Query 048196
Match_columns 115
No_of_seqs 139 out of 1112
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:18:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 99.9 6.5E-28 1.4E-32 170.2 9.2 115 1-115 227-342 (342)
2 PF00891 Methyltransf_2: O-met 99.9 9.8E-26 2.1E-30 154.7 6.0 91 1-92 149-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 99.7 1.6E-17 3.5E-22 117.7 9.5 99 1-102 205-305 (306)
4 PF05891 Methyltransf_PK: AdoM 99.4 3.4E-12 7.3E-17 86.0 7.2 80 11-104 123-202 (218)
5 TIGR00740 methyltransferase, p 99.3 4.9E-13 1.1E-17 91.7 2.5 105 2-111 113-235 (239)
6 PLN02232 ubiquinone biosynthes 99.2 4E-11 8.6E-16 77.9 6.3 108 2-113 33-158 (160)
7 PLN02233 ubiquinone biosynthes 99.2 2.5E-10 5.4E-15 79.5 10.1 109 2-114 134-260 (261)
8 PTZ00098 phosphoethanolamine N 99.2 2.8E-10 6E-15 79.4 10.0 96 2-105 106-204 (263)
9 PF01209 Ubie_methyltran: ubiE 99.2 3.3E-11 7.1E-16 82.7 3.9 109 2-115 105-233 (233)
10 PRK15451 tRNA cmo(5)U34 methyl 99.1 1.4E-10 3.1E-15 80.1 6.3 100 2-101 116-228 (247)
11 PRK00216 ubiE ubiquinone/menaq 99.1 1.4E-09 3E-14 73.9 9.9 109 2-115 110-238 (239)
12 TIGR02752 MenG_heptapren 2-hep 99.0 1.9E-09 4E-14 73.5 8.9 109 2-115 103-231 (231)
13 COG2226 UbiE Methylase involve 99.0 4.2E-09 9E-14 72.4 9.0 109 2-115 108-237 (238)
14 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 4.6E-09 9.9E-14 70.7 9.1 109 2-115 95-223 (223)
15 PLN02490 MPBQ/MSBQ methyltrans 99.0 4E-09 8.8E-14 76.0 9.1 89 2-105 167-258 (340)
16 PRK11873 arsM arsenite S-adeno 99.0 4.6E-09 1E-13 73.3 9.0 93 2-103 135-230 (272)
17 PRK15068 tRNA mo(5)U34 methylt 99.0 6.8E-09 1.5E-13 74.4 9.4 84 11-104 190-275 (322)
18 PF13489 Methyltransf_23: Meth 98.9 2.9E-09 6.4E-14 68.1 6.2 82 11-100 79-160 (161)
19 PLN02336 phosphoethanolamine N 98.9 8.4E-09 1.8E-13 77.2 9.4 92 2-104 321-415 (475)
20 PLN02244 tocopherol O-methyltr 98.9 2.2E-08 4.7E-13 72.3 9.9 101 2-105 175-280 (340)
21 TIGR00452 methyltransferase, p 98.9 2.4E-08 5.3E-13 71.3 9.0 84 11-104 189-274 (314)
22 PF06080 DUF938: Protein of un 98.8 4.3E-08 9.3E-13 65.9 8.4 102 11-115 103-204 (204)
23 smart00828 PKS_MT Methyltransf 98.7 8.2E-08 1.8E-12 65.1 8.5 88 2-105 57-146 (224)
24 PRK11207 tellurite resistance 98.7 3.2E-07 6.9E-12 61.5 9.3 82 2-101 85-168 (197)
25 PRK14103 trans-aconitate 2-met 98.7 1.3E-07 2.8E-12 65.5 7.7 88 11-100 90-181 (255)
26 PLN02396 hexaprenyldihydroxybe 98.6 7.6E-08 1.7E-12 69.0 5.6 89 11-104 199-290 (322)
27 PRK08317 hypothetical protein; 98.6 3.1E-07 6.8E-12 62.2 8.0 97 2-103 76-176 (241)
28 KOG1540 Ubiquinone biosynthesi 98.6 3.6E-07 7.8E-12 63.3 7.2 93 2-100 166-278 (296)
29 PLN02336 phosphoethanolamine N 98.5 6.7E-07 1.4E-11 67.0 7.8 76 11-100 104-179 (475)
30 PF08241 Methyltransf_11: Meth 98.5 1.2E-07 2.6E-12 55.3 2.9 44 2-47 49-95 (95)
31 PRK11036 putative S-adenosyl-L 98.5 3.4E-07 7.3E-12 63.5 5.4 95 11-108 113-212 (255)
32 TIGR00477 tehB tellurite resis 98.5 1.9E-06 4.1E-11 57.6 8.8 74 11-102 95-168 (195)
33 PF11968 DUF3321: Putative met 98.5 1.3E-06 2.8E-11 59.1 7.9 82 2-105 90-183 (219)
34 smart00138 MeTrc Methyltransfe 98.4 4.6E-07 1E-11 63.3 5.2 48 2-49 192-242 (264)
35 PF02353 CMAS: Mycolic acid cy 98.3 1.2E-06 2.6E-11 61.6 5.2 92 10-104 127-218 (273)
36 PF08003 Methyltransf_9: Prote 98.3 5.1E-06 1.1E-10 59.0 8.2 83 11-104 183-268 (315)
37 TIGR03438 probable methyltrans 98.3 1.1E-05 2.4E-10 57.4 9.9 46 2-47 122-175 (301)
38 KOG2361 Predicted methyltransf 98.2 4.6E-06 9.9E-11 57.3 6.6 87 12-101 146-235 (264)
39 TIGR00537 hemK_rel_arch HemK-r 98.2 3E-05 6.5E-10 51.0 9.8 85 2-115 73-177 (179)
40 PRK12335 tellurite resistance 98.2 1.4E-05 2.9E-10 56.5 8.6 82 3-102 175-258 (287)
41 PRK05134 bifunctional 3-demeth 98.2 6.5E-06 1.4E-10 56.1 6.7 88 11-103 115-205 (233)
42 PF04672 Methyltransf_19: S-ad 98.2 2.2E-06 4.7E-11 59.9 3.8 80 13-100 153-233 (267)
43 TIGR01983 UbiG ubiquinone bios 98.2 7.5E-06 1.6E-10 55.4 6.3 88 11-103 113-203 (224)
44 PRK10611 chemotaxis methyltran 98.1 4.3E-06 9.3E-11 59.2 4.6 48 2-49 211-262 (287)
45 TIGR03840 TMPT_Se_Te thiopurin 98.1 5.6E-05 1.2E-09 51.4 9.9 80 2-101 101-185 (213)
46 PF13847 Methyltransf_31: Meth 98.1 1.5E-06 3.3E-11 55.6 1.3 88 2-95 61-152 (152)
47 PRK11705 cyclopropane fatty ac 98.1 4.5E-05 9.9E-10 56.0 9.0 86 11-105 229-314 (383)
48 PRK05785 hypothetical protein; 98.0 3.3E-05 7.2E-10 52.8 7.7 109 2-115 99-224 (226)
49 PF01739 CheR: CheR methyltran 98.0 4.2E-06 9.1E-11 56.2 3.2 48 2-49 125-175 (196)
50 PLN02585 magnesium protoporphy 98.0 2.9E-05 6.2E-10 55.7 7.3 98 11-114 213-313 (315)
51 TIGR02021 BchM-ChlM magnesium 98.0 3.8E-05 8.2E-10 52.0 7.5 88 10-105 119-208 (219)
52 TIGR02072 BioC biotin biosynth 98.0 2.3E-05 4.9E-10 53.1 6.4 85 2-101 87-174 (240)
53 PRK06922 hypothetical protein; 98.0 1E-05 2.2E-10 62.7 4.9 45 11-55 488-543 (677)
54 PRK04266 fibrillarin; Provisio 98.0 5.4E-05 1.2E-09 51.9 8.0 77 11-113 142-223 (226)
55 PF08242 Methyltransf_12: Meth 98.0 7E-06 1.5E-10 48.7 2.8 33 11-45 67-99 (99)
56 PRK06202 hypothetical protein; 97.9 3.9E-05 8.4E-10 52.4 6.0 87 11-104 130-223 (232)
57 PF12847 Methyltransf_18: Meth 97.9 2.3E-05 5.1E-10 47.2 4.4 48 2-49 59-111 (112)
58 PRK13255 thiopurine S-methyltr 97.9 0.0002 4.3E-09 48.9 9.3 82 2-103 104-190 (218)
59 COG1352 CheR Methylase of chem 97.9 3.4E-05 7.3E-10 54.2 5.4 48 2-49 191-241 (268)
60 KOG4300 Predicted methyltransf 97.9 0.0001 2.2E-09 50.0 7.4 90 12-107 147-236 (252)
61 PF05401 NodS: Nodulation prot 97.9 2E-05 4.3E-10 52.8 4.0 81 3-104 97-180 (201)
62 PF12147 Methyltransf_20: Puta 97.9 0.00021 4.5E-09 50.6 9.0 97 9-115 208-311 (311)
63 PRK01683 trans-aconitate 2-met 97.9 0.00014 2.9E-09 50.4 8.1 92 2-98 83-182 (258)
64 COG2230 Cfa Cyclopropane fatty 97.8 6.7E-05 1.5E-09 52.9 6.4 88 11-105 138-225 (283)
65 PRK07580 Mg-protoporphyrin IX 97.8 0.00017 3.7E-09 48.8 8.3 89 11-105 128-216 (230)
66 PRK10258 biotin biosynthesis p 97.8 0.00011 2.4E-09 50.6 7.1 88 2-98 92-182 (251)
67 PLN03075 nicotianamine synthas 97.7 5.3E-05 1.1E-09 53.8 4.5 45 2-47 184-231 (296)
68 PF03848 TehB: Tellurite resis 97.7 7.6E-05 1.7E-09 50.0 4.7 80 3-100 85-166 (192)
69 PF13649 Methyltransf_25: Meth 97.5 4.1E-05 8.9E-10 45.7 1.5 42 2-43 56-101 (101)
70 PF05148 Methyltransf_8: Hypot 97.5 0.00051 1.1E-08 46.6 6.8 84 2-115 111-197 (219)
71 PRK13256 thiopurine S-methyltr 97.5 0.00055 1.2E-08 47.0 6.8 52 2-53 110-167 (226)
72 COG2227 UbiG 2-polyprenyl-3-me 97.5 0.00028 6.1E-09 48.6 5.0 86 11-104 125-216 (243)
73 PTZ00146 fibrillarin; Provisio 97.4 0.0045 9.8E-08 44.1 10.2 79 11-113 203-284 (293)
74 TIGR03587 Pse_Me-ase pseudamin 97.4 0.00076 1.7E-08 45.5 6.1 51 2-54 95-147 (204)
75 PF05724 TPMT: Thiopurine S-me 97.4 0.00066 1.4E-08 46.4 5.8 82 2-103 104-190 (218)
76 KOG1270 Methyltransferases [Co 97.3 0.00026 5.6E-09 49.5 3.5 86 10-102 158-248 (282)
77 KOG3045 Predicted RNA methylas 97.3 0.0029 6.3E-08 44.4 8.2 83 3-115 218-303 (325)
78 PRK14968 putative methyltransf 97.2 0.012 2.6E-07 38.4 10.1 85 2-115 80-188 (188)
79 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.00052 1.1E-08 47.9 3.5 82 8-103 155-239 (256)
80 PF05219 DREV: DREV methyltran 97.1 0.0028 6.1E-08 44.3 6.8 83 11-105 152-242 (265)
81 COG4798 Predicted methyltransf 97.1 0.004 8.7E-08 42.0 7.2 79 11-104 123-206 (238)
82 PRK08287 cobalt-precorrin-6Y C 97.1 0.0034 7.3E-08 41.5 7.0 68 2-103 88-156 (187)
83 TIGR03534 RF_mod_PrmC protein- 97.1 0.0035 7.7E-08 42.9 7.2 46 29-104 197-242 (251)
84 PF07942 N2227: N2227-like pro 96.9 0.0084 1.8E-07 42.3 7.9 87 1-103 150-242 (270)
85 TIGR02081 metW methionine bios 96.7 0.0063 1.4E-07 40.4 5.7 88 11-104 76-168 (194)
86 PRK09489 rsmC 16S ribosomal RN 96.7 0.0053 1.2E-07 44.6 5.7 49 2-50 252-304 (342)
87 KOG2899 Predicted methyltransf 96.7 0.0033 7.1E-08 43.7 4.3 90 3-100 158-254 (288)
88 cd02440 AdoMet_MTases S-adenos 96.6 0.0068 1.5E-07 34.7 5.0 37 11-48 67-103 (107)
89 PF06859 Bin3: Bicoid-interact 96.5 0.001 2.3E-08 40.5 0.9 85 12-104 3-93 (110)
90 PRK09328 N5-glutamine S-adenos 96.4 0.056 1.2E-06 37.6 9.3 57 28-114 217-274 (275)
91 PRK00517 prmA ribosomal protei 96.4 0.049 1.1E-06 37.7 8.9 67 11-111 180-246 (250)
92 PRK15001 SAM-dependent 23S rib 96.3 0.013 2.8E-07 43.2 5.9 48 2-49 288-340 (378)
93 COG4627 Uncharacterized protei 96.2 0.0016 3.6E-08 42.3 0.5 38 11-48 48-85 (185)
94 COG4106 Tam Trans-aconitate me 96.1 0.016 3.5E-07 39.7 5.1 108 2-115 82-203 (257)
95 KOG2798 Putative trehalase [Ca 96.1 0.058 1.3E-06 39.0 7.8 89 1-104 244-338 (369)
96 KOG1975 mRNA cap methyltransfe 96.0 0.012 2.5E-07 42.7 4.2 39 9-47 195-235 (389)
97 PF05175 MTS: Methyltransferas 95.9 0.017 3.8E-07 37.6 4.3 48 2-49 88-140 (170)
98 PRK11188 rrmJ 23S rRNA methylt 95.8 0.04 8.6E-07 37.3 5.9 41 11-51 118-167 (209)
99 TIGR00138 gidB 16S rRNA methyl 95.6 0.06 1.3E-06 35.6 6.1 32 11-48 110-141 (181)
100 TIGR03439 methyl_EasF probable 95.4 0.04 8.7E-07 39.8 4.9 42 12-53 159-202 (319)
101 PRK14967 putative methyltransf 95.3 0.28 6.1E-06 33.3 8.8 25 28-52 138-162 (223)
102 TIGR02469 CbiT precorrin-6Y C5 95.2 0.03 6.4E-07 33.8 3.4 33 11-48 89-121 (124)
103 PF03291 Pox_MCEL: mRNA cappin 95.0 0.029 6.2E-07 40.7 3.2 38 12-49 147-186 (331)
104 PF11899 DUF3419: Protein of u 94.8 0.039 8.4E-07 40.8 3.6 43 12-54 297-339 (380)
105 PRK13944 protein-L-isoaspartat 94.5 0.075 1.6E-06 35.7 4.1 39 2-48 131-172 (205)
106 COG5459 Predicted rRNA methyla 94.4 0.042 9.1E-07 40.4 2.9 47 7-53 179-229 (484)
107 TIGR00027 mthyl_TIGR00027 meth 94.2 0.37 7.9E-06 33.8 7.3 84 12-101 160-248 (260)
108 PRK13942 protein-L-isoaspartat 94.2 0.1 2.2E-06 35.3 4.3 39 2-48 134-175 (212)
109 KOG1331 Predicted methyltransf 94.0 0.062 1.3E-06 38.2 3.0 48 3-50 93-144 (293)
110 PRK00121 trmB tRNA (guanine-N( 93.8 0.095 2.1E-06 35.2 3.6 39 11-49 112-156 (202)
111 PF08123 DOT1: Histone methyla 93.6 0.1 2.2E-06 35.4 3.4 52 1-55 107-164 (205)
112 PRK11088 rrmA 23S rRNA methylt 93.1 0.11 2.4E-06 36.4 3.2 39 2-49 140-181 (272)
113 TIGR01177 conserved hypothetic 93.0 0.32 7E-06 35.1 5.4 47 2-48 237-293 (329)
114 COG3315 O-Methyltransferase in 92.9 0.68 1.5E-05 33.2 6.9 88 12-101 172-262 (297)
115 PF09243 Rsm22: Mitochondrial 92.9 0.22 4.8E-06 35.1 4.3 44 10-55 102-145 (274)
116 PRK00312 pcm protein-L-isoaspa 92.6 0.27 5.9E-06 33.0 4.4 40 2-49 133-175 (212)
117 PRK00107 gidB 16S rRNA methylt 92.4 0.26 5.6E-06 32.9 4.0 33 11-49 113-145 (187)
118 PHA03411 putative methyltransf 92.3 0.93 2E-05 32.3 6.9 74 2-98 116-209 (279)
119 PRK11805 N5-glutamine S-adenos 92.2 0.34 7.5E-06 34.7 4.7 20 28-47 242-261 (307)
120 TIGR03533 L3_gln_methyl protei 92.0 0.4 8.8E-06 33.9 4.8 20 28-47 230-249 (284)
121 cd01842 SGNH_hydrolase_like_5 91.9 0.37 8.1E-06 32.0 4.2 39 12-50 52-100 (183)
122 COG2242 CobL Precorrin-6B meth 91.7 0.51 1.1E-05 31.6 4.7 38 7-50 99-136 (187)
123 TIGR00438 rrmJ cell division p 91.6 0.26 5.6E-06 32.5 3.3 38 11-48 99-145 (188)
124 COG2813 RsmC 16S RNA G1207 met 91.5 0.61 1.3E-05 33.5 5.2 49 2-50 215-267 (300)
125 TIGR00536 hemK_fam HemK family 91.1 0.78 1.7E-05 32.4 5.5 46 2-47 172-242 (284)
126 KOG3987 Uncharacterized conser 90.8 0.33 7.1E-06 33.4 3.2 82 12-104 171-261 (288)
127 PRK00377 cbiT cobalt-precorrin 90.6 0.5 1.1E-05 31.4 4.0 32 11-47 112-143 (198)
128 COG2519 GCD14 tRNA(1-methylade 90.6 0.45 9.7E-06 33.4 3.8 46 2-54 153-200 (256)
129 TIGR00080 pimt protein-L-isoas 90.4 0.66 1.4E-05 31.3 4.4 39 2-48 135-176 (215)
130 TIGR00563 rsmB ribosomal RNA s 90.2 0.73 1.6E-05 34.5 4.9 45 11-55 310-374 (426)
131 TIGR00417 speE spermidine synt 90.1 0.58 1.3E-05 32.8 4.1 38 11-48 146-185 (270)
132 PRK01544 bifunctional N5-gluta 89.3 6.5 0.00014 30.3 9.5 20 28-47 248-267 (506)
133 TIGR00406 prmA ribosomal prote 89.2 0.44 9.5E-06 33.8 3.0 35 11-50 226-260 (288)
134 KOG1269 SAM-dependent methyltr 88.4 0.43 9.2E-06 35.2 2.5 93 2-100 167-264 (364)
135 KOG3010 Methyltransferase [Gen 88.4 0.47 1E-05 33.2 2.5 38 11-51 101-139 (261)
136 PF07109 Mg-por_mtran_C: Magne 88.3 2.8 6E-05 25.1 5.5 84 19-114 4-96 (97)
137 PRK00811 spermidine synthase; 87.4 1.6 3.4E-05 30.9 4.9 38 11-48 151-190 (283)
138 PF07021 MetW: Methionine bios 87.2 7.1 0.00015 26.3 7.6 87 8-105 71-169 (193)
139 COG4976 Predicted methyltransf 87.1 2.6 5.5E-05 29.6 5.5 78 10-104 188-266 (287)
140 PRK14904 16S rRNA methyltransf 87.1 2.1 4.6E-05 32.3 5.6 26 29-54 357-382 (445)
141 COG2521 Predicted archaeal met 86.6 5.1 0.00011 28.2 6.7 55 28-104 224-278 (287)
142 PF10017 Methyltransf_33: Hist 86.6 1.9 4E-05 26.9 4.3 33 78-110 92-125 (127)
143 COG0500 SmtA SAM-dependent met 85.9 2.1 4.5E-05 25.5 4.3 41 11-54 120-160 (257)
144 COG4123 Predicted O-methyltran 85.8 4.9 0.00011 28.2 6.5 58 28-115 149-212 (248)
145 PRK07402 precorrin-6B methylas 85.6 1.3 2.8E-05 29.4 3.5 24 27-50 120-143 (196)
146 PF13659 Methyltransf_26: Meth 85.5 0.84 1.8E-05 27.2 2.4 38 11-48 71-114 (117)
147 TIGR00091 tRNA (guanine-N(7)-) 85.2 1.2 2.6E-05 29.6 3.1 21 29-49 112-132 (194)
148 PF03492 Methyltransf_7: SAM d 84.3 3.9 8.5E-05 29.8 5.7 97 1-101 95-251 (334)
149 PF03269 DUF268: Caenorhabditi 84.1 6.7 0.00015 25.9 6.1 25 29-53 91-115 (177)
150 PRK14121 tRNA (guanine-N(7)-)- 83.9 1.9 4.2E-05 32.2 4.0 42 7-49 187-235 (390)
151 COG0275 Predicted S-adenosylme 83.8 1.3 2.8E-05 32.0 2.9 30 26-55 221-250 (314)
152 TIGR00006 S-adenosyl-methyltra 83.8 1.8 4E-05 31.2 3.7 29 27-55 218-246 (305)
153 COG4301 Uncharacterized conser 83.7 3.1 6.8E-05 29.5 4.7 42 12-53 156-198 (321)
154 COG2518 Pcm Protein-L-isoaspar 81.5 4 8.6E-05 27.9 4.5 41 2-50 127-170 (209)
155 PRK04457 spermidine synthase; 81.3 2 4.3E-05 30.1 3.1 37 11-48 137-176 (262)
156 PRK00050 16S rRNA m(4)C1402 me 81.0 2.7 5.8E-05 30.2 3.7 30 27-56 214-243 (296)
157 PF03059 NAS: Nicotianamine sy 80.4 3.1 6.8E-05 29.6 3.8 36 11-47 193-228 (276)
158 PLN02366 spermidine synthase 80.3 4.5 9.8E-05 29.2 4.7 38 11-48 166-205 (308)
