Query 048194
Match_columns 558
No_of_seqs 397 out of 3939
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 12:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-65 3.9E-70 562.5 38.0 532 13-558 3-721 (768)
2 4eco_A Uncharacterized protein 100.0 1.5E-53 5.1E-58 456.1 29.8 471 17-531 25-601 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 1.9E-52 6.6E-57 454.5 33.1 487 15-554 262-864 (876)
4 3rgz_A Protein brassinosteroid 100.0 9.4E-52 3.2E-56 452.3 30.2 448 66-552 201-738 (768)
5 3t6q_A CD180 antigen; protein- 100.0 1.4E-49 4.7E-54 425.7 41.5 452 65-556 33-562 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2E-49 7E-54 424.3 32.5 450 65-556 32-560 (606)
7 3t6q_A CD180 antigen; protein- 100.0 5.1E-48 1.7E-52 413.5 37.0 432 65-534 57-564 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-46 3.9E-51 408.4 44.9 479 65-556 25-624 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 4.8E-48 1.7E-52 410.8 30.1 437 65-558 28-535 (570)
10 3vq2_A TLR4, TOLL-like recepto 100.0 7E-47 2.4E-51 404.7 32.9 429 65-534 56-562 (606)
11 2z81_A CD282 antigen, TOLL-lik 100.0 9E-47 3.1E-51 399.1 26.6 432 65-557 26-513 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-46 1.6E-50 411.4 32.3 472 54-555 14-561 (844)
13 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-44 4.8E-49 392.0 41.9 434 65-534 49-626 (680)
14 3j0a_A TOLL-like receptor 5; m 100.0 8.2E-45 2.8E-49 401.5 29.0 430 65-533 48-563 (844)
15 4eco_A Uncharacterized protein 100.0 2.9E-45 9.9E-50 392.0 23.3 409 91-555 81-601 (636)
16 2z63_A TOLL-like receptor 4, v 100.0 2.5E-44 8.5E-49 382.3 27.1 416 91-557 28-510 (570)
17 2z7x_B TOLL-like receptor 1, v 100.0 3.5E-44 1.2E-48 376.5 27.4 426 68-556 3-483 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 4.9E-44 1.7E-48 388.6 27.8 411 91-555 323-841 (876)
19 3v47_A TOLL-like receptor 5B a 100.0 4.2E-41 1.4E-45 347.1 33.5 363 91-557 30-411 (455)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-42 5.5E-47 366.8 23.3 430 67-557 33-513 (562)
21 4g8a_A TOLL-like receptor 4; l 100.0 7.7E-41 2.6E-45 360.1 36.2 455 65-555 52-581 (635)
22 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-42 1.7E-46 362.7 26.1 436 53-558 3-490 (549)
23 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-41 8.8E-46 354.7 26.9 400 94-558 3-460 (520)
24 1jl5_A Outer protein YOPM; leu 100.0 3.4E-40 1.2E-44 337.6 27.2 392 65-558 11-433 (454)
25 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-39 6.2E-44 349.4 32.9 416 91-558 52-559 (635)
26 3v47_A TOLL-like receptor 5B a 100.0 1.2E-39 4E-44 336.3 28.6 371 65-534 30-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.6E-39 5.5E-44 332.7 26.7 378 88-558 8-415 (454)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.3E-39 2.2E-43 339.3 26.1 430 65-534 52-514 (562)
29 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-39 8.6E-44 315.7 20.3 290 18-341 2-302 (313)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-37 4.4E-42 318.8 29.2 355 86-558 37-391 (457)
31 1o6v_A Internalin A; bacterial 100.0 8.6E-37 2.9E-41 315.2 31.4 347 88-531 43-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 2.9E-36 9.8E-41 311.3 32.4 366 65-530 46-418 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-36 1.2E-40 308.2 29.8 365 65-526 42-408 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 1.7E-34 5.9E-39 291.2 26.1 261 43-345 2-263 (390)
35 2id5_A Lingo-1, leucine rich r 100.0 3E-34 1E-38 297.5 28.1 301 141-532 33-335 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 4.1E-34 1.4E-38 296.5 26.8 331 91-514 32-364 (477)
37 3oja_B Anopheles plasmodium-re 100.0 3.5E-34 1.2E-38 304.6 24.8 325 43-444 8-338 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 1.6E-33 5.6E-38 284.1 27.4 313 115-534 44-356 (390)
39 4fmz_A Internalin; leucine ric 100.0 6.8E-33 2.3E-37 275.1 28.2 307 136-554 40-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 1.7E-32 5.7E-37 272.3 28.6 308 111-530 39-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 8.1E-33 2.8E-37 294.1 27.5 313 115-534 50-362 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 2.4E-35 8.2E-40 304.7 -4.4 213 92-318 4-241 (461)
43 1xku_A Decorin; proteoglycan, 100.0 2.3E-29 7.8E-34 247.7 30.2 176 117-322 32-210 (330)
44 1xku_A Decorin; proteoglycan, 100.0 2.1E-29 7.3E-34 247.9 29.8 287 189-552 31-330 (330)
45 4fcg_A Uncharacterized protein 100.0 1.8E-31 6.1E-36 261.7 14.2 280 17-345 22-316 (328)
46 2ft3_A Biglycan; proteoglycan, 100.0 1E-29 3.4E-34 250.4 26.6 264 233-552 55-331 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 3E-33 1E-37 288.9 -1.1 384 116-555 3-441 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 2.9E-29 9.9E-34 247.1 25.4 286 141-528 34-331 (332)
49 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-30 6.4E-35 252.9 15.4 247 91-363 50-302 (313)
50 3ogk_B Coronatine-insensitive 100.0 2.2E-31 7.4E-36 283.9 -4.5 403 86-532 68-528 (592)
51 2z66_A Variable lymphocyte rec 100.0 5E-27 1.7E-31 228.4 22.1 224 282-531 28-262 (306)
52 2z80_A TOLL-like receptor 2, v 99.9 5.8E-28 2E-32 239.9 13.1 136 46-199 22-159 (353)
53 2z80_A TOLL-like receptor 2, v 99.9 2.3E-27 7.8E-32 235.6 16.7 256 65-366 52-315 (353)
54 3g06_A SSPH2 (leucine-rich rep 99.9 6.9E-26 2.3E-30 238.6 28.6 261 232-557 40-300 (622)
55 4fcg_A Uncharacterized protein 99.9 5.1E-27 1.7E-31 230.0 18.0 234 256-554 80-314 (328)
56 2z66_A Variable lymphocyte rec 99.9 8.7E-27 3E-31 226.7 18.8 240 54-317 7-261 (306)
57 3g06_A SSPH2 (leucine-rich rep 99.9 8.7E-26 3E-30 237.8 27.7 134 232-386 81-214 (622)
58 3o53_A Protein LRIM1, AGAP0063 99.9 3E-28 1E-32 238.0 6.4 259 233-550 11-271 (317)
59 3ogk_B Coronatine-insensitive 99.9 8.1E-30 2.8E-34 271.8 -6.2 418 65-527 73-548 (592)
60 3zyi_A Leucine-rich repeat-con 99.9 2.1E-25 7.1E-30 229.1 26.6 200 94-344 57-256 (452)
61 1wwl_A Monocyte differentiatio 99.9 3.1E-28 1.1E-32 237.3 4.9 247 44-317 21-287 (312)
62 3zyj_A Leucine-rich repeat-con 99.9 2.4E-25 8.2E-30 227.8 26.5 201 93-344 45-245 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 1.4E-25 4.9E-30 230.3 24.2 226 65-317 75-303 (452)
64 3zyj_A Leucine-rich repeat-con 99.9 2.4E-25 8.4E-30 227.7 24.6 224 66-316 65-291 (440)
65 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-25 4.9E-30 215.7 20.6 249 231-551 31-284 (285)
66 1ozn_A Reticulon 4 receptor; N 99.9 4E-25 1.4E-29 212.6 23.1 221 260-531 14-239 (285)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-27 5.6E-32 232.7 5.4 248 88-447 31-280 (317)
68 2p1m_B Transport inhibitor res 99.9 3.1E-28 1E-32 259.7 -3.1 443 52-554 33-519 (594)
69 1wwl_A Monocyte differentiatio 99.9 3.4E-27 1.2E-31 230.0 4.0 251 86-366 38-310 (312)
70 2o6q_A Variable lymphocyte rec 99.9 1.2E-24 4.1E-29 207.3 21.3 217 51-319 2-220 (270)
71 3oja_A Leucine-rich immune mol 99.9 6.2E-26 2.1E-30 234.3 12.2 235 257-549 34-270 (487)
72 3oja_A Leucine-rich immune mol 99.9 3.7E-25 1.3E-29 228.5 13.5 235 117-438 35-270 (487)
73 2p1m_B Transport inhibitor res 99.9 3.1E-28 1.1E-32 259.7 -10.1 417 65-527 66-541 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 2.6E-23 9E-28 198.8 20.6 117 401-533 119-240 (276)
75 1p9a_G Platelet glycoprotein I 99.9 1.7E-22 5.9E-27 194.0 21.7 202 278-530 6-208 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 1.8E-22 6.3E-27 192.9 21.8 207 91-321 28-241 (276)
77 3rfs_A Internalin B, repeat mo 99.9 1.1E-23 3.9E-28 200.7 12.2 225 259-542 21-247 (272)
78 2o6q_A Variable lymphocyte rec 99.9 5.9E-22 2E-26 188.6 23.6 201 118-345 18-220 (270)
79 1p9a_G Platelet glycoprotein I 99.9 4.6E-22 1.6E-26 191.0 22.4 203 86-317 5-208 (290)
80 3m19_A Variable lymphocyte rec 99.9 1.5E-21 5E-26 183.8 19.9 179 354-556 16-194 (251)
81 3rfs_A Internalin B, repeat mo 99.9 1.4E-21 4.9E-26 186.1 19.0 220 283-558 20-239 (272)
82 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.3E-26 184.2 17.6 192 51-271 2-193 (251)
83 4glp_A Monocyte differentiatio 99.9 2E-21 6.7E-26 189.0 16.4 226 305-556 65-309 (310)
84 2ast_B S-phase kinase-associat 99.9 2.2E-23 7.6E-28 205.5 1.8 263 50-347 33-310 (336)
85 3goz_A Leucine-rich repeat-con 99.9 6.7E-23 2.3E-27 203.9 4.9 267 236-534 2-301 (362)
86 1h6u_A Internalin H; cell adhe 99.9 5.2E-21 1.8E-25 185.5 17.4 107 402-531 125-231 (308)
87 1h6u_A Internalin H; cell adhe 99.9 5.4E-21 1.8E-25 185.4 17.2 194 87-317 37-230 (308)
88 4glp_A Monocyte differentiatio 99.9 1.3E-21 4.4E-26 190.3 12.8 208 164-444 90-308 (310)
89 2xwt_C Thyrotropin receptor; s 99.9 4.3E-21 1.5E-25 179.2 15.7 196 92-314 32-236 (239)
90 3goz_A Leucine-rich repeat-con 99.9 1.9E-22 6.4E-27 200.7 4.8 108 96-205 3-125 (362)
91 2ca6_A RAN GTPase-activating p 99.9 3E-22 1E-26 201.3 6.2 116 403-533 184-319 (386)
92 2xwt_C Thyrotropin receptor; s 99.8 1.2E-20 4.2E-25 176.1 15.6 197 65-292 31-236 (239)
93 2ast_B S-phase kinase-associat 99.8 3.1E-22 1.1E-26 197.3 4.8 101 232-340 47-152 (336)
94 2ca6_A RAN GTPase-activating p 99.8 8.7E-22 3E-26 197.9 3.0 241 86-346 27-319 (386)
95 2o6s_A Variable lymphocyte rec 99.8 8.7E-20 3E-24 166.4 14.2 176 333-540 10-188 (208)
96 3cvr_A Invasion plasmid antige 99.8 2.1E-19 7.3E-24 186.8 18.2 189 305-542 60-255 (571)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 4.2E-19 1.4E-23 163.0 16.5 133 408-555 34-167 (220)
98 4ay9_X Follicle-stimulating ho 99.8 2.6E-19 8.9E-24 177.0 16.2 98 54-153 9-117 (350)
99 4ay9_X Follicle-stimulating ho 99.8 2.9E-19 1E-23 176.7 15.7 237 95-362 13-256 (350)
100 2v9t_B SLIT homolog 2 protein 99.8 5.8E-19 2E-23 162.1 16.3 151 355-529 14-164 (220)
101 2o6s_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 164.2 12.9 182 54-281 7-188 (208)
102 3cvr_A Invasion plasmid antige 99.8 5.1E-19 1.7E-23 184.0 17.3 195 283-518 60-255 (571)
103 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6.1E-23 160.0 16.5 153 354-531 21-173 (229)
104 2xot_A Amphoterin-induced prot 99.8 1.3E-18 4.4E-23 172.8 15.6 176 355-554 21-202 (361)
105 3e6j_A Variable lymphocyte rec 99.8 3.2E-18 1.1E-22 158.2 17.1 168 43-248 8-175 (229)
106 1h6t_A Internalin B; cell adhe 99.8 3.9E-18 1.3E-22 163.7 16.5 107 402-531 108-214 (291)
107 1h6t_A Internalin B; cell adhe 99.8 2.9E-18 9.9E-23 164.7 14.4 170 114-317 44-213 (291)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 5.1E-18 1.7E-22 155.8 14.9 156 355-533 14-169 (220)
109 2v9t_B SLIT homolog 2 protein 99.8 1.4E-17 4.9E-22 152.8 16.1 153 376-555 14-166 (220)
110 4ezg_A Putative uncharacterize 99.8 7.5E-18 2.6E-22 152.0 13.7 137 397-555 58-195 (197)
111 1m9s_A Internalin B; cell inva 99.7 9.9E-18 3.4E-22 176.3 15.3 169 281-506 42-210 (605)
112 1m9s_A Internalin B; cell inva 99.7 7.8E-18 2.7E-22 177.1 13.5 190 284-532 23-212 (605)
113 4b8c_D Glucose-repressible alc 99.7 7.5E-19 2.5E-23 189.6 3.1 259 19-317 129-404 (727)
114 4ezg_A Putative uncharacterize 99.7 2E-17 6.9E-22 149.2 11.9 153 88-269 41-193 (197)
115 1xeu_A Internalin C; cellular 99.7 8.7E-18 3E-22 158.7 9.8 106 402-531 81-186 (263)
116 2xot_A Amphoterin-induced prot 99.7 1E-16 3.5E-21 159.0 15.8 154 375-555 20-177 (361)
117 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.6E-24 189.4 -6.6 121 408-548 443-567 (567)
118 1w8a_A SLIT protein; signaling 99.7 1E-16 3.6E-21 143.7 12.9 133 375-534 10-143 (192)
119 1xeu_A Internalin C; cellular 99.7 8.4E-17 2.9E-21 152.0 9.5 102 90-202 18-119 (263)
120 2ell_A Acidic leucine-rich nuc 99.7 2.8E-16 9.5E-21 137.8 11.6 133 406-555 24-161 (168)
121 1w8a_A SLIT protein; signaling 99.7 6.1E-16 2.1E-20 138.7 13.8 158 355-539 11-171 (192)
122 2je0_A Acidic leucine-rich nuc 99.7 3.7E-16 1.3E-20 134.0 10.7 128 406-550 17-149 (149)
123 4b8c_D Glucose-repressible alc 99.7 5.7E-17 1.9E-21 174.9 6.3 143 397-558 215-358 (727)
124 1dce_A Protein (RAB geranylger 99.6 2.7E-18 9.3E-23 179.5 -6.2 202 88-337 346-567 (567)
125 2o6r_A Variable lymphocyte rec 99.6 2.7E-15 9.4E-20 132.6 13.3 134 374-534 8-141 (177)
126 2wfh_A SLIT homolog 2 protein 99.6 3.1E-15 1.1E-19 134.0 13.7 129 375-531 12-140 (193)
127 3sb4_A Hypothetical leucine ri 99.6 7.4E-16 2.5E-20 150.9 9.7 103 429-548 225-328 (329)
128 2ell_A Acidic leucine-rich nuc 99.6 1.6E-15 5.5E-20 132.9 9.6 138 372-535 23-164 (168)
129 2wfh_A SLIT homolog 2 protein 99.6 9.6E-15 3.3E-19 130.8 14.4 128 355-507 13-140 (193)
130 2o6r_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 127.8 14.5 130 355-508 10-139 (177)
131 2je0_A Acidic leucine-rich nuc 99.6 3.7E-15 1.2E-19 127.8 9.4 129 373-526 17-149 (149)
132 1a9n_A U2A', U2A'; complex (nu 99.6 5.2E-15 1.8E-19 130.6 9.1 134 402-555 15-154 (176)
133 3sb4_A Hypothetical leucine ri 99.5 7.5E-14 2.6E-18 136.5 11.6 102 230-337 224-328 (329)
134 1a9n_A U2A', U2A'; complex (nu 99.5 3.1E-14 1.1E-18 125.6 6.8 105 407-530 43-153 (176)
135 4fs7_A Uncharacterized protein 99.5 3.3E-12 1.1E-16 128.1 22.1 235 250-546 155-393 (394)
136 1ds9_A Outer arm dynein; leuci 99.5 5.2E-16 1.8E-20 140.0 -5.3 137 397-555 39-186 (198)
137 3g39_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 119.3 11.3 108 407-532 10-117 (170)
138 4fdw_A Leucine rich hypothetic 99.5 2E-12 6.7E-17 129.3 19.5 250 247-552 126-381 (401)
139 4fs7_A Uncharacterized protein 99.4 7.6E-12 2.6E-16 125.5 22.0 217 278-551 158-376 (394)
140 4fdw_A Leucine rich hypothetic 99.4 7.2E-12 2.5E-16 125.2 21.1 238 90-365 112-358 (401)
141 2r9u_A Variable lymphocyte rec 99.4 5.7E-13 2E-17 116.9 11.4 106 408-531 14-119 (174)
142 3g39_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 113.8 12.0 108 374-508 10-117 (170)
143 1ds9_A Outer arm dynein; leuci 99.4 3.6E-15 1.2E-19 134.5 -5.4 131 406-556 18-155 (198)
144 2r9u_A Variable lymphocyte rec 99.4 3E-12 1E-16 112.4 11.5 107 374-507 13-119 (174)
145 3un9_A NLR family member X1; l 99.3 2.8E-13 9.4E-18 134.1 -0.6 38 406-443 155-196 (372)
146 3un9_A NLR family member X1; l 99.3 1.8E-13 6.1E-18 135.4 -2.4 186 351-555 71-284 (372)
147 4gt6_A Cell surface protein; l 99.2 3.5E-09 1.2E-13 106.0 25.0 132 400-553 259-390 (394)
148 2ifg_A High affinity nerve gro 99.2 9E-11 3.1E-15 115.6 10.5 105 409-531 11-117 (347)
149 4gt6_A Cell surface protein; l 99.1 1.8E-08 6.3E-13 100.7 26.2 109 400-529 282-390 (394)
150 2ifg_A High affinity nerve gro 99.1 1.9E-10 6.4E-15 113.3 10.5 106 375-507 10-117 (347)
151 4h09_A Hypothetical leucine ri 98.8 9.5E-07 3.2E-11 87.7 23.8 282 229-541 43-356 (379)
152 2ra8_A Uncharacterized protein 98.8 7.1E-09 2.4E-13 101.5 7.0 104 65-173 107-227 (362)
153 2ra8_A Uncharacterized protein 98.7 5.9E-09 2E-13 102.1 5.2 137 405-552 192-341 (362)
154 4h09_A Hypothetical leucine ri 98.7 3E-06 1E-10 84.1 24.9 102 400-519 257-358 (379)
155 1io0_A Tropomodulin; LRR prote 98.7 4.9E-09 1.7E-13 92.7 3.0 86 469-554 65-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 1.6E-08 5.5E-13 89.3 3.4 120 401-531 31-165 (185)
157 3rw6_A Nuclear RNA export fact 98.5 4.7E-08 1.6E-12 90.7 2.4 80 466-547 167-257 (267)
158 3e4g_A ATP synthase subunit S, 98.4 8.2E-08 2.8E-12 82.5 1.9 84 430-528 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 5E-07 1.7E-11 83.8 6.1 80 427-523 167-257 (267)
160 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5E-11 74.7 4.5 94 398-506 53-153 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 6.2E-05 2.1E-09 65.9 3.7 40 405-444 40-84 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 6.4E-05 2.2E-09 65.8 3.7 121 423-554 34-170 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.003 1E-07 51.4 6.6 39 468-506 30-68 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.003 1E-07 51.4 6.3 57 472-530 11-68 (130)
165 2lz0_A Uncharacterized protein 48.6 19 0.00064 27.0 4.0 44 482-526 9-52 (100)
166 2lz0_A Uncharacterized protein 40.7 55 0.0019 24.4 5.5 45 128-174 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-65 Score=562.45 Aligned_cols=532 Identities=29% Similarity=0.420 Sum_probs=352.3
Q ss_pred HhhcCCCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCCCccceEeCCCCCEEEEEcCCCCcccc---ccC------
Q 048194 13 AFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG---IEN------ 83 (558)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~---~~~------ 83 (558)
+++++++.++|++||++||+++. ++. .+++|..++|||.|.||.|+ .++|++|+|+++.+.|. +++
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~---~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN---LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT---SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred cCccccCCHHHHHHHHHHHhhCC-Ccc---cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccC
Confidence 34455567889999999999997 343 68999988999999999998 69999999999988775 321
Q ss_pred ---------------cccccCCCCCCEEECCCCCCCCCccch--hhcCCCCCCEEeCcCCcCccCCChhc-cCCCCCcEE
Q 048194 84 ---------------AAILFSLHYLRSLNLARTSFNGTQISS--KLANISSLTYLNLSDAGFAGQIPVQI-SRMARLVAL 145 (558)
Q Consensus 84 ---------------~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L 145 (558)
...+..+++|++|+|++|.+.+. +|. .++++++|++|++++|.+.+..|..+ .++++|++|
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 01577888999999999988776 666 78888888888888887776666544 455555555
Q ss_pred ecccccccccccch------------------------hhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccC
Q 048194 146 DFSFNQFSGSISSI------------------------RWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQF 201 (558)
Q Consensus 146 ~L~~n~~~~~~~~~------------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 201 (558)
++++|.+++..+.. .+..+++|++|++++|.+.+.+|. ++++++|++|++++|.+
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence 55555554322110 113344444445555444443333 44444444444444444
Q ss_pred CCCCCccc----------------------------------------------cccccchhhh----------hchhhh
Q 048194 202 GGSIPRFS----------------------------------------------NASSSALDTQ----------IKRVYS 225 (558)
Q Consensus 202 ~~~~~~~~----------------------------------------------~~~~~~l~~l----------i~~~~~ 225 (558)
++.+|..+ ...+..++.+ +|..+
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~- 314 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF- 314 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-
T ss_pred CCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-
Confidence 43333222 1111122211 22223
Q ss_pred cccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCC-CCCEEecCCCCCC-CCCC-CCC
Q 048194 226 CLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSP-MLELLNLASCKLR-EIPN-LKN 302 (558)
Q Consensus 226 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~-~l~~-~~~ 302 (558)
..+++|++|++++|.+.|.+|...+..+++|++|++++|.+.+..+.. +..++ +|+.|++++|+++ .+|. +..
T Consensus 315 ---~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 315 ---GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp ---GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred ---hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 444555555555555555555444555555555555555555444433 22222 4444444444443 2222 222
Q ss_pred --CCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCCC---CCCC
Q 048194 303 --QSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQL---PNNP 375 (558)
Q Consensus 303 --~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~---~~~l 375 (558)
+++|++|++++|.+++.+|..+..+.. |++|++++|.+++..+. ..+++|+.|++++|.+.+.+|.. ..+|
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSE--LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTT--CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cccCCccEEECCCCccccccCHHHhcCCC--CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 455666666666666666666655554 66666666666654433 22566666666666666555543 3456
Q ss_pred cEEEccCCcccccCCCC---------------CccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCC
Q 048194 376 IYIDFSNNNFTSSIPAD---------------TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNN 440 (558)
Q Consensus 376 ~~l~l~~n~~~~~~~~~---------------~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 440 (558)
++|++++|.+++.+|.. .+.+.+|.+++.+++|++|++++|++.+.+|..+..+++|+.|++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 66666666666554432 334677888888888999999999988888888888999999999999
Q ss_pred cCcccCCccccCcee-------------------------------------------------------eccccchhhh
Q 048194 441 QFSDKFPCSLYDAPI-------------------------------------------------------TIKGLDIKLQ 465 (558)
Q Consensus 441 ~i~~~~p~~~~~~~~-------------------------------------------------------~~~~~~~~~~ 465 (558)
+++|.+|..++.... ...+.....+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 998888876643100 0000001123
Q ss_pred hhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCE
Q 048194 466 KILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSY 545 (558)
Q Consensus 466 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 545 (558)
..+++|+.||+++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|++++.+|..+..+++|++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCcCeeecC
Q 048194 546 LNLSYNQLEGRFQ 558 (558)
Q Consensus 546 L~l~~n~l~~~~~ 558 (558)
|++++|+++|+||
T Consensus 709 L~ls~N~l~g~iP 721 (768)
T 3rgz_A 709 IDLSNNNLSGPIP 721 (768)
T ss_dssp EECCSSEEEEECC
T ss_pred EECcCCcccccCC
Confidence 9999999999998
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-53 Score=456.13 Aligned_cols=471 Identities=19% Similarity=0.245 Sum_probs=372.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCC-----CcccCCCCCCCCCCCc---cceEeCCCCCEEEEEcCCCCccccccCccccc
Q 048194 17 GQCQSDQQTLLLQLKSSLTFDPSS-----SVKLMQWRQSTDCCDW---SGVDCDEAGHVIGLDLSTESISGGIENAAILF 88 (558)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~w~~~~~~c~~---~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~ 88 (558)
++....|++||.++++++.++.|. ++...+|+.+.++|.| .||.|+..++|++|+|+++++.|.+|+ .++
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~--~l~ 102 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD--AIG 102 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG--GGG
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh--HHh
Confidence 334557999999999998776553 1234589999999999 999998779999999999999999998 899
Q ss_pred CCCCCCEEECCCCCCC------C------C--------------------ccchhhc-------------------CCCC
Q 048194 89 SLHYLRSLNLARTSFN------G------T--------------------QISSKLA-------------------NISS 117 (558)
Q Consensus 89 ~l~~L~~L~L~~n~~~------~------~--------------------~~~~~~~-------------------~l~~ 117 (558)
.+++|++|+|++|.+. + . ..+..+. ....
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 182 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence 9999999999999651 1 0 0111111 1112
Q ss_pred CCEEeCc--CCcCccCCChhccCCCCCcEEeccccccccc-----------------ccchhhc--CCCCccEEEccCCc
Q 048194 118 LTYLNLS--DAGFAGQIPVQISRMARLVALDFSFNQFSGS-----------------ISSIRWE--HLLNLVCAVLSDNS 176 (558)
Q Consensus 118 L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~-----------------~~~~~~~--~l~~L~~L~L~~n~ 176 (558)
++.+.+. +|.+++ +|..++++++|++|++++|.+++. +|. .++ ++++|++|++++|.
T Consensus 183 l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCT
T ss_pred hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCc
Confidence 3333332 578887 899999999999999999999974 655 466 99999999999999
Q ss_pred cCccCCccccCCCCCCEEeCcccc-CCC-CCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccCh-hhh
Q 048194 177 LDGSIPRSMFEFPMLQQLQLANNQ-FGG-SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQL-DKI 253 (558)
Q Consensus 177 l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~ 253 (558)
+.+.+|..++++++|++|++++|+ +++ .+|..+..-. ....+++|++|++++|.++ .+|. ..+
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA-------------DAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH-------------HSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhh-------------ccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 999999999999999999999998 887 6776541000 0023489999999999998 7774 378
Q ss_pred cCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCC-CCEEecCCCcccccCChhHHhhcccc
Q 048194 254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQ-LQYLYLSENQISREIPNWIWRVSVVG 331 (558)
Q Consensus 254 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~ 331 (558)
..+++|++|++++|.+.+..+ . +..+++|+.|++++|+++.+|. +..+++ |++|++++|+++ .+|..+.....++
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred ccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 999999999999999997777 4 8889999999999999999988 888998 999999999997 7888776666456
Q ss_pred ceEEEcCCccccccCCC--C-------CCCccCEEEcccccCcccCCC----CCCCCcEEEccCCcccccCCCCCccCCC
Q 048194 332 LHCLNLSHNFLVGFQAP--Y-------SIPALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFTSSIPADTVNGTL 398 (558)
Q Consensus 332 L~~L~ls~n~l~~~~~~--~-------~~~~L~~L~l~~n~~~~~~~~----~~~~l~~l~l~~n~~~~~~~~~~~~~~~ 398 (558)
|++|++++|.+.+..+. . .+++|+.|++++|++++ +|. .+++|++|++++|.++ .+|...+.+..
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~ 481 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN 481 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence 99999999999876443 2 46789999999999984 443 2578999999999988 33332221111
Q ss_pred CCCCCCCCCCCEEECcCCcCCccCCcccc--cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194 399 PDTFPRNCLLQTLDLNGNRPQGTVPKSIA--KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF 476 (558)
Q Consensus 399 p~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 476 (558)
..+..+++|+.|++++|.++ .+|..+. .+++|+.|++++|.+++ +|..+.. +++|++|++
T Consensus 482 -~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~---------------l~~L~~L~L 543 (636)
T 4eco_A 482 -ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN---------------SSTLKGFGI 543 (636)
T ss_dssp -EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG---------------CSSCCEEEC
T ss_pred -ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc---------------CCCCCEEEC
Confidence 11223348999999999998 7787776 89999999999999987 7776654 889999999
Q ss_pred ------CCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194 477 ------STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 477 ------s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
++|++.+.+|..++.+++|++|++++|+++ .+|..+. ++|+.|++++|++..
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 457788888899999999999999999994 7887765 799999999997764
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-52 Score=454.47 Aligned_cols=487 Identities=19% Similarity=0.224 Sum_probs=388.9
Q ss_pred hcCCCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCC-----CCC--CCc------------cceEeCCCCCEEEEEcCCC
Q 048194 15 VSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQS-----TDC--CDW------------SGVDCDEAGHVIGLDLSTE 75 (558)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~-----~~~--c~~------------~~~~c~~~~~v~~L~l~~~ 75 (558)
.++++..+|++||++||+++.++ +|+.+ .++ |.| .||.|+..++|++|+|+++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~--------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~ 333 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK--------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG--------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTT
T ss_pred cccccchHHHHHHHHHHHHcCCC--------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccC
Confidence 34455678999999999999654 35332 355 999 9999987799999999999
Q ss_pred CccccccCcccccCCCCCCEEEC-CCCCCCCCccchh----------------------------------------h--
Q 048194 76 SISGGIENAAILFSLHYLRSLNL-ARTSFNGTQISSK----------------------------------------L-- 112 (558)
Q Consensus 76 ~~~~~~~~~~~~~~l~~L~~L~L-~~n~~~~~~~~~~----------------------------------------~-- 112 (558)
++.|.+|+ .++.+++|++|+| ++|.+.+. .+-. +
T Consensus 334 ~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 334 GAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp CCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred CCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 99999998 8999999999999 77765443 1100 0
Q ss_pred ---------cCCCCCCEEeCcC--CcCccCCChhccCCCCCcEEecccccccc-----------------cccchhhc--
Q 048194 113 ---------ANISSLTYLNLSD--AGFAGQIPVQISRMARLVALDFSFNQFSG-----------------SISSIRWE-- 162 (558)
Q Consensus 113 ---------~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~~~~-----------------~~~~~~~~-- 162 (558)
.....++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+|. .++
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~ 488 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWS 488 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGG
T ss_pred CccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhc
Confidence 1122344444443 78886 89999999999999999999997 2655 445
Q ss_pred CCCCccEEEccCCccCccCCccccCCCCCCEEeCcccc-CCC-CCCccccccccchhhhhchhhhcccCCCCCCCEEEcc
Q 048194 163 HLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ-FGG-SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLS 240 (558)
Q Consensus 163 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~ 240 (558)
++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+.. +......+++|++|+++
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~------------L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR------------LADDEDTGPKIQIFYMG 556 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH------------HHHCTTTTTTCCEEECC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh------------hhhcccccCCccEEEee
Confidence 99999999999999999999999999999999999998 887 67765410 00011556799999999
Q ss_pred cccCCcccCh-hhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCC-CCEEecCCCccc
Q 048194 241 SNNLNGTVQL-DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQ-LQYLYLSENQIS 317 (558)
Q Consensus 241 ~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~-L~~L~l~~n~l~ 317 (558)
+|.++ .+|. ..+..+++|++|++++|.+. ..| . +..+++|+.|++++|+++.+|. +..+++ |+.|++++|.+.
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC
Confidence 99998 7774 37899999999999999998 555 3 8999999999999999999998 889998 999999999997
Q ss_pred ccCChhHHhhccccceEEEcCCccccccCCC-------CCCCccCEEEcccccCcccCCC----CCCCCcEEEccCCccc
Q 048194 318 REIPNWIWRVSVVGLHCLNLSHNFLVGFQAP-------YSIPALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFT 386 (558)
Q Consensus 318 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-------~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~l~l~~n~~~ 386 (558)
.+|..+.....++|+.|++++|.+.+..+. ..+++|+.|++++|.+. .+|. .+++|+.|++++|.++
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 788877766666699999999999876543 12568999999999998 4443 3578999999999998
Q ss_pred ccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccc--cCCCCCEEECCCCcCcccCCccccCceeeccccchhh
Q 048194 387 SSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIA--KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL 464 (558)
Q Consensus 387 ~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~ 464 (558)
.+|...+.+..+ .+.++++|+.|++++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..
T Consensus 711 -~ip~~~~~~~~~-~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~------------ 774 (876)
T 4ecn_A 711 -SIPENSLKPKDG-NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN------------ 774 (876)
T ss_dssp -CCCTTSSSCTTS-CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG------------
T ss_pred -ccChHHhccccc-cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc------------
Confidence 444332222111 1234458999999999999 7888887 89999999999999987 6766644
Q ss_pred hhhhccceEEECCC------CcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhc
Q 048194 465 QKILNIFTSIDFST------NNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLA 538 (558)
Q Consensus 465 ~~~~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 538 (558)
+++|+.|+|++ |++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|||++|++....+..+.
T Consensus 775 ---L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 775 ---SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp ---CTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred ---CCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence 89999999976 778888999999999999999999999 58888765 6999999999999876666666
Q ss_pred CCCCCCEEeCcCCcCe
Q 048194 539 SLYFLSYLNLSYNQLE 554 (558)
Q Consensus 539 ~l~~L~~L~l~~n~l~ 554 (558)
....+..+.|.+|+++
T Consensus 849 ~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 849 PYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp HHHHTTCCEEECCTTS
T ss_pred ccccchheeecCCCcc
Confidence 6556666777766554
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.4e-52 Score=452.33 Aligned_cols=448 Identities=29% Similarity=0.375 Sum_probs=245.1
Q ss_pred CEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEE
Q 048194 66 HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL 145 (558)
Q Consensus 66 ~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 145 (558)
++++|++++|.+.+..+. +..+++|++|++++|.+.+. +|..++++++|++|++++|.+++.+|.. .+++|++|
T Consensus 201 ~L~~L~Ls~n~l~~~~~~---l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF---LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TCCEEECCSSCCCSCCCB---CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred cCCEEECcCCcCCCCCcc---cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 344444444444332222 44444444444444444443 4444444444444444444444333322 33444444
Q ss_pred ecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhh------
Q 048194 146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ------ 219 (558)
Q Consensus 146 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l------ 219 (558)
++++|.+++.+|......+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|......+..++.+
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 44444443333321111124444444444444444444444444444444444444433333211122222222
Q ss_pred ----hchhhhcccCCCC-CCCEEEcccccCCcccChhhhcC--CCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCC
Q 048194 220 ----IKRVYSCLGLRTQ-KLTPLLLSSNNLNGTVQLDKILS--LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 292 (558)
Q Consensus 220 ----i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 292 (558)
+|..+ ..++ +|++|++++|.+++.++.. +.. +++|++|++++|.+.+..+.. +..+++|+.|++++|
T Consensus 355 l~~~~p~~l----~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 355 FSGELPESL----TNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFN 428 (768)
T ss_dssp EEECCCTTH----HHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSS
T ss_pred cCccccHHH----HhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCccccccCHH-HhcCCCCCEEECcCC
Confidence 11111 1121 3333333333333222211 111 333444444444444333333 444444455555544
Q ss_pred CCC-CCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccC
Q 048194 293 KLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNI 368 (558)
Q Consensus 293 ~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~ 368 (558)
+++ .+|. +..+++|++|++++|.+.+.+|..+..++. |++|++++|.+++..+. ..+++|++|++++|++++.+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT--LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT--CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC--ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 444 3333 444445555555555544444444444433 55555555555443332 12455555555555555444
Q ss_pred CCC---CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCc---------------------
Q 048194 369 HQL---PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPK--------------------- 424 (558)
Q Consensus 369 ~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~--------------------- 424 (558)
|.. +.+|++|++++|.++ +.+|..++.+++|+.|++++|++.+.+|.
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFS---------GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCE---------EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred ChHHhcCCCCCEEECCCCccc---------CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 432 234555555555554 45666677777777777777777655554
Q ss_pred -------------------------------------------------ccccCCCCCEEECCCCcCcccCCccccCcee
Q 048194 425 -------------------------------------------------SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPI 455 (558)
Q Consensus 425 -------------------------------------------------~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~ 455 (558)
.+..+++|+.|++++|.++|.+|..+..
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~--- 654 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS--- 654 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG---
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc---
Confidence 3444678999999999999999988765
Q ss_pred eccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchh
Q 048194 456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS 535 (558)
Q Consensus 456 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 535 (558)
++.|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+.+++.|+.||+++|+++|.+|.
T Consensus 655 ------------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 655 ------------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp ------------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred ------------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhcCCCCCCEEeCcCCc
Q 048194 536 QLASLYFLSYLNLSYNQ 552 (558)
Q Consensus 536 ~~~~l~~L~~L~l~~n~ 552 (558)
. ..+.++......+|+
T Consensus 723 ~-~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 723 M-GQFETFPPAKFLNNP 738 (768)
T ss_dssp S-SSGGGSCGGGGCSCT
T ss_pred c-hhhccCCHHHhcCCc
Confidence 4 344556666666774
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-49 Score=425.67 Aligned_cols=452 Identities=20% Similarity=0.146 Sum_probs=296.8
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
..+++|++++|.+++..+. .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..|..|+++++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 5799999999999987777 799999999999999999886 7889999999999999999999888999999999999
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhh
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVY 224 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~ 224 (558)
|++++|.+++..+. .++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 110 L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------------- 173 (606)
T 3t6q_A 110 LFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM--------------- 173 (606)
T ss_dssp EECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH---------------
T ss_pred eeccccCcccCCcc-hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh---------------
Confidence 99999999943333 58999999999999999986444455569999999999999986666544
Q ss_pred hcccCCCCCCC--EEEcccccCCcccChhhhc------------------------------------------------
Q 048194 225 SCLGLRTQKLT--PLLLSSNNLNGTVQLDKIL------------------------------------------------ 254 (558)
Q Consensus 225 ~~~~~~~~~L~--~L~l~~n~l~~~~~~~~~~------------------------------------------------ 254 (558)
..+++|+ .|++++|.+.+..+ ..+.
T Consensus 174 ----~~l~~L~~l~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 174 ----SSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp ----HTTTTCCSEEEECTTCCCCEECT-TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred ----hhhcccceeEEecCCCccCccCh-hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 3333333 33444443332111 1110
Q ss_pred -CCC--CCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccc
Q 048194 255 -SLG--NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVV 330 (558)
Q Consensus 255 -~l~--~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 330 (558)
.+. +|++|++++|.+.+..+.. +..+++|+.|++++|+++.+|. +..+++|++|++++|++.+..|..+..++.
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~- 326 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS- 326 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTT-TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-
T ss_pred chhhcCceeEEEeecCccCccCHHH-hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCc-
Confidence 000 3444455555444333322 4455555555555555555554 555555555555555554444444444433
Q ss_pred cceEEEcCCccccccCCC---CCCCccCEEEcccccCcccC--C---CCCCCCcEEEccCCcccccCCCC----------
Q 048194 331 GLHCLNLSHNFLVGFQAP---YSIPALRFIDLISNQLRGNI--H---QLPNNPIYIDFSNNNFTSSIPAD---------- 392 (558)
Q Consensus 331 ~L~~L~ls~n~l~~~~~~---~~~~~L~~L~l~~n~~~~~~--~---~~~~~l~~l~l~~n~~~~~~~~~---------- 392 (558)
|++|++++|.+.+..+. ..+++|++|++++|.+.+.. + ....+|++|++++|.+.+..+..
T Consensus 327 -L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 327 -LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp -CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred -CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 55555555544422221 12445555555555444322 1 12334445555554444210000
Q ss_pred -----CccCCCC-CCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhh
Q 048194 393 -----TVNGTLP-DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466 (558)
Q Consensus 393 -----~~~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~ 466 (558)
.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.... ....+.
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~~~ 473 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ------------KTNSLQ 473 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC------------SSCGGG
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc------------cchhhc
Confidence 0001222 2245555555555555555555555555555555555555555431110 002234
Q ss_pred hhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEE
Q 048194 467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYL 546 (558)
Q Consensus 467 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 546 (558)
.+++|++|++++|.+++..|..|+.+++|++|++++|++++..|..+.+++.| .|++++|++++..|..+..+++|++|
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 58889999999999998888889999999999999999998888899999999 99999999998888888888999999
Q ss_pred eCcCCcCeee
Q 048194 547 NLSYNQLEGR 556 (558)
Q Consensus 547 ~l~~n~l~~~ 556 (558)
++++|++++.
T Consensus 553 ~l~~N~~~c~ 562 (606)
T 3t6q_A 553 NLRQNPLDCT 562 (606)
T ss_dssp ECTTCCEECS
T ss_pred eCCCCCcccc
Confidence 9999998764
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-49 Score=424.33 Aligned_cols=450 Identities=20% Similarity=0.160 Sum_probs=318.7
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.++++|+++++.+.+..+. .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..|..|+++++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 6899999999999987776 799999999999999999886 6888999999999999999999888999999999999
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCCccccccccchh----hh
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALD----TQ 219 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~----~l 219 (558)
|++++|.+.+..+. .++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+ ..+..++ .+
T Consensus 109 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L 186 (606)
T 3vq2_A 109 LVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSL 186 (606)
T ss_dssp EECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEE
T ss_pred EEccCCcccccccc-ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh-hhhhcccccccee
Confidence 99999999844333 68999999999999999986 579999999999999999999987666544 1111111 11
Q ss_pred ---------hchhhhcccCCCCCCCEEEcccccCCcccChhhh-------------------------------------
Q 048194 220 ---------IKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKI------------------------------------- 253 (558)
Q Consensus 220 ---------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------------------------------------- 253 (558)
++... ....+|++|++++|.+.+......+
T Consensus 187 ~l~~n~l~~~~~~~----~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 187 DMSLNPIDFIQDQA----FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp ECTTCCCCEECTTT----TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred eccCCCcceeCccc----ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 12111 2233677777776655422222222
Q ss_pred -------------------cCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCC
Q 048194 254 -------------------LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSEN 314 (558)
Q Consensus 254 -------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n 314 (558)
..+++|+.|++++|.+.... .+..+++|+.|++++|.++.+|.+ .+++|++|++++|
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESC
T ss_pred HhheeccccccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC-CCCccceeeccCC
Confidence 33344455555555443221 144455555555555555555544 5555555555555
Q ss_pred cccccCChhHHhhccccceEEEcCCccccccC--CC--CCCCccCEEEcccccCcccCC--CCCCCCcEEEccCCccccc
Q 048194 315 QISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ--AP--YSIPALRFIDLISNQLRGNIH--QLPNNPIYIDFSNNNFTSS 388 (558)
Q Consensus 315 ~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~~--~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~l~l~~n~~~~~ 388 (558)
+..+.. .+..++ +|++|++++|.+++.. +. ..+++|+.|++++|.+.+... ....+|+.|++++|.+.+
T Consensus 339 ~~~~~~--~~~~l~--~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~- 413 (606)
T 3vq2_A 339 KGSISF--KKVALP--SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR- 413 (606)
T ss_dssp SSCEEC--CCCCCT--TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES-
T ss_pred cCccch--hhccCC--CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC-
Confidence 433322 122222 3666666666655542 11 235666666666666554221 123466666666666662
Q ss_pred CCCCCccCCCC-CCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCccc-CCccccCceeeccccchhhhh
Q 048194 389 IPADTVNGTLP-DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDK-FPCSLYDAPITIKGLDIKLQK 466 (558)
Q Consensus 389 ~~~~~~~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~p~~~~~~~~~~~~~~~~~~~ 466 (558)
..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .|..+.
T Consensus 414 --------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------- 470 (606)
T 3vq2_A 414 --------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA--------------- 470 (606)
T ss_dssp --------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT---------------
T ss_pred --------ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc---------------
Confidence 233 3566667777777777777766666777777777777777777653 455443
Q ss_pred hhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCC-CCCE
Q 048194 467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLY-FLSY 545 (558)
Q Consensus 467 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~ 545 (558)
.+++|++|++++|.+++..+..++.+++|++|++++|++++..|..+.++++|+.|++++|+++ .+|..+..++ +|++
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 3889999999999999888888999999999999999999888999999999999999999998 6777788886 5999
Q ss_pred EeCcCCcCeee
Q 048194 546 LNLSYNQLEGR 556 (558)
Q Consensus 546 L~l~~n~l~~~ 556 (558)
|++++|++.+.
T Consensus 550 l~l~~N~~~c~ 560 (606)
T 3vq2_A 550 FNLTNNSVACI 560 (606)
T ss_dssp EECCSCCCCCS
T ss_pred EEccCCCcccC
Confidence 99999998764
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.1e-48 Score=413.51 Aligned_cols=432 Identities=22% Similarity=0.204 Sum_probs=340.3
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.++++|++++|.+.+..+. .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..|..++++++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHED--TFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccceEEECCCCccceeChh--hccCccccCeeeCCCCccccc-ChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 7899999999999987777 799999999999999999886 7889999999999999999999766788999999999
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCC--EEeCccccCCCCCCcccccc-cc-------
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQ--QLQLANNQFGGSIPRFSNAS-SS------- 214 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~~~~~~~~~~~~~-~~------- 214 (558)
|++++|.+.+.... .+..+++|++|++++|.+.+..+..+..+++|+ +|++++|.+.+..|..+... +.
