Query 048194
Match_columns 558
No_of_seqs 397 out of 3939
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.9E-59 6.2E-64 525.8 41.8 527 14-558 21-588 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-47 2.7E-52 431.6 31.2 456 65-552 118-605 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.9E-38 6.3E-43 304.0 9.2 366 92-526 79-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 7.1E-37 1.5E-41 294.5 5.4 361 117-549 79-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.4E-39 7.3E-44 297.5 -13.3 421 67-554 47-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.9E-36 6.3E-41 278.1 -11.5 416 65-530 68-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 8.4E-35 1.8E-39 282.2 -3.4 362 65-530 7-375 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 9.5E-35 2.1E-39 281.8 -3.9 365 88-552 4-373 (1255)
9 KOG0618 Serine/threonine phosp 100.0 1.8E-33 4E-38 284.9 -0.1 416 66-552 46-487 (1081)
10 KOG0618 Serine/threonine phosp 100.0 6.2E-32 1.3E-36 273.9 -6.3 436 66-555 22-466 (1081)
11 PLN03210 Resistant to P. syrin 99.9 3.7E-24 8E-29 241.6 27.5 367 65-528 532-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 4E-23 8.6E-28 233.3 26.9 273 229-552 631-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 1.9E-22 4E-27 211.8 18.7 261 232-557 201-461 (788)
14 KOG4237 Extracellular matrix p 99.9 8.7E-25 1.9E-29 202.2 -2.1 132 65-201 67-200 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 8.1E-22 1.8E-26 207.0 18.0 222 232-511 242-463 (788)
16 PRK15370 E3 ubiquitin-protein 99.9 4.9E-21 1.1E-25 202.5 19.3 353 8-443 49-428 (754)
17 KOG4237 Extracellular matrix p 99.9 6.5E-24 1.4E-28 196.5 -3.3 405 92-551 68-498 (498)
18 PRK15370 E3 ubiquitin-protein 99.8 1.2E-19 2.6E-24 192.0 14.4 246 232-530 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 8.8E-19 1.9E-23 172.5 -0.5 87 232-318 137-235 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.3E-23 171.9 -0.2 288 236-553 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2E-18 4.3E-23 142.2 -3.1 170 296-540 25-195 (264)
22 KOG0617 Ras suppressor protein 99.6 5.7E-18 1.2E-22 139.5 -3.9 140 397-555 47-187 (264)
23 PLN03150 hypothetical protein; 99.5 2E-13 4.3E-18 144.5 14.6 150 17-177 367-527 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 1.5E-13 3.2E-18 134.1 -1.8 103 408-530 145-247 (722)
25 KOG3207 Beta-tubulin folding c 99.2 1.5E-12 3.3E-17 123.3 0.2 90 89-178 119-210 (505)
26 KOG1259 Nischarin, modulator o 99.2 4.2E-12 9.1E-17 114.5 2.1 201 252-506 209-412 (490)
27 COG4886 Leucine-rich repeat (L 99.2 5.8E-11 1.2E-15 120.4 8.9 98 332-440 118-219 (394)
28 PF14580 LRR_9: Leucine-rich r 99.1 4.7E-11 1E-15 103.5 5.7 126 403-548 16-147 (175)
29 KOG0532 Leucine-rich repeat (L 99.1 2.1E-12 4.5E-17 126.3 -3.1 194 281-528 74-271 (722)
30 COG4886 Leucine-rich repeat (L 99.1 1.2E-10 2.6E-15 118.1 7.9 196 235-449 96-296 (394)
31 KOG3207 Beta-tubulin folding c 99.1 1.7E-11 3.6E-16 116.4 0.9 110 254-365 169-284 (505)
32 PLN03150 hypothetical protein; 99.1 1.4E-10 3.1E-15 122.9 8.0 108 408-530 420-528 (623)
33 KOG1259 Nischarin, modulator o 99.1 2.9E-11 6.3E-16 109.2 2.3 127 408-555 286-413 (490)
34 KOG1909 Ran GTPase-activating 99.1 9.5E-12 2.1E-16 114.9 -2.2 117 402-529 181-310 (382)
35 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.3E-15 101.4 3.8 13 141-153 20-32 (175)
36 KOG1909 Ran GTPase-activating 99.0 1.4E-11 3.1E-16 113.7 -2.0 41 230-270 183-226 (382)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.8E-09 3.9E-14 117.1 5.1 83 117-201 546-630 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.5E-14 77.9 2.3 60 494-553 2-61 (61)
39 KOG0531 Protein phosphatase 1, 98.8 4E-10 8.7E-15 114.4 -0.4 104 256-365 71-175 (414)
40 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4E-14 76.8 2.6 61 469-529 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.8 3.6E-09 7.8E-14 114.8 5.8 129 65-200 523-653 (889)
42 KOG0531 Protein phosphatase 1, 98.8 5.1E-10 1.1E-14 113.6 -0.9 242 280-556 70-320 (414)
43 KOG2120 SCF ubiquitin ligase, 98.7 3.5E-10 7.6E-15 102.3 -4.7 161 92-268 186-349 (419)
44 KOG2120 SCF ubiquitin ligase, 98.6 7.1E-10 1.5E-14 100.3 -7.2 60 141-200 186-245 (419)
45 PF08263 LRRNT_2: Leucine rich 98.6 1.1E-07 2.4E-12 61.7 4.4 41 20-62 1-43 (43)
46 KOG2982 Uncharacterized conser 98.4 8.5E-08 1.8E-12 87.1 2.1 84 115-199 70-156 (418)
47 KOG1859 Leucine-rich repeat pr 98.4 3.6E-09 7.7E-14 106.8 -7.6 126 118-269 166-291 (1096)
48 KOG1859 Leucine-rich repeat pr 98.3 1E-08 2.3E-13 103.5 -6.4 83 468-553 208-291 (1096)
49 KOG2982 Uncharacterized conser 98.2 1.6E-07 3.4E-12 85.4 -1.2 37 402-438 245-287 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.2 9.4E-07 2E-11 79.4 3.3 238 302-555 28-317 (388)
51 KOG4579 Leucine-rich repeat (L 98.1 1.1E-07 2.4E-12 76.3 -3.5 129 408-555 29-160 (177)
52 KOG4341 F-box protein containi 98.1 9.2E-08 2E-12 91.0 -5.7 281 65-364 138-438 (483)
53 COG5238 RNA1 Ran GTPase-activa 98.0 7.6E-07 1.6E-11 80.0 -0.9 136 65-202 30-198 (388)
54 PRK15386 type III secretion pr 98.0 2E-05 4.4E-10 77.2 8.7 50 332-383 54-104 (426)
55 KOG3665 ZYG-1-like serine/thre 98.0 2.2E-06 4.8E-11 91.0 1.7 37 162-200 170-206 (699)
56 PF12799 LRR_4: Leucine Rich r 98.0 7.4E-06 1.6E-10 53.2 3.4 36 117-153 2-37 (44)
57 PF12799 LRR_4: Leucine Rich r 98.0 6E-06 1.3E-10 53.6 2.7 36 494-530 2-37 (44)
58 KOG4341 F-box protein containi 97.9 3.1E-07 6.7E-12 87.4 -5.3 37 468-504 400-437 (483)
59 KOG4579 Leucine-rich repeat (L 97.9 2.6E-06 5.6E-11 68.6 -0.2 87 466-555 50-137 (177)
60 PRK15386 type III secretion pr 97.9 9.8E-05 2.1E-09 72.5 10.5 54 254-314 49-104 (426)
61 KOG1644 U2-associated snRNP A' 97.8 2.9E-05 6.3E-10 67.1 5.7 109 90-201 41-152 (233)
62 KOG3665 ZYG-1-like serine/thre 97.8 7.1E-06 1.5E-10 87.2 2.2 138 65-205 122-266 (699)
63 KOG1644 U2-associated snRNP A' 97.7 6.3E-05 1.4E-09 65.1 6.0 61 255-316 62-125 (233)
64 KOG2123 Uncharacterized conser 97.4 1.6E-05 3.5E-10 72.0 -2.3 84 462-547 34-123 (388)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00022 4.8E-09 64.5 1.9 109 86-199 38-153 (260)
66 PF13306 LRR_5: Leucine rich r 97.1 0.0017 3.7E-08 54.0 6.6 84 111-198 7-90 (129)
67 PF13306 LRR_5: Leucine rich r 97.0 0.0024 5.1E-08 53.2 7.2 123 401-544 7-129 (129)
68 KOG2123 Uncharacterized conser 97.0 5.9E-05 1.3E-09 68.4 -2.7 100 405-523 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.9 0.00053 1.1E-08 62.1 2.4 16 300-315 112-127 (260)
70 KOG1947 Leucine rich repeat pr 96.1 0.0012 2.7E-08 68.9 -0.4 114 89-202 186-308 (482)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0069 1.5E-07 32.6 0.4 18 519-537 2-19 (22)
72 PF00560 LRR_1: Leucine Rich R 94.9 0.0088 1.9E-07 32.1 0.3 19 495-514 2-20 (22)
73 KOG1947 Leucine rich repeat pr 94.7 0.0077 1.7E-07 62.8 -0.4 234 65-316 188-439 (482)
74 KOG0473 Leucine-rich repeat pr 93.8 0.0023 5.1E-08 56.8 -5.3 83 468-553 41-123 (326)
75 KOG4308 LRR-containing protein 93.7 0.00044 9.6E-09 70.6 -11.7 123 398-531 164-304 (478)
76 PF13504 LRR_7: Leucine rich r 93.3 0.051 1.1E-06 27.0 1.3 15 283-297 2-16 (17)
77 KOG3864 Uncharacterized conser 92.7 0.022 4.8E-07 49.8 -1.0 83 431-528 102-187 (221)
78 KOG3864 Uncharacterized conser 92.4 0.034 7.4E-07 48.6 -0.3 85 406-504 101-187 (221)
79 KOG0473 Leucine-rich repeat pr 90.3 0.0086 1.9E-07 53.3 -6.0 84 65-154 42-125 (326)
80 PF13516 LRR_6: Leucine Rich r 90.0 0.078 1.7E-06 29.1 -0.3 17 517-533 2-18 (24)
81 KOG4308 LRR-containing protein 88.3 0.0035 7.6E-08 64.1 -11.6 38 282-319 262-305 (478)
82 smart00370 LRR Leucine-rich re 86.7 0.54 1.2E-05 26.2 1.8 13 494-506 3-15 (26)
83 smart00369 LRR_TYP Leucine-ric 86.7 0.54 1.2E-05 26.2 1.8 13 494-506 3-15 (26)
84 smart00370 LRR Leucine-rich re 85.5 0.76 1.6E-05 25.6 2.0 22 516-537 1-22 (26)
85 smart00369 LRR_TYP Leucine-ric 85.5 0.76 1.6E-05 25.6 2.0 22 516-537 1-22 (26)
86 KOG4242 Predicted myosin-I-bin 84.6 9.9 0.00021 38.3 10.2 155 43-202 132-312 (553)
87 KOG4242 Predicted myosin-I-bin 78.1 8 0.00017 38.9 7.1 19 190-208 215-233 (553)
88 smart00364 LRR_BAC Leucine-ric 78.0 1.8 3.8E-05 24.2 1.6 18 282-299 2-19 (26)
89 smart00368 LRR_RI Leucine rich 71.0 2.4 5.3E-05 24.1 1.1 15 517-531 2-16 (28)
90 smart00365 LRR_SD22 Leucine-ri 70.8 3.6 7.8E-05 23.0 1.7 14 541-554 2-15 (26)
91 KOG3763 mRNA export factor TAP 67.4 3.1 6.7E-05 42.6 1.6 63 281-343 217-283 (585)
92 KOG3763 mRNA export factor TAP 57.2 4.9 0.00011 41.2 1.0 66 466-531 215-284 (585)
93 smart00367 LRR_CC Leucine-rich 33.9 30 0.00065 19.0 1.4 12 430-441 2-13 (26)
94 TIGR00864 PCC polycystin catio 20.5 63 0.0014 40.6 2.2 14 468-481 18-31 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-59 Score=525.83 Aligned_cols=527 Identities=31% Similarity=0.446 Sum_probs=372.0
Q ss_pred hhcCCCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCC
Q 048194 14 FVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYL 93 (558)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L 93 (558)
...+..+++|++||++||+.+.++.. ...+|+...+||.|.|+.|+..++|+.|+++++.+.+..+. .+..+++|
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~--~~~~l~~L 95 (968)
T PLN00113 21 LNFSMLHAEELELLLSFKSSINDPLK---YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS--AIFRLPYI 95 (968)
T ss_pred HHccCCCHHHHHHHHHHHHhCCCCcc---cCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh--HHhCCCCC
Confidence 33334477899999999999964433 67899888899999999998778999999999999988877 79999999
Q ss_pred CEEECCCCCCCCCccchhh-cCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEc
Q 048194 94 RSLNLARTSFNGTQISSKL-ANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVL 172 (558)
Q Consensus 94 ~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 172 (558)
++|+|++|.+.+. +|..+ ..+++|++|++++|.+++.+|. +.+++|++|++++|.+.+.+|. .++++++|++|++
T Consensus 96 ~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L 171 (968)
T PLN00113 96 QTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDL 171 (968)
T ss_pred CEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCEEEC
Confidence 9999999999876 77655 4899999999999998877775 4578888888888888866665 5788888888888
Q ss_pred cCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhh----------hchhhhcccCCCCCCCEEEcccc
Q 048194 173 SDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ----------IKRVYSCLGLRTQKLTPLLLSSN 242 (558)
Q Consensus 173 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l----------i~~~~~~~~~~~~~L~~L~l~~n 242 (558)
++|.+.+.+|..+.++++|++|++++|.+.+.+|..+ ..+..|+.+ +|..+ ..+++|++|++++|
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n 246 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEI----GGLTSLNHLDLVYN 246 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhH----hcCCCCCEEECcCc
Confidence 8888887888888888888888888888887777665 222333322 33334 55566666666666
Q ss_pred cCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC-CCCCCCCCEEecCCCcccccC
Q 048194 243 NLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREI 320 (558)
Q Consensus 243 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~ 320 (558)
.+.+.+| ..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.++ .+|. +..+++|++|++++|.+.+..
T Consensus 247 ~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 247 NLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred eeccccC-hhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 6654444 34556666666666666665554444 555566666666666555 4444 555666666666666666556
Q ss_pred ChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCCC---CCCCcEEEccCCcccccCCCC---
Q 048194 321 PNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQL---PNNPIYIDFSNNNFTSSIPAD--- 392 (558)
Q Consensus 321 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~l~l~~n~~~~~~~~~--- 392 (558)
|..+..++. |+.|++++|.+.+..+. ..+++|+.|++++|++.+.+|.. ..+++.+++++|.+.+.+|..
T Consensus 325 ~~~~~~l~~--L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 325 PVALTSLPR--LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred ChhHhcCCC--CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 655555544 66666666666544333 22556666666666665555432 234555555555555433321
Q ss_pred ------------CccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCc---eeec
Q 048194 393 ------------TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA---PITI 457 (558)
Q Consensus 393 ------------~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~---~~~~ 457 (558)
.+.+.+|..+..++.|+.|++++|.+.+.++..+..+++|+.|++++|.+.+.+|..+... .+.+
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l 482 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence 1223455555555666666666666665555555566666666666666666555543210 1111
Q ss_pred -----cccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCccc
Q 048194 458 -----KGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA 532 (558)
Q Consensus 458 -----~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 532 (558)
.+.....+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|||++|++++.
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence 111223345678899999999999988999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCCCEEeCcCCcCeeecC
Q 048194 533 IPSQLASLYFLSYLNLSYNQLEGRFQ 558 (558)
Q Consensus 533 ~~~~~~~l~~L~~L~l~~n~l~~~~~ 558 (558)
+|..+.++++|+++++++|+++|.+|
T Consensus 563 ~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 563 IPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999887
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-47 Score=431.57 Aligned_cols=456 Identities=30% Similarity=0.418 Sum_probs=332.5
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.+++.|++++|++++..|. ..+++|++|++++|.+.+. +|..++++++|++|++++|.+.+.+|..++++++|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~----~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR----GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCEEECcCCccccccCc----cccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 5788899999888776654 4577888888888888776 7888888888888888888888788888888888888
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhh-----
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ----- 219 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l----- 219 (558)
|++++|.+.+.+|. .++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+ ..+..|+.+
T Consensus 193 L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n 270 (968)
T PLN00113 193 LTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQN 270 (968)
T ss_pred eeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCC
Confidence 88888888766665 57888888888888888887888888888888888888888877777655 233334333
Q ss_pred -----hchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCC
Q 048194 220 -----IKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL 294 (558)
Q Consensus 220 -----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 294 (558)
+|..+ ..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+
T Consensus 271 ~l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 271 KLSGPIPPSI----FSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKF 344 (968)
T ss_pred eeeccCchhH----hhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCC
Confidence 33444 566777777777777765555 45667777777777777777666555 66777777777777777
Q ss_pred C-CCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCC
Q 048194 295 R-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQ 370 (558)
Q Consensus 295 ~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~ 370 (558)
+ .+|. +..+++|+.|++++|++.+.+|.++..... ++.|++++|.+.+..+. ..+++|+.|++++|.+++.+|.