159 PRK01581 speE spermidine synth 79.9 4.6 0.0001 30.0 4.7 38 11-48 227-267 (374)
160 PF03141 Methyltransf_29: Puta 79.8 0.72 1.6E-05 35.4 0.5 46 7-53 176-223 (506)
161 PRK14966 unknown domain/N5-glu 79.6 16 0.00034 27.7 7.4 57 28-114 360-417 (423)
162 PF10294 Methyltransf_16: Puta 79.5 4 8.7E-05 26.7 3.9 40 11-52 120-159 (173)
163 PF03141 Methyltransf_29: Puta 79.3 2.1 4.6E-05 32.9 2.9 43 8-50 424-468 (506)
164 COG3963 Phospholipid N-methylt 79.0 8.8 0.00019 25.6 5.3 41 11-51 118-158 (194)
165 PRK14901 16S rRNA methyltransf 78.9 2.5 5.3E-05 31.8 3.1 27 28-54 363-389 (434)
166 PLN02781 Probable caffeoyl-CoA 78.5 6.5 0.00014 27.0 4.9 37 11-52 145-181 (234)
167 PRK10901 16S rRNA methyltransf 76.4 4.4 9.5E-05 30.4 3.8 27 28-54 351-377 (427)
168 PRK03612 spermidine synthase; 75.5 6.3 0.00014 30.5 4.5 38 11-48 374-414 (521)
169 PF01795 Methyltransf_5: MraW 75.0 2.1 4.5E-05 31.0 1.7 30 26-55 218-247 (310)
170 TIGR00446 nop2p NOL1/NOP2/sun 74.8 5.4 0.00012 27.9 3.8 26 29-54 179-204 (264)
171 PLN02668 indole-3-acetate carb 72.6 13 0.00028 27.8 5.4 24 1-24 150-176 (386)
172 PRK13943 protein-L-isoaspartat 71.6 5 0.00011 29.1 3.0 31 11-49 150-180 (322)
173 COG2264 PrmA Ribosomal protein 71.2 27 0.00059 25.2 6.6 60 11-104 230-289 (300)
174 COG4353 Uncharacterized conser 69.5 19 0.00042 23.7 5.0 62 26-104 70-131 (192)
175 PF01135 PCMT: Protein-L-isoas 69.5 3 6.6E-05 28.3 1.5 39 2-48 130-171 (209)
176 TIGR03439 methyl_EasF probable 69.3 10 0.00022 27.6 4.2 33 78-110 284-317 (319)
177 PRK14902 16S rRNA methyltransf 68.7 7.7 0.00017 29.2 3.6 24 29-52 359-382 (444)
178 PF08002 DUF1697: Protein of u 68.6 15 0.00033 23.1 4.5 34 78-112 14-48 (137)
179 KOG1661 Protein-L-isoaspartate 67.3 6.3 0.00014 27.2 2.6 28 12-47 164-191 (237)
180 PRK11933 yebU rRNA (cytosine-C 67.2 5.8 0.00013 30.4 2.7 23 29-51 222-244 (470)
181 PRK14903 16S rRNA methyltransf 66.8 9.3 0.0002 28.8 3.7 26 28-53 345-370 (431)
182 PRK11524 putative methyltransf 66.3 8.4 0.00018 27.2 3.3 20 29-48 60-79 (284)
183 PF05185 PRMT5: PRMT5 arginine 66.3 2.9 6.3E-05 31.8 0.9 44 2-46 248-294 (448)
184 PF01555 N6_N4_Mtase: DNA meth 64.8 4.8 0.0001 26.6 1.7 20 28-47 35-54 (231)
185 KOG2940 Predicted methyltransf 64.5 2.3 5E-05 29.9 0.1 82 11-101 138-225 (325)
186 PF07927 YcfA: YcfA-like prote 64.4 7.1 0.00015 20.3 2.0 17 85-101 2-18 (56)
187 KOG2198 tRNA cytosine-5-methyl 64.3 7.1 0.00015 29.0 2.6 28 28-55 275-302 (375)
188 PF06325 PrmA: Ribosomal prote 63.8 19 0.00042 25.8 4.7 61 11-106 226-286 (295)
189 PF06962 rRNA_methylase: Putat 62.9 5.8 0.00013 25.4 1.7 24 26-49 69-92 (140)
190 TIGR03704 PrmC_rel_meth putati 62.9 13 0.00029 25.8 3.7 20 28-47 195-214 (251)
191 KOG2539 Mitochondrial/chloropl 62.3 14 0.00031 28.4 3.9 42 12-53 276-319 (491)
192 PF08468 MTS_N: Methyltransfer 61.9 16 0.00035 23.6 3.7 31 22-52 76-108 (155)
193 PF13578 Methyltransf_24: Meth 61.9 6.5 0.00014 23.1 1.8 24 26-49 82-105 (106)
194 PF05772 NinB: NinB protein; 61.5 13 0.00028 23.3 3.1 34 69-104 49-87 (127)
195 PRK13699 putative methylase; P 61.4 12 0.00025 25.7 3.2 20 28-47 51-70 (227)
196 KOG1271 Methyltransferases [Ge 61.3 17 0.00036 24.8 3.7 24 82-105 184-207 (227)
197 PF08845 SymE_toxin: Toxin Sym 60.4 7.3 0.00016 20.9 1.6 12 89-100 31-42 (57)
198 cd01093 CRIB_PAK_like PAK (p21 59.9 4.5 9.8E-05 20.6 0.7 19 82-100 26-44 (46)
199 TIGR01033 DNA-binding regulato 59.7 18 0.0004 25.2 3.9 14 41-54 92-105 (238)
200 COG0503 Apt Adenine/guanine ph 59.7 34 0.00074 22.6 5.0 21 83-103 131-151 (179)
201 PRK05298 excinuclease ABC subu 59.4 48 0.001 26.5 6.6 32 78-109 163-194 (652)
202 PF05430 Methyltransf_30: S-ad 59.1 21 0.00046 22.2 3.7 30 85-114 93-122 (124)
203 PF14740 DUF4471: Domain of un 58.4 9.8 0.00021 27.3 2.4 59 12-100 224-286 (289)
204 PRK08558 adenine phosphoribosy 58.3 24 0.00051 24.5 4.2 66 37-103 171-236 (238)
205 PF06557 DUF1122: Protein of u 57.3 12 0.00026 24.6 2.5 63 25-104 62-124 (170)
206 PLN02476 O-methyltransferase 57.2 69 0.0015 22.9 7.7 37 12-53 196-232 (278)
207 KOG3924 Putative protein methy 56.4 24 0.00052 26.7 4.1 51 2-55 258-314 (419)
208 PF11312 DUF3115: Protein of u 55.2 20 0.00044 26.1 3.5 39 12-50 202-243 (315)
209 PRK10858 nitrogen regulatory p 54.9 29 0.00062 21.2 3.8 28 23-50 65-96 (112)
210 PF06968 BATS: Biotin and Thia 53.5 34 0.00074 19.9 3.9 77 20-97 16-92 (93)
211 TIGR00631 uvrb excinuclease AB 53.3 74 0.0016 25.6 6.7 32 78-109 160-191 (655)
212 COG0217 Uncharacterized conser 53.0 19 0.00042 25.1 3.1 22 81-102 146-167 (241)
213 PRK09489 rsmC 16S ribosomal RN 53.0 26 0.00057 25.6 3.9 38 11-53 77-116 (342)
214 COG0144 Sun tRNA and rRNA cyto 52.8 19 0.00042 26.4 3.3 27 28-54 267-293 (355)
215 PRK15001 SAM-dependent 23S rib 52.7 60 0.0013 24.3 5.8 42 7-53 102-146 (378)
216 PLN02672 methionine S-methyltr 52.6 47 0.001 28.5 5.6 20 28-47 257-276 (1082)
217 PF13592 HTH_33: Winged helix- 51.4 14 0.0003 19.7 1.8 27 78-104 18-44 (60)
218 PF03698 UPF0180: Uncharacteri 50.9 16 0.00035 21.0 2.1 25 79-103 5-29 (80)
219 PRK02220 4-oxalocrotonate taut 50.8 36 0.00078 17.7 3.9 37 18-54 7-49 (61)
220 PRK06852 aldolase; Validated 50.7 16 0.00035 26.4 2.5 29 21-49 9-37 (304)
221 PRK00110 hypothetical protein; 50.0 36 0.00079 23.8 4.1 34 22-55 60-106 (245)
222 PF02390 Methyltransf_4: Putat 49.8 9.8 0.00021 25.4 1.2 21 28-48 112-132 (195)
223 PF02636 Methyltransf_28: Puta 48.8 30 0.00065 23.9 3.6 27 27-53 172-198 (252)
224 COG4004 Uncharacterized protei 48.7 56 0.0012 19.4 4.5 38 78-115 8-49 (96)
225 PF13319 DUF4090: Protein of u 48.5 18 0.00039 20.7 2.0 26 77-102 54-79 (84)
226 COG5443 FlbT Flagellar biosynt 48.3 11 0.00023 23.9 1.1 54 37-92 7-83 (148)
227 PF01316 Arg_repressor: Argini 48.1 19 0.00041 20.1 2.0 22 78-99 16-37 (70)
228 PRK00536 speE spermidine synth 46.8 24 0.00051 25.0 2.8 31 11-48 140-170 (262)
229 PRK12378 hypothetical protein; 46.8 17 0.00037 25.3 2.1 34 22-55 58-103 (235)
230 TIGR03707 PPK2_P_aer polyphosp 46.7 32 0.0007 23.8 3.4 70 26-102 72-141 (230)
231 smart00874 B5 tRNA synthetase 46.5 28 0.0006 18.9 2.6 21 79-99 16-36 (71)
232 PRK04280 arginine repressor; P 46.3 21 0.00046 22.9 2.3 23 78-100 15-37 (148)
233 KOG2352 Predicted spermine/spe 46.0 53 0.0012 25.5 4.7 53 3-55 104-169 (482)
234 PRK10665 nitrogen regulatory p 46.0 48 0.001 20.2 3.8 28 23-50 65-96 (112)
235 KOG3201 Uncharacterized conser 45.8 40 0.00088 22.5 3.5 35 11-47 104-138 (201)
236 COG5379 BtaA S-adenosylmethion 45.6 54 0.0012 24.1 4.4 38 11-48 328-365 (414)
237 PF00543 P-II: Nitrogen regula 45.3 25 0.00053 20.8 2.4 28 23-50 62-93 (102)
238 PF01206 TusA: Sulfurtransfera 45.3 34 0.00074 18.4 2.8 27 84-110 40-66 (70)
239 PF10006 DUF2249: Uncharacteri 44.2 52 0.0011 17.8 3.5 26 24-49 8-33 (69)
240 PLN02823 spermine synthase 44.0 30 0.00064 25.4 3.0 20 29-48 199-219 (336)
241 PF01564 Spermine_synth: Sperm 43.6 14 0.0003 25.7 1.2 22 28-49 170-191 (246)
242 COG0421 SpeE Spermidine syntha 43.4 32 0.0007 24.6 3.1 21 28-48 169-189 (282)
243 cd03421 SirA_like_N SirA_like_ 43.3 53 0.0012 17.6 4.4 29 84-114 38-66 (67)
244 COG0220 Predicted S-adenosylme 43.2 34 0.00074 23.6 3.1 21 28-48 143-163 (227)
245 COG1438 ArgR Arginine represso 43.2 23 0.0005 22.9 2.1 22 78-99 17-38 (150)
246 COG4122 Predicted O-methyltran 43.0 40 0.00087 23.2 3.4 37 12-54 134-170 (219)
247 PRK13587 1-(5-phosphoribosyl)- 42.5 53 0.0011 22.6 4.0 54 43-100 163-219 (234)
248 TIGR03709 PPK2_rel_1 polyphosp 42.4 43 0.00093 23.8 3.5 68 28-102 99-166 (264)
249 COG2813 RsmC 16S RNA G1207 met 42.4 48 0.001 24.0 3.8 37 11-52 38-76 (300)
250 PRK06132 hypothetical protein; 42.1 29 0.00062 25.8 2.7 24 29-52 321-344 (359)
251 PF05763 DUF835: Protein of un 42.0 46 0.001 21.0 3.4 39 12-50 42-83 (136)
252 PF08704 GCD14: tRNA methyltra 41.8 4.3 9.3E-05 28.4 -1.5 37 11-54 114-151 (247)
253 PF01870 Hjc: Archaeal hollida 41.2 22 0.00048 20.8 1.7 18 84-101 3-20 (88)
254 PF01436 NHL: NHL repeat; Int 41.2 17 0.00036 16.1 0.9 11 40-50 10-20 (28)
255 COG4822 CbiK Cobalamin biosynt 41.0 35 0.00075 23.8 2.8 18 82-99 216-233 (265)
256 PRK13605 endoribonuclease SymE 40.9 14 0.0003 22.7 0.8 13 88-100 44-56 (113)
257 COG3053 CitC Citrate lyase syn 40.8 31 0.00066 25.2 2.6 33 78-112 92-124 (352)
258 PF15585 Imm46: Immunity prote 40.6 72 0.0016 20.2 3.9 39 11-50 50-93 (129)
259 COG0541 Ffh Signal recognition 40.4 75 0.0016 24.4 4.7 44 12-55 184-227 (451)
260 COG2326 Uncharacterized conser 40.4 83 0.0018 22.4 4.6 64 28-101 117-183 (270)
261 PF03484 B5: tRNA synthetase B 40.3 33 0.00071 18.8 2.2 22 79-100 16-37 (70)
262 PF11305 DUF3107: Protein of u 40.2 35 0.00075 19.4 2.3 25 25-49 19-44 (74)
263 cd03238 ABC_UvrA The excision 40.1 1E+02 0.0022 20.2 4.9 24 12-35 109-132 (176)
264 PRK09219 xanthine phosphoribos 39.7 48 0.001 22.1 3.3 67 37-104 112-178 (189)
265 PF03574 Peptidase_S48: Peptid 39.6 27 0.0006 21.9 2.0 28 18-45 12-39 (149)
266 PF12419 DUF3670: SNF2 Helicas 39.5 98 0.0021 19.5 4.7 75 23-100 11-101 (141)
267 PRK15450 signal transduction p 39.4 23 0.0005 20.4 1.5 18 78-95 68-85 (85)
268 PRK03094 hypothetical protein; 39.4 35 0.00076 19.7 2.3 25 79-103 5-29 (80)
269 PF01189 Nol1_Nop2_Fmu: NOL1/N 39.4 13 0.00028 26.4 0.6 26 28-53 194-223 (283)
270 TIGR02764 spore_ybaN_pdaB poly 39.3 59 0.0013 21.2 3.7 31 19-49 129-159 (191)
271 PF07862 Nif11: Nitrogen fixat 39.2 38 0.00083 17.0 2.3 17 82-98 27-43 (49)
272 KOG0964 Structural maintenance 38.9 38 0.00083 28.7 3.1 77 15-100 48-134 (1200)
273 PF00107 ADH_zinc_N: Zinc-bind 38.4 19 0.00042 21.6 1.2 24 29-52 69-92 (130)
274 COG3897 Predicted methyltransf 38.3 73 0.0016 21.9 3.9 38 10-50 142-180 (218)
275 cd03413 CbiK_C Anaerobic cobal 38.1 35 0.00076 20.4 2.3 17 84-100 81-97 (103)
276 PF12646 DUF3783: Domain of un 37.8 42 0.00091 17.8 2.3 20 19-38 5-24 (58)
277 COG1902 NemA NADH:flavin oxido 37.3 1.7E+02 0.0038 21.7 6.7 87 18-105 72-172 (363)
278 COG2240 PdxK Pyridoxal/pyridox 36.5 76 0.0016 22.8 4.0 45 10-56 73-117 (281)
279 KOG2918 Carboxymethyl transfer 36.1 1.5E+02 0.0032 21.9 5.4 86 13-104 191-278 (335)
280 PF15603 Imm45: Immunity prote 35.8 77 0.0017 18.3 3.3 39 11-49 35-82 (82)
281 PRK05066 arginine repressor; P 35.7 30 0.00066 22.5 1.8 20 78-97 20-39 (156)
282 KOG3451 Uncharacterized conser 35.4 39 0.00085 18.8 1.9 25 25-49 13-37 (71)
283 TIGR01744 XPRTase xanthine pho 35.2 66 0.0014 21.5 3.5 67 37-104 112-178 (191)
284 COG1724 Predicted RNA binding 35.2 61 0.0013 18.0 2.7 20 82-101 7-26 (66)
285 PF14258 DUF4350: Domain of un 35.0 77 0.0017 17.0 4.2 10 39-48 60-69 (70)
286 PRK09213 pur operon repressor; 34.8 1.3E+02 0.0028 21.5 5.0 20 37-56 191-210 (271)
287 PF09587 PGA_cap: Bacterial ca 34.8 1.4E+02 0.0031 20.4 5.2 45 11-55 6-51 (250)
288 PF09382 RQC: RQC domain; Int 34.8 21 0.00045 21.0 0.9 61 27-93 5-65 (106)
289 PF10354 DUF2431: Domain of un 34.7 61 0.0013 21.1 3.2 50 29-105 105-154 (166)
290 cd04911 ACT_AKiii-YclM-BS_1 AC 34.4 88 0.0019 17.7 3.4 34 8-43 35-71 (76)
291 PF00786 PBD: P21-Rho-binding 34.4 37 0.00079 18.1 1.8 19 82-100 25-43 (59)
292 COG1187 RsuA 16S rRNA uridine- 34.2 48 0.0011 23.3 2.7 25 78-105 190-214 (248)
293 cd00291 SirA_YedF_YeeD SirA, Y 34.0 78 0.0017 16.8 4.7 30 84-114 39-68 (69)
294 COG0347 GlnK Nitrogen regulato 34.0 87 0.0019 19.3 3.5 28 23-50 65-96 (112)
295 PF00724 Oxidored_FMN: NADH:fl 33.8 1.5E+02 0.0032 21.6 5.4 83 22-105 73-172 (341)
296 cd02931 ER_like_FMN Enoate red 33.7 2E+02 0.0043 21.4 6.6 29 23-51 76-104 (382)
297 PRK09472 ftsA cell division pr 33.4 1.7E+02 0.0036 22.0 5.7 82 21-104 102-188 (420)
298 PF09822 ABC_transp_aux: ABC-t 33.3 1.4E+02 0.0031 20.7 5.1 38 7-48 193-231 (271)
299 COG1245 Predicted ATPase, RNas 33.1 1.3E+02 0.0029 23.6 5.0 41 10-50 231-271 (591)
300 PF13399 LytR_C: LytR cell env 32.8 47 0.001 18.9 2.2 25 78-102 12-36 (90)
301 PRK05225 ketol-acid reductoiso 32.7 87 0.0019 24.4 4.0 36 9-49 96-131 (487)
302 PF10087 DUF2325: Uncharacteri 32.5 49 0.0011 19.2 2.2 24 78-101 6-29 (97)
303 KOG1500 Protein arginine N-met 32.4 82 0.0018 23.7 3.7 40 7-46 239-279 (517)
304 TIGR01743 purR_Bsub pur operon 32.1 1.3E+02 0.0028 21.5 4.6 20 37-56 189-208 (268)
305 cd03319 L-Ala-DL-Glu_epimerase 32.1 1.8E+02 0.0038 20.7 5.5 27 78-104 234-260 (316)
306 PF06897 DUF1269: Protein of u 32.1 98 0.0021 18.6 3.5 21 30-50 43-63 (102)
307 cd04882 ACT_Bt0572_2 C-termina 30.9 50 0.0011 17.0 2.0 15 84-98 50-64 (65)
308 CHL00123 rps6 ribosomal protei 30.8 90 0.002 18.4 3.2 29 22-50 17-46 (97)
309 COG3019 Predicted metal-bindin 30.8 57 0.0012 21.0 2.4 18 85-102 40-57 (149)
310 COG2103 Predicted sugar phosph 30.7 63 0.0014 23.2 2.8 23 28-50 46-68 (298)
311 PF14117 DUF4287: Domain of un 30.4 48 0.001 18.0 1.8 15 81-95 14-28 (61)
312 PF10281 Ish1: Putative stress 30.0 66 0.0014 15.3 2.1 18 82-99 4-21 (38)
313 cd02554 PseudoU_synth_RluF Pse 30.0 70 0.0015 20.8 2.8 25 78-105 116-140 (164)
314 PF06283 ThuA: Trehalose utili 29.9 1.5E+02 0.0032 19.8 4.5 36 10-49 52-88 (217)
315 PLN02589 caffeoyl-CoA O-methyl 29.8 86 0.0019 21.9 3.4 36 11-52 157-192 (247)
316 PF12780 AAA_8: P-loop contain 29.6 1.1E+02 0.0024 21.6 4.0 70 28-101 16-91 (268)
317 PRK01033 imidazole glycerol ph 29.6 1E+02 0.0022 21.5 3.8 24 77-100 201-224 (258)
318 COG4421 Capsular polysaccharid 29.5 49 0.0011 24.5 2.2 21 83-103 242-262 (368)
319 cd08283 FDH_like_1 Glutathione 29.5 69 0.0015 23.4 3.1 22 29-50 286-307 (386)
320 COG4076 Predicted RNA methylas 29.3 23 0.00051 24.2 0.5 52 2-53 87-139 (252)
321 PF14814 UB2H: Bifunctional tr 29.0 46 0.001 19.0 1.7 23 78-100 3-25 (85)
322 PF09601 DUF2459: Protein of u 29.0 1.7E+02 0.0038 19.2 5.3 69 22-103 97-168 (173)
323 cd04276 ZnMc_MMP_like_2 Zinc-d 28.6 75 0.0016 21.4 2.9 19 83-101 29-47 (197)
324 COG3640 CooC CO dehydrogenase 28.6 1.5E+02 0.0033 21.0 4.3 71 28-101 118-190 (255)
325 PF09827 CRISPR_Cas2: CRISPR a 28.3 1.1E+02 0.0024 16.8 4.4 30 22-51 38-68 (78)