T Consensus 134 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 134 LYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp EECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred EECCCCcccccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence 99999999953322 355699999999999999988888899999999 99999999987766554321 00
Q ss_pred ------------------------------------------chhhh----------hchhhhcccCCCCCCCEEEcccc
Q 048194 215 ------------------------------------------ALDTQ----------IKRVYSCLGLRTQKLTPLLLSSN 242 (558)
Q Consensus 215 ------------------------------------------~l~~l----------i~~~~~~~~~~~~~L~~L~l~~n 242 (558)
.++.+ .+..+ ..+++|++|++++|
T Consensus 213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF----HCFSGLQELDLTAT 288 (606)
T ss_dssp SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT----TTCTTCSEEECTTS
T ss_pred hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh----ccccCCCEEeccCC
Confidence 00000 11112 55667777777777
Q ss_pred cCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC--CCCCCCCCEEecCCCccccc
Q 048194 243 NLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN--LKNQSQLQYLYLSENQISRE 319 (558)
Q Consensus 243 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~--~~~~~~L~~L~l~~n~l~~~ 319 (558)
.++ .+| ..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+. .+|. +..+++|++|++++|.+.+.
T Consensus 289 ~l~-~lp-~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 289 HLS-ELP-SGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp CCS-CCC-SSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred ccC-CCC-hhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 766 555 34666777777777777776554444 666777777777777665 5554 66777777777777777654
Q ss_pred C--ChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCC----CCCCCcEEEccCCcccccCCC
Q 048194 320 I--PNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFTSSIPA 391 (558)
Q Consensus 320 ~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~l~l~~n~~~~~~~~ 391 (558)
. +..+..++. |++|++++|.+.+..+. ..+++|+.|++++|++.+..+. .+.+|++|++++|.+.
T Consensus 366 ~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~----- 438 (606)
T 3t6q_A 366 DCCNLQLRNLSH--LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD----- 438 (606)
T ss_dssp EESTTTTTTCTT--CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB-----
T ss_pred cCcchhcccCCC--CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC-----
Confidence 4 455555554 77777777777766543 2377777777777777655432 2457778888887776
Q ss_pred CCccCCCCCCCCCCCCCCEEECcCCcCCcc---CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhh
Q 048194 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGT---VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKIL 468 (558)
Q Consensus 392 ~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 468 (558)
+..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..+.. +
T Consensus 439 ----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------l 499 (606)
T 3t6q_A 439 ----ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS---------------L 499 (606)
T ss_dssp ----TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT---------------C
T ss_pred ----CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc---------------c
Confidence 45677889999999999999999863 3367899999999999999999888877754 8
Q ss_pred ccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccch
Q 048194 469 NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534 (558)
Q Consensus 469 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 534 (558)
++|++|++++|.+++..+..+..+++| .|++++|++++..|..+..+++|+.|++++|++....+
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999999999999 99999999998888889999999999999999986544
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-46 Score=408.44 Aligned_cols=479 Identities=21% Similarity=0.201 Sum_probs=307.3
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.++++|+++++.+.+..+. .+..+++|++|++++|.+.+. .|..++++++|++|++++|.+++..+..|+++++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 5788999999888876655 688888999999998888876 7788888889999999888888544456888888999
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccc-cccchhhh----
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNA-SSSALDTQ---- 219 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~l~~l---- 219 (558)
|++++|.+.+..+. .++++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..+.. ....++.+
T Consensus 102 L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChh-HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 99988888733333 5788888888888888888777777888888888888888877655443211 11222222
Q ss_pred ------hchhhh-----------------------------------------------cccCCC--CCCCEEEcccccC
Q 048194 220 ------IKRVYS-----------------------------------------------CLGLRT--QKLTPLLLSSNNL 244 (558)
Q Consensus 220 ------i~~~~~-----------------------------------------------~~~~~~--~~L~~L~l~~n~l 244 (558)
.|..+. .....+ ++|++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 111100 001222 2377777777777
Q ss_pred CcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC------CCC-----CCCCCCCCCEEecCC
Q 048194 245 NGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR------EIP-----NLKNQSQLQYLYLSE 313 (558)
Q Consensus 245 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~------~l~-----~~~~~~~L~~L~l~~ 313 (558)
+ .++...+..+++|++|++++|.+.+..+.. +..+++|+.|++++|... .+| .+..+++|++|++++
T Consensus 261 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 261 N-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp C-EECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred C-ccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 6 344456777788888888888776554433 444455555555443221 122 134455555555555
Q ss_pred CcccccCChhHHhhcc--------------------------ccceEEEcCCccccccCCC--CCCCccCEEEcccccCc
Q 048194 314 NQISREIPNWIWRVSV--------------------------VGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLR 365 (558)
Q Consensus 314 n~l~~~~~~~~~~~~~--------------------------~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~ 365 (558)
|.+.+..+..+..+.. +.|+.|++++|.+++..+. ..+++|+.|++++|.+.
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 5555444443433332 2355555555555554433 23666777777777666
Q ss_pred ccCC----CCCCCCcEEEccCCcccccCCCC---------------Cc--cCCCCCCCCCCCCCCEEECcCCcCCccCCc
Q 048194 366 GNIH----QLPNNPIYIDFSNNNFTSSIPAD---------------TV--NGTLPDTFPRNCLLQTLDLNGNRPQGTVPK 424 (558)
Q Consensus 366 ~~~~----~~~~~l~~l~l~~n~~~~~~~~~---------------~~--~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~ 424 (558)
+.++ ....+|+++++++|.+.+..+.. .+ .+.+|..+..+++|+.|++++|.+++..+.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 5444 22456666666666655322111 00 134455555566666666666666655555
Q ss_pred ccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCc
Q 048194 425 SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNA 504 (558)
Q Consensus 425 ~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 504 (558)
.+..+++|++|++++|.+++..+..+. ......+..+++|++|++++|.++...+..|+.+++|++|++++|+
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANP-------GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTST-------TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhccccccCEEeCCCCCccccchhhcc-------CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 556666666666666665543221110 0011123457888888888888886555668888888889998888
Q ss_pred CcccccccccCCCCCCeecCCCCcCcccchhhhc-CCCCCCEEeCcCCcCeee
Q 048194 505 LTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLA-SLYFLSYLNLSYNQLEGR 556 (558)
Q Consensus 505 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 556 (558)
+++..+..|..+++|+.|++++|++++..+..+. .+++|+++++++|++...
T Consensus 572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 8865566678888889999999888887777776 678888899988887653
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-48 Score=410.84 Aligned_cols=437 Identities=20% Similarity=0.207 Sum_probs=366.2
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.+++.|+++++.+++..+. .+..+++|++|++++|.+.+. .+..|+++++|++|++++|.+++..|..|.++++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 5799999999999877776 799999999999999999876 6788999999999999999999777889999999999
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchh
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRV 223 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~ 223 (558)
|++++|.++ .++...++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+
T Consensus 105 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------- 169 (570)
T 2z63_A 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-------------- 169 (570)
T ss_dssp EECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG--------------
T ss_pred ccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc--------------
Confidence 999999998 4543358999999999999999986 479999999999999999999987666554
Q ss_pred hhcccCCCCCC----CEEEcccccCCcccChhhhcCCCCCCEEEccCCc-------------------------------
Q 048194 224 YSCLGLRTQKL----TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNS------------------------------- 268 (558)
Q Consensus 224 ~~~~~~~~~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~------------------------------- 268 (558)
..+++| +.|++++|.+. .++...+... +|++|++++|.
T Consensus 170 -----~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 170 -----RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp -----HHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred -----cchhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 444455 67777777776 3333444443 56666666552
Q ss_pred ---------------------------ccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccC
Q 048194 269 ---------------------------LAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREI 320 (558)
Q Consensus 269 ---------------------------l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~ 320 (558)
+.+..+.. +..+++|+.|++++|.++.+|. +..+ +|++|++++|.+. .+
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l 319 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QF 319 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SC
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-cc
Confidence 22222222 6667899999999999999998 7777 9999999999986 55
Q ss_pred ChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccC--C---CCCCCCcEEEccCCcccccCCCCCcc
Q 048194 321 PNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNI--H---QLPNNPIYIDFSNNNFTSSIPADTVN 395 (558)
Q Consensus 321 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~--~---~~~~~l~~l~l~~n~~~~~~~~~~~~ 395 (558)
|.. . .++|++|++++|.+....+...+++|+.|++++|.+.+.. + ....+|+++++++|.+.
T Consensus 320 ~~~--~--l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~--------- 386 (570)
T 2z63_A 320 PTL--K--LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--------- 386 (570)
T ss_dssp CBC--B--CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE---------
T ss_pred Ccc--c--ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc---------
Confidence 542 3 3459999999999887776666999999999999988543 2 24678999999999988
Q ss_pred CCCCCCCCCCCCCCEEECcCCcCCccCC-cccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEE
Q 048194 396 GTLPDTFPRNCLLQTLDLNGNRPQGTVP-KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSI 474 (558)
Q Consensus 396 ~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L 474 (558)
.++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.. +++|++|
T Consensus 387 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------l~~L~~L 450 (570)
T 2z63_A 387 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------LSSLEVL 450 (570)
T ss_dssp -EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT---------------CTTCCEE
T ss_pred -cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc---------------CCcCcEE
Confidence 344458889999999999999987665 57889999999999999999888776654 8999999
Q ss_pred ECCCCccc-ccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcC
Q 048194 475 DFSTNNFK-GPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553 (558)
Q Consensus 475 ~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l 553 (558)
++++|.++ +.+|..++.+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 99999997 56788999999999999999999988899999999999999999999988888899999999999999999
Q ss_pred eeecC
Q 048194 554 EGRFQ 558 (558)
Q Consensus 554 ~~~~~ 558 (558)
++.+|
T Consensus 531 ~~~~~ 535 (570)
T 2z63_A 531 DCSCP 535 (570)
T ss_dssp CCCTT
T ss_pred cCCCc
Confidence 98765
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7e-47 Score=404.70 Aligned_cols=429 Identities=19% Similarity=0.157 Sum_probs=359.1
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.++++|++++|.+++..+. .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..+..++++++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDK--AWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred ccCcEEeCCCCcccccCHH--HhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 7899999999999987777 789999999999999999887 7899999999999999999999777788999999999
Q ss_pred Eecccccccc-cccchhhcCCCCccEEEccCCccCccCCccccCCCCCC----EEeCccccCCCCCCccccccccchhhh
Q 048194 145 LDFSFNQFSG-SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQ----QLQLANNQFGGSIPRFSNASSSALDTQ 219 (558)
Q Consensus 145 L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~~l~~l 219 (558)
|++++|.+.+ .+|. .++++++|++|++++|.+++..+..+..+++|+ +|++++|.+++..+..+... .++.+
T Consensus 133 L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~--~L~~L 209 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI--KLHEL 209 (606)
T ss_dssp EECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC--EEEEE
T ss_pred EeCCCCcccceechH-hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc--eeeee
Confidence 9999999985 3465 689999999999999999987777777665544 78888888775444332210 12111
Q ss_pred -----------hc-----------------------------------------------------hhhhcccCCCCCCC
Q 048194 220 -----------IK-----------------------------------------------------RVYSCLGLRTQKLT 235 (558)
Q Consensus 220 -----------i~-----------------------------------------------------~~~~~~~~~~~~L~ 235 (558)
+| ..... ...+++|+
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~ 288 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVS 288 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCS
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCC
Confidence 00 00000 25678999
Q ss_pred EEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCc
Q 048194 236 PLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ 315 (558)
Q Consensus 236 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~ 315 (558)
.|++++|.+. .++ .+..+++|++|++++|.+ +..+ . + .+++|+.|++++|+...-..+..+++|++|++++|.
T Consensus 289 ~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 289 AMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-T-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNA 361 (606)
T ss_dssp EEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-C-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSC
T ss_pred EEEecCccch-hhh--hccccccCCEEEcccccC-cccc-c-C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCc
Confidence 9999999986 566 688899999999999999 4555 3 5 899999999999955422247789999999999999
Q ss_pred cccc--CChhHHhhccccceEEEcCCccccccCCCC-CCCccCEEEcccccCcccCC----CCCCCCcEEEccCCccccc
Q 048194 316 ISRE--IPNWIWRVSVVGLHCLNLSHNFLVGFQAPY-SIPALRFIDLISNQLRGNIH----QLPNNPIYIDFSNNNFTSS 388 (558)
Q Consensus 316 l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~~L~~L~l~~n~~~~~~~----~~~~~l~~l~l~~n~~~~~ 388 (558)
+.+. .+..+..++. |++|++++|.+++.+... .+++|+.|++++|++.+..+ ..+.+|++|++++|.+.
T Consensus 362 l~~~~~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-- 437 (606)
T 3vq2_A 362 LSFSGCCSYSDLGTNS--LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-- 437 (606)
T ss_dssp EEEEEECCHHHHCCSC--CCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE--
T ss_pred cCCCcchhhhhccCCc--ccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC--
Confidence 9865 3777777766 999999999999877554 49999999999999997765 23679999999999998
Q ss_pred CCCCCccCCCCCCCCCCCCCCEEECcCCcCCc-cCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhh
Q 048194 389 IPADTVNGTLPDTFPRNCLLQTLDLNGNRPQG-TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467 (558)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~ 467 (558)
+..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..
T Consensus 438 -------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------- 495 (606)
T 3vq2_A 438 -------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT--------------- 495 (606)
T ss_dssp -------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---------------
T ss_pred -------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc---------------
Confidence 4567889999999999999999997 47889999999999999999999888877654
Q ss_pred hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCC-CCCeecCCCCcCcccch
Q 048194 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLK-RLESLDLSMNNLSRAIP 534 (558)
Q Consensus 468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~ 534 (558)
+++|++|++++|.+++..|..++.+++|++|++++|+++ .+|..+..++ +|+.|++++|++....+
T Consensus 496 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 899999999999999988999999999999999999999 7888899997 59999999999986444
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9e-47 Score=399.07 Aligned_cols=432 Identities=17% Similarity=0.160 Sum_probs=331.0
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.++++|++++|.+++..+. .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..|..|+++++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 4799999999999887777 789999999999999999886 6788999999999999999999777777999999999
Q ss_pred Eeccccccccc-ccchhhcCCCCccEEEccCCccCccCC-ccccCCCCCCEEeCccccCCCCCCccccccccchhhhhch
Q 048194 145 LDFSFNQFSGS-ISSIRWEHLLNLVCAVLSDNSLDGSIP-RSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKR 222 (558)
Q Consensus 145 L~L~~n~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~ 222 (558)
|++++|.+++. .+. .++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+
T Consensus 103 L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l------------- 168 (549)
T 2z81_A 103 LNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL------------- 168 (549)
T ss_dssp EECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-------------
T ss_pred EECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh-------------
Confidence 99999999853 243 58899999999999998544554 678999999999999999998777766
Q ss_pred hhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccC--CCccc----------------------
Q 048194 223 VYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDE--SSRNY---------------------- 278 (558)
Q Consensus 223 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~---------------------- 278 (558)
..+++|++|++++|.+. .++...+..+++|++|++++|++.+.. +....
T Consensus 169 ------~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 169 ------KSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp ------TTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ------hccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 55566666666666554 334333445566666666666655431 11112
Q ss_pred ------CCCCCCCEEecCCCCCCCCCC--------CCCCCCCCEEecCCCccccc-----CChhHHhhccccceEEEcCC
Q 048194 279 ------SFSPMLELLNLASCKLREIPN--------LKNQSQLQYLYLSENQISRE-----IPNWIWRVSVVGLHCLNLSH 339 (558)
Q Consensus 279 ------~~~~~L~~L~l~~n~l~~l~~--------~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~~~~L~~L~ls~ 339 (558)
..++.|+.+++++|.+..++. +..+++++.|++.++.+... ++....... ++++|++++
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~--~L~~L~l~~ 319 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE--KVKRITVEN 319 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST--TCCEEEEES
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc--cceEEEecc
Confidence 234455555555554433221 34556667777666654321 122222223 489999999
Q ss_pred ccccccCCCC--CCCccCEEEcccccCcccCC------CCCCCCcEEEccCCcccccCCCCCccCCCC---CCCCCCCCC
Q 048194 340 NFLVGFQAPY--SIPALRFIDLISNQLRGNIH------QLPNNPIYIDFSNNNFTSSIPADTVNGTLP---DTFPRNCLL 408 (558)
Q Consensus 340 n~l~~~~~~~--~~~~L~~L~l~~n~~~~~~~------~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p---~~~~~~~~L 408 (558)
|.+..++... .+++|+.|++++|++.+.++ ..+++|++|++++|.+++ ++ ..+..+++|
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~~~~~~~~l~~L 389 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS----------MQKTGEILLTLKNL 389 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC----------HHHHHHHGGGCTTC
T ss_pred CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc----------cccchhhhhcCCCC
Confidence 9988665543 38999999999999987542 346789999999999872 22 346778889
Q ss_pred CEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchh
Q 048194 409 QTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILED 488 (558)
Q Consensus 409 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 488 (558)
++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+ .++|++|++++|++++..
T Consensus 390 ~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-----------------~~~L~~L~Ls~N~l~~~~--- 447 (549)
T 2z81_A 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-----------------PQTLEVLDVSNNNLDSFS--- 447 (549)
T ss_dssp CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS-----------------CTTCSEEECCSSCCSCCC---
T ss_pred CEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh-----------------cCCceEEECCCCChhhhc---
Confidence 99999999998 678888889999999999999873 33322 468999999999998743
Q ss_pred hcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeec
Q 048194 489 VGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRF 557 (558)
Q Consensus 489 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 557 (558)
..+++|++|++++|+++ .+|. ...+++|+.|+|++|++++..|..+..+++|++|++++|++++..
T Consensus 448 -~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 448 -LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp -CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred -ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 57899999999999998 6776 578999999999999999988888999999999999999998765
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-46 Score=411.40 Aligned_cols=472 Identities=21% Similarity=0.165 Sum_probs=311.9
Q ss_pred CCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCC
Q 048194 54 CDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIP 133 (558)
Q Consensus 54 c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 133 (558)
|.|..+.+ -..++++|+|++|.+++..+. .+..+++|++|++++|...+...|..|.++++|++|+|++|.+.+..|
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 56777777 448899999999999887777 799999999999999976655237889999999999999999998889
Q ss_pred hhccCCCCCcEEecccccccccccc-hhhcCCCCccEEEccCCccCccCC-ccccCCCCCCEEeCccccCCCCCCccccc
Q 048194 134 VQISRMARLVALDFSFNQFSGSISS-IRWEHLLNLVCAVLSDNSLDGSIP-RSMFEFPMLQQLQLANNQFGGSIPRFSNA 211 (558)
Q Consensus 134 ~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 211 (558)
..|.++++|++|+|++|.+++.++. ..++++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 9999999999999999999975533 248899999999999999987655 57899999999999999998777665521
Q ss_pred c-ccchhhh----------hchhhhcccCCCC------CCCEEEcccccCCcccChhhh---------------------
Q 048194 212 S-SSALDTQ----------IKRVYSCLGLRTQ------KLTPLLLSSNNLNGTVQLDKI--------------------- 253 (558)
Q Consensus 212 ~-~~~l~~l----------i~~~~~~~~~~~~------~L~~L~l~~n~l~~~~~~~~~--------------------- 253 (558)
- ...++.+ +|..+ ..+. .|+.|++++|.+++..+....
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDW----GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCC----CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred ccCCccceEECCCCccccccccch----hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 1 0222222 11111 2222 377777777765543332111
Q ss_pred --------------cC--CCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCc
Q 048194 254 --------------LS--LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQ 315 (558)
Q Consensus 254 --------------~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~ 315 (558)
.. .++|++|++++|.+.+..+.. +..+++|+.|++++|+++.++. +..+++|++|++++|.
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 11 246777777777776554444 6677777777777777775533 6677777777777777
Q ss_pred ccccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCC
Q 048194 316 ISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADT 393 (558)
Q Consensus 316 l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 393 (558)
+.+..|..+..++. |++|++++|.+....+. ..+++|+.|++++|.+++... +++++.+++++|.++
T Consensus 326 l~~~~~~~~~~l~~--L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~------- 394 (844)
T 3j0a_A 326 LGELYSSNFYGLPK--VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLV------- 394 (844)
T ss_dssp CSCCCSCSCSSCTT--CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCC-------
T ss_pred CCccCHHHhcCCCC--CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCcc-------
Confidence 76665666665555 77777777777666553 236777777777777663221 456666666666665
Q ss_pred ccCCCCCCCCCCCCCCEEECcCCcCCccC-CcccccCCCCCEEECCCCcCcccCCccccCc-----eeecc---------
Q 048194 394 VNGTLPDTFPRNCLLQTLDLNGNRPQGTV-PKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA-----PITIK--------- 458 (558)
Q Consensus 394 ~~~~~p~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~-----~~~~~--------- 458 (558)
.+|.. ...++.|++++|.+.+.. +..+..+++|+.|++++|.+++..+...... .+.+.
T Consensus 395 ---~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 395 ---TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp ---CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred ---ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 22322 223444555555444321 1123344555555555555443222211000 00000
Q ss_pred -ccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhh
Q 048194 459 -GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQL 537 (558)
Q Consensus 459 -~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 537 (558)
+.....+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+. ++|+.|+|++|++++..|..+
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~ 546 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF 546 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC
T ss_pred cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh
Confidence 00011223467777777777777777777777777788888887777755555444 677778888887777666554
Q ss_pred cCCCCCCEEeCcCCcCee
Q 048194 538 ASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 538 ~~l~~L~~L~l~~n~l~~ 555 (558)
.+|+.+++++|++..
T Consensus 547 ---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 547 ---VSLSVLDITHNKFIC 561 (844)
T ss_dssp ---SSCCEEEEEEECCCC
T ss_pred ---CCcCEEEecCCCccc
Confidence 367777777777664
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-44 Score=392.02 Aligned_cols=434 Identities=22% Similarity=0.218 Sum_probs=266.5
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.++++|+++++.+.+..+. .+..+++|++|++++|.+... .+..|+++++|++|++++|.+++..|..|+++++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPE--LCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125 (680)
T ss_dssp TTCSEEECCSSCCCCCCTT--HHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCE
T ss_pred CcCcEEECCCCccCccCHH--HHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccccCCCCE
Confidence 5677777777777666555 667777777777777777653 3345677777777777777776555566777777777
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCccCCcccc--CCCCCCEEeCccccCCCCCCcccc------------
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMF--EFPMLQQLQLANNQFGGSIPRFSN------------ 210 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~------------ 210 (558)
|++++|.+++..+. .++++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+.
T Consensus 126 L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 126 LDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 77777776644333 356666666666666666544444332 345556666655555543332211
Q ss_pred --------------------------------------ccc--cchhhh----------hchhhhcccCCCCCCCEEEcc
Q 048194 211 --------------------------------------ASS--SALDTQ----------IKRVYSCLGLRTQKLTPLLLS 240 (558)
Q Consensus 211 --------------------------------------~~~--~~l~~l----------i~~~~~~~~~~~~~L~~L~l~ 240 (558)
..+ ..++.+ .+..+ ..+++|++|+++
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~ 280 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF----AWLPQLEYFFLE 280 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT----TTCTTCCEEECC
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc----cCcccccEeeCC
Confidence 000 112222 22333 667788888888
Q ss_pred cccCCcccChhhhcCCC---------------------------------CCCEEEccCCcccccCCCcccCCCCCCCEE
Q 048194 241 SNNLNGTVQLDKILSLG---------------------------------NLAKLDLSYNSLAVDESSRNYSFSPMLELL 287 (558)
Q Consensus 241 ~n~l~~~~~~~~~~~l~---------------------------------~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 287 (558)
+|.+.+..+ ..+..++ +|++|++++|.+.+..+.. +..+++|++|
T Consensus 281 ~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L 358 (680)
T 1ziw_A 281 YNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYL 358 (680)
T ss_dssp SCCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT-TTTCTTCCEE
T ss_pred CCccCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH-hccccCCcEE
Confidence 887764322 3344444 4444444444444333222 3344444444
Q ss_pred ecCCC----------------------------CCCCCCC--CCCCCCCCEEecCCCcccccCC-hhHHhhccccceEEE
Q 048194 288 NLASC----------------------------KLREIPN--LKNQSQLQYLYLSENQISREIP-NWIWRVSVVGLHCLN 336 (558)
Q Consensus 288 ~l~~n----------------------------~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~ 336 (558)
++++| +++.++. +..+++|++|++++|.+.+.+| ..+..+.. |++|+
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~--L~~L~ 436 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN--IFEIY 436 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT--CCEEE
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccc--ccEEe
Confidence 44333 2222211 3334444444444444433332 22322222 44444
Q ss_pred cCCccccccCCC--CCCCccCEEEcccccCc--ccCCCC---CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCC
Q 048194 337 LSHNFLVGFQAP--YSIPALRFIDLISNQLR--GNIHQL---PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ 409 (558)
Q Consensus 337 ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~--~~~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~ 409 (558)
+++|.+.+..+. ..++.|+.|++++|.+. +.+|.. +.+|++|++++|.++ +..+..+..+++|+
T Consensus 437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~---------~i~~~~~~~l~~L~ 507 (680)
T 1ziw_A 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA---------NINDDMLEGLEKLE 507 (680)
T ss_dssp CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCTTCC
T ss_pred cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC---------cCChhhhccccccC
Confidence 444444433322 12455555555555443 223322 346778888888777 34456688999999
Q ss_pred EEECcCCcCCccCC--------cccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194 410 TLDLNGNRPQGTVP--------KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF 481 (558)
Q Consensus 410 ~L~l~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 481 (558)
+|++++|.+++..+ ..+..+++|++|++++|.++...+..+. .+++|+.|++++|++
T Consensus 508 ~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~---------------~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK---------------DLFELKIIDLGLNNL 572 (680)
T ss_dssp EEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT---------------TCTTCCEEECCSSCC
T ss_pred EEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc---------------cccCcceeECCCCCC
Confidence 99999999986422 2378899999999999999843333343 389999999999999
Q ss_pred cccCchhhcccCCCCeeeCcCCcCccccccccc-CCCCCCeecCCCCcCcccch
Q 048194 482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG-NLKRLESLDLSMNNLSRAIP 534 (558)
Q Consensus 482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~ 534 (558)
++..+..|..+++|+.|++++|++++..+..+. .+++|+.|++++|++....+
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 987777889999999999999999987777777 78999999999999986543
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-45 Score=401.46 Aligned_cols=430 Identities=21% Similarity=0.196 Sum_probs=308.2
Q ss_pred CCEEEEEcCCCCccccc-cCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChh--ccCCCC
Q 048194 65 GHVIGLDLSTESISGGI-ENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQ--ISRMAR 141 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~ 141 (558)
.+++.|++++|...+.+ +. .+..+++|++|+|++|.+.+. .|..|+++++|++|+|++|.+++.+|.. +.++++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp CSCSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred ccCeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 67889999988666555 44 688899999999999988876 7888999999999999999988766665 888999
Q ss_pred CcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCC--CCCCEEeCccccCCCCCCcccccccc-----
Q 048194 142 LVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEF--PMLQQLQLANNQFGGSIPRFSNASSS----- 214 (558)
Q Consensus 142 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~----- 214 (558)
|++|++++|.+++..+...++++++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..|..+.....
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 99999999988855443358889999999999988877777666555 55666666666555444332211000
Q ss_pred chhhh----------hchhhh--------------------------------cccC--CCCCCCEEEcccccCCcccCh
Q 048194 215 ALDTQ----------IKRVYS--------------------------------CLGL--RTQKLTPLLLSSNNLNGTVQL 250 (558)
Q Consensus 215 ~l~~l----------i~~~~~--------------------------------~~~~--~~~~L~~L~l~~n~l~~~~~~ 250 (558)
.++.+ ++..+. .... ..++|+.|++++|.+. .++.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~ 283 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNS 283 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECS
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccCh
Confidence 01111 000000 0001 2368999999999998 4455
Q ss_pred hhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhc
Q 048194 251 DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVS 328 (558)
Q Consensus 251 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 328 (558)
..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.++.++. +..+++|++|++++|.+.+..+..+..++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 77889999999999999998776666 8889999999999999987744 88999999999999999776666676666
Q ss_pred cccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCC
Q 048194 329 VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLL 408 (558)
Q Consensus 329 ~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L 408 (558)
. |++|++++|.++.+.. +++|+.+++++|++. .+|....+++.+++++|.+.+. ..+..+..+++|
T Consensus 363 ~--L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l--------~~~~~~~~l~~L 428 (844)
T 3j0a_A 363 K--LQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENL--------DILYFLLRVPHL 428 (844)
T ss_dssp C--CCEEEEETCCSCCCSS---CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSS--------TTHHHHTTCTTC
T ss_pred C--CCEEECCCCCCCcccC---CCCcchhccCCCCcc-cccccccccceeecccCccccC--------chhhhhhcCCcc
Confidence 5 9999999999886544 778888888888877 4555555666666666666521 001112344445
Q ss_pred CEEECcCCcCCcc------------------------------CCcccccCCCCCEEECCCCcCcccCCccccCceeecc
Q 048194 409 QTLDLNGNRPQGT------------------------------VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIK 458 (558)
Q Consensus 409 ~~L~l~~n~l~~~------------------------------~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~ 458 (558)
+.|++++|.+++. .+..+..+++|+.|++++|.+++..|..+
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------- 500 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF-------- 500 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS--------
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHc--------
Confidence 5555555555432 22334444555555555555544444333
Q ss_pred ccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194 459 GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI 533 (558)
Q Consensus 459 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 533 (558)
..+++|++|+|++|++++..+..+. ++|+.|++++|++++..|..+ .+|+.|++++|++....
T Consensus 501 -------~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 501 -------SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICEC 563 (844)
T ss_dssp -------SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred -------cchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccc
Confidence 3489999999999999987776665 899999999999998888765 48999999999987543
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.9e-45 Score=392.03 Aligned_cols=409 Identities=19% Similarity=0.267 Sum_probs=339.7
Q ss_pred CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCc------c---------------------------CCChhcc
Q 048194 91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA------G---------------------------QIPVQIS 137 (558)
Q Consensus 91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~------~---------------------------~~p~~l~ 137 (558)
.+++.|+|+++.+.+. +|..++++++|++|+|++|.+. + .+|..+.
T Consensus 81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 5788999999999988 9999999999999999999761 1 1111111
Q ss_pred -------------------CCCCCcEEecc--cccccccccchhhcCCCCccEEEccCCccCcc----------------
Q 048194 138 -------------------RMARLVALDFS--FNQFSGSISSIRWEHLLNLVCAVLSDNSLDGS---------------- 180 (558)
Q Consensus 138 -------------------~l~~L~~L~L~--~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------- 180 (558)
....++.+.+. .|.+++ +|. .++++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 11122222232 578886 776 699999999999999999985
Q ss_pred -CCcccc--CCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEccccc-CCc-ccChhhhcC
Q 048194 181 -IPRSMF--EFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNN-LNG-TVQLDKILS 255 (558)
Q Consensus 181 -~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~~ 255 (558)
+|..++ ++++|++|++++|.+.+.+|..+ ..+++|++|++++|+ ++| .+| ..+..
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-------------------~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~ 297 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-------------------KALPEMQLINVACNRGISGEQLK-DDWQA 297 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-------------------TTCSSCCEEECTTCTTSCHHHHH-HHHHH
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHH-------------------hcCCCCCEEECcCCCCCccccch-HHHHh
Confidence 999999 99999999999999999999877 899999999999998 887 666 34555
Q ss_pred C------CCCCEEEccCCcccccCCC-cccCCCCCCCEEecCCCCCC-CCCCCCCCCCCCEEecCCCcccccCChhHHhh
Q 048194 256 L------GNLAKLDLSYNSLAVDESS-RNYSFSPMLELLNLASCKLR-EIPNLKNQSQLQYLYLSENQISREIPNWIWRV 327 (558)
Q Consensus 256 l------~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~-~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 327 (558)
+ ++|++|++++|.++ ..|. ..+..+++|+.|++++|+++ .+|.+..+++|++|++++|++. .+|..+..+
T Consensus 298 L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 375 (636)
T 4eco_A 298 LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGF 375 (636)
T ss_dssp HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEE
T ss_pred hhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhh
Confidence 4 99999999999998 5665 13889999999999999999 9998888999999999999997 788776554
Q ss_pred cccc-ceEEEcCCccccccCCCCC---CCccCEEEcccccCcccCCCCCC----------CCcEEEccCCcccccCCCCC
Q 048194 328 SVVG-LHCLNLSHNFLVGFQAPYS---IPALRFIDLISNQLRGNIHQLPN----------NPIYIDFSNNNFTSSIPADT 393 (558)
Q Consensus 328 ~~~~-L~~L~ls~n~l~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~----------~l~~l~l~~n~~~~~~~~~~ 393 (558)
++ |++|++++|.++.++.... +++|+.|++++|.+.+.+|..+. +|++|++++|.++
T Consensus 376 --~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~------- 446 (636)
T 4eco_A 376 --TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS------- 446 (636)
T ss_dssp --CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-------
T ss_pred --cccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-------
Confidence 34 9999999999997665433 45899999999999988776444 8999999999998
Q ss_pred ccCCCCCC-CCCCCCCCEEECcCCcCCccCCcc-cccC-------CCCCEEECCCCcCcccCCccccCceeeccccchhh
Q 048194 394 VNGTLPDT-FPRNCLLQTLDLNGNRPQGTVPKS-IAKC-------KMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL 464 (558)
Q Consensus 394 ~~~~~p~~-~~~~~~L~~L~l~~n~l~~~~~~~-l~~l-------~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~ 464 (558)
.+|.. +..+++|++|++++|.++ .+|.. +... ++|+.|++++|.++ .+|..+..
T Consensus 447 ---~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------ 509 (636)
T 4eco_A 447 ---KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA------------ 509 (636)
T ss_dssp ---SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST------------
T ss_pred ---cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh------------
Confidence 45654 445889999999999999 55543 3333 39999999999998 67766540
Q ss_pred hhhhccceEEECCCCcccccCchhhcccCCCCeeeC------cCCcCcccccccccCCCCCCeecCCCCcCcccchhhhc
Q 048194 465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNL------SHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLA 538 (558)
Q Consensus 465 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 538 (558)
..+++|++|++++|.+++ +|..+..+++|++|++ ++|++.+.+|..+.++++|++|+|++|++ +.+|..+.
T Consensus 510 -~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 510 -TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp -TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred -ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 138999999999999998 8899999999999999 56778889999999999999999999999 57887765
Q ss_pred CCCCCCEEeCcCCcCee
Q 048194 539 SLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 539 ~l~~L~~L~l~~n~l~~ 555 (558)
++|++|++++|++..
T Consensus 587 --~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 587 --PNISVLDIKDNPNIS 601 (636)
T ss_dssp --TTCCEEECCSCTTCE
T ss_pred --CcCCEEECcCCCCcc
Confidence 799999999998764
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-44 Score=382.26 Aligned_cols=416 Identities=20% Similarity=0.204 Sum_probs=343.0
Q ss_pred CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEE
Q 048194 91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA 170 (558)
Q Consensus 91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 170 (558)
+++++|++++|.+.+. .+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+. .++++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEE
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-hhcCccccccc
Confidence 5799999999999886 677899999999999999999987788899999999999999999844444 68999999999
Q ss_pred EccCCccCccCCccccCCCCCCEEeCccccCCC-CCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC
Q 048194 171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGG-SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ 249 (558)
Q Consensus 171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 249 (558)
++++|.+.+..+..++++++|++|++++|.+.+ .+|..+ ..+++|++|++++|.++ .++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-------------------~~l~~L~~L~l~~n~l~-~~~ 165 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-------------------SNLTNLEHLDLSSNKIQ-SIY 165 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-------------------GGCTTCCEEECTTSCCC-EEC
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhh-------------------cccCCCCEEeCcCCccc-eec
Confidence 999999986655579999999999999999986 467766 88999999999999998 555
Q ss_pred hhhhcCCCCC----CEEEccCCcccccCCCcccCCCCCCCEEecCCCCC-------------------------------
Q 048194 250 LDKILSLGNL----AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL------------------------------- 294 (558)
Q Consensus 250 ~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l------------------------------- 294 (558)
...+..+++| +++++++|.+.+..+.. +... +|+.|++++|..
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~-~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHH-hccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 5667777777 89999999998776654 5444 688888777621
Q ss_pred ---------------------------C-CCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCcccccc
Q 048194 295 ---------------------------R-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF 345 (558)
Q Consensus 295 ---------------------------~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 345 (558)
. .+|. +..+++|++|++++|.+. .+|..+... . |++|++++|.+..+
T Consensus 244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~--L~~L~l~~n~~~~l 319 (570)
T 2z63_A 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G--WQHLELVNCKFGQF 319 (570)
T ss_dssp EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-C--CSEEEEESCBCSSC
T ss_pred hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-C--ccEEeeccCccccc
Confidence 1 2233 566788888888888876 567666555 3 88888888888754
Q ss_pred CCCCCCCccCEEEcccccCcccCCC-CCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCc
Q 048194 346 QAPYSIPALRFIDLISNQLRGNIHQ-LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPK 424 (558)
Q Consensus 346 ~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~ 424 (558)
+. ..+++|+.|++++|.+.+..+. .+++|++|++++|.+++. +..|..+..+++|++|++++|.+.+..+
T Consensus 320 ~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~~~~~~L~~L~l~~n~l~~~~~- 390 (570)
T 2z63_A 320 PT-LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK-------GCCSQSDFGTTSLKYLDLSFNGVITMSS- 390 (570)
T ss_dssp CB-CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE-------EEEEHHHHTCSCCCEEECCSCSEEEEEE-
T ss_pred Cc-ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc-------ccccccccccCccCEEECCCCccccccc-
Confidence 43 4588888888888887766553 467888999988888732 1124556778889999999998885444
Q ss_pred ccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCc
Q 048194 425 SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNA 504 (558)
Q Consensus 425 ~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 504 (558)
.+..+++|+.|++++|.+.+..|... +..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 391 ~~~~l~~L~~L~l~~n~l~~~~~~~~--------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 391 NFLGLEQLEHLDFQHSNLKQMSEFSV--------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp EEETCTTCCEEECTTSEEESCTTSCT--------------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred cccccCCCCEEEccCCccccccchhh--------------hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence 48889999999999998887655322 1248999999999999999899999999999999999999
Q ss_pred Cc-ccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeec
Q 048194 505 LT-GSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRF 557 (558)
Q Consensus 505 l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 557 (558)
++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..
T Consensus 457 l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence 97 578999999999999999999999988999999999999999999998854
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-44 Score=376.48 Aligned_cols=426 Identities=19% Similarity=0.192 Sum_probs=307.9
Q ss_pred EEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEec
Q 048194 68 IGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDF 147 (558)
Q Consensus 68 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 147 (558)
+.+++++++++. +|. .+. ++|++|++++|.+.+. .|..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 3 ~~l~ls~n~l~~-ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSS-CCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCccc-ccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 467888888874 444 333 7888888888888776 5677888888888888888888777788888888888888
Q ss_pred ccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhc
Q 048194 148 SFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSC 226 (558)
Q Consensus 148 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~ 226 (558)
++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+. .+
T Consensus 77 s~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~----------------- 132 (520)
T 2z7x_B 77 SHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SV----------------- 132 (520)
T ss_dssp CSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GG-----------------
T ss_pred CCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hc-----------------
Confidence 888887 56542 78888888888888876 4677888888888888888887642 12
Q ss_pred ccCCCCCC--CEEEcccccC--CcccChhhhcCCC-CCCEEEccCCcccccCCCcccCCCCCCCEEecCCCC-------C
Q 048194 227 LGLRTQKL--TPLLLSSNNL--NGTVQLDKILSLG-NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK-------L 294 (558)
Q Consensus 227 ~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-------l 294 (558)
..+++| ++|++++|.+ .+..+ ..+..+. ....+++++|.+.+..+...+..+++|+.+++++|. +
T Consensus 133 --~~l~~L~L~~L~l~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 133 --LPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp --GGGTTSCEEEEEEEECTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred --cccccceeeEEEeeccccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence 445556 8888887777 43433 2333333 222455666666555555445566666666666664 1
Q ss_pred C-CCCCCCCCC---------------------------CCCEEecCCCcccccCChhH-----HhhccccceEEEcCCcc
Q 048194 295 R-EIPNLKNQS---------------------------QLQYLYLSENQISREIPNWI-----WRVSVVGLHCLNLSHNF 341 (558)
Q Consensus 295 ~-~l~~~~~~~---------------------------~L~~L~l~~n~l~~~~~~~~-----~~~~~~~L~~L~ls~n~ 341 (558)
. .+|.+..++ +|++|++++|++.|.+|..+ ..+.. |+.+++++|.
T Consensus 210 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~--L~~l~l~~n~ 287 (520)
T 2z7x_B 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA--LSIHQVVSDV 287 (520)
T ss_dssp HHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE--EEEEEEEECC
T ss_pred ecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce--eEeccccccc
Confidence 1 222233444 45555555555554555444 33333 5555555555
Q ss_pred ccccCCC--C---CCCccCEEEcccccCcccC-CCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcC
Q 048194 342 LVGFQAP--Y---SIPALRFIDLISNQLRGNI-HQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNG 415 (558)
Q Consensus 342 l~~~~~~--~---~~~~L~~L~l~~n~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~ 415 (558)
+ ..+.. . ...+|+.|++++|.+.... +..+.+|++|++++|.++ +.+|..++.+++|++|++++
T Consensus 288 ~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 288 F-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT---------DTVFENCGHLTELETLILQM 357 (520)
T ss_dssp C-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC---------TTTTTTCCCCSSCCEEECCS
T ss_pred e-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccC---------hhhhhhhccCCCCCEEEccC
Confidence 5 22110 0 0145777777777766433 256788999999999998 45778889999999999999
Q ss_pred CcCCc--cCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccC
Q 048194 416 NRPQG--TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLK 493 (558)
Q Consensus 416 n~l~~--~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 493 (558)
|++++ .+|..+..+++|++|++++|.+++.+|.... ..+++|++|++++|.+++..+..+. +
T Consensus 358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--------------SWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC--------------CCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred CccCccccchHHHhhCCCCCEEECCCCcCCcccccchh--------------ccCccCCEEECcCCCCCcchhhhhc--c
Confidence 99986 5667889999999999999999886665422 1378999999999999887776654 7
Q ss_pred CCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhh-hcCCCCCCEEeCcCCcCeee
Q 048194 494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQ-LASLYFLSYLNLSYNQLEGR 556 (558)
Q Consensus 494 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 556 (558)
+|++|++++|+++ .+|..+..+++|+.|++++|+++. +|.. +..+++|++|++++|++++.
T Consensus 422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 9999999999999 899888899999999999999994 6654 88999999999999999875
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-44 Score=388.58 Aligned_cols=411 Identities=18% Similarity=0.232 Sum_probs=341.5
Q ss_pred CCCCEEECCCCCCCCCccchhhcCCCCCCEEeC-cCCcCccCCChhc---------------------------------
Q 048194 91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNL-SDAGFAGQIPVQI--------------------------------- 136 (558)
Q Consensus 91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L-~~n~l~~~~p~~l--------------------------------- 136 (558)
.+++.|+|+++.+.+. +|..++++++|++|+| ++|.+.|..|...
T Consensus 323 ~~V~~L~Ls~~~L~G~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEE-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCc-CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5789999999999988 9999999999999999 8887766533210
Q ss_pred ------------------cCCCCCcEEeccc--ccccccccchhhcCCCCccEEEccCCccCc-----------------
Q 048194 137 ------------------SRMARLVALDFSF--NQFSGSISSIRWEHLLNLVCAVLSDNSLDG----------------- 179 (558)
Q Consensus 137 ------------------~~l~~L~~L~L~~--n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------- 179 (558)
.....++.+.+.. |.+++ +|. .++++++|++|+|++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 1122344444443 78886 776 69999999999999999997
Q ss_pred cCCcccc--CCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEccccc-CCc-ccChh----
Q 048194 180 SIPRSMF--EFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNN-LNG-TVQLD---- 251 (558)
Q Consensus 180 ~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~---- 251 (558)
.+|..++ ++++|++|++++|.+.+.+|..+ ..+++|++|++++|+ ++| .+|..
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-------------------~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L 540 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFL-------------------YDLPELQSLNIACNRGISAAQLKADWTRL 540 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-------------------GGCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHH-------------------hCCCCCCEEECcCCCCcccccchHHHHhh
Confidence 3899988 99999999999999999999877 889999999999998 887 66632
Q ss_pred --hhcCCCCCCEEEccCCcccccCCC-cccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhc
Q 048194 252 --KILSLGNLAKLDLSYNSLAVDESS-RNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVS 328 (558)
Q Consensus 252 --~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 328 (558)
.+..+++|++|++++|.+. ..|. ..+..+++|+.|++++|+++.+|.+..+++|+.|++++|.+. .+|..+..+.
T Consensus 541 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~ 618 (876)
T 4ecn_A 541 ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFT 618 (876)
T ss_dssp HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEEC
T ss_pred hhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhcc
Confidence 2234569999999999999 6665 138899999999999999999999999999999999999998 7887765543
Q ss_pred cccceEEEcCCccccccCCCCC---CCccCEEEcccccCcccCCCCC--------CCCcEEEccCCcccccCCCCCccCC
Q 048194 329 VVGLHCLNLSHNFLVGFQAPYS---IPALRFIDLISNQLRGNIHQLP--------NNPIYIDFSNNNFTSSIPADTVNGT 397 (558)
Q Consensus 329 ~~~L~~L~ls~n~l~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~--------~~l~~l~l~~n~~~~~~~~~~~~~~ 397 (558)
. +|++|++++|.++.++.... .++|+.|++++|++.+.+|..+ .+|+.|++++|.++ .
T Consensus 619 ~-~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~----------~ 687 (876)
T 4ecn_A 619 D-QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ----------K 687 (876)
T ss_dssp T-TCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC----------S
T ss_pred c-cCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC----------c
Confidence 1 39999999999997665433 3459999999999998776543 37999999999998 5
Q ss_pred CCCCC-CCCCCCCEEECcCCcCCccCCccccc--------CCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhh
Q 048194 398 LPDTF-PRNCLLQTLDLNGNRPQGTVPKSIAK--------CKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKIL 468 (558)
Q Consensus 398 ~p~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 468 (558)
+|..+ ..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.++ .+|..+.. ..+
T Consensus 688 lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-------------~~l 752 (876)
T 4ecn_A 688 FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-------------TTL 752 (876)
T ss_dssp CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-------------TTC
T ss_pred cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-------------ccC
Confidence 66554 47889999999999998 56654433 339999999999998 67766540 138
Q ss_pred ccceEEECCCCcccccCchhhcccCCCCeeeCcC------CcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCC
Q 048194 469 NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSH------NALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYF 542 (558)
Q Consensus 469 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 542 (558)
++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++
T Consensus 753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~ 828 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQ 828 (876)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SS
T ss_pred CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CC
Confidence 999999999999997 788899999999999976 788889999999999999999999999 68888765 69
Q ss_pred CCEEeCcCCcCee
Q 048194 543 LSYLNLSYNQLEG 555 (558)
Q Consensus 543 L~~L~l~~n~l~~ 555 (558)
|+.|+|++|++..