T Consensus 345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~--L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN--LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC--CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 6 5665 677777777777777777777776665544 67777777766655443 2366777777777777666554
Q ss_pred C---CCCCcEEEccCCcccccCCCC---------------CccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCC
Q 048194 371 L---PNNPIYIDFSNNNFTSSIPAD---------------TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKML 432 (558)
Q Consensus 371 ~---~~~l~~l~l~~n~~~~~~~~~---------------~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 432 (558)
. +++++.+++++|.+++.++.. .+.+.+|..+ ...+|+.|++++|++.+.+|..+..+++|
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 501 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL 501 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence 3 345666777766666443321 1112333332 23556666666666666666666666666
Q ss_pred CEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccc
Q 048194 433 EVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS 512 (558)
Q Consensus 433 ~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 512 (558)
+.|++++|.+.+.+|..+. .+++|++|++++|.+++.+|..++.+++|+.|++++|++++.+|..
T Consensus 502 ~~L~Ls~N~l~~~~p~~~~---------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 502 MQLKLSENKLSGEIPDELS---------------SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred CEEECcCCcceeeCChHHc---------------CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 7777777766666665543 4899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCc
Q 048194 513 FGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ 552 (558)
Q Consensus 513 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 552 (558)
+.+++.|+.|++++|++.+.+|.. ..+..+......+|+
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 999999999999999999988854 333444445555554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-38 Score=304.00 Aligned_cols=366 Identities=22% Similarity=0.245 Sum_probs=309.5
Q ss_pred CCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEE
Q 048194 92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAV 171 (558)
Q Consensus 92 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 171 (558)
.-+.|++++|.+... -+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ ++.+..++.++.|+.||
T Consensus 79 ~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 567899999999988 7888999999999999999999 88987777788999999999999 66444789999999999
Q ss_pred ccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChh
Q 048194 172 LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLD 251 (558)
Q Consensus 172 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 251 (558)
|+.|.++..--..+..-.++++|+|++|+|+..-...| ..+.+|..|.|+.|+++ .+|..
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F-------------------~~lnsL~tlkLsrNrit-tLp~r 215 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF-------------------DSLNSLLTLKLSRNRIT-TLPQR 215 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccc-------------------cccchheeeecccCccc-ccCHH
Confidence 99999985444556666889999999999997666555 77889999999999998 89999
Q ss_pred hhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhcc
Q 048194 252 KILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSV 329 (558)
Q Consensus 252 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 329 (558)
.|+.+++|+.|++..|++.-..... |..+++|+.|.+..|++..+.+ |..+.++++|+++.|++...-..|+.++..
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred Hhhhcchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 9999999999999999997544444 8899999999999999999988 899999999999999998877788888887
Q ss_pred ccceEEEcCCccccccCCC-CC-CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCC
Q 048194 330 VGLHCLNLSHNFLVGFQAP-YS-IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL 407 (558)
Q Consensus 330 ~~L~~L~ls~n~l~~~~~~-~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~ 407 (558)
|+.|++|+|.|+.+... +. +++|++|+|++|+++. --+..|..+..
T Consensus 295 --L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~------------------------------l~~~sf~~L~~ 342 (873)
T KOG4194|consen 295 --LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR------------------------------LDEGSFRVLSQ 342 (873)
T ss_pred --hhhhccchhhhheeecchhhhcccceeEecccccccc------------------------------CChhHHHHHHH
Confidence 99999999999887766 33 8888888888888762 22345666778
Q ss_pred CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE 487 (558)
Q Consensus 408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 487 (558)
|+.|+|+.|.+....-..|..+++|++|||++|.++..+-+. ...+..+++|+.|+|.+|++..+.-.
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa------------a~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA------------AVAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc------------hhhhccchhhhheeecCceeeecchh
Confidence 889999999888665667788899999999999887543331 22334488899999999999887778
Q ss_pred hhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCC
Q 048194 488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM 526 (558)
Q Consensus 488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 526 (558)
.|.+++.|+.|+|.+|.|....|.+|..| .|++|-++.
T Consensus 411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 89999999999999999988888999888 888887654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-37 Score=294.46 Aligned_cols=361 Identities=24% Similarity=0.263 Sum_probs=281.8
Q ss_pred CCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcC-CCCccEEEccCCccCccCCccccCCCCCCEEe
Q 048194 117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEH-LLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQ 195 (558)
Q Consensus 117 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 195 (558)
.-+.|++++|++...-+..|.++++|+.+++.+|.++ .+|. ++. ..+|+.|+|.+|.|+..-.+++..++.|+.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 4567999999999888888999999999999999998 7875 444 45599999999999877788888999999999
Q ss_pred CccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCC
Q 048194 196 LANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESS 275 (558)
Q Consensus 196 l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 275 (558)
|+.|.++...-..+ ..-.++++|+|++|.++ .+....|..+.+|..|.++.|+++...+.
T Consensus 156 LSrN~is~i~~~sf-------------------p~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r 215 (873)
T KOG4194|consen 156 LSRNLISEIPKPSF-------------------PAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQR 215 (873)
T ss_pred hhhchhhcccCCCC-------------------CCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHH
Confidence 99999874433333 44467888888888887 66667788888888888888888754444
Q ss_pred cccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC--CCC
Q 048194 276 RNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSI 351 (558)
Q Consensus 276 ~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~ 351 (558)
. |..+++|+.|++..|++..+.. |..+++|+.|.+..|.+...-...|..+.. +++|+|..|+++.+... .++
T Consensus 216 ~-Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k--me~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 216 S-FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK--MEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred H-hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc--cceeecccchhhhhhccccccc
Confidence 4 7788888888888888775544 778888888888888876555556666666 88888888887766554 446
Q ss_pred CccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCC
Q 048194 352 PALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKM 431 (558)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 431 (558)
.+|+.|++++|.|.. .-++.|.-+++|+.|+|++|+++...+..|..+..
T Consensus 293 t~L~~L~lS~NaI~r------------------------------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQR------------------------------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ 342 (873)
T ss_pred chhhhhccchhhhhe------------------------------eecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence 777777777776652 23456777788999999999999888888888999
Q ss_pred CCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC---chhhcccCCCCeeeCcCCcCccc
Q 048194 432 LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI---LEDVGLLKSLYGLNLSHNALTGS 508 (558)
Q Consensus 432 L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~ 508 (558)
|++|+|+.|++...-- ..+..+++|++|||++|.+...+ ...|.++++|+.|.+.+|++...
T Consensus 343 Le~LnLs~Nsi~~l~e---------------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAE---------------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred hhhhcccccchHHHHh---------------hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 9999999998863221 22345889999999999887543 34577799999999999999844
Q ss_pred ccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCc
Q 048194 509 IPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLS 549 (558)
Q Consensus 509 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 549 (558)
.-.+|..+.+|+.|||.+|.+..+-|+.|..+ .|+.|-+.
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred chhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 44678999999999999999988888888887 78777654
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.4e-39 Score=297.46 Aligned_cols=421 Identities=27% Similarity=0.364 Sum_probs=303.7
Q ss_pred EEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEe
Q 048194 67 VIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALD 146 (558)
Q Consensus 67 v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 146 (558)
++.+.++.|.+....+ .+..+..|.+|+++.|.+.. +|.+++.+..++.++.++|++. .+|+.++.+..|+.++
T Consensus 47 l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhhccH---hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 4566777777654333 36777778888888887766 6777788888888888888877 7777788888888888
Q ss_pred cccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhc
Q 048194 147 FSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSC 226 (558)
Q Consensus 147 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~ 226 (558)
.++|.+. .+++ .++.+..++.++..+|++. .+|+.++.+.+|..+++.+|++....|..
T Consensus 121 ~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~------------------ 179 (565)
T KOG0472|consen 121 CSSNELK-ELPD-SIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENH------------------ 179 (565)
T ss_pred cccccee-ecCc-hHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHH------------------
Confidence 8888877 4433 4677778888888888877 67777777888888888888877554443
Q ss_pred ccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCC
Q 048194 227 LGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQS 304 (558)
Q Consensus 227 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~ 304 (558)
-.++.|++|+...|.+. .+| ..++.+.+|+.|++..|++... | . |..+..|+++++..|++..+|. ..+++
T Consensus 180 --i~m~~L~~ld~~~N~L~-tlP-~~lg~l~~L~~LyL~~Nki~~l-P-e-f~gcs~L~Elh~g~N~i~~lpae~~~~L~ 252 (565)
T KOG0472|consen 180 --IAMKRLKHLDCNSNLLE-TLP-PELGGLESLELLYLRRNKIRFL-P-E-FPGCSLLKELHVGENQIEMLPAEHLKHLN 252 (565)
T ss_pred --HHHHHHHhcccchhhhh-cCC-hhhcchhhhHHHHhhhcccccC-C-C-CCccHHHHHHHhcccHHHhhHHHHhcccc
Confidence 33667777777777665 666 3467777777777777777633 2 3 6677777777777777777776 56777
Q ss_pred CCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCC-CCccCEEEcccccCcc---cCC-----------
Q 048194 305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRG---NIH----------- 369 (558)
Q Consensus 305 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~---~~~----------- 369 (558)
++..||+.+|++. +.|+.++.+.. |++||+|+|.+++.+...+ + .|+.|-+.+|.+.. .+-
T Consensus 253 ~l~vLDLRdNklk-e~Pde~clLrs--L~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 253 SLLVLDLRDNKLK-EVPDEICLLRS--LERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred cceeeeccccccc-cCchHHHHhhh--hhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 7777777777774 67777766665 7777777777777777655 5 77777777775531 000
Q ss_pred -----------------------C-C------CCC--------------------------CcEEEccCCcccccCCCCC
Q 048194 370 -----------------------Q-L------PNN--------------------------PIYIDFSNNNFTSSIPADT 393 (558)
Q Consensus 370 -----------------------~-~------~~~--------------------------l~~l~l~~n~~~~~~~~~~ 393 (558)
. . .-+ ++..+++.|.+.
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~------- 401 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC------- 401 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-------
Confidence 0 0 001 334444444444
Q ss_pred ccCCCCCCCCCCCCCCE-EECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccce
Q 048194 394 VNGTLPDTFPRNCLLQT-LDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFT 472 (558)
Q Consensus 394 ~~~~~p~~~~~~~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~ 472 (558)
++|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+. .+|...+. +..|+
T Consensus 402 ---elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~---------------lv~Lq 461 (565)
T KOG0472|consen 402 ---ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS---------------LVRLQ 461 (565)
T ss_pred ---hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhh---------------hhhhh
Confidence 45555444433333 34444444 377778888999999999998875 56665543 77799
Q ss_pred EEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCc
Q 048194 473 SIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ 552 (558)
Q Consensus 473 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 552 (558)
+||++.|++. ..|..+..+.-|+.+-.++|++....|..+.+|.+|..|||.+|.+. .+|..+++|++|+.|++.||+
T Consensus 462 ~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 462 TLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCc
Confidence 9999999887 57777777778888888889998767777999999999999999997 789999999999999999999
Q ss_pred Ce
Q 048194 553 LE 554 (558)
Q Consensus 553 l~ 554 (558)
|.
T Consensus 540 fr 541 (565)
T KOG0472|consen 540 FR 541 (565)
T ss_pred cC
Confidence 87
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=2.9e-36 Score=278.13 Aligned_cols=416 Identities=23% Similarity=0.329 Sum_probs=302.6
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
..++.++++.++++. .|+ +++.+..++.++.+.|++.. +|..+..+.+|+.++.++|.+. .+|+.++.+..|+.
T Consensus 68 ~~l~vl~~~~n~l~~-lp~--aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQ-LPA--AIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLED 141 (565)
T ss_pred cceeEEEeccchhhh-CCH--HHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhh
Confidence 457889999988874 444 58888888888888888876 7888888888888888888887 77777888888888
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhh-----
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ----- 219 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l----- 219 (558)
++..+|+++ ..|. ++..+.++..+++.+|++. .+|....+++.|++||...|-++ .+|+.+ +....++.+
T Consensus 142 l~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 142 LDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRN 216 (565)
T ss_pred hhccccccc-cCch-HHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhc
Confidence 888888877 4433 3555555666666666555 23333333555555555555444 333322 112222211
Q ss_pred ----hchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC
Q 048194 220 ----IKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR 295 (558)
Q Consensus 220 ----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 295 (558)
.| .| .++..|++++++.|++. .+|.+..+++.++..||++.|+++. .|.. +..+.+|++||+++|.++
T Consensus 217 ki~~lP-ef----~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde-~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 217 KIRFLP-EF----PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDE-ICLLRSLERLDLSNNDIS 288 (565)
T ss_pred ccccCC-CC----CccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchH-HHHhhhhhhhcccCCccc
Confidence 22 22 77788888888888886 7787778889999999999999874 4444 667788999999999999
Q ss_pred CCCC-CCCCCCCCEEecCCCcccccCChhHHh----------------------------------------hccccceE
Q 048194 296 EIPN-LKNQSQLQYLYLSENQISREIPNWIWR----------------------------------------VSVVGLHC 334 (558)
Q Consensus 296 ~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------~~~~~L~~ 334 (558)
.+|. ++++ .|+.|-+.+|++.. +-..+-. ....+.++
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki 366 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI 366 (565)
T ss_pred cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence 9988 8888 89999999988631 1100000 00123566
Q ss_pred EEcCCccccccCCC-CC---CCccCEEEcccccCcccCCCCCC----CCcEEEccCCcccccCCCCCccCCCCCCCCCCC
Q 048194 335 LNLSHNFLVGFQAP-YS---IPALRFIDLISNQLRGNIHQLPN----NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNC 406 (558)
Q Consensus 335 L~ls~n~l~~~~~~-~~---~~~L~~L~l~~n~~~~~~~~~~~----~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~ 406 (558)
|++++-+++.++.. +. -.-.+.++++.|++. ++|..+. -++.+.+++|.++ -+|..+..++
T Consensus 367 L~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is----------fv~~~l~~l~ 435 (565)
T KOG0472|consen 367 LDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS----------FVPLELSQLQ 435 (565)
T ss_pred hcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc----------cchHHHHhhh
Confidence 77777777666544 11 223667888888776 3333322 2455677777776 6777888999
Q ss_pred CCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc
Q 048194 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL 486 (558)
Q Consensus 407 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 486 (558)
+|..|++++|.+. .+|..++.+..|+.|+++.|++. ..|..+|. +..++.+-.+.|++....+
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~---------------lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE---------------LQTLETLLASNNQIGSVDP 498 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh---------------HHHHHHHHhccccccccCh
Confidence 9999999999987 88999999999999999999986 67777665 6667777777799987777
Q ss_pred hhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc
Q 048194 487 EDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS 530 (558)
Q Consensus 487 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 530 (558)
..+.+|.+|..|++.+|.+. .+|..+++|++|++|++.+|.+.
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 78999999999999999998 89999999999999999999997
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=8.4e-35 Score=282.21 Aligned_cols=362 Identities=26% Similarity=0.313 Sum_probs=210.4
Q ss_pred CCEEEEEcCCCCccc-cccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCc
Q 048194 65 GHVIGLDLSTESISG-GIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLV 143 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 143 (558)
+-|+.+|+++|.+.| ..|. .+..+++++.|.|....+.. +|+.++.+.+|++|.+++|++. .+-..++.++.|+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred ceeecccccCCcCCCCcCch--hHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 456677777777763 4444 56677777777776666654 5677777777777777777766 4555566677777
Q ss_pred EEecccccccccc-cchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhch
Q 048194 144 ALDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKR 222 (558)
Q Consensus 144 ~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~ 222 (558)
.+++..|++.... |. .+.++..|+.|+|++|++. ..|..+..-+++-.|++++|+|. ++|..+.
T Consensus 82 sv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lf------------ 146 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLF------------ 146 (1255)
T ss_pred HHhhhccccccCCCCc-hhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHH------------
Confidence 7777777665444 43 5666777777777777766 56666666667777777777766 3443221
Q ss_pred hhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC--CCCC-
Q 048194 223 VYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR--EIPN- 299 (558)
Q Consensus 223 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~- 299 (558)
.+++.|-.|||++|++. .+|+ .+..+.+|++|++++|.+.-..... +..++.|+.|.+++.+-+ .+|.
T Consensus 147 ------inLtDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 147 ------INLTDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred ------HhhHhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhc-CccchhhhhhhcccccchhhcCCCc
Confidence 45566666677777665 4453 3555666666666666554211111 334455555666665444 5555
Q ss_pred CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCC-CCccCEEEcccccCcccCCCCCCCCcEE
Q 048194 300 LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQLPNNPIYI 378 (558)
Q Consensus 300 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l 378 (558)
+..+.+|..+|++.|.+. .+|+.+..+.. |+.|+||+|.++......+ +.+|+.|+++.|+++
T Consensus 218 ld~l~NL~dvDlS~N~Lp-~vPecly~l~~--LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt------------- 281 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLP-IVPECLYKLRN--LRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT------------- 281 (1255)
T ss_pred hhhhhhhhhccccccCCC-cchHHHhhhhh--hheeccCcCceeeeeccHHHHhhhhhhccccchhc-------------
Confidence 555666666666666653 55555555444 5555555555554333222 333333333333332
Q ss_pred EccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCc-cCCcccccCCCCCEEECCCCcCcccCCccccCceeec
Q 048194 379 DFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQG-TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITI 457 (558)
Q Consensus 379 ~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~ 457 (558)
.+|..+..++.|+.|++.+|+++- -+|..++.+..|++
T Consensus 282 ------------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev----------------------- 320 (1255)
T KOG0444|consen 282 ------------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV----------------------- 320 (1255)
T ss_pred ------------------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH-----------------------
Confidence 344444444455555555554432 13444444444444
Q ss_pred cccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc
Q 048194 458 KGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS 530 (558)
Q Consensus 458 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 530 (558)
+..++|.+. .+|.++..|+.|+.|.|++|++. .+|++|.-++-|+.||+..|.-.