326 cd03422 YedF YedF is a bacteri 28.1 1.1E+02 0.0024 16.6 3.7 22 84-105 39-60 (69)
327 TIGR03798 ocin_TIGR03798 bacte 28.0 71 0.0015 17.1 2.3 17 82-98 25-41 (64)
328 COG1060 ThiH Thiamine biosynth 27.9 66 0.0014 24.0 2.7 25 80-104 335-359 (370)
329 COG1041 Predicted DNA modifica 27.6 97 0.0021 23.0 3.5 26 25-50 286-311 (347)
330 PRK02289 4-oxalocrotonate taut 27.5 1E+02 0.0022 16.1 4.5 36 18-53 7-48 (60)
331 PF08671 SinI: Anti-repressor 27.5 43 0.00093 15.5 1.1 15 85-99 3-20 (30)
332 PF13580 SIS_2: SIS domain; PD 27.3 63 0.0014 20.1 2.2 26 25-50 18-43 (138)
333 PF03793 PASTA: PASTA domain; 27.3 1E+02 0.0022 16.0 2.9 21 81-101 8-28 (63)
334 PRK13810 orotate phosphoribosy 27.3 1.3E+02 0.0027 20.1 3.8 60 37-103 117-181 (187)
335 TIGR03708 poly_P_AMP_trns poly 26.8 88 0.0019 24.4 3.3 69 27-102 82-150 (493)
336 COG3910 Predicted ATPase [Gene 26.6 1.2E+02 0.0026 20.9 3.5 28 22-49 158-185 (233)
337 PF02153 PDH: Prephenate dehyd 26.5 2.2E+02 0.0049 19.7 5.5 17 85-101 140-156 (258)
338 PF00919 UPF0004: Uncharacteri 26.3 1.5E+02 0.0032 17.5 4.6 46 10-55 36-82 (98)
339 PF11590 DNAPolymera_Pol: DNA 26.3 56 0.0012 16.2 1.4 14 86-99 2-15 (41)
340 PRK09902 hypothetical protein; 26.2 20 0.00044 24.6 -0.2 38 18-55 120-164 (216)
341 cd05007 SIS_Etherase N-acetylm 26.2 83 0.0018 22.0 2.8 23 27-49 34-56 (257)
342 cd04909 ACT_PDH-BS C-terminal 25.9 69 0.0015 16.9 2.0 15 84-98 55-69 (69)
343 PF13137 DUF3983: Protein of u 25.8 33 0.00071 16.3 0.5 15 81-95 19-33 (34)
344 PF08373 RAP: RAP domain; Int 25.8 67 0.0015 16.5 1.9 14 88-101 24-37 (58)
345 PF01269 Fibrillarin: Fibrilla 25.7 44 0.00095 23.2 1.4 77 11-113 144-225 (229)
346 PF00017 SH2: SH2 domain; Int 25.7 84 0.0018 17.0 2.4 28 21-52 4-31 (77)
347 KOG1379 Serine/threonine prote 25.7 93 0.002 22.9 3.0 36 3-38 237-275 (330)
348 PRK05473 hypothetical protein; 25.7 58 0.0013 19.0 1.6 23 22-44 14-36 (86)
349 COG0107 HisF Imidazoleglycerol 25.4 1.9E+02 0.0041 20.5 4.4 67 29-101 33-102 (256)
350 COG1092 Predicted SAM-dependen 25.2 96 0.0021 23.4 3.1 23 28-50 315-337 (393)
351 cd08258 Zn_ADH4 Alcohol dehydr 25.1 2.3E+02 0.0049 19.8 5.0 23 30-52 245-267 (306)
352 cd03067 PDI_b_PDIR_N PDIb fami 24.9 1.7E+02 0.0038 17.9 3.8 28 26-53 34-61 (112)
353 PF13167 GTP-bdg_N: GTP-bindin 24.9 1E+02 0.0022 18.3 2.7 21 82-102 8-28 (95)
354 PF05924 SAMP: SAMP Motif; In 24.8 71 0.0015 13.3 1.6 12 30-41 4-15 (20)
355 PF10726 DUF2518: Protein of f 24.8 1E+02 0.0022 19.9 2.8 33 12-45 81-113 (145)
356 TIGR03473 HpnK hopanoid biosyn 24.7 1.9E+02 0.0042 20.5 4.5 62 30-100 215-277 (283)
357 PF15072 DUF4539: Domain of un 24.7 73 0.0016 18.5 2.0 23 29-51 38-60 (86)
358 PF00403 HMA: Heavy-metal-asso 24.6 74 0.0016 16.4 1.9 16 82-97 47-62 (62)
359 cd03423 SirA SirA (also known 24.6 1.3E+02 0.0028 16.2 4.6 23 84-106 39-61 (69)
360 TIGR00013 taut 4-oxalocrotonat 24.6 1.2E+02 0.0025 15.8 4.1 35 21-55 10-50 (63)
361 COG3581 Uncharacterized protei 24.5 81 0.0018 23.9 2.6 28 78-105 81-111 (420)
362 PRK13510 sulfur transfer compl 24.3 76 0.0016 18.7 2.1 30 20-49 2-31 (95)
363 PHA00457 inhibitor of host bac 24.2 1E+02 0.0022 16.8 2.3 19 86-104 41-60 (63)
364 cd03420 SirA_RHOD_Pry_redox Si 24.1 1.3E+02 0.0029 16.2 6.7 22 84-105 39-60 (69)
365 PF02913 FAD-oxidase_C: FAD li 24.1 61 0.0013 21.5 1.8 21 25-45 223-243 (248)
366 PF03514 GRAS: GRAS domain fam 24.0 52 0.0011 24.4 1.6 20 83-102 311-330 (374)
367 TIGR03675 arCOG00543 arCOG0054 23.9 2.2E+02 0.0048 22.9 5.1 41 10-50 364-410 (630)
368 KOG2698 GTP cyclohydrolase I [ 23.8 1.3E+02 0.0027 20.9 3.2 21 30-50 184-204 (247)
369 cd04723 HisA_HisF Phosphoribos 23.8 2.1E+02 0.0045 19.6 4.4 67 28-101 148-217 (233)
370 TIGR02873 spore_ylxY probable 23.7 1.2E+02 0.0027 21.4 3.3 30 20-49 209-238 (268)
371 PHA01782 hypothetical protein 23.7 25 0.00054 23.1 -0.1 26 19-44 43-68 (177)
372 PF07485 DUF1529: Domain of Un 23.6 34 0.00074 21.3 0.5 22 19-40 100-121 (123)
373 PF07530 PRE_C2HC: Associated 23.6 1.2E+02 0.0027 16.6 2.7 20 85-104 2-21 (68)
374 KOG1541 Predicted protein carb 23.5 2.7E+02 0.0058 19.8 4.8 26 24-49 135-160 (270)
375 PF13344 Hydrolase_6: Haloacid 23.5 78 0.0017 18.6 2.0 21 78-98 38-58 (101)
376 PRK11018 hypothetical protein; 23.4 1.5E+02 0.0032 16.6 4.6 30 84-114 48-77 (78)
377 PRK15128 23S rRNA m(5)C1962 me 23.4 1.1E+02 0.0023 23.1 3.1 21 29-49 319-339 (396)
378 PF07647 SAM_2: SAM domain (St 23.3 91 0.002 16.3 2.1 15 83-97 5-19 (66)
379 PRK12560 adenine phosphoribosy 23.2 1.6E+02 0.0034 19.5 3.7 66 38-104 110-176 (187)
380 PF13405 EF-hand_6: EF-hand do 23.2 72 0.0016 14.1 1.5 18 78-95 13-31 (31)
381 TIGR00959 ffh signal recogniti 23.1 2.2E+02 0.0047 21.8 4.7 41 12-52 184-224 (428)
382 COG0566 SpoU rRNA methylases [ 23.1 1.2E+02 0.0026 21.3 3.2 80 18-104 112-192 (260)
383 COG4273 Uncharacterized conser 22.9 98 0.0021 19.6 2.4 23 21-43 109-131 (135)
384 PF01728 FtsJ: FtsJ-like methy 22.9 1.1E+02 0.0023 19.7 2.8 22 28-49 118-139 (181)
385 PF10672 Methyltrans_SAM: S-ad 22.9 48 0.001 23.7 1.2 24 27-50 216-239 (286)
386 cd04908 ACT_Bt0572_1 N-termina 22.7 89 0.0019 16.4 2.0 15 84-98 50-64 (66)
387 PF05711 TylF: Macrocin-O-meth 22.6 38 0.00083 23.8 0.6 25 28-52 191-215 (248)
388 PF02794 HlyC: RTX toxin acylt 22.6 1.4E+02 0.0031 18.7 3.2 41 13-55 47-91 (133)
389 COG1795 Formaldehyde-activatin 22.4 65 0.0014 21.0 1.6 29 12-40 107-135 (170)
390 COG2185 Sbm Methylmalonyl-CoA 22.2 88 0.0019 20.1 2.2 23 78-100 23-45 (143)
391 TIGR01634 tail_P2_I phage tail 22.2 2.1E+02 0.0045 18.2 3.9 67 22-94 55-135 (139)
392 TIGR00150 HI0065_YjeE ATPase, 22.1 2.1E+02 0.0047 17.9 3.9 25 24-48 4-28 (133)
393 PF01250 Ribosomal_S6: Ribosom 22.1 1.2E+02 0.0026 17.3 2.6 29 22-50 12-41 (92)
394 cd05831 Ribosomal_P1 Ribosomal 22.0 97 0.0021 18.6 2.2 24 76-99 12-35 (103)
395 TIGR01202 bchC 2-desacetyl-2-h 22.0 1E+02 0.0022 21.7 2.7 21 30-50 212-232 (308)
396 PF04298 Zn_peptidase_2: Putat 21.8 1.8E+02 0.0039 20.2 3.7 28 79-106 34-62 (222)
397 PRK10475 23S rRNA pseudouridin 21.7 1.1E+02 0.0025 21.8 2.9 29 78-109 183-212 (290)
398 KOG0780 Signal recognition par 21.5 2.7E+02 0.0058 21.5 4.8 45 11-55 184-228 (483)
399 PRK11783 rlmL 23S rRNA m(2)G24 21.4 1.2E+02 0.0025 24.6 3.2 21 28-48 635-655 (702)
400 COG3870 Uncharacterized protei 21.3 1.5E+02 0.0033 17.9 2.9 26 83-108 12-37 (109)
401 cd00595 NDPk Nucleoside diphos 21.3 1.1E+02 0.0024 19.0 2.5 22 83-104 16-37 (133)
402 cd04411 Ribosomal_P1_P2_L12p R 21.2 89 0.0019 18.9 2.0 23 77-99 12-34 (105)
403 PRK11611 enhanced serine sensi 21.1 2.1E+02 0.0045 20.2 4.0 34 77-110 99-132 (246)
404 COG2520 Predicted methyltransf 21.1 1.4E+02 0.0031 22.1 3.3 41 9-55 255-295 (341)
405 PF01709 Transcrip_reg: Transc 21.0 74 0.0016 22.1 1.8 19 78-96 100-118 (234)
406 cd04883 ACT_AcuB C-terminal AC 21.0 1.1E+02 0.0025 16.0 2.3 17 83-99 53-69 (72)
407 cd08237 ribitol-5-phosphate_DH 21.0 1.2E+02 0.0026 21.7 3.0 21 30-50 237-257 (341)
408 PF11599 AviRa: RRNA methyltra 20.9 1.7E+02 0.0038 20.5 3.5 23 26-48 191-213 (246)
409 PF08158 NUC130_3NT: NUC130/3N 20.9 45 0.00097 17.5 0.5 26 15-41 1-26 (52)
410 KOG0061 Transporter, ABC super 20.9 3.6E+02 0.0079 21.6 5.7 60 27-99 208-270 (613)
411 PF03434 DUF276: DUF276 ; Int 20.9 1.1E+02 0.0024 21.6 2.6 23 24-46 53-75 (291)
412 PF08351 DUF1726: Domain of un 20.8 1.5E+02 0.0033 17.3 2.9 25 29-53 25-49 (92)
413 smart00596 PRE_C2HC PRE_C2HC d 20.8 1.7E+02 0.0037 16.3 3.9 20 85-104 2-21 (69)
414 COG0026 PurK Phosphoribosylami 20.8 2.3E+02 0.0049 21.4 4.3 34 26-59 227-272 (375)
415 smart00650 rADc Ribosomal RNA 20.8 1.2E+02 0.0027 19.3 2.7 44 2-48 66-112 (169)
416 cd07986 LPLAT_ACT14924-like Ly 20.8 1.4E+02 0.003 19.9 3.0 21 27-47 83-103 (210)
417 smart00463 SMR Small MutS-rela 20.7 1.2E+02 0.0027 16.6 2.4 24 20-43 6-29 (80)
418 COG1064 AdhP Zn-dependent alco 20.6 2.4E+02 0.0052 20.9 4.4 22 31-52 241-262 (339)
419 PRK10309 galactitol-1-phosphat 20.6 1.1E+02 0.0024 21.8 2.7 22 30-51 241-262 (347)
420 PRK00299 sulfur transfer prote 20.5 1.8E+02 0.0039 16.4 6.8 47 29-104 23-69 (81)
421 PRK06402 rpl12p 50S ribosomal 20.5 91 0.002 19.0 1.9 23 77-99 12-34 (106)
422 PF06135 DUF965: Bacterial pro 20.4 80 0.0017 18.2 1.5 20 25-44 14-33 (79)
423 PRK12570 N-acetylmuramic acid- 20.4 1.3E+02 0.0027 21.7 2.9 22 28-49 44-65 (296)
424 PF07991 IlvN: Acetohydroxy ac 20.4 2.1E+02 0.0045 18.9 3.6 34 11-49 61-95 (165)
425 COG1831 Predicted metal-depend 20.2 3.5E+02 0.0075 19.6 5.1 26 78-103 167-192 (285)
426 TIGR00274 N-acetylmuramic acid 20.1 1.4E+02 0.0031 21.3 3.1 22 28-49 43-64 (291)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.95 E-value=6.5e-28 Score=170.25 Aligned_cols=115 Identities=44% Similarity=0.730 Sum_probs=103.0
Q ss_pred CCCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC-CCCCchhhhhchhccchhcccCCCc
Q 048196 1 MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE-LPETSTVSKRNSQLDVLMMTQNPSG 79 (115)
Q Consensus 1 ~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~g 79 (115)
.||||.+.|++|+||++||||||+|++|+++|+||+++|+|||+|+|.|.+.++ ....+..+......|+.|+..+.+|
T Consensus 227 ~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~G 306 (342)
T KOG3178|consen 227 AGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGG 306 (342)
T ss_pred cccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccc
Confidence 489999999999999999999999999999999999999999999999998886 3333223445677899999988779
Q ss_pred eeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196 80 KKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115 (115)
Q Consensus 80 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~ 115 (115)
++||.+||..++.++||.+.++.-..-..++||++|
T Consensus 307 kert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 307 KERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred eeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999998889999999986
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.92 E-value=9.8e-26 Score=154.74 Aligned_cols=91 Identities=26% Similarity=0.608 Sum_probs=77.9
Q ss_pred CCCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCC--CEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196 1 MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPED--GKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS 78 (115)
Q Consensus 1 ~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pg--g~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (115)
+||||+++|.+|+|++++|||+|+|+++.+||++++++|+|| |+|+|+|.+.++.+..+........+|++|++++ +
T Consensus 149 ~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~ 227 (241)
T PF00891_consen 149 PGDFFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-G 227 (241)
T ss_dssp ES-TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-S
T ss_pred cccHHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-C
Confidence 599999999999999999999999999999999999999999 9999999999988766532212357999999976 7
Q ss_pred ceeCCHHHHHHHHH
Q 048196 79 GKKRTKHEFLTLAT 92 (115)
Q Consensus 79 g~~rt~~e~~~ll~ 92 (115)
|++||.+||++||+
T Consensus 228 G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 228 GKERTEEEWEALLK 241 (241)
T ss_dssp SS-EEHHHHHHHHH
T ss_pred CCCcCHHHHHHHhC
Confidence 99999999999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.74 E-value=1.6e-17 Score=117.65 Aligned_cols=99 Identities=11% Similarity=0.240 Sum_probs=73.7
Q ss_pred CCCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhch-hccchhcccCCC
Q 048196 1 MDDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNS-QLDVLMMTQNPS 78 (115)
Q Consensus 1 ~gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~ 78 (115)
.||+++ ++|.+|+|++++++|+|+++.+.++|++++++|+|||+++|.|.+.++..... ...... ...+.|... -
T Consensus 205 ~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~--~ 281 (306)
T TIGR02716 205 AVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN-FDYLSHYILGAGMPFS--V 281 (306)
T ss_pred ecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch-hhHHHHHHHHcccccc--c
Confidence 489997 67778999999999999999999999999999999999999999887653221 111111 112222211 1
Q ss_pred ceeCCHHHHHHHHHhCCCCeeEEE
Q 048196 79 GKKRTKHEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~~~~ 102 (115)
...++.+||.+||++|||+.++++
T Consensus 282 ~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 282 LGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred ccCCCHHHHHHHHHHcCCCeeEec
Confidence 123457999999999999988764
No 4
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.35 E-value=3.4e-12 Score=86.05 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=64.5
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+||+.|++-|++|++.++.|++|+++|+|+|.|+|-|.+..... ..+|- ..++..||.+.|+++
T Consensus 123 YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~l 188 (218)
T PF05891_consen 123 YDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFREL 188 (218)
T ss_dssp EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHH
T ss_pred EeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHH
Confidence 4999999999999999999999999999999999999999877541 11231 246788999999999
Q ss_pred HHhCCCCeeEEEEc
Q 048196 91 ATGAGFSGTRFEWF 104 (115)
Q Consensus 91 l~~aGf~~~~~~~~ 104 (115)
|++||+++++...-
T Consensus 189 F~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 189 FKQAGLRLVKEEKQ 202 (218)
T ss_dssp HHHCT-EEEEEEE-
T ss_pred HHHcCCEEEEeccc
Confidence 99999999875443
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.34 E-value=4.9e-13 Score=91.74 Aligned_cols=105 Identities=12% Similarity=0.205 Sum_probs=72.7
Q ss_pred CCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhc-------
Q 048196 2 DDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMM------- 73 (115)
Q Consensus 2 gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~------- 73 (115)
||+.+ +.+..|++++..++|++++++..+++++++++|+|||.+++.|.+.+++...... ...+.+.