T Consensus 829 L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 829 LYILDIADNPNIS 841 (876)
T ss_dssp SCEEECCSCTTCE
T ss_pred CCEEECCCCCCCc
Confidence 9999999999864
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-41 Score=347.11 Aligned_cols=363 Identities=20% Similarity=0.221 Sum_probs=186.2
Q ss_pred CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCC-ChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194 91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQI-PVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC 169 (558)
Q Consensus 91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 169 (558)
++|++|++++|.+.+. .|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..+. .++++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTTCCE
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCcccCCE
Confidence 4566666666666554 4555666666666666666554333 34455566666666666655533233 3555555555
Q ss_pred EEccCCccCccCCcc--ccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcc
Q 048194 170 AVLSDNSLDGSIPRS--MFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT 247 (558)
Q Consensus 170 L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~ 247 (558)
|++++|.+++..+.. +..+++|++|++++|.+++..|.
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------------------------- 147 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA---------------------------------------- 147 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC----------------------------------------
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc----------------------------------------
Confidence 555555554433322 44555555555555555444333
Q ss_pred cChhhhcCCCCCCEEEccCCcccccCCCcccCCC--CCCCEEecCCCCCCCCCC----------CCCCCCCCEEecCCCc
Q 048194 248 VQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN----------LKNQSQLQYLYLSENQ 315 (558)
Q Consensus 248 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~l~~l~~----------~~~~~~L~~L~l~~n~ 315 (558)
..+..+++|++|++++|.+.+..+.. +..+ ..++.+++++|.++.++. +..+++|++|++++|+
T Consensus 148 ---~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 148 ---SFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp ---GGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred ---cccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 22444455555555555554433332 2222 456666666666665543 2356789999999999
Q ss_pred ccccCChhHHhh-ccccceEEEcCCccccccCCCCC-CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCC
Q 048194 316 ISREIPNWIWRV-SVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADT 393 (558)
Q Consensus 316 l~~~~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 393 (558)
+.+..|..+... ...+++.|++++|...+...... ++.+.
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------------------------------- 265 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD-------------------------------------- 265 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC--------------------------------------
T ss_pred ccccchhhhhccccccceeeEeeccccccccccchhhhccCc--------------------------------------
Confidence 988888777654 22347777777776554321100 11000
Q ss_pred ccCCCCCCCC--CCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccc
Q 048194 394 VNGTLPDTFP--RNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF 471 (558)
Q Consensus 394 ~~~~~p~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L 471 (558)
+..+. ..++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+.. +++|
T Consensus 266 -----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------l~~L 325 (455)
T 3v47_A 266 -----NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG---------------LTHL 325 (455)
T ss_dssp -----TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT---------------CTTC
T ss_pred -----ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC---------------cccC
Confidence 00000 1133444555555444444444444455555555555444444433322 4445
Q ss_pred eEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCC
Q 048194 472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551 (558)
Q Consensus 472 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 551 (558)
++|++++|.+++..+..++.+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 55555555554444444555555555555555555444445555555555555555555433344445555555555555
Q ss_pred cCeeec
Q 048194 552 QLEGRF 557 (558)
Q Consensus 552 ~l~~~~ 557 (558)
++++.+
T Consensus 406 ~l~~~~ 411 (455)
T 3v47_A 406 PWDCSC 411 (455)
T ss_dssp CBCCCT
T ss_pred CcccCC
Confidence 555443
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-42 Score=366.84 Aligned_cols=430 Identities=19% Similarity=0.214 Sum_probs=314.6
Q ss_pred EEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEe
Q 048194 67 VIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALD 146 (558)
Q Consensus 67 v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 146 (558)
.+.++++++++++ +|. .+. ++|++|++++|.+.+. .+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 33 ~~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CCEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3788999998885 454 232 7999999999999886 667899999999999999999987888899999999999
Q ss_pred cccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhh
Q 048194 147 FSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYS 225 (558)
Q Consensus 147 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~ 225 (558)
+++|.++ .+|.. .+++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+...
T Consensus 107 Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~------------------- 163 (562)
T 3a79_B 107 VSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL------------------- 163 (562)
T ss_dssp CTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT-------------------
T ss_pred CCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch-------------------
Confidence 9999998 67652 78999999999999986 346789999999999999998875322
Q ss_pred cccCCCCCC--CEEEcccccC--CcccChhhhcCCC-CCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC--C--
Q 048194 226 CLGLRTQKL--TPLLLSSNNL--NGTVQLDKILSLG-NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR--E-- 296 (558)
Q Consensus 226 ~~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~-- 296 (558)
..++++ ++|++++|.+ ++..+ ..+..+. ..-.+++++|.+.+..+...+..+++|+.+++++|+.. .
T Consensus 164 ---~~l~~L~L~~L~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~ 239 (562)
T 3a79_B 164 ---LPVAHLHLSCILLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239 (562)
T ss_dssp ---GGGTTSCEEEEEEEESSCCCCSSSC-CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH
T ss_pred ---hhhhhceeeEEEeecccccccccCc-ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHH
Confidence 333444 8999998888 54444 3344433 11145666676665554444556667777777766421 1
Q ss_pred --CCCCCCCC---------------------------CCCEEecCCCcccccCChhHHhhcccc---ceEEEcCCccccc
Q 048194 297 --IPNLKNQS---------------------------QLQYLYLSENQISREIPNWIWRVSVVG---LHCLNLSHNFLVG 344 (558)
Q Consensus 297 --l~~~~~~~---------------------------~L~~L~l~~n~l~~~~~~~~~~~~~~~---L~~L~ls~n~l~~ 344 (558)
++.+..++ +|++|++++|.+.|.+|..+....... |+.++++.+.+ .
T Consensus 240 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~ 318 (562)
T 3a79_B 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-L 318 (562)
T ss_dssp HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-S
T ss_pred HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-e
Confidence 11133334 455555555555444444431111111 22222222222 1
Q ss_pred cCCC-----CCCCccCEEEcccccCcccCC-CCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcC
Q 048194 345 FQAP-----YSIPALRFIDLISNQLRGNIH-QLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRP 418 (558)
Q Consensus 345 ~~~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l 418 (558)
.+.. ....+|+.|++++|.+..... ..+.+|++|++++|.++ +.+|..++.+++|++|++++|++
T Consensus 319 ~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L~~N~l 389 (562)
T 3a79_B 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT---------DSVFQGCSTLKRLQTLILQRNGL 389 (562)
T ss_dssp SCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC---------TTTTTTCCSCSSCCEEECCSSCC
T ss_pred cChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccc---------cchhhhhcccCCCCEEECCCCCc
Confidence 1000 012458888888888764433 56789999999999998 45778889999999999999999
Q ss_pred Cc--cCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCC
Q 048194 419 QG--TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLY 496 (558)
Q Consensus 419 ~~--~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 496 (558)
++ .+|..+..+++|++|++++|.+++.+|..... .+++|++|++++|.+++..+..+. ++|+
T Consensus 390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--------------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~ 453 (562)
T 3a79_B 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA--------------WAESILVLNLSSNMLTGSVFRCLP--PKVK 453 (562)
T ss_dssp CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC--------------CCTTCCEEECCSSCCCGGGGSSCC--TTCS
T ss_pred CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc--------------CcccCCEEECCCCCCCcchhhhhc--CcCC
Confidence 86 34567899999999999999999867765322 378999999999999876665553 7999
Q ss_pred eeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhh-hcCCCCCCEEeCcCCcCeeec
Q 048194 497 GLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQ-LASLYFLSYLNLSYNQLEGRF 557 (558)
Q Consensus 497 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 557 (558)
+|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|++++..
T Consensus 454 ~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 9999999999 78888889999999999999999 46655 899999999999999998753
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.7e-41 Score=360.14 Aligned_cols=455 Identities=20% Similarity=0.199 Sum_probs=335.8
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
..+++|||++|.+++..+. .|..+++|++|+|++|.+.+. .+..|.++++|++|+|++|++++..+..|.++++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 4799999999999977766 799999999999999999886 6678999999999999999999766778999999999
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCCccccccccchhhh----
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ---- 219 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l---- 219 (558)
|++++|+++ .++...++++++|++|++++|.+.+ ..|..+..+++|++|++++|++++..+..+.. +..+...
T Consensus 129 L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-L~~l~~~~~~~ 206 (635)
T 4g8a_A 129 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSL 206 (635)
T ss_dssp EECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCCEE
T ss_pred EECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc-hhhhhhhhhhh
Confidence 999999999 5544468999999999999999975 46788899999999999999998765544321 1000000
Q ss_pred ---------hchhh---------------------hcccCCCCCCCEEEcc-----------------------------
Q 048194 220 ---------IKRVY---------------------SCLGLRTQKLTPLLLS----------------------------- 240 (558)
Q Consensus 220 ---------i~~~~---------------------~~~~~~~~~L~~L~l~----------------------------- 240 (558)
++... ......+..++...+.
T Consensus 207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 00000 0000112222222111
Q ss_pred -cccCCc--ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCccc
Q 048194 241 -SNNLNG--TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 317 (558)
Q Consensus 241 -~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~ 317 (558)
.+.... ......+..+.+++.+.+.++.+..... +.....++.|++.+|.+..++. ..+..|+.+++.+|...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---GGSCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSC
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccccc---cccchhhhhhhcccccccCcCc-ccchhhhhcccccccCC
Confidence 100000 0001223445678888888877654432 4556778888888888776664 34567888888887764
Q ss_pred ccCChhHHhhccccceEEEcCCccccccCCC----CCCCccCEEEcccccCcccCCC--CCCCCcEEEccCCcccccCCC
Q 048194 318 REIPNWIWRVSVVGLHCLNLSHNFLVGFQAP----YSIPALRFIDLISNQLRGNIHQ--LPNNPIYIDFSNNNFTSSIPA 391 (558)
Q Consensus 318 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~L~~L~l~~n~~~~~~~~--~~~~l~~l~l~~n~~~~~~~~ 391 (558)
.... ...+ ++|+.+++++|.+...... ..+.+|+.+++..+......+. ...+++.+++..+.....
T Consensus 363 ~~~~--~~~l--~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--- 435 (635)
T 4g8a_A 363 NAFS--EVDL--PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM--- 435 (635)
T ss_dssp CBCC--CCBC--TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST---
T ss_pred CCcc--cccc--cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc---
Confidence 3222 2223 3488888888887654322 2367888888888876644333 356788888888776632
Q ss_pred CCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcc-cCCccccCceeeccccchhhhhhhcc
Q 048194 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD-KFPCSLYDAPITIKGLDIKLQKILNI 470 (558)
Q Consensus 392 ~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ 470 (558)
..+..+..+.+++.++++.|.+.+..+..+..+++|+.|++++|.+.+ ..|..+.. +++
T Consensus 436 -----~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~---------------l~~ 495 (635)
T 4g8a_A 436 -----SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---------------LRN 495 (635)
T ss_dssp -----TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------CTT
T ss_pred -----ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh---------------ccc
Confidence 123456778889999999999988888888889999999999987543 45555433 788
Q ss_pred ceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCC-CCCCEEeCc
Q 048194 471 FTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASL-YFLSYLNLS 549 (558)
Q Consensus 471 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~ 549 (558)
|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|+.|||++|++++..|..+..+ ++|++|+++
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 9999999999998888899999999999999999998888889999999999999999998888888887 689999999
Q ss_pred CCcCee
Q 048194 550 YNQLEG 555 (558)
Q Consensus 550 ~n~l~~ 555 (558)
+|+++-
T Consensus 576 ~Np~~C 581 (635)
T 4g8a_A 576 QNDFAC 581 (635)
T ss_dssp TCCBCC
T ss_pred CCCCcc
Confidence 998863
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.1e-42 Score=362.66 Aligned_cols=436 Identities=20% Similarity=0.175 Sum_probs=331.0
Q ss_pred CCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCC
Q 048194 53 CCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQI 132 (558)
Q Consensus 53 ~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 132 (558)
.|.|.++ |+ .+++.++ .+|. .+ .++|++|++++|.+.+. .|..|.++++|++|++++|.+++..
T Consensus 3 ~C~~~~~-c~---------~~~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~ 66 (549)
T 2z81_A 3 SCDASGV-CD---------GRSRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIE 66 (549)
T ss_dssp EECTTSE-EE---------CTTSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEEC
T ss_pred cCCCCce-EE---------CCCCccc-cccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccC
Confidence 4888887 73 4555665 3444 23 27999999999999886 6788999999999999999999888
Q ss_pred ChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCC-cccc
Q 048194 133 PVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIP-RFSN 210 (558)
Q Consensus 133 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~ 210 (558)
|..|+++++|++|++++|.+++..+. .++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+
T Consensus 67 ~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~- 144 (549)
T 2z81_A 67 GDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF- 144 (549)
T ss_dssp TTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-
T ss_pred hhhccccccCCEEECCCCccCccCHH-HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh-
Confidence 88999999999999999999954444 58999999999999999986 357789999999999999998655555 344
Q ss_pred ccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecC
Q 048194 211 ASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 290 (558)
Q Consensus 211 ~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 290 (558)
..+++|++|++++|.+++..+ ..+..+++|++|++++|.+... +...+..+++|+.|+++
T Consensus 145 ------------------~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 145 ------------------AGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELR 204 (549)
T ss_dssp ------------------TTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEE
T ss_pred ------------------hcccccCeeeccCCcccccCh-hhhhccccCceEecccCccccc-chhhHhhcccccEEEcc
Confidence 788999999999999986555 6788999999999999987633 33324568999999999
Q ss_pred CCCCCCCC---C--CCCCCCCCEEecCCCcccccCChhHHhh--ccccceEEEcCCccccccCCC--------CCC----
Q 048194 291 SCKLREIP---N--LKNQSQLQYLYLSENQISREIPNWIWRV--SVVGLHCLNLSHNFLVGFQAP--------YSI---- 351 (558)
Q Consensus 291 ~n~l~~l~---~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~--------~~~---- 351 (558)
+|+++.++ . ...+++|+.|++++|.+.+..+..+... ...+++.+++++|.+.+.... ..+
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 99998753 2 4568899999999999877655544322 123488888888877654211 112
Q ss_pred -------------------------CccCEEEcccccCcccCCC----CCCCCcEEEccCCcccccCCCCCccCCCCCCC
Q 048194 352 -------------------------PALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTF 402 (558)
Q Consensus 352 -------------------------~~L~~L~l~~n~~~~~~~~----~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~ 402 (558)
++|+.+++++|++. .+|. .+.+|++|++++|.+++.+|. .+..+
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~~ 357 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK------NSACK 357 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH------HHTCT
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc------chhhh
Confidence 45666666666654 3332 256788888888877743210 02345
Q ss_pred CCCCCCCEEECcCCcCCccCC--cccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCc
Q 048194 403 PRNCLLQTLDLNGNRPQGTVP--KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNN 480 (558)
Q Consensus 403 ~~~~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 480 (558)
+.+++|++|++++|++++..+ ..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW---------------PEKMRFLNLSSTG 421 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC---------------CTTCCEEECTTSC
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc---------------cccccEEECCCCC
Confidence 667778888888888875432 45777888888888888887 45655433 6788888888888
Q ss_pred ccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194 481 FKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ 558 (558)
Q Consensus 481 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 558 (558)
++.. +..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|
T Consensus 422 l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 422 IRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred cccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 8743 3332 368888888888888532 47899999999999998 5776 4678999999999999998653
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=354.68 Aligned_cols=400 Identities=22% Similarity=0.190 Sum_probs=309.1
Q ss_pred CEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEcc
Q 048194 94 RSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLS 173 (558)
Q Consensus 94 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 173 (558)
++|++++|.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|. .++++++|++|+++
T Consensus 3 ~~l~ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH--VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS--CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECC
T ss_pred ceEecCCCCccc--cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecC
Confidence 579999999986 676665 8999999999999977778999999999999999999955455 68999999999999
Q ss_pred CCccCccCCccccCCCCCCEEeCccccCCC-CCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhh
Q 048194 174 DNSLDGSIPRSMFEFPMLQQLQLANNQFGG-SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDK 252 (558)
Q Consensus 174 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 252 (558)
+|.++ .+|.. .+++|++|++++|.+++ .+|..+ ..+++|++|++++|.+++ ..
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-------------------~~l~~L~~L~L~~n~l~~----~~ 131 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEF-------------------GNMSQLKFLGLSTTHLEK----SS 131 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGG-------------------GGCTTCCEEEEEESSCCG----GG
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhhh-------------------ccCCcceEEEecCcccch----hh
Confidence 99998 56766 89999999999999987 466666 889999999999999874 34
Q ss_pred hcCCCCC--CEEEccCCcc--cccCCCcccCCCC-CCCEEecCCCCCC-CCCC--CCCCCCCCEEecCCCc-------cc
Q 048194 253 ILSLGNL--AKLDLSYNSL--AVDESSRNYSFSP-MLELLNLASCKLR-EIPN--LKNQSQLQYLYLSENQ-------IS 317 (558)
Q Consensus 253 ~~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~~-~L~~L~l~~n~l~-~l~~--~~~~~~L~~L~l~~n~-------l~ 317 (558)
+..+++| ++|++++|.+ .+..+.. +..+. ....+++++|.+. .++. +..+++|+.+++++|. +.
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred ccccccceeeEEEeeccccccccccccc-ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 6677778 9999999999 6555554 44443 3446788888766 5555 7889999999999986 44
Q ss_pred ccCChhHHhhcc-------------------------ccceEEEcCCccccccCCC-C-----C-CCccCEEEcccccCc
Q 048194 318 REIPNWIWRVSV-------------------------VGLHCLNLSHNFLVGFQAP-Y-----S-IPALRFIDLISNQLR 365 (558)
Q Consensus 318 ~~~~~~~~~~~~-------------------------~~L~~L~ls~n~l~~~~~~-~-----~-~~~L~~L~l~~n~~~ 365 (558)
+.++ .+..+.. ++|++|++++|.+++..+. . . ++.|+.+++++|.+
T Consensus 211 ~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 211 SILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred cchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 3333 3333332 1355555555554432221 1 2 45555555555544
Q ss_pred ccCCCC-------CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECC
Q 048194 366 GNIHQL-------PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLG 438 (558)
Q Consensus 366 ~~~~~~-------~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 438 (558)
.+|.. -.+++.|++++|.+.+ ++ ....+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~----------~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVH----------ML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCCCC----------CC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred -ecchhhhhcccccCceeEEEcCCCcccc----------cc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 22210 0346777777776652 11 12578889999999999998899999999999999999
Q ss_pred CCcCcc--cCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch-hhcccCCCCeeeCcCCcCcccccccccC
Q 048194 439 NNQFSD--KFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE-DVGLLKSLYGLNLSHNALTGSIPSSFGN 515 (558)
Q Consensus 439 ~n~i~~--~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 515 (558)
+|.+++ .+|.. +..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+.
T Consensus 357 ~N~l~~l~~~~~~---------------~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~- 420 (520)
T 2z7x_B 357 MNQLKELSKIAEM---------------TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP- 420 (520)
T ss_dssp SSCCCBHHHHHHH---------------HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred CCccCccccchHH---------------HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-
Confidence 999985 33333 34489999999999999985555 488899999999999999988887765
Q ss_pred CCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194 516 LKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ 558 (558)
Q Consensus 516 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 558 (558)
++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|
T Consensus 421 -~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~ 460 (520)
T 2z7x_B 421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP 460 (520)
T ss_dssp -TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred -ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cC
Confidence 79999999999998 788888899999999999999984 44
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.4e-40 Score=337.64 Aligned_cols=392 Identities=20% Similarity=0.274 Sum_probs=230.7
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCC-------------CCEEeCcCCcCccC
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISS-------------LTYLNLSDAGFAGQ 131 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~ 131 (558)
.++++++++++.+ +.+|. .++.+++|++|++++|.+.+. +|..++++.+ +++|++++|.+++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~--~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV--EAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred ccchhhhcccCch-hhCCh--hHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 5677788888877 66776 678888888888888777766 7777777665 4788888888773
Q ss_pred CChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccc
Q 048194 132 IPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNA 211 (558)
Q Consensus 132 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 211 (558)
+|.. .++|++|++++|.+++ +|. ..++|++|++++|.+++ ++.. .++|++|++++|.+++ +|. +
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~-~-- 149 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPE-L-- 149 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCC-C--
T ss_pred CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Ccc-c--
Confidence 4442 3678888888888774 543 23678888888887763 3321 1578888888887775 553 3
Q ss_pred cccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCC
Q 048194 212 SSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS 291 (558)
Q Consensus 212 ~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 291 (558)
..+++|++|++++|++++ +|. ..++|++|++++|.+++. + . +..+++|+.|++++
T Consensus 150 -----------------~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~l-~-~-~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 150 -----------------QNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEEL-P-E-LQNLPFLTAIYADN 204 (454)
T ss_dssp -----------------TTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC-C-C-CTTCTTCCEEECCS
T ss_pred -----------------CCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCcC-c-c-ccCCCCCCEEECCC
Confidence 777788888888887773 442 235788888888877753 3 3 67778888888888
Q ss_pred CCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCC
Q 048194 292 CKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQL 371 (558)
Q Consensus 292 n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (558)
|+++.+|... ++|++|++++|.+. .+|. +..++. |++|++++|.+++++. .+++|+.|++++|++.+ +|..
T Consensus 205 N~l~~l~~~~--~~L~~L~l~~n~l~-~lp~-~~~l~~--L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 205 NSLKKLPDLP--LSLESIVAGNNILE-ELPE-LQNLPF--LTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp SCCSSCCCCC--TTCCEEECCSSCCS-SCCC-CTTCTT--CCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSC-CCCC
T ss_pred CcCCcCCCCc--CcccEEECcCCcCC-cccc-cCCCCC--CCEEECCCCcCCcccc--cccccCEEECCCCcccc-cCcc
Confidence 8887777632 47888888888776 5563 554444 8888888887776543 24678888888887775 5666
Q ss_pred CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccC-CCCCEEECCCCcCcccCCccc
Q 048194 372 PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKC-KMLEVLNLGNNQFSDKFPCSL 450 (558)
Q Consensus 372 ~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~i~~~~p~~~ 450 (558)
+.+++++++++|.+++ +|.. .++|++|++++|.+++ ++ .+ ++|++|++++|.+++ +|..
T Consensus 276 ~~~L~~L~ls~N~l~~----------l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~- 335 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSG----------LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL- 335 (454)
T ss_dssp CTTCCEEECCSSCCSE----------ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC-
T ss_pred cCcCCEEECcCCccCc----------ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc-
Confidence 6778888888887773 2211 1467888888887774 22 23 478888888888775 4432
Q ss_pred cCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcc--cccccccCC------------
Q 048194 451 YDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG--SIPSSFGNL------------ 516 (558)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l------------ 516 (558)
+++|++|++++|.++. +|. .+++|++|++++|++++ .+|.++..+
T Consensus 336 -----------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 336 -----------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp -----------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------
T ss_pred -----------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc
Confidence 4678888888888874 443 46788888888888877 677777766
Q ss_pred -CCCCeecCCCCcCcc--cchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194 517 -KRLESLDLSMNNLSR--AIPSQLASLYFLSYLNLSYNQLEGRFQ 558 (558)
Q Consensus 517 -~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~ 558 (558)
++|+.|++++|++++ .+|. +++.|.+.+|.+.+++|
T Consensus 395 ~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 395 PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYE 433 (454)
T ss_dssp ---------------------------------------------
T ss_pred cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccc
Confidence 677888888887775 3443 45566677777776653
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-39 Score=349.44 Aligned_cols=416 Identities=20% Similarity=0.188 Sum_probs=300.9
Q ss_pred CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEE
Q 048194 91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA 170 (558)
Q Consensus 91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 170 (558)
+++++|+|++|.++.. .+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|+++ .++...|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 4799999999999886 5678999999999999999999777788999999999999999998 5544468999999999
Q ss_pred EccCCccCccCCccccCCCCCCEEeCccccCCCC-CCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC
Q 048194 171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGS-IPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ 249 (558)
Q Consensus 171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 249 (558)
++++|.+++..+..++++++|++|++++|.+++. .|..+ ..+++|++|++++|++++ ++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-------------------~~l~~L~~L~L~~N~l~~-~~ 189 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-------------------SNLTNLEHLDLSSNKIQS-IY 189 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-------------------GGCTTCCEEECCSSCCCE-EC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh-------------------ccchhhhhhcccCccccc-cc
Confidence 9999999977677799999999999999999753 45554 778899999999999874 44
Q ss_pred hhhhcCCCC----CCEEEccCCcccccCCCcc-----------------------cCCCC--------------------
Q 048194 250 LDKILSLGN----LAKLDLSYNSLAVDESSRN-----------------------YSFSP-------------------- 282 (558)
Q Consensus 250 ~~~~~~l~~----L~~L~l~~n~l~~~~~~~~-----------------------~~~~~-------------------- 282 (558)
...+..+.+ ...++++.|.+....+... +..+.
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 344443332 2356666665543222110 00111
Q ss_pred -------------------------------------CCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHH
Q 048194 283 -------------------------------------MLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIW 325 (558)
Q Consensus 283 -------------------------------------~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 325 (558)
+++.+.+.++.+..++.+.....++.|++.+|.+.+..+..
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-- 347 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-- 347 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCB--
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCccc--
Confidence 12222222222222222223334444444444433221111
Q ss_pred hhccccceEEEcCCccccccCCCCCCCccCEEEcccccCccc--CCC---CCCCCcEEEccCCcccccCCCCCccCCCCC
Q 048194 326 RVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGN--IHQ---LPNNPIYIDFSNNNFTSSIPADTVNGTLPD 400 (558)
Q Consensus 326 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~--~~~---~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~ 400 (558)
...++.+++..|..........+++|+.++++.|.+... .+. ...+++++++..+... .++.
T Consensus 348 ---l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~----------~~~~ 414 (635)
T 4g8a_A 348 ---LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI----------TMSS 414 (635)
T ss_dssp ---CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE----------EECS
T ss_pred ---chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccc----------cccc
Confidence 112455555555544444434466677777776666422 111 2346667777666655 4556
Q ss_pred CCCCCCCCCEEECcCCcCCccC-CcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194 401 TFPRNCLLQTLDLNGNRPQGTV-PKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479 (558)
Q Consensus 401 ~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 479 (558)
.+..+++|+.+++..+...... +..+..+++++.+++++|.+.+..|..+.. ++.++.|++++|
T Consensus 415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~---------------~~~L~~L~Ls~N 479 (635)
T 4g8a_A 415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------LSSLEVLKMAGN 479 (635)
T ss_dssp CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT---------------CTTCCEEECTTC
T ss_pred cccccccccchhhhhcccccccccccccccccccccccccccccccccccccc---------------chhhhhhhhhhc
Confidence 6778888999999888776543 356778899999999999988777766543 889999999999
Q ss_pred ccc-ccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194 480 NFK-GPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ 558 (558)
Q Consensus 480 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 558 (558)
.+. +..|..|..+++|++|+|++|++++..|.+|.++++|++|+|++|++++..|..|.++++|++|++++|+|++..|
T Consensus 480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 854 4567889999999999999999998889999999999999999999998888999999999999999999998654
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-39 Score=336.32 Aligned_cols=371 Identities=20% Similarity=0.166 Sum_probs=259.8
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.++++|+++++.+.+..+. .+..+++|++|++++|.+.+...+..|.++++|++|++++|.+++..|..|+++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChh--HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 5799999999999987777 79999999999999999876524678999999999999999999888999999999999
Q ss_pred Eecccccccccc-cchhhcCCCCccEEEccCCccCccCCcc-ccCCCCCCEEeCccccCCCCCCccccccccchhhhhch
Q 048194 145 LDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDNSLDGSIPRS-MFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKR 222 (558)
Q Consensus 145 L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~ 222 (558)
|++++|.+++.+ +...+.++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~----------- 176 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN----------- 176 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG-----------
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc-----------
Confidence 999999998655 3224889999999999999999877876 789999999999999999877765410
Q ss_pred hhhcccCCCCCCCEEEcccccCCcccChhh--------hcCCCCCCEEEccCCcccccCCCccc--CCCCCCCEEecCCC
Q 048194 223 VYSCLGLRTQKLTPLLLSSNNLNGTVQLDK--------ILSLGNLAKLDLSYNSLAVDESSRNY--SFSPMLELLNLASC 292 (558)
Q Consensus 223 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~~L~~L~l~~n 292 (558)
....+++.|++++|.+.+ ++... +..+++|++|++++|.+.+..+.... ...++|+.|++++|
T Consensus 177 ------l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 177 ------FQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp ------GTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ------cccccccccccccCcccc-cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 122678899999988873 32221 22445677777777766554433211 11244555555554
Q ss_pred CCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCC
Q 048194 293 KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLP 372 (558)
Q Consensus 293 ~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 372 (558)
....... ..+.+.+..+..+..+. .++|+.+++++|.+.
T Consensus 250 ~~~~~~~------------~~~~~~~~~~~~~~~~~----------------------~~~L~~L~l~~n~l~------- 288 (455)
T 3v47_A 250 YNMGSSF------------GHTNFKDPDNFTFKGLE----------------------ASGVKTCDLSKSKIF------- 288 (455)
T ss_dssp TTTSCCT------------TCCSSCCCCTTTTGGGT----------------------TSCCCEEECCSSCCC-------
T ss_pred ccccccc------------chhhhccCccccccccc----------------------ccCceEEEecCcccc-------
Confidence 3321110 00111111111111111 234455555554444
Q ss_pred CCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccC
Q 048194 373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD 452 (558)
Q Consensus 373 ~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~ 452 (558)
+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..
T Consensus 289 -----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 289 -----------------------ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp -----------------------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred -----------------------ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 234555666677777777777777666667777777777777777776555544433
Q ss_pred ceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCccc
Q 048194 453 APITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA 532 (558)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 532 (558)
+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 346 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 346 ---------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp ---------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ---------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 67777777777777776677777788888888888888765555667778888888888887766
Q ss_pred ch
Q 048194 533 IP 534 (558)
Q Consensus 533 ~~ 534 (558)
.|
T Consensus 411 ~~ 412 (455)
T 3v47_A 411 CP 412 (455)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-39 Score=332.65 Aligned_cols=378 Identities=22% Similarity=0.260 Sum_probs=276.3
Q ss_pred cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCC-------------cEEecccccccc
Q 048194 88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARL-------------VALDFSFNQFSG 154 (558)
Q Consensus 88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~~~~ 154 (558)
...++|++|++++|.+ +. +|..++++++|++|++++|.+.+.+|..++++++| ++|++++|.++
T Consensus 8 ~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~- 84 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS- 84 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-
T ss_pred cccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-
Confidence 3468999999999999 55 89999999999999999999999999999988764 99999999998
Q ss_pred cccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCC
Q 048194 155 SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKL 234 (558)
Q Consensus 155 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L 234 (558)
.+|. -.++|++|++++|.+++ +|.. +++|++|++++|.+++ ++. ..++|
T Consensus 85 ~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----------------------~~~~L 133 (454)
T 1jl5_A 85 SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----------------------LPPLL 133 (454)
T ss_dssp CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----------------------CCTTC
T ss_pred cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----------------------CCCCC
Confidence 4543 13789999999999986 6653 4889999999999874 332 22689
Q ss_pred CEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCC
Q 048194 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSEN 314 (558)
Q Consensus 235 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n 314 (558)
++|++++|.+++ +| .+..+++|++|++++|++++ .+.. .++|++|++++|+++.+|.+..+++|++|++++|
T Consensus 134 ~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 134 EYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp CEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 999999999984 76 48999999999999999985 3322 3599999999999999999999999999999999
Q ss_pred cccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCc
Q 048194 315 QISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTV 394 (558)
Q Consensus 315 ~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 394 (558)
.+.+ +|... .+|++|++++|.++.++....+++|+.|++++|++++ +|..+.++++|++++|.++
T Consensus 206 ~l~~-l~~~~-----~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~-------- 270 (454)
T 1jl5_A 206 SLKK-LPDLP-----LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLT-------- 270 (454)
T ss_dssp CCSS-CCCCC-----TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCS--------
T ss_pred cCCc-CCCCc-----CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCccc--------
Confidence 9975 44432 2599999999999977654559999999999999986 6667789999999999998
Q ss_pred cCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEE
Q 048194 395 NGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSI 474 (558)
Q Consensus 395 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L 474 (558)
.+|.. +++|++|++++|.+++. +.. .++|+.|++++|.+++. +. ..++|++|
T Consensus 271 --~l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~------------------~~~~L~~L 322 (454)
T 1jl5_A 271 --DLPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CD------------------LPPSLEEL 322 (454)
T ss_dssp --CCCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CC------------------CCTTCCEE
T ss_pred --ccCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cC------------------CcCcCCEE
Confidence 34543 36799999999999862 211 26899999999998752 21 13689999
Q ss_pred ECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc--cchhhhcCC------------
Q 048194 475 DFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR--AIPSQLASL------------ 540 (558)
Q Consensus 475 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l------------ 540 (558)
++++|.+++ +|.. +++|++|++++|+++ .+|. .+++|+.|++++|++++ .+|..+..+
T Consensus 323 ~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 323 NVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------
T ss_pred ECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc
Confidence 999999996 4443 689999999999999 5776 47899999999999998 788888877
Q ss_pred -CCCCEEeCcCCcCee--ecC
Q 048194 541 -YFLSYLNLSYNQLEG--RFQ 558 (558)
Q Consensus 541 -~~L~~L~l~~n~l~~--~~~ 558 (558)
++|++|++++|+++| .||
T Consensus 395 ~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 395 PQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp ---------------------
T ss_pred cCcCCEEECCCCcCCccccch
Confidence 889999999999998 665
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.3e-39 Score=339.30 Aligned_cols=430 Identities=19% Similarity=0.182 Sum_probs=325.3
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
+++++|++++|.+.+..+. .+..+++|++|++++|.+.+. .|..|.++++|++|++++|.++ .+|.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence 6899999999999877766 799999999999999999886 7888999999999999999998 67766 8999999
Q ss_pred Eecccccccccc-cchhhcCCCCccEEEccCCccCccCCccccCCCCC--CEEeCccccC--CCCCCccccccc-cchhh
Q 048194 145 LDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPML--QQLQLANNQF--GGSIPRFSNASS-SALDT 218 (558)
Q Consensus 145 L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~~~~~~-~~l~~ 218 (558)
|++++|.+++.. |. .++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..-. ..+..
T Consensus 126 L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 126 LDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EECCCCCccccCchH-hhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 999999998532 34 689999999999999999853 34455555 9999999999 777665542100 00000
Q ss_pred h-----hch-hhhcccCCCCCCCEEEcccccC-----CcccChhhhcCCCCCCEEEccCCcccccCCCcc--cCCCCCCC
Q 048194 219 Q-----IKR-VYSCLGLRTQKLTPLLLSSNNL-----NGTVQLDKILSLGNLAKLDLSYNSLAVDESSRN--YSFSPMLE 285 (558)
Q Consensus 219 l-----i~~-~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~L~ 285 (558)
. +.. ........+++|+.+++++|.. .+.+ ..+..+++|+.+++.++.+.+...... ....++|+
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 0 000 0000113455666677666531 1111 235566677777776665543211110 11235899
Q ss_pred EEecCCCCCC-CCCC-C-----CCCCCCCEEecCCCcccccCC-hhHHhh-ccccceEEEcCCccccccCCCCCCCccCE
Q 048194 286 LLNLASCKLR-EIPN-L-----KNQSQLQYLYLSENQISREIP-NWIWRV-SVVGLHCLNLSHNFLVGFQAPYSIPALRF 356 (558)
Q Consensus 286 ~L~l~~n~l~-~l~~-~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~L~~ 356 (558)
+|++++|.++ .+|. + ..++.|+.++++.+.+ .+| .++... ...++++|++++|.+........+++|++
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 357 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence 9999999998 8887 4 5666666667777766 455 333322 23459999999999977665456899999
Q ss_pred EEcccccCcccCCCC---CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCc-ccccCCCC
Q 048194 357 IDLISNQLRGNIHQL---PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPK-SIAKCKML 432 (558)
Q Consensus 357 L~l~~n~~~~~~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L 432 (558)
|++++|++++.+|.. .++|++|++++|.+++. ..+|..+..+++|++|++++|.+++.+|. .+..+++|
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-------FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT-------THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCc-------ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 999999999876654 56899999999999831 13446788999999999999999985554 58889999
Q ss_pred CEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccc
Q 048194 433 EVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS 512 (558)
Q Consensus 433 ~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 512 (558)
++|++++|.+++..|..+ .++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 431 ~~L~l~~n~l~~~~~~~l-----------------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCL-----------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp CEEECCSSCCCGGGGSSC-----------------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred CEEECCCCCCCcchhhhh-----------------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence 999999999988766553 368999999999999 56777779999999999999999 56665
Q ss_pred -ccCCCCCCeecCCCCcCcccch
Q 048194 513 -FGNLKRLESLDLSMNNLSRAIP 534 (558)
Q Consensus 513 -l~~l~~L~~L~L~~N~l~~~~~ 534 (558)
+..+++|+.|++++|++.+..+
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp STTTCTTCCCEECCSCCBCCCHH
T ss_pred HHhcCCCCCEEEecCCCcCCCcc
Confidence 9999999999999999987554
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-39 Score=315.67 Aligned_cols=290 Identities=31% Similarity=0.473 Sum_probs=227.9
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCCC--ccceEeCCC---CCEEEEEcCCCCccc--cccCcccccCC
Q 048194 18 QCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCD--WSGVDCDEA---GHVIGLDLSTESISG--GIENAAILFSL 90 (558)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~c~~~---~~v~~L~l~~~~~~~--~~~~~~~~~~l 90 (558)
.|.++|++||++||+++.++ . .+.+|..+.|||. |.||.|... ++|++|+++++.+.+ ..+. .+..+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~-~---~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNP-T---TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCC-G---GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCc-c---cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCC
Confidence 58999999999999999643 3 6889988889998 999999864 799999999999988 7777 79999
Q ss_pred CCCCEEECCC-CCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194 91 HYLRSLNLAR-TSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC 169 (558)
Q Consensus 91 ~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 169 (558)
++|++|++++ |.+.+. +|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|. .+..+++|++
T Consensus 76 ~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~ 153 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVG 153 (313)
T ss_dssp TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCE
T ss_pred CCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCe
Confidence 9999999995 888877 888999999999999999999988999999999999999999999877766 5888999999
Q ss_pred EEccCCccCccCCccccCCC-CCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCccc
Q 048194 170 AVLSDNSLDGSIPRSMFEFP-MLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV 248 (558)
Q Consensus 170 L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 248 (558)
|++++|.+++.+|..+..++ +|++|++++|++++.+|..+ ..++ |++|++++|.+++.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-------------------~~l~-L~~L~Ls~N~l~~~- 212 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-------------------ANLN-LAFVDLSRNMLEGD- 212 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-------------------GGCC-CSEEECCSSEEEEC-
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH-------------------hCCc-ccEEECcCCcccCc-
Confidence 99999999888898898887 89999999999888777765 5555 88888888888744
Q ss_pred ChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC-CCCCCCCCEEecCCCcccccCChhHHh
Q 048194 249 QLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWR 326 (558)
Q Consensus 249 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~ 326 (558)
....+..+++|++|++++|.+.+..+. +..+++|++|++++|+++ .+|. +..+++|++|++++|++++.+|.. ..
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 346677788888888888877654433 445566666666666665 4554 555666666666666665555543 22
Q ss_pred hccccceEEEcCCcc
Q 048194 327 VSVVGLHCLNLSHNF 341 (558)
Q Consensus 327 ~~~~~L~~L~ls~n~ 341 (558)
++. |+.+++++|.
T Consensus 290 l~~--L~~l~l~~N~ 302 (313)
T 1ogq_A 290 LQR--FDVSAYANNK 302 (313)
T ss_dssp GGG--SCGGGTCSSS
T ss_pred ccc--cChHHhcCCC
Confidence 222 4444444443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-37 Score=318.84 Aligned_cols=355 Identities=18% Similarity=0.199 Sum_probs=211.0
Q ss_pred cccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCC
Q 048194 86 ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLL 165 (558)
Q Consensus 86 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 165 (558)
.+..+++|++|++++|.+.+ +| .++.+++|++|++++|.+++ +| ++.+++|++|++++|.+++ ++ +++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD---VTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC---CTTCT
T ss_pred ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee---cCCCC
Confidence 45566677777777776665 33 46667777777777777664 33 6666777777777776663 22 56667
Q ss_pred CccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCC
Q 048194 166 NLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN 245 (558)
Q Consensus 166 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~ 245 (558)
+|++|++++|.+++ ++ +..+++|++|++++|++++. + + ..+++|++|++++|...
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l-------------------~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--V-------------------SHNTQLTELDCHLNKKI 161 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--C-------------------TTCTTCCEEECTTCSCC
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--c-------------------ccCCcCCEEECCCCCcc
Confidence 77777777776664 33 66667777777777766643 2 2 55666777777776544
Q ss_pred cccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHH
Q 048194 246 GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIW 325 (558)
Q Consensus 246 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 325 (558)
+.++ +..+++|++|++++|++++.. +..+++|+.|++++|+++.++ +..+++|++|++++|++++ +| +.
T Consensus 162 ~~~~---~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~-ip--~~ 230 (457)
T 3bz5_A 162 TKLD---VTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTE-ID--VT 230 (457)
T ss_dssp CCCC---CTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred cccc---cccCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccc-cC--cc
Confidence 4442 456667777777777666532 555666777777777766653 6666777777777777664 44 33
Q ss_pred hhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCC
Q 048194 326 RVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRN 405 (558)
Q Consensus 326 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~ 405 (558)
.++. |++|++++|.+++.+ ...+++|+.|++++|. ++.+++++|.+.+ .+| ++.+
T Consensus 231 ~l~~--L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n~-----------L~~L~l~~n~~~~---------~~~--~~~l 285 (457)
T 3bz5_A 231 PLTQ--LTYFDCSVNPLTELD-VSTLSKLTTLHCIQTD-----------LLEIDLTHNTQLI---------YFQ--AEGC 285 (457)
T ss_dssp TCTT--CSEEECCSSCCSCCC-CTTCTTCCEEECTTCC-----------CSCCCCTTCTTCC---------EEE--CTTC
T ss_pred ccCC--CCEEEeeCCcCCCcC-HHHCCCCCEEeccCCC-----------CCEEECCCCccCC---------ccc--cccc
Confidence 3333 666666666666643 2336667777666653 3456666666553 333 2455
Q ss_pred CCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC
Q 048194 406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI 485 (558)
Q Consensus 406 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 485 (558)
++|+.|++++|...+.+|. ..++|+.|++++ .++|++|++++|++++.
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~----------------------------~~~L~~L~L~~N~l~~l- 333 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDC---QAAGITELDLSQ----------------------------NPKLVYLYLNNTELTEL- 333 (457)
T ss_dssp TTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT----------------------------CTTCCEEECTTCCCSCC-
T ss_pred ccCCEEECCCCcccceecc---CCCcceEechhh----------------------------cccCCEEECCCCccccc-
Confidence 6677777777766555543 223344443333 24456666666666653
Q ss_pred chhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194 486 LEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ 558 (558)
Q Consensus 486 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 558 (558)
.++.+++|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|..+++++|+++|.||
T Consensus 334 --~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 334 --DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp --CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred --ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 25556666666666666653 23445555555555543 233445555566666665554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.6e-37 Score=315.23 Aligned_cols=347 Identities=22% Similarity=0.297 Sum_probs=255.8
Q ss_pred cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194 88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL 167 (558)
Q Consensus 88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 167 (558)
..+++++.|+++++.+.. +| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+. .++. ++++++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L 114 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DITP--LANLTNL 114 (466)
T ss_dssp HHHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred hHhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccc-cChh--hcCCCCC
Confidence 456789999999888876 44 478889999999999998844 44 888999999999999888 3432 7888899
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcc
Q 048194 168 VCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT 247 (558)
Q Consensus 168 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~ 247 (558)
++|++++|.+.+. +. +..+++|++|++++|.+.+ ++. + ..+++|++|+++ +.+.+.
T Consensus 115 ~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~-~-------------------~~l~~L~~L~l~-~~~~~~ 170 (466)
T 1o6v_A 115 TGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISA-L-------------------SGLTSLQQLSFG-NQVTDL 170 (466)
T ss_dssp CEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGG-G-------------------TTCTTCSEEEEE-ESCCCC
T ss_pred CEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Chh-h-------------------ccCCcccEeecC-CcccCc
Confidence 9999998888754 33 7888889999998888774 332 2 777888888886 344322
Q ss_pred cChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhh
Q 048194 248 VQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRV 327 (558)
Q Consensus 248 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 327 (558)
..+..+++|++|++++|.+.+.. . +..+++|+.|++++|.++.++.+..+++|++|++++|.+.+. ..+..+
T Consensus 171 ---~~~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l 242 (466)
T 1o6v_A 171 ---KPLANLTTLERLDISSNKVSDIS--V-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL 242 (466)
T ss_dssp ---GGGTTCTTCCEEECCSSCCCCCG--G-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred ---hhhccCCCCCEEECcCCcCCCCh--h-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcC
Confidence 23677788888888888776432 1 566777777777777777666566677777777777776532 234333
Q ss_pred ccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCC
Q 048194 328 SVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL 407 (558)
Q Consensus 328 ~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~ 407 (558)
+. |++|++++|.+.+..+...+++|+.|++++|.+ + .++. +..+++
T Consensus 243 ~~--L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l---------------------~----------~~~~-~~~l~~ 288 (466)
T 1o6v_A 243 TN--LTDLDLANNQISNLAPLSGLTKLTELKLGANQI---------------------S----------NISP-LAGLTA 288 (466)
T ss_dssp TT--CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC---------------------C----------CCGG-GTTCTT
T ss_pred CC--CCEEECCCCccccchhhhcCCCCCEEECCCCcc---------------------C----------cccc-ccCCCc
Confidence 33 666666666666554433355555555555544 3 2233 667888
Q ss_pred CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE 487 (558)
Q Consensus 408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 487 (558)
|+.|++++|.+.+..+ +..+++|+.|++++|.+++..| + ..+++|++|++++|.+++. .