T Consensus 321 ----------------f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 321 ----------------FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ----------------HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 444444444 45666666777777777777666 56777777777777777776543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=9.5e-35 Score=281.85 Aligned_cols=365 Identities=27% Similarity=0.385 Sum_probs=263.1
Q ss_pred cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194 88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL 167 (558)
Q Consensus 88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 167 (558)
+-++..|-.|+++|.+++..+|..+..+.+++.|.|.+.++. .+|..++.+.+|++|.+++|++. .+.. .++.++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhh
Confidence 456678889999999997779999999999999999999998 89999999999999999999988 4422 47888889
Q ss_pred cEEEccCCccC-ccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCc
Q 048194 168 VCAVLSDNSLD-GSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG 246 (558)
Q Consensus 168 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~ 246 (558)
+.+.+.+|++. ..+|..+..+..|..||+++|++. ..|..+ ...+++-.|+|++|++.
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-------------------E~AKn~iVLNLS~N~Ie- 139 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-------------------EYAKNSIVLNLSYNNIE- 139 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh-------------------hhhcCcEEEEcccCccc-
Confidence 99988888875 347888888888888888888887 556544 66677778888888886
Q ss_pred ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC--CCCCCCCCCCCCEEecCCCccc-ccCChh
Q 048194 247 TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR--EIPNLKNQSQLQYLYLSENQIS-REIPNW 323 (558)
Q Consensus 247 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~~~~~~L~~L~l~~n~l~-~~~~~~ 323 (558)
.+|...+.+++.|-.||+++|++....| . ...+.+|++|.+++|.+. .+..+..+++|++|.+++.+-+ .-+|..
T Consensus 140 tIPn~lfinLtDLLfLDLS~NrLe~LPP-Q-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNRLEMLPP-Q-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred cCCchHHHhhHhHhhhccccchhhhcCH-H-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 7777777777777777777777764333 2 556667777777777655 2223455666667777665532 235555
Q ss_pred HHhhccccceEEEcCCccccccCCC-CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCC
Q 048194 324 IWRVSVVGLHCLNLSHNFLVGFQAP-YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTF 402 (558)
Q Consensus 324 ~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~ 402 (558)
+..+.. |..+|+|.|.+..++.. ..+++|+.|++++|+++ ++....
T Consensus 218 ld~l~N--L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-------------------------------eL~~~~ 264 (1255)
T KOG0444|consen 218 LDDLHN--LRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-------------------------------ELNMTE 264 (1255)
T ss_pred hhhhhh--hhhccccccCCCcchHHHhhhhhhheeccCcCcee-------------------------------eeeccH
Confidence 555554 55555555555544433 22444444444444443 111122
Q ss_pred CCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccc
Q 048194 403 PRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFK 482 (558)
Q Consensus 403 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 482 (558)
+.-.+|++|++|.|+++ .+|+.+..+++|+.|.+.+|+++ +.
T Consensus 265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~-------------------------------------Fe 306 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT-------------------------------------FE 306 (1255)
T ss_pred HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc-------------------------------------cc
Confidence 22234555555555555 45555555555555555555443 12
Q ss_pred ccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCc
Q 048194 483 GPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ 552 (558)
Q Consensus 483 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 552 (558)
-+|..++.+.+|+.+..++|.+. ..|+++..+.+|+.|.|+.|++. .+|+.+--++.|+.||++.|+
T Consensus 307 -GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 307 -GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred -CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 26889999999999999999998 89999999999999999999997 799999999999999999985
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-33 Score=284.94 Aligned_cols=416 Identities=28% Similarity=0.353 Sum_probs=302.3
Q ss_pred CEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEE
Q 048194 66 HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL 145 (558)
Q Consensus 66 ~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 145 (558)
++.+||++++.+. ..|. .+..+++|+.|+++.|.+.. .|....++.+|+++.|.+|.+. .+|..+..+.+|++|
T Consensus 46 ~L~~l~lsnn~~~-~fp~--~it~l~~L~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPI--QITLLSHLRQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYL 119 (1081)
T ss_pred eeEEeeccccccc-cCCc--hhhhHHHHhhcccchhhHhh--Cchhhhhhhcchhheeccchhh-cCchhHHhhhccccc
Confidence 3788888888765 4444 57788888888888888766 5777888888888888888887 788888888888888
Q ss_pred ecccccccccccchhhcCCCCccEEEccCC-------------------ccCccCCccccCCCCCCEEeCccccCCCCCC
Q 048194 146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDN-------------------SLDGSIPRSMFEFPMLQQLQLANNQFGGSIP 206 (558)
Q Consensus 146 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-------------------~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 206 (558)
++++|.+. .+|. .+..+..++.+..++| .+.+.++..+..+.. .|++++|.+. ...
T Consensus 120 dlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d 194 (1081)
T KOG0618|consen 120 DLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD 194 (1081)
T ss_pred ccchhccC-CCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh
Confidence 88888887 5544 2444444444444444 444444444443333 4555555443 111
Q ss_pred ccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCE
Q 048194 207 RFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL 286 (558)
Q Consensus 207 ~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 286 (558)
. ..+.+|+.|....|++. .+ .-.-++|+.|+..+|.++.... .....+|++
T Consensus 195 l---------------------s~~~~l~~l~c~rn~ls-~l----~~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~ 245 (1081)
T KOG0618|consen 195 L---------------------SNLANLEVLHCERNQLS-EL----EISGPSLTALYADHNPLTTLDV---HPVPLNLQY 245 (1081)
T ss_pred h---------------------hhccchhhhhhhhcccc-eE----EecCcchheeeeccCcceeecc---cccccccee
Confidence 0 44555666666655554 11 1234567777777777763222 223557888
Q ss_pred EecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCC-CCccCEEEcccccC
Q 048194 287 LNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQL 364 (558)
Q Consensus 287 L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~ 364 (558)
++++.++++.+|+ +..+.+|+.++..+|.++ .+|..+..... |+.|....|.+..+++... ...|+.|++..|++
T Consensus 246 ~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~--L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 246 LDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITS--LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred eecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhh--HHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 8899888888888 888888999999888884 67777777776 8888888899888888755 88899999998887
Q ss_pred cccCCCCC----CCCcEEEccCCcccccCCCCCccCCCCCC-CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCC
Q 048194 365 RGNIHQLP----NNPIYIDFSNNNFTSSIPADTVNGTLPDT-FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGN 439 (558)
Q Consensus 365 ~~~~~~~~----~~l~~l~l~~n~~~~~~~~~~~~~~~p~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 439 (558)
.......+ .++..++.+.|++. ..|.. -..++.|+.|++.+|.+++.....+.+.+.|++|+|++
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~n~l~----------~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSSNKLS----------TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhhcccc----------ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 64333221 23566666777665 33321 12356799999999999988777889999999999999
Q ss_pred CcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCC
Q 048194 440 NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRL 519 (558)
Q Consensus 440 n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 519 (558)
|++. .+|. ....++..|++|+||+|.++ .+|..+..++.|++|...+|++. ..| ++..++.|
T Consensus 393 NrL~-~fpa--------------s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 393 NRLN-SFPA--------------SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred cccc-cCCH--------------HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 9986 4443 34456899999999999999 47799999999999999999998 678 78999999
Q ss_pred CeecCCCCcCcccchhhhcCCCCCCEEeCcCCc
Q 048194 520 ESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ 552 (558)
Q Consensus 520 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 552 (558)
+.+|++.|+++......-...++|++||++||.
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999999975433323333899999999996
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=6.2e-32 Score=273.91 Aligned_cols=436 Identities=26% Similarity=0.286 Sum_probs=281.3
Q ss_pred CEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEE
Q 048194 66 HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL 145 (558)
Q Consensus 66 ~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 145 (558)
.++.|+++.|.+....-+ .+.+.-.|+.|++++|.+.. +|..+..+++|+.|+++.|.+. ..|....++.+|++|
T Consensus 22 ~~~~ln~~~N~~l~~pl~--~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLE--FVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYL 96 (1081)
T ss_pred HHHhhhccccccccCchH--HhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhh
Confidence 477788887765432222 34445559999999998877 7888889999999999999998 788888999999999
Q ss_pred ecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccc----cccccchhhhhc
Q 048194 146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFS----NASSSALDTQIK 221 (558)
Q Consensus 146 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~~~~~l~~li~ 221 (558)
.|.+|++. ..|. .++.+++|++|++++|.+. .+|..+..+..+..+..++|.....++... ......+...++
T Consensus 97 nL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 97 NLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFL 173 (1081)
T ss_pred eeccchhh-cCch-hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchh
Confidence 99999988 6665 6889999999999999987 788888888888888888882221222110 000000000011
Q ss_pred hhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCC
Q 048194 222 RVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLK 301 (558)
Q Consensus 222 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~ 301 (558)
..+ ..++. .|++++|.+. . ..+..+.+|+.+....|++.... ...++++.|+.+.|.++.+-.-.
T Consensus 174 ~~i----~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~~~p 238 (1081)
T KOG0618|consen 174 IDI----YNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLDVHP 238 (1081)
T ss_pred cch----hhhhe--eeecccchhh-h---hhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcceeecccc
Confidence 111 11111 2555555443 1 12344455555555555443221 12345666666666655333334
Q ss_pred CCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCC-CCccCEEEcccccCcccCCC--CCCCCcEE
Q 048194 302 NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQ--LPNNPIYI 378 (558)
Q Consensus 302 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~~~~~--~~~~l~~l 378 (558)
...+|+++++++|++. .+|.|+..+.. ++.++..+|.++..+.... ..+|+.+.+..|.+.-..+. ...++++|
T Consensus 239 ~p~nl~~~dis~n~l~-~lp~wi~~~~n--le~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLS-NLPEWIGACAN--LEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhh-cchHHHHhccc--ceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeee
Confidence 4556667777777665 44566666555 6666666666655554432 55666666666665532221 13355555
Q ss_pred EccCCcccccCCCCCccCCCCCCCCC-C-CCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceee
Q 048194 379 DFSNNNFTSSIPADTVNGTLPDTFPR-N-CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPIT 456 (558)
Q Consensus 379 ~l~~n~~~~~~~~~~~~~~~p~~~~~-~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~ 456 (558)
++..|++. .+|+.+-. . ..|..|..+.|++.......=..++.|+.|.+.+|.+++..-
T Consensus 316 dL~~N~L~----------~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~--------- 376 (1081)
T KOG0618|consen 316 DLQSNNLP----------SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF--------- 376 (1081)
T ss_pred eehhcccc----------ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch---------
Confidence 55555554 33332111 1 113444444444441111111234456666666666654433
Q ss_pred ccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhh
Q 048194 457 IKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQ 536 (558)
Q Consensus 457 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 536 (558)
..+..+++|+.|+|++|++.......+.+++.|++|+|++|+++ .+|.++.++..|++|...+|++. ..| .
T Consensus 377 ------p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e 447 (1081)
T KOG0618|consen 377 ------PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E 447 (1081)
T ss_pred ------hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence 33445899999999999999777777899999999999999999 79999999999999999999997 678 7
Q ss_pred hcCCCCCCEEeCcCCcCee
Q 048194 537 LASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 537 ~~~l~~L~~L~l~~n~l~~ 555 (558)
+..+++|+.+|++.|+++.
T Consensus 448 ~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhhcCcceEEecccchhhh
Confidence 8899999999999999874
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=3.7e-24 Score=241.64 Aligned_cols=367 Identities=18% Similarity=0.174 Sum_probs=222.4
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCC-----CccchhhcCCC-CCCEEeCcCCcCccCCChhccC
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNG-----TQISSKLANIS-SLTYLNLSDAGFAGQIPVQISR 138 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-----~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~ 138 (558)
.+|..+.+....+.........|..+++|+.|.+..+.... ..+|..+..++ +|+.|++.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 45665555444333221122257778888888776543211 11455565553 5778888777776 666665 4
Q ss_pred CCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhh
Q 048194 139 MARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDT 218 (558)
Q Consensus 139 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 218 (558)
..+|++|++++|.+. .++. .+..+++|++|+++++.....+|. +..+++|++|++++|.....+|..+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si--------- 677 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI--------- 677 (1153)
T ss_pred ccCCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh---------
Confidence 677788888877776 4433 356677777777777654445553 6667777777777776555666554
Q ss_pred hhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCC
Q 048194 219 QIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP 298 (558)
Q Consensus 219 li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~ 298 (558)
..+++|+.|++++|...+.+|.. + ++++|+.|++++|......|. ..++|+.|++++|.++.+|
T Consensus 678 ----------~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 678 ----------QYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFP 741 (1153)
T ss_pred ----------hccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccc
Confidence 66677777777776544455532 1 566677777776654333322 1345666666666666666
Q ss_pred CCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEE
Q 048194 299 NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYI 378 (558)
Q Consensus 299 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 378 (558)
....+++|++|++.++... .+...+. ... ......+++|+.|
T Consensus 742 ~~~~l~~L~~L~l~~~~~~-~l~~~~~------------------~l~-------------------~~~~~~~~sL~~L 783 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSE-KLWERVQ------------------PLT-------------------PLMTMLSPSLTRL 783 (1153)
T ss_pred ccccccccccccccccchh-hcccccc------------------ccc-------------------hhhhhccccchhe
Confidence 5334555555555543321 0100000 000 0001112344455
Q ss_pred EccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeecc
Q 048194 379 DFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIK 458 (558)
Q Consensus 379 ~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~ 458 (558)
++++|... +.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 784 ~Ls~n~~l---------~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--------- 844 (1153)
T PLN03210 784 FLSDIPSL---------VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--------- 844 (1153)
T ss_pred eCCCCCCc---------cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---------
Confidence 55544433 3567777888888888888876555666655 6788888888887655444432
Q ss_pred ccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCc
Q 048194 459 GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNN 528 (558)
Q Consensus 459 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~ 528 (558)
..+|+.|+|++|.++ .+|.++..+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus 845 ---------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 ---------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 467888888888887 467778888888888888754333577777788888888888874
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=4e-23 Score=233.32 Aligned_cols=273 Identities=21% Similarity=0.197 Sum_probs=176.8
Q ss_pred CCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCC-CCCCCCCCCCCCCCC
Q 048194 229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC-KLREIPNLKNQSQLQ 307 (558)
Q Consensus 229 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~~~~~~~L~ 307 (558)
..+++|+.|+++++...+.+| .++.+++|++|++++|......|.. +..+++|+.|++++| .++.+|...++++|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~ 707 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGINLKSLY 707 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence 344555555555443322333 2444555555555555433333433 455556666666655 455555533556666
Q ss_pred EEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccc
Q 048194 308 YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTS 387 (558)
Q Consensus 308 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~ 387 (558)
.|++++|...+.+|... .+|++|++++|.+..++....+++|+.|++.++.... +.+
T Consensus 708 ~L~Lsgc~~L~~~p~~~-----~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~------------------l~~ 764 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDIS-----TNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK------------------LWE 764 (1153)
T ss_pred EEeCCCCCCcccccccc-----CCcCeeecCCCccccccccccccccccccccccchhh------------------ccc
Confidence 66666665444444321 2366666666666554444445555555555433210 000
Q ss_pred cCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhh
Q 048194 388 SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467 (558)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~ 467 (558)
. +....+.....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .
T Consensus 765 ~-----~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~----------------~ 823 (1153)
T PLN03210 765 R-----VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI----------------N 823 (1153)
T ss_pred c-----ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC----------------C
Confidence 0 001112223345689999999998888899999999999999999997666777654 2
Q ss_pred hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEe
Q 048194 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLN 547 (558)
Q Consensus 468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 547 (558)
+++|+.|++++|.....+|.. ..+|++|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 789999999998755444432 478999999999998 7999999999999999999755456887888899999999
Q ss_pred CcCCc
Q 048194 548 LSYNQ 552 (558)
Q Consensus 548 l~~n~ 552 (558)
+++|.