T Consensus 113 ~d~~~~~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~ 187 (239)
T TIGR00740 113 NDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-----LIDLHHQFKRANGY 187 (239)
T ss_pred CChhhCCCCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH-----HHHHHHHHHHHcCC
Confidence 56766 5566799999999999999889999999999999999999999876654322110 0010000
Q ss_pred ----------ccCCCceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEE
Q 048196 74 ----------TQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVR 111 (115)
Q Consensus 74 ----------~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~li 111 (115)
.....-+..|.+++.+++++|||+.+++......++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~ 235 (239)
T TIGR00740 188 SELEISQKRTALENVMRTDSIETHKARLKNVGFSHVELWFQCFNFGSL 235 (239)
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHHHHHHHHhHhHH
Confidence 00001245799999999999999977654333333333
No 6
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=4e-11 Score=77.93 Aligned_cols=108 Identities=21% Similarity=0.167 Sum_probs=70.4
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhc---cc
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMM---TQ 75 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~---~~ 75 (115)
||..+ +.+. .|++++..++|+++|. .+.|+++++.|+|||+++|.|...++..-.... .......... ..
T Consensus 33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 108 (160)
T PLN02232 33 GDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATV 108 (160)
T ss_pred echhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH--HHHHccchHhhhhHH
Confidence 56655 5554 3999999999999874 799999999999999999999876543111000 0000000000 00
Q ss_pred CCC-----------ceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEE
Q 048196 76 NPS-----------GKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDF 113 (115)
Q Consensus 76 ~~~-----------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~ 113 (115)
... ..-.+.+|+.++|+++||+.++..... +..++..+
T Consensus 109 ~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 158 (160)
T PLN02232 109 YDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA 158 (160)
T ss_pred hCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence 000 123588999999999999998877765 44455444
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.20 E-value=2.5e-10 Score=79.54 Aligned_cols=109 Identities=22% Similarity=0.184 Sum_probs=72.8
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchh--c-cc
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLM--M-TQ 75 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~--~-~~ 75 (115)
||..+ |++. .|+|++..++|+++|. .++|+++++.|+|||++++.|...++.+-.+... ...+...+ . ..
T Consensus 134 ~d~~~lp~~~~sfD~V~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 209 (261)
T PLN02233 134 GDATDLPFDDCYFDAITMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATG 209 (261)
T ss_pred cccccCCCCCCCEeEEEEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHH
Confidence 56555 5664 4999999999999874 7899999999999999999998766532111100 00000000 0 00
Q ss_pred CCC-----------ceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEE
Q 048196 76 NPS-----------GKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFY 114 (115)
Q Consensus 76 ~~~-----------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~ 114 (115)
.+. ..-.+.+|+.++++++||+.++..... +..++.-++
T Consensus 210 ~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 210 YGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred hCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 000 234689999999999999999887775 455555543
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.19 E-value=2.8e-10 Score=79.41 Aligned_cols=96 Identities=14% Similarity=0.205 Sum_probs=69.9
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS 78 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (115)
+|+.+ ++|. .|+|++..++||+++++..++|+++++.|+|||++++.|........... .... .... ..
T Consensus 106 ~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~--~~~~-----~~~~-~~ 177 (263)
T PTZ00098 106 NDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDE--EFKA-----YIKK-RK 177 (263)
T ss_pred CCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHH--HHHH-----HHHh-cC
Confidence 57766 6664 49999999999999777899999999999999999999987654321110 0100 0100 11
Q ss_pred ceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196 79 GKKRTKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
....+.+++.++|+++||+.++.....
T Consensus 178 ~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 178 YTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred CCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 223588999999999999999887654
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.15 E-value=3.3e-11 Score=82.75 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=41.4
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhcc-----chhc
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLD-----VLMM 73 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~-----l~~~ 73 (115)
||..+ |+|. .|++++++.+|+++|. .+.|+++++.|+|||+++|+|+..++.+--.. .+..++. +..+
T Consensus 105 ~da~~lp~~d~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~--~~~~y~~~ilP~~g~l 180 (233)
T PF01209_consen 105 GDAEDLPFPDNSFDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNPLLRA--LYKFYFKYILPLIGRL 180 (233)
T ss_dssp -BTTB--S-TT-EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH--HHHH------------
T ss_pred cCHHHhcCCCCceeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCchhhc--eeeeeecccccccccc
Confidence 56666 6775 3999999999999985 67999999999999999999998876521100 0000000 0000
Q ss_pred ccCCC-----------ceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196 74 TQNPS-----------GKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK 115 (115)
Q Consensus 74 ~~~~~-----------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~ 115 (115)
...+ .+-.+.+|+.++++++||+.++..+.. |..+++.++|
T Consensus 181 -~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 181 -LSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------------------------------------------
T ss_pred -cccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 0001 123367899999999999998887764 6677776655
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.13 E-value=1.4e-10 Score=80.05 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=66.8
Q ss_pred CCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-h-h---hhchhccchh--c
Q 048196 2 DDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST-V-S---KRNSQLDVLM--M 73 (115)
Q Consensus 2 gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~-~-~---~~~~~~~l~~--~ 73 (115)
||+.+ +.+..|++++..++|++++++..+++++++++|+|||.+++.|.+..++..... . . .+........ .
T Consensus 116 ~d~~~~~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei 195 (247)
T PRK15451 116 GDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEI 195 (247)
T ss_pred CChhhCCCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHH
Confidence 55555 455579999999999999988999999999999999999999977655432211 0 0 0000001100 0
Q ss_pred -----ccCCCceeCCHHHHHHHHHhCCCCeeEE
Q 048196 74 -----TQNPSGKKRTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 74 -----~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 101 (115)
.....-...|.++..+||++|||+.+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 196 SQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHHcCchhHHH
Confidence 0000112348899999999999987654
No 11
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.10 E-value=1.4e-09 Score=73.94 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=74.0
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhc----c
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMM----T 74 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~----~ 74 (115)
+|+.+ +.+. .|+|++++++|++++. ..+|+++.+.|+|||++++.+...+....-. .....+...++ .
T Consensus 110 ~d~~~~~~~~~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 184 (239)
T PRK00216 110 GDAEALPFPDNSFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGK 184 (239)
T ss_pred cccccCCCCCCCccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHH
Confidence 45555 3332 4999999999999874 6889999999999999999998765432110 00000000000 0
Q ss_pred cCCC------------ceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196 75 QNPS------------GKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK 115 (115)
Q Consensus 75 ~~~~------------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~ 115 (115)
...+ ...++.++|.++|+++||+.+++.... +..+++.++|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 185 LISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 0001 123578899999999999999988864 7789998876
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.05 E-value=1.9e-09 Score=73.47 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=73.9
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccchhcc---
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDVLMMT--- 74 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l~~~~--- 74 (115)
||..+ +++. .|+|++...+|++++. .++|+++.+.|+|||++++.|...+.... .... ...+...+-.
T Consensus 103 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~ 177 (231)
T TIGR02752 103 GNAMELPFDDNSFDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGK 177 (231)
T ss_pred echhcCCCCCCCccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhH
Confidence 45555 4554 4999999999999875 58999999999999999998865443211 1000 0000000000
Q ss_pred ------------cCCCceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196 75 ------------QNPSGKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK 115 (115)
Q Consensus 75 ------------~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~ 115 (115)
........+.+++.++|+++||+.++++... +..+++.++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 178 LFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0001123578899999999999999998886 7888888876
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.00 E-value=4.2e-09 Score=72.44 Aligned_cols=109 Identities=24% Similarity=0.293 Sum_probs=75.2
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccch-hccc--
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVL-MMTQ-- 75 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~-~~~~-- 75 (115)
||..+ |+|. .|+|.+++.||+++| ..+.|+++++.|+|||+++|.|+..++.+... .....+.+. .+-.
T Consensus 108 ~dAe~LPf~D~sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g 182 (238)
T COG2226 108 GDAENLPFPDNSFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIG 182 (238)
T ss_pred echhhCCCCCCccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhc
Confidence 66777 7885 399999999999997 57999999999999999999999887653321 111112222 1100
Q ss_pred --CC-Cc-----------eeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196 76 --NP-SG-----------KKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK 115 (115)
Q Consensus 76 --~~-~g-----------~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~ 115 (115)
.. +. +..+.+++.++++++||+.+...... +..++.-+.|
T Consensus 183 ~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 183 KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 00 11 23478899999999999998855554 4555555443
No 14
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.00 E-value=4.6e-09 Score=70.71 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=71.9
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhccc---
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQ--- 75 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~--- 75 (115)
||+.+ +.+. .|+++++.++|+.++ ...+++++++.|+|||++++.+...+...... . ....+...++..
T Consensus 95 ~d~~~~~~~~~~~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~ 169 (223)
T TIGR01934 95 ADAEALPFEDNSFDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANALLK--K-FYKFYLKNVLPSIGG 169 (223)
T ss_pred cchhcCCCCCCcEEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchhhH--H-HHHHHHHHhhhhhhh
Confidence 45555 4443 499999999999887 46899999999999999999987654331110 0 000000000000
Q ss_pred ----CCC---------ceeCCHHHHHHHHHhCCCCeeEEEEcCCc-eEEEEEEC
Q 048196 76 ----NPS---------GKKRTKHEFLTLATGAGFSGTRFEWFTCN-LWVRDFYK 115 (115)
Q Consensus 76 ----~~~---------g~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~lie~~~ 115 (115)
..+ ....+.++|..+|+++||+.+++.+.... ..+++++|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 170 LISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 000 12347889999999999999998888644 56777765
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.99 E-value=4e-09 Score=75.97 Aligned_cols=89 Identities=21% Similarity=0.313 Sum_probs=64.5
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS 78 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (115)
||+.+ +++. .|+|++..++|+++|. .++|+++++.|+|||++++.+...++... .+. ..+..+
T Consensus 167 gD~e~lp~~~~sFDvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~----~r~--~~~~~~------ 232 (340)
T PLN02490 167 GDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWL----SRF--FADVWM------ 232 (340)
T ss_pred ccHHhCCCCCCceeEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhH----HHH--hhhhhc------
Confidence 56555 5553 4999999999999986 47899999999999999998765443211 110 011111
Q ss_pred ceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196 79 GKKRTKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
...+.+|+.++|+++||+.+++..+.
T Consensus 233 -~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 233 -LFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred -cCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 12578999999999999999887764
No 16
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.98 E-value=4.6e-09 Score=73.32 Aligned_cols=93 Identities=14% Similarity=0.221 Sum_probs=66.5
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS 78 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (115)
||+.+ +++. .|+|+...++|++++. .++++++++.|+|||++++.+....... ... ...+..+... ..
T Consensus 135 ~d~~~l~~~~~~fD~Vi~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~~-----~~~~~~~~~~-~~ 205 (272)
T PRK11873 135 GEIEALPVADNSVDVIISNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL-PEE-----IRNDAELYAG-CV 205 (272)
T ss_pred cchhhCCCCCCceeEEEEcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC-CHH-----HHHhHHHHhc-cc
Confidence 56655 5554 3999999999998875 6899999999999999999998765421 111 1112222221 13
Q ss_pred ceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196 79 GKKRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
+...+..+|.++|+++||..+++..
T Consensus 206 ~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 206 AGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred cCCCCHHHHHHHHHHCCCCceEEEe
Confidence 4567889999999999999987644
No 17
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.96 E-value=6.8e-09 Score=74.42 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=60.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch--hhhhchhccchhcccCCCceeCCHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST--VSKRNSQLDVLMMTQNPSGKKRTKHEFL 88 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~rt~~e~~ 88 (115)
.|+|++..++||.+|. ..+|++++++|+|||++++.+.+.+....... ..++. .|- ..-..+|.+++.
T Consensus 190 FD~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~-----~~~---~~~~lps~~~l~ 259 (322)
T PRK15068 190 FDTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYA-----KMR---NVYFIPSVPALK 259 (322)
T ss_pred cCEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHh-----cCc---cceeCCCHHHHH
Confidence 4999999999999875 68999999999999999887766665432210 01110 010 011246899999
Q ss_pred HHHHhCCCCeeEEEEc
Q 048196 89 TLATGAGFSGTRFEWF 104 (115)
Q Consensus 89 ~ll~~aGf~~~~~~~~ 104 (115)
+|++++||+.+++...
T Consensus 260 ~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 260 NWLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHHcCCceEEEEeC
Confidence 9999999999988755
No 18
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.94 E-value=2.9e-09 Score=68.13 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=60.3
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+|++..+||+++| ..++|+++++.|+|||.+++.+...... .. ..... +...... ......+|.++|.++
T Consensus 79 fD~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~-~~---~~~~~-~~~~~~~-~~~~~~~~~~~~~~l 150 (161)
T PF13489_consen 79 FDLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDP-SP---RSFLK-WRYDRPY-GGHVHFFSPDELRQL 150 (161)
T ss_dssp EEEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSH-HH---HHHHH-CCGTCHH-TTTTEEBBHHHHHHH
T ss_pred hhhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcch-hh---hHHHh-cCCcCcc-CceeccCCHHHHHHH
Confidence 499999999999997 5899999999999999999999876431 11 00111 1111110 024567899999999
Q ss_pred HHhCCCCeeE
Q 048196 91 ATGAGFSGTR 100 (115)
Q Consensus 91 l~~aGf~~~~ 100 (115)
++++||++++
T Consensus 151 l~~~G~~iv~ 160 (161)
T PF13489_consen 151 LEQAGFEIVE 160 (161)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCEEEE
Confidence 9999999875
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.94 E-value=8.4e-09 Score=77.16 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=68.2
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS 78 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (115)
+|+++ ++|. .|+|++..+++|++|. .++|+++++.|+|||++++.|........... .... .. ..+
T Consensus 321 ~d~~~~~~~~~~fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~-----~~-~~g 389 (475)
T PLN02336 321 ADCTKKTYPDNSFDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPE---FAEY-----IK-QRG 389 (475)
T ss_pred cCcccCCCCCCCEEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHH---HHHH-----HH-hcC
Confidence 67777 5664 4999999999999875 68999999999999999999987654322211 1111 11 123
Q ss_pred ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 79 GKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
...++..++.++++++||+++++...