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~---------------~~l~~L~~L~l~~n~l~~~--~ 347 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V---------------SSLTKLQRLFFYNNKVSDV--S 347 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G---------------GGCTTCCEEECCSSCCCCC--G
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h---------------ccCccCCEeECCCCccCCc--h
Confidence 9999999999986544 7889999999999999886544 2 2388999999999998874 5
Q ss_pred hhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194 488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
.++.+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 78889999999999999987766 7889999999999998876
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-36 Score=311.30 Aligned_cols=366 Identities=23% Similarity=0.274 Sum_probs=298.7
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.++++|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +.++++|++|++++|.+.+. +. ++++++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~---~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID---GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSCCCC-CT---TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCE
T ss_pred ccccEEecCCCCCcc-Cc---chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccC-hh-hcCCCCCCE
Confidence 679999999998864 33 478899999999999999885 44 99999999999999999854 44 999999999
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhh
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVY 224 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~ 224 (558)
|++++|.++ .++. +.++++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+.. . +
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~-~-~--------------- 173 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK-P-L--------------- 173 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG-G-G---------------
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch-h-h---------------
Confidence 999999998 4543 7899999999999999985 44 58899999999996 4444332 2 2
Q ss_pred hcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCC
Q 048194 225 SCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQS 304 (558)
Q Consensus 225 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~ 304 (558)
..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|+++.++.+..++
T Consensus 174 ----~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~ 243 (466)
T 1o6v_A 174 ----ANLTTLERLDISSNKVSD-I--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLT 243 (466)
T ss_dssp ----TTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred ----ccCCCCCEEECcCCcCCC-C--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCC
Confidence 888999999999999873 3 347899999999999999987655 667899999999999999988888999
Q ss_pred CCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCc
Q 048194 305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNN 384 (558)
Q Consensus 305 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~ 384 (558)
+|+.|++++|.+.+..+ +..++. |++|++++|.+++..+...+++|+.|++++|++.+
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~--L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~------------------ 301 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTK--LTELKLGANQISNISPLAGLTALTNLELNENQLED------------------ 301 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTT--CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC------------------
T ss_pred CCCEEECCCCccccchh--hhcCCC--CCEEECCCCccCccccccCCCccCeEEcCCCcccC------------------
Confidence 99999999999976544 555555 99999999999987765558888888888877652
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhh
Q 048194 385 FTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL 464 (558)
Q Consensus 385 ~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~ 464 (558)
++. +..+++|+.|++++|++++..| +..+++|+.|++++|.+++. ..+
T Consensus 302 -------------~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l-------------- 349 (466)
T 1o6v_A 302 -------------ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSL-------------- 349 (466)
T ss_dssp -------------CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGG--------------
T ss_pred -------------chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhh--------------
Confidence 222 6677889999999999997665 78999999999999999864 122
Q ss_pred hhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc-------CCCCCCeecCCCCcCc
Q 048194 465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG-------NLKRLESLDLSMNNLS 530 (558)
Q Consensus 465 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-------~l~~L~~L~L~~N~l~ 530 (558)
..+++|+.|++++|.+++..| +..+++|+.|++++|++++ .|..+. .+.++..+.+..+.++
T Consensus 350 -~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~~~~~~~ip~~~~~~~~~~~~~~~is 418 (466)
T 1o6v_A 350 -ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALIAPATIS 418 (466)
T ss_dssp -TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBCCCSEEEEECCCBCTTSCBCCCSEES
T ss_pred -ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-CchhhcccceecccccccCCCeecCceec
Confidence 348999999999999998766 8999999999999999985 343321 1234445555555554
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-36 Score=308.20 Aligned_cols=365 Identities=19% Similarity=0.165 Sum_probs=284.1
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.++++|+++++.+.+. + .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+++ ++ ++++++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~---~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T---GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCC-T---TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred CCCCEEEccCCCcccC-h---hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCE
Confidence 7899999999999864 3 489999999999999999884 4 8899999999999999996 44 889999999
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhh
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVY 224 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~ 224 (558)
|++++|.+++ ++ ++.+++|++|++++|.+++ ++ ++.+++|++|++++|...+.++ +
T Consensus 111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~--~--------------- 166 (457)
T 3bz5_A 111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--V--------------- 166 (457)
T ss_dssp EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC--C---------------
T ss_pred EECCCCcCCe-ec---CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc--c---------------
Confidence 9999999984 43 7899999999999999986 33 8899999999999997665553 2
Q ss_pred hcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCC
Q 048194 225 SCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQS 304 (558)
Q Consensus 225 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~ 304 (558)
..+++|++|++++|.+++ ++ +..+++|++|++++|.+++. . +..+++|+.|++++|+++.+| +..++
T Consensus 167 ----~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~-l~~l~~L~~L~Ls~N~l~~ip-~~~l~ 233 (457)
T 3bz5_A 167 ----TPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---D-LNQNIQLTFLDCSSNKLTEID-VTPLT 233 (457)
T ss_dssp ----TTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCCC-CTTCT
T ss_pred ----ccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---c-cccCCCCCEEECcCCcccccC-ccccC
Confidence 788999999999999984 54 77899999999999999875 2 778999999999999999998 88999
Q ss_pred CCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCC-CCCCCcEEEccCC
Q 048194 305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQ-LPNNPIYIDFSNN 383 (558)
Q Consensus 305 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~l~~n 383 (558)
+|++|++++|++++..+.. ++ +|+.|++++|.+ +.+++++|.+.+.+|. .+.+|+.|++++|
T Consensus 234 ~L~~L~l~~N~l~~~~~~~---l~--~L~~L~l~~n~L------------~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDVST---LS--KLTTLHCIQTDL------------LEIDLTHNTQLIYFQAEGCRKIKELDVTHN 296 (457)
T ss_dssp TCSEEECCSSCCSCCCCTT---CT--TCCEEECTTCCC------------SCCCCTTCTTCCEEECTTCTTCCCCCCTTC
T ss_pred CCCEEEeeCCcCCCcCHHH---CC--CCCEEeccCCCC------------CEEECCCCccCCcccccccccCCEEECCCC
Confidence 9999999999998754332 33 377777766543 3445555554444442 2345566666666
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchh
Q 048194 384 NFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIK 463 (558)
Q Consensus 384 ~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~ 463 (558)
...+.+|.. ...--.-.+..+++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 297 ~~l~~l~~~-~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~------------------- 353 (457)
T 3bz5_A 297 TQLYLLDCQ-AAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD------------------- 353 (457)
T ss_dssp TTCCEEECT-TCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------------------
T ss_pred cccceeccC-CCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------------------
Confidence 555444421 0000111255667899999999999974 3 8899999999999999985
Q ss_pred hhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCC-CCCCeecCCC
Q 048194 464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNL-KRLESLDLSM 526 (558)
Q Consensus 464 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~ 526 (558)
++.|..|++++|.+.|. +.+..|+.+++++|+++|.+|..+... .++......+
T Consensus 354 ----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~ 408 (457)
T 3bz5_A 354 ----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408 (457)
T ss_dssp ----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESS
T ss_pred ----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCC
Confidence 45667778888888874 456778889999999999888765433 3343344443
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-34 Score=291.22 Aligned_cols=261 Identities=19% Similarity=0.202 Sum_probs=190.0
Q ss_pred ccCCCCCCCCCCC-ccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEE
Q 048194 43 KLMQWRQSTDCCD-WSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYL 121 (558)
Q Consensus 43 ~~~~w~~~~~~c~-~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 121 (558)
.++.|..+.+||. |.+..|.... +.+........... .-..++++++|+++++.+... .+..+..+++|++|
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~----~~i~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L 74 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYD----VHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELL 74 (390)
T ss_dssp -----CCEECBCC------EEEES----CEECSSCCCCEESC--SSGGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEE
T ss_pred CcCCCCCccceehhhhhhccceee----eeeecccccccccc--cccccCCceEEEecCCchhhC-ChhHhcccccCcEE
Confidence 4577888888876 4444443111 11122111111111 234578999999999988774 44557899999999
Q ss_pred eCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccC
Q 048194 122 NLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQF 201 (558)
Q Consensus 122 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 201 (558)
++++|.+++..+..|..+++|++|++++|.+++..+. .++++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence 9999999977777899999999999999999854444 689999999999999999844444468899999999999999
Q ss_pred CCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCC
Q 048194 202 GGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS 281 (558)
Q Consensus 202 ~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 281 (558)
.+..+..+ ..+++|++|++++|.++ .++ +..+++|++|++++|.+.+. ...
T Consensus 154 ~~~~~~~~-------------------~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~n~l~~~------~~~ 204 (390)
T 3o6n_A 154 ERIEDDTF-------------------QATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLSTL------AIP 204 (390)
T ss_dssp CBCCTTTT-------------------SSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCSSCCSEE------ECC
T ss_pred CccChhhc-------------------cCCCCCCEEECCCCcCC-ccc---cccccccceeeccccccccc------CCC
Confidence 87767655 78899999999999987 333 56789999999999988743 345
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCcccccc
Q 048194 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF 345 (558)
Q Consensus 282 ~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 345 (558)
+.|+.|++++|.++.+|. ...++|+.|++++|.+++. ..+..++. |++|++++|.+++.
T Consensus 205 ~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~--~~l~~l~~--L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDT--AWLLNYPG--LVEVDLSYNELEKI 263 (390)
T ss_dssp SSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCC--GGGGGCTT--CSEEECCSSCCCEE
T ss_pred CcceEEECCCCeeeeccc-cccccccEEECCCCCCccc--HHHcCCCC--ccEEECCCCcCCCc
Confidence 689999999999998875 3357899999999999753 44554444 66666666665544
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=297.48 Aligned_cols=301 Identities=22% Similarity=0.154 Sum_probs=180.3
Q ss_pred CCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhh
Q 048194 141 RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQI 220 (558)
Q Consensus 141 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li 220 (558)
++++|++++|.+++..+. .+.++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..+
T Consensus 33 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------- 100 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF----------- 100 (477)
T ss_dssp TCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS-----------
T ss_pred CCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc-----------
Confidence 344444444444421121 33444444444444444443444444445555555555554443322222
Q ss_pred chhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-
Q 048194 221 KRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN- 299 (558)
Q Consensus 221 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~- 299 (558)
..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+.. +..+++|+.|++++|+++.++.
T Consensus 101 --------~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 101 --------TGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp --------TTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCCHH
T ss_pred --------cCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccChh
Confidence 34444444444444444 222233445555555555555554433333 4445555555555555554443
Q ss_pred -CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEE
Q 048194 300 -LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYI 378 (558)
Q Consensus 300 -~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l 378 (558)
+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|...
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~------------------------~l~~L~~L~l~~~~~~------------- 213 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFK------------------------RLYRLKVLEISHWPYL------------- 213 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSC------------------------SCTTCCEEEEECCTTC-------------
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcc------------------------cCcccceeeCCCCccc-------------
Confidence 44555555555555554432222221 1444555555444433
Q ss_pred EccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeecc
Q 048194 379 DFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIK 458 (558)
Q Consensus 379 ~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~ 458 (558)
+.+|.......+|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 214 -----------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 270 (477)
T 2id5_A 214 -----------------DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE------ 270 (477)
T ss_dssp -----------------CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT------
T ss_pred -----------------cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc------
Confidence 133333444457999999999998655567899999999999999998766655543
Q ss_pred ccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCccc
Q 048194 459 GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA 532 (558)
Q Consensus 459 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 532 (558)
+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++...
T Consensus 271 ---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 ---------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp ---------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ---------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 88999999999999988888999999999999999999976677788899999999999998754
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=296.46 Aligned_cols=331 Identities=17% Similarity=0.152 Sum_probs=241.5
Q ss_pred CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEE
Q 048194 91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA 170 (558)
Q Consensus 91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 170 (558)
+++++|+|++|.+.+. .+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .++...+.++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 5899999999999886 6788999999999999999999888889999999999999999998 5544357889999999
Q ss_pred EccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccCh
Q 048194 171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQL 250 (558)
Q Consensus 171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 250 (558)
++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++ .++.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------~~l~~L~~L~l~~n~l~-~~~~ 169 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-------------------SGLNSLEQLTLEKCNLT-SIPT 169 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS-------------------TTCTTCCEEEEESCCCS-SCCH
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhc-------------------cCCCCCCEEECCCCcCc-ccCh
Confidence 999999988888888999999999999999887666655 77888999999999887 5666
Q ss_pred hhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC-CCCCCCCCEEecCCCcccccCChhHHhhc
Q 048194 251 DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVS 328 (558)
Q Consensus 251 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 328 (558)
..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|... .+|. .....+|++|++++|.+++..+..+..
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-- 246 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH-- 246 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT--
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC--
Confidence 77888888888888888887655444 666666666666666432 4444 333345666666666554222122222
Q ss_pred cccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCC
Q 048194 329 VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLL 408 (558)
Q Consensus 329 ~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L 408 (558)
+++|+.|++++|.+.+ ..+..+..+++|
T Consensus 247 ----------------------l~~L~~L~Ls~n~l~~------------------------------~~~~~~~~l~~L 274 (477)
T 2id5_A 247 ----------------------LVYLRFLNLSYNPIST------------------------------IEGSMLHELLRL 274 (477)
T ss_dssp ----------------------CTTCCEEECCSSCCCE------------------------------ECTTSCTTCTTC
T ss_pred ----------------------ccccCeeECCCCcCCc------------------------------cChhhccccccC
Confidence 4445555555554431 233456777889
Q ss_pred CEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchh
Q 048194 409 QTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILED 488 (558)
Q Consensus 409 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 488 (558)
+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+.. +++|++|++++|.+.......
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---------------l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS---------------VGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC---------------GGGCCEEECCSSCEECSGGGH
T ss_pred CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC---------------CcccCEEEccCCCccCccchH
Confidence 99999999998888888889999999999999888654444433 788888999888887532211
Q ss_pred hcccCCCCeeeCcCCcCccccccccc
Q 048194 489 VGLLKSLYGLNLSHNALTGSIPSSFG 514 (558)
Q Consensus 489 ~~~l~~L~~L~l~~n~l~~~~~~~l~ 514 (558)
.-...+..+.+.++......|..+.
T Consensus 340 -~~~~~~~~~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 340 -WVFRRRWRLNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp -HHHTTTTSSCCTTCCCBEEESGGGT
T ss_pred -hHHhhhhccccCccCceeCCchHHc
Confidence 1123334455666666555555443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.5e-34 Score=304.59 Aligned_cols=325 Identities=21% Similarity=0.221 Sum_probs=223.5
Q ss_pred ccCCCCCCCCCCC----ccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCC
Q 048194 43 KLMQWRQSTDCCD----WSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSL 118 (558)
Q Consensus 43 ~~~~w~~~~~~c~----~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 118 (558)
.+..|.++.+||. |.++.|.. .++-......... .-..+.+++.+++++|.+... .+..+.++++|
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~-----~i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L 77 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDV-----HIDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQV 77 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSC-----EECSSCCCCEESC----SSGGGCCCSEEEESSCEESEE-CTHHHHHCCCC
T ss_pred cccCCCCCCcCcccCcCceeEecCc-----eecccccccccCc----ccccCCCceEEEeeCCCCCCc-CHHHHccCCCC
Confidence 6788988888875 55554431 1111111111111 123467888888888887764 45567888888
Q ss_pred CEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCcc
Q 048194 119 TYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLAN 198 (558)
Q Consensus 119 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 198 (558)
++|++++|.+++..|..|+.+++|++|+|++|.+++..+. .++++++|++|++++|.+++..+..+..+++|++|++++
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 8888888888877777888888888888888888854444 578888888888888888854445567888888888888
Q ss_pred ccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCccc
Q 048194 199 NQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNY 278 (558)
Q Consensus 199 n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 278 (558)
|.+++..|..+ ..+++|++|++++|.+++ ++ +..+++|+.|++++|.+.+ +
T Consensus 157 N~l~~~~~~~~-------------------~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~------l 207 (597)
T 3oja_B 157 NNLERIEDDTF-------------------QATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLST------L 207 (597)
T ss_dssp SCCCBCCTTTT-------------------TTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSE------E
T ss_pred CcCCCCChhhh-------------------hcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCcccc------c
Confidence 88887776655 778888888888888873 33 4567888888888887764 2
Q ss_pred CCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCE
Q 048194 279 SFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRF 356 (558)
Q Consensus 279 ~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~ 356 (558)
...+.|+.|++++|.++.++.. ..++|+.|++++|.+++ +.++..++. |++|++++|.+.+..+. ..+++|+.
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~--~~~l~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTD--TAWLLNYPG--LVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCC--CGGGGGCTT--CSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cCCchhheeeccCCcccccccc-cCCCCCEEECCCCCCCC--ChhhccCCC--CCEEECCCCccCCCCHHHhcCccCCCE
Confidence 3456788888888888877651 23678888888888875 355665555 88888888888877554 34788888
Q ss_pred EEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEE
Q 048194 357 IDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN 436 (558)
Q Consensus 357 L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 436 (558)
|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus 283 L~Ls~N~l~~-------------------------------l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 283 LYISNNRLVA-------------------------------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp EECTTSCCCE-------------------------------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred EECCCCCCCC-------------------------------CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 8888887763 2333344455666666666555 4444555556666666
Q ss_pred CCCCcCcc
Q 048194 437 LGNNQFSD 444 (558)
Q Consensus 437 l~~n~i~~ 444 (558)
+++|.+++
T Consensus 331 L~~N~l~~ 338 (597)
T 3oja_B 331 LDHNSIVT 338 (597)
T ss_dssp CCSSCCCC
T ss_pred CCCCCCCC
Confidence 66665543
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-33 Score=284.05 Aligned_cols=313 Identities=19% Similarity=0.183 Sum_probs=196.9
Q ss_pred CCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEE
Q 048194 115 ISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQL 194 (558)
Q Consensus 115 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 194 (558)
++++++|+++++.++...+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46677777777777643334456677777777777776632222 46666666666666666665555556666666666
Q ss_pred eCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCC
Q 048194 195 QLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES 274 (558)
Q Consensus 195 ~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 274 (558)
++++|.++...+..+ ..+++|++|++++|.+. .++...+..+++|++|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~-------------------~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~---- 178 (390)
T 3o6n_A 123 VLERNDLSSLPRGIF-------------------HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT---- 178 (390)
T ss_dssp ECCSSCCCCCCTTTT-------------------TTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCS----
T ss_pred ECCCCccCcCCHHHh-------------------cCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCC----
Confidence 666666653322222 44555555555555554 333334445555555555555444
Q ss_pred CcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCcc
Q 048194 275 SRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPAL 354 (558)
Q Consensus 275 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L 354 (558)
.++ +..+++|+.|++++|.+.+... . .++++|++++|.+...
T Consensus 179 ---------------------~~~-~~~l~~L~~L~l~~n~l~~~~~-----~--~~L~~L~l~~n~l~~~--------- 220 (390)
T 3o6n_A 179 ---------------------HVD-LSLIPSLFHANVSYNLLSTLAI-----P--IAVEELDASHNSINVV--------- 220 (390)
T ss_dssp ---------------------BCC-GGGCTTCSEEECCSSCCSEEEC-----C--SSCSEEECCSSCCCEE---------
T ss_pred ---------------------ccc-cccccccceeecccccccccCC-----C--CcceEEECCCCeeeec---------
Confidence 322 2333444444444444432100 0 1144444444433332
Q ss_pred CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194 355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV 434 (558)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 434 (558)
....+.+|+.|++++|.+++ . ..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 221 -------------~~~~~~~L~~L~l~~n~l~~----------~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 221 -------------RGPVNVELTILKLQHNNLTD----------T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp -------------ECCCCSSCCEEECCSSCCCC----------C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred -------------cccccccccEEECCCCCCcc----------c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 22223344455555554441 1 35677888999999999999888899999999999
Q ss_pred EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194 435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG 514 (558)
Q Consensus 435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 514 (558)
|++++|.+++. |..+. .+++|++|++++|.++. +|..++.+++|++|++++|+++. ++ +.
T Consensus 277 L~L~~n~l~~~-~~~~~---------------~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~-~~--~~ 336 (390)
T 3o6n_A 277 LYISNNRLVAL-NLYGQ---------------PIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT-LK--LS 336 (390)
T ss_dssp EECCSSCCCEE-ECSSS---------------CCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC-CC--CC
T ss_pred EECCCCcCccc-CcccC---------------CCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccce-eC--ch
Confidence 99999998753 33322 27899999999999984 67778889999999999999984 44 67
Q ss_pred CCCCCCeecCCCCcCcccch
Q 048194 515 NLKRLESLDLSMNNLSRAIP 534 (558)
Q Consensus 515 ~l~~L~~L~L~~N~l~~~~~ 534 (558)
.+++|+.|++++|++.....
T Consensus 337 ~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp TTCCCSEEECCSSCEEHHHH
T ss_pred hhccCCEEEcCCCCccchhH
Confidence 88999999999999976433
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.8e-33 Score=275.07 Aligned_cols=307 Identities=23% Similarity=0.297 Sum_probs=187.6
Q ss_pred ccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccc
Q 048194 136 ISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSA 215 (558)
Q Consensus 136 l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 215 (558)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~~-~------ 106 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-ISA-L------ 106 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-G------
T ss_pred chhcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-chH-H------
Confidence 345667777777777766 444 25666777777777776663 333 6666777777777766653 222 2
Q ss_pred hhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC
Q 048194 216 LDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR 295 (558)
Q Consensus 216 l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 295 (558)
..+++|++|++++|.+. .++. +..+++|++|++++|......+. +..+++|+.|++++|.++
T Consensus 107 -------------~~l~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 107 -------------QNLTNLRELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp -------------TTCTTCSEEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred -------------cCCCcCCEEECcCCccc-Cchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC
Confidence 55666666666666665 2221 55566666666666543322211 444555555555555555
Q ss_pred CCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCC
Q 048194 296 EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP 375 (558)
Q Consensus 296 ~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 375 (558)
.++.+..+++|++|++++|.+ .+......+++|+.+++++|.+.+
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l--------------------------~~~~~~~~l~~L~~L~l~~n~l~~--------- 213 (347)
T 4fmz_A 169 DVTPIANLTDLYSLSLNYNQI--------------------------EDISPLASLTSLHYFTAYVNQITD--------- 213 (347)
T ss_dssp CCGGGGGCTTCSEEECTTSCC--------------------------CCCGGGGGCTTCCEEECCSSCCCC---------
T ss_pred CchhhccCCCCCEEEccCCcc--------------------------cccccccCCCccceeecccCCCCC---------
Confidence 444444445555555555544 333222224445555554444331
Q ss_pred cEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCcee
Q 048194 376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPI 455 (558)
Q Consensus 376 ~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~ 455 (558)
++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .
T Consensus 214 ----------------------~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~------ 260 (347)
T 4fmz_A 214 ----------------------ITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-A------ 260 (347)
T ss_dssp ----------------------CGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-G------
T ss_pred ----------------------Cch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-h------
Confidence 111 4455667777777777764333 66777777777777776542 1 1
Q ss_pred eccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchh
Q 048194 456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS 535 (558)
Q Consensus 456 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 535 (558)
...+++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus 261 ---------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~- 328 (347)
T 4fmz_A 261 ---------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328 (347)
T ss_dssp ---------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred ---------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence 22367777777777777753 457788888888888888887778888888888888888888886555
Q ss_pred hhcCCCCCCEEeCcCCcCe
Q 048194 536 QLASLYFLSYLNLSYNQLE 554 (558)
Q Consensus 536 ~~~~l~~L~~L~l~~n~l~ 554 (558)
+..+++|++|++++|+|+
T Consensus 329 -~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 -LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GGGCTTCSEESSSCC---
T ss_pred -hhhhhccceeehhhhccc
Confidence 777888888888888876
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-32 Score=272.27 Aligned_cols=308 Identities=22% Similarity=0.300 Sum_probs=239.3
Q ss_pred hhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCC
Q 048194 111 KLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPM 190 (558)
Q Consensus 111 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 190 (558)
.+..+++|++|+++++.+. .++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ + ..+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTT
T ss_pred cchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCc
Confidence 3567899999999999998 455 4889999999999999998 5543 8899999999999999984 4 46899999
Q ss_pred CCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCccc
Q 048194 191 LQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLA 270 (558)
Q Consensus 191 L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 270 (558)
|++|++++|.+.+..+ + ..+++|++|++++|...+.++ .+..+++|++|++++|.+.
T Consensus 112 L~~L~l~~n~i~~~~~--~-------------------~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--L-------------------ANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp CSEEECTTSCCCCCGG--G-------------------TTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred CCEEECcCCcccCchh--h-------------------ccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcC
Confidence 9999999999985433 3 789999999999997654443 4889999999999999987
Q ss_pred ccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCC
Q 048194 271 VDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS 350 (558)
Q Consensus 271 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 350 (558)
+..+ +..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+..+ +..++. |++|++++|.+++.
T Consensus 169 ~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~--L~~L~l~~n~l~~~----- 236 (347)
T 4fmz_A 169 DVTP---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTR--LNSLKIGNNKITDL----- 236 (347)
T ss_dssp CCGG---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTT--CCEEECCSSCCCCC-----
T ss_pred Cchh---hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCc--CCEEEccCCccCCC-----
Confidence 6544 67899999999999999988888888999999999998865433 333222 44444444444322
Q ss_pred CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCC
Q 048194 351 IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCK 430 (558)
Q Consensus 351 ~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 430 (558)
+. +..+++|++|++++|.+++. +.+..++
T Consensus 237 ------------------------------------------------~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~ 265 (347)
T 4fmz_A 237 ------------------------------------------------SP-LANLSQLTWLEIGTNQISDI--NAVKDLT 265 (347)
T ss_dssp ------------------------------------------------GG-GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred ------------------------------------------------cc-hhcCCCCCEEECCCCccCCC--hhHhcCC
Confidence 22 45556677777777777642 3567777
Q ss_pred CCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccc
Q 048194 431 MLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIP 510 (558)
Q Consensus 431 ~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 510 (558)
+|++|++++|.+++. + .+..+++|++|++++|.+++..+..++.+++|++|++++|++++..|
T Consensus 266 ~L~~L~l~~n~l~~~-~----------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI-S----------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCCEEECCSSCCCCC-G----------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CcCEEEccCCccCCC-h----------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 888888888777642 1 12347788888888888887778888899999999999999986555
Q ss_pred ccccCCCCCCeecCCCCcCc
Q 048194 511 SSFGNLKRLESLDLSMNNLS 530 (558)
Q Consensus 511 ~~l~~l~~L~~L~L~~N~l~ 530 (558)
+..+++|+.|++++|+++
T Consensus 329 --~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 --LASLSKMDSADFANQVIK 346 (347)
T ss_dssp --GGGCTTCSEESSSCC---
T ss_pred --hhhhhccceeehhhhccc
Confidence 788999999999999875
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.1e-33 Score=294.10 Aligned_cols=313 Identities=19% Similarity=0.183 Sum_probs=207.8
Q ss_pred CCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEE
Q 048194 115 ISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQL 194 (558)
Q Consensus 115 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 194 (558)
+++++.+++++|.+....+..+.++++|++|++++|.+.+..+. .++.+++|++|++++|.+.+..|..++.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 56778888888887755555567788888888888877743333 56777777777777777776666666777777777
Q ss_pred eCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCC
Q 048194 195 QLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES 274 (558)
Q Consensus 195 ~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 274 (558)
++++|.+++..+..+ ..+++|++|++++|.++ .+++..+..+++|++|++++|.+.+
T Consensus 129 ~L~~n~l~~l~~~~~-------------------~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~--- 185 (597)
T 3oja_B 129 VLERNDLSSLPRGIF-------------------HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH--- 185 (597)
T ss_dssp ECCSSCCCCCCTTTT-------------------TTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSB---
T ss_pred EeeCCCCCCCCHHHh-------------------ccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCC---
Confidence 777777764433333 55566666666666665 3333445555555555555555543
Q ss_pred CcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCcc
Q 048194 275 SRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPAL 354 (558)
Q Consensus 275 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L 354 (558)
++ +..+++|+.|++++|.+.+... . ..|+.|++++|.+
T Consensus 186 ----------------------~~-~~~l~~L~~L~l~~n~l~~l~~-----~--~~L~~L~ls~n~l------------ 223 (597)
T 3oja_B 186 ----------------------VD-LSLIPSLFHANVSYNLLSTLAI-----P--IAVEELDASHNSI------------ 223 (597)
T ss_dssp ----------------------CC-GGGCTTCSEEECCSSCCSEEEC-----C--TTCSEEECCSSCC------------
T ss_pred ----------------------cC-hhhhhhhhhhhcccCccccccC-----C--chhheeeccCCcc------------
Confidence 22 2233444444444444432100 0 0133333333333
Q ss_pred CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194 355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV 434 (558)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 434 (558)
....+..+.+|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 224 ----------~~~~~~~~~~L~~L~L~~n~l~~-----------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 224 ----------NVVRGPVNVELTILKLQHNNLTD-----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp ----------CEEECSCCSCCCEEECCSSCCCC-----------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ----------cccccccCCCCCEEECCCCCCCC-----------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 32222233445555555555552 245777888999999999999888999999999999
Q ss_pred EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194 435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG 514 (558)
Q Consensus 435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 514 (558)
|++++|.+++. |..+. .+++|+.|+|++|.++ .+|..++.+++|+.|++++|.+++ +| +.
T Consensus 283 L~Ls~N~l~~l-~~~~~---------------~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~ 342 (597)
T 3oja_B 283 LYISNNRLVAL-NLYGQ---------------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LS 342 (597)
T ss_dssp EECTTSCCCEE-ECSSS---------------CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CC
T ss_pred EECCCCCCCCC-Ccccc---------------cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hh
Confidence 99999999863 43332 2789999999999998 467788899999999999999984 33 67
Q ss_pred CCCCCCeecCCCCcCcccch
Q 048194 515 NLKRLESLDLSMNNLSRAIP 534 (558)
Q Consensus 515 ~l~~L~~L~L~~N~l~~~~~ 534 (558)
.+++|+.|++++|++.+...
T Consensus 343 ~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 343 THHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp TTCCCSEEECCSSCEEHHHH
T ss_pred hcCCCCEEEeeCCCCCChhH
Confidence 88899999999999876433
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.4e-35 Score=304.65 Aligned_cols=213 Identities=18% Similarity=0.236 Sum_probs=100.9
Q ss_pred CCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCcc----CCChhccCCCCCcEEecccccccccccchhhcCCC--
Q 048194 92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAG----QIPVQISRMARLVALDFSFNQFSGSISSIRWEHLL-- 165 (558)
Q Consensus 92 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-- 165 (558)
+|++|++++|.+++......+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+......++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 344555555544433222234445555555555555442 12344444555555555555554322111122233
Q ss_pred --CccEEEccCCccCc----cCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEc
Q 048194 166 --NLVCAVLSDNSLDG----SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLL 239 (558)
Q Consensus 166 --~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l 239 (558)
+|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+.. ......++|++|++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--------------~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--------------GLLDPQCRLEKLQL 149 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH--------------HHTSTTCCCCEEEC
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH--------------HHhcCCCcceEEEC
Confidence 45555555555542 33555556666666666666654332221100 00022345666666
Q ss_pred ccccCCcccC---hhhhcCCCCCCEEEccCCcccccCCCccc----CCCCCCCEEecCCCCCCC-----CCC-CCCCCCC
Q 048194 240 SSNNLNGTVQ---LDKILSLGNLAKLDLSYNSLAVDESSRNY----SFSPMLELLNLASCKLRE-----IPN-LKNQSQL 306 (558)
Q Consensus 240 ~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~l~~n~l~~-----l~~-~~~~~~L 306 (558)
++|.+++... ...+..+++|++|++++|.+.+..+.... ...++|+.|++++|.++. ++. +..+++|
T Consensus 150 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 6666553211 12344556666666666665533222100 123455666666665553 233 4455666
Q ss_pred CEEecCCCcccc
Q 048194 307 QYLYLSENQISR 318 (558)
Q Consensus 307 ~~L~l~~n~l~~ 318 (558)
++|++++|.+.+
T Consensus 230 ~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 230 RELALGSNKLGD 241 (461)
T ss_dssp CEEECCSSBCHH
T ss_pred cEEeccCCcCCh
Confidence 666666666543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.3e-29 Score=247.71 Aligned_cols=176 Identities=22% Similarity=0.338 Sum_probs=99.1
Q ss_pred CCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeC
Q 048194 117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQL 196 (558)
Q Consensus 117 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 196 (558)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+. .++++++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3445555555544 3443332 3455555555555522222 3555555555555555555555666666666777777
Q ss_pred ccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccc--cCC
Q 048194 197 ANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAV--DES 274 (558)
Q Consensus 197 ~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~ 274 (558)
++|.++ .+|.. ..++|++|++++|.+. .++...+..+++|++|++++|.+.. ..+
T Consensus 108 s~n~l~-~l~~~---------------------~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 108 SKNQLK-ELPEK---------------------MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp CSSCCS-BCCSS---------------------CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred CCCcCC-ccChh---------------------hcccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 766665 33332 1256777777777766 4555667777777777777777653 222
Q ss_pred CcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCCh
Q 048194 275 SRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPN 322 (558)
Q Consensus 275 ~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~ 322 (558)
.. +..+++|+.|++++|.++.+|. +. ++|++|++++|++.+..+.
T Consensus 165 ~~-~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 165 GA-FQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp TG-GGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTG
T ss_pred hh-ccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHH
Confidence 22 5566666666666666666654 21 4555555555555443333
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.1e-29 Score=247.91 Aligned_cols=287 Identities=20% Similarity=0.237 Sum_probs=220.8
Q ss_pred CCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCc
Q 048194 189 PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNS 268 (558)
Q Consensus 189 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 268 (558)
.+++.++++++.++ .+|.. -.+.++.|++++|.++ .++...+..+++|++|++++|.
T Consensus 31 c~l~~l~~~~~~l~-~lp~~---------------------~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~ 87 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKD---------------------LPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87 (330)
T ss_dssp EETTEEECTTSCCC-SCCCS---------------------CCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSC
T ss_pred CCCeEEEecCCCcc-ccCcc---------------------CCCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCc
Confidence 36888888888877 45542 2367899999999998 5665678899999999999999
Q ss_pred ccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCcccccc--
Q 048194 269 LAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF-- 345 (558)
Q Consensus 269 l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-- 345 (558)
+++..+.. +..+++|++|++++|+++.+|. +. ++|++|++++|.+.+..+..+..+.. |++|++++|.+...
T Consensus 88 l~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 88 ISKISPGA-FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ--MIVVELGTNPLKSSGI 162 (330)
T ss_dssp CCCBCTTT-TTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT--CCEEECCSSCCCGGGB
T ss_pred CCeeCHHH-hcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCcc--ccEEECCCCcCCccCc
Confidence 98776666 8889999999999999998887 33 78999999999998666666766665 88888888887642
Q ss_pred CCC--CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCC
Q 048194 346 QAP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVP 423 (558)
Q Consensus 346 ~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~ 423 (558)
.+. ..+++|+.|++++|.++ .+|..+. ++|++|++++|.+++..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~-------------------------------~l~~~~~--~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNIT-------------------------------TIPQGLP--PSLTELHLDGNKITKVDA 209 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-------------------------------SCCSSCC--TTCSEEECTTSCCCEECT
T ss_pred ChhhccCCCCcCEEECCCCccc-------------------------------cCCcccc--ccCCEEECCCCcCCccCH
Confidence 221 22666666666666654 3343332 578888888888887778
Q ss_pred cccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCC
Q 048194 424 KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHN 503 (558)
Q Consensus 424 ~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 503 (558)
..+..+++|++|++++|.+++..+..+.. +++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLAN---------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGG---------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccC---------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence 88888888999999988888766555433 788899999999888 56778889999999999999
Q ss_pred cCcccccccccC------CCCCCeecCCCCcCcc--cchhhhcCCCCCCEEeCcCCc
Q 048194 504 ALTGSIPSSFGN------LKRLESLDLSMNNLSR--AIPSQLASLYFLSYLNLSYNQ 552 (558)
Q Consensus 504 ~l~~~~~~~l~~------l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~n~ 552 (558)
++++..+..|.. .+.++.|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 998666666643 3788999999999863 566888889999999999985
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.8e-31 Score=261.67 Aligned_cols=280 Identities=16% Similarity=0.199 Sum_probs=172.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCCCcccCCC----CCCCCCCCccceEeCC---------CCCEEEEEcCCCCccccccC
Q 048194 17 GQCQSDQQTLLLQLKSSLTFDPSSSVKLMQW----RQSTDCCDWSGVDCDE---------AGHVIGLDLSTESISGGIEN 83 (558)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w----~~~~~~c~~~~~~c~~---------~~~v~~L~l~~~~~~~~~~~ 83 (558)
.++..+|++||++||+.+..++.. ....| ....++|.|.|+.|.. .++|+.|+++++.+. .+|.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~--~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNR--WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTT--HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred cccCchHHHHHHHHHHhccCCchh--hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 345668999999999988655532 56788 4578899999999942 156777777777666 4444
Q ss_pred cccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcC
Q 048194 84 AAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEH 163 (558)
Q Consensus 84 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 163 (558)
.+..+++|++|++++|.+. . +|..++++++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|. .+..
T Consensus 99 --~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~ 172 (328)
T 4fcg_A 99 --QAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE-PLAS 172 (328)
T ss_dssp --CGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-CSEE
T ss_pred --hhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-hHhh
Confidence 4666777777777777766 3 6666677777777777777766 6666677777777777777666655543 1221
Q ss_pred CCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEccccc
Q 048194 164 LLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNN 243 (558)
Q Consensus 164 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~ 243 (558)
. ..+..+..+++|++|++++|.++ .+|..+ ..+++|++|++++|.
T Consensus 173 ------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-------------------~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 173 ------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASI-------------------ANLQNLKSLKIRNSP 217 (328)
T ss_dssp ------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGG-------------------GGCTTCCEEEEESSC
T ss_pred ------c---------cchhhhccCCCCCEEECcCCCcC-cchHhh-------------------cCCCCCCEEEccCCC
Confidence 0 00111223555555555555554 334333 444555555555555
Q ss_pred CCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC-CCCCCCCCEEecCCCcccccCC
Q 048194 244 LNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIP 321 (558)
Q Consensus 244 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~~ 321 (558)
++ .++. .+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+. .+|. +..+++|++|++++|++.+.+|
T Consensus 218 l~-~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 218 LS-ALGP-AIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CC-CCCG-GGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CC-cCch-hhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 54 2332 3455555555555555555554444 555666666666665433 5555 6677777777777777777777
Q ss_pred hhHHhhccccceEEEcCCcccccc
Q 048194 322 NWIWRVSVVGLHCLNLSHNFLVGF 345 (558)
Q Consensus 322 ~~~~~~~~~~L~~L~ls~n~l~~~ 345 (558)
..+..++. ++.+++..+.+...
T Consensus 295 ~~l~~L~~--L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 295 SLIAQLPA--NCIILVPPHLQAQL 316 (328)
T ss_dssp GGGGGSCT--TCEEECCGGGSCC-
T ss_pred HHHhhccC--ceEEeCCHHHHHHH
Confidence 77777666 77777776665543
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1e-29 Score=250.38 Aligned_cols=264 Identities=21% Similarity=0.256 Sum_probs=156.6
Q ss_pred CCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEec
Q 048194 233 KLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYL 311 (558)
Q Consensus 233 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l 311 (558)
+++.|++++|.+. .++...+..+++|++|++++|.+++..+.. +..+++|++|++++|+++.+|. +. ++|++|++
T Consensus 55 ~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 4444555554444 333334445555555555555554433333 4455555555555555555554 22 45555555
Q ss_pred CCCcccccCChhHHhhccccceEEEcCCcccccc--CCC-CC-CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccc
Q 048194 312 SENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF--QAP-YS-IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTS 387 (558)
Q Consensus 312 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~-~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~ 387 (558)
++|++.+..+..+..++. |++|++++|.++.. .+. .. + +|+.|++++|+++
T Consensus 131 ~~n~i~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~---------------------- 185 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRN--MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT---------------------- 185 (332)
T ss_dssp CSSCCCCCCSGGGSSCSS--CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS----------------------
T ss_pred CCCccCccCHhHhCCCcc--CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC----------------------
Confidence 555554333333433333 45555554444321 111 11 2 4444444444433
Q ss_pred cCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhh
Q 048194 388 SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467 (558)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~ 467 (558)
.+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .
T Consensus 186 ---------~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~---------------~ 239 (332)
T 2ft3_A 186 ---------GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS---------------F 239 (332)
T ss_dssp ---------SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG---------------G
T ss_pred ---------ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh---------------C
Confidence 2333332 4677777777777766667777777777788877777765554443 2
Q ss_pred hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccC------CCCCCeecCCCCcCc--ccchhhhcC
Q 048194 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGN------LKRLESLDLSMNNLS--RAIPSQLAS 539 (558)
Q Consensus 468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~L~~N~l~--~~~~~~~~~ 539 (558)
+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. ...|+.|++++|++. ...|..|..
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 677888888888777 56677888889999999999888666666654 367889999999887 567788888
Q ss_pred CCCCCEEeCcCCc
Q 048194 540 LYFLSYLNLSYNQ 552 (558)
Q Consensus 540 l~~L~~L~l~~n~ 552 (558)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 9999999999885
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3e-33 Score=288.91 Aligned_cols=384 Identities=19% Similarity=0.137 Sum_probs=217.7
Q ss_pred CCCCEEeCcCCcCccCCChh-ccCCCCCcEEeccccccccc----ccchhhcCCCCccEEEccCCccCccCCcccc-CCC
Q 048194 116 SSLTYLNLSDAGFAGQIPVQ-ISRMARLVALDFSFNQFSGS----ISSIRWEHLLNLVCAVLSDNSLDGSIPRSMF-EFP 189 (558)
Q Consensus 116 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~ 189 (558)
++|++|++++|.++...... +..+++|++|++++|.+++. ++. .+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45667777777665433222 55666777777777766532 122 355566666666666666543332222 233
Q ss_pred ----CCCEEeCccccCCCC----CCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChh----hhcCCC
Q 048194 190 ----MLQQLQLANNQFGGS----IPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLD----KILSLG 257 (558)
Q Consensus 190 ----~L~~L~l~~n~~~~~----~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~~l~ 257 (558)
+|++|++++|.+++. ++..+ ..+++|++|++++|.+++..+.. .....+
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l-------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTL-------------------RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHT-------------------TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHH-------------------ccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 466666666665532 12222 55556666666666554221110 011234
Q ss_pred CCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHh-h--ccccce
Q 048194 258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWR-V--SVVGLH 333 (558)
Q Consensus 258 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~-~--~~~~L~ 333 (558)
+|++|++++|.+++..... ++. +..+++|++|++++|.+.+..+..+.. + ..++|+
T Consensus 143 ~L~~L~L~~n~l~~~~~~~--------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEP--------------------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp CCCEEECTTSCCBGGGHHH--------------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred cceEEECCCCCCCHHHHHH--------------------HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 4555555555554322110 111 333445555555555544332222221 0 011355
Q ss_pred EEEcCCccccccC-----CC-CCCCccCEEEcccccCccc--------CCCCCCCCcEEEccCCcccccCCCCCccCCCC
Q 048194 334 CLNLSHNFLVGFQ-----AP-YSIPALRFIDLISNQLRGN--------IHQLPNNPIYIDFSNNNFTSSIPADTVNGTLP 399 (558)
Q Consensus 334 ~L~ls~n~l~~~~-----~~-~~~~~L~~L~l~~n~~~~~--------~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p 399 (558)
+|++++|.++... .. ..+++|++|++++|.+.+. +.....+|++|++++|.+++.-. ..++
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-----~~l~ 277 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-----GDLC 277 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-----HHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-----HHHH
Confidence 5555555554321 11 1245566666666555431 11124466666666666652100 0145
Q ss_pred CCCCCCCCCCEEECcCCcCCccCCccccc-----CCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEE
Q 048194 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAK-----CKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSI 474 (558)
Q Consensus 400 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L 474 (558)
..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++.....+ ...+..+++|++|
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-----------~~~l~~~~~L~~L 346 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF-----------SSVLAQNRFLLEL 346 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH-----------HHHHHHCSSCCEE
T ss_pred HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH-----------HHHHhhCCCccEE
Confidence 55666788999999999987654444433 3689999999998875422111 1223457899999
Q ss_pred ECCCCcccccCchhhcc-----cCCCCeeeCcCCcCcc----cccccccCCCCCCeecCCCCcCcccchhhhc-----CC
Q 048194 475 DFSTNNFKGPILEDVGL-----LKSLYGLNLSHNALTG----SIPSSFGNLKRLESLDLSMNNLSRAIPSQLA-----SL 540 (558)
Q Consensus 475 ~Ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-----~l 540 (558)
++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++.....+. ..
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~ 426 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 426 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTT
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCC
Confidence 99999988765555543 6799999999999986 6788888899999999999999865333322 23
Q ss_pred CCCCEEeCcCCcCee
Q 048194 541 YFLSYLNLSYNQLEG 555 (558)
Q Consensus 541 ~~L~~L~l~~n~l~~ 555 (558)
.+|+.|++.++.+..
T Consensus 427 ~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 427 CLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCCCEEECTTCCCCH
T ss_pred cchhheeecccccCH
Confidence 468888888776654
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.9e-29 Score=247.10 Aligned_cols=286 Identities=19% Similarity=0.228 Sum_probs=164.9
Q ss_pred CCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhh
Q 048194 141 RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQI 220 (558)
Q Consensus 141 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li 220 (558)
+++.++++++.++ .+|. .+ .++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..+
T Consensus 34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------- 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF----------- 98 (332)
T ss_dssp ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS-----------
T ss_pred cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh-----------
Confidence 5677777777666 4443 12 2466666666666665555566666666666666666654444443
Q ss_pred chhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-
Q 048194 221 KRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN- 299 (558)
Q Consensus 221 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~- 299 (558)
..+++|++|++++|.++ .++...+ ++|++|++++| +++.++.