T Consensus 900 l~~C~ 904 (1153)
T PLN03210 900 FSDCG 904 (1153)
T ss_pred cCCCc
Confidence 99884
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=1.9e-22 Score=211.79 Aligned_cols=261 Identities=25% Similarity=0.272 Sum_probs=203.4
Q ss_pred CCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEec
Q 048194 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL 311 (558)
Q Consensus 232 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l 311 (558)
..-..|+++++.++ .+|.. +. ++|+.|++.+|+++.. |. .+++|++|++++|+++.+|.+ .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~-l~--~~L~~L~L~~N~Lt~L-P~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDC-LP--AHITTLVIPDNNLTSL-PA----LPPELRTLEVSGNQLTSLPVL--PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcc-hh--cCCCEEEccCCcCCCC-CC----CCCCCcEEEecCCccCcccCc--ccccceeec
Confidence 45668899999988 67743 32 4799999999998853 32 268899999999999999863 468999999
Q ss_pred CCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCC
Q 048194 312 SENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPA 391 (558)
Q Consensus 312 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 391 (558)
++|.+. .+|... ..|+.|++++|.++.++. .+++|+.|++++|++.+ +|..+.+|+.|++++|.++
T Consensus 270 s~N~L~-~Lp~lp-----~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~----- 335 (788)
T PRK15387 270 FSNPLT-HLPALP-----SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLT----- 335 (788)
T ss_pred cCCchh-hhhhch-----hhcCEEECcCCccccccc--cccccceeECCCCcccc-CCCCcccccccccccCccc-----
Confidence 999886 445432 238899999999987654 25789999999999885 5667788999999999987
Q ss_pred CCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccc
Q 048194 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF 471 (558)
Q Consensus 392 ~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L 471 (558)
.+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|.+++ +|.. ..+|
T Consensus 336 -----~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l------------------~~~L 384 (788)
T PRK15387 336 -----SLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL------------------PSGL 384 (788)
T ss_pred -----ccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc------------------cccc
Confidence 34432 246899999999998 45543 3578889999999874 4532 4578
Q ss_pred eEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCC
Q 048194 472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551 (558)
Q Consensus 472 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 551 (558)
+.|++++|.+++ +|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..+.++++|+.|+|++|
T Consensus 385 ~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 385 KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence 999999999985 4432 368999999999998 577543 46788999999998 68988999999999999999
Q ss_pred cCeeec
Q 048194 552 QLEGRF 557 (558)
Q Consensus 552 ~l~~~~ 557 (558)
+|+|.+
T Consensus 456 ~Ls~~~ 461 (788)
T PRK15387 456 PLSERT 461 (788)
T ss_pred CCCchH
Confidence 999865
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=8.7e-25 Score=202.22 Aligned_cols=132 Identities=22% Similarity=0.266 Sum_probs=111.0
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcC-CcCccCCChhccCCCCCc
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSD-AGFAGQIPVQISRMARLV 143 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~ 143 (558)
...+.|+|..|.|+...+. .|..+++||+|||+.|.++.+ -|+.|.++++|..|-+-+ |+|+......|+++..|+
T Consensus 67 ~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 5789999999999877766 899999999999999999988 899999999988876655 888855556789999999
Q ss_pred EEecccccccccccchhhcCCCCccEEEccCCccCccCCc-cccCCCCCCEEeCccccC
Q 048194 144 ALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPR-SMFEFPMLQQLQLANNQF 201 (558)
Q Consensus 144 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~ 201 (558)
.|.+.-|++. -++...+..++++..|.+.+|.+. .++. .+..+..++++.+..|.+
T Consensus 144 rLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 144 RLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred HHhcChhhhc-chhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence 9999999988 554337899999999999999988 4554 677889999999988874
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=8.1e-22 Score=206.98 Aligned_cols=222 Identities=25% Similarity=0.266 Sum_probs=95.8
Q ss_pred CCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEec
Q 048194 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL 311 (558)
Q Consensus 232 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l 311 (558)
++|++|++++|+++ .+|. ..++|+.|++++|.+.... . .+..|+.|++++|+++.+|.. +++|+.|++
T Consensus 242 ~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp-~----lp~~L~~L~Ls~N~Lt~LP~~--p~~L~~LdL 309 (788)
T PRK15387 242 PELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLP-A----LPSGLCKLWIFGNQLTSLPVL--PPGLQELSV 309 (788)
T ss_pred CCCcEEEecCCccC-cccC----cccccceeeccCCchhhhh-h----chhhcCEEECcCCcccccccc--ccccceeEC
Confidence 34555555555444 3331 1234455555555443211 1 123455555555555555531 244555555
Q ss_pred CCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCC
Q 048194 312 SENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPA 391 (558)
Q Consensus 312 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 391 (558)
++|++.+ +|... ..|+.|++++|.++.++.. .++|+.|++++|++++ +|..+.+++.|++++|.++
T Consensus 310 S~N~L~~-Lp~lp-----~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~----- 375 (788)
T PRK15387 310 SDNQLAS-LPALP-----SELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT----- 375 (788)
T ss_pred CCCcccc-CCCCc-----ccccccccccCcccccccc--ccccceEecCCCccCC-CCCCCcccceehhhccccc-----
Confidence 5555542 22211 1144445555544433211 1244555555554442 3333444444444444444
Q ss_pred CCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccc
Q 048194 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF 471 (558)
Q Consensus 392 ~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L 471 (558)
.+|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|.+++ +|.. +.+|
T Consensus 376 -----~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l------------------~~~L 424 (788)
T PRK15387 376 -----SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML------------------PSGL 424 (788)
T ss_pred -----cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc------------------hhhh
Confidence 22221 1235555555555542 3321 2345555555555442 2321 2234
Q ss_pred eEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccc
Q 048194 472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS 511 (558)
Q Consensus 472 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 511 (558)
+.|++++|+++ .+|..+..+++|+.|++++|++++..+.
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 44455555444 2344444455555555555555444443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.87 E-value=4.9e-21 Score=202.49 Aligned_cols=353 Identities=18% Similarity=0.223 Sum_probs=207.7
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCCCccc----------------eEeCCCCCEEEEE
Q 048194 8 FAINIAFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSG----------------VDCDEAGHVIGLD 71 (558)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~----------------~~c~~~~~v~~L~ 71 (558)
++--+...++...++|.+.+.++.+.+.+++........|+.++++|.-.. |.|.. +.|+.+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~-~~vt~l~ 127 (754)
T PRK15370 49 CIAYLCHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG-KSVTYTR 127 (754)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC-Ccccccc
Confidence 344556677888899999999999999887764445567999999997544 45543 5666666
Q ss_pred cCCCCccccccCcccccCCCCCCEEECCCCCCCCC--ccchhh-----cCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 72 LSTESISGGIENAAILFSLHYLRSLNLARTSFNGT--QISSKL-----ANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 72 l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~-----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.-+................... .=+-..+.-.+. .-...+ .-..+...|++++++++ .+|..+. +.|+.
T Consensus 128 ~~g~~~~~~~~~~~~~~~~~~~-w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~ 203 (754)
T PRK15370 128 VTESEQASSASGSKDAVNYELI-WSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITT 203 (754)
T ss_pred cccccccccCCCCCChhhHHHH-HHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcE
Confidence 5553221111000000000000 000000000000 000111 11135677888888877 5666553 46888
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhh
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVY 224 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~ 224 (558)
|++++|.++ .+|.. + ..+|++|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+
T Consensus 204 L~Ls~N~Lt-sLP~~-l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l--------------- 260 (754)
T PRK15370 204 LILDNNELK-SLPEN-L--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERL--------------- 260 (754)
T ss_pred EEecCCCCC-cCChh-h--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhH---------------
Confidence 888888887 55431 2 247888888888877 5665443 46888888888877 455432
Q ss_pred hcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCC
Q 048194 225 SCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQS 304 (558)
Q Consensus 225 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~ 304 (558)
..+|+.|++++|+++ .+|.. + .++|+.|++++|+++.. |.. + .+.|+.|++++|+++.+|. ...+
T Consensus 261 ------~s~L~~L~Ls~N~L~-~LP~~-l--~~sL~~L~Ls~N~Lt~L-P~~-l--p~sL~~L~Ls~N~Lt~LP~-~l~~ 325 (754)
T PRK15370 261 ------PSALQSLDLFHNKIS-CLPEN-L--PEELRYLSVYDNSIRTL-PAH-L--PSGITHLNVQSNSLTALPE-TLPP 325 (754)
T ss_pred ------hCCCCEEECcCCccC-ccccc-c--CCCCcEEECCCCccccC-ccc-c--hhhHHHHHhcCCccccCCc-cccc
Confidence 246888888888887 55532 2 24788888888888743 222 1 3468888999998888876 1136
Q ss_pred CCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCc
Q 048194 305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNN 384 (558)
Q Consensus 305 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~ 384 (558)
+|+.|++++|.+++ +|..+. ++|+.|++++|.++.++... .+.|+.|++++|.++
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l~----~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt------------------- 380 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASLP----PELQVLDVSKNQITVLPETL-PPTITTLDVSRNALT------------------- 380 (754)
T ss_pred cceeccccCCcccc-CChhhc----CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCC-------------------
Confidence 78888888888864 565442 24777777777665433211 234555555554443
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCccc----ccCCCCCEEECCCCcCc
Q 048194 385 FTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI----AKCKMLEVLNLGNNQFS 443 (558)
Q Consensus 385 ~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~i~ 443 (558)
.+|..+. ..|+.|++++|++. .+|..+ ..++.+..|++.+|+++
T Consensus 381 ------------~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 381 ------------NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ------------CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2333222 24666666666665 334332 33466667777777665
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=6.5e-24 Score=196.48 Aligned_cols=405 Identities=19% Similarity=0.163 Sum_probs=231.5
Q ss_pred CCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEeccc-ccccccccchhhcCCCCccEE
Q 048194 92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSF-NQFSGSISSIRWEHLLNLVCA 170 (558)
Q Consensus 92 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L 170 (558)
.-..++|..|.++.. .+..|+.+++||.|||++|.|+..-|.+|.+++.|..|-+.+ |+|+ .+|+..|.++..|+-|
T Consensus 68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 567789999999987 778999999999999999999988999999999987776665 9998 7877789999999999
Q ss_pred EccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC-
Q 048194 171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ- 249 (558)
Q Consensus 171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~- 249 (558)
.+..|++.-...+.+..+++|..|.+.+|.+...--..+ ..+..++.+.+..|.+...-.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf-------------------~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF-------------------QGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc-------------------cchhccchHhhhcCcccccccc
Confidence 999999998888889999999999999998873322233 556667777776665321100
Q ss_pred ----------hhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCC-CCCCCCC--CCCCCCCCEEecCCCcc
Q 048194 250 ----------LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC-KLREIPN--LKNQSQLQYLYLSENQI 316 (558)
Q Consensus 250 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~--~~~~~~L~~L~l~~n~l 316 (558)
...++.+.-..-..+.+.++....+..+......+..-..+.+ .....|. |..+++|+.|++++|++
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 0111122222222233333332222221111111111111222 2223344 66677777777777777
Q ss_pred cccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCCCCC---CCcEEEccCCcccccCCC
Q 048194 317 SREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQLPN---NPIYIDFSNNNFTSSIPA 391 (558)
Q Consensus 317 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~l~l~~n~~~~~~~~ 391 (558)
++..+.+|..... +++|.|..|++..+... .++..|+.|++.+|+|+...|..+. +|..+.+-.|.+.-.=
T Consensus 287 ~~i~~~aFe~~a~--l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC-- 362 (498)
T KOG4237|consen 287 TRIEDGAFEGAAE--LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC-- 362 (498)
T ss_pred chhhhhhhcchhh--hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc--
Confidence 6666666666555 67777777766655433 3366666666666666543333222 3334444333332100
Q ss_pred CCccCCCCCCCCCCCCCCEE--ECcCCcCCccCCcccccCCCCCEEECCCCcCc---ccCCccccCceeeccccchhhhh
Q 048194 392 DTVNGTLPDTFPRNCLLQTL--DLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS---DKFPCSLYDAPITIKGLDIKLQK 466 (558)
Q Consensus 392 ~~~~~~~p~~~~~~~~L~~L--~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~---~~~p~~~~~~~~~~~~~~~~~~~ 466 (558)
.|..| .+.+....+..| ...-..++.+.++...+. ...|++..-.+ .. ..-.
T Consensus 363 ---------------~l~wl~~Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~-----s~-~cP~ 419 (498)
T KOG4237|consen 363 ---------------RLAWLGEWLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLT-----SS-PCPP 419 (498)
T ss_pred ---------------chHHHHHHHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCC-----CC-CCCC
Confidence 00000 000011000000 011112333444433221 11111110000 00 0000
Q ss_pred hhccceEE-ECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCE
Q 048194 467 ILNIFTSI-DFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSY 545 (558)
Q Consensus 467 ~~~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 545 (558)
.++.+.+. .-|+..++ .+|..+ ...-.+|++.+|.++ .+|.+ .+.+| .+|+++|++....-..|.++++|.+
T Consensus 420 ~c~c~~tVvRcSnk~lk-~lp~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~t 492 (498)
T KOG4237|consen 420 PCTCLDTVVRCSNKLLK-LLPRGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLST 492 (498)
T ss_pred CcchhhhhHhhcccchh-hcCCCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhhe
Confidence 12222222 22222222 344444 345678889999988 77776 66777 8899999887656677888999999
Q ss_pred EeCcCC
Q 048194 546 LNLSYN 551 (558)
Q Consensus 546 L~l~~n 551 (558)
|-+++|
T Consensus 493 lilsyn 498 (498)
T KOG4237|consen 493 LILSYN 498 (498)
T ss_pred eEEecC
Confidence 988886
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1.2e-19 Score=192.05 Aligned_cols=246 Identities=27% Similarity=0.374 Sum_probs=173.3
Q ss_pred CCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEe
Q 048194 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLY 310 (558)
Q Consensus 232 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~ 310 (558)
.+...|+++++.++ .+|.. + .++++.|++++|+++.. |.. + .++|+.|++++|+++.+|. + ..+|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~-I--p~~L~~L~Ls~N~LtsL-P~~-l--~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPAC-I--PEQITTLILDNNELKSL-PEN-L--QGNIKTLYANSNQLTSIPATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcc-c--ccCCcEEEecCCCCCcC-Chh-h--ccCCCEEECCCCccccCChhh--hccccEEE
Confidence 45788999988887 56632 2 25788999999988843 333 2 3589999999999998886 3 34789999
Q ss_pred cCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCC
Q 048194 311 LSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIP 390 (558)
Q Consensus 311 l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 390 (558)
+++|.+. .+|..+. .+|+.|++++|.+..++... +++|+.|++++|++++.....+.+++.|++++|.++
T Consensus 248 Ls~N~L~-~LP~~l~----s~L~~L~Ls~N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt---- 317 (754)
T PRK15370 248 LSINRIT-ELPERLP----SALQSLDLFHNKISCLPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT---- 317 (754)
T ss_pred CcCCccC-cCChhHh----CCCCEEECcCCccCcccccc-CCCCcEEECCCCccccCcccchhhHHHHHhcCCccc----
Confidence 9999886 6676653 24889999998888654322 457888888888887543334567888888888877
Q ss_pred CCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhcc
Q 048194 391 ADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNI 470 (558)
Q Consensus 391 ~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 470 (558)
.+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|.++ .+|..+ .+.
T Consensus 318 ------~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-----------------p~~ 368 (754)
T PRK15370 318 ------ALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-----------------PPT 368 (754)
T ss_pred ------cCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-----------------cCC
Confidence 3443332 468888888888874 555443 67888888888876 345433 457
Q ss_pred ceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccc----cCCCCCCeecCCCCcCc
Q 048194 471 FTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF----GNLKRLESLDLSMNNLS 530 (558)
Q Consensus 471 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~L~~N~l~ 530 (558)
|+.|++++|.++. +|..+. .+|+.|++++|+++ .+|..+ ..++.+..|++.+|+++
T Consensus 369 L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 369 ITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 8888888888874 455443 36778888888887 555544 33467788888888876
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=8.8e-19 Score=172.52 Aligned_cols=87 Identities=23% Similarity=0.337 Sum_probs=38.9
Q ss_pred CCCCEEEcccccCCcccC---hhhhcCCCCCCEEEccCCcccccCCCc---ccCCCCCCCEEecCCCCCCC-----CCC-
Q 048194 232 QKLTPLLLSSNNLNGTVQ---LDKILSLGNLAKLDLSYNSLAVDESSR---NYSFSPMLELLNLASCKLRE-----IPN- 299 (558)
Q Consensus 232 ~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~l~~-----l~~- 299 (558)
++|+.|++++|.+++... ...+..+++|++|++++|.+.+..... .+...++|+.|++++|.++. +..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 445555555554442111 112334445555555555544211110 02223455555555554431 112
Q ss_pred CCCCCCCCEEecCCCcccc
Q 048194 300 LKNQSQLQYLYLSENQISR 318 (558)
Q Consensus 300 ~~~~~~L~~L~l~~n~l~~ 318 (558)
+..+++|++|++++|.+++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hcccCCCCEEecCCCcCch
Confidence 4455666677776666654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.1e-18 Score=171.92 Aligned_cols=288 Identities=22% Similarity=0.212 Sum_probs=170.6
Q ss_pred EEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCC---CcccCCCCCCCEEecCCCCCCCCC-------C-CCCCC
Q 048194 236 PLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES---SRNYSFSPMLELLNLASCKLREIP-------N-LKNQS 304 (558)
Q Consensus 236 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~l~~l~-------~-~~~~~ 304 (558)
.|+|..+.+++.-....+..+..|++++++++.++.... ...+...+.+++++++++.+...+ . +..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 466777777644444556677778888888888754321 111445666777777777655211 1 44566
Q ss_pred CCCEEecCCCcccccCChhHHhhcc-ccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCC
Q 048194 305 QLQYLYLSENQISREIPNWIWRVSV-VGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNN 383 (558)
Q Consensus 305 ~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n 383 (558)
+|+.|++++|.+.+..+..+..... ++|++|++++|.+.+.....- ...++..+.+++.+++++|
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l--------------~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL--------------AKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH--------------HHHHHhCCCCceEEEcCCC
Confidence 7777777777765444444332211 235666666655542111000 0001111234555555555
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCcc----CCcccccCCCCCEEECCCCcCcccCCccccCceeeccc
Q 048194 384 NFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGT----VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKG 459 (558)
Q Consensus 384 ~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~ 459 (558)
.+++... ..++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.....+
T Consensus 148 ~l~~~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l--------- 213 (319)
T cd00116 148 RLEGASC-----EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL--------- 213 (319)
T ss_pred cCCchHH-----HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH---------
Confidence 5442110 12334455667788888888888742 33445566788899998888764322211
Q ss_pred cchhhhhhhccceEEECCCCcccccCchhhcc-----cCCCCeeeCcCCcCcc----cccccccCCCCCCeecCCCCcCc
Q 048194 460 LDIKLQKILNIFTSIDFSTNNFKGPILEDVGL-----LKSLYGLNLSHNALTG----SIPSSFGNLKRLESLDLSMNNLS 530 (558)
Q Consensus 460 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~N~l~ 530 (558)
......+++|++|++++|.+++.....+.. .+.|++|++++|.+++ .+...+..+++|+.+++++|.++
T Consensus 214 --~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 214 --AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred --HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 112334678889999988887643333322 3789999999998862 23445667788999999999988
Q ss_pred cc----chhhhcCC-CCCCEEeCcCCcC
Q 048194 531 RA----IPSQLASL-YFLSYLNLSYNQL 553 (558)
Q Consensus 531 ~~----~~~~~~~l-~~L~~L~l~~n~l 553 (558)
.. ....+... ..|+++++.+|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 54 33444444 6788999888875
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=2e-18 Score=142.19 Aligned_cols=170 Identities=32% Similarity=0.523 Sum_probs=106.8
Q ss_pred CCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCC
Q 048194 296 EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP 375 (558)
Q Consensus 296 ~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 375 (558)
++|.+..+.+++.|.+++|+++ .+|..+..+.. |+.|++++|+++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~n--levln~~nnqie-------------------------------- 69 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLT-VVPPNIAELKN--LEVLNLSNNQIE-------------------------------- 69 (264)
T ss_pred hcccccchhhhhhhhcccCcee-ecCCcHHHhhh--hhhhhcccchhh--------------------------------
Confidence 4455556667777777777775 55555655554 555555555554
Q ss_pred cEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcc-cCCccccCce
Q 048194 376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD-KFPCSLYDAP 454 (558)
Q Consensus 376 ~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~p~~~~~~~ 454 (558)
++|.++++++.|+.|+++-|++. ..|..|+.+|.|++||+.+|.+.+ ..|..++.
