNISP 281
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 120/275 (43%), Gaps = 44/275 (16%)
Query: 255 SLGNLAKLDLSYNSLAVDESSRNY--SFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS 312
SL L +L S SL VD ++ P+LE L +++ +L ++P L+N S L+ + +
Sbjct: 102 SLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 161
Query: 313 ENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLP 372
N + +++P+ + + +N L ++P L I +N L+ +LP
Sbjct: 162 NNSL-KKLPDLPPSLEFIA-----AGNNQLEELPELQNLPFLTAIYADNNSLK----KLP 211
Query: 373 NNPIYID--FSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCK 430
+ P+ ++ + NN +P L + N LL+TL +P S
Sbjct: 212 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL--------PDLPPS----- 258
Query: 431 MLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSID------FSTNNFKGP 484
LE LN+ +N +D L + P ++ LD+ NIF+ + + N
Sbjct: 259 -LEALNVRDNYLTD-----LPELPQSLTFLDVS----ENIFSGLSELPPNLYYLNASSNE 308
Query: 485 ILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRL 519
I L SL LN+S+N L +P+ L+RL
Sbjct: 309 IRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL 342
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 114/295 (38%), Gaps = 56/295 (18%)
Query: 249 QLDKILSLGNLAKL-DLSYNSLAVDESSRNYSFSPMLELLNLASCKL-----REIPNLKN 302
QL I L NL KL D+ N+ + + +P+ L NL L +I LKN
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIAD------ITPLANLTNLTGLTLFNNQITDIDPLKN 127
Query: 303 QSQLQYLYLSENQISREIPNWIWRVS-VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS 361
+ L L LS N IS I +S + L LN N + + ++ L +D+ S
Sbjct: 128 LTNLNRLELSSNTISD-----ISALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISS 181
Query: 362 NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL--LQTLDLNGNRPQ 419
N++ I + N S I N + D P L L L LNGN+ +
Sbjct: 182 NKVSD---------ISVLAKLTNLESLIAT---NNQISDITPLGILTNLDELSLNGNQLK 229
Query: 420 GTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479
++A L L+L NNQ S+ P S L K+ T + N
Sbjct: 230 DI--GTLASLTNLTDLDLANNQISNLAPLS-------------GLTKL----TELKLGAN 270
Query: 480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
+ + L +L L L+ N L P NLK L L L NN+S P
Sbjct: 271 QISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 104/256 (40%), Gaps = 48/256 (18%)
Query: 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
L +N ++ +L +I LKN ++L + ++ NQI+ P ++ L L L +N +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQIT 120
Query: 344 GFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFP 403
++ L ++L SN + D S + +S+ + D P
Sbjct: 121 DIDPLKNLTNLNRLELSSNTIS-------------DISALSGLTSLQQLNFGNQVTDLKP 167
Query: 404 RNCL--LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLD 461
L L+ LD++ N+ +AK LE L NNQ SD P
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-------------- 211
Query: 462 IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG---LNLSHNALTGSIPSSFGNLKR 518
L I T++D + G L+D+G L SL L+L++N ++ P L +
Sbjct: 212 ------LGILTNLDELS--LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK 261
Query: 519 LESLDLSMNNLSRAIP 534
L L L N +S P
Sbjct: 262 LTELKLGANQISNISP 277
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 114/295 (38%), Gaps = 56/295 (18%)
Query: 249 QLDKILSLGNLAKL-DLSYNSLAVDESSRNYSFSPMLELLNLASCKL-----REIPNLKN 302
QL I L NL KL D+ N+ + + +P+ L NL L +I LKN
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIAD------ITPLANLTNLTGLTLFNNQITDIDPLKN 127
Query: 303 QSQLQYLYLSENQISREIPNWIWRVS-VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS 361
+ L L LS N IS I +S + L LN N + + ++ L +D+ S
Sbjct: 128 LTNLNRLELSSNTISD-----ISALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISS 181
Query: 362 NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL--LQTLDLNGNRPQ 419
N++ I + N S I N + D P L L L LNGN+ +
Sbjct: 182 NKVSD---------ISVLAKLTNLESLIAT---NNQISDITPLGILTNLDELSLNGNQLK 229
Query: 420 GTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479
++A L L+L NNQ S+ P S L K+ T + N
Sbjct: 230 DI--GTLASLTNLTDLDLANNQISNLAPLS-------------GLTKL----TELKLGAN 270
Query: 480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
+ + L +L L L+ N L P NLK L L L NN+S P
Sbjct: 271 QISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 104/256 (40%), Gaps = 48/256 (18%)
Query: 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
L +N ++ +L +I LKN ++L + ++ NQI+ P ++ L L L +N +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQIT 120
Query: 344 GFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFP 403
++ L ++L SN + D S + +S+ + D P
Sbjct: 121 DIDPLKNLTNLNRLELSSNTIS-------------DISALSGLTSLQQLNFGNQVTDLKP 167
Query: 404 RNCL--LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLD 461
L L+ LD++ N+ +AK LE L NNQ SD P
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-------------- 211
Query: 462 IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG---LNLSHNALTGSIPSSFGNLKR 518
L I T++D + G L+D+G L SL L+L++N ++ P L +
Sbjct: 212 ------LGILTNLDELS--LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTK 261