T Consensus 99 --------~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n-------------------------~i~~~~~~ 141 (332)
T 2ft3_A 99 --------SPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDN-------------------------RIRKVPKG 141 (332)
T ss_dssp --------TTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSS-------------------------CCCCCCSG
T ss_pred --------hCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCC-------------------------ccCccCHh
Confidence 55555666666655554 3332211 44445555544 4444443
Q ss_pred -CCCCCCCCEEecCCCcccc--cCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCc
Q 048194 300 -LKNQSQLQYLYLSENQISR--EIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPI 376 (558)
Q Consensus 300 -~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 376 (558)
+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++++... .++|+.|++++|.+.
T Consensus 142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~----------- 206 (332)
T 2ft3_A 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQ----------- 206 (332)
T ss_dssp GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC---CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSCCC-----------
T ss_pred HhCCCccCCEEECCCCccccCCCCcccccCC---ccCEEECcCCCCCccCccc-cCCCCEEECCCCcCC-----------
Confidence 4445555555555555431 233333322 2555555555555433221 244555555555443
Q ss_pred EEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceee
Q 048194 377 YIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPIT 456 (558)
Q Consensus 377 ~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~ 456 (558)
+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..
T Consensus 207 -------------------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~---- 262 (332)
T 2ft3_A 207 -------------------AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD---- 262 (332)
T ss_dssp -------------------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG----
T ss_pred -------------------ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc----
Confidence 123345666667777777777777666666777777777777777776 45544432
Q ss_pred ccccchhhhhhhccceEEECCCCcccccCchhhcc------cCCCCeeeCcCCcCc--ccccccccCCCCCCeecCCCCc
Q 048194 457 IKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGL------LKSLYGLNLSHNALT--GSIPSSFGNLKRLESLDLSMNN 528 (558)
Q Consensus 457 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~N~ 528 (558)
+++|+.|++++|.+++..+..|.. .++|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 263 -----------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 -----------LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -----------CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -----------CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 677777777777777665555543 356788888888876 5666778888888888888874
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.9e-30 Score=252.88 Aligned_cols=247 Identities=26% Similarity=0.352 Sum_probs=218.8
Q ss_pred CCCCEEECCCCCCCC--CccchhhcCCCCCCEEeCcC-CcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194 91 HYLRSLNLARTSFNG--TQISSKLANISSLTYLNLSD-AGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL 167 (558)
Q Consensus 91 ~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 167 (558)
.++++|++++|.+.+ . +|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|. .+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTC
T ss_pred ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCC
Confidence 579999999999987 6 899999999999999995 999999999999999999999999999977776 68999999
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCC-CCCEEEcccccCCc
Q 048194 168 VCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQ-KLTPLLLSSNNLNG 246 (558)
Q Consensus 168 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~-~L~~L~l~~n~l~~ 246 (558)
++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+ ..++ +|++|++++|.+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-------------------~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-------------------GSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG-------------------GCCCTTCCEEECCSSEEEE
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH-------------------hhhhhcCcEEECcCCeeec
Confidence 999999999999999999999999999999999998888776 6776 99999999999987
Q ss_pred ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHH
Q 048194 247 TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIW 325 (558)
Q Consensus 247 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~ 325 (558)
.++ ..+..++ |++|++++|.+.+..+.. +..+++|+.|++++|+++..+. +..+++|++|++++|++++.+|..+.
T Consensus 189 ~~~-~~~~~l~-L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 189 KIP-PTFANLN-LAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp ECC-GGGGGCC-CSEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred cCC-hHHhCCc-ccEEECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence 776 5677776 999999999998776665 8899999999999999985444 88899999999999999989999888
Q ss_pred hhccccceEEEcCCccccccCCCCC-CCccCEEEccccc
Q 048194 326 RVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQ 363 (558)
Q Consensus 326 ~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~ 363 (558)
.++. |++|++++|.+++..+... +++|+.+++++|.
T Consensus 266 ~l~~--L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLKF--LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp GCTT--CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred cCcC--CCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 7766 8888888888886655533 7777777777776
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.2e-31 Score=283.95 Aligned_cols=403 Identities=14% Similarity=0.068 Sum_probs=228.4
Q ss_pred cccCCCCCCEEECCCCCCC---CC-----------ccchhhcCCCCCCEEeCcCCcCccCCChhccC-CCC-CcEEeccc
Q 048194 86 ILFSLHYLRSLNLARTSFN---GT-----------QISSKLANISSLTYLNLSDAGFAGQIPVQISR-MAR-LVALDFSF 149 (558)
Q Consensus 86 ~~~~l~~L~~L~L~~n~~~---~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~-L~~L~L~~ 149 (558)
.+..+++|++|+++++... +. .++.....+++|++|+|++|.+++..+..+.. +++ |++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 5678899999999775321 11 01122237899999999999888766666665 444 99999998
Q ss_pred ccc-cccc-cchhhcCCCCccEEEccCCccCcc----CCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchh
Q 048194 150 NQF-SGSI-SSIRWEHLLNLVCAVLSDNSLDGS----IPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRV 223 (558)
Q Consensus 150 n~~-~~~~-~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~ 223 (558)
|.. +... +. ...++++|++|++++|.+++. ++.....+++|++|++++|.+++.....+ +..
T Consensus 148 ~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l-----------~~~ 215 (592)
T 3ogk_B 148 CSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL-----------ETI 215 (592)
T ss_dssp CEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH-----------HHH
T ss_pred CCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH-----------HHH
Confidence 862 2111 22 345789999999999988655 33344578999999999998863322211 111
Q ss_pred hhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccc--cCCCcccCCCCCCCEEecCCCCCCCCCC-C
Q 048194 224 YSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAV--DESSRNYSFSPMLELLNLASCKLREIPN-L 300 (558)
Q Consensus 224 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~ 300 (558)
+ ..+++|++|++++|.+.+ ++ ..+..+++|++|+++...... ......+..+++|+.+.+.++....+|. +
T Consensus 216 ~----~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~ 289 (592)
T 3ogk_B 216 A----RNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289 (592)
T ss_dssp H----HHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG
T ss_pred H----hhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH
Confidence 2 567899999999988874 44 567888999999988643221 1111226677788888888776667776 6
Q ss_pred CCCCCCCEEecCCCcccccCCh-hHHhhccccceEEEcCCccccccCC-C--CCCCccCEEEccc-----------ccCc
Q 048194 301 KNQSQLQYLYLSENQISREIPN-WIWRVSVVGLHCLNLSHNFLVGFQA-P--YSIPALRFIDLIS-----------NQLR 365 (558)
Q Consensus 301 ~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~-~--~~~~~L~~L~l~~-----------n~~~ 365 (558)
..+++|++|++++|.+++.... .+..++ +|++|+++ +.+.+... . ..+++|++|++++ +.++
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~--~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCP--NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCT--TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCc--CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 6778888888888876543332 233333 37777777 33332111 1 1267777777772 3443
Q ss_pred cc----CCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCC-CCCCCEEECc----CCcCCcc-----CCcccccCCC
Q 048194 366 GN----IHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPR-NCLLQTLDLN----GNRPQGT-----VPKSIAKCKM 431 (558)
Q Consensus 366 ~~----~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~l~~l~~ 431 (558)
+. +....++|++|+++.+.+++. .+..+.. +++|+.|+++ .|.+++. ++..+..+++
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~---------~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~ 437 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNE---------SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHH---------HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHH---------HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC
Confidence 21 011234555555555544421 1112222 4445555553 3344432 2222344555
Q ss_pred CCEEECCCCc--CcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc-CchhhcccCCCCeeeCcCCcCccc
Q 048194 432 LEVLNLGNNQ--FSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP-ILEDVGLLKSLYGLNLSHNALTGS 508 (558)
Q Consensus 432 L~~L~l~~n~--i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 508 (558)
|+.|++++|. +++..+.. ....+++|++|++++|.+++. .+..+..+++|++|++++|.+++.
T Consensus 438 L~~L~L~~~~~~l~~~~~~~--------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSY--------------IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHH--------------HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred CCEEEEecCCCCccHHHHHH--------------HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 5555554332 22211110 112244555555555555432 222334455555555555555432
Q ss_pred -ccccccCCCCCCeecCCCCcCccc
Q 048194 509 -IPSSFGNLKRLESLDLSMNNLSRA 532 (558)
Q Consensus 509 -~~~~l~~l~~L~~L~L~~N~l~~~ 532 (558)
++..+..+++|+.|++++|++++.
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhcCccCeeECcCCcCCHH
Confidence 222234455555555555555443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5e-27 Score=228.43 Aligned_cols=224 Identities=24% Similarity=0.297 Sum_probs=134.8
Q ss_pred CCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCccccc--CChhHHhhccccceEEEcCCccccccCCC-CCCCccCE
Q 048194 282 PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISRE--IPNWIWRVSVVGLHCLNLSHNFLVGFQAP-YSIPALRF 356 (558)
Q Consensus 282 ~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~L~~ 356 (558)
+++++|++++|+++.+|. +..+++|++|++++|.+... .+..+..+.. |++|++++|.+...+.. ..+++|+.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~--L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS--LKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC--CCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc--cCEEECCCCccccChhhcCCCCCCCE
Confidence 455555555555555554 45666666666666665422 2344443333 66666666666554433 23566666
Q ss_pred EEcccccCcccCC----CCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCc-cCCcccccCCC
Q 048194 357 IDLISNQLRGNIH----QLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQG-TVPKSIAKCKM 431 (558)
Q Consensus 357 L~l~~n~~~~~~~----~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~ 431 (558)
|++++|.+.+..+ ..+.+|++|++++|.+. +..+..+..+++|++|++++|.+.+ ..|..+..+++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE---------ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCC---------ccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 6666665553221 12334555555555544 2344556666777777777777765 45666777777
Q ss_pred CCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccc
Q 048194 432 LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS 511 (558)
Q Consensus 432 L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 511 (558)
|++|++++|.+++..|..+.. +++|++|++++|.+++..+..+..+++|++|++++|++++..|.
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNS---------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTT---------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred CCEEECCCCCcCCcCHHHhcC---------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 777777777776655555433 66777777777777766555666677777777777777766666
Q ss_pred cccCCC-CCCeecCCCCcCcc
Q 048194 512 SFGNLK-RLESLDLSMNNLSR 531 (558)
Q Consensus 512 ~l~~l~-~L~~L~L~~N~l~~ 531 (558)
.+..++ +|+.|++++|++++
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEEC
T ss_pred HHHhhhccCCEEEccCCCeec
Confidence 666663 67777777777654
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.8e-28 Score=239.94 Aligned_cols=136 Identities=26% Similarity=0.321 Sum_probs=87.6
Q ss_pred CCCCCCCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcC
Q 048194 46 QWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSD 125 (558)
Q Consensus 46 ~w~~~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 125 (558)
.|......|.|.++ | +.+++.++. +|. .+. ++|++|++++|.+.+. .+..+.++++|++|++++
T Consensus 22 ~~~~~~~~C~~~~~-c---------~~~~~~l~~-iP~--~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~ 85 (353)
T 2z80_A 22 SSNQASLSCDRNGI-C---------KGSSGSLNS-IPS--GLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTS 85 (353)
T ss_dssp -----CCEECTTSE-E---------ECCSTTCSS-CCT--TCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTT
T ss_pred CCCccCCCCCCCeE-e---------eCCCCCccc-ccc--ccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCC
Confidence 35556677888876 5 345566653 333 222 4788888888887764 445678888888888888
Q ss_pred CcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCc--cccCCCCCCEEeCccc
Q 048194 126 AGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPR--SMFEFPMLQQLQLANN 199 (558)
Q Consensus 126 n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n 199 (558)
|.+++..|..|.++++|++|++++|.++ .++...++++++|++|++++|.+.+ +|. .+..+++|++|++++|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 86 NGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEES
T ss_pred CccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCC
Confidence 8887666777778888888888888777 4433246666777777777766663 332 4555666666666665
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=235.62 Aligned_cols=256 Identities=17% Similarity=0.158 Sum_probs=193.0
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.++++|+++++.+++..+. .+..+++|++|++++|.+.+. .+..+.++++|++|++++|.+++..+..+.++++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 6899999999999876665 689999999999999999876 6778999999999999999999555555899999999
Q ss_pred Eecccccccccccc-hhhcCCCCccEEEccCC-ccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhch
Q 048194 145 LDFSFNQFSGSISS-IRWEHLLNLVCAVLSDN-SLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKR 222 (558)
Q Consensus 145 L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~ 222 (558)
|++++|.++ .++. ..+.++++|++|++++| .+....+..+..+++|++|++++|.+++..|..+
T Consensus 129 L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l------------- 194 (353)
T 2z80_A 129 LNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL------------- 194 (353)
T ss_dssp EECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-------------
T ss_pred EECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH-------------
Confidence 999999998 5543 35889999999999998 4666667788899999999999999987777666
Q ss_pred hhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCC
Q 048194 223 VYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKN 302 (558)
Q Consensus 223 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~ 302 (558)
..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+.. + +....
T Consensus 195 ------~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l-------------------~~~~~ 247 (353)
T 2z80_A 195 ------KSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE-L-------------------STGET 247 (353)
T ss_dssp ------TTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------C
T ss_pred ------hccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc-c-------------------ccccc
Confidence 78889999999999986 666556667889999999998887543322 1 11223
Q ss_pred CCCCCEEecCCCcccc----cCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcc
Q 048194 303 QSQLQYLYLSENQISR----EIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRG 366 (558)
Q Consensus 303 ~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~ 366 (558)
...++.++++++.+.+ .+|..+..++. |++|++++|.++.++.. ..+++|+.|++++|.+.+
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~--L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISG--LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTT--CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccC--CCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 3445556666655543 24445554444 77777777766655543 236666666666666553
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6.9e-26 Score=238.60 Aligned_cols=261 Identities=25% Similarity=0.260 Sum_probs=215.7
Q ss_pred CCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEec
Q 048194 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL 311 (558)
Q Consensus 232 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l 311 (558)
.+++.|++++|.++ .+|... . ++|++|++++|.++.. +. .+++|+.|++++|+++.+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l-~--~~L~~L~L~~N~l~~l-p~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCL-P--AHITTLVIPDNNLTSL-PA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCC-C--TTCSEEEECSCCCSCC-CC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhh-C--CCCcEEEecCCCCCCC-CC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEEC
Confidence 46899999999998 777432 2 7999999999998843 32 47899999999999999997 7789999999
Q ss_pred CCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCC
Q 048194 312 SENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPA 391 (558)
Q Consensus 312 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 391 (558)
++|.+++ +|. .. ++|+.|++++|.++.++.. +++|+.|++++|.+++ +|..+.+|+.|++++|.++
T Consensus 109 s~N~l~~-l~~---~l--~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~----- 174 (622)
T 3g06_A 109 FSNPLTH-LPA---LP--SGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLT----- 174 (622)
T ss_dssp CSCCCCC-CCC---CC--TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-----
T ss_pred cCCcCCC-CCC---CC--CCcCEEECCCCCCCcCCCC--CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCC-----
Confidence 9999975 444 22 3499999999999886653 6899999999999885 5667889999999999998
Q ss_pred CCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccc
Q 048194 392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF 471 (558)
Q Consensus 392 ~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L 471 (558)
.+| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++. +|.. +++|
T Consensus 175 -----~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~~------------------~~~L 223 (622)
T 3g06_A 175 -----SLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPAL------------------PSGL 223 (622)
T ss_dssp -----CCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCC------------------CTTC
T ss_pred -----CCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCCC------------------CCCC
Confidence 455 446789999999999985 443 24789999999999873 3422 5789
Q ss_pred eEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCC
Q 048194 472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551 (558)
Q Consensus 472 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 551 (558)
++|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|+|++|+++ .+|..+.++++|+.|++++|
T Consensus 224 ~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 224 KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 999999999986 44 55789999999999998 5675 6789999999999998 67888999999999999999
Q ss_pred cCeeec
Q 048194 552 QLEGRF 557 (558)
Q Consensus 552 ~l~~~~ 557 (558)
++++.+
T Consensus 295 ~l~~~~ 300 (622)
T 3g06_A 295 PLSERT 300 (622)
T ss_dssp CCCHHH
T ss_pred CCCCcC
Confidence 998764
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.1e-27 Score=229.95 Aligned_cols=234 Identities=19% Similarity=0.163 Sum_probs=154.0
Q ss_pred CCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceE
Q 048194 256 LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC 334 (558)
Q Consensus 256 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 334 (558)
.++++.|++++|.+. ..+.. +..+++|++|++++|.++.+|. +..+++|++|++++|.+. .+|..+..
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-------- 148 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIAS-------- 148 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG--------
T ss_pred ccceeEEEccCCCch-hcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhc--------
Confidence 355666666666665 33333 4445566666666666555555 555556666666665554 44544443
Q ss_pred EEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECc
Q 048194 335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLN 414 (558)
Q Consensus 335 L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~ 414 (558)
+++|+.|++++|.+.+.+|..... ..++..+..+++|++|+++
T Consensus 149 ----------------l~~L~~L~L~~n~~~~~~p~~~~~---------------------~~~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 149 ----------------LNRLRELSIRACPELTELPEPLAS---------------------TDASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp ----------------CTTCCEEEEEEETTCCCCCSCSEE---------------------EC-CCCEEESTTCCEEEEE
T ss_pred ----------------CcCCCEEECCCCCCccccChhHhh---------------------ccchhhhccCCCCCEEECc
Confidence 445555555555444333321110 0122334456778888888
Q ss_pred CCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCC
Q 048194 415 GNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKS 494 (558)
Q Consensus 415 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 494 (558)
+|.++ .+|..+..+++|++|++++|.+++ +|..+. .+++|++|++++|.+.+.+|..++.+++
T Consensus 192 ~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~---------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 192 WTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH---------------HLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp EECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG---------------GCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred CCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc---------------cCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 88777 677777788888888888887774 343332 3777888888888877777778888888
Q ss_pred CCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCe
Q 048194 495 LYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554 (558)
Q Consensus 495 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~ 554 (558)
|++|++++|.+.+.+|..+.++++|+.|+|++|++.+.+|..+.++++|+.+++..+.+.
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888887788888888888888888888888888888888888888888776554
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.7e-27 Score=226.71 Aligned_cols=240 Identities=21% Similarity=0.277 Sum_probs=117.6
Q ss_pred CCccceEeCCC----------CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCc-cchhhcCCCCCCEEe
Q 048194 54 CDWSGVDCDEA----------GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQ-ISSKLANISSLTYLN 122 (558)
Q Consensus 54 c~~~~~~c~~~----------~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~ 122 (558)
|.|.++.|... .++++|+++++.+....+. .+..+++|++|++++|.+.... .+..+..+++|++|+
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG--VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh--HhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 67888888642 2455555555555432222 3445555555555555544210 134444455555555
Q ss_pred CcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCC
Q 048194 123 LSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFG 202 (558)
Q Consensus 123 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 202 (558)
+++|.+. .+|..+..+++|++|++++|.+++..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 5555554 344445555555555555555542222113455555555555555555444444555555555555555554
Q ss_pred C-CCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCC
Q 048194 203 G-SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS 281 (558)
Q Consensus 203 ~-~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 281 (558)
+ ..|..+ ..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+.. +..+
T Consensus 164 ~~~~~~~~-------------------~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l 222 (306)
T 2z66_A 164 ENFLPDIF-------------------TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCL 222 (306)
T ss_dssp GGEECSCC-------------------TTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTC
T ss_pred cccchhHH-------------------hhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhh-ccCc
Confidence 3 233332 44455555555555554 222234455555555555555554433322 4445
Q ss_pred CCCCEEecCCCCCCCCC-C-CCCC-CCCCEEecCCCccc
Q 048194 282 PMLELLNLASCKLREIP-N-LKNQ-SQLQYLYLSENQIS 317 (558)
Q Consensus 282 ~~L~~L~l~~n~l~~l~-~-~~~~-~~L~~L~l~~n~l~ 317 (558)
++|+.|++++|+++..+ . +..+ ++|++|++++|++.
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 55555555555554322 2 4444 24555555555544
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=8.7e-26 Score=237.80 Aligned_cols=134 Identities=25% Similarity=0.262 Sum_probs=65.6
Q ss_pred CCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEec
Q 048194 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL 311 (558)
Q Consensus 232 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l 311 (558)
++|++|++++|.++ .+|. .+++|++|++++|.+++... .+++|+.|++++|+++.+|.. +++|++|++
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPVL--PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCCC--CTTCCEEEC
T ss_pred CCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCCC--CCCCCEEEC
Confidence 44555555555544 3332 34555555555555543221 245556666666666655541 255666666
Q ss_pred CCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCccc
Q 048194 312 SENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFT 386 (558)
Q Consensus 312 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~ 386 (558)
++|++++ +|..+ .+|+.|++++|.++.++ ..+++|+.|++++|.+++ +|..+.+|+.|++++|.++
T Consensus 149 s~N~l~~-l~~~~-----~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 149 SDNQLAS-LPALP-----SELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT 214 (622)
T ss_dssp CSSCCSC-CCCCC-----TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS
T ss_pred cCCcCCC-cCCcc-----CCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCccc
Confidence 6666543 23211 12555555555555443 224555566666555542 3333344444444444444
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3e-28 Score=238.00 Aligned_cols=259 Identities=21% Similarity=0.153 Sum_probs=182.9
Q ss_pred CCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecC
Q 048194 233 KLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS 312 (558)
Q Consensus 233 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~ 312 (558)
+++..+++.+.+. ..+...+..+++|++|++++|.+++..+.. +..+++|+.|++++|+++.++.+..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHH-HTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHH-hhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECc
Confidence 3455555555554 333344445556666666666666443333 55566666666666665544445555556666666
Q ss_pred CCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCC
Q 048194 313 ENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPAD 392 (558)
Q Consensus 313 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 392 (558)
+|.++ +... .++|+.|++++|.+++..+..+.+|++|++++|.++
T Consensus 89 ~n~l~--------------------------~l~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~------ 133 (317)
T 3o53_A 89 NNYVQ--------------------------ELLV---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT------ 133 (317)
T ss_dssp SSEEE--------------------------EEEE---CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC------
T ss_pred CCccc--------------------------cccC---CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC------
Confidence 65554 3221 245555555555555554555566777777777766
Q ss_pred CccCCCCCCCCCCCCCCEEECcCCcCCccCCccc-ccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccc
Q 048194 393 TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF 471 (558)
Q Consensus 393 ~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L 471 (558)
+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+.. .+++|
T Consensus 134 ---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----------------~l~~L 193 (317)
T 3o53_A 134 ---MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----------------VFAKL 193 (317)
T ss_dssp ---SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----------------CCTTC
T ss_pred ---CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-----------------ccccC
Confidence 2345567788899999999999998777766 47899999999999998652211 27899
Q ss_pred eEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc-ccchhhhcCCCCCCEEeCcC
Q 048194 472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS-RAIPSQLASLYFLSYLNLSY 550 (558)
Q Consensus 472 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 550 (558)
++|++++|.+++.. ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +..|..+..+++|+.+++++
T Consensus 194 ~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 194 KTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 99999999999754 45899999999999999999 68888999999999999999998 77888899999999998883
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=8.1e-30 Score=271.79 Aligned_cols=418 Identities=13% Similarity=0.081 Sum_probs=285.4
Q ss_pred CCEEEEEcCCCCcc---ccccCc----------ccccCCCCCCEEECCCCCCCCCccchhhcC-CCC-CCEEeCcCCc-C
Q 048194 65 GHVIGLDLSTESIS---GGIENA----------AILFSLHYLRSLNLARTSFNGTQISSKLAN-ISS-LTYLNLSDAG-F 128 (558)
Q Consensus 65 ~~v~~L~l~~~~~~---~~~~~~----------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~-L~~L~L~~n~-l 128 (558)
+++++|+++++... +..+.. .....+++|++|+|++|.+.+. .+..+.. ++. |++|++++|. +
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHH-HHHHHHHhccccCcEEECcCCCCc
Confidence 77999999875431 122210 0122789999999999988765 4555555 344 9999999986 2
Q ss_pred cc-CCChhccCCCCCcEEeccccccccc----ccchhhcCCCCccEEEccCCccC----ccCCccccCCCCCCEEeCccc
Q 048194 129 AG-QIPVQISRMARLVALDFSFNQFSGS----ISSIRWEHLLNLVCAVLSDNSLD----GSIPRSMFEFPMLQQLQLANN 199 (558)
Q Consensus 129 ~~-~~p~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n 199 (558)
+. .++....++++|++|++++|.+++. ++. ...++++|++|++++|.++ +.++..+.++++|++|++++|
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 21 1233345789999999999988754 222 3577899999999999987 334445567899999999999
Q ss_pred cCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCc--ccChhhhcCCCCCCEEEccCCcccccCCCcc
Q 048194 200 QFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG--TVQLDKILSLGNLAKLDLSYNSLAVDESSRN 277 (558)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 277 (558)
.+.+ ++..+ ..+++|++|+++...... ......+..+++|+.|+++++... ..+. .
T Consensus 231 ~~~~-l~~~~-------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~ 288 (592)
T 3ogk_B 231 EILE-LVGFF-------------------KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-L 288 (592)
T ss_dssp BGGG-GHHHH-------------------HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-G
T ss_pred cHHH-HHHHH-------------------hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-H
Confidence 8874 44443 778999999998632210 111234667889999999885332 2222 2
Q ss_pred cCCCCCCCEEecCCCCCC--CCCC-CCCCCCCCEEecCCCcccc-cCChhHHhhccccceEEEcCC-----------ccc
Q 048194 278 YSFSPMLELLNLASCKLR--EIPN-LKNQSQLQYLYLSENQISR-EIPNWIWRVSVVGLHCLNLSH-----------NFL 342 (558)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~--~l~~-~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~ls~-----------n~l 342 (558)
+..+++|++|++++|.++ .++. +..+++|++|++++ .+.+ .++.....++. |++|++++ +.+
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~--L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQ--LKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTT--CCEEEEECCCCSSTTSSTTCCC
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCC--CCEEEeecCccccccccccCcc
Confidence 667889999999999876 2323 67899999999994 4433 33333344444 99999993 455
Q ss_pred cccCCC---CCCCccCEEEcccccCcccCC----CCCCCCcEEEcc----CCcccccCCCCCccCCCCCCCCCCCCCCEE
Q 048194 343 VGFQAP---YSIPALRFIDLISNQLRGNIH----QLPNNPIYIDFS----NNNFTSSIPADTVNGTLPDTFPRNCLLQTL 411 (558)
Q Consensus 343 ~~~~~~---~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~l~l~----~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L 411 (558)
++.... ..+++|+.|+++.+.+++..+ ...++|+.|+++ .|.+++. |.. ..++..+..+++|++|
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~---~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLD---NGVRSLLIGCKKLRRF 441 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCH---HHHHHHHHHCTTCCEE
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHH---HHHHHHHHhCCCCCEE
Confidence 543221 238999999998888875433 225689999997 4555521 000 0122225568899999
Q ss_pred ECcCCc--CCccCCcccc-cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC-ch
Q 048194 412 DLNGNR--PQGTVPKSIA-KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI-LE 487 (558)
Q Consensus 412 ~l~~n~--l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~ 487 (558)
+++.|. +++..+..+. .+++|++|++++|.+++.... .....+++|++|++++|.+++.. +.
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM--------------EFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH--------------HHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH--------------HHHhcCcccCeeeccCCCCcHHHHHH
Confidence 998644 6665555554 489999999999998753211 12244799999999999987553 34
Q ss_pred hhcccCCCCeeeCcCCcCcccccccc-cCCCCCCeecCCCC
Q 048194 488 DVGLLKSLYGLNLSHNALTGSIPSSF-GNLKRLESLDLSMN 527 (558)
Q Consensus 488 ~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~N 527 (558)
.+..+++|++|++++|++++.....+ ..++.+....+..+
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 45679999999999999986544433 35677766666554
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.1e-25 Score=229.13 Aligned_cols=200 Identities=20% Similarity=0.184 Sum_probs=113.1
Q ss_pred CEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEcc
Q 048194 94 RSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLS 173 (558)
Q Consensus 94 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 173 (558)
+.++.++..+.. +|..+. +++++|+|++|.+++..|..|.++++|++|+|++|.++
T Consensus 57 ~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-------------------- 112 (452)
T 3zyi_A 57 SKVVCTRRGLSE--VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-------------------- 112 (452)
T ss_dssp CEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred cEEEECCCCcCc--cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--------------------
Confidence 444554444443 333222 34555555555555444455555555555555555554
Q ss_pred CCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhh
Q 048194 174 DNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKI 253 (558)
Q Consensus 174 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 253 (558)
+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+. .++...+
T Consensus 113 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------~~l~~L~~L~L~~N~l~-~~~~~~~ 167 (452)
T 3zyi_A 113 -----QIEVGAFNGLASLNTLELFDNWLTVIPSGAF-------------------EYLSKLRELWLRNNPIE-SIPSYAF 167 (452)
T ss_dssp -----EECTTTTTTCTTCCEEECCSSCCSBCCTTTS-------------------SSCTTCCEEECCSCCCC-EECTTTT
T ss_pred -----CcChhhccCcccCCEEECCCCcCCccChhhh-------------------cccCCCCEEECCCCCcc-eeCHhHH
Confidence 3344444445555555555555443333322 44455555555555554 4444455
Q ss_pred cCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccce
Q 048194 254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLH 333 (558)
Q Consensus 254 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 333 (558)
..+++|++|++++|...+..+...+..+++|+.|++++|+++.+|.+..+++|++|++++|.+.+..|..+..+.. |+
T Consensus 168 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~ 245 (452)
T 3zyi_A 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS--LK 245 (452)
T ss_dssp TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTT--CC
T ss_pred hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccC--CC
Confidence 5666666666666433333333336677778888888888887777888888888888888888777776665544 55
Q ss_pred EEEcCCccccc
Q 048194 334 CLNLSHNFLVG 344 (558)
Q Consensus 334 ~L~ls~n~l~~ 344 (558)
+|++++|.+++
T Consensus 246 ~L~L~~n~l~~ 256 (452)
T 3zyi_A 246 KLWVMNSQVSL 256 (452)
T ss_dssp EEECTTSCCCE
T ss_pred EEEeCCCcCce
Confidence 55555555544
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.1e-28 Score=237.30 Aligned_cols=247 Identities=21% Similarity=0.241 Sum_probs=120.0
Q ss_pred cCCCCCCCCCCCccceEeCCC-CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhc-------CC
Q 048194 44 LMQWRQSTDCCDWSGVDCDEA-GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLA-------NI 115 (558)
Q Consensus 44 ~~~w~~~~~~c~~~~~~c~~~-~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-------~l 115 (558)
...|.....|+.+..+..... .+++.++++++.+ ..|. .+... |++|++++|.+....+|..+. ++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~--~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l 94 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLG--QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI 94 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCH--HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHH--HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc
Confidence 445654444544444322111 3444555555555 2332 22222 555556555553322444443 45
Q ss_pred CCCCEEeCcCCcCccCCChhc--cCCCCCcEEecccccccccccchhhcCC-----CCccEEEccCCccCccCCccccCC
Q 048194 116 SSLTYLNLSDAGFAGQIPVQI--SRMARLVALDFSFNQFSGSISSIRWEHL-----LNLVCAVLSDNSLDGSIPRSMFEF 188 (558)
Q Consensus 116 ~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l 188 (558)
++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |. .++.+ ++|++|++++|.+.+..|..+..+
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 666666666666655555544 5566666666666666533 32 23333 556666666666655555555556
Q ss_pred CCCCEEeCccccCCCCC--CccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCc--ccChhhhcCCCCCCEEEc
Q 048194 189 PMLQQLQLANNQFGGSI--PRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG--TVQLDKILSLGNLAKLDL 264 (558)
Q Consensus 189 ~~L~~L~l~~n~~~~~~--~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l 264 (558)
++|++|++++|++.+.. +..+ ....+++|++|++++|.+++ .++...+..+++|++|++
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~-----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISAL-----------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHS-----------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred CCCCEEECCCCCcCcchHHHHHH-----------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence 66666666666544321 1100 00344555555555555542 222233345555555555
Q ss_pred cCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCccc
Q 048194 265 SYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQIS 317 (558)
Q Consensus 265 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~ 317 (558)
++|.+.+..+...+..+++|+.|++++|+++.+|. +. ++|++|++++|+++
T Consensus 236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp TTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC
T ss_pred CCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC
Confidence 55555544432223444555555555555554444 22 44444444444444
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.4e-25 Score=227.80 Aligned_cols=201 Identities=24% Similarity=0.224 Sum_probs=119.6
Q ss_pred CCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEc
Q 048194 93 LRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVL 172 (558)
Q Consensus 93 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 172 (558)
.+.++.++..+.. +|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+. .++...+.++++|++|++
T Consensus 45 ~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLRE--VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSS--CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCc--CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 4456666666654 454443 56777777777777666666777777777777777766 332224566666666666
Q ss_pred cCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhh
Q 048194 173 SDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDK 252 (558)
Q Consensus 173 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 252 (558)
++|.++...+..+..+++|++|++++|.+.+. +...
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--------------------------------------------~~~~ 155 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESI--------------------------------------------PSYA 155 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE--------------------------------------------CTTT
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCccccc--------------------------------------------CHHH
Confidence 66666644444555566666666666655533 3333
Q ss_pred hcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccc
Q 048194 253 ILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGL 332 (558)
Q Consensus 253 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 332 (558)
+..+++|++|++++|...+..+...+..+++|+.|++++|+++.+|.+..+++|++|++++|++++..|..+..+.. |
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L 233 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH--L 233 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTT--C
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCcc--C
Confidence 44445555555554332223333335666677777777777777777777777888888887777666666555443 5
Q ss_pred eEEEcCCccccc
Q 048194 333 HCLNLSHNFLVG 344 (558)
Q Consensus 333 ~~L~ls~n~l~~ 344 (558)
++|++++|.+++
T Consensus 234 ~~L~L~~n~l~~ 245 (440)
T 3zyj_A 234 QKLWMIQSQIQV 245 (440)
T ss_dssp CEEECTTCCCCE
T ss_pred CEEECCCCceeE
Confidence 555555554443
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.4e-25 Score=230.33 Aligned_cols=226 Identities=21% Similarity=0.187 Sum_probs=157.1
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 144 (558)
.+++.|+|++|++.+..+. .+..+++|++|+|++|.+.+. .+..|.++++|++|+|++|.+++..+..|..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 3677777777777766555 677777777777777777665 5567777777777777777777555556777777777
Q ss_pred EecccccccccccchhhcCCCCccEEEccCCccCccCC-ccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchh
Q 048194 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIP-RSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRV 223 (558)
Q Consensus 145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~ 223 (558)
|++++|.+. .++...+.++++|++|++++|...+.++ ..+..+++|++|++++|.+++. |..
T Consensus 152 L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~--------------- 214 (452)
T 3zyi_A 152 LWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNL--------------- 214 (452)
T ss_dssp EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCC---------------
T ss_pred EECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccc---------------
Confidence 777777777 4433357777777777777743332333 3566777777777777777633 332
Q ss_pred hhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CC
Q 048194 224 YSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LK 301 (558)
Q Consensus 224 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~ 301 (558)
..+++|++|++++|.++ .++...+..+++|++|++++|++.+..+.. +..+++|+.|++++|+++.+|. +.
T Consensus 215 -----~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 215 -----TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp -----TTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred -----cccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEECCCCcCCccChHHhc
Confidence 66677777777777776 444466777777777777777777655554 6677777777777777776665 66
Q ss_pred CCCCCCEEecCCCccc
Q 048194 302 NQSQLQYLYLSENQIS 317 (558)
Q Consensus 302 ~~~~L~~L~l~~n~l~ 317 (558)
.+++|+.|++++|++.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 6777777777777654
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.4e-25 Score=227.75 Aligned_cols=224 Identities=22% Similarity=0.203 Sum_probs=125.9
Q ss_pred CEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEE
Q 048194 66 HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL 145 (558)
Q Consensus 66 ~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 145 (558)
.++.|+|++|.+.+..+. .+..+++|++|+|++|.+... .+..|.++++|++|+|++|.+++..+..|..+++|++|
T Consensus 65 ~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TCSEEECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCcEEEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 455666666666554444 456666666666666666554 44556666666666666666664444455666666666
Q ss_pred ecccccccccccchhhcCCCCccEEEccCCc-cCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhh
Q 048194 146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDNS-LDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVY 224 (558)
Q Consensus 146 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~ 224 (558)
++++|.+. .++...+.++++|++|++++|. +....+..+..+++|++|++++|.++ .+|..
T Consensus 142 ~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~---------------- 203 (440)
T 3zyj_A 142 WLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNL---------------- 203 (440)
T ss_dssp ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCC----------------
T ss_pred eCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccccc----------------
Confidence 66666665 3332245566666666666533 22222234555666666666666655 33321
Q ss_pred hcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCC
Q 048194 225 SCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKN 302 (558)
Q Consensus 225 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~ 302 (558)
..+++|++|++++|.++ .++...+..+++|++|++++|++.+..+.. +..+++|+.|++++|+++.+|. +..
T Consensus 204 ----~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 204 ----TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNA-FDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp ----TTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTS-STTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred ----CCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhh-hcCCCCCCEEECCCCCCCccChhHhcc
Confidence 45556666666666665 333345556666666666666665444433 5556666666666666665554 455
Q ss_pred CCCCCEEecCCCcc
Q 048194 303 QSQLQYLYLSENQI 316 (558)
Q Consensus 303 ~~~L~~L~l~~n~l 316 (558)
+++|+.|++++|++
T Consensus 278 l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 278 LHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEcCCCCc
Confidence 56666666666654
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-25 Score=215.69 Aligned_cols=249 Identities=23% Similarity=0.255 Sum_probs=157.8
Q ss_pred CCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCC-CCCCCC--CCCCCCCC
Q 048194 231 TQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK-LREIPN--LKNQSQLQ 307 (558)
Q Consensus 231 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~l~~--~~~~~~L~ 307 (558)
.+++++|++++|.++ .++...+..+++|++|++++|.+++..+.. +..+++|++|++++|. ++.++. +..+++|+
T Consensus 31 ~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 346667777776666 444455666666666666666666544444 5556666666666664 555532 55566666
Q ss_pred EEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccc
Q 048194 308 YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTS 387 (558)
Q Consensus 308 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~ 387 (558)
+|++++|.+.+..+..+.. +++|++|++++|++.
T Consensus 109 ~L~l~~n~l~~~~~~~~~~------------------------l~~L~~L~l~~n~l~---------------------- 142 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRG------------------------LAALQYLYLQDNALQ---------------------- 142 (285)
T ss_dssp EEECTTSCCCCCCTTTTTT------------------------CTTCCEEECCSSCCC----------------------
T ss_pred EEECCCCcCCEECHhHhhC------------------------CcCCCEEECCCCccc----------------------
Confidence 6666666555443433333 444555555444443
Q ss_pred cCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhh
Q 048194 388 SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467 (558)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~ 467 (558)
+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..
T Consensus 143 --------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------- 199 (285)
T 1ozn_A 143 --------ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--------------- 199 (285)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT---------------
T ss_pred --------ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC---------------
Confidence 122334666777888888888777665666777888888888888877766666543
Q ss_pred hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcC--CCCCCE
Q 048194 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLAS--LYFLSY 545 (558)
Q Consensus 468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~ 545 (558)
+++|++|++++|.+++..+..+..+++|++|++++|++.+..+.. .-...++.+..+.+.+....|..+.+ +..++.
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~ 278 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA 278 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCG
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCH
Confidence 677888888888888766677888888888888888887543321 11233555667777787778877765 445555
Q ss_pred EeCcCC
Q 048194 546 LNLSYN 551 (558)
Q Consensus 546 L~l~~n 551 (558)
.++.+|
T Consensus 279 ~~l~~C 284 (285)
T 1ozn_A 279 NDLQGC 284 (285)
T ss_dssp GGSCCC
T ss_pred HHhccC
Confidence 566555
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4e-25 Score=212.59 Aligned_cols=221 Identities=19% Similarity=0.160 Sum_probs=114.4
Q ss_pred CEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEc
Q 048194 260 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL 337 (558)
Q Consensus 260 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 337 (558)
++++.+++.++.. |. ...++++.|++++|.++.++. +..+++|++|++++|.+++..|..+..++. |++|++
T Consensus 14 ~~~~c~~~~l~~i-p~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL--LEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSC-CT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT--CCEEEC
T ss_pred eEEEcCcCCcccC-Cc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC--CCEEeC
Confidence 4455555555422 21 123456666666666655543 555556666666666555444444444333 444444
Q ss_pred CCcc-ccccCCC--CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECc
Q 048194 338 SHNF-LVGFQAP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLN 414 (558)
Q Consensus 338 s~n~-l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~ 414 (558)
++|. +....+. ..+++|++|++++|. ++ +..|..+..+++|++|+++
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~---------------------l~---------~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCG---------------------LQ---------ELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSC---------------------CC---------CCCTTTTTTCTTCCEEECC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCc---------------------CC---------EECHhHhhCCcCCCEEECC
Confidence 4443 3333211 113333333333333 22 1234445555666666666
Q ss_pred CCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCC
Q 048194 415 GNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKS 494 (558)
Q Consensus 415 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 494 (558)
+|.+++..+..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..+..++.+++
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG---------------LHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT---------------CTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC---------------ccccCEEECCCCcccccCHhHccCccc
Confidence 66666544455566666666666666665433333322 555666666666666555555666666
Q ss_pred CCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194 495 LYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 495 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 6666666666664444445566666666666666543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.6e-27 Score=232.75 Aligned_cols=248 Identities=20% Similarity=0.200 Sum_probs=136.5
Q ss_pred cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194 88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL 167 (558)
Q Consensus 88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 167 (558)
..+++|++|++++|.+.+. .|..+.++++|++|++++|.+++..+ +..+++|++|++++|.+++ +...+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~------l~~~~-- 99 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGP-- 99 (317)
T ss_dssp TTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE------EEECT--
T ss_pred ccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc------ccCCC--
Confidence 3444555555555555554 44455555555555555555553332 5555555555555555541 11224
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcc
Q 048194 168 VCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT 247 (558)
Q Consensus 168 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~ 247 (558)
+|++|++++|.+++..+ ..+++|++|++++|.++ .
T Consensus 100 ----------------------~L~~L~l~~n~l~~~~~----------------------~~~~~L~~L~l~~N~l~-~ 134 (317)
T 3o53_A 100 ----------------------SIETLHAANNNISRVSC----------------------SRGQGKKNIYLANNKIT-M 134 (317)
T ss_dssp ----------------------TCCEEECCSSCCSEEEE----------------------CCCSSCEEEECCSSCCC-S
T ss_pred ----------------------CcCEEECCCCccCCcCc----------------------cccCCCCEEECCCCCCC-C
Confidence 44444454444443222 22344555555555554 2
Q ss_pred cChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhh
Q 048194 248 VQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRV 327 (558)
Q Consensus 248 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 327 (558)
++...+..+++|++|++++|.+.+..+......+++|+.|++++|.++.++....+++|++|++++|++++ +|..+..+
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 213 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSA 213 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc-chhhhccc
Confidence 22234445555666666666555444443233556677777777776666665557788888888888764 33334433
Q ss_pred ccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCC
Q 048194 328 SVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL 407 (558)
Q Consensus 328 ~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~ 407 (558)
+ +|+.|++++|+++ .+|..+..+++
T Consensus 214 ~------------------------~L~~L~L~~N~l~-------------------------------~l~~~~~~l~~ 238 (317)
T 3o53_A 214 A------------------------GVTWISLRNNKLV-------------------------------LIEKALRFSQN 238 (317)
T ss_dssp T------------------------TCSEEECTTSCCC-------------------------------EECTTCCCCTT
T ss_pred C------------------------cccEEECcCCccc-------------------------------chhhHhhcCCC
Confidence 3 3333333333332 34555666777
Q ss_pred CCEEECcCCcCC-ccCCcccccCCCCCEEECCCC-cCcccCC
Q 048194 408 LQTLDLNGNRPQ-GTVPKSIAKCKMLEVLNLGNN-QFSDKFP 447 (558)
Q Consensus 408 L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n-~i~~~~p 447 (558)
|+.|++++|.+. +.++..+..+++|+.+++.++ .+.+..|
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 888888888887 567777777888888877743 3444333
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.1e-28 Score=259.72 Aligned_cols=443 Identities=13% Similarity=0.036 Sum_probs=233.7
Q ss_pred CCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCC-c-c------------chhhcCCCC
Q 048194 52 DCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGT-Q-I------------SSKLANISS 117 (558)
Q Consensus 52 ~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~-~------------~~~~~~l~~ 117 (558)
.|+.|.++.. ...+.++++.+.... ... .+..+++|++|+++++..... . . +.....+++
T Consensus 33 vck~W~~~~~---~~~~~l~~~~~~~~~-~~~--~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~ 106 (594)
T 2p1m_B 33 VCKSWYEIER---WCRRKVFIGNCYAVS-PAT--VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106 (594)
T ss_dssp SCHHHHHHHH---HHCCEEEESSTTSSC-HHH--HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHHHHHHhhh---hhceEEeeccccccC-HHH--HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC
Confidence 3456877622 223455665543321 112 567889999999998753211 0 1 122356889
Q ss_pred CCEEeCcCCcCccCCChhcc-CCCCCcEEecccc-ccccc-ccchhhcCCCCccEEEccCCccCccCCcccc----CCCC
Q 048194 118 LTYLNLSDAGFAGQIPVQIS-RMARLVALDFSFN-QFSGS-ISSIRWEHLLNLVCAVLSDNSLDGSIPRSMF----EFPM 190 (558)
Q Consensus 118 L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n-~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~ 190 (558)
|++|++++|.+++..+..+. .+++|++|++++| .++.. ++. ...++++|++|++++|.+++..+..+. .+++
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 99999999998877666665 6899999999988 45432 233 355789999999999987765444443 6779
Q ss_pred CCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcc-
Q 048194 191 LQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL- 269 (558)
Q Consensus 191 L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l- 269 (558)
|++|++++|. +.+... .+......+++|++|++++|...+.++ ..+..+++|++|++..+..