T Consensus 70 ---------------------~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~-- 125 (264)
T KOG0617|consen 70 ---------------------ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-- 125 (264)
T ss_pred ---------------------hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH--
Confidence 34555555555666666666655 566666666666666666665543 33433332
Q ss_pred eeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccch
Q 048194 455 ITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534 (558)
Q Consensus 455 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 534 (558)
+..|+-|+|+.|.+. .+|..++++++|+.|.++.|.+. .+|.+++.++.|++|.+.+|+++ .+|
T Consensus 126 -------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlp 189 (264)
T KOG0617|consen 126 -------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLP 189 (264)
T ss_pred -------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecC
Confidence 566666677777666 56677777777777777777776 67777777777777777777776 455
Q ss_pred hhhcCC
Q 048194 535 SQLASL 540 (558)
Q Consensus 535 ~~~~~l 540 (558)
..++++
T Consensus 190 pel~~l 195 (264)
T KOG0617|consen 190 PELANL 195 (264)
T ss_pred hhhhhh
Confidence 555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=5.7e-18 Score=139.54 Aligned_cols=140 Identities=25% Similarity=0.414 Sum_probs=128.5
Q ss_pred CCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194 397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF 476 (558)
Q Consensus 397 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 476 (558)
.+|+.+..+.+|+.|++++|++. .+|..+..+++|+.|+++-|++. ..|..+.. ++.|+.|||
T Consensus 47 ~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs---------------~p~levldl 109 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS---------------FPALEVLDL 109 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC---------------Cchhhhhhc
Confidence 78888999999999999999998 88899999999999999999986 66776654 999999999
Q ss_pred CCCcccc-cCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCee
Q 048194 477 STNNFKG-PILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 477 s~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 555 (558)
++|++.. ..|..|..+..|+.|++++|.+. .+|..++++++|+.|.+++|.+. .+|..++.++.|++|.+.+|+++-
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence 9999864 57888999999999999999998 78999999999999999999997 799999999999999999999875
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=2e-13 Score=144.51 Aligned_cols=150 Identities=32% Similarity=0.501 Sum_probs=114.3
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCC-----CccceEeCCC-----CCEEEEEcCCCCccccccCccc
Q 048194 17 GQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCC-----DWSGVDCDEA-----GHVIGLDLSTESISGGIENAAI 86 (558)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~c~~~-----~~v~~L~l~~~~~~~~~~~~~~ 86 (558)
..+.++|.+||+++|+++..+. ..+|. + |+| .|.|+.|... ..|+.|+|+++.+.+..|. .
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~-----~~~W~-g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~ 437 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL-----RFGWN-G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--D 437 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc-----cCCCC-C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--H
Confidence 3456778999999999986432 24785 3 444 6999999532 2488888888888888877 7
Q ss_pred ccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcC-CC
Q 048194 87 LFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEH-LL 165 (558)
Q Consensus 87 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~ 165 (558)
+..+++|+.|+|++|.+.+. +|..++.+++|++|+|++|.+++.+|..++++++|++|+|++|.+++.+|. .+.. ..
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~ 515 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGRLL 515 (623)
T ss_pred HhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhccc
Confidence 88888888888888888877 888888888888888888888888888888888888888888888877765 2333 34
Q ss_pred CccEEEccCCcc
Q 048194 166 NLVCAVLSDNSL 177 (558)
Q Consensus 166 ~L~~L~L~~n~l 177 (558)
++..+++.+|..
T Consensus 516 ~~~~l~~~~N~~ 527 (623)
T PLN03150 516 HRASFNFTDNAG 527 (623)
T ss_pred cCceEEecCCcc
Confidence 556666666653
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=1.5e-13 Score=134.13 Aligned_cols=103 Identities=24% Similarity=0.447 Sum_probs=63.8
Q ss_pred CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE 487 (558)
Q Consensus 408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 487 (558)
|+.|.+++|+++ .+|+.++..+.|..|+.+.|.+. .+|..+. .+.+|+.|.+..|++.. +|.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~---------------~l~slr~l~vrRn~l~~-lp~ 206 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG---------------YLTSLRDLNVRRNHLED-LPE 206 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh---------------hHHHHHHHHHhhhhhhh-CCH
Confidence 667777777776 66666666667777777777664 3333332 25666666666666653 445
Q ss_pred hhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc
Q 048194 488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS 530 (558)
Q Consensus 488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 530 (558)
.+..+ .|..|+++.|++. .+|.+|.+|+.|++|-|.+|.+.
T Consensus 207 El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 55533 3566666666666 56666666666666666666665
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-12 Score=123.35 Aligned_cols=90 Identities=24% Similarity=0.217 Sum_probs=37.0
Q ss_pred CCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccC--CChhccCCCCCcEEecccccccccccchhhcCCCC
Q 048194 89 SLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQ--IPVQISRMARLVALDFSFNQFSGSISSIRWEHLLN 166 (558)
Q Consensus 89 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 166 (558)
++..|+...|.+..+...........|++++.|||++|-+..- +......+|+|+.|+++.|.+.....+..-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3444555555544443321112334455555555555544311 11122344555555555554442222211223444
Q ss_pred ccEEEccCCccC
Q 048194 167 LVCAVLSDNSLD 178 (558)
Q Consensus 167 L~~L~L~~n~l~ 178 (558)
|+.|.++.|.++
T Consensus 199 lK~L~l~~CGls 210 (505)
T KOG3207|consen 199 LKQLVLNSCGLS 210 (505)
T ss_pred hheEEeccCCCC
Confidence 444444444443
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=4.2e-12 Score=114.53 Aligned_cols=201 Identities=23% Similarity=0.232 Sum_probs=108.9
Q ss_pred hhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCc-ccccCChhHHhhccc
Q 048194 252 KILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ-ISREIPNWIWRVSVV 330 (558)
Q Consensus 252 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~ 330 (558)
.+..+++|+.+.++.+.-...... ...-|.|.++.+.+..+...|.+-....+.....+.-. .+|.....+.....
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i~~~--~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~- 285 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENIVDI--ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQE- 285 (490)
T ss_pred chHHhhhhheeeeeccchhheece--eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhh-
Confidence 345566677777776643321111 12235677777766655555543333333332222111 11211111111122
Q ss_pred cceEEEcCCccccccCCCCC-CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCC
Q 048194 331 GLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ 409 (558)
Q Consensus 331 ~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~ 409 (558)
|+++|+++|.|+.+..... .|.++.|++++|.+. .+. .+..+++|+
T Consensus 286 -LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-------------------------------~v~-nLa~L~~L~ 332 (490)
T KOG1259|consen 286 -LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-------------------------------TVQ-NLAELPQLQ 332 (490)
T ss_pred -hhhccccccchhhhhhhhhhccceeEEecccccee-------------------------------eeh-hhhhcccce
Confidence 7777777777776665544 566666666666654 222 255566677
Q ss_pred EEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc-Cchh
Q 048194 410 TLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP-ILED 488 (558)
Q Consensus 410 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~ 488 (558)
.||+++|.++.. -.+=..+-+.+.|.+++|.+. .++..+++-+|..||+++|++... -..+
T Consensus 333 ~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE-----------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~ 394 (490)
T KOG1259|consen 333 LLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIE-----------------TLSGLRKLYSLVNLDLSSNQIEELDEVNH 394 (490)
T ss_pred EeecccchhHhh-hhhHhhhcCEeeeehhhhhHh-----------------hhhhhHhhhhheeccccccchhhHHHhcc
Confidence 777777776632 222234566677777777664 234445566677777777766532 2345
Q ss_pred hcccCCCCeeeCcCCcCc
Q 048194 489 VGLLKSLYGLNLSHNALT 506 (558)
Q Consensus 489 ~~~l~~L~~L~l~~n~l~ 506 (558)
++++|.|+.+.|.+|.+.
T Consensus 395 IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cccccHHHHHhhcCCCcc
Confidence 677777777777777776
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=5.8e-11 Score=120.36 Aligned_cols=98 Identities=29% Similarity=0.397 Sum_probs=45.8
Q ss_pred ceEEEcCCccccccCCCCC-C-CccCEEEcccccCccc--CCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCC
Q 048194 332 LHCLNLSHNFLVGFQAPYS-I-PALRFIDLISNQLRGN--IHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL 407 (558)
Q Consensus 332 L~~L~ls~n~l~~~~~~~~-~-~~L~~L~l~~n~~~~~--~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~ 407 (558)
++.+++.+|.++...+... . ++|+.|++++|.+... ....+++|+.|++++|.++ .+|...+..+.
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~----------~l~~~~~~~~~ 187 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS----------DLPKLLSNLSN 187 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh----------hhhhhhhhhhh
Confidence 6666666666666666544 3 2566666666665522 1122333333333333333 33333334444
Q ss_pred CCEEECcCCcCCccCCcccccCCCCCEEECCCC
Q 048194 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNN 440 (558)
Q Consensus 408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 440 (558)
|+.|++++|++. .+|........|+++.+++|
T Consensus 188 L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 555555555554 33333333333445555544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=4.7e-11 Score=103.51 Aligned_cols=126 Identities=25% Similarity=0.276 Sum_probs=47.3
Q ss_pred CCCCCCCEEECcCCcCCccCCcccc-cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194 403 PRNCLLQTLDLNGNRPQGTVPKSIA-KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF 481 (558)
Q Consensus 403 ~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 481 (558)
.+...+++|+|++|.++. + +.++ .+.+|+.|++++|.|+.. +.+..++.|++|++++|.+
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l-----------------~~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL-----------------EGLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S-------------------TT----TT--EEE--SS--
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc-----------------cCccChhhhhhcccCCCCC
Confidence 344567888888888873 2 2454 467888888888888732 2233478888888888888
Q ss_pred cccCchhh-cccCCCCeeeCcCCcCcccc-cccccCCCCCCeecCCCCcCcccc---hhhhcCCCCCCEEeC
Q 048194 482 KGPILEDV-GLLKSLYGLNLSHNALTGSI-PSSFGNLKRLESLDLSMNNLSRAI---PSQLASLYFLSYLNL 548 (558)
Q Consensus 482 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l 548 (558)
+... ..+ ..+++|++|++++|+|.... -..+..+++|+.|++.+|+++..- ...+..+++|+.||-
T Consensus 77 ~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 77 SSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred Cccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8543 334 46888888999888886422 245677888888999988887431 133556788888874
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=2.1e-12 Score=126.26 Aligned_cols=194 Identities=25% Similarity=0.308 Sum_probs=146.7
Q ss_pred CCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEc
Q 048194 281 SPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDL 359 (558)
Q Consensus 281 ~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l 359 (558)
+..-...+++.|++.++|. +..+..|+.+.+..|.+. .+|..+..+.. |..++|+.|+++-.+.....--|+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~--lt~l~ls~NqlS~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEA--LTFLDLSSNQLSHLPDGLCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhH--HHHhhhccchhhcCChhhhcCcceeEEE
Confidence 3445567777787777777 666677777777777774 67777777776 7777777777776665533222555555
Q ss_pred ccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCC
Q 048194 360 ISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGN 439 (558)
Q Consensus 360 ~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 439 (558)
++|+++ .+|+.++....|..||.+.|.+. .+|..++.+.+|+.|.+..
T Consensus 151 sNNkl~-------------------------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 151 SNNKLT-------------------------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred ecCccc-------------------------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence 555543 78888888889999999999998 7888899999999999999
Q ss_pred CcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccC---C
Q 048194 440 NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGN---L 516 (558)
Q Consensus 440 n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~---l 516 (558)
|++.. +|.++. .-.|..||+|+|++. .+|..|-.|.+|++|.|.+|.+. ..|..+.. .
T Consensus 199 n~l~~-lp~El~----------------~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkV 259 (722)
T KOG0532|consen 199 NHLED-LPEELC----------------SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKV 259 (722)
T ss_pred hhhhh-CCHHHh----------------CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccce
Confidence 99874 555443 235889999999998 58899999999999999999998 66665533 3
Q ss_pred CCCCeecCCCCc
Q 048194 517 KRLESLDLSMNN 528 (558)
Q Consensus 517 ~~L~~L~L~~N~ 528 (558)
.--+.|+...|+
T Consensus 260 HIFKyL~~qA~q 271 (722)
T KOG0532|consen 260 HIFKYLSTQACQ 271 (722)
T ss_pred eeeeeecchhcc
Confidence 345678888775
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=1.2e-10 Score=118.09 Aligned_cols=196 Identities=28% Similarity=0.392 Sum_probs=119.6
Q ss_pred CEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCC-CCCCEEecCCCCCCCCCC-CCCCCCCCEEecC
Q 048194 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS-PMLELLNLASCKLREIPN-LKNQSQLQYLYLS 312 (558)
Q Consensus 235 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~ 312 (558)
..++...+.+.... ..+..++.++.|++.+|.+....+. .... ++|+.|++++|++..+|. +..+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~i~~~--~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNI--SELLELTNLTSLDLDNNNITDIPPL--IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCc--hhhhcccceeEEecCCcccccCccc--cccchhhcccccccccchhhhhhhhhccccccccccC
Confidence 35777777663222 2345557788888888887754442 2334 378888888888888864 7888888888888
Q ss_pred CCcccccCChhHHhhccccceEEEcCCccccccCCCCC-CCccCEEEcccccCcccCCC--CCCCCcEEEccCCcccccC
Q 048194 313 ENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQ--LPNNPIYIDFSNNNFTSSI 389 (558)
Q Consensus 313 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~~~~~--~~~~l~~l~l~~n~~~~~~ 389 (558)
+|++. .+|........ |+.|++++|.+..++.... ...|+++.+++|.+...+.. ...++..+.+.+|++.
T Consensus 172 ~N~l~-~l~~~~~~~~~--L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~--- 245 (394)
T COG4886 172 FNDLS-DLPKLLSNLSN--LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE--- 245 (394)
T ss_pred Cchhh-hhhhhhhhhhh--hhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee---
Confidence 88875 45544434444 7888888888877777643 44577777777743322211 1334445555555554
Q ss_pred CCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCcc
Q 048194 390 PADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCS 449 (558)
Q Consensus 390 ~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~ 449 (558)
.++..++.++.+++|++++|.++...+ ++.+.+++.|++++|.+....|..
T Consensus 246 -------~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 246 -------DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -------eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 234455555556666666666653222 555666666666666665544443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-11 Score=116.43 Aligned_cols=110 Identities=30% Similarity=0.340 Sum_probs=64.6
Q ss_pred cCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC--CCCC-CCCCCCCCEEecCCCcccccCChhHHhhccc
Q 048194 254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR--EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVV 330 (558)
Q Consensus 254 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 330 (558)
..+++|+.|+++.|++........-..+++|+.|.++.|.++ ++.. +..+|+|+.|++.+|.....-.....-...