Query: 519 LESLDLSMNNLSRAIP 534
L L L N +S P
Sbjct: 262 LTELKLGANQISNISP 277
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 39/164 (23%)
Query: 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI----- 462
LQ L+L+ N P G ++ +C LE+L++ K P S + ++ L++
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 463 -----KLQKILNIFTSIDFSTNNF------KGPILEDVGLL---------------KSLY 496
L L ++ N+F K +L+ VG L ++ +
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 497 GL------NLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
GL +LSHN+LTG + +LK L L+++ NN+ R IP
Sbjct: 497 GLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNI-RIIP 538
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 129 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LACLTKLQNLYLSKNH 184
Query: 342 LVGFQAPYSIPALRFIDLISNQ 363
+ +A + L ++L S +
Sbjct: 185 ISDLRALCGLKNLDVLELFSQE 206
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 28/207 (13%)
Query: 287 LNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVG 344
L L S KL+ +P+ +QL L LS N +S + L L+LS N ++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 345 FQAPY-SIPALRFIDLISNQLRG----NIHQLPNNPIYIDFSNN----------NFTSSI 389
+ + + L +D + L+ ++ N IY+D S+ N SS+
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152
Query: 390 PADTVNGT------LPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS 443
+ G LPD F L LDL+ + + P + L+VLN+ +N F
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 444 --DKFPCSLYDAPITIKGLDIKLQKIL 468
D FP Y +++ LD L I+
Sbjct: 213 SLDTFP---YKCLNSLQVLDYSLNHIM 236
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 27/146 (18%)
Query: 303 QSQLQYLYLSENQISREIPNWI-WRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS 361
+S++QYL L N+I + N+ S L LNL +NF+ + L+ +DL S
Sbjct: 143 RSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200
Query: 362 NQLR--GNIHQLPNNPIYIDFSNNN---------FTSSIPADTVN------GTLPDTFPR 404
N+L G Q +I NN F+ ++ + GTL D F +
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 405 NCLLQTL------DLNG-NRPQGTVP 423
N +QT+ L G N + TVP
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVP 286
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 284 LELLNLASCKLREIPNLKNQSQ-LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL 342
L +L+L +++I NL + L+ L++S NQI+ + +V L L +S+N +
Sbjct: 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIA----SLSGIEKLVNLRVLYMSNNKI 127
Query: 343 VGFQAPYSIPAL-RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTV 394
+ + AL + DL+ L NP+Y D+ NN TS + V
Sbjct: 128 TNWGEIDKLAALDKLEDLL----------LAGNPLYNDYKENNATSEYRIEVV 170
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 27/146 (18%)
Query: 303 QSQLQYLYLSENQISREIPNWI-WRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS 361
+S++QYL L N+I + N+ S L LNL +NF+ + L+ +DL S
Sbjct: 143 RSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200
Query: 362 NQLR--GNIHQLPNNPIYIDFSNNN---------FTSSIPADTVN------GTLPDTFPR 404
N+L G Q +I NN F+ ++ + GTL D F +
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 405 NCLLQTL------DLNG-NRPQGTVP 423
N +QT+ L G N + TVP
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVP 286
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 489 VGLLKSLYGLNLSHNAL-TGSIPSSFGNLKRLESLDLSMN 527
+G L +L LN++HN + + +P+ F NL L +DLS N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 284 LELLNLASCKLREIPNLKNQSQ-LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL 342
L +L+L +++I NL + L+ L++S NQI+ + +V L L +S+N +
Sbjct: 73 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIA----SLSGIEKLVNLRVLYMSNNKI 128
Query: 343 VGFQAPYSIPAL-RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTV 394
+ + AL + DL+ L NP+Y D+ NN TS + V
Sbjct: 129 TNWGEIDKLAALDKLEDLL----------LAGNPLYNDYKENNATSEYRIEVV 171
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 489 VGLLKSLYGLNLSHNAL-TGSIPSSFGNLKRLESLDLSMN 527
+G L +L LN++HN + + +P+ F NL L +DLS N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNI---HQLPNNPIYIDFSNNNFTSSIPA 391
LNL L Q ++P L +DL NQL+ LP + +D S N TS +P
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV-LDVSFNRLTS-LPL 117
Query: 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD 444
+ G LQ L L GN + P + LE L+L NN ++
Sbjct: 118 GALRGL--------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNI---HQLPNNPIYIDFSNNNFTSSIPA 391
LNL L Q ++P L +DL NQL+ LP + +D S N TS +P
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV-LDVSFNRLTS-LPL 117
Query: 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD 444
+ G LQ L L GN + P + LE L+L NN ++
Sbjct: 118 GALRGL--------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,314,669
Number of Sequences: 62578
Number of extensions: 566989
Number of successful extensions: 1640
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1199
Number of HSP's gapped (non-prelim): 273
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)