T Consensus 186 L~~L~l~~~~--~~~~~~--------------~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~ 248 (594)
T 2p1m_B 186 LVSLNISCLA--SEVSFS--------------ALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAE 248 (594)
T ss_dssp CCEEECTTCC--SCCCHH--------------HHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCC
T ss_pred CcEEEecccC--CcCCHH--------------HHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCc
Confidence 9999999886 122111 011111456889999998883322333 4567788899998765532
Q ss_pred ------cccCCCcccCCCCCCCEE-ecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChh-HHhhccccceEEEcCCc
Q 048194 270 ------AVDESSRNYSFSPMLELL-NLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNW-IWRVSVVGLHCLNLSHN 340 (558)
Q Consensus 270 ------~~~~~~~~~~~~~~L~~L-~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~ls~n 340 (558)
.+. +.. +..+++|+.+ .+.+.....++. +..+++|++|++++|.+++..... +..+ ++|++|++++|
T Consensus 249 ~~~~~~~~l-~~~-l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~--~~L~~L~l~~~ 324 (594)
T 2p1m_B 249 VRPDVYSGL-SVA-LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC--PKLQRLWVLDY 324 (594)
T ss_dssp CCHHHHHHH-HHH-HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC--TTCCEEEEEGG
T ss_pred cchhhHHHH-HHH-HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC--CCcCEEeCcCc
Confidence 111 112 5567777777 343333334444 345677778888777755332222 2223 33777777766
Q ss_pred cccccCCC--C-CCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCc
Q 048194 341 FLVGFQAP--Y-SIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNR 417 (558)
Q Consensus 341 ~l~~~~~~--~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~ 417 (558)
+.+.... . .+++|+.|++..+.-.| ....+.+++. .+......+++|++|+++.+.
T Consensus 325 -~~~~~l~~l~~~~~~L~~L~L~~~~~~g------------~~~~~~l~~~--------~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 325 -IEDAGLEVLASTCKDLRELRVFPSEPFV------------MEPNVALTEQ--------GLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp -GHHHHHHHHHHHCTTCCEEEEECSCTTC------------SSCSSCCCHH--------HHHHHHHHCTTCCEEEEEESC
T ss_pred -cCHHHHHHHHHhCCCCCEEEEecCcccc------------cccCCCCCHH--------HHHHHHHhchhHHHHHHhcCC
Confidence 3211111 1 25666666663321000 0001111100 000000123445555555555
Q ss_pred CCccCCcccc-cCCCCCEEECC--C----CcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhc
Q 048194 418 PQGTVPKSIA-KCKMLEVLNLG--N----NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVG 490 (558)
Q Consensus 418 l~~~~~~~l~-~l~~L~~L~l~--~----n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 490 (558)
+++..+..+. .+++|+.|+++ + +.+++. |.. .........+++|+.|++++ .+++..+..++
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~~---------~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~ 452 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE-PLD---------IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG 452 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC-CTH---------HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCC-chh---------hHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence 5544333333 35556665555 2 222210 000 00001123345555555554 44433333333
Q ss_pred c-cCCCCeeeCcCCcCcccccccc-cCCCCCCeecCCCCcCcccchh-hhcCCCCCCEEeCcCCcCe
Q 048194 491 L-LKSLYGLNLSHNALTGSIPSSF-GNLKRLESLDLSMNNLSRAIPS-QLASLYFLSYLNLSYNQLE 554 (558)
Q Consensus 491 ~-l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~n~l~ 554 (558)
. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|++++..+. ....+++|++|++++|+++
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 3 5555566665555554433333 4455556666665555433332 2233555556666555553
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.4e-27 Score=229.96 Aligned_cols=251 Identities=22% Similarity=0.151 Sum_probs=203.8
Q ss_pred cccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcC-ccCCChhcc-------CCCCCcEEeccccccccccc
Q 048194 86 ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGF-AGQIPVQIS-------RMARLVALDFSFNQFSGSIS 157 (558)
Q Consensus 86 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~~~~~~~ 157 (558)
.+...++|++|++++|.+ . +|..+... |++|++++|.+ ...+|..+. ++++|++|++++|.+++.+|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 345677899999999999 3 77766654 89999999998 445777665 79999999999999997776
Q ss_pred chh-hcCCCCccEEEccCCccCccCCccccCC-----CCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCC
Q 048194 158 SIR-WEHLLNLVCAVLSDNSLDGSIPRSMFEF-----PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRT 231 (558)
Q Consensus 158 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~ 231 (558)
... +..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+ ..+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-------------------~~l 172 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-------------------RVF 172 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-------------------CCC
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-------------------ccC
Confidence 522 38999999999999999976 8777776 999999999999998777766 889
Q ss_pred CCCCEEEcccccCCcccCh-hh--hcCCCCCCEEEccCCccccc--CCCcccCCCCCCCEEecCCCCCCCCC---CCCCC
Q 048194 232 QKLTPLLLSSNNLNGTVQL-DK--ILSLGNLAKLDLSYNSLAVD--ESSRNYSFSPMLELLNLASCKLREIP---NLKNQ 303 (558)
Q Consensus 232 ~~L~~L~l~~n~l~~~~~~-~~--~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~l~~n~l~~l~---~~~~~ 303 (558)
++|++|++++|++.+.++. .. +..+++|++|++++|.+++. .+...+..+++|+.|++++|+++..+ .+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999998765321 22 37899999999999999842 22233457899999999999999644 26778
Q ss_pred CCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcc
Q 048194 304 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRG 366 (558)
Q Consensus 304 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~ 366 (558)
++|++|++++|+++ .+|..+. ++|++|++++|.+++.+....+++|+.|++++|.+++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~----~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP----AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC----SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc----CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 99999999999997 7777665 4599999999999988554458889999998888764
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.2e-24 Score=207.32 Aligned_cols=217 Identities=20% Similarity=0.248 Sum_probs=140.4
Q ss_pred CCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCcc
Q 048194 51 TDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAG 130 (558)
Q Consensus 51 ~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 130 (558)
.++|.|.|+.|...+.++.+++++++++. +|. .+. +++++|++++|.+... .+..|.++++|++|++++|.++.
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 75 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQT 75 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCe
Confidence 58999999988655667788888888774 333 222 5788888888887765 45567778888888888888774
Q ss_pred CCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCcccc
Q 048194 131 QIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSN 210 (558)
Q Consensus 131 ~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 210 (558)
..+..|.++++|++|++++|.+. .++...+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---- 150 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK---- 150 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----
T ss_pred eChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH----
Confidence 44445677777777777777777 3332245666667777776666665555555666666666666666553333
Q ss_pred ccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecC
Q 048194 211 ASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 290 (558)
Q Consensus 211 ~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 290 (558)
..+..+++|++|++++|.++...+.. +..+++|+.|+++
T Consensus 151 ----------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 151 ----------------------------------------GVFDKLTSLKELRLYNNQLKRVPEGA-FDKLTELKTLKLD 189 (270)
T ss_dssp ----------------------------------------TTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECC
T ss_pred ----------------------------------------hHccCCcccceeEecCCcCcEeChhH-hccCCCcCEEECC
Confidence 23344444444555544444333322 5555666666666
Q ss_pred CCCCCCCCC--CCCCCCCCEEecCCCccccc
Q 048194 291 SCKLREIPN--LKNQSQLQYLYLSENQISRE 319 (558)
Q Consensus 291 ~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~ 319 (558)
+|+++.+|. +..+++|+.|++++|++...
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 666666655 66777888888888876543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.2e-26 Score=234.28 Aligned_cols=235 Identities=23% Similarity=0.172 Sum_probs=172.6
Q ss_pred CCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEE
Q 048194 257 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 336 (558)
Q Consensus 257 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 336 (558)
++|++|++++|.+.+..+.. +..+++|+.|++++|.++.++.+..+++|++|++++|.+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------------------ 94 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------------------ 94 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------------------
T ss_pred CCccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------------------
Confidence 36667777776666544433 56666666666666666544445566666666666666543
Q ss_pred cCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCC
Q 048194 337 LSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGN 416 (558)
Q Consensus 337 ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n 416 (558)
.+. .++|+.|++++|.+++..+..+++|+.|++++|.++ +..|..++.+++|+.|++++|
T Consensus 95 --------l~~---~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 95 --------LLV---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT---------MLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp --------EEE---CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCC---------SGGGBCGGGGSSEEEEECTTS
T ss_pred --------CCC---CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCC---------CCCchhhcCCCCCCEEECCCC
Confidence 221 244555555555555444444556666667776666 345667788899999999999
Q ss_pred cCCccCCcccc-cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCC
Q 048194 417 RPQGTVPKSIA-KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSL 495 (558)
Q Consensus 417 ~l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 495 (558)
.+++..|..+. .+++|+.|++++|.+++..+.. .+++|+.|+|++|.+++..+ .+..+++|
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-----------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L 216 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGV 216 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----------------CCTTCCEEECCSSCCCEECG-GGGGGTTC
T ss_pred CCCCcChHHHhhhCCcccEEecCCCccccccccc-----------------cCCCCCEEECCCCCCCCCCH-hHcCCCCc
Confidence 99988888776 7999999999999998663322 27899999999999997554 58999999
Q ss_pred CeeeCcCCcCcccccccccCCCCCCeecCCCCcCc-ccchhhhcCCCCCCEEeCc
Q 048194 496 YGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS-RAIPSQLASLYFLSYLNLS 549 (558)
Q Consensus 496 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~ 549 (558)
+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 217 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999999 47888999999999999999998 6778888888888888775
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.7e-25 Score=228.46 Aligned_cols=235 Identities=20% Similarity=0.181 Sum_probs=132.3
Q ss_pred CCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeC
Q 048194 117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQL 196 (558)
Q Consensus 117 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 196 (558)
+|++|+|++|.+++..|..|..+++|++|+|++|.+++..+ +..+++|++|++++|.+++. | ..++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCC-C----CCCCcCEEEC
Confidence 45555555555554444455555555555555555543222 44555555555555555422 1 1255666666
Q ss_pred ccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCc
Q 048194 197 ANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSR 276 (558)
Q Consensus 197 ~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 276 (558)
++|.+++..+ ..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..
T Consensus 107 ~~N~l~~~~~----------------------~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 107 ANNNISRVSC----------------------SRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp CSSCCCCEEE----------------------CCCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cCCcCCCCCc----------------------cccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 6665554332 2334566666666666533 2234555666666666666666555544
Q ss_pred ccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCE
Q 048194 277 NYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRF 356 (558)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~ 356 (558)
....+++|+.|++++|.++.+|....+++|++|++++|.+++. |..+..++. |+.|++++|.++
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~--L~~L~Ls~N~l~------------- 227 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAG--VTWISLRNNKLV------------- 227 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTT--CSEEECTTSCCC-------------
T ss_pred HhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCC-CHhHcCCCC--ccEEEecCCcCc-------------
Confidence 2335677777777777777666655678888888888888753 333444333 444444444433
Q ss_pred EEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCC-ccCCcccccCCCCCEE
Q 048194 357 IDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQ-GTVPKSIAKCKMLEVL 435 (558)
Q Consensus 357 L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L 435 (558)
.+|..+..+++|+.|++++|.+. +.+|..+..++.|+.+
T Consensus 228 ----------------------------------------~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 228 ----------------------------------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp ----------------------------------------EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 23444555666777777777766 4555566666666666
Q ss_pred ECC
Q 048194 436 NLG 438 (558)
Q Consensus 436 ~l~ 438 (558)
++.
T Consensus 268 ~~~ 270 (487)
T 3oja_A 268 AKQ 270 (487)
T ss_dssp HHH
T ss_pred ecc
Confidence 654
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.1e-28 Score=259.69 Aligned_cols=417 Identities=16% Similarity=0.130 Sum_probs=239.3
Q ss_pred CCEEEEEcCCCCcccccc---C----------cccccCCCCCCEEECCCCCCCCCccchhhc-CCCCCCEEeCcCC-cCc
Q 048194 65 GHVIGLDLSTESISGGIE---N----------AAILFSLHYLRSLNLARTSFNGTQISSKLA-NISSLTYLNLSDA-GFA 129 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~---~----------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n-~l~ 129 (558)
+++++++++++....... . ......+++|++|++++|.+++. .+..+. .+++|++|++++| .++
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCC
Confidence 678999999875322111 0 00234688999999999998776 455554 7999999999999 555
Q ss_pred cC-CChhccCCCCCcEEecccccccccccc---hhhcCCCCccEEEccCCc--cCcc-CCccccCCCCCCEEeCccccCC
Q 048194 130 GQ-IPVQISRMARLVALDFSFNQFSGSISS---IRWEHLLNLVCAVLSDNS--LDGS-IPRSMFEFPMLQQLQLANNQFG 202 (558)
Q Consensus 130 ~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~~~ 202 (558)
.. ++..+.++++|++|++++|.+++..+. .....+++|++|++++|. +... ++.....+++|++|++++|...
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 32 444555899999999999998754322 123467899999999986 2211 1222345799999999998332
Q ss_pred CCCCccccccccchhhhhchhhhcccCCCCCCCEEEccccc-------CCcccChhhhcCCCCCCEE-EccCCcccccCC
Q 048194 203 GSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNN-------LNGTVQLDKILSLGNLAKL-DLSYNSLAVDES 274 (558)
Q Consensus 203 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~ 274 (558)
+.++..+ ..+++|++|+++.+. +. .++ ..+.++++|+.| .+...... ..+
T Consensus 225 ~~l~~~~-------------------~~~~~L~~L~l~~~~~~~~~~~~~-~l~-~~l~~~~~L~~Ls~~~~~~~~-~l~ 282 (594)
T 2p1m_B 225 EKLATLL-------------------QRAPQLEELGTGGYTAEVRPDVYS-GLS-VALSGCKELRCLSGFWDAVPA-YLP 282 (594)
T ss_dssp HHHHHHH-------------------HHCTTCSEEECSBCCCCCCHHHHH-HHH-HHHHTCTTCCEEECCBTCCGG-GGG
T ss_pred HHHHHHH-------------------hcCCcceEcccccccCccchhhHH-HHH-HHHhcCCCcccccCCcccchh-hHH
Confidence 2244333 678899999976543 32 222 357889999999 34432221 111
Q ss_pred CcccCCCCCCCEEecCCCCCCC--CCC-CCCCCCCCEEecCCCcccccCChhH-HhhccccceEEEcCC---------cc
Q 048194 275 SRNYSFSPMLELLNLASCKLRE--IPN-LKNQSQLQYLYLSENQISREIPNWI-WRVSVVGLHCLNLSH---------NF 341 (558)
Q Consensus 275 ~~~~~~~~~L~~L~l~~n~l~~--l~~-~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~ls~---------n~ 341 (558)
..+..+++|++|++++|.++. ++. +..+++|++|++++| +.+.....+ ..++ +|++|++++ +.
T Consensus 283 -~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~--~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 283 -AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK--DLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp -GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT--TCCEEEEECSCTTCSSCSSC
T ss_pred -HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC--CCCEEEEecCcccccccCCC
Confidence 113467899999999999772 333 668899999999998 443222222 2334 499999944 33
Q ss_pred ccccCCC---CCCCccCEEEcccccCcccCC----CCCCCCcEEEcc--C----CcccccCCCCCccCCCCCCCCCCCCC
Q 048194 342 LVGFQAP---YSIPALRFIDLISNQLRGNIH----QLPNNPIYIDFS--N----NNFTSSIPADTVNGTLPDTFPRNCLL 408 (558)
Q Consensus 342 l~~~~~~---~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~l~l~--~----n~~~~~~~~~~~~~~~p~~~~~~~~L 408 (558)
+++.... ..+++|+.|.+..+.+++... ...++|+.|+++ + +.+++. |. ...++..+..+++|
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~---~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE-PL---DIGFGAIVEHCKDL 434 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC-CT---HHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC-ch---hhHHHHHHhhCCCc
Confidence 4332211 127888888877777764322 123456666666 2 222200 00 00011112334455
Q ss_pred CEEECcCCcCCccCCccccc-CCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194 409 QTLDLNGNRPQGTVPKSIAK-CKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE 487 (558)
Q Consensus 409 ~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 487 (558)
+.|++++ .+++..+..+.. +++|+.|++++|.+++..+.. ....+++|++|++++|.+++....
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~--------------l~~~~~~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH--------------VLSGCDSLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH--------------HHHHCTTCCEEEEESCSCCHHHHH
T ss_pred cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHH--------------HHhcCCCcCEEECcCCCCcHHHHH
Confidence 5555544 444333333333 555555555555544321111 112345555555555555432222
Q ss_pred -hhcccCCCCeeeCcCCcCcccccccc-cCCCCCCeecCCCC
Q 048194 488 -DVGLLKSLYGLNLSHNALTGSIPSSF-GNLKRLESLDLSMN 527 (558)
Q Consensus 488 -~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~N 527 (558)
.+..+++|++|++++|+++......+ ..+++|+...+..+
T Consensus 500 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 500 ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 22335555555555555543322222 33444444444433
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.6e-23 Score=198.83 Aligned_cols=117 Identities=22% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCCCCCCCCEEECcCCcCCcc-CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccce----EEE
Q 048194 401 TFPRNCLLQTLDLNGNRPQGT-VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFT----SID 475 (558)
Q Consensus 401 ~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~----~L~ 475 (558)
.+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+. .+++|+ +|+
T Consensus 119 ~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------~l~~L~~l~l~L~ 183 (276)
T 2z62_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR---------------VLHQMPLLNLSLD 183 (276)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH---------------HHHTCTTCCEEEE
T ss_pred hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh---------------hhhhccccceeee
Confidence 456666677777777776653 466666677777777777766654333221 133333 666
Q ss_pred CCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194 476 FSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI 533 (558)
Q Consensus 476 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 533 (558)
+++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++++..
T Consensus 184 ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 184 LSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 666666654433333 335666666666666444444566666666666666665443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.7e-22 Score=194.01 Aligned_cols=202 Identities=25% Similarity=0.167 Sum_probs=148.0
Q ss_pred cCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCE
Q 048194 278 YSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRF 356 (558)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~ 356 (558)
+..+++++.++++++.++.+|. + .++++.|++++|.+++..+..+..+.. |++|++++|.+++......+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTR--LTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTT--CCEEECTTSCCCEEECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCC--CCEEECCCCccCcccCCCCCCcCCE
Confidence 4556777778888777777776 3 267888888888887766666766655 7888888877776655444666666
Q ss_pred EEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEE
Q 048194 357 IDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN 436 (558)
Q Consensus 357 L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 436 (558)
|++++|++. .+|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 82 L~Ls~N~l~-------------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 82 LDLSHNQLQ-------------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp EECCSSCCS-------------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred EECCCCcCC-------------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 666666654 4566667777788888888888766667777888888888
Q ss_pred CCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCC
Q 048194 437 LGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNL 516 (558)
Q Consensus 437 l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 516 (558)
+++|.+++..+..+. .+++|+.|++++|+++...+..|..+++|+.|++++|+++ .+|..+..+
T Consensus 131 L~~N~l~~~~~~~~~---------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~ 194 (290)
T 1p9a_G 131 LKGNELKTLPPGLLT---------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194 (290)
T ss_dssp CTTSCCCCCCTTTTT---------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred CCCCCCCccChhhcc---------------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence 888887755444332 2677888888888887666666777888888888888887 677777777
Q ss_pred CCCCeecCCCCcCc
Q 048194 517 KRLESLDLSMNNLS 530 (558)
Q Consensus 517 ~~L~~L~L~~N~l~ 530 (558)
.+|+.|+|++|++.
T Consensus 195 ~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 195 HLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCSEEECCSCCBC
T ss_pred ccCCeEEeCCCCcc
Confidence 88888888888775
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.8e-22 Score=192.94 Aligned_cols=207 Identities=20% Similarity=0.249 Sum_probs=169.0
Q ss_pred CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEE
Q 048194 91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA 170 (558)
Q Consensus 91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 170 (558)
++|++|++++|.+.+. .+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+. .+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEE
T ss_pred CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccccEE
Confidence 4799999999998875 556788999999999999999877777889999999999999999844444 68889999999
Q ss_pred EccCCccCccCCccccCCCCCCEEeCccccCCCC-CCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC
Q 048194 171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGS-IPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ 249 (558)
Q Consensus 171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 249 (558)
++++|.+.+..+..+..+++|++|++++|.+++. +|..+ ..+++|++|++++|+++ .++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-------------------~~l~~L~~L~Ls~N~l~-~~~ 165 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-------------------SNLTNLEHLDLSSNKIQ-SIY 165 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-------------------GGCTTCCEEECCSSCCC-EEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh-------------------ccCCCCCEEECCCCCCC-cCC
Confidence 9999999876666788999999999999998763 46655 77889999999999988 455
Q ss_pred hhhhcCCCCCC----EEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCC
Q 048194 250 LDKILSLGNLA----KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIP 321 (558)
Q Consensus 250 ~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~ 321 (558)
...+..+++|+ +|++++|.+.+..+.. +. ..+|+.|++++|+++.+|. +..+++|+.|++++|++.+..+
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTS-SC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccc-cC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 45566555555 8999999998655443 33 3489999999999998887 6889999999999999876554
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.1e-23 Score=200.71 Aligned_cols=225 Identities=19% Similarity=0.167 Sum_probs=154.3
Q ss_pred CCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcC
Q 048194 259 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 338 (558)
Q Consensus 259 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls 338 (558)
+..+++..+.+.+... ...+++|+.|++.+|.++.++.+..+++|++|++++|.+.+ + ..+..+.. |++|+++
T Consensus 21 l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~--L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTN--LTYLILT 93 (272)
T ss_dssp HHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTT--CCEEECT
T ss_pred HHHHHhcCcccccccc---cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-c-hhhcCCCC--CCEEECC
Confidence 3445555555543322 44677888888888888888878888888888888888864 2 24444443 6666666
Q ss_pred CccccccCCC--CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCC
Q 048194 339 HNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGN 416 (558)
Q Consensus 339 ~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n 416 (558)
+|.+++..+. ..+++|++|++++|+++ +..+..+..+++|++|++++|
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------------~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQ------------------------------SLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCC------------------------------CCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCC------------------------------ccCHHHhccCCCCCEEECCCC
Confidence 6666655443 22555555555555443 233445677778888888888
Q ss_pred cCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCC
Q 048194 417 RPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLY 496 (558)
Q Consensus 417 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 496 (558)
.+++..+..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..+..++.+++|+
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK---------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC---------------CccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 888666666778888888888888887655544433 77888888888888877766777888888
Q ss_pred eeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCC
Q 048194 497 GLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYF 542 (558)
Q Consensus 497 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 542 (558)
.|++++|++.+. ++.|+.|+++.|+++|.+|..++.+..
T Consensus 209 ~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 209 YIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp EEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred EEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 888888877643 456778888888888888877766554
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=5.9e-22 Score=188.64 Aligned_cols=201 Identities=24% Similarity=0.251 Sum_probs=130.4
Q ss_pred CCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCc
Q 048194 118 LTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLA 197 (558)
Q Consensus 118 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 197 (558)
.++++++++.++ .+|..+. +++++|++++|.++ .++...+.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 344444444444 3333222 34444444444444 2221134445555555555555443333334556666666666
Q ss_pred cccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcc
Q 048194 198 NNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRN 277 (558)
Q Consensus 198 ~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 277 (558)
+|.+++..+..+ ..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..
T Consensus 94 ~n~l~~~~~~~~-------------------~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~- 152 (270)
T 2o6q_A 94 DNKLQALPIGVF-------------------DQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGV- 152 (270)
T ss_dssp SSCCCCCCTTTT-------------------TTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT-
T ss_pred CCcCCcCCHhHc-------------------ccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhH-
Confidence 666654443333 55666666666666666 444456778888999999999888655444
Q ss_pred cCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCcccccc
Q 048194 278 YSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF 345 (558)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 345 (558)
+..+++|+.|++++|+++.++. +..+++|++|++++|++++..+..+..++. |+.|++++|.+...
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK--LKMLQLQENPWDCT 220 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT--CCEEECCSSCBCCS
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC--CCEEEecCCCeeCC
Confidence 8889999999999999998887 889999999999999998665555666665 99999999988643
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.6e-22 Score=191.03 Aligned_cols=203 Identities=21% Similarity=0.184 Sum_probs=166.9
Q ss_pred cccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCC
Q 048194 86 ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLL 165 (558)
Q Consensus 86 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 165 (558)
.+..++++++++++++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.++ .++. .+.++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCT
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC--CCCCC
Confidence 36778888999998888876 555443 68899999999998777788889999999999999888 4443 36788
Q ss_pred CccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCC
Q 048194 166 NLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN 245 (558)
Q Consensus 166 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~ 245 (558)
+|++|++++|.+. .+|..+..+++|++|++++|++++..+..+ ..+++|++|++++|+++
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-------------------~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-------------------RGLGELQELYLKGNELK 137 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-------------------TTCTTCCEEECTTSCCC
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH-------------------cCCCCCCEEECCCCCCC
Confidence 9999999999888 678888889999999999999886666655 78889999999999888
Q ss_pred cccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCccc
Q 048194 246 GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQIS 317 (558)
Q Consensus 246 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~ 317 (558)
.++...+..+++|++|++++|+++...+ ..+..+++|+.|++++|+++.+|. +....+|+.+++++|++.
T Consensus 138 -~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 138 -TLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -CCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred -ccChhhcccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 6666778888999999999999885444 337788899999999999998888 777788999999998875
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.5e-21 Score=183.76 Aligned_cols=179 Identities=22% Similarity=0.203 Sum_probs=121.0
Q ss_pred cCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCC
Q 048194 354 LRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLE 433 (558)
Q Consensus 354 L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 433 (558)
.+.++++++.+.......+.+++.|++++|.+. +..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 16 ~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLA---------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCC---------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CeEEecCCCCccccCCCCCCCCCEEEccCCCcC---------ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 344555555544333334455666666666665 23444567777777777777777766666677777777
Q ss_pred EEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccc
Q 048194 434 VLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF 513 (558)
Q Consensus 434 ~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 513 (558)
+|++++|.+++..+..+.. +++|++|++++|.+++..+..|..+++|++|++++|++++..+..|
T Consensus 87 ~L~L~~n~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDH---------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151 (251)
T ss_dssp EEECTTSCCCCCCTTTTTT---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred EEECCCCcccccChhHhcc---------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc
Confidence 7777777777554444332 6777777777777776666666777777777777777775555567
Q ss_pred cCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeee
Q 048194 514 GNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556 (558)
Q Consensus 514 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 556 (558)
..+++|+.|+|++|++++..+..+..+++|++|++++|++++.
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777777777777777766666777777777777777777653
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.4e-21 Score=186.12 Aligned_cols=220 Identities=21% Similarity=0.173 Sum_probs=163.8
Q ss_pred CCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccc
Q 048194 283 MLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISN 362 (558)
Q Consensus 283 ~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n 362 (558)
.+..+++.++.+..+.....+++|+.|++++|.+.. ++ .+..++. |++|++++|.+++......+++|++|++++|
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~--L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQ-GIQYLPN--VRYLALGGNKLHDISALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC-CT-TGGGCTT--CCEEECTTSCCCCCGGGTTCTTCCEEECTTS
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCccc-cc-ccccCCC--CcEEECCCCCCCCchhhcCCCCCCEEECCCC
Confidence 344455555555555445556667777777776642 22 2433333 6666666666655433233555555555555
Q ss_pred cCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcC
Q 048194 363 QLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQF 442 (558)
Q Consensus 363 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 442 (558)
. ++ +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 96 ~---------------------l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 96 Q---------------------LQ---------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp C---------------------CC---------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred c---------------------cC---------ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc
Confidence 4 44 23445578889999999999999987777889999999999999999
Q ss_pred cccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCee
Q 048194 443 SDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESL 522 (558)
Q Consensus 443 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 522 (558)
++..+..+.. +++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|+.|
T Consensus 146 ~~~~~~~~~~---------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 146 QSLPKGVFDK---------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp CCCCTTTTTT---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CccCHHHhcc---------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 8666554433 8899999999999998877778999999999999999998777778999999999
Q ss_pred cCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194 523 DLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ 558 (558)
Q Consensus 523 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 558 (558)
++++|++.+. +++|+.+++++|+++|.||
T Consensus 211 ~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 211 WLHDNPWDCT-------CPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp ECCSSCBCCC-------TTTTHHHHHHHHHTGGGBB
T ss_pred EccCCCcccc-------CcHHHHHHHHHHhCCCccc
Confidence 9999998754 4578899999999999886
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.3e-21 Score=184.23 Aligned_cols=192 Identities=22% Similarity=0.262 Sum_probs=144.4
Q ss_pred CCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCcc
Q 048194 51 TDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAG 130 (558)
Q Consensus 51 ~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 130 (558)
.+|+.|.|..|.. ..++++++++.++. +|. .+. +++++|++++|.+.+. .+..+.++++|++|++++|.+++
T Consensus 2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 2 KTCETVTGCTCNE--GKKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp --CHHHHSSEEEG--GGTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred ccCCCCCceEcCC--CCeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence 3678899999953 34568888888874 333 232 5889999999998886 67778899999999999999987
Q ss_pred CCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCcccc
Q 048194 131 QIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSN 210 (558)
Q Consensus 131 ~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 210 (558)
..+..|.++++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~- 151 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF- 151 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-
T ss_pred cCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc-
Confidence 77777888999999999999888 4433257788888888888888886555566788888888888888875555444
Q ss_pred ccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccc
Q 048194 211 ASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAV 271 (558)
Q Consensus 211 ~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 271 (558)
..+++|++|++++|.++ .++...+..+++|++|++++|.+..
T Consensus 152 ------------------~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 152 ------------------DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ------------------TTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ------------------CcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 66777888888887777 4454566677777777777776653
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2e-21 Score=189.00 Aligned_cols=226 Identities=21% Similarity=0.189 Sum_probs=167.6
Q ss_pred CCCEEecCCCcccccC-ChhHHhhccccceEEEcCCccccccCCC----CCCCccCEEEcccccCcccCC-------CCC
Q 048194 305 QLQYLYLSENQISREI-PNWIWRVSVVGLHCLNLSHNFLVGFQAP----YSIPALRFIDLISNQLRGNIH-------QLP 372 (558)
Q Consensus 305 ~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~L~~L~l~~n~~~~~~~-------~~~ 372 (558)
.++.+.+.++.+.... .........++|++|++++|.+.+..+. ..+++|++|++++|.+.+..+ ...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4666777666654321 1111122223478888888877765544 237788888888888876443 225
Q ss_pred CCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCcc--C--CcccccCCCCCEEECCCCcCcccCCc
Q 048194 373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGT--V--PKSIAKCKMLEVLNLGNNQFSDKFPC 448 (558)
Q Consensus 373 ~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~i~~~~p~ 448 (558)
++|++|++++|.+. +..|..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++.. +.
T Consensus 145 ~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~ 214 (310)
T 4glp_A 145 PGLKVLSIAQAHSP---------AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TG 214 (310)
T ss_dssp SCCCEEEEECCSSC---------CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HH
T ss_pred cCCCEEEeeCCCcc---------hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HH
Confidence 68888888888887 35567788999999999999998752 2 23347899999999999998621 11
Q ss_pred cccCceeeccccchhhhhhhccceEEECCCCcccccCchhhccc---CCCCeeeCcCCcCcccccccccCCCCCCeecCC
Q 048194 449 SLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLL---KSLYGLNLSHNALTGSIPSSFGNLKRLESLDLS 525 (558)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 525 (558)
........+++|++|++++|.+++..|..++.+ ++|++|++++|+++ .+|..+. ++|+.|+|+
T Consensus 215 -----------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 215 -----------VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp -----------HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred -----------HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 011123557999999999999998878777776 79999999999999 7888775 899999999
Q ss_pred CCcCcccchhhhcCCCCCCEEeCcCCcCeee
Q 048194 526 MNNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556 (558)
Q Consensus 526 ~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 556 (558)
+|++++. |. +..+++|++|++++|+++++
T Consensus 281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp SCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred CCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence 9999863 43 67889999999999999874
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.2e-23 Score=205.51 Aligned_cols=263 Identities=19% Similarity=0.198 Sum_probs=186.4
Q ss_pred CCCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCC--CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCc
Q 048194 50 STDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSL--HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAG 127 (558)
Q Consensus 50 ~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 127 (558)
+..|..|.++.|++ ..+++++++++.+.. . .+..+ ++++.|++++|.+.+. .+. +..+++|++|++++|.
T Consensus 33 ~~vc~~W~~~~~~~-~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 33 SGVCKRWYRLASDE-SLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLSNSV 104 (336)
T ss_dssp TSSCHHHHHHHTCS-TTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEECTTCE
T ss_pred HHHHHHHHHHhcCc-hhheeeccccccCCH---H--HHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEccCCC
Confidence 34455698887753 567889999887762 2 45556 8899999999988775 444 5678999999999999
Q ss_pred CccC-CChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCC-ccCcc-CCccccCCCCCCEEeCccc-cCCC
Q 048194 128 FAGQ-IPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN-SLDGS-IPRSMFEFPMLQQLQLANN-QFGG 203 (558)
Q Consensus 128 l~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~~~~ 203 (558)
+++. ++..+..+++|++|++++|.+++..+. .++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 8765 777888999999999999988865554 5778999999999998 56653 5666778899999999999 7764
Q ss_pred C-CCccccccccchhhhhchhhhcccCCCC-CCCEEEcccc--cCCc-ccChhhhcCCCCCCEEEccCCc-ccccCCCcc
Q 048194 204 S-IPRFSNASSSALDTQIKRVYSCLGLRTQ-KLTPLLLSSN--NLNG-TVQLDKILSLGNLAKLDLSYNS-LAVDESSRN 277 (558)
Q Consensus 204 ~-~~~~~~~~~~~l~~li~~~~~~~~~~~~-~L~~L~l~~n--~l~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 277 (558)
. ++..+ ..++ +|++|++++| .+++ .++ ..+..+++|++|++++|. +++..+..
T Consensus 184 ~~~~~~~-------------------~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~- 242 (336)
T 2ast_B 184 KHVQVAV-------------------AHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQE- 242 (336)
T ss_dssp HHHHHHH-------------------HHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGG-
T ss_pred HHHHHHH-------------------HhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHH-
Confidence 3 33332 6677 8999999988 4542 333 456778889999999888 55555544
Q ss_pred cCCCCCCCEEecCCCC-CC--CCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCC
Q 048194 278 YSFSPMLELLNLASCK-LR--EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQA 347 (558)
Q Consensus 278 ~~~~~~L~~L~l~~n~-l~--~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 347 (558)
+..+++|+.|++++|. ++ .+..+..+++|+.|++++| ++......+. . .+..|++++|.+++..+
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~--~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--E--ALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--H--HSTTSEESCCCSCCTTC
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--h--hCcceEEecccCccccC
Confidence 6677888888888884 33 2222667778888888877 4322212121 1 24555556666555443
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.7e-23 Score=203.95 Aligned_cols=267 Identities=19% Similarity=0.204 Sum_probs=146.8
Q ss_pred EEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCC----CcccCCCC-CCCEEecCCCCCCCCCC--CCC-----C
Q 048194 236 PLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES----SRNYSFSP-MLELLNLASCKLREIPN--LKN-----Q 303 (558)
Q Consensus 236 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~-~L~~L~l~~n~l~~l~~--~~~-----~ 303 (558)
.+++++|.++|.++ ..+...++|++|++++|.+.+..+ .. +..++ +|++|++++|+++.... +.. .
T Consensus 2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQA-FANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHH-HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 35667777775554 344555557777777777765443 22 44555 66777777766664322 222 2
Q ss_pred CCCCEEecCCCcccccCChhHHhh-cc--ccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEc
Q 048194 304 SQLQYLYLSENQISREIPNWIWRV-SV--VGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDF 380 (558)
Q Consensus 304 ~~L~~L~l~~n~l~~~~~~~~~~~-~~--~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l 380 (558)
++|++|++++|.+++..+..+... .. ++|++|++++|.+++.....- ...+...+.+|++|++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--------------~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF--------------KQAFSNLPASITSLNL 145 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH--------------HHHHTTSCTTCCEEEC
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH--------------HHHHHhCCCceeEEEc
Confidence 667777777777665555544432 00 235555555555544332100 0000000123444444
Q ss_pred cCCcccccCCCCCccCCCCCCCCCCC-CCCEEECcCCcCCccCCccc----ccC-CCCCEEECCCCcCcccCCccccCce
Q 048194 381 SNNNFTSSIPADTVNGTLPDTFPRNC-LLQTLDLNGNRPQGTVPKSI----AKC-KMLEVLNLGNNQFSDKFPCSLYDAP 454 (558)
Q Consensus 381 ~~n~~~~~~~~~~~~~~~p~~~~~~~-~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~i~~~~p~~~~~~~ 454 (558)
++|.+++... ..++..+..++ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+++.....+
T Consensus 146 s~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l---- 216 (362)
T 3goz_A 146 RGNDLGIKSS-----DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL---- 216 (362)
T ss_dssp TTSCGGGSCH-----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH----
T ss_pred cCCcCCHHHH-----HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH----
Confidence 4444331100 11222233333 68888888888876555433 344 488888888888765322211
Q ss_pred eeccccchhhhhh-hccceEEECCCCcccccCch----hhcccCCCCeeeCcCCcCccc-------ccccccCCCCCCee
Q 048194 455 ITIKGLDIKLQKI-LNIFTSIDFSTNNFKGPILE----DVGLLKSLYGLNLSHNALTGS-------IPSSFGNLKRLESL 522 (558)
Q Consensus 455 ~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~-------~~~~l~~l~~L~~L 522 (558)
...+.. .++|++|+|++|.+++..+. .+..+++|++|++++|.+.+. ++..+..+++|+.|
T Consensus 217 -------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~L 289 (362)
T 3goz_A 217 -------AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289 (362)
T ss_dssp -------HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEE
T ss_pred -------HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEE
Confidence 011122 35788888888888765442 245567888888888874322 33456677778888
Q ss_pred cCCCCcCcccch
Q 048194 523 DLSMNNLSRAIP 534 (558)
Q Consensus 523 ~L~~N~l~~~~~ 534 (558)
|+++|++....+
T Consensus 290 dL~~N~l~~~~~ 301 (362)
T 3goz_A 290 DKNGKEIHPSHS 301 (362)
T ss_dssp CTTSCBCCGGGC
T ss_pred ecCCCcCCCcch
Confidence 888888775543
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.2e-21 Score=185.53 Aligned_cols=107 Identities=24% Similarity=0.300 Sum_probs=80.9
Q ss_pred CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194 402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF 481 (558)
Q Consensus 402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 481 (558)
+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ + ..+++|+.|++++|.+
T Consensus 125 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l---------------~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L---------------ANLSKLTTLKADDNKI 185 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G---------------TTCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h---------------cCCCCCCEEECCCCcc
Confidence 5667778888888888875433 7778888888888888764322 2 2377888888888888
Q ss_pred cccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194 482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 76433 788889999999999988544 37888899999999998874
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.4e-21 Score=185.43 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=122.9
Q ss_pred ccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCC
Q 048194 87 LFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLN 166 (558)
Q Consensus 87 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 166 (558)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+. .++ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVS--AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCG--GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cch--hhcCCCC
Confidence 3456677777777776665 33 46677777777777777763 333 677777777777777766 333 3666777
Q ss_pred ccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCc
Q 048194 167 LVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG 246 (558)
Q Consensus 167 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~ 246 (558)
|++|++++|.+++ ++ .+..+++|++|++++|.+++..+ + ..+++|++|++++|.+++
T Consensus 109 L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l-------------------~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 109 IKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--L-------------------AGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--G-------------------GGCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--c-------------------cCCCCccEEEccCCcCCC
Confidence 7777777777664 33 26667777777777777664322 2 556667777777776653
Q ss_pred ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCccc
Q 048194 247 TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 317 (558)
Q Consensus 247 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~ 317 (558)
++. +..+++|++|++++|.+++..+ +..+++|+.|++++|+++.++.+..+++|+.|++++|+++
T Consensus 166 -~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 166 -LTP--LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -CGG--GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred -Chh--hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 332 5666666666666666654332 4556666666666666665555666666666666666664
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=190.34 Aligned_cols=208 Identities=22% Similarity=0.211 Sum_probs=105.6
Q ss_pred CCCccEEEccCCccCccCCccc--cCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEccc
Q 048194 164 LLNLVCAVLSDNSLDGSIPRSM--FEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSS 241 (558)
Q Consensus 164 l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~ 241 (558)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+..-. ..+ ..+++|++|++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~-----------~~~----~~~~~L~~L~Ls~ 154 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE-----------LQQ----WLKPGLKVLSIAQ 154 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH-----------HHT----TBCSCCCEEEEEC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH-----------HHh----hhccCCCEEEeeC
Confidence 3456666666666666666666 6677777777777777654431100 000 3455666666666
Q ss_pred ccCCcccChhhhcCCCCCCEEEccCCccccc---CCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccc
Q 048194 242 NNLNGTVQLDKILSLGNLAKLDLSYNSLAVD---ESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 318 (558)
Q Consensus 242 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~ 318 (558)
|.+. .++...+..+++|++|++++|++.+. .+...+..+++|++|++++|+++.++.
T Consensus 155 n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------------------- 214 (310)
T 4glp_A 155 AHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG------------------- 214 (310)
T ss_dssp CSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-------------------
T ss_pred CCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-------------------
Confidence 6665 33334555666666666666655431 111112333444444444444433222
Q ss_pred cCChh-HHhhccccceEEEcCCccccccCCC--CC---CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCC
Q 048194 319 EIPNW-IWRVSVVGLHCLNLSHNFLVGFQAP--YS---IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPAD 392 (558)
Q Consensus 319 ~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~--~~---~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 392 (558)
.+.. +..+.. |++|++++|.+++..+. .. +++|++|++++|+++
T Consensus 215 -~~~~l~~~l~~--L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--------------------------- 264 (310)
T 4glp_A 215 -VCAALAAAGVQ--PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--------------------------- 264 (310)
T ss_dssp -HHHHHHHHTCC--CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC---------------------------
T ss_pred -HHHHHHhcCCC--CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC---------------------------
Confidence 0011 122222 55555555554443211 11 245555555555544
Q ss_pred CccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcc
Q 048194 393 TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD 444 (558)
Q Consensus 393 ~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 444 (558)
.+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 265 ----~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 265 ----QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ----SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ----chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 2333332 4677777777777643 22 4566777777777777654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4.3e-21 Score=179.21 Aligned_cols=196 Identities=15% Similarity=0.140 Sum_probs=140.9
Q ss_pred CCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCc-CccCCChhccCCCCCcEEeccc-ccccccccchhhcCCCCccE
Q 048194 92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAG-FAGQIPVQISRMARLVALDFSF-NQFSGSISSIRWEHLLNLVC 169 (558)
Q Consensus 92 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~ 169 (558)
+|++|++++|.+.+. .+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.++ .++...+.++++|++
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 788888888888775 45578888888888888886 7755555788888888888887 8887 443335777888888
Q ss_pred EEccCCccCccCCccccCCCCCC---EEeCccc-cCCCCCCccccccccchhhhhchhhhcccCCCCCCC-EEEcccccC
Q 048194 170 AVLSDNSLDGSIPRSMFEFPMLQ---QLQLANN-QFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLT-PLLLSSNNL 244 (558)
Q Consensus 170 L~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~-~L~l~~n~l 244 (558)
|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+ ..+++|+ +|++++|.+
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-------------------~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-------------------QGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-------------------TTTBSSEEEEECCSCCC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc-------------------cchhcceeEEEcCCCCC
Confidence 8888888774 565 77777777 8888888 7765444444 6677788 888888877
Q ss_pred CcccChhhhcCCCCCCEEEccCCc-ccccCCCcccCCC-CCCCEEecCCCCCCCCCCCCCCCCCCEEecCCC
Q 048194 245 NGTVQLDKILSLGNLAKLDLSYNS-LAVDESSRNYSFS-PMLELLNLASCKLREIPNLKNQSQLQYLYLSEN 314 (558)
Q Consensus 245 ~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n 314 (558)
+ .++...+.. ++|++|++++|+ ++...+.. +..+ ++|+.|++++|+++.+|.. .+++|+.|+++++
T Consensus 169 ~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 T-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp C-EECTTTTTT-CEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC
T ss_pred c-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCCccccCChh-HhccCceeeccCc
Confidence 7 666555555 677777777774 66443333 6666 7777777777777777653 5667777777665
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.9e-22 Score=200.73 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=54.6
Q ss_pred EECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCC----hhccCCC-CCcEEecccccccccccchhhcCC-----C
Q 048194 96 LNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIP----VQISRMA-RLVALDFSFNQFSGSISSIRWEHL-----L 165 (558)
Q Consensus 96 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~l-----~ 165 (558)
++++.|.+++. +|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+. .+..+ +
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCT
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCC
Confidence 44555555554 44444444456666666666554444 4455555 566666666655533222 22222 5
Q ss_pred CccEEEccCCccCccCCcccc----CC-CCCCEEeCccccCCCCC
Q 048194 166 NLVCAVLSDNSLDGSIPRSMF----EF-PMLQQLQLANNQFGGSI 205 (558)
Q Consensus 166 ~L~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~l~~n~~~~~~ 205 (558)
+|++|++++|.+++..+..+. .+ ++|++|++++|.+++..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 555555555555544333222 22 55666666666655433
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3e-22 Score=201.26 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=58.5
Q ss_pred CCCCCCCEEECcCCcCCc-----cCCcccccCCCCCEEECCCCcCc----ccCCccccCceeeccccchhhhhhhccceE
Q 048194 403 PRNCLLQTLDLNGNRPQG-----TVPKSIAKCKMLEVLNLGNNQFS----DKFPCSLYDAPITIKGLDIKLQKILNIFTS 473 (558)
Q Consensus 403 ~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~i~----~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~ 473 (558)
..+++|++|++++|.++. ..+..+..+++|++|++++|.++ +.+|.. +..+++|++
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~---------------l~~~~~L~~ 248 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA---------------LKSWPNLRE 248 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH---------------GGGCTTCCE
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH---------------HccCCCcCE
Confidence 344456666666666652 12225555666666666666654 112211 122455555
Q ss_pred EECCCCccccc----Cchhhc--ccCCCCeeeCcCCcCcc----cccccc-cCCCCCCeecCCCCcCcccc
Q 048194 474 IDFSTNNFKGP----ILEDVG--LLKSLYGLNLSHNALTG----SIPSSF-GNLKRLESLDLSMNNLSRAI 533 (558)
Q Consensus 474 L~Ls~n~l~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~L~~N~l~~~~ 533 (558)
|+|++|.+++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55555555543 233332 25555555555555554 244444 34555555555555555444
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.2e-20 Score=176.12 Aligned_cols=197 Identities=16% Similarity=0.139 Sum_probs=168.0
Q ss_pred CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCC-CCCCccchhhcCCCCCCEEeCcC-CcCccCCChhccCCCCC
Q 048194 65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTS-FNGTQISSKLANISSLTYLNLSD-AGFAGQIPVQISRMARL 142 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L 142 (558)
..++.|+++++.+++..+. .+..+++|++|++++|. +... .+..|.++++|++|++++ |.+++..+..|.++++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCCcceEECHH--HccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 5799999999999877766 78999999999999997 7764 556899999999999999 99997667789999999
Q ss_pred cEEecccccccccccchhhcCCCCcc---EEEccCC-ccCccCCccccCCCCCC-EEeCccccCCCCCCccccccccchh
Q 048194 143 VALDFSFNQFSGSISSIRWEHLLNLV---CAVLSDN-SLDGSIPRSMFEFPMLQ-QLQLANNQFGGSIPRFSNASSSALD 217 (558)
Q Consensus 143 ~~L~L~~n~~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~l~ 217 (558)
++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++ .+|...