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~- 247 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT- 247 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH-
Confidence 345555555555555542222222234566777777777776 3333 556777888888777422222222222333
Q ss_pred cceEEEcCCccccccCCC--C-CCCccCEEEcccccCc
Q 048194 331 GLHCLNLSHNFLVGFQAP--Y-SIPALRFIDLISNQLR 365 (558)
Q Consensus 331 ~L~~L~ls~n~l~~~~~~--~-~~~~L~~L~l~~n~~~ 365 (558)
|++|||++|++.+.... . .+|.|..|+++.+.+.
T Consensus 248 -L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 248 -LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred -HhhccccCCcccccccccccccccchhhhhccccCcc
Confidence 88888888888776643 2 2778888888777765
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.10 E-value=1.4e-10 Score=122.94 Aligned_cols=108 Identities=31% Similarity=0.504 Sum_probs=75.0
Q ss_pred CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE 487 (558)
Q Consensus 408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 487 (558)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..+.. +++|+.|+|++|++++.+|.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~---------------l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS---------------ITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC---------------CCCCCEEECCCCCCCCCCch
Confidence 566777777777777777777777777777777777776665543 66777777777777777777
Q ss_pred hhcccCCCCeeeCcCCcCcccccccccCC-CCCCeecCCCCcCc
Q 048194 488 DVGLLKSLYGLNLSHNALTGSIPSSFGNL-KRLESLDLSMNNLS 530 (558)
Q Consensus 488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~N~l~ 530 (558)
.++.+++|+.|+|++|++++.+|..+... .++..+++.+|...
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 77777777777777777777777666543 35566667766543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2.9e-11 Score=109.18 Aligned_cols=127 Identities=27% Similarity=0.263 Sum_probs=56.3
Q ss_pred CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE 487 (558)
Q Consensus 408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 487 (558)
|+++|+++|.++ .+.+.+.-.|.++.|++++|.+.... ....+++|+.||||+|.++.. ..
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~-----------------nLa~L~~L~~LDLS~N~Ls~~-~G 346 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ-----------------NLAELPQLQLLDLSGNLLAEC-VG 346 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeeeh-----------------hhhhcccceEeecccchhHhh-hh
Confidence 445555555544 33344444455555555555544211 112244555555555544421 11
Q ss_pred hhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCccc-chhhhcCCCCCCEEeCcCCcCee
Q 048194 488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA-IPSQLASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 555 (558)
.=..+.+.+.|.|+.|.|. .-.+++.+-+|..||+++|++... --..+++++-|+.+.|.+|++.+
T Consensus 347 wh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 1223444455555555443 223344444555555555554321 11334445555555555555544
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=9.5e-12 Score=114.89 Aligned_cols=117 Identities=22% Similarity=0.276 Sum_probs=63.1
Q ss_pred CCCCCCCCEEECcCCcCCcc----CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECC
Q 048194 402 FPRNCLLQTLDLNGNRPQGT----VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFS 477 (558)
Q Consensus 402 ~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 477 (558)
+...+.|+.+.+..|.+... +...+.+++.|++|||..|.++......+. ..+..+++|++|+++
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La-----------kaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-----------KALSSWPHLRELNLG 249 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-----------HHhcccchheeeccc
Confidence 34445566666666665421 223456667777777777666533222211 122335566666666
Q ss_pred CCcccccCchhh-----cccCCCCeeeCcCCcCccc----ccccccCCCCCCeecCCCCcC
Q 048194 478 TNNFKGPILEDV-----GLLKSLYGLNLSHNALTGS----IPSSFGNLKRLESLDLSMNNL 529 (558)
Q Consensus 478 ~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l 529 (558)
+|.+.......| ...|+|+.|.+.+|.|+.. +..++...+.|++|+|++|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666654433333 2256666666666666521 223344456666666666666
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1e-10 Score=101.38 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=0.0
Q ss_pred CCcEEeccccccc
Q 048194 141 RLVALDFSFNQFS 153 (558)
Q Consensus 141 ~L~~L~L~~n~~~ 153 (558)
++++|+|++|.|+
T Consensus 20 ~~~~L~L~~n~I~ 32 (175)
T PF14580_consen 20 KLRELNLRGNQIS 32 (175)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 3444444444444
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=1.4e-11 Score=113.69 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=19.1
Q ss_pred CCCCCCEEEcccccCCc---ccChhhhcCCCCCCEEEccCCccc
Q 048194 230 RTQKLTPLLLSSNNLNG---TVQLDKILSLGNLAKLDLSYNSLA 270 (558)
Q Consensus 230 ~~~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~ 270 (558)
..+.|+.+.+..|.+.. ......+..+++|+.||+..|-++
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 33455555555554431 011233445555555555555544
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.8e-09 Score=117.08 Aligned_cols=83 Identities=22% Similarity=0.173 Sum_probs=40.8
Q ss_pred CCCEEeCcCCc--CccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEE
Q 048194 117 SLTYLNLSDAG--FAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQL 194 (558)
Q Consensus 117 ~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 194 (558)
+|++|-+.+|. +....+..|..++.|+.|||++|.-.+.+|. .++.+.+|++|+++++.+. .+|..+.++.+|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 45555555443 3322222344455555555555443334444 3555555555555555554 455555555555555
Q ss_pred eCccccC
Q 048194 195 QLANNQF 201 (558)
Q Consensus 195 ~l~~n~~ 201 (558)
++..+..
T Consensus 624 nl~~~~~ 630 (889)
T KOG4658|consen 624 NLEVTGR 630 (889)
T ss_pred ccccccc
Confidence 5555443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.1e-09 Score=77.94 Aligned_cols=60 Identities=50% Similarity=0.657 Sum_probs=32.9
Q ss_pred CCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcC
Q 048194 494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553 (558)
Q Consensus 494 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l 553 (558)
+|++|++++|+++...+..|..+++|+.|++++|+++...+..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555533334555555555555555555544445555555555555555553
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=4e-10 Score=114.35 Aligned_cols=104 Identities=32% Similarity=0.354 Sum_probs=55.2
Q ss_pred CCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceE
Q 048194 256 LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC 334 (558)
Q Consensus 256 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 334 (558)
+..++.+.+..|.+... ...+..+.+++.+++.+|++..+.. +..+++|++|++++|.|+...+ +..+.. |+.
T Consensus 71 l~~l~~l~l~~n~i~~~--~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~--L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKI--LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTL--LKE 144 (414)
T ss_pred hHhHHhhccchhhhhhh--hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccc--hhh
Confidence 33444444555544420 1113445566666666666666666 6666666666666666643322 222333 566
Q ss_pred EEcCCccccccCCCCCCCccCEEEcccccCc
Q 048194 335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLR 365 (558)
Q Consensus 335 L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~ 365 (558)
|++++|.++.+.....++.|+.+++++|++.
T Consensus 145 L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 145 LNLSGNLISDISGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred heeccCcchhccCCccchhhhcccCCcchhh
Confidence 6666666655554444555555555555554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=1.9e-09 Score=76.83 Aligned_cols=61 Identities=39% Similarity=0.475 Sum_probs=51.6
Q ss_pred ccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcC
Q 048194 469 NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNL 529 (558)
Q Consensus 469 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l 529 (558)
++|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888877777888899999999999999877777889999999999998875
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=3.6e-09 Score=114.80 Aligned_cols=129 Identities=24% Similarity=0.244 Sum_probs=98.1
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCC--CCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCC
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTS--FNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARL 142 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 142 (558)
..++++.+.++.+..... -...+.|++|-+..|. +... ....|..++.|+.|||++|.--+.+|..++.+-+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred hheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 456667766666542221 2334478888888885 4433 34558889999999999887777899999999999
Q ss_pred cEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCcccc
Q 048194 143 VALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ 200 (558)
Q Consensus 143 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 200 (558)
|+|+++++.+. .+|. .++++..|.+|++..+.....+|.....+.+|++|.+....
T Consensus 598 ryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hcccccCCCcc-ccch-HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999999988 7776 68999999999999887665666767779999999887654
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=5.1e-10 Score=113.60 Aligned_cols=242 Identities=24% Similarity=0.248 Sum_probs=150.4
Q ss_pred CCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEE
Q 048194 280 FSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFID 358 (558)
Q Consensus 280 ~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~ 358 (558)
.+..++.+.+..|.++.+-. +..+.+++.+++.+|.+.. +...+..+.. |+.|++++|.|+.+.....++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~--L~~L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVN--LQVLDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhc--chheeccccccccccchhhccchhhhe
Confidence 35667777788888887444 8888899999999998863 3332444454 899999999998888877777788888
Q ss_pred cccccCcccCC-CCCCCCcEEEccCCcccccCCCCCccCCCCCC-CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEE
Q 048194 359 LISNQLRGNIH-QLPNNPIYIDFSNNNFTSSIPADTVNGTLPDT-FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN 436 (558)
Q Consensus 359 l~~n~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 436 (558)
+++|.+...-- ..+..++.+++++|.+. .+... ...+..++.+++.+|.+... ..+..+..+..++
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~----------~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNRIV----------DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLS 214 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcchhh----------hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhh
Confidence 88888873211 12556666666666665 22221 34455566666666666422 1233333444445
Q ss_pred CCCCcCcccCCccccCceeeccccchhhhhhhc--cceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194 437 LGNNQFSDKFPCSLYDAPITIKGLDIKLQKILN--IFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG 514 (558)
Q Consensus 437 l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 514 (558)
+..|.++..-+-. ... +|+.+++++|.+.. .+..+..+..+..|++.+|++.. -..+.
T Consensus 215 l~~n~i~~~~~l~-----------------~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~--~~~~~ 274 (414)
T KOG0531|consen 215 LLDNKISKLEGLN-----------------ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN--LEGLE 274 (414)
T ss_pred cccccceeccCcc-----------------cchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc--ccccc
Confidence 5555554322211 122 37778888887764 22556667777788888777762 22345
Q ss_pred CCCCCCeecCCCCcCccc---chhh-hcCCCCCCEEeCcCCcCeee
Q 048194 515 NLKRLESLDLSMNNLSRA---IPSQ-LASLYFLSYLNLSYNQLEGR 556 (558)
Q Consensus 515 ~l~~L~~L~L~~N~l~~~---~~~~-~~~l~~L~~L~l~~n~l~~~ 556 (558)
....+..+...+|++... .... ......++.+++.+|++...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 566677777777776521 1111 44566788888888876653
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.5e-10 Score=102.25 Aligned_cols=161 Identities=21% Similarity=0.148 Sum_probs=100.3
Q ss_pred CCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccc-cccccccchhhcCCCCccEE
Q 048194 92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFN-QFSGSISSIRWEHLLNLVCA 170 (558)
Q Consensus 92 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L 170 (558)
.|++|||++..++...+...++.|.+|+.|.|.++.+.+.+...+++-.+|+.|+++.+ .++.......+++++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58888888887766556666788888888888888888888888888888888888875 34433344457888888888
Q ss_pred EccCCccCccCCcccc--CCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCccc
Q 048194 171 VLSDNSLDGSIPRSMF--EFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV 248 (558)
Q Consensus 171 ~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 248 (558)
+++.|.+.......+. --++|+.|++++++-.-... . ++-+..+++++.+|||++|.....-
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-h---------------~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-H---------------LSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh-H---------------HHHHHHhCCceeeeccccccccCch
Confidence 8888876533222111 13567778887765320000 0 0001156667777777665422121
Q ss_pred ChhhhcCCCCCCEEEccCCc
Q 048194 249 QLDKILSLGNLAKLDLSYNS 268 (558)
Q Consensus 249 ~~~~~~~l~~L~~L~l~~n~ 268 (558)
-...+.+++-|++|.++.|.
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHHHHHhcchheeeehhhhc
Confidence 12334455556666555553
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.1e-10 Score=100.33 Aligned_cols=60 Identities=23% Similarity=0.137 Sum_probs=33.8
Q ss_pred CCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCcccc
Q 048194 141 RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ 200 (558)
Q Consensus 141 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 200 (558)
.|++|||++..++...-...++.+.+|+.|.+.++++++.+...+.+-.+|+.|+++.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence 466666666555533322235556666666666666665555555566666666666553
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.55 E-value=1.1e-07 Score=61.75 Aligned_cols=41 Identities=46% Similarity=0.891 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCcccCCCCCC--CCCCCccceEeC
Q 048194 20 QSDQQTLLLQLKSSLTFDPSSSVKLMQWRQS--TDCCDWSGVDCD 62 (558)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~--~~~c~~~~~~c~ 62 (558)
+.+|++||++||+++..++.. .+.+|+.. .++|.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~--~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSG--VLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-C--CCTT--TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCc--ccccCCCcCCCCCeeeccEEeC
Confidence 357999999999999976532 78999986 799999999995
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=8.5e-08 Score=87.10 Aligned_cols=84 Identities=24% Similarity=0.384 Sum_probs=41.7
Q ss_pred CCCCCEEeCcCCcCcc--CCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCcc-CCccccCCCCC
Q 048194 115 ISSLTYLNLSDAGFAG--QIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGS-IPRSMFEFPML 191 (558)
Q Consensus 115 l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L 191 (558)
+..++.+||.+|.+++ .+...+.+||.|++|+++.|++...|.... ....+|++|.|.+..+.=. ....+..+|++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4455566666665541 122334456666666666666654442211 2345566666655544311 22233455666
Q ss_pred CEEeCccc
Q 048194 192 QQLQLANN 199 (558)
Q Consensus 192 ~~L~l~~n 199 (558)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 66666555
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=3.6e-09 Score=106.83 Aligned_cols=126 Identities=27% Similarity=0.257 Sum_probs=56.2
Q ss_pred CCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCc
Q 048194 118 LTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLA 197 (558)
Q Consensus 118 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 197 (558)
|...+.++|.+. ..-.++.-++.|+.|+|++|+++ ... .+..++.|++|||++|.+. .+|..=..-.+|+.|+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 334444444443 23333444455555555555554 222 2445555555555555554 233211111125555555
Q ss_pred cccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcc
Q 048194 198 NNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL 269 (558)
Q Consensus 198 ~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 269 (558)
+|.++.. -.. .++++|+.||+++|-+.+.-....+..+..|+.|++.+|.+
T Consensus 241 nN~l~tL-~gi--------------------e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL-RGI--------------------ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh-hhH--------------------HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5544311 110 44555555555555554433333344444555555555544
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=1e-08 Score=103.53 Aligned_cols=83 Identities=39% Similarity=0.276 Sum_probs=35.3
Q ss_pred hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccch-hhhcCCCCCCEE
Q 048194 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP-SQLASLYFLSYL 546 (558)
Q Consensus 468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L 546 (558)
++.|++|||++|.+....-.+..+++ |+.|.+++|.++. -..+.++.+|+.||+++|-+.+.-- ..+..+.+|+.|
T Consensus 208 l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred cccccccccccchhccccccchhhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 44444444444444432222233333 5555555555441 1234455555555555554432110 112333445555
Q ss_pred eCcCCcC
Q 048194 547 NLSYNQL 553 (558)
Q Consensus 547 ~l~~n~l 553 (558)
+|.||++
T Consensus 285 ~LeGNPl 291 (1096)
T KOG1859|consen 285 WLEGNPL 291 (1096)
T ss_pred hhcCCcc
Confidence 5555544
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=1.6e-07 Score=85.42 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=19.7
Q ss_pred CCCCCCCCEEECcCCcCCccCC------cccccCCCCCEEECC
Q 048194 402 FPRNCLLQTLDLNGNRPQGTVP------KSIAKCKMLEVLNLG 438 (558)
Q Consensus 402 ~~~~~~L~~L~l~~n~l~~~~~------~~l~~l~~L~~L~l~ 438 (558)
+.++++|..|.++++++.+.+- -.++.+++++.|+=+
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 4555666666666666643221 124556666665433
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=9.4e-07 Score=79.44 Aligned_cols=238 Identities=18% Similarity=0.143 Sum_probs=128.8
Q ss_pred CCCCCCEEecCCCcccccCChhHHhh--ccccceEEEcCCcccccc-----------C-CCCCCCccCEEEcccccCccc
Q 048194 302 NQSQLQYLYLSENQISREIPNWIWRV--SVVGLHCLNLSHNFLVGF-----------Q-APYSIPALRFIDLISNQLRGN 367 (558)
Q Consensus 302 ~~~~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~ls~n~l~~~-----------~-~~~~~~~L~~L~l~~n~~~~~ 367 (558)
.+..++.+++|+|.+......+++.. ...+|+..+++.-..... . ...+||+|+.++++.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 45567777777777755544444432 123366666665322111 1 114589999999999988755
Q ss_pred CCCC-------CCCCcEEEccCCcccccCCCCCccCCCC---------CCCCCCCCCCEEECcCCcCCccCCc-----cc
Q 048194 368 IHQL-------PNNPIYIDFSNNNFTSSIPADTVNGTLP---------DTFPRNCLLQTLDLNGNRPQGTVPK-----SI 426 (558)
Q Consensus 368 ~~~~-------~~~l~~l~l~~n~~~~~~~~~~~~~~~p---------~~~~~~~~L~~L~l~~n~l~~~~~~-----~l 426 (558)
.|.. -..+..|.+++|.+.- +-- +.+. .-...-+.|+..+...|++.. .+. .+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp-~aG----~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l 181 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGP-IAG----GRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALL 181 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCc-cch----hHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHH
Confidence 4432 2356677777776531 000 0111 011223456677777776642 221 12
Q ss_pred ccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC----chhhcccCCCCeeeCcC
Q 048194 427 AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI----LEDVGLLKSLYGLNLSH 502 (558)
Q Consensus 427 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l~~ 502 (558)
..-..|+++.+..|.|....-. -+.......+++|+.||+..|-++... ...+..++.|++|.+..