T Consensus 390 ~~~~~~~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 390 YDLHDVQAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred CCCCCHHHHHHHHHHCCCeeeeeecc
Confidence 45678999999999999999876543
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=98.89 E-value=2.2e-08 Score=72.29 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=65.8
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCC-chhh-hhchhccchhcccC
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPET-STVS-KRNSQLDVLMMTQN 76 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~-~~~~-~~~~~~~l~~~~~~ 76 (115)
||+.+ +++. .|+|++..++||++|. .++++++++.|+|||+++|.+......... .... .....++-.....
T Consensus 175 ~D~~~~~~~~~~FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~- 251 (340)
T PLN02244 175 ADALNQPFEDGQFDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAY- 251 (340)
T ss_pred cCcccCCCCCCCccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhc-
Confidence 57766 5664 3999999999999884 689999999999999999998754322111 0000 0000000000000
Q ss_pred CCceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196 77 PSGKKRTKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 77 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
.--...+.++|.++++++||..+++....
T Consensus 252 ~~p~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 252 YLPAWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred cCCCCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 00112478999999999999998876553
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.86 E-value=2.4e-08 Score=71.32 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=61.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc--hhhhhchhccchhcccCCCceeCCHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS--TVSKRNSQLDVLMMTQNPSGKKRTKHEFL 88 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~rt~~e~~ 88 (115)
.|+|++..++||+++. ...|++++++|+|||++++.+.+.+...... +..++. .|. + .-...|.+++.
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~-----k~~--n-v~flpS~~~L~ 258 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYA-----KMK--N-VYFIPSVSALK 258 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHH-----hcc--c-cccCCCHHHHH
Confidence 4999999999999876 6899999999999999999887766442211 001111 010 0 11235889999
Q ss_pred HHHHhCCCCeeEEEEc
Q 048196 89 TLATGAGFSGTRFEWF 104 (115)
Q Consensus 89 ~ll~~aGf~~~~~~~~ 104 (115)
++++++||+.+++...
T Consensus 259 ~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 259 NWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHCCCeEEEEEec
Confidence 9999999999987654
No 22
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.81 E-value=4.3e-08 Score=65.88 Aligned_cols=102 Identities=20% Similarity=0.107 Sum_probs=81.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+|+..+++|-.+-+.+..+++.+.+.|+|||.+++.-+...+..-.++ -...||...-...+....|..+++.++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~l 179 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEAL 179 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHH
Confidence 39999999999999999999999999999999999999987765422111 123355554443457788999999999
Q ss_pred HHhCCCCeeEEEEcCCceEEEEEEC
Q 048196 91 ATGAGFSGTRFEWFTCNLWVRDFYK 115 (115)
Q Consensus 91 l~~aGf~~~~~~~~~~~~~lie~~~ 115 (115)
.+++||+..+.+.++.+.-++..+|
T Consensus 180 A~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 180 AAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHCCCccCcccccCCCCeEEEEeC
Confidence 9999999999999986665555554
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.75 E-value=8.2e-08 Score=65.09 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=63.7
Q ss_pred CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196 2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG 79 (115)
Q Consensus 2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 79 (115)
+|+.+ +.+. .|+|+...++|++++. ..+++++++.|+|||++++.+...+...... . . ....
T Consensus 57 ~d~~~~~~~~~fD~I~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~--~------~~~~ 120 (224)
T smart00828 57 RDSAKDPFPDTYDLVFGFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIE------H--E------ETTS 120 (224)
T ss_pred cccccCCCCCCCCEeehHHHHHhCCCH--HHHHHHHHHHcCCCCEEEEEEcccccCcccc------c--c------cccc
Confidence 45544 3444 5999999999999874 7999999999999999999987543211100 0 0 0011
Q ss_pred eeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196 80 KKRTKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 80 ~~rt~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
...+.++|.++++++||+.++...+.
T Consensus 121 ~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 121 YLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred ccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 13578999999999999999877664
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.67 E-value=3.2e-07 Score=61.47 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=59.2
Q ss_pred CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196 2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG 79 (115)
Q Consensus 2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 79 (115)
+|+.+ +++. .|+|++..++|++++++..+++++++++|+|||++++.+.+..++...+ . . ..
T Consensus 85 ~d~~~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~------~--~--------~~ 148 (197)
T PRK11207 85 VDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT------V--G--------FP 148 (197)
T ss_pred cChhhCCcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC------C--C--------CC
Confidence 45555 4444 4999999999999988899999999999999999888776554331100 0 0 01
Q ss_pred eeCCHHHHHHHHHhCCCCeeEE
Q 048196 80 KKRTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 80 ~~rt~~e~~~ll~~aGf~~~~~ 101 (115)
...+.+|+.++++ ||+.+..
T Consensus 149 ~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 149 FAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CccCHHHHHHHhC--CCeEEEe
Confidence 2257789999996 8887665
No 25
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.67 E-value=1.3e-07 Score=65.53 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=54.2
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhc--hhccchh--cccCCCceeCCHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRN--SQLDVLM--MTQNPSGKKRTKHE 86 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~--~~~~l~~--~~~~~~g~~rt~~e 86 (115)
.|+|+++.++|+++|. .+++++++++|+|||++++......+.+......... ..+...+ ..........+.++
T Consensus 90 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 167 (255)
T PRK14103 90 TDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAG 167 (255)
T ss_pred ceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHH
Confidence 5999999999999875 6899999999999999998632211110000000000 0011000 00011233468999
Q ss_pred HHHHHHhCCCCeeE
Q 048196 87 FLTLATGAGFSGTR 100 (115)
Q Consensus 87 ~~~ll~~aGf~~~~ 100 (115)
+.++|+++||++..
T Consensus 168 ~~~~l~~aGf~v~~ 181 (255)
T PRK14103 168 YAELLTDAGCKVDA 181 (255)
T ss_pred HHHHHHhCCCeEEE
Confidence 99999999998543
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.62 E-value=7.6e-08 Score=69.03 Aligned_cols=89 Identities=11% Similarity=0.002 Sum_probs=59.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccC---CCceeCCHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQN---PSGKKRTKHEF 87 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~g~~rt~~e~ 87 (115)
.|+|++..++||++|. ..+|+++++.|+|||.++|........ .........-.+.-.+.. ...+.+|.+|+
T Consensus 199 FD~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL 273 (322)
T PLN02396 199 FDAVLSLEVIEHVANP--AEFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWLPKGTHQWSSFVTPEEL 273 (322)
T ss_pred CCEEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHH
Confidence 4999999999999986 589999999999999999986532210 000000000000000100 01245799999
Q ss_pred HHHHHhCCCCeeEEEEc
Q 048196 88 LTLATGAGFSGTRFEWF 104 (115)
Q Consensus 88 ~~ll~~aGf~~~~~~~~ 104 (115)
.++|+++||+++++..+
T Consensus 274 ~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 274 SMILQRASVDVKEMAGF 290 (322)
T ss_pred HHHHHHcCCeEEEEeee
Confidence 99999999999887543
No 27
>PRK08317 hypothetical protein; Provisional
Probab=98.61 E-value=3.1e-07 Score=62.17 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=61.2
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc-hhhhhchhccchhcccCC
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS-TVSKRNSQLDVLMMTQNP 77 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 77 (115)
+|+.+ +++. .|+|++.+++|++++. ..+++++++.|+|||.+++.+.......... ........... .. ..
T Consensus 76 ~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~ 150 (241)
T PRK08317 76 GDADGLPFPDGSFDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNF--WS-DH 150 (241)
T ss_pred cccccCCCCCCCceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHH--HH-hc
Confidence 45544 4443 4999999999999985 6789999999999999999885432211000 00000011111 10 01
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
.....+..+|.++++++||..+++..
T Consensus 151 ~~~~~~~~~~~~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 151 FADPWLGRRLPGLFREAGLTDIEVEP 176 (241)
T ss_pred CCCCcHHHHHHHHHHHcCCCceeEEE
Confidence 22234567899999999999876544
No 28
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.56 E-value=3.6e-07 Score=63.25 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh--chhccc------
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR--NSQLDV------ 70 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~--~~~~~l------ 70 (115)
||--+ |+|. .|.|.+..-+.+|+|. .+.|+++++.|||||++.+.|+-.-+... ..++ +..++.
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~ 240 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGE 240 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccHH---HHHHHHhhhhhhhchhhH
Confidence 45555 6775 4999999999999995 79999999999999999999986555311 1111 111111
Q ss_pred ---------hhcccCCCceeCCHHHHHHHHHhCCCCeeE
Q 048196 71 ---------LMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 71 ---------~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 100 (115)
..|+.+ =-+-.+.+|+..+.++|||..+.
T Consensus 241 ~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 241 IIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 111110 01334788999999999999986
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.49 E-value=6.7e-07 Score=67.01 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=59.9
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+|++..++|++++++..++++++++.|+|||++++.|.......... . . ......|+..+|.++
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTKV 169 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHHH
Confidence 4999999999999999899999999999999999999998755432110 0 0 113344678899999
Q ss_pred HHhCCCCeeE
Q 048196 91 ATGAGFSGTR 100 (115)
Q Consensus 91 l~~aGf~~~~ 100 (115)
|.++||....
T Consensus 170 f~~~~~~~~~ 179 (475)
T PLN02336 170 FKECHTRDED 179 (475)
T ss_pred HHHheeccCC
Confidence 9999998763
No 30
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.48 E-value=1.2e-07 Score=55.31 Aligned_cols=44 Identities=20% Similarity=0.420 Sum_probs=36.9
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii 47 (115)
+|+.+ ++|. .|+|++.+++|++ ++..++++++++.|+|||+++|
T Consensus 49 ~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 49 GDAEDLPFPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SBTTSSSS-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ehHHhCccccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 46666 6774 3999999999999 4568999999999999999986
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.47 E-value=3.4e-07 Score=63.51 Aligned_cols=95 Identities=11% Similarity=0.011 Sum_probs=59.3
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc----hhhhhchhccchh-cccCCCceeCCHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS----TVSKRNSQLDVLM-MTQNPSGKKRTKH 85 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~----~~~~~~~~~~l~~-~~~~~~g~~rt~~ 85 (115)
.|+|++..++|++++. .++|+++.+.|+|||++++.........-.. ........+.... .... .....+.+
T Consensus 113 fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~ 189 (255)
T PRK11036 113 VDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDPE 189 (255)
T ss_pred CCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCHH
Confidence 4999999999999876 5899999999999999998765433110000 0000000000000 0000 12235789
Q ss_pred HHHHHHHhCCCCeeEEEEcCCce
Q 048196 86 EFLTLATGAGFSGTRFEWFTCNL 108 (115)
Q Consensus 86 e~~~ll~~aGf~~~~~~~~~~~~ 108 (115)
++.++|+++||+++...-+.++.
T Consensus 190 ~l~~~l~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 190 QVYQWLEEAGWQIMGKTGVRVFH 212 (255)
T ss_pred HHHHHHHHCCCeEeeeeeEEEEe
Confidence 99999999999998766554333
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.47 E-value=1.9e-06 Score=57.61 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=54.9
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+|+++.++|++++++...++++++++|+|||+++|.+....+....+ . +.....+.+|+.++
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~--------~--------~~~~~~~~~el~~~ 158 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH--------M--------PFSFTFKEDELRQY 158 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC--------C--------CcCccCCHHHHHHH
Confidence 5999999999999988889999999999999999888776543321110 0 01123578999999
Q ss_pred HHhCCCCeeEEE
Q 048196 91 ATGAGFSGTRFE 102 (115)
Q Consensus 91 l~~aGf~~~~~~ 102 (115)
|+ +|++....
T Consensus 159 f~--~~~~~~~~ 168 (195)
T TIGR00477 159 YA--DWELLKYN 168 (195)
T ss_pred hC--CCeEEEee
Confidence 95 58776654
No 33
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.47 E-value=1.3e-06 Score=59.14 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=66.9
Q ss_pred CCCCC-CCCc-----ccEEEeccccccCCh-HHHHHHHHHHHhhCCCCCE-----EEEEeeecCCCCCCchhhhhchhcc
Q 048196 2 DDMFQ-NVPK-----GDAIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGK-----VIVVESILPELPETSTVSKRNSQLD 69 (115)
Q Consensus 2 gd~~~-~~p~-----~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~-----lii~d~~~~~~~~~~~~~~~~~~~~ 69 (115)
.||++ |+|. .|+|.+|.||...|+ .+.-++|+++++-|+|+|. |+|+ +|..
T Consensus 90 qDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV---lP~~-------------- 152 (219)
T PF11968_consen 90 QDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV---LPLP-------------- 152 (219)
T ss_pred eccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE---eCch--------------
Confidence 59999 8983 399999999999996 5589999999999999999 7763 3322
Q ss_pred chhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196 70 VLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 70 l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
++ .|++--+.+.|.++++.-||..++.+...
T Consensus 153 ---Cv--~NSRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 153 ---CV--TNSRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred ---Hh--hcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 11 37777788999999999999998876553
No 34
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.43 E-value=4.6e-07 Score=63.33 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=41.8
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+|+.+ +.|. .|+|++++++|++++++..+++++++++|+|||.+++..
T Consensus 192 ~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 192 HNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 57777 3433 499999999999999999999999999999999999854
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.32 E-value=1.2e-06 Score=61.60 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=62.8
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHH
Q 048196 10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLT 89 (115)
Q Consensus 10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ 89 (115)
+.|.|+.-.++.|++.+.....++++.+.|+|||++++......+.............+.-. .+++|...+.+++..
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ky---iFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKY---IFPGGYLPSLSEILR 203 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHH---TSTTS---BHHHHHH
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEe---eCCCCCCCCHHHHHH
Confidence 45999999999999998889999999999999999999887776542110000000111111 247899999999999
Q ss_pred HHHhCCCCeeEEEEc
Q 048196 90 LATGAGFSGTRFEWF 104 (115)
Q Consensus 90 ll~~aGf~~~~~~~~ 104 (115)
.++++||++..+...
T Consensus 204 ~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 204 AAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHTT-EEEEEEE-
T ss_pred HHhcCCEEEEEEEEc
Confidence 999999998877655
No 36
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.31 E-value=5.1e-06 Score=58.99 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=62.2
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc--hhhhhchhccchhcccCCC-ceeCCHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS--TVSKRNSQLDVLMMTQNPS-GKKRTKHEF 87 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~-g~~rt~~e~ 87 (115)
.|+|++--||.|..++ ...|+.++++|+|||.+++--.+++.+.... +..+++. | .| -...|.+.+
T Consensus 183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~------m---~nv~FiPs~~~L 251 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAK------M---RNVWFIPSVAAL 251 (315)
T ss_pred cCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccC------C---CceEEeCCHHHH
Confidence 3999999999999986 8999999999999999988555666543321 1111111 1 12 345689999
Q ss_pred HHHHHhCCCCeeEEEEc
Q 048196 88 LTLATGAGFSGTRFEWF 104 (115)
Q Consensus 88 ~~ll~~aGf~~~~~~~~ 104 (115)
..|++++||+.++++.+
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999998765
No 37
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.30 E-value=1.1e-05 Score=57.35 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=37.6
Q ss_pred CCCCCC--CCc-----c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196 2 DDMFQN--VPK-----G-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 2 gd~~~~--~p~-----~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii 47 (115)
|||.+. ++. . .++++...+++++++++..+|++++++|+|||.++|
T Consensus 122 gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 122 ADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 688763 332 1 466677899999999999999999999999999986
No 38
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.25 E-value=4.6e-06 Score=57.35 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=65.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce---eCCHHHHH
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK---KRTKHEFL 88 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~---~rt~~e~~ 88 (115)
|.+.+-.+|...+.+.-...++++++.|+|||.|++-|+...+-..... . -...++-+..+ .++|. -.+.++++
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF-~-~~~~i~~nfYV-RgDGT~~YfF~~eeL~ 222 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF-K-KGQCISENFYV-RGDGTRAYFFTEEELD 222 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc-c-CCceeecceEE-ccCCceeeeccHHHHH
Confidence 9999999999999999999999999999999999999987665422110 0 11223333333 23443 24899999
Q ss_pred HHHHhCCCCeeEE
Q 048196 89 TLATGAGFSGTRF 101 (115)
Q Consensus 89 ~ll~~aGf~~~~~ 101 (115)
+||++|||..++.
T Consensus 223 ~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 223 ELFTKAGFEEVQL 235 (264)
T ss_pred HHHHhcccchhcc
Confidence 9999999998753
No 39
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.21 E-value=3e-05 Score=50.98 Aligned_cols=85 Identities=20% Similarity=0.124 Sum_probs=62.7
Q ss_pred CCCCCCCC-cccEEEeccccccCChHH-------------------HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchh
Q 048196 2 DDMFQNVP-KGDAIFMKWILHNWSDDH-------------------CLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61 (115)
Q Consensus 2 gd~~~~~p-~~D~v~~~~vlh~~~d~~-------------------~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~ 61 (115)
+|.++..+ +.|++++...+|..+++. ..++++++.+.|+|||++++.+....
T Consensus 73 ~d~~~~~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-------- 144 (179)
T TIGR00537 73 TDLFKGVRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-------- 144 (179)
T ss_pred cccccccCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------
Confidence 56665333 459999998887666431 35789999999999999999762211
Q ss_pred hhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196 62 SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115 (115)
Q Consensus 62 ~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~ 115 (115)
...++.++++++||....+...+-++--++++|
T Consensus 145 ---------------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 145 ---------------------GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred ---------------------ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 136888999999999988888777776666654
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.21 E-value=1.4e-05 Score=56.51 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=58.3
Q ss_pred CCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196 3 DMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK 80 (115)
Q Consensus 3 d~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ 80 (115)
|+.+ +++. .|+|++..++|++++++...+++++++.|+|||.++++.....+....+ . +...
T Consensus 175 D~~~~~~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~--------p~~~ 238 (287)
T PRK12335 175 DINSASIQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------M--------PFSF 238 (287)
T ss_pred chhcccccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC--------C--------CCCc
Confidence 4444 2343 4999999999999988899999999999999999888765543331110 0 1112
Q ss_pred eCCHHHHHHHHHhCCCCeeEEE
Q 048196 81 KRTKHEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 81 ~rt~~e~~~ll~~aGf~~~~~~ 102 (115)
..+.+|+.++++ +|++++..
T Consensus 239 ~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 239 TFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred ccCHHHHHHHhC--CCEEEEEe
Confidence 256889999995 58877653
No 41
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.20 E-value=6.5e-06 Score=56.13 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=56.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccchhccc--CCCceeCCHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDVLMMTQ--NPSGKKRTKHEF 87 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l~~~~~--~~~g~~rt~~e~ 87 (115)
.|+|++++++++.++. ..+|+++.+.|+|||++++..... .... ..... ....-...... ....+..+.++|
T Consensus 115 fD~Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (233)
T PRK05134 115 FDVVTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLNR--NLKS-YLLAIVGAEYVLRMLPKGTHDYKKFIKPSEL 189 (233)
T ss_pred ccEEEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecCC--ChHH-HHHHHhhHHHHhhhcCcccCchhhcCCHHHH
Confidence 4999999999999875 578999999999999998865321 1100 00000 00000000000 011334588999
Q ss_pred HHHHHhCCCCeeEEEE
Q 048196 88 LTLATGAGFSGTRFEW 103 (115)
Q Consensus 88 ~~ll~~aGf~~~~~~~ 103 (115)
.++++++||++++...