T Consensus 108 ~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~-------- 175 (239)
T 2xwt_C 108 KFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA-------- 175 (239)
T ss_dssp CEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT--------
T ss_pred CEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh--------
Confidence 999999999984 664 77888888 9999999 89876667789999999 9999999998 455432
Q ss_pred hhhchhhhcccCCCCCCCEEEccccc-CCcccChhhhcCC-CCCCEEEccCCcccccCCCcccCCCCCCCEEecCCC
Q 048194 218 TQIKRVYSCLGLRTQKLTPLLLSSNN-LNGTVQLDKILSL-GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 292 (558)
Q Consensus 218 ~li~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 292 (558)
...++|++|++++|+ ++ .++...+..+ ++|++|++++|+++...+. .+++|+.|++.++
T Consensus 176 -----------~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 176 -----------FNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp -----------TTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred -----------cCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence 333789999999995 87 7777788999 9999999999999854432 5788999999876
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.1e-22 Score=197.28 Aligned_cols=101 Identities=22% Similarity=0.142 Sum_probs=60.9
Q ss_pred CCCCEEEcccccCCcccChhhhcCC--CCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCC--CCC-CCCCCCC
Q 048194 232 QKLTPLLLSSNNLNGTVQLDKILSL--GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE--IPN-LKNQSQL 306 (558)
Q Consensus 232 ~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~-~~~~~~L 306 (558)
..++.++++++.+. ...+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.++. ++. +..+++|
T Consensus 47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 34777888777665 2344444 6777777777777655433 3356667777777666652 444 5666666
Q ss_pred CEEecCCCcccccCChhHHhhccccceEEEcCCc
Q 048194 307 QYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 340 (558)
Q Consensus 307 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n 340 (558)
++|++++|.+++..+..+..++. |++|++++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~--L~~L~L~~~ 152 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSN--LVRLNLSGC 152 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTT--CSEEECTTC
T ss_pred CEEeCcCcccCHHHHHHHhcCCC--CCEEECCCC
Confidence 77777666665555555544333 555555554
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=8.7e-22 Score=197.88 Aligned_cols=241 Identities=20% Similarity=0.251 Sum_probs=157.2
Q ss_pred cccCCCCCCEEECCCCCCCCCc---cchhhcCCCCCCEEeCcCC---cCccCCChhc-------cCCCCCcEEecccccc
Q 048194 86 ILFSLHYLRSLNLARTSFNGTQ---ISSKLANISSLTYLNLSDA---GFAGQIPVQI-------SRMARLVALDFSFNQF 152 (558)
Q Consensus 86 ~~~~l~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~~n~~ 152 (558)
.+..+++|++|+|++|.+.... ++..+..+++|++|+|++| .+++.+|..+ ..+++|++|+|++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 4567788888888888776541 2234667888888888875 3444555544 6778888888888888
Q ss_pred ccc----ccchhhcCCCCccEEEccCCccCccCCcccc----CC---------CCCCEEeCccccCCC-CCCcccccccc
Q 048194 153 SGS----ISSIRWEHLLNLVCAVLSDNSLDGSIPRSMF----EF---------PMLQQLQLANNQFGG-SIPRFSNASSS 214 (558)
Q Consensus 153 ~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~l---------~~L~~L~l~~n~~~~-~~~~~~~~~~~ 214 (558)
.+. ++. .+..+++|++|++++|.+++..+..+. .+ ++|++|++++|++++ .++..
T Consensus 107 ~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l------ 179 (386)
T 2ca6_A 107 GPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW------ 179 (386)
T ss_dssp CTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH------
T ss_pred CHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH------
Confidence 752 333 467788888888888887643333333 33 788888888888762 22211
Q ss_pred chhhhhchhhhcccCCCCCCCEEEcccccCCcc----cChhhhcCCCCCCEEEccCCccc----ccCCCcccCCCCCCCE
Q 048194 215 ALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT----VQLDKILSLGNLAKLDLSYNSLA----VDESSRNYSFSPMLEL 286 (558)
Q Consensus 215 ~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~~L~~ 286 (558)
...+ ..+++|++|++++|.++.. +....+..+++|++|++++|.++ ...+.. +..+++|+.
T Consensus 180 ------~~~l----~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~ 248 (386)
T 2ca6_A 180 ------AKTF----QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRE 248 (386)
T ss_dssp ------HHHH----HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCE
T ss_pred ------HHHH----HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCE
Confidence 0111 5667888888888877621 12125667788888888888875 223333 566777888
Q ss_pred EecCCCCCCCC-----CC-C--CCCCCCCEEecCCCcccc----cCChhH-HhhccccceEEEcCCccccccC
Q 048194 287 LNLASCKLREI-----PN-L--KNQSQLQYLYLSENQISR----EIPNWI-WRVSVVGLHCLNLSHNFLVGFQ 346 (558)
Q Consensus 287 L~l~~n~l~~l-----~~-~--~~~~~L~~L~l~~n~l~~----~~~~~~-~~~~~~~L~~L~ls~n~l~~~~ 346 (558)
|++++|.++.. +. + ..+++|++|++++|.+++ .+|..+ ..++. |++|++++|.+++..
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~--L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD--LLFLELNGNRFSEED 319 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT--CCEEECTTSBSCTTS
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC--ceEEEccCCcCCcch
Confidence 88888877732 33 3 447778888888887765 355555 22344 777777777776554
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=8.7e-20 Score=166.40 Aligned_cols=176 Identities=16% Similarity=0.108 Sum_probs=82.5
Q ss_pred eEEEcCCccccccCCCCCCCccCEEEcccccCcccCCC---CCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCC
Q 048194 333 HCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQ---LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ 409 (558)
Q Consensus 333 ~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~ 409 (558)
+.++.+++.++.++... .+++++|++++|.+.+..+. .+.+|++|++++|.++ +..+..+..+++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~ 79 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---------SLPNGVFNKLTSLT 79 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------CCCTTTTTTCTTCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---------ccChhhcCCCCCcC
Confidence 45555555555443221 34556666666655533322 1334555555555544 11122234445555
Q ss_pred EEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhh
Q 048194 410 TLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDV 489 (558)
Q Consensus 410 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 489 (558)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..+..+
T Consensus 80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---------------l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK---------------LTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSCCSCCCTTTT
T ss_pred EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhcc---------------CCcCCEEECCCCccceeCHHHh
Confidence 5555555555433344445555555555555554333322221 4455555555555554444344
Q ss_pred cccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCC
Q 048194 490 GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASL 540 (558)
Q Consensus 490 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 540 (558)
..+++|++|++++|.+.+ .+++|+.|+++.|++++.+|..++.+
T Consensus 145 ~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 455555555555554432 23344555555555555555544443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=2.1e-19 Score=186.85 Aligned_cols=189 Identities=26% Similarity=0.347 Sum_probs=146.3
Q ss_pred CCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCc
Q 048194 305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNN 384 (558)
Q Consensus 305 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~ 384 (558)
+++.|++++|.+++ +|..+. ++|++|++++|.++.++ ..+++|+.|++++|.+++ +|....+|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~l~~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPELPASLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSC
T ss_pred CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cchhhcCCCEEECCCCc
Confidence 78999999999875 666442 34999999999998665 347889999999998887 55555588999999998
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhh
Q 048194 385 FTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL 464 (558)
Q Consensus 385 ~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~ 464 (558)
++ .+|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +
T Consensus 132 l~----------~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l-------------- 178 (571)
T 3cvr_A 132 LT----------MLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L-------------- 178 (571)
T ss_dssp CS----------CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--------------
T ss_pred CC----------CCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--------------
Confidence 87 3555 56788999999998885 554 56789999999998876 554 3
Q ss_pred hhhhccceEEECCCCcccccCchhhcccCCC-------CeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhh
Q 048194 465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSL-------YGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQL 537 (558)
Q Consensus 465 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 537 (558)
.++|+.|+|++|.++. +|. +.. +| +.|++++|+|+ .+|..+..+++|+.|+|++|++++..|..+
T Consensus 179 ---~~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 179 ---PESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp ---CTTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred ---hCCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 2788899999998884 444 544 66 88999999888 688888888899999999999988888777
Q ss_pred cCCCC
Q 048194 538 ASLYF 542 (558)
Q Consensus 538 ~~l~~ 542 (558)
..++.
T Consensus 251 ~~l~~ 255 (571)
T 3cvr_A 251 SQQTA 255 (571)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 76543
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=4.2e-19 Score=163.04 Aligned_cols=133 Identities=25% Similarity=0.201 Sum_probs=82.2
Q ss_pred CCEEECcCCcCCccCC-cccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc
Q 048194 408 LQTLDLNGNRPQGTVP-KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL 486 (558)
Q Consensus 408 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 486 (558)
+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+.. +++|++|+|++|.+++..+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~---------------l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---------------ASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT---------------CTTCCEEECCSSCCCCCCG
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC---------------CCCCCEEECCCCccCccCH
Confidence 4566666666654433 33556666666666666665544444432 5666666666666666555
Q ss_pred hhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCee
Q 048194 487 EDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 487 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 555 (558)
..|..+++|++|++++|++++..|..|..+++|+.|+|++|++++..|..|..+++|++|++++|++++
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 556666666666666666665556666666666666666666666556666666666666666666654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.6e-19 Score=177.05 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=43.6
Q ss_pred CCccceEeCCC----------CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCE-Ee
Q 048194 54 CDWSGVDCDEA----------GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTY-LN 122 (558)
Q Consensus 54 c~~~~~~c~~~----------~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~-L~ 122 (558)
|.|..|.|... .++++|+|++|.++...+. .|..+++|++|+|++|.+.+...+..|.+++++++ +.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 55667777431 2344444444444432222 34444444455544444433201223444444433 23
Q ss_pred CcCCcCccCCChhccCCCCCcEEeccccccc
Q 048194 123 LSDAGFAGQIPVQISRMARLVALDFSFNQFS 153 (558)
Q Consensus 123 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~ 153 (558)
+.+|.++...|..|..+++|++|++++|.+.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred ccCCcccccCchhhhhccccccccccccccc
Confidence 3334444333444444444444444444444
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.9e-19 Score=176.68 Aligned_cols=237 Identities=20% Similarity=0.186 Sum_probs=137.9
Q ss_pred EEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE-EEcc
Q 048194 95 SLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC-AVLS 173 (558)
Q Consensus 95 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~-L~L~ 173 (558)
+++.+++.++. +|..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.++...|.+++++++ +.+.
T Consensus 13 ~v~C~~~~Lt~--iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCCS--CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCCc--cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34445555543 44433 2466777777777764333456777777777777777665555445666766654 4455
Q ss_pred CCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccc-cCCcccChhh
Q 048194 174 DNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSN-NLNGTVQLDK 252 (558)
Q Consensus 174 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~ 252 (558)
+|++....|..+..+++|++|++++|++....+..+ ....++..|++.++ .+. .++...
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-------------------~~~~~l~~l~l~~~~~i~-~l~~~~ 148 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK-------------------IHSLQKVLLDIQDNINIH-TIERNS 148 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT-------------------CCBSSCEEEEEESCTTCC-EECTTS
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhh-------------------cccchhhhhhhccccccc-cccccc
Confidence 566665556667777777777777777764443332 34445666666553 343 555555
Q ss_pred hcCCC-CCCEEEccCCcccccCCCcccCCCCCCCEEecCC-CCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhc
Q 048194 253 ILSLG-NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS-CKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVS 328 (558)
Q Consensus 253 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 328 (558)
+..+. .++.|++++|+++...+.. + ...+|+++++.+ |.++.+|. +..+++|++|++++|+++ .+|... ..
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~-f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~--~~ 223 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSA-F-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG--LE 223 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTS-S-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS--CT
T ss_pred hhhcchhhhhhccccccccCCChhh-c-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh--hc
Confidence 55543 4667777777776433322 2 345677777764 56777776 677777777777777775 333321 11
Q ss_pred cccceEEEcCCc-cccccCCCCCCCccCEEEcccc
Q 048194 329 VVGLHCLNLSHN-FLVGFQAPYSIPALRFIDLISN 362 (558)
Q Consensus 329 ~~~L~~L~ls~n-~l~~~~~~~~~~~L~~L~l~~n 362 (558)
+|+.|.+.++ .++..+....+++|+.+++.++
T Consensus 224 --~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 224 --NLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp --TCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred --cchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 2555554433 3344433334666666666543
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=5.8e-19 Score=162.10 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=71.5
Q ss_pred CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194 355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV 434 (558)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 434 (558)
+.++++++.++......+.+++.|++++|.+++ ..+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~---------i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV---------IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE---------ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC---------cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 455666665553333334455555555555541 12224444555555555555555444555555555555
Q ss_pred EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194 435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG 514 (558)
Q Consensus 435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 514 (558)
|++++|.+++..+..+. .+++|++|+|++|.+++..+..|..+++|+.|++++|++++..+..|.
T Consensus 85 L~Ls~N~l~~l~~~~f~---------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFE---------------GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp EECCSSCCCCCCTTTTT---------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred EECCCCcCCccCHhHcc---------------CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 55555555432222221 144455555555555444444444455555555555555443334444
Q ss_pred CCCCCCeecCCCCcC
Q 048194 515 NLKRLESLDLSMNNL 529 (558)
Q Consensus 515 ~l~~L~~L~L~~N~l 529 (558)
.+++|+.|++++|++
T Consensus 150 ~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCTTCCEEECCSSCE
T ss_pred CCCCCCEEEeCCCCc
Confidence 445555555555544
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.9e-19 Score=164.17 Aligned_cols=182 Identities=18% Similarity=0.162 Sum_probs=130.1
Q ss_pred CCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCC
Q 048194 54 CDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIP 133 (558)
Q Consensus 54 c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 133 (558)
|.|.++.|.. +.++. +|. ...++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+
T Consensus 7 C~~~~v~c~~-----------~~l~~-~p~----~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 7 CSGTTVECYS-----------QGRTS-VPT----GIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp EETTEEECCS-----------SCCSS-CCS----CCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred ECCCEEEecC-----------CCccC-CCC----CCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccCh
Confidence 6798888864 22221 222 2235788888888888765 55567788888888888888885555
Q ss_pred hhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccc
Q 048194 134 VQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASS 213 (558)
Q Consensus 134 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 213 (558)
..|..+++|++|++++|.++ .++...+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---- 144 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF---- 144 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT----
T ss_pred hhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh----
Confidence 56778888888888888887 4433256788888888888888886656667788888888888888876555444
Q ss_pred cchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCC
Q 048194 214 SALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS 281 (558)
Q Consensus 214 ~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 281 (558)
..+++|++|++++|.+.+ .+++|++|+++.|.+++..|.. ++.+
T Consensus 145 ---------------~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~-~~~l 188 (208)
T 2o6s_A 145 ---------------DRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNS-AGSV 188 (208)
T ss_dssp ---------------TTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCT-TSSB
T ss_pred ---------------ccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeecc-Cccc
Confidence 677888888888886653 3457788888888888777765 4443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=5.1e-19 Score=184.01 Aligned_cols=195 Identities=23% Similarity=0.321 Sum_probs=157.5
Q ss_pred CCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEccc
Q 048194 283 MLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS 361 (558)
Q Consensus 283 ~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~ 361 (558)
+++.|++++|.++.+|. + .++|++|++++|.++ .+| ..+ ++|++|++++|.+++++. -..+|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l--~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELP--ASLEYLDACDNRLSTLPE--LPASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCC--TTCCEEECCSSCCSCCCC--CCTTCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---ccc--CCCCEEEccCCCCCCcch--hhcCCCEEECCC
Confidence 89999999999999998 5 378999999999997 677 223 359999999999998665 233999999999
Q ss_pred ccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCc
Q 048194 362 NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQ 441 (558)
Q Consensus 362 n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 441 (558)
|.+++ +|..+.+|+.|++++|.++ .+|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.
T Consensus 130 N~l~~-lp~~l~~L~~L~Ls~N~l~----------~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 130 NQLTM-LPELPALLEYINADNNQLT----------MLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp SCCSC-CCCCCTTCCEEECCSSCCS----------CCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred CcCCC-CCCcCccccEEeCCCCccC----------cCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence 99998 5557889999999999998 3555 46789999999999996 666 55 899999999999
Q ss_pred CcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCC
Q 048194 442 FSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKR 518 (558)
Q Consensus 442 i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 518 (558)
++ .+|. +.. ......+.|+.|+|++|.++. +|..+..+++|+.|++++|++++.+|..+..++.
T Consensus 192 L~-~lp~-~~~----------~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 192 LE-SLPA-VPV----------RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CS-SCCC-CC------------------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CC-chhh-HHH----------hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 98 5665 321 001123445999999999995 7788888999999999999999999988876543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.8e-18 Score=159.95 Aligned_cols=153 Identities=21% Similarity=0.186 Sum_probs=83.6
Q ss_pred cCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCC
Q 048194 354 LRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLE 433 (558)
Q Consensus 354 L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 433 (558)
-+.++++++.+.......+.++++|++++|.++ +..|..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQIT---------KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccC---------ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 455666666665443344556666666666655 23344555556666666666666544444455566666
Q ss_pred EEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccc
Q 048194 434 VLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF 513 (558)
Q Consensus 434 ~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 513 (558)
+|++++|.+++..+..+.. +++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~---------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDR---------------LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp EEECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred EEECCCCcCCccChhHhCc---------------chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 6666666655433332222 555555555555555 344555555555555555555554444445
Q ss_pred cCCCCCCeecCCCCcCcc
Q 048194 514 GNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 514 ~~l~~L~~L~L~~N~l~~ 531 (558)
..+++|+.|++++|.+..
T Consensus 156 ~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCTTCCEEECTTSCBCT
T ss_pred hCCCCCCEEEeeCCCccC
Confidence 555555555555555543
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.3e-18 Score=172.78 Aligned_cols=176 Identities=23% Similarity=0.209 Sum_probs=135.6
Q ss_pred CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCC-CCCCCCEEECcCCcCCccCCcccccCCCCC
Q 048194 355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFP-RNCLLQTLDLNGNRPQGTVPKSIAKCKMLE 433 (558)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 433 (558)
+.++++++.+.......+..++.|++++|.+++ ..+..+. .+++|++|++++|.+++..+..+..+++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~---------l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR---------LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE---------ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCc---------cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 456666666654333455567777777777762 3344555 788899999999999877778889999999
Q ss_pred EEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccc
Q 048194 434 VLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF 513 (558)
Q Consensus 434 ~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 513 (558)
+|++++|.+++..+..+.. +++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..|
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~---------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSD---------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp EEECCSSCCCEECTTTTTT---------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred EEECCCCcCCcCCHHHhCC---------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 9999999988665555533 8889999999999998888889999999999999999985433444
Q ss_pred ---cCCCCCCeecCCCCcCcccchhhhcCCCC--CCEEeCcCCcCe
Q 048194 514 ---GNLKRLESLDLSMNNLSRAIPSQLASLYF--LSYLNLSYNQLE 554 (558)
Q Consensus 514 ---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~n~l~ 554 (558)
..+++|+.|+|++|+++...+..+..++. ++.|++++|+++
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 57899999999999998766677888776 488999999876
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.2e-18 Score=158.25 Aligned_cols=168 Identities=19% Similarity=0.206 Sum_probs=134.1
Q ss_pred ccCCCCCCCCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEe
Q 048194 43 KLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLN 122 (558)
Q Consensus 43 ~~~~w~~~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 122 (558)
....|..+...|.|.++.|.. +.+. .+|. .+ .++|++|++++|.+.+. .+..|.++++|++|+
T Consensus 8 ~~~~~~~~~~~Cs~~~v~c~~-----------~~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ 70 (229)
T 3e6j_A 8 HHSAACPSQCSCSGTTVDCRS-----------KRHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELY 70 (229)
T ss_dssp ---CCCCTTCEEETTEEECTT-----------SCCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred hhhccCCCCCEEeCCEeEccC-----------CCcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEE
Confidence 344566688999999999964 2232 2333 22 27899999999999887 788899999999999
Q ss_pred CcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCC
Q 048194 123 LSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFG 202 (558)
Q Consensus 123 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 202 (558)
|++|.+....+..|..+++|++|+|++|.++ .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 9999998555566789999999999999998 454335788999999999999998 78888899999999999999998
Q ss_pred CCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCccc
Q 048194 203 GSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV 248 (558)
Q Consensus 203 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 248 (558)
+..+..+ ..+++|+.|++++|.+.+..
T Consensus 149 ~~~~~~~-------------------~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 149 SIPHGAF-------------------DRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCTTTT-------------------TTCTTCCEEECTTSCBCTTB
T ss_pred ccCHHHH-------------------hCCCCCCEEEeeCCCccCCc
Confidence 6655544 77889999999999887543
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.9e-18 Score=163.74 Aligned_cols=107 Identities=23% Similarity=0.310 Sum_probs=67.0
Q ss_pred CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194 402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF 481 (558)
Q Consensus 402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 481 (558)
+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++. .. +..+++|++|++++|.+
T Consensus 108 l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~---------------l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV---------------LSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG---------------GGGCTTCSEEECCSSCC
T ss_pred hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh---------------hccCCCCCEEEccCCcc
Confidence 55666677777777776642 3566667777777777766542 11 22366677777777766
Q ss_pred cccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194 482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
++..+ +..+++|+.|++++|++++ ++ .+..+++|+.|++++|+++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 65433 6666777777777776663 33 36666777777777776654
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.9e-18 Score=164.65 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=87.2
Q ss_pred CCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCE
Q 048194 114 NISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQ 193 (558)
Q Consensus 114 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 193 (558)
.+++|++|++++|.+. .++ .+..+++|++|++++|.++ .++. +.++++|++|++++|.+++ ++ .+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3444444555444444 222 2444444555555554444 2221 4444445555555544442 22 2445555555
Q ss_pred EeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccC
Q 048194 194 LQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDE 273 (558)
Q Consensus 194 L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 273 (558)
|++++|++++. +. + ..+++|++|++++|.+++ + ..+..+++|++|++++|++.+..
T Consensus 117 L~L~~n~i~~~-~~-l-------------------~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 117 LSLEHNGISDI-NG-L-------------------VHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp EECTTSCCCCC-GG-G-------------------GGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred EECCCCcCCCC-hh-h-------------------cCCCCCCEEEccCCcCCc-c--hhhccCCCCCEEEccCCccccch
Confidence 55555555432 11 1 444555555555555542 2 24555566666666666655433
Q ss_pred CCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCccc
Q 048194 274 SSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 317 (558)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~ 317 (558)
+ +..+++|+.|++++|.++.++.+..+++|+.|++++|++.
T Consensus 173 ~---l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 173 P---LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp G---GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred h---hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 3 4556666666666666666655666667777777777664
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=155.80 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=119.0
Q ss_pred CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194 355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV 434 (558)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 434 (558)
+.+++++|.++......+..+++|++++|.+++.. .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~--------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLE--------ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC--------CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccC--------chhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 35666666655433334556677777777776221 1234677888999999999988777778888899999
Q ss_pred EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194 435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG 514 (558)
Q Consensus 435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 514 (558)
|++++|.+++..+..+.. +++|++|+|++|.+++..+..|..+++|++|++++|++++..|..|.
T Consensus 86 L~Ls~N~l~~~~~~~~~~---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKG---------------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp EECCSSCCCCCCGGGGTT---------------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred EECCCCccCccCHhHhcC---------------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 999999887665554433 78899999999999888888888899999999999999877788888
Q ss_pred CCCCCCeecCCCCcCcccc
Q 048194 515 NLKRLESLDLSMNNLSRAI 533 (558)
Q Consensus 515 ~l~~L~~L~L~~N~l~~~~ 533 (558)
.+++|+.|++++|++....
T Consensus 151 ~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 151 TLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TCTTCCEEECCSCCEECSG
T ss_pred CCCCCCEEEecCcCCcCCC
Confidence 8999999999999887543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.4e-17 Score=152.75 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=119.6
Q ss_pred cEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCcee
Q 048194 376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPI 455 (558)
Q Consensus 376 ~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~ 455 (558)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..
T Consensus 14 ~~v~c~~~~l~----------~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~--- 78 (220)
T 2v9t_B 14 NIVDCRGKGLT----------EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--- 78 (220)
T ss_dssp TEEECTTSCCS----------SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT---
T ss_pred CEEEcCCCCcC----------cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC---
Confidence 56777777776 5565443 56888888888888766667888888888888888888776766644
Q ss_pred eccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchh
Q 048194 456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS 535 (558)
Q Consensus 456 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 535 (558)
+++|++|+|++|.++...+..|..+++|++|++++|++++..|..|..+++|+.|+|++|++++..+.
T Consensus 79 ------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 79 ------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp ------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 78888888888888866666678888888888888888877777888888888888888888877777
Q ss_pred hhcCCCCCCEEeCcCCcCee
Q 048194 536 QLASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 536 ~~~~l~~L~~L~l~~n~l~~ 555 (558)
.+..+++|++|++++|++..
T Consensus 147 ~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTCTTCCEEECCSSCEEC
T ss_pred HHhCCCCCCEEEeCCCCcCC
Confidence 78888888888888887753
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=7.5e-18 Score=151.99 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=113.3
Q ss_pred CCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194 397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF 476 (558)
Q Consensus 397 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 476 (558)
.+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..|..+.. +++|++|++
T Consensus 58 ~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---------------l~~L~~L~L 119 (197)
T 4ezg_A 58 DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG---------------LTSLTLLDI 119 (197)
T ss_dssp CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT---------------CTTCCEEEC
T ss_pred ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC---------------CCCCCEEEe
Confidence 455 5777888999999999665 3347888999999999999998777766644 889999999
Q ss_pred CCCcccccCchhhcccCCCCeeeCcCCc-CcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCee
Q 048194 477 STNNFKGPILEDVGLLKSLYGLNLSHNA-LTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 477 s~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 555 (558)
++|.+++..+..++.+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9999998788899999999999999998 66 555 68999999999999999985 44 68889999999999999876
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=9.9e-18 Score=176.33 Aligned_cols=169 Identities=19% Similarity=0.261 Sum_probs=79.4
Q ss_pred CCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcc
Q 048194 281 SPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLI 360 (558)
Q Consensus 281 ~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~ 360 (558)
++.|+.|++++|.++.++.+..+++|+.|++++|.+.+..+ +..+.. |+.|+|++|.+.+......+++|+.|+++
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~--L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKN--LGWLFLDENKIKDLSSLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTT--CCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCC--CCEEECcCCCCCCChhhccCCCCCEEEec
Confidence 34445555555555555445555555555555555543322 333333 55555555555443332335555555555
Q ss_pred cccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCC
Q 048194 361 SNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNN 440 (558)
Q Consensus 361 ~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 440 (558)
+|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|
T Consensus 118 ~N~l~~-------------------------------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 118 HNGISD-------------------------------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp TSCCCC-------------------------------C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred CCCCCC-------------------------------C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 554431 1 1133344455555555555432 34445555555555555
Q ss_pred cCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCc
Q 048194 441 QFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT 506 (558)
Q Consensus 441 ~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 506 (558)
.+.+..| +. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.
T Consensus 164 ~l~~~~~--l~---------------~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 164 QISDIVP--LA---------------GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCCCGG--GT---------------TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred cCCCchh--hc---------------cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 5443322 11 244555555555555432 23455555555555555554
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=7.8e-18 Score=177.13 Aligned_cols=190 Identities=19% Similarity=0.239 Sum_probs=139.7
Q ss_pred CCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEccccc
Q 048194 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQ 363 (558)
Q Consensus 284 L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~ 363 (558)
+..+.+..+.+..+..+..+++|+.|++++|.+.. ++ .+..++. |+.|+|++|.+.+..+...+++|+.|++++|.
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~--L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQ-GIQYLPN--VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTT--CCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCC-Ch-HHccCCC--CCEEEeeCCCCCCChhhccCCCCCEEECcCCC
Confidence 33444555555555555566777777787777753 33 3444444 77777777777665553446666666666555
Q ss_pred CcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCc
Q 048194 364 LRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS 443 (558)
Q Consensus 364 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 443 (558)
+. .+| .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.++
T Consensus 99 l~-------------------------------~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 99 IK-------------------------------DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CC-------------------------------CCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CC-------------------------------CCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 43 233 578889999999999999853 46889999999999999988
Q ss_pred ccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeec
Q 048194 444 DKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLD 523 (558)
Q Consensus 444 ~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 523 (558)
+. .. +..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|++++ +| .+..+++|+.|+
T Consensus 145 ~l--~~---------------l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~ 203 (605)
T 1m9s_A 145 DI--TV---------------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE 203 (605)
T ss_dssp CC--GG---------------GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred Cc--hh---------------hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEE
Confidence 53 22 2348999999999999997655 8899999999999999985 44 589999999999
Q ss_pred CCCCcCccc
Q 048194 524 LSMNNLSRA 532 (558)
Q Consensus 524 L~~N~l~~~ 532 (558)
|++|++++.
T Consensus 204 L~~N~l~~~ 212 (605)
T 1m9s_A 204 LFSQECLNK 212 (605)
T ss_dssp CCSEEEECC
T ss_pred ccCCcCcCC
Confidence 999998764
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=7.5e-19 Score=189.60 Aligned_cols=259 Identities=15% Similarity=0.095 Sum_probs=128.3
Q ss_pred CcHHHHHHHHHHHhhcCCCCCCCcccCCCCC-CCCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEE
Q 048194 19 CQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQ-STDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLN 97 (558)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~-~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 97 (558)
....++++++++..+.....+. .-..|.. ....+.|.+..+.. ++++.++|.++.+...... +.....|+.+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~~ 202 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTA--KKQQPTGDSTPSGTATNSAVST-PLTPKIELFANGKDEANQA---LLQHKKLSQYS 202 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTT--C-------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCc--ccCCCcCCCCccccCCCceecC-CccceEEeeCCCCCcchhh---HhhcCccCccc
Confidence 4556888999999887544332 3445643 44556788877765 7899999998887653222 22222233322
Q ss_pred -----CCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEc
Q 048194 98 -----LARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVL 172 (558)
Q Consensus 98 -----L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 172 (558)
+..|.+. . .+..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|. .++++++|++|+|
T Consensus 203 i~~~~~~~n~~~-~-~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L 277 (727)
T 4b8c_D 203 IDEDDDIENRMV-M-PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDL 277 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEEC
T ss_pred ccCcccccccee-c-ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeC
Confidence 2223332 2 4677889999999999999998 78888889999999999999998 7765 5899999999999
Q ss_pred cCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhh
Q 048194 173 SDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDK 252 (558)
Q Consensus 173 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 252 (558)
++|.++ .+|..++.+++|++|+|++|.++ .+|..+ ..+++|++|+|++|.+++.++ ..
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~-------------------~~l~~L~~L~L~~N~l~~~~p-~~ 335 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF-------------------GNLCNLQFLGVEGNPLEKQFL-KI 335 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST-------------------TSCTTCCCEECTTSCCCSHHH-HH
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh-------------------hcCCCccEEeCCCCccCCCCh-HH
Confidence 999999 78999999999999999999987 667655 888999999999999986665 33
Q ss_pred hcCCC-CCCEEEccCCcccccCCCcccCCCCCCCEEecCCCC-----CCCCCC-----CCCCCCCCEEecCCCccc
Q 048194 253 ILSLG-NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK-----LREIPN-----LKNQSQLQYLYLSENQIS 317 (558)
Q Consensus 253 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-----l~~l~~-----~~~~~~L~~L~l~~n~l~ 317 (558)
+..+. .+..+++++|.+.+..|. .|+.|+++.|. +..++. +..+..+....++.|.+.
T Consensus 336 ~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 336 LTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCCC-------C-----------------------------------------CCC
T ss_pred HhhcchhhhHHhhccCcccCcCcc-------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 33221 222467888888765543 45566666651 112222 344555566666676654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2e-17 Score=149.19 Aligned_cols=153 Identities=15% Similarity=0.158 Sum_probs=75.8
Q ss_pred cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194 88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL 167 (558)
Q Consensus 88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 167 (558)
..+++|++|++++|.+.. +| .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+. .++.+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTC
T ss_pred hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccCh-hhcCCCCC
Confidence 344555555555555553 33 3555555556655555443 1 22455555555555555555533322 34555555
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcc
Q 048194 168 VCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT 247 (558)
Q Consensus 168 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~ 247 (558)
++|++++|.+++..|..+..+++|++|++++|...+.++. + ..+++|++|++++|.+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l-------------------~~l~~L~~L~l~~n~i~~- 173 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-L-------------------KTLPELKSLNIQFDGVHD- 173 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-G-------------------GGCSSCCEEECTTBCCCC-
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh-h-------------------cCCCCCCEEECCCCCCcC-
Confidence 5555555555544455555555555555555542222221 1 444555555555555542
Q ss_pred cChhhhcCCCCCCEEEccCCcc
Q 048194 248 VQLDKILSLGNLAKLDLSYNSL 269 (558)
Q Consensus 248 ~~~~~~~~l~~L~~L~l~~n~l 269 (558)
++ .+..+++|++|++++|++
T Consensus 174 ~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 174 YR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CT--TGGGCSSCCEEEECBC--
T ss_pred hH--HhccCCCCCEEEeeCccc
Confidence 22 344445555555555544
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=8.7e-18 Score=158.73 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=59.3
Q ss_pred CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194 402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF 481 (558)
Q Consensus 402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 481 (558)
+..+++|++|++++|++++ ++. +.. ++|+.|++++|.+++. + . +..+++|+.|++++|.+
T Consensus 81 l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~---------------l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-S---------------LIHLKNLEILSIRNNKL 140 (263)
T ss_dssp GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-G---------------GTTCTTCCEEECTTSCC
T ss_pred hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-h-h---------------hcCcccccEEECCCCcC
Confidence 5556666666666666653 222 122 5666666666666532 1 1 12356666666666666
Q ss_pred cccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194 482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
++. ..++.+++|++|++++|++++. ..+..+++|+.|++++|+++.
T Consensus 141 ~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 141 KSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 543 2455666666666666666543 445566666666666666654
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=1e-16 Score=158.99 Aligned_cols=154 Identities=22% Similarity=0.213 Sum_probs=133.7
Q ss_pred CcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccc-cCCCCCEEECCCCcCcccCCccccCc
Q 048194 375 PIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIA-KCKMLEVLNLGNNQFSDKFPCSLYDA 453 (558)
Q Consensus 375 l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~p~~~~~~ 453 (558)
-+.++++++.++ .+|..+. ..++.|++++|.+++..+..+. .+++|+.|++++|.+++..+..+..
T Consensus 20 ~~~l~c~~~~l~----------~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~- 86 (361)
T 2xot_A 20 SNILSCSKQQLP----------NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP- 86 (361)
T ss_dssp TTEEECCSSCCS----------SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-
T ss_pred CCEEEeCCCCcC----------ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-
Confidence 468999999988 5676543 3589999999999987777787 9999999999999999777666644
Q ss_pred eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194 454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI 533 (558)
Q Consensus 454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 533 (558)
+++|++|+|++|.++...+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+++...
T Consensus 87 --------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 87 --------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp --------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred --------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 899999999999999888888999999999999999999888899999999999999999999655
Q ss_pred hhhh---cCCCCCCEEeCcCCcCee
Q 048194 534 PSQL---ASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 534 ~~~~---~~l~~L~~L~l~~n~l~~ 555 (558)
+..+ ..+++|+.|+|++|+|++
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCC
T ss_pred HHHhcCcccCCcCCEEECCCCCCCc
Confidence 5555 578999999999999986
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.3e-19 Score=189.41 Aligned_cols=121 Identities=21% Similarity=0.206 Sum_probs=94.8
Q ss_pred CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE 487 (558)
Q Consensus 408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 487 (558)
|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+.. +++|+.|+|++|.+++ +|
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------l~~L~~L~Ls~N~l~~-lp- 502 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA---------------LRCLEVLQASDNALEN-VD- 502 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG---------------CTTCCEEECCSSCCCC-CG-
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc---------------CCCCCEEECCCCCCCC-Cc-
Confidence 7778888888874 555 778888888888888877 56665543 7788888888888886 45
Q ss_pred hhcccCCCCeeeCcCCcCcccc-cccccCCCCCCeecCCCCcCcccchh---hhcCCCCCCEEeC
Q 048194 488 DVGLLKSLYGLNLSHNALTGSI-PSSFGNLKRLESLDLSMNNLSRAIPS---QLASLYFLSYLNL 548 (558)
Q Consensus 488 ~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l 548 (558)
.++.+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++..|. .+..+++|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7888999999999999998766 88899999999999999999865442 2344788888875
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1e-16 Score=143.70 Aligned_cols=133 Identities=23% Similarity=0.259 Sum_probs=95.6
Q ss_pred CcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCc-ccccCCCCCEEECCCCcCcccCCccccCc
Q 048194 375 PIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPK-SIAKCKMLEVLNLGNNQFSDKFPCSLYDA 453 (558)
Q Consensus 375 l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~~p~~~~~~ 453 (558)
.+.++++++.++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..
T Consensus 10 ~~~l~~s~~~l~----------~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~- 76 (192)
T 1w8a_A 10 GTTVDCTGRGLK----------EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG- 76 (192)
T ss_dssp TTEEECTTSCCS----------SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-
T ss_pred CCEEEcCCCCcC----------cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-
Confidence 367788888776 55554433 678888888888755553 4777888888888888877766665543
Q ss_pred eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194 454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI 533 (558)
Q Consensus 454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 533 (558)
+++|++|+|++|.+++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++++..
T Consensus 77 --------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 77 --------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp --------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred --------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 677777777777777766666777777777777777777777777777777777777777776544
Q ss_pred h
Q 048194 534 P 534 (558)
Q Consensus 534 ~ 534 (558)
+
T Consensus 143 ~ 143 (192)
T 1w8a_A 143 H 143 (192)
T ss_dssp G
T ss_pred c
Confidence 3
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=8.4e-17 Score=151.95 Aligned_cols=102 Identities=22% Similarity=0.273 Sum_probs=49.2
Q ss_pred CCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194 90 LHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC 169 (558)
Q Consensus 90 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 169 (558)
+.+++.++++.+.+.+. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|+++ .++. +.++++|++
T Consensus 18 l~~l~~l~l~~~~i~~~--~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL--V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTSE--E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCE
T ss_pred HHHHHHHHhcCCCcccc--c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCE
Confidence 34444555555555442 2 3455556666666666555 333 4555555555555555555 2221 444555555
Q ss_pred EEccCCccCccCCccccCCCCCCEEeCccccCC
Q 048194 170 AVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFG 202 (558)
Q Consensus 170 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 202 (558)
|++++|.+++ +|. +.. ++|++|++++|.++
T Consensus 90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELR 119 (263)
T ss_dssp EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCS
T ss_pred EECCCCccCC-cCc-ccc-CcccEEEccCCccC
Confidence 5555554442 222 111 44444444444443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.8e-16 Score=137.80 Aligned_cols=133 Identities=25% Similarity=0.210 Sum_probs=99.1
Q ss_pred CCCCEEECcCCcCC-ccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc
Q 048194 406 CLLQTLDLNGNRPQ-GTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP 484 (558)
Q Consensus 406 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 484 (558)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+. .+++|++|++++|.+++.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~---------------~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP---------------KLPKLKKLELSENRIFGG 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC---------------CCSSCCEEEEESCCCCSC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc---------------cCCCCCEEECcCCcCchH
Confidence 45777777777776 56676677777788888888777654 3332 267788888888888776
Q ss_pred CchhhcccCCCCeeeCcCCcCcccc-cccccCCCCCCeecCCCCcCcccch---hhhcCCCCCCEEeCcCCcCee
Q 048194 485 ILEDVGLLKSLYGLNLSHNALTGSI-PSSFGNLKRLESLDLSMNNLSRAIP---SQLASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 485 ~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~n~l~~ 555 (558)
+|..+..+++|++|++++|++++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.++.
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 6777777888888888888887532 2677888888888888888876544 477888888888888887765
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=6.1e-16 Score=138.68 Aligned_cols=158 Identities=19% Similarity=0.274 Sum_probs=120.2
Q ss_pred CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCC--CCCCCCCCCEEECcCCcCCccCCcccccCCCC
Q 048194 355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPD--TFPRNCLLQTLDLNGNRPQGTVPKSIAKCKML 432 (558)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 432 (558)
+.+++++|.++......+.++++|++++|.+. .++. .+..+++|++|++++|.+++..|..+..+++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELG----------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCC----------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCC----------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 68899999886544445678999999999987 3333 37888899999999999998888889999999
Q ss_pred CEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccc
Q 048194 433 EVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS 512 (558)
Q Consensus 433 ~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 512 (558)
++|++++|.+++..|..+.. +++|++|+|++|.+++..|..|..+++|++|++++|++++..+..
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLG---------------LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CEEECCSCCCCEECSSSSTT---------------CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CEEECCCCcCCccCHHHhcC---------------CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 99999999998877766544 788999999999999888888999999999999999988655421
Q ss_pred -ccCCCCCCeecCCCCcCcccchhhhcC
Q 048194 513 -FGNLKRLESLDLSMNNLSRAIPSQLAS 539 (558)
Q Consensus 513 -l~~l~~L~~L~L~~N~l~~~~~~~~~~ 539 (558)
+. ..++...+..+......|..+.+
T Consensus 146 ~~~--~~l~~~~~~~~~~~C~~P~~l~~ 171 (192)
T 1w8a_A 146 WFA--EWLRKKSLNGGAARCGAPSKVRD 171 (192)
T ss_dssp HHH--HHHHHHCCSGGGCBBCSSTTTTT
T ss_pred HHH--HHHHHcCCCCCCCCCCCChHHcC
Confidence 11 11233344455555455555544
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=3.7e-16 Score=134.01 Aligned_cols=128 Identities=23% Similarity=0.227 Sum_probs=101.9
Q ss_pred CCCCEEECcCCcCC-ccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc
Q 048194 406 CLLQTLDLNGNRPQ-GTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP 484 (558)
Q Consensus 406 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 484 (558)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+. .+++|++|++++|.+++.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~---------------~l~~L~~L~Ls~n~i~~~ 79 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP---------------KLNKLKKLELSDNRVSGG 79 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC---------------CCTTCCEEECCSSCCCSC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh---------------cCCCCCEEECCCCcccch
Confidence 56888888888887 66777778888888888888887754 2222 377888888888888877
Q ss_pred CchhhcccCCCCeeeCcCCcCccc-ccccccCCCCCCeecCCCCcCcccch---hhhcCCCCCCEEeCcC
Q 048194 485 ILEDVGLLKSLYGLNLSHNALTGS-IPSSFGNLKRLESLDLSMNNLSRAIP---SQLASLYFLSYLNLSY 550 (558)
Q Consensus 485 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~ 550 (558)
+|..++.+++|++|++++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|++|++++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 778788899999999999999853 34778899999999999999987655 5788899999998874
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=5.7e-17 Score=174.93 Aligned_cols=143 Identities=23% Similarity=0.281 Sum_probs=106.6
Q ss_pred CCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194 397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF 476 (558)
Q Consensus 397 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 476 (558)
..+..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.. +++|++|+|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------l~~L~~L~L 277 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN---------------LSNLRVLDL 277 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG---------------GTTCCEEEC
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC---------------CCCCCEEeC
Confidence 45666777888888888888887 67777778888888888888887 67766543 888888888
Q ss_pred CCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCC-CCEEeCcCCcCee
Q 048194 477 STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYF-LSYLNLSYNQLEG 555 (558)
Q Consensus 477 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~n~l~~ 555 (558)
++|.++ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|++++.+|..+..+.. +..+++++|.++|
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 888888 56888888888888888888887 77888888888888888888888877776654321 2235677777776
Q ss_pred ecC
Q 048194 556 RFQ 558 (558)
Q Consensus 556 ~~~ 558 (558)
.+|
T Consensus 356 ~~p 358 (727)
T 4b8c_D 356 PLP 358 (727)
T ss_dssp CCC
T ss_pred cCc
Confidence 665
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2.7e-18 Score=179.53 Aligned_cols=202 Identities=19% Similarity=0.116 Sum_probs=114.5
Q ss_pred cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCc-------------CccCCChhccCCCCCcEEe-ccccccc
Q 048194 88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAG-------------FAGQIPVQISRMARLVALD-FSFNQFS 153 (558)
Q Consensus 88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~~~ 153 (558)
...++|+.|+|++|.+.. +|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~--Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV--LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHHh--hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 345556666666665542 55566666666666654443 2333444444455555554 3333322
Q ss_pred ccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCC
Q 048194 154 GSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQK 233 (558)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~ 233 (558)
.+ +.+.+++|.+.. ++. ..|++|++++|.+++ +|. + ..+++
T Consensus 424 -~L-----------~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~-------------------~~l~~ 464 (567)
T 1dce_A 424 -DL-----------RSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-L-------------------EQLLL 464 (567)
T ss_dssp -HH-----------HHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-G-------------------GGGTT
T ss_pred -hh-----------hhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-c-------------------ccccc
Confidence 11 111122222221 111 236677777777664 443 3 56667
Q ss_pred CCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCC--CC-CCCCCCCCEEe
Q 048194 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI--PN-LKNQSQLQYLY 310 (558)
Q Consensus 234 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l--~~-~~~~~~L~~L~ 310 (558)
|+.|++++|.++ .+| ..+..+++|++|++++|.+++. | . +..+++|+.|++++|+++.+ |. +..+++|+.|+
T Consensus 465 L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l~~l-p-~-l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALENV-D-G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp CCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSSCCCCC-G-G-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred CcEeecCccccc-ccc-hhhhcCCCCCEEECCCCCCCCC-c-c-cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 777777777776 555 3566777777777777777652 3 3 66777777777777777766 55 77778888888
Q ss_pred cCCCcccccCChh---HHhhccccceEEEc
Q 048194 311 LSENQISREIPNW---IWRVSVVGLHCLNL 337 (558)
Q Consensus 311 l~~n~l~~~~~~~---~~~~~~~~L~~L~l 337 (558)
+++|++++..|.. +..++ +|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp--~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLP--SVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCT--TCSEEEC
T ss_pred ecCCcCCCCccHHHHHHHHCc--ccCccCC
Confidence 8888876554422 22233 3777753
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.7e-15 Score=132.63 Aligned_cols=134 Identities=21% Similarity=0.204 Sum_probs=97.8
Q ss_pred CCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCc
Q 048194 374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA 453 (558)
Q Consensus 374 ~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~ 453 (558)
+.+.++++++.++ .+|..+ .++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 8 ~~~~l~~~~~~l~----------~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~- 74 (177)
T 2o6r_A 8 SGTEIRCNSKGLT----------SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK- 74 (177)
T ss_dssp ETTEEECCSSCCS----------SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-
T ss_pred CCCEEEecCCCCc----------cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-
Confidence 3567888888776 455433 257888888888888666666788888888888888887554443332
Q ss_pred eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194 454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI 533 (558)
Q Consensus 454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 533 (558)
+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 75 --------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 75 --------------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred --------------CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 777888888888888766666777888888888888887555555677888888888888877654
Q ss_pred h
Q 048194 534 P 534 (558)
Q Consensus 534 ~ 534 (558)
|
T Consensus 141 ~ 141 (177)
T 2o6r_A 141 P 141 (177)
T ss_dssp H
T ss_pred c
Confidence 4
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=3.1e-15 Score=133.97 Aligned_cols=129 Identities=26% Similarity=0.325 Sum_probs=97.7
Q ss_pred CcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCce
Q 048194 375 PIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAP 454 (558)
Q Consensus 375 l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~ 454 (558)
-+.++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..