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~----------~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVT----------MLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred HhhcCceeEEeeecCcCcchhH----------HHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 2224667777777665422111 111233345777888888888776432 22344466778888888
Q ss_pred CcCcccccccc------cCCCCCCeecCCCCcCcccc------hhhh-cCCCCCCEEeCcCCcCee
Q 048194 503 NALTGSIPSSF------GNLKRLESLDLSMNNLSRAI------PSQL-ASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 503 n~l~~~~~~~l------~~l~~L~~L~L~~N~l~~~~------~~~~-~~l~~L~~L~l~~n~l~~ 555 (558)
|-++.....++ ...++|..|-..+|...+.+ +... ..++-|..|.+.+|+|.+
T Consensus 252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 87664433322 13367777777777654322 2111 235667777777777653
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=1.1e-07 Score=76.34 Aligned_cols=129 Identities=24% Similarity=0.342 Sum_probs=73.1
Q ss_pred CCEEECcCCcCCccCCcccc---cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc
Q 048194 408 LQTLDLNGNRPQGTVPKSIA---KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP 484 (558)
Q Consensus 408 L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 484 (558)
+..++|+.|++. .+++... ....|+.+++++|.+. .+|..+. .+++..++|++++|.+..
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft--------------~kf~t~t~lNl~~neisd- 91 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFT--------------IKFPTATTLNLANNEISD- 91 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHh--------------hccchhhhhhcchhhhhh-
Confidence 445666666665 3444333 3334555677777665 3333322 235566777777777763
Q ss_pred CchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCee
Q 048194 485 ILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 485 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 555 (558)
+|..++.++.|+.|+++.|.+. ..|.-+..+.++-.||.-+|.+. .+|..+-.-+..-..++.++++.|
T Consensus 92 vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 92 VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence 5566777777777777777776 56666666777777777777665 333222222233333445555443
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.09 E-value=9.2e-08 Score=90.97 Aligned_cols=281 Identities=19% Similarity=0.068 Sum_probs=150.0
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCC-ccchhhcCCCCCCEEeCcCC-cCccCCChhc-cCCCC
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGT-QISSKLANISSLTYLNLSDA-GFAGQIPVQI-SRMAR 141 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~ 141 (558)
++++++.++|+.-.+.-+.......++++++|++.++..... .....-..+++|++|++..| .++...-..+ ..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 456666666665544433333445666666666666542222 11122234666777777664 3333222222 34667
Q ss_pred CcEEeccccc-ccccccchhhcCCCCccEEEccCCccCccCCccc----cCCCCCCEEeCccccCCCCCCccccccccch
Q 048194 142 LVALDFSFNQ-FSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSM----FEFPMLQQLQLANNQFGGSIPRFSNASSSAL 216 (558)
Q Consensus 142 L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 216 (558)
|++|+++++. +++..-....+++..++.+.+.+|.-. ....+ ..++-+..+++..|.......
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~---------- 285 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDED---------- 285 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchH----------
Confidence 7777776653 232221113455555666655544211 00111 123445555555543211110
Q ss_pred hhhhchhhhcccCCCCCCCEEEcccccCCcccChhh-hcCCCCCCEEEccCCc-ccccCCCcccCCCCCCCEEecCCCCC
Q 048194 217 DTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDK-ILSLGNLAKLDLSYNS-LAVDESSRNYSFSPMLELLNLASCKL 294 (558)
Q Consensus 217 ~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l 294 (558)
+..+...+..|+.|+.+++...+..+... -.+..+|+.+.+..++ +++......-.+++.|+.+++..+..
T Consensus 286 -------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 286 -------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred -------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 11112456778888888765433333222 3467889999888885 44444444345778899999988855
Q ss_pred C---CCCC-CCCCCCCCEEecCCCccc-ccCChhHHh--hccccceEEEcCCccccccCCC---CCCCccCEEEcccccC
Q 048194 295 R---EIPN-LKNQSQLQYLYLSENQIS-REIPNWIWR--VSVVGLHCLNLSHNFLVGFQAP---YSIPALRFIDLISNQL 364 (558)
Q Consensus 295 ~---~l~~-~~~~~~L~~L~l~~n~l~-~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~~L~~L~l~~n~~ 364 (558)
. ++.. -.+++.|+.+.+++|... +.....+.. .....++.+.++++........ ..+++|+.+++-.++-
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 4 3444 567888999999988643 221111111 2334478888888877544332 2377888877776653
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=7.6e-07 Score=80.01 Aligned_cols=136 Identities=19% Similarity=0.297 Sum_probs=73.3
Q ss_pred CCEEEEEcCCCCccccccC--cccccCCCCCCEEECCCCCCCCC--ccc-------hhhcCCCCCCEEeCcCCcCccCCC
Q 048194 65 GHVIGLDLSTESISGGIEN--AAILFSLHYLRSLNLARTSFNGT--QIS-------SKLANISSLTYLNLSDAGFAGQIP 133 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~--~~~-------~~~~~l~~L~~L~L~~n~l~~~~p 133 (558)
..++.++||||.+...... ...++.-++|+..+++.--.... .++ ..+-+||+|+..+|++|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 5678888888877532211 01455667777777764311110 122 334567788888888887765555
Q ss_pred hh----ccCCCCCcEEecccccccccccch-------------hhcCCCCccEEEccCCccCccCCcc-----ccCCCCC
Q 048194 134 VQ----ISRMARLVALDFSFNQFSGSISSI-------------RWEHLLNLVCAVLSDNSLDGSIPRS-----MFEFPML 191 (558)
Q Consensus 134 ~~----l~~l~~L~~L~L~~n~~~~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~-----l~~l~~L 191 (558)
.. +++-+.|++|.+++|.+. .+... ...+-|.|+++....|++.. .+.. +.....|
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~l 187 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENL 187 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCc
Confidence 43 445577777777777654 22110 12234556666666665541 1111 1122456
Q ss_pred CEEeCccccCC
Q 048194 192 QQLQLANNQFG 202 (558)
Q Consensus 192 ~~L~l~~n~~~ 202 (558)
+++.+..|.|.
T Consensus 188 k~vki~qNgIr 198 (388)
T COG5238 188 KEVKIQQNGIR 198 (388)
T ss_pred eeEEeeecCcC
Confidence 66666665543
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=2e-05 Score=77.20 Aligned_cols=50 Identities=8% Similarity=-0.016 Sum_probs=28.9
Q ss_pred ceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCC-CCCCCcEEEccCC
Q 048194 332 LHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQ-LPNNPIYIDFSNN 383 (558)
Q Consensus 332 L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~l~~n 383 (558)
++.|++++|.++.++. -.++|+.|.+++|.-...+|. .+.+|+.|++++|
T Consensus 54 l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 54 SGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred CCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence 7777777776666541 133577777766543333342 3446666666665
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=2.2e-06 Score=91.02 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=16.3
Q ss_pred cCCCCccEEEccCCccCccCCccccCCCCCCEEeCcccc
Q 048194 162 EHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ 200 (558)
Q Consensus 162 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 200 (558)
.++++|..||+++++++.. ..++.+++|+.|.+.+=.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe 206 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLE 206 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccCCC
Confidence 3444444444444444321 334444444444444433
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=7.4e-06 Score=53.22 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCCEEeCcCCcCccCCChhccCCCCCcEEeccccccc
Q 048194 117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFS 153 (558)
Q Consensus 117 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~ 153 (558)
+|++|++++|.++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 45555666666666666666666
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=6e-06 Score=53.64 Aligned_cols=36 Identities=44% Similarity=0.672 Sum_probs=16.8
Q ss_pred CCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc
Q 048194 494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS 530 (558)
Q Consensus 494 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 530 (558)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 34434455555555555555544
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.93 E-value=3.1e-07 Score=87.45 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=17.5
Q ss_pred hccceEEECCCCccc-ccCchhhcccCCCCeeeCcCCc
Q 048194 468 LNIFTSIDFSTNNFK-GPILEDVGLLKSLYGLNLSHNA 504 (558)
Q Consensus 468 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~ 504 (558)
+..|+.+.|+++... ......+..+++|+.+++-+++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 444555555555432 2233344445555555555553
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=2.6e-06 Score=68.63 Aligned_cols=87 Identities=28% Similarity=0.329 Sum_probs=73.1
Q ss_pred hhhccceEEECCCCcccccCchhh-cccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCC
Q 048194 466 KILNIFTSIDFSTNNFKGPILEDV-GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLS 544 (558)
Q Consensus 466 ~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 544 (558)
.....|+.++|++|.+... |..| ..++.++.|++++|.|+ .+|+++..++.|+.|+++.|.+. ..|.-+..+.+|-
T Consensus 50 ~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 3467788999999999964 4555 45679999999999999 78999999999999999999998 5677777799999
Q ss_pred EEeCcCCcCee
Q 048194 545 YLNLSYNQLEG 555 (558)
Q Consensus 545 ~L~l~~n~l~~ 555 (558)
.|+..+|.+..
T Consensus 127 ~Lds~~na~~e 137 (177)
T KOG4579|consen 127 MLDSPENARAE 137 (177)
T ss_pred HhcCCCCcccc
Confidence 99999887643
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=9.8e-05 Score=72.49 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=28.5
Q ss_pred cCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCC-CCCCCCC-CCCCCCCCEEecCCC
Q 048194 254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC-KLREIPN-LKNQSQLQYLYLSEN 314 (558)
Q Consensus 254 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~-~~~~~~L~~L~l~~n 314 (558)
..+.+++.|++++|.++.. | ...++|+.|.+.+| .++.+|. + .++|+.|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-P----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-C----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3456666666666655432 2 11334666666654 4455554 2 245666666655
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=2.9e-05 Score=67.08 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=80.8
Q ss_pred CCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194 90 LHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC 169 (558)
Q Consensus 90 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 169 (558)
+.+...+||++|.+... +.|..++.|.+|.+.+|.|+..-|.--.-+++|..|.+.+|.+.....-..+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 34677889999888654 557888899999999999985555544457889999999998873222224788899999
Q ss_pred EEccCCccCccC---CccccCCCCCCEEeCccccC
Q 048194 170 AVLSDNSLDGSI---PRSMFEFPMLQQLQLANNQF 201 (558)
Q Consensus 170 L~L~~n~l~~~~---~~~l~~l~~L~~L~l~~n~~ 201 (558)
|.+-+|.+...- --.+..+|+|+.||+.+-..
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 999998876321 12356789999999986543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=7.1e-06 Score=87.24 Aligned_cols=138 Identities=22% Similarity=0.246 Sum_probs=101.0
Q ss_pred CCEEEEEcCCCCcc-ccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCc
Q 048194 65 GHVIGLDLSTESIS-GGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLV 143 (558)
Q Consensus 65 ~~v~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 143 (558)
.++++|+++|.... ..++. ..-..||+|++|.+.+-.+....+.....++|+|+.||+++++++.. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~-kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPK-KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHH-HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 57888999886643 22332 13357899999999987775543556667899999999999999843 6789999999
Q ss_pred EEecccccccccccchhhcCCCCccEEEccCCccCccC--C----ccccCCCCCCEEeCccccCCCCC
Q 048194 144 ALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSI--P----RSMFEFPMLQQLQLANNQFGGSI 205 (558)
Q Consensus 144 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~~~~~~ 205 (558)
.|.+.+=.+.....-..+.++++|+.||+|........ . +.-..+|.|+.||.+++.+.+..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 99998877763222236889999999999987654221 1 11224899999999998876543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=6.3e-05 Score=65.08 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=23.6
Q ss_pred CCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC---CCCCCCCCEEecCCCcc
Q 048194 255 SLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN---LKNQSQLQYLYLSENQI 316 (558)
Q Consensus 255 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~---~~~~~~L~~L~l~~n~l 316 (558)
.++.|.+|.+.+|+|+...+.- -..+++|..|.+.+|.+..+.+ +..+++|++|.+-+|++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L-~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDL-DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred CccccceEEecCCcceeeccch-hhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 3334444444444443322221 2233344444444444332222 33444444444444443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=1.6e-05 Score=71.98 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=47.6
Q ss_pred hhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccc-ccccCCCCCCeecCCCCcCcccchh-----
Q 048194 462 IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIP-SSFGNLKRLESLDLSMNNLSRAIPS----- 535 (558)
Q Consensus 462 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~----- 535 (558)
++.+.+++.|+.|.||-|.++. ...+..|+.|++|+|..|.|.+..- ..+.++++|+.|.|..|.=.+..+.
T Consensus 34 Isic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~ 111 (388)
T KOG2123|consen 34 ISICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRK 111 (388)
T ss_pred HHHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHH
Confidence 3444556666666666666653 3445667777777777776653211 2356667777777777665544332
Q ss_pred hhcCCCCCCEEe
Q 048194 536 QLASLYFLSYLN 547 (558)
Q Consensus 536 ~~~~l~~L~~L~ 547 (558)
.+.-+++|+.||
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 233455555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00022 Score=64.50 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=70.4
Q ss_pred cccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCC--cCccCCChhccCCCCCcEEecccccccc--cccchhh
Q 048194 86 ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDA--GFAGQIPVQISRMARLVALDFSFNQFSG--SISSIRW 161 (558)
Q Consensus 86 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~~~~--~~~~~~~ 161 (558)
....+..|+.|++.+..++.. ..+..+++|++|.++.| ++.+.++.-...+++|++|++++|++.. .++ .+
T Consensus 38 l~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl 112 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PL 112 (260)
T ss_pred ccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hh
Confidence 344556667777766666554 44667778888888888 6665555555566888888888888762 222 35
Q ss_pred cCCCCccEEEccCCccCccC---CccccCCCCCCEEeCccc
Q 048194 162 EHLLNLVCAVLSDNSLDGSI---PRSMFEFPMLQQLQLANN 199 (558)
Q Consensus 162 ~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~l~~n 199 (558)
..+.+|..|++.+|..+..- -..+.-+++|++|+-...
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 66777888888887665311 112334677888776544
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.05 E-value=0.0017 Score=54.04 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=31.8
Q ss_pred hhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCC
Q 048194 111 KLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPM 190 (558)
Q Consensus 111 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 190 (558)
.|.++.+|+.+.+.. .+.......|.++++|+.+.+..+ +. .++...+.+++.++.+.+.. .+.......+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 344555555555543 233233334555555555555543 33 33333455555555555543 222122233344555
Q ss_pred CCEEeCcc
Q 048194 191 LQQLQLAN 198 (558)
Q Consensus 191 L~~L~l~~ 198 (558)
|+.+++..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 55555543
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.02 E-value=0.0024 Score=53.16 Aligned_cols=123 Identities=18% Similarity=0.244 Sum_probs=60.7
Q ss_pred CCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCc
Q 048194 401 TFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNN 480 (558)
Q Consensus 401 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 480 (558)
.|..+.+|+.+.+.. .+.......+..+++|+.+.+.++ +.......+ ..+++++.+.+.+ .
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F---------------~~~~~l~~i~~~~-~ 68 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF---------------SNCKSLESITFPN-N 68 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT---------------TT-TT-EEEEETS-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee---------------ecccccccccccc-c
Confidence 466677888888875 455555667788888888888764 432222222 2366788888865 4
Q ss_pred ccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCC
Q 048194 481 FKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLS 544 (558)
Q Consensus 481 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 544 (558)
+.......|..+++|+.+.+..+ +.......|.++ .|+.+.+.+ .+.......|.+.++|+
T Consensus 69 ~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 69 LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 44344566777888888888765 553445566676 888888876 44434556677766653
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=5.9e-05 Score=68.39 Aligned_cols=100 Identities=24% Similarity=0.185 Sum_probs=76.2
Q ss_pred CCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc
Q 048194 405 NCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP 484 (558)
Q Consensus 405 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 484 (558)
+.+.++|++.++.+.++ .....|+.|++|.|+-|.|+.. +.+..++.|++|+|..|.|...
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-----------------~pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-----------------APLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-----------------hhHHHHHHHHHHHHHhcccccH
Confidence 44678899999999743 3567899999999999999843 3345589999999999998753
Q ss_pred C-chhhcccCCCCeeeCcCCcCcccccc-----cccCCCCCCeec
Q 048194 485 I-LEDVGLLKSLYGLNLSHNALTGSIPS-----SFGNLKRLESLD 523 (558)
Q Consensus 485 ~-~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~l~~L~~L~ 523 (558)
. ..-+.++|+|+.|.|..|.=.+..+. -+.-+++|++||
T Consensus 79 dEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 79 DELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 2 23467889999999999976655443 245678888876
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00053 Score=62.11 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=7.1
Q ss_pred CCCCCCCCEEecCCCc
Q 048194 300 LKNQSQLQYLYLSENQ 315 (558)
Q Consensus 300 ~~~~~~L~~L~l~~n~ 315 (558)
+..+.+|..|++.+|.