T Consensus 190 ~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 190 AAWLRQAGLEVQDITG 205 (233)
T ss_pred HHHHHHCCCeEeeeee
Confidence 9999999999987753
No 42
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.17 E-value=2.2e-06 Score=59.89 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=50.0
Q ss_pred EEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHH
Q 048196 13 AIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLA 91 (115)
Q Consensus 13 ~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll 91 (115)
.+++..+||+.+| ++...+++.++++|+|||.|+|.....+..+.. .... ..+.-.. ...+..||.+|+.++|
T Consensus 153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~--~~~~---~~~~~~~-~~~~~~Rs~~ei~~~f 226 (267)
T PF04672_consen 153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER--AEAL---EAVYAQA-GSPGRPRSREEIAAFF 226 (267)
T ss_dssp EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH--HHHH---HHHHHHC-CS----B-HHHHHHCC
T ss_pred eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH--HHHH---HHHHHcC-CCCceecCHHHHHHHc
Confidence 6888999999998 679999999999999999999998876543211 1111 1111111 2367889999999999
Q ss_pred HhCCCCeeE
Q 048196 92 TGAGFSGTR 100 (115)
Q Consensus 92 ~~aGf~~~~ 100 (115)
. ||+.++
T Consensus 227 ~--g~elve 233 (267)
T PF04672_consen 227 D--GLELVE 233 (267)
T ss_dssp T--TSEE-T
T ss_pred C--CCccCC
Confidence 5 888764
No 43
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.16 E-value=7.5e-06 Score=55.36 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=56.3
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccchhccc-C-CCceeCCHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDVLMMTQ-N-PSGKKRTKHEF 87 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l~~~~~-~-~~g~~rt~~e~ 87 (115)
.|++++.+++|+..+. ..+|+++.+.|+|||.+++.....+.. ...... ...+....... . ......+..+|
T Consensus 113 ~D~i~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (224)
T TIGR01983 113 FDVVTCMEVLEHVPDP--QAFIRACAQLLKPGGILFFSTINRTPK---SYLLAIVGAEYILRIVPKGTHDWEKFIKPSEL 187 (224)
T ss_pred ccEEEehhHHHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCch---HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHH
Confidence 4999999999999876 589999999999999998865432110 000000 00000000000 0 01233478899
Q ss_pred HHHHHhCCCCeeEEEE
Q 048196 88 LTLATGAGFSGTRFEW 103 (115)
Q Consensus 88 ~~ll~~aGf~~~~~~~ 103 (115)
.++++++||+++++..
T Consensus 188 ~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 188 TSWLESAGLRVKDVKG 203 (224)
T ss_pred HHHHHHcCCeeeeeee
Confidence 9999999999987764
No 44
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.12 E-value=4.3e-06 Score=59.18 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=41.4
Q ss_pred CCCCC-CCC--c-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 2 DDMFQ-NVP--K-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 2 gd~~~-~~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+|.++ +.| . -|+|++++++.+++++...+++++++++|+|||.|++-.
T Consensus 211 ~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 211 LNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred ccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 56777 444 2 399999999999999999999999999999999988844
No 45
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.12 E-value=5.6e-05 Score=51.35 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=57.7
Q ss_pred CCCCC-CC---CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCC-CchhhhhchhccchhcccC
Q 048196 2 DDMFQ-NV---PKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPE-TSTVSKRNSQLDVLMMTQN 76 (115)
Q Consensus 2 gd~~~-~~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 76 (115)
||+++ +. +..|.++-+.++|+++.+...+.++++.++|+|||++++.-...++... ++
T Consensus 101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gp----------------- 163 (213)
T TIGR03840 101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGP----------------- 163 (213)
T ss_pred ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCc-----------------
Confidence 68887 32 2249999999999999999999999999999999998776655432211 11
Q ss_pred CCceeCCHHHHHHHHHhCCCCeeEE
Q 048196 77 PSGKKRTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 77 ~~g~~rt~~e~~~ll~~aGf~~~~~ 101 (115)
-...+.+|++++|.. +|.+..+
T Consensus 164 --p~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 164 --PFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred --CCCCCHHHHHHHhcC-CceEEEE
Confidence 012578899999963 4555444
No 46
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.06 E-value=1.5e-06 Score=55.64 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=56.8
Q ss_pred CCCCC-C--CC-cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196 2 DDMFQ-N--VP-KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP 77 (115)
Q Consensus 2 gd~~~-~--~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (115)
+|+.+ + ++ ..|+|+...++|++++. ..+++++++.|++||.+++.+......-... ...... +.........
T Consensus 61 ~d~~~l~~~~~~~~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 136 (152)
T PF13847_consen 61 GDIEDLPQELEEKFDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPEQ-LEELMN-LYSEVWSMIY 136 (152)
T ss_dssp SBTTCGCGCSSTTEEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHH-HHHHHH-HHHHHHHHCC
T ss_pred eehhccccccCCCeeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHHH-HHHHHH-HHHHHhhhhh
Confidence 56777 4 33 45999999999999986 5899999999999999999998832221111 100001 0111111111
Q ss_pred CceeCCHHHHHHHHHhCC
Q 048196 78 SGKKRTKHEFLTLATGAG 95 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aG 95 (115)
... +.++|..+|++||
T Consensus 137 -~~~-~~~~~~~~~~~ag 152 (152)
T PF13847_consen 137 -IGN-DKEEWKYILEEAG 152 (152)
T ss_dssp -----CCCGHHHHHHHTT
T ss_pred -ccc-CHHHHHHHHHhcC
Confidence 112 7789999999998
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.05 E-value=4.5e-05 Score=56.05 Aligned_cols=86 Identities=9% Similarity=0.088 Sum_probs=63.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+|+...++++.+++....+++++++.|+|||++++.+...+...... ....+- .. +++|...+.+++.+.
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~--yi-fp~g~lps~~~i~~~ 300 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINK--YI-FPNGCLPSVRQIAQA 300 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCcee--ee-cCCCcCCCHHHHHHH
Confidence 5999999999999988888999999999999999999876555432111 011111 11 367778889998888
Q ss_pred HHhCCCCeeEEEEcC
Q 048196 91 ATGAGFSGTRFEWFT 105 (115)
Q Consensus 91 l~~aGf~~~~~~~~~ 105 (115)
++ .||.+..+...+
T Consensus 301 ~~-~~~~v~d~~~~~ 314 (383)
T PRK11705 301 SE-GLFVMEDWHNFG 314 (383)
T ss_pred HH-CCcEEEEEecCh
Confidence 66 589887765543
No 48
>PRK05785 hypothetical protein; Provisional
Probab=98.04 E-value=3.3e-05 Score=52.83 Aligned_cols=109 Identities=7% Similarity=-0.062 Sum_probs=65.3
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh--chhccchhcccC
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR--NSQLDVLMMTQN 76 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 76 (115)
||+.+ |++. .|++++..++|+++|. .+.|++++++|+| .++|+|...++..-....-.+ ............
T Consensus 99 ~d~~~lp~~d~sfD~v~~~~~l~~~~d~--~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~ 174 (226)
T PRK05785 99 GSFEALPFRDKSFDVVMSSFALHASDNI--EKVIAEFTRVSRK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAG 174 (226)
T ss_pred echhhCCCCCCCEEEEEecChhhccCCH--HHHHHHHHHHhcC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666 6664 3999999999999875 6899999999999 355667654433210000000 000000000011
Q ss_pred CCc-----------eeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196 77 PSG-----------KKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK 115 (115)
Q Consensus 77 ~~g-----------~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~ 115 (115)
.+. .-.+.+++.++++++| ..++..... |..+++.++|
T Consensus 175 ~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 175 AKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 111 2347889999999974 666776665 5667777665
No 49
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.04 E-value=4.2e-06 Score=56.21 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=35.6
Q ss_pred CCCCC-CCC-c-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 2 DDMFQ-NVP-K-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 2 gd~~~-~~p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+|.++ +.+ . .|+|+++|||-+++++...+++++++++|+|||.|++-.
T Consensus 125 ~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 125 HNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp --TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred cccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 45666 222 2 399999999999999999999999999999999999844
No 50
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.03 E-value=2.9e-05 Score=55.74 Aligned_cols=98 Identities=10% Similarity=0.076 Sum_probs=54.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+|++..++||++++...++++++.+ +.+| +++|.. .+.........+....+.-. .. .......+.++++++
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~--~p~~~~~~~l~~~g~~~~g~-~~-~~r~y~~s~eel~~l 286 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIISF--APKTLYYDILKRIGELFPGP-SK-ATRAYLHAEADVERA 286 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEEe--CCcchHHHHHHHHHhhcCCC-Cc-CceeeeCCHHHHHHH
Confidence 499999999999999888888888875 4554 444422 22111000000000000000 00 001123479999999
Q ss_pred HHhCCCCeeEEEEcCCce---EEEEEE
Q 048196 91 ATGAGFSGTRFEWFTCNL---WVRDFY 114 (115)
Q Consensus 91 l~~aGf~~~~~~~~~~~~---~lie~~ 114 (115)
|+++||++.+..-....+ .+.|++
T Consensus 287 L~~AGf~v~~~~~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 287 LKKAGWKVARREMTATQFYFSRLLEAV 313 (315)
T ss_pred HHHCCCEEEEEEEeecceeHHhhhhhc
Confidence 999999987665444333 345543
No 51
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.02 E-value=3.8e-05 Score=52.02 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=55.4
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcc--cCCCceeCCHHHH
Q 048196 10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMT--QNPSGKKRTKHEF 87 (115)
Q Consensus 10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~g~~rt~~e~ 87 (115)
..|++++..+++++++++..++++++.+.+++++.+.+ .+.... ... ...+.-.... .......++.+++
T Consensus 119 ~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~----~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
T TIGR02021 119 EFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF----APKTAW---LAF-LKMIGELFPGSSRATSAYLHPMTDL 190 (219)
T ss_pred CcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE----CCCchH---HHH-HHHHHhhCcCcccccceEEecHHHH
Confidence 35999999999999988888999999988876533332 111111 000 0001000000 0012345689999
Q ss_pred HHHHHhCCCCeeEEEEcC
Q 048196 88 LTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 88 ~~ll~~aGf~~~~~~~~~ 105 (115)
.++++++||+++......
T Consensus 191 ~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 191 ERALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHHHcCceeeeeeccc
Confidence 999999999998876554
No 52
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.01 E-value=2.3e-05 Score=53.11 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=57.5
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS 78 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (115)
+|+.+ +.+. .|+|+...++|+.+|. .++|+++++.|+|||.+++.++...... . ...... ...
T Consensus 87 ~d~~~~~~~~~~fD~vi~~~~l~~~~~~--~~~l~~~~~~L~~~G~l~~~~~~~~~~~---~---~~~~~~------~~~ 152 (240)
T TIGR02072 87 GDAEKLPLEDSSFDLIVSNLALQWCDDL--SQALSELARVLKPGGLLAFSTFGPGTLH---E---LRQSFG------QHG 152 (240)
T ss_pred cchhhCCCCCCceeEEEEhhhhhhccCH--HHHHHHHHHHcCCCcEEEEEeCCccCHH---H---HHHHHH------Hhc
Confidence 45555 4443 4999999999988774 6899999999999999998764332211 0 000010 013
Q ss_pred ceeCCHHHHHHHHHhCCCCeeEE
Q 048196 79 GKKRTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~~~ 101 (115)
....+.++|.++++++ |....+
T Consensus 153 ~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 153 LRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred cCCCCHHHHHHHHHHh-cCCcEE
Confidence 3446788999999988 886654
No 53
>PRK06922 hypothetical protein; Provisional
Probab=98.00 E-value=1e-05 Score=62.73 Aligned_cols=45 Identities=27% Similarity=0.393 Sum_probs=39.3
Q ss_pred ccEEEeccccccC-----------ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 11 GDAIFMKWILHNW-----------SDDHCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 11 ~D~v~~~~vlh~~-----------~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
.|+|+++.++|+| ++++..++|++++++|+|||+++|.|.+.++.
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~ 543 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTED 543 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCc
Confidence 4999999999986 35678999999999999999999999766644
No 54
>PRK04266 fibrillarin; Provisional
Probab=98.00 E-value=5.4e-05 Score=51.90 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=48.3
Q ss_pred ccEEEeccccccCChH-HHHHHHHHHHhhCCCCCEEEEE-eeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHH
Q 048196 11 GDAIFMKWILHNWSDD-HCLKLLKIYYKSIPEDGKVIVV-ESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFL 88 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~lii~-d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~ 88 (115)
.|+++ |+.++. +...+|+++++.|+|||+++|. .. .+. |.. .... +..++..
T Consensus 142 ~D~i~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~----~~~-----------d~~-----~~~~-~~~~~~~ 195 (226)
T PRK04266 142 VDVIY-----QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKA----RSI-----------DVT-----KDPK-EIFKEEI 195 (226)
T ss_pred CCEEE-----ECCCChhHHHHHHHHHHHhcCCCcEEEEEEec----ccc-----------cCc-----CCHH-HHHHHHH
Confidence 48776 555543 3456789999999999999994 22 100 000 0001 2224556
Q ss_pred HHHHhCCCCeeEEEEcCCc---eEEEEE
Q 048196 89 TLATGAGFSGTRFEWFTCN---LWVRDF 113 (115)
Q Consensus 89 ~ll~~aGf~~~~~~~~~~~---~~lie~ 113 (115)
++++++||+.++.....+. +..+.+
T Consensus 196 ~~l~~aGF~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 196 RKLEEGGFEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred HHHHHcCCeEEEEEcCCCCcCCeEEEEE
Confidence 9999999999998877533 554444
No 55
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.96 E-value=7e-06 Score=48.73 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=24.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEE
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKV 45 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l 45 (115)
.|+|++.+++|++++ ...+|+++++.|+|||+|
T Consensus 67 fD~V~~~~vl~~l~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 67 FDLVVASNVLHHLED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -SEEEEE-TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred cceehhhhhHhhhhh--HHHHHHHHHHHcCCCCCC
Confidence 599999999999944 579999999999999986
No 56
>PRK06202 hypothetical protein; Provisional
Probab=97.90 E-value=3.9e-05 Score=52.43 Aligned_cols=87 Identities=20% Similarity=0.133 Sum_probs=55.4
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccc-hhcccCCC-----ceeCC
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDV-LMMTQNPS-----GKKRT 83 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l-~~~~~~~~-----g~~rt 83 (115)
.|+|+++.++||++|++..++|+++++.++ |.+++.|...+.. . ..... ....-. .... ..+ -+-+|
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~--~-~~~~~~~~~~~~~~~~~-~~d~~~s~~~~~~ 203 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL--A-YALFWAGTRLLSRSSFV-HTDGLLSVRRSYT 203 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH--H-HHHHHHHHHHhccCcee-eccchHHHHhhcC
Confidence 499999999999999888899999999987 5666666544321 0 00000 000000 0000 011 23568
Q ss_pred HHHHHHHHHhCCCCeeEEEEc
Q 048196 84 KHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~~~~~~~ 104 (115)
.+|+.+++++ ||++....+.
T Consensus 204 ~~el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 204 PAELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHHHHHhhC-CCeEEeccce
Confidence 9999999999 9998765443
No 57
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.90 E-value=2.3e-05 Score=47.22 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=37.7
Q ss_pred CCC-CC-CCC-cccEEEecc-ccccCCh-HHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 2 DDM-FQ-NVP-KGDAIFMKW-ILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 2 gd~-~~-~~p-~~D~v~~~~-vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+|+ +. +.+ +.|+|++.. .+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 59 ~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 59 GDAEFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SCCHGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 566 33 333 359999999 6775554 678999999999999999999865
No 58
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.90 E-value=0.0002 Score=48.87 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=58.1
Q ss_pred CCCCCCCC----cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCchhhhhchhccchhcccC
Q 048196 2 DDMFQNVP----KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP-ETSTVSKRNSQLDVLMMTQN 76 (115)
Q Consensus 2 gd~~~~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 76 (115)
||+++..+ ..|.++-+.++|+++.+...+.++++.++|+|||+++++-...++.. .++
T Consensus 104 ~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gP----------------- 166 (218)
T PRK13255 104 GDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGP----------------- 166 (218)
T ss_pred CcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCC-----------------
Confidence 67887322 23999999999999999999999999999999998666544443221 111
Q ss_pred CCceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196 77 PSGKKRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 77 ~~g~~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
-...|.+|+.++|.. +|++..+..
T Consensus 167 --p~~~~~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 167 --PFSVSDEEVEALYAG-CFEIELLER 190 (218)
T ss_pred --CCCCCHHHHHHHhcC-CceEEEeee
Confidence 013578999999953 266655443
No 59
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.88 E-value=3.4e-05 Score=54.16 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=41.9
Q ss_pred CCCCCCC--Cc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 2 DDMFQNV--PK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 2 gd~~~~~--p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+|.+++. ++ -|+|+++|||=+++.+...+++++.+++|+|||.|+|-.
T Consensus 191 ~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 191 HNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 5777733 34 399999999999999999999999999999999999944
No 60
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.88 E-value=0.0001 Score=49.96 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=60.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHH
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLA 91 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll 91 (115)
|+|+...+|.-..| .++.|+++++.|+|||+++++|.+..+-..-+.. .+...+-.--. ...|=..|.+.| +.|
T Consensus 147 DtVV~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i--~q~v~ep~~~~-~~dGC~ltrd~~-e~L 220 (252)
T KOG4300|consen 147 DTVVCTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHL-ESDGCVLTRDTG-ELL 220 (252)
T ss_pred eeEEEEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHHHHH--HHHHhchhhhe-eccceEEehhHH-HHh
Confidence 99999999987776 4899999999999999999999988765432110 01111110011 124544566555 566
Q ss_pred HhCCCCeeEEEEcCCc
Q 048196 92 TGAGFSGTRFEWFTCN 107 (115)
Q Consensus 92 ~~aGf~~~~~~~~~~~ 107 (115)
++|.|+..+.++.+.+
T Consensus 221 eda~f~~~~~kr~~~~ 236 (252)
T KOG4300|consen 221 EDAEFSIDSCKRFNFG 236 (252)
T ss_pred hhcccccchhhcccCC
Confidence 7799999988777533
No 61
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.87 E-value=2e-05 Score=52.83 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=52.3
Q ss_pred CCCCCCCc--ccEEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196 3 DMFQNVPK--GDAIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG 79 (115)
Q Consensus 3 d~~~~~p~--~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 79 (115)
|+-+..|. .|+|+++-|+|++++ ++...+++++.++|+|||.+++...... .. . .-|
T Consensus 97 dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~------~c----~----------~wg 156 (201)
T PF05401_consen 97 DVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA------NC----R----------RWG 156 (201)
T ss_dssp -TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH------HH----H----------HTT
T ss_pred cCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC------cc----c----------ccC
Confidence 33334554 399999999999986 6789999999999999999999775211 00 0 112
Q ss_pred eeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 80 KKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 80 ~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
.....+.+.++|++. |..++....