T Consensus 12 ~~~l~~~~~~l~----------~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~-- 76 (193)
T 2wfh_A 12 DTVVRCSNKGLK----------VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN-- 76 (193)
T ss_dssp TTEEECTTSCCS----------SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT--
T ss_pred CCEEEcCCCCCC----------cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC--
Confidence 467888888877 5565443 47888888888887 66778888888888888888887665555543
Q ss_pred eeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194 455 ITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 455 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
+++|++|+|++|.+++..+..|..+++|+.|+|++|+++...+..|..+++|+.|++++|++..
T Consensus 77 -------------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 77 -------------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp -------------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred -------------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7788888888888887777778888888888888888875555567778888888888887753
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=7.4e-16 Score=150.86 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=67.3
Q ss_pred CCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCC-eeeCcCCcCcc
Q 048194 429 CKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLY-GLNLSHNALTG 507 (558)
Q Consensus 429 l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~ 507 (558)
+++|+.+++.+|.++...+..+.. +++|+++++.+| ++......|.++++|+ .+++.+ .++.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~---------------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~ 287 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQ---------------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA 287 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTT---------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred cCCCeEEECCCCCcceecHhhhhC---------------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE
Confidence 555566666555554333333322 555666666555 5545566777777787 777776 6665
Q ss_pred cccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeC
Q 048194 508 SIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNL 548 (558)
Q Consensus 508 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 548 (558)
..+.+|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus 288 I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 55677778888888888788777666677778878877753
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.6e-15 Score=132.92 Aligned_cols=138 Identities=22% Similarity=0.183 Sum_probs=105.7
Q ss_pred CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCcccc
Q 048194 372 PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLY 451 (558)
Q Consensus 372 ~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~ 451 (558)
+.+++.|++++|.++. +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+
T Consensus 23 ~~~L~~L~l~~n~l~~--------~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~- 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSND--------GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA- 91 (168)
T ss_dssp TTSCSEEECCSCBCBT--------TBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH-
T ss_pred cccCCEEECCCCCCCh--------hhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH-
Confidence 3456666666666541 24666677788899999999988855 678888899999999998887655443
Q ss_pred CceeeccccchhhhhhhccceEEECCCCcccccC-chhhcccCCCCeeeCcCCcCccccc---ccccCCCCCCeecCCCC
Q 048194 452 DAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI-LEDVGLLKSLYGLNLSHNALTGSIP---SSFGNLKRLESLDLSMN 527 (558)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~N 527 (558)
..+++|++|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|
T Consensus 92 --------------~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 92 --------------EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp --------------HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred --------------hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 23788999999999988643 3778899999999999999985544 47889999999999999
Q ss_pred cCcccchh
Q 048194 528 NLSRAIPS 535 (558)
Q Consensus 528 ~l~~~~~~ 535 (558)
.+. ..|+
T Consensus 158 ~~~-~~~~ 164 (168)
T 2ell_A 158 EDQ-EAPD 164 (168)
T ss_dssp TSC-BCCS
T ss_pred Chh-hccc
Confidence 886 3443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=9.6e-15 Score=130.77 Aligned_cols=128 Identities=19% Similarity=0.194 Sum_probs=92.5
Q ss_pred CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194 355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV 434 (558)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 434 (558)
+.++++++.++......+.+++.|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~----------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT----------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC----------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc----------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 56777777776444445667778888887776 56666777777888888888877666677777778888
Q ss_pred EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcc
Q 048194 435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG 507 (558)
Q Consensus 435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 507 (558)
|++++|.+++..|..+.. +++|+.|+|++|.++...+..|..+++|+.|++++|++.+
T Consensus 83 L~Ls~N~l~~i~~~~f~~---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDG---------------LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EECCSSCCCBCCTTTTTT---------------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCccCEeCHHHhCC---------------CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 888888777665555533 6777888888887776666667777788888888777753
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.5e-14 Score=127.82 Aligned_cols=130 Identities=20% Similarity=0.172 Sum_probs=72.1
Q ss_pred CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194 355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV 434 (558)
Q Consensus 355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 434 (558)
+.++++++.++......+.+++.|++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQ---------SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCC---------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCccc---------EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 45566666555443444556666666666655 122233455566666666666665444445556666666
Q ss_pred EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccc
Q 048194 435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGS 508 (558)
Q Consensus 435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 508 (558)
|++++|.+++..+..+.. +++|++|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus 81 L~l~~N~l~~~~~~~~~~---------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDK---------------LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp EECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EECCCCCccccCHHHhhC---------------CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 666666665443333322 55666666666666654444455566666666666666543
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.7e-15 Score=127.76 Aligned_cols=129 Identities=20% Similarity=0.163 Sum_probs=102.2
Q ss_pred CCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccC
Q 048194 373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD 452 (558)
Q Consensus 373 ~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~ 452 (558)
++++.+++++|.++. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+
T Consensus 17 ~~l~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-- 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNE--------GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-- 84 (149)
T ss_dssp GGCSEEECTTCBCBT--------TBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH--
T ss_pred ccCeEEEccCCcCCh--------hHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh--
Confidence 455556666665541 24667778888999999999999865 678889999999999999987555433
Q ss_pred ceeeccccchhhhhhhccceEEECCCCccccc-CchhhcccCCCCeeeCcCCcCccccc---ccccCCCCCCeecCCC
Q 048194 453 APITIKGLDIKLQKILNIFTSIDFSTNNFKGP-ILEDVGLLKSLYGLNLSHNALTGSIP---SSFGNLKRLESLDLSM 526 (558)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~ 526 (558)
..+++|++|++++|.+++. .+..++.+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 85 -------------~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 -------------EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -------------HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -------------hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 3488999999999999874 34788999999999999999996555 4789999999999874
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=5.2e-15 Score=130.64 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=87.1
Q ss_pred CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194 402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF 481 (558)
Q Consensus 402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 481 (558)
+..+.+|+.|++++|.++ .++......++|++|++++|.+++. ..+. .+++|++|++++|.+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~---------------~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFP---------------LLRRLKTLLVNNNRI 76 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCC---------------CCSSCCEEECCSSCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccc---------------cCCCCCEEECCCCcc
Confidence 344556777777777776 3343223333777777777777653 2222 266777777777777
Q ss_pred cccCchhhcccCCCCeeeCcCCcCcccccc--cccCCCCCCeecCCCCcCcccchhh----hcCCCCCCEEeCcCCcCee
Q 048194 482 KGPILEDVGLLKSLYGLNLSHNALTGSIPS--SFGNLKRLESLDLSMNNLSRAIPSQ----LASLYFLSYLNLSYNQLEG 555 (558)
Q Consensus 482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~n~l~~ 555 (558)
++..+..++.+++|++|++++|+++ .+|. .+..+++|+.|++++|+++ ..|.. +..+++|++|++++|.+.+
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7654444577777777777777775 4554 6777777777777777776 34543 6777777777777776543
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=7.5e-14 Score=136.52 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=85.5
Q ss_pred CCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCC-EEecCCCCCCCCCC--CCCCCCC
Q 048194 230 RTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLE-LLNLASCKLREIPN--LKNQSQL 306 (558)
Q Consensus 230 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~-~L~l~~n~l~~l~~--~~~~~~L 306 (558)
.+++|+.+++.+|.++ .++...|..+++|+++++.+| ++... ...|.++++|+ .+++.+ .++.|+. |.++++|
T Consensus 224 ~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~-~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 224 YMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIG-QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp HCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred hcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceeh-HHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 3789999999999988 888889999999999999998 65444 44499999999 999998 8888876 9999999
Q ss_pred CEEecCCCcccccCChhHHhhccccceEEEc
Q 048194 307 QYLYLSENQISREIPNWIWRVSVVGLHCLNL 337 (558)
Q Consensus 307 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 337 (558)
+.+++++|.+....+..|..+.. |+.++.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~--L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVP--SKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCC--CCEEEC
T ss_pred CEEEeCCCccCccchhhhcCCcc--hhhhcc
Confidence 99999999987666667777666 888764
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=3.1e-14 Score=125.64 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=72.5
Q ss_pred CCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc
Q 048194 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL 486 (558)
Q Consensus 407 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 486 (558)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.++. ++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~---------------~~l~~L~~L~L~~N~i~~-~~ 104 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD---------------QALPDLTELILTNNSLVE-LG 104 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH---------------HHCTTCCEEECCSCCCCC-GG
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh---------------hcCCCCCEEECCCCcCCc-ch
Confidence 567777777766643 456666777777777777664322211 236677777777777754 33
Q ss_pred h--hhcccCCCCeeeCcCCcCccccccc----ccCCCCCCeecCCCCcCc
Q 048194 487 E--DVGLLKSLYGLNLSHNALTGSIPSS----FGNLKRLESLDLSMNNLS 530 (558)
Q Consensus 487 ~--~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~N~l~ 530 (558)
. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 105 ~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 105 DLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 3 6778888888999888887 45654 788889999999888775
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=3.3e-12 Score=128.09 Aligned_cols=235 Identities=14% Similarity=0.126 Sum_probs=120.7
Q ss_pred hhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhh
Q 048194 250 LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRV 327 (558)
Q Consensus 250 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 327 (558)
...|..+++|+.+.+..+. . ......|.++++|+.+.+..+ ++.++. +..+..|+.+.+..+... +.......
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~ 229 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK 229 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred hhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc
Confidence 3456666666666665442 1 122233666667777766554 454544 666666776666554321 12222222
Q ss_pred ccccceEEEcCCccccccC--CCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCC
Q 048194 328 SVVGLHCLNLSHNFLVGFQ--APYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRN 405 (558)
Q Consensus 328 ~~~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~ 405 (558)
. .++.+.+.... +.+. ....+..++.+.+..+... .....+..+
T Consensus 230 ~--~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-------------------------------i~~~~F~~~ 275 (394)
T 4fs7_A 230 T--GVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-------------------------------IGGSLFYNC 275 (394)
T ss_dssp C--CCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-------------------------------ECSCTTTTC
T ss_pred C--CCceEEECCCc-eecccccccccccceeEEcCCCcce-------------------------------eeccccccc
Confidence 2 25555554322 1111 1123555555555443221 112334455
Q ss_pred CCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC
Q 048194 406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI 485 (558)
Q Consensus 406 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 485 (558)
..++.+....+.+. ...+..+.+|+.+.+.++ ++......+ ..+.+|+.+++..+ ++...
T Consensus 276 ~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF---------------~~c~~L~~i~lp~~-v~~I~ 335 (394)
T 4fs7_A 276 SGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAF---------------ESCTSLVSIDLPYL-VEEIG 335 (394)
T ss_dssp TTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTT---------------TTCTTCCEECCCTT-CCEEC
T ss_pred cccceeccCceeec---cccccccccccccccccc-cceechhhh---------------cCCCCCCEEEeCCc-ccEEh
Confidence 55555555544322 234555666666666543 322222222 22566666666533 44445
Q ss_pred chhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEE
Q 048194 486 LEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYL 546 (558)
Q Consensus 486 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 546 (558)
...|.+|.+|+.+.+..+ ++.....+|.++++|+.+++..+ +. .+...|.++++|+++
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 566777777777777765 55445566777777777777654 22 223456666666654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=5.2e-16 Score=140.00 Aligned_cols=137 Identities=21% Similarity=0.207 Sum_probs=110.5
Q ss_pred CCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194 397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF 476 (558)
Q Consensus 397 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 476 (558)
.+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+ ..+++|++|++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~---------------~~~~~L~~L~L 100 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD---------------AVADTLEELWI 100 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH---------------HHHHHCSEEEE
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh---------------hcCCcCCEEEC
Confidence 344467788899999999999985 66 8889999999999999987 445433 23689999999
Q ss_pred CCCcccccCchhhcccCCCCeeeCcCCcCccccc-ccccCCCCCCeecCCCCcCcccchh----------hhcCCCCCCE
Q 048194 477 STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIP-SSFGNLKRLESLDLSMNNLSRAIPS----------QLASLYFLSY 545 (558)
Q Consensus 477 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~ 545 (558)
++|.+++ ++ .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++..|. .+..+++|++
T Consensus 101 ~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 101 SYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred cCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 9999986 33 68899999999999999984332 4788999999999999999876654 3788899999
Q ss_pred EeCcCCcCee
Q 048194 546 LNLSYNQLEG 555 (558)
Q Consensus 546 L~l~~n~l~~ 555 (558)
|| +|+++.
T Consensus 179 Ld--~~~i~~ 186 (198)
T 1ds9_A 179 LD--GMPVDV 186 (198)
T ss_dssp EC--CGGGTT
T ss_pred EC--CcccCH
Confidence 87 676654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=2.1e-13 Score=119.31 Aligned_cols=108 Identities=28% Similarity=0.268 Sum_probs=81.3
Q ss_pred CCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc
Q 048194 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL 486 (558)
Q Consensus 407 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 486 (558)
..+.+++++|.++ .+|..+ .++|++|++++|.+++..|..+.. +++|++|+|++|++++..+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~---------------l~~L~~L~Ls~N~l~~l~~ 71 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDR---------------LTQLTRLDLDNNQLTVLPA 71 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT---------------CTTCSEEECCSSCCCCCCT
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcC---------------cccCCEEECCCCCcCccCh
Confidence 3578888888887 456543 578888888888888766665543 7788888888888887666
Q ss_pred hhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCccc
Q 048194 487 EDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA 532 (558)
Q Consensus 487 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 532 (558)
..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++..
T Consensus 72 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 72 GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred hhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 6677888888888888888865555677888888888888877644
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=2e-12 Score=129.26 Aligned_cols=250 Identities=14% Similarity=0.158 Sum_probs=136.7
Q ss_pred ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhH
Q 048194 247 TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWI 324 (558)
Q Consensus 247 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~ 324 (558)
.++...|.++ +|+.+.+..+ ++...... |.++ +|+.+.+.+ .++.|+. |..|++|+.+++++|.++. ++...
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~-i~~I~~~a-F~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~a 199 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEG-LKSIGDMA-FFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPAST 199 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTT-CCEECTTT-TTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTT
T ss_pred EehHhhcccC-CccEEEeCCC-ccEECHHh-cCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhh
Confidence 4444555553 5677766654 43333322 4443 577777765 5565655 6677777777777776653 33332
Q ss_pred HhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCC-CC
Q 048194 325 WRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLP-DT 401 (558)
Q Consensus 325 ~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p-~~ 401 (558)
... .+|+.+.+..+ ++.+... ..|++|+.+++..+ +. .++ ..
T Consensus 200 F~~--~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-------------------------------~I~~~a 244 (401)
T 4fdw_A 200 FVY--AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-------------------------------TIGQEA 244 (401)
T ss_dssp TTT--CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-------------------------------EECTTT
T ss_pred Eee--cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-------------------------------Cccccc
Confidence 222 23777777643 4443332 33677777777654 11 111 12
Q ss_pred CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194 402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF 481 (558)
Q Consensus 402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 481 (558)
|.. ++|+.+.+. +.++......|.+|++|+.+.+.+|.+..... ..+....+..+++|+.+++. +.+
T Consensus 245 F~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~----------~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 245 FRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPE----------AMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp TTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTT----------CEECTTTTTTCTTCCEECCC-TTC
T ss_pred ccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcc----------cEECHHHhhCCccCCeEEeC-Cce
Confidence 222 456666663 33443445566666666666666554431000 00011122336666666666 335
Q ss_pred cccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCC-CCCEEeCcCCc
Q 048194 482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLY-FLSYLNLSYNQ 552 (558)
Q Consensus 482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~n~ 552 (558)
+......|.+|++|+.+.|..+ ++.....+|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 5555666777777777777544 554555667777 777777777776655555566663 56777776554
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=7.6e-12 Score=125.47 Aligned_cols=217 Identities=13% Similarity=0.097 Sum_probs=145.1
Q ss_pred cCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccC
Q 048194 278 YSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALR 355 (558)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~ 355 (558)
|..+.+|+.+.+.++ ++.++. +..+.+|+.+++..+ +.......+..... |+.+.+..+...-......+..|+
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~--L~~i~~~~~~~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL--LENMEFPNSLYYLGDFALSKTGVK 233 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT--CCBCCCCTTCCEECTTTTTTCCCC
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccc--cceeecCCCceEeehhhcccCCCc
Confidence 778889999998755 445655 788888888888765 32222233333333 555555443322111112233444
Q ss_pred EEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEE
Q 048194 356 FIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVL 435 (558)
Q Consensus 356 ~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 435 (558)
.+.+.. ..-. .-...+..+..++.+.+..+... .....+..++.++.+
T Consensus 234 ~i~ip~---------------------~~~~----------i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 234 NIIIPD---------------------SFTE----------LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKV 281 (394)
T ss_dssp EEEECT---------------------TCCE----------ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEE
T ss_pred eEEECC---------------------Ccee----------cccccccccccceeEEcCCCcce-eecccccccccccee
Confidence 443322 1110 11234667788999998877543 566678888999988
Q ss_pred ECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccC
Q 048194 436 NLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGN 515 (558)
Q Consensus 436 ~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 515 (558)
....+.+. .. .+..+.+|+.+.+..+ ++......|.++.+|+.+++.++ ++.....+|.+
T Consensus 282 ~~~~~~i~----~~--------------~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 341 (394)
T 4fs7_A 282 IYGSVIVP----EK--------------TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG 341 (394)
T ss_dssp EECSSEEC----TT--------------TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred ccCceeec----cc--------------cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence 88765432 11 1223788999999765 66566788999999999999854 76556788999
Q ss_pred CCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCC
Q 048194 516 LKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551 (558)
Q Consensus 516 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 551 (558)
+.+|+.+++..+ ++......|.++++|+.+++..+
T Consensus 342 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 999999999887 76667788999999999999765
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=7.2e-12 Score=125.17 Aligned_cols=238 Identities=13% Similarity=0.162 Sum_probs=109.7
Q ss_pred CCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194 90 LHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC 169 (558)
Q Consensus 90 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 169 (558)
+..++.+.+.++ +... -...|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+. .++...|.++++|+.
T Consensus 112 ~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 355555555432 3222 23445543 4666666544 433334445442 466666654 333 333234566666666
Q ss_pred EEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC
Q 048194 170 AVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ 249 (558)
Q Consensus 170 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 249 (558)
+++.+|.++. ++.......+|+.+.+..+ +.......| ..+++|+.+++..+ ++ .++
T Consensus 185 l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF-------------------~~~~~L~~l~l~~~-l~-~I~ 241 (401)
T 4fdw_A 185 ADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAF-------------------LKTSQLKTIEIPEN-VS-TIG 241 (401)
T ss_dssp EECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTT-------------------TTCTTCCCEECCTT-CC-EEC
T ss_pred eecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHh-------------------hCCCCCCEEecCCC-cc-Ccc
Confidence 6666655552 3322222456666666533 332222222 44555555555443 22 344
Q ss_pred hhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-----CCCC--CCCCCCCCEEecCCCcccccCCh
Q 048194 250 LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-----EIPN--LKNQSQLQYLYLSENQISREIPN 322 (558)
Q Consensus 250 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-----~l~~--~~~~~~L~~L~l~~n~l~~~~~~ 322 (558)
...|.+ .+|+.+.+. +.++...... |.++++|+.+.+.++.+. .|+. |..+++|+.+++.+ .+......
T Consensus 242 ~~aF~~-~~L~~i~lp-~~i~~I~~~a-F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~ 317 (401)
T 4fdw_A 242 QEAFRE-SGITTVKLP-NGVTNIASRA-FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG 317 (401)
T ss_dssp TTTTTT-CCCSEEEEE-TTCCEECTTT-TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT
T ss_pred cccccc-CCccEEEeC-CCccEEChhH-hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh
Confidence 444444 455555552 2233222222 555555555555554443 3443 55555555555553 23322233
Q ss_pred hHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCc
Q 048194 323 WIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLR 365 (558)
Q Consensus 323 ~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~ 365 (558)
.|..+.. |+.+.+..+ ++.+... ..+ +|+.+++.+|...
T Consensus 318 aF~~c~~--L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 318 LLGGNRK--VTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTTTCCS--CCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred hhcCCCC--ccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 3333333 555555433 3332222 224 5666666555443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=5.7e-13 Score=116.93 Aligned_cols=106 Identities=25% Similarity=0.231 Sum_probs=80.3
Q ss_pred CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE 487 (558)
Q Consensus 408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 487 (558)
-+.+++++|.++ .+|..+ .++|++|++++|.+++..|..+.. +++|++|+|++|++++..+.
T Consensus 14 ~~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~---------------l~~L~~L~Ls~N~l~~i~~~ 75 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDH---------------LVNLQQLYFNSNKLTAIPTG 75 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSCCCCCCTT
T ss_pred CcEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcC---------------CcCCCEEECCCCCCCccChh
Confidence 467888888886 566543 578888888888888776666544 77888888888888876666
Q ss_pred hhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194 488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
.|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++..
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 67788888888888888885555557888888888888888764
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.5e-12 Score=113.82 Aligned_cols=108 Identities=23% Similarity=0.245 Sum_probs=90.8
Q ss_pred CCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCc
Q 048194 374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA 453 (558)
Q Consensus 374 ~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~ 453 (558)
+.+.+++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..
T Consensus 10 ~~~~l~~s~n~l~----------~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~- 76 (170)
T 3g39_A 10 SGTTVDCSGKSLA----------SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK- 76 (170)
T ss_dssp ETTEEECTTSCCS----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-
T ss_pred CCCEEEeCCCCcC----------ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC-
Confidence 4678999999988 5666553 77999999999999888888999999999999999998665544433
Q ss_pred eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccc
Q 048194 454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGS 508 (558)
Q Consensus 454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 508 (558)
+++|++|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus 77 --------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 77 --------------LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred --------------CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88999999999999987777799999999999999998754
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=3.6e-15 Score=134.46 Aligned_cols=131 Identities=21% Similarity=0.212 Sum_probs=109.6
Q ss_pred CCCCEEECcCCcCCccCCc------ccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194 406 CLLQTLDLNGNRPQGTVPK------SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479 (558)
Q Consensus 406 ~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 479 (558)
..++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+ ..+++|++|++++|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~---------------~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SL---------------SGMENLRILSLGRN 80 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CH---------------HHHTTCCEEEEEEE
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cc---------------ccCCCCCEEECCCC
Confidence 4466666666666666555 89999999999999999986 44 33 34899999999999
Q ss_pred cccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccch-hhhcCCCCCCEEeCcCCcCeee
Q 048194 480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP-SQLASLYFLSYLNLSYNQLEGR 556 (558)
Q Consensus 480 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 556 (558)
.++ .+|..+..+++|++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.
T Consensus 81 ~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 81 LIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred Ccc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 999 467778888999999999999995 55 68899999999999999985433 5789999999999999999775
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=3e-12 Score=112.37 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=90.5
Q ss_pred CCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCc
Q 048194 374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA 453 (558)
Q Consensus 374 ~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~ 453 (558)
.-+.+++++|.+. .+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+.
T Consensus 13 ~~~~l~~~~n~l~----------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-- 78 (174)
T 2r9u_A 13 DQTLVNCQNIRLA----------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD-- 78 (174)
T ss_dssp CSSEEECCSSCCS----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred CCcEEEeCCCCCC----------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC--
Confidence 3578999999987 6676554 7899999999999988888999999999999999999875444443
Q ss_pred eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcc
Q 048194 454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG 507 (558)
Q Consensus 454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 507 (558)
.+++|++|+|++|.+++..+..|..+++|+.|++++|++..
T Consensus 79 -------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 79 -------------KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp -------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred -------------CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 38899999999999997766679999999999999999984
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=2.8e-13 Score=134.10 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=19.5
Q ss_pred CCCCEEECcCCcCCcc----CCcccccCCCCCEEECCCCcCc
Q 048194 406 CLLQTLDLNGNRPQGT----VPKSIAKCKMLEVLNLGNNQFS 443 (558)
Q Consensus 406 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~ 443 (558)
++|++|++++|.+++. ++..+..+++|++|+|++|.++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 3455666666655432 2233344555555555555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.8e-13 Score=135.44 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=109.8
Q ss_pred CCccCEEEcccccCccc--------CCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccC
Q 048194 351 IPALRFIDLISNQLRGN--------IHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTV 422 (558)
Q Consensus 351 ~~~L~~L~l~~n~~~~~--------~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 422 (558)
++.|+.|++++|.++.. +.....+|+.|++++|.+++.. +......+.+|++|++++|.+++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~--------~~~l~~~L~~L~~L~Ls~n~l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG--------LRTLLPVFLRARKLGLQLNSLGPEA 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH--------HHHTHHHHHTEEEEECCSSCCCHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH--------HHHHHHHHHhccHhhcCCCCCCHHH
Confidence 56788999999988732 1122357888888888775321 1111122345778888888776543
Q ss_pred Cccc-----ccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC----chhhcccC
Q 048194 423 PKSI-----AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI----LEDVGLLK 493 (558)
Q Consensus 423 ~~~l-----~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~ 493 (558)
...+ ...++|++|++++|.+++.....+ .......++|++|+|++|.+++.. ...+..++
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-----------~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL-----------MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH-----------HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHH-----------HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 3333 235678888888887753211111 112234667888888888776532 34456677
Q ss_pred CCCeeeCcCCcCccc----ccccccCCCCCCeecCCCCcCcccchhhhcCCC---C--CCEEe--CcCCcCee
Q 048194 494 SLYGLNLSHNALTGS----IPSSFGNLKRLESLDLSMNNLSRAIPSQLASLY---F--LSYLN--LSYNQLEG 555 (558)
Q Consensus 494 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~--L~~L~--l~~n~l~~ 555 (558)
+|++|+|++|.|++. ++..+...++|++|||++|.++......+..+. . |+.+. +.+|.+++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 788888888877643 334455667788888888887765554444332 1 55555 55555543
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.21 E-value=3.5e-09 Score=106.01 Aligned_cols=132 Identities=12% Similarity=0.143 Sum_probs=82.2
Q ss_pred CCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479 (558)
Q Consensus 400 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 479 (558)
..|..+..|+.+.+..+... .....+.++++|+.+.+.. .++......+ ..+.+|+++++..+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF---------------~~c~~L~~i~lp~~ 321 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVF---------------AGCISLKSIDIPEG 321 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTT---------------TTCTTCCEEECCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceee---------------cCCCCcCEEEeCCc
Confidence 34666777777777655432 4556677788888888753 3332222222 23777888888654
Q ss_pred cccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcC
Q 048194 480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553 (558)
Q Consensus 480 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l 553 (558)
++......|.+|.+|+++.+..+ ++.....+|.++++|+.+++.++... ...+.....|+.+.+..+.+
T Consensus 322 -v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 322 -ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred -ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 55556678888999999998754 66455677888999999999887653 24566778888888877654
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=9e-11 Score=115.57 Aligned_cols=105 Identities=20% Similarity=0.169 Sum_probs=87.4
Q ss_pred CEEECcCC-cCCccCCcccccCCCCCEEECCC-CcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc
Q 048194 409 QTLDLNGN-RPQGTVPKSIAKCKMLEVLNLGN-NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL 486 (558)
Q Consensus 409 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 486 (558)
..++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..+.. +++|+.|+|++|++++..+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~---------------l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRG---------------LGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS---------------CCCCSEEECCSSCCCEECT
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc---------------ccCCCEEECCCCccceeCH
Confidence 46789988 888 5777 99999999999996 9998776666644 8899999999999998888
Q ss_pred hhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194 487 EDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 487 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
..|+.+++|+.|+|++|+|++..+..+..++ |+.|+|.+|.+..
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8899999999999999999865555555555 9999999999874
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.13 E-value=1.8e-08 Score=100.73 Aligned_cols=109 Identities=11% Similarity=0.129 Sum_probs=67.9
Q ss_pred CCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479 (558)
Q Consensus 400 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 479 (558)
..|..+..|+.+.+.. .++......|.+|.+|+.+.+..+ ++......+ ..+.+|+++.+..+
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF---------------~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAF---------------AGCEQLERIAIPSS 344 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT---------------TTCTTCCEEEECTT
T ss_pred cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHh---------------hCCCCCCEEEECcc
Confidence 3466677788888853 455455567778888888888653 333222233 33788888888644
Q ss_pred cccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcC
Q 048194 480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNL 529 (558)
Q Consensus 480 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l 529 (558)
++......|.+|++|+.+++.++.... .++.....|+.+.+..|.+
T Consensus 345 -v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 345 -VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred -cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 665667789999999999999876541 4577788899888877755
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.9e-10 Score=113.27 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=92.7
Q ss_pred CcEEEccCC-cccccCCCCCccCCCCCCCCCCCCCCEEECcC-CcCCccCCcccccCCCCCEEECCCCcCcccCCccccC
Q 048194 375 PIYIDFSNN-NFTSSIPADTVNGTLPDTFPRNCLLQTLDLNG-NRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD 452 (558)
Q Consensus 375 l~~l~l~~n-~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~ 452 (558)
-..++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+++..|..+..
T Consensus 10 ~~~v~~~~~n~l~----------~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 78 (347)
T 2ifg_A 10 SSGLRCTRDGALD----------SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78 (347)
T ss_dssp SSCEECCSSCCCT----------TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred CCEEEcCCCCCCC----------ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC
Confidence 356788887 787 6888 99999999999996 9999888889999999999999999999888776654
Q ss_pred ceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcc
Q 048194 453 APITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG 507 (558)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 507 (558)
+++|+.|+|++|++++..+..|..++ |+.|+|.+|.+..
T Consensus 79 ---------------l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 79 ---------------TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ---------------CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ---------------CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 89999999999999987766676666 9999999999984
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.80 E-value=9.5e-07 Score=87.75 Aligned_cols=282 Identities=10% Similarity=0.082 Sum_probs=133.6
Q ss_pred CCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCC
Q 048194 229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQL 306 (558)
Q Consensus 229 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L 306 (558)
....+|+.+.+.. .++ .++..+|.++.+|+.+.+..+ ++...... |.++ .|+.+.+.. .++.+.. +.. .+|
T Consensus 43 ~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~a-F~~c-~l~~i~~~~-~l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 43 KDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGA-FADT-KLQSYTGME-RVKKFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTT-TTTC-CCCEEEECT-TCCEECTTTTTT-CCC
T ss_pred ccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhh-hcCC-CCceEECCc-eeeEeccceecc-CCc
Confidence 3445677777754 243 666677888888888888654 44333333 6665 577777654 3555655 444 378
Q ss_pred CEEecCCCcccccCChhHHhhccccceEEEcCCccccccC--CCCCCCccCEEEcccccCcccC---------------C
Q 048194 307 QYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ--APYSIPALRFIDLISNQLRGNI---------------H 369 (558)
Q Consensus 307 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~l~~n~~~~~~---------------~ 369 (558)
+.+.+..+.. ......+... .++.+.+..+ ++... ....+..++.+.+..+...... .
T Consensus 116 ~~i~lp~~~~-~i~~~~F~~~---~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 116 DDFEFPGATT-EIGNYIFYNS---SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp SEEECCTTCC-EECTTTTTTC---CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred ccccCCCccc-cccccccccc---eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 8888866532 1222222221 2554444332 11111 1123555665555443221000 0
Q ss_pred CCCCCCcEEEccCCccccc-------------CCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEE
Q 048194 370 QLPNNPIYIDFSNNNFTSS-------------IPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN 436 (558)
Q Consensus 370 ~~~~~l~~l~l~~n~~~~~-------------~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 436 (558)
.....+..+.+......-. .........-...+..+..|+.+.+..+ ++......+.++.+|+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 0001122222111110000 0000000011122333444444444433 2223333444444555544
Q ss_pred CCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCC
Q 048194 437 LGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNL 516 (558)
Q Consensus 437 l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 516 (558)
+..+ +.. .....+..+++|+.+.+.++.++......|.+|.+|+.+.|..+ ++.....+|.++
T Consensus 270 l~~~-i~~---------------i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 270 FYAK-VKT---------------VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp ECCC-CSE---------------ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cccc-cee---------------ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 4322 111 11122334677777777776666556667777777777777643 543445567777
Q ss_pred CCCCeecCCCCcCcccchhhhcCCC
Q 048194 517 KRLESLDLSMNNLSRAIPSQLASLY 541 (558)
Q Consensus 517 ~~L~~L~L~~N~l~~~~~~~~~~l~ 541 (558)
.+|+.+.+..+ ++.+....|.+..
T Consensus 333 ~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 333 KALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCCCEEEECCc-cCEEchhHhhCCC
Confidence 77777777554 4444445565543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=7.1e-09 Score=101.52 Aligned_cols=104 Identities=17% Similarity=0.135 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCCccc-c-------ccCcccccCCCCCCEEECCCCCCCC--------CccchhhcCCCCCCEEeCcCCcC
Q 048194 65 GHVIGLDLSTESISG-G-------IENAAILFSLHYLRSLNLARTSFNG--------TQISSKLANISSLTYLNLSDAGF 128 (558)
Q Consensus 65 ~~v~~L~l~~~~~~~-~-------~~~~~~~~~l~~L~~L~L~~n~~~~--------~~~~~~~~~l~~L~~L~L~~n~l 128 (558)
.+|+.|.+......+ . +.. .+..+++|+.|.+....... ..+...+..+|+|+.|+|+++.-
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~--s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVE--NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHT--THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHH--hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 467777776554332 1 111 24567788888876543211 11445566777788888777631
Q ss_pred ccCCChhccCCCCCcEEecccccccccc-cchhhcCCCCccEEEcc
Q 048194 129 AGQIPVQISRMARLVALDFSFNQFSGSI-SSIRWEHLLNLVCAVLS 173 (558)
Q Consensus 129 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~ 173 (558)
. .++. +. +++|++|++..+.+.... ..+....+++|++|+|+
T Consensus 185 l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 185 L-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp C-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred c-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 1 2333 32 677777777777665433 22222356777777764
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=5.9e-09 Score=102.11 Aligned_cols=137 Identities=17% Similarity=0.165 Sum_probs=82.8
Q ss_pred CCCCCEEECcCCcCCccCCcccc--cCCCCCEEECCCC--cCcccC-CccccCceeeccccchhhhhhhccceEEECCCC
Q 048194 405 NCLLQTLDLNGNRPQGTVPKSIA--KCKMLEVLNLGNN--QFSDKF-PCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479 (558)
Q Consensus 405 ~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n--~i~~~~-p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 479 (558)
.++|++|++..+.+.......+. .+|+|+.|+|+.+ ...+.. ...+.. .-....+++|+.|+|++|
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~---------~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP---------LFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG---------GSCTTTCTTCCEEEEESC
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH---------HHhcCCCCCcCEEeCCCC
Confidence 56788888888777654444444 6788888887532 211110 000000 000023678888888888
Q ss_pred cccccCchhhc---ccCCCCeeeCcCCcCccc----ccccccCCCCCCeecCCCCcCcccchhhhcC-CCCCCEEeCcCC
Q 048194 480 NFKGPILEDVG---LLKSLYGLNLSHNALTGS----IPSSFGNLKRLESLDLSMNNLSRAIPSQLAS-LYFLSYLNLSYN 551 (558)
Q Consensus 480 ~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~n 551 (558)
.+++..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+.. + ...++++++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 77654333332 477888888888888754 3344456788888888888887655444443 2 356777766
Q ss_pred c
Q 048194 552 Q 552 (558)
Q Consensus 552 ~ 552 (558)
+
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 5
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.74 E-value=3e-06 Score=84.11 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=77.9
Q ss_pred CCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN 479 (558)
Q Consensus 400 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 479 (558)
..+..+.+|+.+.+..+ +.......+..|++|+.+.+.++.++......+.. +.+|+.++|..+
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~---------------c~~L~~i~lp~~ 320 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD---------------CVKLSSVTLPTA 320 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT---------------CTTCCEEECCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC---------------CCCCCEEEcCcc
Confidence 45777889999999765 55455667899999999999988877554444443 899999999754
Q ss_pred cccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCC
Q 048194 480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRL 519 (558)
Q Consensus 480 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 519 (558)
++......|.+|.+|+++.+..+ ++.....+|.++..+
T Consensus 321 -l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 321 -LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp -CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred -ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 66666788999999999999865 664556677776543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=4.9e-09 Score=92.66 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=42.0
Q ss_pred ccceEEECCCCccccc----CchhhcccCCCCeeeCcCCcCccc----ccccccCCCCCCeecC--CCCcCcccc----h
Q 048194 469 NIFTSIDFSTNNFKGP----ILEDVGLLKSLYGLNLSHNALTGS----IPSSFGNLKRLESLDL--SMNNLSRAI----P 534 (558)
Q Consensus 469 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L--~~N~l~~~~----~ 534 (558)
++|++|+|++|.+... +...+...++|++|+|++|.|.+. +...+...+.|++|+| ++|.++... .
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3444444444444322 122233345555555555555532 2344455555666666 556655332 2
Q ss_pred hhhcCCCCCCEEeCcCCcCe
Q 048194 535 SQLASLYFLSYLNLSYNQLE 554 (558)
Q Consensus 535 ~~~~~l~~L~~L~l~~n~l~ 554 (558)
+.+...++|++|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 33444456666666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=1.6e-08 Score=89.31 Aligned_cols=120 Identities=14% Similarity=0.202 Sum_probs=90.3
Q ss_pred CCCCCCCCCEEECcCC-cCCcc----CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEE
Q 048194 401 TFPRNCLLQTLDLNGN-RPQGT----VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSID 475 (558)
Q Consensus 401 ~~~~~~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 475 (558)
.+...+.|++|++++| .+... +...+...++|++|+|++|.+.+.....+ .......++|++|+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l-----------~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL-----------AEMLKVNNTLKSLN 99 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH-----------HHHHHHCSSCCEEE
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH-----------HHHHHhCCCcCEEE
Confidence 3456778999999999 88753 44556778899999999999875332221 12234457899999
Q ss_pred CCCCccccc----CchhhcccCCCCeeeC--cCCcCccc----ccccccCCCCCCeecCCCCcCcc
Q 048194 476 FSTNNFKGP----ILEDVGLLKSLYGLNL--SHNALTGS----IPSSFGNLKRLESLDLSMNNLSR 531 (558)
Q Consensus 476 Ls~n~l~~~----~~~~~~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~ 531 (558)
|++|.++.. +...+...++|++|+| ++|.|... +...+...+.|+.|+|++|.+..
T Consensus 100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 999999864 3455677889999999 88999854 34556677999999999999863
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=4.7e-08 Score=90.68 Aligned_cols=80 Identities=25% Similarity=0.221 Sum_probs=62.1
Q ss_pred hhhccceEEECCCCccccc--CchhhcccCCCCeeeCcCCcCcccccccccCCC--CCCeecCCCCcCcccch-------
Q 048194 466 KILNIFTSIDFSTNNFKGP--ILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLK--RLESLDLSMNNLSRAIP------- 534 (558)
Q Consensus 466 ~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~N~l~~~~~------- 534 (558)
+.+++|++|+|++|.+++. ++..++.+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4578999999999999873 346677899999999999999854 3344444 89999999999986554
Q ss_pred hhhcCCCCCCEEe
Q 048194 535 SQLASLYFLSYLN 547 (558)
Q Consensus 535 ~~~~~l~~L~~L~ 547 (558)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3466788888876
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=8.2e-08 Score=82.46 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=53.0
Q ss_pred CCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCc-ccccCchhhccc----CCCCeeeCcCCc
Q 048194 430 KMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNN-FKGPILEDVGLL----KSLYGLNLSHNA 504 (558)
Q Consensus 430 ~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~l~~n~ 504 (558)
..|+.||+++|.+++..-. ....+++|++|+|++|. +++.....++.+ ++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~---------------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD---------------HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG---------------GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHH---------------HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 4677777777776643222 22347777777777774 665444455543 367777777764
Q ss_pred -CcccccccccCCCCCCeecCCCCc
Q 048194 505 -LTGSIPSSFGNLKRLESLDLSMNN 528 (558)
Q Consensus 505 -l~~~~~~~l~~l~~L~~L~L~~N~ 528 (558)
|++..-..+.++++|+.|+|++|.
T Consensus 126 ~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 126 NVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred cCCHHHHHHHhcCCCCCEEECCCCC
Confidence 666555566677777777777774
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=5e-07 Score=83.77 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=56.9
Q ss_pred ccCCCCCEEECCCCcCccc--CCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccC--CCCeeeCcC
Q 048194 427 AKCKMLEVLNLGNNQFSDK--FPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLK--SLYGLNLSH 502 (558)
Q Consensus 427 ~~l~~L~~L~l~~n~i~~~--~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~l~~ 502 (558)
.++++|+.|+|++|.+++. +|.. ...+++|+.|+|++|.+++. ..+..+. +|++|+|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~---------------~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~ 229 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSI---------------VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDG 229 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTH---------------HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhH---------------HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccC
Confidence 5678888888888888752 2222 23578888888888888764 3444455 888888888
Q ss_pred CcCccccc-------ccccCCCCCCeec
Q 048194 503 NALTGSIP-------SSFGNLKRLESLD 523 (558)
Q Consensus 503 n~l~~~~~-------~~l~~l~~L~~L~ 523 (558)
|.+.+.+| ..+..+++|+.||
T Consensus 230 Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 230 NSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp STTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcCccccCcchhHHHHHHHHCcccCeEC
Confidence 88876555 2356778888876
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=1.5e-06 Score=74.66 Aligned_cols=94 Identities=12% Similarity=0.072 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCc-CcccCCccccCceeeccccchhhhhh----hccce
Q 048194 398 LPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQ-FSDKFPCSLYDAPITIKGLDIKLQKI----LNIFT 472 (558)
Q Consensus 398 ~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~~~~~~~~~~~~----~~~L~ 472 (558)
+|.....-..|+.||++++.++......+..+++|+.|+|++|. +++. .+..... .++|+
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~---------------gL~~L~~~~~~~~~L~ 117 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG---------------CLERLSQLENLQKSML 117 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH---------------HHHHHHTCHHHHHHCC
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH---------------HHHHHHhcccccCCCC
Confidence 44443333569999999999987777778899999999999995 5542 2222322 35799
Q ss_pred EEECCCCc-ccccCchhhcccCCCCeeeCcCCc-Cc
Q 048194 473 SIDFSTNN-FKGPILEDVGLLKSLYGLNLSHNA-LT 506 (558)
Q Consensus 473 ~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~ 506 (558)
+|+|++|. ++......+..+++|+.|++++|. ++
T Consensus 118 ~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 118 EMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp EEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred EEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 99999985 887777788899999999999996 55
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.48 E-value=6.2e-05 Score=65.85 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=20.2
Q ss_pred CCCCCEEECcCC-cCCcc----CCcccccCCCCCEEECCCCcCcc
Q 048194 405 NCLLQTLDLNGN-RPQGT----VPKSIAKCKMLEVLNLGNNQFSD 444 (558)
Q Consensus 405 ~~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~i~~ 444 (558)
-+.|++|+|++| .+... +.+.+..-..|+.|+|++|.+.+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence 345666666553 45432 33344444555556665555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=6.4e-05 Score=65.75 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=79.2
Q ss_pred CcccccCCCCCEEECCCC-cCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc----hhhcccCCCCe
Q 048194 423 PKSIAKCKMLEVLNLGNN-QFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL----EDVGLLKSLYG 497 (558)
Q Consensus 423 ~~~l~~l~~L~~L~l~~n-~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~ 497 (558)
...+.+-+.|+.|+|++| .|.+.....+ .+.+..-+.|+.|+|++|.+..... ..+..-+.|++
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~l-----------a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~ 102 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSL-----------IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRV 102 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHH-----------HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCE
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHH-----------HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCe
Confidence 334456678899999885 6653322111 1223335678999999998875433 33445688999
Q ss_pred eeCcCCcCccc----ccccccCCCCCCeecCCCC---cCccc----chhhhcCCCCCCEEeCcCCcCe
Q 048194 498 LNLSHNALTGS----IPSSFGNLKRLESLDLSMN---NLSRA----IPSQLASLYFLSYLNLSYNQLE 554 (558)
Q Consensus 498 L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N---~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 554 (558)
|+|++|+|.+. +-+++...+.|++|+|++| .+... +.+.+..-++|+.|+++.|.+.
T Consensus 103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred EecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 99999988753 3345666678999999865 44432 3455666678889988877643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.003 Score=51.38 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=23.5
Q ss_pred hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCc
Q 048194 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT 506 (558)
Q Consensus 468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 506 (558)
.++|+.|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 345566666666666555555666666666666666554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.003 Score=51.40 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=44.7
Q ss_pred eEEECCCCccc-ccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc
Q 048194 472 TSIDFSTNNFK-GPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS 530 (558)
Q Consensus 472 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 530 (558)
..++-+++.++ ..+|..+ .++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888887 2355443 357999999999999666667888999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.57 E-value=19 Score=27.03 Aligned_cols=44 Identities=16% Similarity=0.016 Sum_probs=23.4
Q ss_pred cccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCC
Q 048194 482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM 526 (558)
Q Consensus 482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 526 (558)
+.+....|.+|.+|+++.|..+ ++.....+|.++.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3334445555666666666543 3334445566666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.71 E-value=55 Score=24.38 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=22.8
Q ss_pred CccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccC
Q 048194 128 FAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSD 174 (558)
Q Consensus 128 l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 174 (558)
++..-...|.++..|+.+.+..+ ++ .+...+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 33333445555666666655543 22 33222466666666666554
Done!