T Consensus 112 l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhcchhhhhcccCC
Confidence 3344444444444444
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.13 E-value=0.0012 Score=68.86 Aligned_cols=114 Identities=24% Similarity=0.158 Sum_probs=73.1
Q ss_pred CCCCCCEEECCCCC-CCCCccchhhcCCCCCCEEeCcCC-cCccCCC----hhccCCCCCcEEeccccc-ccccccchhh
Q 048194 89 SLHYLRSLNLARTS-FNGTQISSKLANISSLTYLNLSDA-GFAGQIP----VQISRMARLVALDFSFNQ-FSGSISSIRW 161 (558)
Q Consensus 89 ~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p----~~l~~l~~L~~L~L~~n~-~~~~~~~~~~ 161 (558)
.++.|+.|.+..+. +....+-.....+++|+.|+++++ ......+ .....+++|+.|+++++. +++..-....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46888888888763 333222345667889999999873 2221222 233457889999999888 5533322123
Q ss_pred cCCCCccEEEccCCc-cCccCCccc-cCCCCCCEEeCccccCC
Q 048194 162 EHLLNLVCAVLSDNS-LDGSIPRSM-FEFPMLQQLQLANNQFG 202 (558)
Q Consensus 162 ~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~~~ 202 (558)
..+++|++|.+.++. +++..-..+ ..++.|++|+++++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 448899999988776 454333333 36788999999988654
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.18 E-value=0.0069 Score=32.56 Aligned_cols=18 Identities=67% Similarity=0.875 Sum_probs=8.0
Q ss_pred CCeecCCCCcCcccchhhh
Q 048194 519 LESLDLSMNNLSRAIPSQL 537 (558)
Q Consensus 519 L~~L~L~~N~l~~~~~~~~ 537 (558)
|+.|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.88 E-value=0.0088 Score=32.13 Aligned_cols=19 Identities=68% Similarity=0.770 Sum_probs=9.4
Q ss_pred CCeeeCcCCcCccccccccc
Q 048194 495 LYGLNLSHNALTGSIPSSFG 514 (558)
Q Consensus 495 L~~L~l~~n~l~~~~~~~l~ 514 (558)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.70 E-value=0.0077 Score=62.83 Aligned_cols=234 Identities=22% Similarity=0.151 Sum_probs=124.5
Q ss_pred CCEEEEEcCCCCcccc--ccCcccccCCCCCCEEECCCC-CCCCC-c--cchhhcCCCCCCEEeCcCCc-CccCCChhcc
Q 048194 65 GHVIGLDLSTESISGG--IENAAILFSLHYLRSLNLART-SFNGT-Q--ISSKLANISSLTYLNLSDAG-FAGQIPVQIS 137 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~L~~n-~~~~~-~--~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~ 137 (558)
+.++.+.+.++.-... ... .....++|+.|+++++ ..... . .......+++|+.|+++++. +++..-..++
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDA--LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred chhhHhhhcccccCChhhHHH--HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4555566655432211 122 4667889999999873 22111 0 12344567889999999887 6645444444
Q ss_pred -CCCCCcEEeccccc-ccccccchhhcCCCCccEEEccCCccC--ccCCccccCCCCCCEEeCccccCCCCCCccccccc
Q 048194 138 -RMARLVALDFSFNQ-FSGSISSIRWEHLLNLVCAVLSDNSLD--GSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASS 213 (558)
Q Consensus 138 -~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 213 (558)
.+++|++|.+.++. +++..-......++.|++|+++++... ..+.....++++|+.|.+........+... ..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~---~l 342 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDL---SL 342 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHH---HH
Confidence 38899999988887 564442214567888999999988753 112233345676666655443210000000 00
Q ss_pred cchhhhhc--hhhhcccCCCCCCCEEEcccccCCcccC-hhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecC
Q 048194 214 SALDTQIK--RVYSCLGLRTQKLTPLLLSSNNLNGTVQ-LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 290 (558)
Q Consensus 214 ~~l~~li~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 290 (558)
..... +. .........+++++.+.+..+... ... ...+..++.|+ ..+... ......++.|++.
T Consensus 343 ~~~~~-~~~d~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l~-~~l~~~----------~~~~~~l~~L~l~ 409 (482)
T KOG1947|consen 343 SGLLT-LTSDDLAELILRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNLT-ESLELR----------LCRSDSLRVLNLS 409 (482)
T ss_pred HHhhc-cCchhHhHHHHhcCCCcchhhhhhhhcc-CcchHHHhcCCcccc-hHHHHH----------hccCCccceEecc
Confidence 00000 00 011112256677777777776632 322 23444555552 111111 1112227888888
Q ss_pred CCCCCCCCC---CCC-CCCCCEEecCCCcc
Q 048194 291 SCKLREIPN---LKN-QSQLQYLYLSENQI 316 (558)
Q Consensus 291 ~n~l~~l~~---~~~-~~~L~~L~l~~n~l 316 (558)
.+....... ... +..++.+++.++..
T Consensus 410 ~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 410 DCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cCccccccchHHHhhhhhccccCCccCccc
Confidence 886554433 222 66778888888764
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.85 E-value=0.0023 Score=56.79 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=37.6
Q ss_pred hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEe
Q 048194 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLN 547 (558)
Q Consensus 468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 547 (558)
+...+.||++.|++.. ....|+-+..|+.|+++.|++. ..|..++....+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3444444444444432 2233344444444455544444 44444444444444444444443 3444444444444444
Q ss_pred CcCCcC
Q 048194 548 LSYNQL 553 (558)
Q Consensus 548 l~~n~l 553 (558)
+-+|++
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.67 E-value=0.00044 Score=70.58 Aligned_cols=123 Identities=23% Similarity=0.271 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCEEECcCCcCCc----cCCcccc----cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhc
Q 048194 398 LPDTFPRNCLLQTLDLNGNRPQG----TVPKSIA----KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILN 469 (558)
Q Consensus 398 ~p~~~~~~~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~ 469 (558)
+...+...+.++.++++.|.+.. .++..+. ...++++|.+.+|.++...-.. -.......+
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~-----------l~~~l~~~~ 232 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL-----------LDEVLASGE 232 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH-----------HHHHHhccc
Confidence 33444455667777777776632 1222333 3556777777777665110000 001112223
Q ss_pred c-ceEEECCCCccccc----Cchhhccc-CCCCeeeCcCCcCccc----ccccccCCCCCCeecCCCCcCcc
Q 048194 470 I-FTSIDFSTNNFKGP----ILEDVGLL-KSLYGLNLSHNALTGS----IPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 470 ~-L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
. +..+++..|.+.+. ..+.+..+ +.++.++++.|.|+.. +...+..++.++.+.+++|.+..
T Consensus 233 ~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 233 SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 45566666666533 12233344 5556777777766543 23344555666777777776654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.35 E-value=0.051 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=5.3
Q ss_pred CCCEEecCCCCCCCC
Q 048194 283 MLELLNLASCKLREI 297 (558)
Q Consensus 283 ~L~~L~l~~n~l~~l 297 (558)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=0.022 Score=49.76 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=52.5
Q ss_pred CCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccc-cCchhhc-ccCCCCeeeCcCC-cCcc
Q 048194 431 MLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKG-PILEDVG-LLKSLYGLNLSHN-ALTG 507 (558)
Q Consensus 431 ~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~-~l~~L~~L~l~~n-~l~~ 507 (558)
.++.++.++..|..+ ..+.++.++.++.|.+.+|.--+ -...-++ -.++|+.|++++| +||.
T Consensus 102 ~IeaVDAsds~I~~e---------------Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE---------------GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred eEEEEecCCchHHHH---------------HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 466777777666532 34445557777777777775221 1111222 2578888888877 4776
Q ss_pred cccccccCCCCCCeecCCCCc
Q 048194 508 SIPSSFGNLKRLESLDLSMNN 528 (558)
Q Consensus 508 ~~~~~l~~l~~L~~L~L~~N~ 528 (558)
..-..+..+++|+.|.+.+=.
T Consensus 167 ~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 167 GGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hHHHHHHHhhhhHHHHhcCch
Confidence 667777888888888877643
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=0.034 Score=48.62 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=64.6
Q ss_pred CCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhh-hhhccceEEECCCC-cccc
Q 048194 406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQ-KILNIFTSIDFSTN-NFKG 483 (558)
Q Consensus 406 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n-~l~~ 483 (558)
..++.+|-++..+..+..+.+..+++++.|.+.+|.--+ ...++.. ...++|+.|++++| +||.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d--------------D~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD--------------DWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchh--------------hHHHHHhcccccchheeeccCCCeech
Confidence 448899999999988888888899999999999886321 1112211 23789999999988 4777
Q ss_pred cCchhhcccCCCCeeeCcCCc
Q 048194 484 PILEDVGLLKSLYGLNLSHNA 504 (558)
Q Consensus 484 ~~~~~~~~l~~L~~L~l~~n~ 504 (558)
.....+..+++|+.|.|.+=.
T Consensus 167 ~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 167 GGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hHHHHHHHhhhhHHHHhcCch
Confidence 677788889999999887543
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.31 E-value=0.0086 Score=53.30 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.+++.||++.+.+..... .+.-++.|..|+++.|.+.- +|..++....++.+++..|... ..|.+++..+++++
T Consensus 42 kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 688888888887754333 36667788888888887754 6777888888888888888877 77888888888888
Q ss_pred Eecccccccc
Q 048194 145 LDFSFNQFSG 154 (558)
Q Consensus 145 L~L~~n~~~~ 154 (558)
+++..|.+..
T Consensus 116 ~e~k~~~~~~ 125 (326)
T KOG0473|consen 116 NEQKKTEFFR 125 (326)
T ss_pred hhhccCcchH
Confidence 8888887663
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.04 E-value=0.078 Score=29.07 Aligned_cols=17 Identities=41% Similarity=0.501 Sum_probs=7.3
Q ss_pred CCCCeecCCCCcCcccc
Q 048194 517 KRLESLDLSMNNLSRAI 533 (558)
Q Consensus 517 ~~L~~L~L~~N~l~~~~ 533 (558)
++|++|+|++|++++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 34555555555554433
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.32 E-value=0.0035 Score=64.12 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=23.3
Q ss_pred CCCCEEecCCCCCC-----CCCC-CCCCCCCCEEecCCCccccc
Q 048194 282 PMLELLNLASCKLR-----EIPN-LKNQSQLQYLYLSENQISRE 319 (558)
Q Consensus 282 ~~L~~L~l~~n~l~-----~l~~-~~~~~~L~~L~l~~n~l~~~ 319 (558)
+.++.+++..|.++ .+.. +..++.++++.++.|.+...
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 44566666666665 2222 55666777888887776543
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.68 E-value=0.54 Score=26.21 Aligned_cols=13 Identities=46% Similarity=0.641 Sum_probs=5.8
Q ss_pred CCCeeeCcCCcCc
Q 048194 494 SLYGLNLSHNALT 506 (558)
Q Consensus 494 ~L~~L~l~~n~l~ 506 (558)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.68 E-value=0.54 Score=26.21 Aligned_cols=13 Identities=46% Similarity=0.641 Sum_probs=5.8
Q ss_pred CCCeeeCcCCcCc
Q 048194 494 SLYGLNLSHNALT 506 (558)
Q Consensus 494 ~L~~L~l~~n~l~ 506 (558)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.51 E-value=0.76 Score=25.60 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=15.5
Q ss_pred CCCCCeecCCCCcCcccchhhh
Q 048194 516 LKRLESLDLSMNNLSRAIPSQL 537 (558)
Q Consensus 516 l~~L~~L~L~~N~l~~~~~~~~ 537 (558)
+++|+.|+|++|+++...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678999999999884433333
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.51 E-value=0.76 Score=25.60 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=15.5
Q ss_pred CCCCCeecCCCCcCcccchhhh
Q 048194 516 LKRLESLDLSMNNLSRAIPSQL 537 (558)
Q Consensus 516 l~~L~~L~L~~N~l~~~~~~~~ 537 (558)
+++|+.|+|++|+++...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678999999999884433333
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=84.56 E-value=9.9 Score=38.25 Aligned_cols=155 Identities=19% Similarity=0.020 Sum_probs=84.8
Q ss_pred ccCCCCC--CCCCCC--ccceEeC-------CCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchh
Q 048194 43 KLMQWRQ--STDCCD--WSGVDCD-------EAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSK 111 (558)
Q Consensus 43 ~~~~w~~--~~~~c~--~~~~~c~-------~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 111 (558)
..+.|-. +.+.|+ |+-.+-. ...+++.++++.+.+...++....-..++ +.++.+..++..+...
T Consensus 132 ~~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l 207 (553)
T KOG4242|consen 132 SPSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKL 207 (553)
T ss_pred cccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHh
Confidence 3566755 456676 5432221 22678889999888876665411111222 5555555544311110
Q ss_pred h--cCCCCCCEEeCcCCcCccCCChhccC---CCCCcEEecccccccccc--cchhhcCCCCccEEEccCCccCc----c
Q 048194 112 L--ANISSLTYLNLSDAGFAGQIPVQISR---MARLVALDFSFNQFSGSI--SSIRWEHLLNLVCAVLSDNSLDG----S 180 (558)
Q Consensus 112 ~--~~l~~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~----~ 180 (558)
. ..=..+.+++++.|...+.+|..+.. -.-++.++.+...+.-.. ..+..+.-+.++..+++.|.... +
T Consensus 208 ~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~E 287 (553)
T KOG4242|consen 208 LIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEE 287 (553)
T ss_pred hhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccc
Confidence 0 11135788999999888778765432 245777777776554222 33345556677777777765431 1
Q ss_pred CCcc----ccCCCCCCEEeCccccCC
Q 048194 181 IPRS----MFEFPMLQQLQLANNQFG 202 (558)
Q Consensus 181 ~~~~----l~~l~~L~~L~l~~n~~~ 202 (558)
++.. +..-+++ +|++..++.-
T Consensus 288 gg~~~k~~fS~~~sg-hln~~~~~~p 312 (553)
T KOG4242|consen 288 GGGAEKDTFSPDPSG-HLNSRPRYTP 312 (553)
T ss_pred cccccccccCcCccc-ccccccccCc
Confidence 2222 2233556 7777666543
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=78.09 E-value=8 Score=38.86 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=11.2
Q ss_pred CCCEEeCccccCCCCCCcc
Q 048194 190 MLQQLQLANNQFGGSIPRF 208 (558)
Q Consensus 190 ~L~~L~l~~n~~~~~~~~~ 208 (558)
.+.+++++.|...+.+|..
T Consensus 215 ~lteldls~n~~Kddip~~ 233 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRT 233 (553)
T ss_pred cccccccccCCCCccchhH
Confidence 4566666666666555543
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.98 E-value=1.8 Score=24.20 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=12.9
Q ss_pred CCCCEEecCCCCCCCCCC
Q 048194 282 PMLELLNLASCKLREIPN 299 (558)
Q Consensus 282 ~~L~~L~l~~n~l~~l~~ 299 (558)
+.|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456777777777777776
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.03 E-value=2.4 Score=24.15 Aligned_cols=15 Identities=47% Similarity=0.561 Sum_probs=8.9
Q ss_pred CCCCeecCCCCcCcc
Q 048194 517 KRLESLDLSMNNLSR 531 (558)
Q Consensus 517 ~~L~~L~L~~N~l~~ 531 (558)
++|+.|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666653
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.84 E-value=3.6 Score=23.05 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=7.6
Q ss_pred CCCCEEeCcCCcCe
Q 048194 541 YFLSYLNLSYNQLE 554 (558)
Q Consensus 541 ~~L~~L~l~~n~l~ 554 (558)
++|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555553
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.43 E-value=3.1 Score=42.55 Aligned_cols=63 Identities=22% Similarity=0.167 Sum_probs=27.7
Q ss_pred CCCCCEEecCCCCCCCCCC----CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCcccc
Q 048194 281 SPMLELLNLASCKLREIPN----LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343 (558)
Q Consensus 281 ~~~L~~L~l~~n~l~~l~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~ 343 (558)
.+.+..+.+++|++..+.. ....|+|+.|+|++|..--....++.......|++|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 3444555555555443333 23345555555555521111222333333333555555555553
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.17 E-value=4.9 Score=41.18 Aligned_cols=66 Identities=27% Similarity=0.218 Sum_probs=42.7
Q ss_pred hhhccceEEECCCCcccccCc-hhh-cccCCCCeeeCcCCcCcccccccccCC--CCCCeecCCCCcCcc
Q 048194 466 KILNIFTSIDFSTNNFKGPIL-EDV-GLLKSLYGLNLSHNALTGSIPSSFGNL--KRLESLDLSMNNLSR 531 (558)
Q Consensus 466 ~~~~~L~~L~Ls~n~l~~~~~-~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~N~l~~ 531 (558)
.+.+.+..+.|++|++..... .++ ...|+|..|+|++|...-....++..+ ..|++|-+.+|++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 457888899999998765321 122 346889999999993221122233333 457889999998863
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.91 E-value=30 Score=19.02 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=6.5
Q ss_pred CCCCEEECCCCc
Q 048194 430 KMLEVLNLGNNQ 441 (558)
Q Consensus 430 ~~L~~L~l~~n~ 441 (558)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.52 E-value=63 Score=40.55 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=7.1
Q ss_pred hccceEEECCCCcc
Q 048194 468 LNIFTSIDFSTNNF 481 (558)
Q Consensus 468 ~~~L~~L~Ls~n~l 481 (558)
+++|+.|+|++|.+
T Consensus 18 L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 18 LCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCceEEEeeCCcc
Confidence 44555555555544
Done!