T Consensus 157 h~~ga~tv~~~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 157 HAAGAETVLEMLQEH-LTEVERVEC 180 (201)
T ss_dssp -S--HHHHHHHHHHH-SEEEEEEEE
T ss_pred cccchHHHHHHHHHH-hhheeEEEE
Confidence 233567888888876 565555544
No 62
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.86 E-value=0.00021 Score=50.64 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=65.2
Q ss_pred CcccEEEeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC-----ceeC
Q 048196 9 PKGDAIFMKWILHNWSDDH-CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS-----GKKR 82 (115)
Q Consensus 9 p~~D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----g~~r 82 (115)
|..++++.+-++-.++|.+ ....|+.+.+++.|||.+|..-.-..++ .+-.+..+ + .. .+ -+.|
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-----le~IAr~L--t--sH-r~g~~WvMRrR 277 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-----LEMIARVL--T--SH-RDGKAWVMRRR 277 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-----hHHHHHHH--h--cc-cCCCceEEEec
Confidence 3459999999999999966 5557999999999999997633222211 11111111 0 00 12 2679
Q ss_pred CHHHHHHHHHhCCCCeeEEEEc-CCceEEEEEEC
Q 048196 83 TKHEFLTLATGAGFSGTRFEWF-TCNLWVRDFYK 115 (115)
Q Consensus 83 t~~e~~~ll~~aGf~~~~~~~~-~~~~~lie~~~ 115 (115)
|..|..+|+++|||+.....-- .+.++|--|+|
T Consensus 278 sq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 278 SQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred CHHHHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 9999999999999997654332 36677776654
No 63
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.86 E-value=0.00014 Score=50.40 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=54.5
Q ss_pred CCCCCCCC--cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhh---hhc--hhccchhcc
Q 048196 2 DDMFQNVP--KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS---KRN--SQLDVLMMT 74 (115)
Q Consensus 2 gd~~~~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~---~~~--~~~~l~~~~ 74 (115)
+|+.+..+ +.|+++++.++|+.+|. .+++++++++|+|||++++. .++....+... ... ..+...+..
T Consensus 83 ~d~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 157 (258)
T PRK01683 83 ADIASWQPPQALDLIFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ---MPDNLDEPSHVLMREVAENGPWEQNLPD 157 (258)
T ss_pred CchhccCCCCCccEEEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEE---CCCCCCCHHHHHHHHHHccCchHHHhcc
Confidence 45544223 35999999999998875 68999999999999999884 22221111000 000 001111110
Q ss_pred c-CCCceeCCHHHHHHHHHhCCCCe
Q 048196 75 Q-NPSGKKRTKHEFLTLATGAGFSG 98 (115)
Q Consensus 75 ~-~~~g~~rt~~e~~~ll~~aGf~~ 98 (115)
. .......+..++.+++.++|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 158 RGARRAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred ccccCcCCCCHHHHHHHHHhCCCce
Confidence 0 00123357789999999999765
No 64
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.85 E-value=6.7e-05 Score=52.93 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=70.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|-|+.--+++|+..+.-...++++++.|+|||++++.....++.+... ...+..- -.+++|..+|..++.+.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~----~~~~i~~---yiFPgG~lPs~~~i~~~ 210 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRR----FPDFIDK---YIFPGGELPSISEILEL 210 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCccccc----chHHHHH---hCCCCCcCCCHHHHHHH
Confidence 5999999999999999999999999999999999999988777654311 1111111 12589999999999999
Q ss_pred HHhCCCCeeEEEEcC
Q 048196 91 ATGAGFSGTRFEWFT 105 (115)
Q Consensus 91 l~~aGf~~~~~~~~~ 105 (115)
.+++||.+..+...+
T Consensus 211 ~~~~~~~v~~~~~~~ 225 (283)
T COG2230 211 ASEAGFVVLDVESLR 225 (283)
T ss_pred HHhcCcEEehHhhhc
Confidence 999999988765543
No 65
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.84 E-value=0.00017 Score=48.84 Aligned_cols=89 Identities=11% Similarity=0.088 Sum_probs=54.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|++++..++|++++++...+++++.+.++++ .++.. .+..+...........+.- ..........+.++|.++
T Consensus 128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~-~~i~~---~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 201 (230)
T PRK07580 128 FDTVVCLDVLIHYPQEDAARMLAHLASLTRGS-LIFTF---APYTPLLALLHWIGGLFPG--PSRTTRIYPHREKGIRRA 201 (230)
T ss_pred cCEEEEcchhhcCCHHHHHHHHHHHHhhcCCe-EEEEE---CCccHHHHHHHHhccccCC--ccCCCCccccCHHHHHHH
Confidence 49999999999999999999999998866433 33332 1111100000000000000 000112344678999999
Q ss_pred HHhCCCCeeEEEEcC
Q 048196 91 ATGAGFSGTRFEWFT 105 (115)
Q Consensus 91 l~~aGf~~~~~~~~~ 105 (115)
++++||++.++.+..
T Consensus 202 l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 202 LAAAGFKVVRTERIS 216 (230)
T ss_pred HHHCCCceEeeeecc
Confidence 999999999887764
No 66
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.81 E-value=0.00011 Score=50.64 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=57.5
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS 78 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (115)
||+.+ +++. .|+|+.+.++|..+|. .++|+++++.|+|||.+++.......-++ ........+- . ...
T Consensus 92 ~d~~~~~~~~~~fD~V~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~e---l~~~~~~~~~--~--~~~ 162 (251)
T PRK10258 92 GDIESLPLATATFDLAWSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSLPE---LHQAWQAVDE--R--PHA 162 (251)
T ss_pred cCcccCcCCCCcEEEEEECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCchHH---HHHHHHHhcc--C--Ccc
Confidence 56655 5554 4999999999877764 68999999999999999997654432211 1110000110 0 012
Q ss_pred ceeCCHHHHHHHHHhCCCCe
Q 048196 79 GKKRTKHEFLTLATGAGFSG 98 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~ 98 (115)
..-.+.++|.+++..+|+..
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 163 NRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred ccCCCHHHHHHHHHhCCcee
Confidence 33468899999999988764
No 67
>PLN03075 nicotianamine synthase; Provisional
Probab=97.73 E-value=5.3e-05 Score=53.85 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCCCCCCC---cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196 2 DDMFQNVP---KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 2 gd~~~~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii 47 (115)
||..+..+ +.|+|++. ++|+|+.++..++|+++++.|+|||.+++
T Consensus 184 ~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 184 ADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred CchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 45555222 34999999 99999888899999999999999999988
No 68
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.70 E-value=7.6e-05 Score=49.98 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=53.3
Q ss_pred CCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196 3 DMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK 80 (115)
Q Consensus 3 d~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ 80 (115)
|+.+ .++. .|+|+...|+|+++.+...++++++.++++|||..++...+..++-..+ .. ...
T Consensus 85 Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~--------~~--------~~f 148 (192)
T PF03848_consen 85 DLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP--------SP--------FPF 148 (192)
T ss_dssp BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S--------S----------S-
T ss_pred cchhccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC--------CC--------CCc
Confidence 5555 4554 4999999999999999999999999999999999888666533221110 01 112
Q ss_pred eCCHHHHHHHHHhCCCCeeE
Q 048196 81 KRTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 81 ~rt~~e~~~ll~~aGf~~~~ 100 (115)
.....|+.+.+ +||++++
T Consensus 149 ~~~~~EL~~~y--~dW~il~ 166 (192)
T PF03848_consen 149 LLKPGELREYY--ADWEILK 166 (192)
T ss_dssp -B-TTHHHHHT--TTSEEEE
T ss_pred ccCHHHHHHHh--CCCeEEE
Confidence 24567899998 4787765
No 69
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.54 E-value=4.1e-05 Score=45.65 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=33.5
Q ss_pred CCCCC-CCC--cccEEEec-cccccCChHHHHHHHHHHHhhCCCCC
Q 048196 2 DDMFQ-NVP--KGDAIFMK-WILHNWSDDHCLKLLKIYYKSIPEDG 43 (115)
Q Consensus 2 gd~~~-~~p--~~D~v~~~-~vlh~~~d~~~~~iL~~~~~aL~pgg 43 (115)
+|+.+ +++ +.|+|+++ .++|++++++..++++++.+.|+|||
T Consensus 56 ~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 56 ADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 45545 333 24999995 55999999999999999999999987
No 70
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.53 E-value=0.00051 Score=46.58 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=57.4
Q ss_pred CCCCC-CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196 2 DDMFQ-NVPKG--DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS 78 (115)
Q Consensus 2 gd~~~-~~p~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (115)
-|+-. |++.. |+++++-.|..-+ ....|+++.+.|+|||.|.|.|.... +
T Consensus 111 cdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~SR----------f-------------- 163 (219)
T PF05148_consen 111 CDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVKSR----------F-------------- 163 (219)
T ss_dssp S-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------------
T ss_pred ecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEeccc----------C--------------
Confidence 36655 66653 9999888885433 47899999999999999999884321 1
Q ss_pred ceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196 79 GKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~ 115 (115)
-..+++.+.++..||+...-......+.+++.+|
T Consensus 164 ---~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 164 ---ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp ---S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred ---cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 1347889999999999987665567888888775
No 71
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.51 E-value=0.00055 Score=47.00 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=45.0
Q ss_pred CCCCC-CC-C----cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 2 DDMFQ-NV-P----KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 2 gd~~~-~~-p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
||||+ +. + ..|+|+=+.+++.++++...+..+++.+.|+|||+++++-.-.+
T Consensus 110 gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 110 ADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred ccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 89999 42 2 24999999999999999999999999999999999999876444
No 72
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.47 E-value=0.00028 Score=48.64 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=58.4
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhh-hchhccchhcccCCCc-----eeCCH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSK-RNSQLDVLMMTQNPSG-----KKRTK 84 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~g-----~~rt~ 84 (115)
.|+|++-.|++|.+|++ .++++|.+.+||||.+++........ +.... ....+=+. + .+.| +...+
T Consensus 125 FDvV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STinrt~k---a~~~~i~~ae~vl~-~--vP~gTH~~~k~irp 196 (243)
T COG2227 125 FDVVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLSTINRTLK---AYLLAIIGAEYVLR-I--VPKGTHDYRKFIKP 196 (243)
T ss_pred ccEEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccccCHH---HHHHHHHHHHHHHH-h--cCCcchhHHHhcCH
Confidence 49999999999999985 59999999999999999876552211 11000 00101111 1 2333 45578
Q ss_pred HHHHHHHHhCCCCeeEEEEc
Q 048196 85 HEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~~~~~ 104 (115)
+|...++.++|+.......+
T Consensus 197 ~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 197 AELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred HHHHHhcccCCceEEeecce
Confidence 89999999999988766544
No 73
>PTZ00146 fibrillarin; Provisional
Probab=97.37 E-value=0.0045 Score=44.07 Aligned_cols=79 Identities=11% Similarity=-0.098 Sum_probs=47.9
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+|++... .+ ++...++.++++.|+|||.++|.-.....+... .-.++-.+|. ++
T Consensus 203 vDvV~~Dva---~p-dq~~il~~na~r~LKpGG~~vI~ika~~id~g~-------------------~pe~~f~~ev-~~ 258 (293)
T PTZ00146 203 VDVIFADVA---QP-DQARIVALNAQYFLKNGGHFIISIKANCIDSTA-------------------KPEVVFASEV-QK 258 (293)
T ss_pred CCEEEEeCC---Cc-chHHHHHHHHHHhccCCCEEEEEEeccccccCC-------------------CHHHHHHHHH-HH
Confidence 599987663 12 345677788999999999999931111111000 1111111455 88
Q ss_pred HHhCCCCeeEEEEcCC---ceEEEEE
Q 048196 91 ATGAGFSGTRFEWFTC---NLWVRDF 113 (115)
Q Consensus 91 l~~aGf~~~~~~~~~~---~~~lie~ 113 (115)
|+++||+.++.+.+.+ .++++.+
T Consensus 259 L~~~GF~~~e~v~L~Py~~~h~~v~~ 284 (293)
T PTZ00146 259 LKKEGLKPKEQLTLEPFERDHAVVIG 284 (293)
T ss_pred HHHcCCceEEEEecCCccCCcEEEEE
Confidence 9999999998887753 4455443
No 74
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.36 E-value=0.00076 Score=45.50 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=41.2
Q ss_pred CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196 2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE 54 (115)
Q Consensus 2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~ 54 (115)
||++++.+. .|+|++..++||+++++..++++++++.+ ++.++|.|...+.
T Consensus 95 ~d~~~~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 95 GSLFDPFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred eeccCCCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 566665553 49999999999999888999999999986 6688888875543
No 75
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.36 E-value=0.00066 Score=46.35 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=56.4
Q ss_pred CCCCC-CCCc---ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCchhhhhchhccchhcccC
Q 048196 2 DDMFQ-NVPK---GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP-ETSTVSKRNSQLDVLMMTQN 76 (115)
Q Consensus 2 gd~~~-~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 76 (115)
||||+ +-.. .|+|+=+.+|+-++.+...+-.+++.+.|+|||+++++-...+... .+|+
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP---------------- 167 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP---------------- 167 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----------------
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC----------------
Confidence 79999 3222 3999999999999999999999999999999999554443333221 1221
Q ss_pred CCceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196 77 PSGKKRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 77 ~~g~~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
..-+.+|+.++|. .+|++.....
T Consensus 168 ---f~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 168 ---FSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp -------HHHHHHHHT-TTEEEEEEEE
T ss_pred ---CCCCHHHHHHHhc-CCcEEEEEec
Confidence 0135789999998 7888766543
No 76
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.33 E-value=0.00026 Score=49.46 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=59.2
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc-----eeCCH
Q 048196 10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG-----KKRTK 84 (115)
Q Consensus 10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-----~~rt~ 84 (115)
..|+|+++.|++|..|. ..+++.+.+.|+|||+++|......-..--. ...++=..+...+.| +--++
T Consensus 158 ~fDaVvcsevleHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~~~-----~i~~~E~vl~ivp~Gth~~ekfi~p 230 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSFAG-----TIFLAEIVLRIVPKGTHTWEKFINP 230 (282)
T ss_pred ccceeeeHHHHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHhhc-----cccHHHHHHHhcCCCCcCHHHcCCH
Confidence 35999999999999886 7999999999999999999775433221000 011111111111233 45689
Q ss_pred HHHHHHHHhCCCCeeEEE
Q 048196 85 HEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~~~ 102 (115)
+|..+++..+++.+..+.
T Consensus 231 ~e~~~~l~~~~~~v~~v~ 248 (282)
T KOG1270|consen 231 EELTSILNANGAQVNDVV 248 (282)
T ss_pred HHHHHHHHhcCcchhhhh
Confidence 999999999998887654
No 77
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.28 E-value=0.0029 Score=44.42 Aligned_cols=83 Identities=16% Similarity=0.100 Sum_probs=59.3
Q ss_pred CCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196 3 DMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG 79 (115)
Q Consensus 3 d~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 79 (115)
||-+ |++. .|+++++..|..-+ ....++++++.|+|||.++|.|.-.. +
T Consensus 218 Dm~~vPl~d~svDvaV~CLSLMgtn---~~df~kEa~RiLk~gG~l~IAEv~SR----------f--------------- 269 (325)
T KOG3045|consen 218 DMRNVPLEDESVDVAVFCLSLMGTN---LADFIKEANRILKPGGLLYIAEVKSR----------F--------------- 269 (325)
T ss_pred cccCCcCccCcccEEEeeHhhhccc---HHHHHHHHHHHhccCceEEEEehhhh----------c---------------
Confidence 6666 6664 49888776664322 46789999999999999999874211 1
Q ss_pred eeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196 80 KKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115 (115)
Q Consensus 80 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~ 115 (115)
-+..++.+-|...||.+....-....+.++|+.|
T Consensus 270 --~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 270 --SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred --ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 1123588888999999877665567888888765
No 78
>PRK14968 putative methyltransferase; Provisional
Probab=97.16 E-value=0.012 Score=38.37 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=53.2
Q ss_pred CCCCCCCCc--ccEEEeccccccCC-------------------hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch
Q 048196 2 DDMFQNVPK--GDAIFMKWILHNWS-------------------DDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST 60 (115)
Q Consensus 2 gd~~~~~p~--~D~v~~~~vlh~~~-------------------d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~ 60 (115)
+|+.+++++ .|++++...+...+ ......+++++.+.|+|||.+++... ..
T Consensus 80 ~d~~~~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~---~~----- 151 (188)
T PRK14968 80 SDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS---SL----- 151 (188)
T ss_pred ccccccccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc---cc-----
Confidence 566665543 49988765433211 12246789999999999999887531 00
Q ss_pred hhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC---CceEEEEEEC
Q 048196 61 VSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT---CNLWVRDFYK 115 (115)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~---~~~~lie~~~ 115 (115)
...+++.++++++||+...+.... ....+++++|
T Consensus 152 ---------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 ---------------------TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred ---------------------CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 123578889999999887664442 3344555543
No 79
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.14 E-value=0.00052 Score=47.93 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=55.7
Q ss_pred CCc-ccEEEeccccccCC--hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCH
Q 048196 8 VPK-GDAIFMKWILHNWS--DDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTK 84 (115)
Q Consensus 8 ~p~-~D~v~~~~vlh~~~--d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~ 84 (115)
+|+ +|++++..+|-... .++-.+.++|+...|||||.|+++...-... +. .....+ ..-.-+.
T Consensus 155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-----Y~--vG~~~F-------~~l~l~e 220 (256)
T PF01234_consen 155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-----YM--VGGHKF-------PCLPLNE 220 (256)
T ss_dssp S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE-----EE--ETTEEE-------E---B-H
T ss_pred CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee-----EE--ECCEec-------ccccCCH
Confidence 454 79999999998655 4668999999999999999999987633211 00 000001 1112468
Q ss_pred HHHHHHHHhCCCCeeEEEE
Q 048196 85 HEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~~~~ 103 (115)
+.+++-|+++||.+.+...
T Consensus 221 e~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 221 EFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp HHHHHHHHHTTEEEEEEEG
T ss_pred HHHHHHHHHcCCEEEeccc
Confidence 8999999999999888764
No 80
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.11 E-value=0.0028 Score=44.30 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=52.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC------CCC--CCchhhhhchhccchhcccCCCceeC
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP------ELP--ETSTVSKRNSQLDVLMMTQNPSGKKR 82 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~------~~~--~~~~~~~~~~~~~l~~~~~~~~g~~r 82 (115)
.|+|.+.|+|..-.++ ..+|+.++++|+|+|++++.=. +| ..+ ..++.+. ++ ..+..-+-
T Consensus 152 fDvIscLNvLDRc~~P--~~LL~~i~~~l~p~G~lilAvV-lP~~pyVE~~~g~~~~P~e~----l~-----~~g~~~E~ 219 (265)
T PF05219_consen 152 FDVISCLNVLDRCDRP--LTLLRDIRRALKPNGRLILAVV-LPFRPYVEFGGGKSNRPSEL----LP-----VKGATFEE 219 (265)
T ss_pred eEEEeehhhhhccCCH--HHHHHHHHHHhCCCCEEEEEEE-ecccccEEcCCCCCCCchhh----cC-----CCCCcHHH
Confidence 4999999999877665 8999999999999999988543 22 111 0011110 11 11111122
Q ss_pred CHHHHHHHHHhCCCCeeEEEEcC
Q 048196 83 TKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 83 t~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
..+.+.+.|+.+||++.+....+
T Consensus 220 ~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 220 QVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHHhcCCEEEEEeccC
Confidence 22344478899999999887664
No 81
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.11 E-value=0.004 Score=41.99 Aligned_cols=79 Identities=13% Similarity=0.028 Sum_probs=54.2
Q ss_pred ccEEEeccccccC-----ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHH
Q 048196 11 GDAIFMKWILHNW-----SDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKH 85 (115)
Q Consensus 11 ~D~v~~~~vlh~~-----~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~ 85 (115)
.|+++.....|++ ....+.++-+.++++|||||.++|.|........... + +. -++ ++.+
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d-----t--~~-------~~r-i~~a 187 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD-----T--IT-------LHR-IDPA 187 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh-----h--hh-------hcc-cChH
Confidence 3888776555543 3456889999999999999999999998776532210 0 00 111 3467
Q ss_pred HHHHHHHhCCCCeeEEEEc
Q 048196 86 EFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 86 e~~~ll~~aGf~~~~~~~~ 104 (115)
-..+-.+.+||+..-...+
T Consensus 188 ~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 188 VVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHHhhcceeeeeehh
Confidence 7888888999998755444
No 82
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.10 E-value=0.0034 Score=41.46 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=45.4
Q ss_pred CCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196 2 DDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK 80 (115)
Q Consensus 2 gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ 80 (115)
||...+++. .|++++....+++ ..+++.+.+.|+|||++++.....
T Consensus 88 ~d~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~---------------------------- 134 (187)
T PRK08287 88 GEAPIELPGKADAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILL---------------------------- 134 (187)
T ss_pred cCchhhcCcCCCEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecH----------------------------
Confidence 343333443 5999987665433 468899999999999998843211
Q ss_pred eCCHHHHHHHHHhCCCCeeEEEE
Q 048196 81 KRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 81 ~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
-+.+++.++++++||+.++++.
T Consensus 135 -~~~~~~~~~l~~~g~~~~~~~~ 156 (187)
T PRK08287 135 -ENLHSALAHLEKCGVSELDCVQ 156 (187)
T ss_pred -hhHHHHHHHHHHCCCCcceEEE
Confidence 0135777888889988766543
No 83
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.08 E-value=0.0035 Score=42.89 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=34.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
..+++++.+.|+|||.+++.- . . ...+++.++|+++||+.+++...
T Consensus 197 ~~~i~~~~~~L~~gG~~~~~~-----~--------------------~-----~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 197 RRIIAQAPRLLKPGGWLLLEI-----G--------------------Y-----DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred HHHHHHHHHhcccCCEEEEEE-----C--------------------c-----cHHHHHHHHHHhCCCCceEEEeC
Confidence 478899999999999988721 0 0 12367899999999998877654
No 84
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.91 E-value=0.0084 Score=42.26 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=59.0
Q ss_pred CCCCCC--CCC--c-c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcc
Q 048196 1 MDDMFQ--NVP--K-G-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMT 74 (115)
Q Consensus 1 ~gd~~~--~~p--~-~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (115)
+|||.+ +-+ + . |+|+.++.+.- -+....-|..|...|||||..|-.-++.-.... .. .
T Consensus 150 aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~------------~~--~ 213 (270)
T PF07942_consen 150 AGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFEP------------MS--I 213 (270)
T ss_pred cCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCCC------------CC--C
Confidence 589998 233 1 3 99998866632 234788999999999999976655444332211 00 0
Q ss_pred cCCCceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196 75 QNPSGKKRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 75 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
....+-+.|.+|+.++.+..||+.++...
T Consensus 214 ~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 214 PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 01234677899999999999999986544
No 85
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.70 E-value=0.0063 Score=40.44 Aligned_cols=88 Identities=13% Similarity=0.009 Sum_probs=48.9
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc-hhh--h--hchhccchhcccCCCceeCCHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS-TVS--K--RNSQLDVLMMTQNPSGKKRTKH 85 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~-~~~--~--~~~~~~l~~~~~~~~g~~rt~~ 85 (115)
.|+|++..++|+++|. .++|+++.+.++ .+++.-+......... ... . ....+..... ..++.+..|.+
T Consensus 76 fD~Vi~~~~l~~~~d~--~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~ 149 (194)
T TIGR02081 76 FDYVILSQTLQATRNP--EEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWY-NTPNIHFCTIA 149 (194)
T ss_pred cCEEEEhhHhHcCcCH--HHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCcccc-CCCCcccCcHH
Confidence 4999999999999874 577888777644 4444211100000000 000 0 0000000000 01234567899
Q ss_pred HHHHHHHhCCCCeeEEEEc
Q 048196 86 EFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 86 e~~~ll~~aGf~~~~~~~~ 104 (115)
++.++++++||++++....
T Consensus 150 ~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 150 DFEDLCGELNLRILDRAAF 168 (194)
T ss_pred HHHHHHHHCCCEEEEEEEe
Confidence 9999999999999886554
No 86
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.69 E-value=0.0053 Score=44.64 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=38.2
Q ss_pred CCCCCCCCc-ccEEEeccccccC---ChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 2 DDMFQNVPK-GDAIFMKWILHNW---SDDHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 2 gd~~~~~p~-~D~v~~~~vlh~~---~d~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
+|.++..+. .|+|++.-.+|+. +.+...++++++.+.|+|||+++|+-.
T Consensus 252 ~D~~~~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 252 SNVFSDIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cccccccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 456654444 4999999999864 345578999999999999999998543
No 87
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.69 E-value=0.0033 Score=43.73 Aligned_cols=90 Identities=21% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCCC-CCCcccEEEecc----ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196 3 DMFQ-NVPKGDAIFMKW----ILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP 77 (115)
Q Consensus 3 d~~~-~~p~~D~v~~~~----vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (115)
||++ ..|+.|++++-. |=-+|.|+-..++++++++-|.|||.+++ | | ++=.. +...+. -..-+..+.
T Consensus 158 dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-E---P-QpWks-Y~kaar--~~e~~~~ny 229 (288)
T KOG2899|consen 158 DFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-E---P-QPWKS-YKKAAR--RSEKLAANY 229 (288)
T ss_pred hhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-c---C-CchHH-HHHHHH--HHHHhhcCc
Confidence 5665 456678887654 44489999999999999999999999976 2 1 11111 111011 111111122
Q ss_pred CceeCCHHHHHHHHHhC--CCCeeE
Q 048196 78 SGKKRTKHEFLTLATGA--GFSGTR 100 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~a--Gf~~~~ 100 (115)
.--...++.+..|+.+. ||+.++
T Consensus 230 ~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 230 FKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred cceecCHHHHHhhhhhhhhheeeec
Confidence 33345788899999987 565543
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.63 E-value=0.0068 Score=34.66 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=32.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|++++...++++ .+....+++++.+.|+|||.+++.
T Consensus 67 ~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 5999999999886 556799999999999999999875
No 89
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.50 E-value=0.001 Score=40.55 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=43.7
Q ss_pred cEEEecccc---c-cCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHH
Q 048196 12 DAIFMKWIL---H-NWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEF 87 (115)
Q Consensus 12 D~v~~~~vl---h-~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~ 87 (115)
|+|++..|. | +|.|+....+++++++.|+|||.+++ |+ ++-.. +.+. ....-.+.. +...-...++++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-Ep----Q~w~s-Y~~~-~~~~~~~~~-n~~~i~lrP~~F 74 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EP----QPWKS-YKKA-KRLSEEIRE-NYKSIKLRPDQF 74 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E-------HHH-HHTT-TTS-HHHHH-HHHH----GGGH
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eC----CCcHH-HHHH-hhhhHHHHh-HHhceEEChHHH
Confidence 667666543 2 78899999999999999999999976 32 11000 0000 000000000 011222345678
Q ss_pred HHHHHh--CCCCeeEEEEc
Q 048196 88 LTLATG--AGFSGTRFEWF 104 (115)
Q Consensus 88 ~~ll~~--aGf~~~~~~~~ 104 (115)
..+|.+ .||...+....
T Consensus 75 ~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 75 EDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHTSTTT---EEEEE--
T ss_pred HHHHHhcccceEEEEEccc
Confidence 888887 59998875544
No 90
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.41 E-value=0.056 Score=37.58 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEE-cCC
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEW-FTC 106 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~ 106 (115)
..++++++.+.|+|||.+++ +. . . ...+++.+++++.||..+++.. ..+
T Consensus 217 ~~~~~~~~~~~Lk~gG~l~~-e~----g-~------------------------~~~~~~~~~l~~~gf~~v~~~~d~~~ 266 (275)
T PRK09328 217 YRRIIEQAPRYLKPGGWLLL-EI----G-Y------------------------DQGEAVRALLAAAGFADVETRKDLAG 266 (275)
T ss_pred HHHHHHHHHHhcccCCEEEE-EE----C-c------------------------hHHHHHHHHHHhCCCceeEEecCCCC
Confidence 46788999999999999987 11 0 0 1135688999999998766643 345
Q ss_pred ceEEEEEE
Q 048196 107 NLWVRDFY 114 (115)
Q Consensus 107 ~~~lie~~ 114 (115)
.-.++-++
T Consensus 267 ~~r~~~~~ 274 (275)
T PRK09328 267 RDRVVLGR 274 (275)
T ss_pred CceEEEEE
Confidence 55555444
No 91
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.41 E-value=0.049 Score=37.72 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=46.9
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+++.... .+....+++++.+.|+|||++++...... ..+++.+.
T Consensus 180 fD~Vvani~-----~~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~ 225 (250)
T PRK00517 180 ADVIVANIL-----ANPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEA 225 (250)
T ss_pred cCEEEEcCc-----HHHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHH
Confidence 488875422 23356889999999999999998642211 23678889
Q ss_pred HHhCCCCeeEEEEcCCceEEE
Q 048196 91 ATGAGFSGTRFEWFTCNLWVR 111 (115)
Q Consensus 91 l~~aGf~~~~~~~~~~~~~li 111 (115)
+++.||+..++...+.-.+++
T Consensus 226 l~~~Gf~~~~~~~~~~W~~~~ 246 (250)
T PRK00517 226 YEEAGFTLDEVLERGEWVALV 246 (250)
T ss_pred HHHCCCEEEEEEEeCCEEEEE
Confidence 999999998877665444443
No 92
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.33 E-value=0.013 Score=43.24 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=37.4
Q ss_pred CCCCCCCCc--ccEEEeccccc---cCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 2 DDMFQNVPK--GDAIFMKWILH---NWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 2 gd~~~~~p~--~D~v~~~~vlh---~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+|.++.++. .|+|++.--+| .++++.+.++++.+++.|+|||+++++-
T Consensus 288 ~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 288 NNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 466665543 59999975554 4667778899999999999999999973
No 93
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.0016 Score=42.27 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=36.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
+|+++..+|+-|+.-++-...++.|++-|+|||.|-|.
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 59999999999999999999999999999999999884
No 94
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.13 E-value=0.016 Score=39.75 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=65.9
Q ss_pred CCCCCCCC--cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc--hhhhhch---hccchhcc
Q 048196 2 DDMFQNVP--KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS--TVSKRNS---QLDVLMMT 74 (115)
Q Consensus 2 gd~~~~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~--~~~~~~~---~~~l~~~~ 74 (115)
||.-+-.| +.|+++...+||-.+|. .++|.+....|.|||.|.+. +++....+ ...+... -+.-.+--
T Consensus 82 aDl~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQ---mPdN~depsH~~mr~~A~~~p~~~~l~~ 156 (257)
T COG4106 82 ADLRTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQ---MPDNLDEPSHRLMRETADEAPFAQELGG 156 (257)
T ss_pred ccHhhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEE---CCCccCchhHHHHHHHHhcCchhhhhCc
Confidence 45545345 35999999999999987 79999999999999999883 34332221 1111000 01111110
Q ss_pred c-CCCceeCCHHHHHHHHHhCCCCeeEEE------EcCCceEEEEEEC
Q 048196 75 Q-NPSGKKRTKHEFLTLATGAGFSGTRFE------WFTCNLWVRDFYK 115 (115)
Q Consensus 75 ~-~~~g~~rt~~e~~~ll~~aGf~~~~~~------~~~~~~~lie~~~ 115 (115)
. ...+..-+.+.|-++|...+-+ +.+. ++.+..+|||.+|
T Consensus 157 ~~~~r~~v~s~a~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 157 RGLTRAPLPSPAAYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred cccccCCCCCHHHHHHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence 0 0123345889999999877733 3332 3357778888765
No 95
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.07 E-value=0.058 Score=38.97 Aligned_cols=89 Identities=16% Similarity=0.286 Sum_probs=62.2
Q ss_pred CCCCCC--CCCc---c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcc
Q 048196 1 MDDMFQ--NVPK---G-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMT 74 (115)
Q Consensus 1 ~gd~~~--~~p~---~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (115)
+|||.+ +.++ . |+|..++.+. +......-|+.|.+.|+|||..+-.-+.+-.-...+ +.
T Consensus 244 aGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~---------g~---- 308 (369)
T KOG2798|consen 244 AGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH---------GV---- 308 (369)
T ss_pred ccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC---------CC----
Confidence 599998 4444 2 9999886663 234478889999999999999987766544321110 00
Q ss_pred cCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 75 QNPSGKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 75 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
....+-+.|.+++..+.+.-||++.+...+
T Consensus 309 ~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 309 ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 012356788999999999999999876544
No 96
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.04 E-value=0.012 Score=42.66 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=32.7
Q ss_pred CcccEEEecccccc-C-ChHHHHHHHHHHHhhCCCCCEEEE
Q 048196 9 PKGDAIFMKWILHN-W-SDDHCLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 9 p~~D~v~~~~vlh~-~-~d~~~~~iL~~~~~aL~pgg~lii 47 (115)
|..|++-+..++|+ | +.+.++.+|+|+.+.|+|||.+|=
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 34699999999995 3 456699999999999999998864
No 97
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.88 E-value=0.017 Score=37.62 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=35.5
Q ss_pred CCCCCCCC-c-ccEEEeccccccCCh---HHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 2 DDMFQNVP-K-GDAIFMKWILHNWSD---DHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 2 gd~~~~~p-~-~D~v~~~~vlh~~~d---~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+|.+++++ . .|+|++.--+|.-.+ +-..++++.+.+.|+|||+++++-
T Consensus 88 ~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 88 SDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp SSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 57788666 3 499999877776655 347899999999999999997743
No 98
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.80 E-value=0.04 Score=37.28 Aligned_cols=41 Identities=7% Similarity=-0.015 Sum_probs=30.4
Q ss_pred ccEEEeccccccCChHH---------HHHHHHHHHhhCCCCCEEEEEeee
Q 048196 11 GDAIFMKWILHNWSDDH---------CLKLLKIYYKSIPEDGKVIVVESI 51 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~---------~~~iL~~~~~aL~pgg~lii~d~~ 51 (115)
.|+|+...+.|...+.. ...+|+.+.+.|+|||.+++..+.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 49999876665543321 256899999999999999996543
No 99
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.61 E-value=0.06 Score=35.63 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=24.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|+|++.. +|++ ..+++.+++.|+|||++++.
T Consensus 110 fD~I~s~~-~~~~-----~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 110 FDVITSRA-LASL-----NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccEEEehh-hhCH-----HHHHHHHHHhcCCCCEEEEE
Confidence 59988765 5543 35778889999999999875
No 100
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.38 E-value=0.04 Score=39.81 Aligned_cols=42 Identities=7% Similarity=0.230 Sum_probs=35.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHh-hCCCCCEEEE-EeeecC
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYK-SIPEDGKVIV-VESILP 53 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~-aL~pgg~lii-~d~~~~ 53 (115)
-++++.+.+.+++++++..+|+++++ .|+||+.++| +|.+.+
T Consensus 159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKD 202 (319)
T ss_pred EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 56667789999999999999999999 9999998888 555443
No 101
>PRK14967 putative methyltransferase; Provisional
Probab=95.34 E-value=0.28 Score=33.28 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeec
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
...+++++.+.|+|||+++++..-.
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4568889999999999999865443
No 102
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.21 E-value=0.03 Score=33.84 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=26.6
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|++++....+ ...++++++++.|+|||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 59998876443 3458999999999999999874
No 103
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=94.95 E-value=0.029 Score=40.73 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=32.1
Q ss_pred cEEEeccccccC--ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 12 DAIFMKWILHNW--SDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 12 D~v~~~~vlh~~--~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
|+|-+...+|+. +.+.+..+|+++.+.|+|||.+|..=
T Consensus 147 DvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 147 DVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp EEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999999999954 45668889999999999999998754
No 104
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.81 E-value=0.039 Score=40.81 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=38.7
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE 54 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~ 54 (115)
|.+.++.+..-+++++..+..+.+.++++|||+++.-....+.
T Consensus 297 ~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 297 DRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred eEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 9999999999999999999999999999999999986655443
No 105
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.45 E-value=0.075 Score=35.71 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=29.0
Q ss_pred CCCCCCCC---cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 2 DDMFQNVP---KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 2 gd~~~~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
||+.+.++ ..|+|++...++++++ ++.+.|+|||++++.
T Consensus 131 ~d~~~~~~~~~~fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 131 GDGKRGLEKHAPFDAIIVTAAASTIPS--------ALVRQLKDGGVLVIP 172 (205)
T ss_pred CCcccCCccCCCccEEEEccCcchhhH--------HHHHhcCcCcEEEEE
Confidence 56666444 2499999998876663 466789999999874
No 106
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.41 E-value=0.042 Score=40.41 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=37.1
Q ss_pred CCCcccEEEeccccccCChHHHHH----HHHHHHhhCCCCCEEEEEeeecC
Q 048196 7 NVPKGDAIFMKWILHNWSDDHCLK----LLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 7 ~~p~~D~v~~~~vlh~~~d~~~~~----iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
++|.+|.|.+..++|.+-.+...+ .++++...+.|||.|+|+|.-.+
T Consensus 179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 466779999888888766555444 88999999999999999986544
No 107
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.24 E-value=0.37 Score=33.80 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=53.0
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-hhhhch--h--ccchhcccCCCceeCCHHH
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST-VSKRNS--Q--LDVLMMTQNPSGKKRTKHE 86 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~-~~~~~~--~--~~l~~~~~~~~g~~rt~~e 86 (115)
-++++--++.+++.++..++|+.+.+...||+.++ .|.+.+-...... ..+... . .+..-+ ..+ .+.++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~ 233 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDGEWRAGMRAPVYHAARGVDGSGL---VFG--IDRAD 233 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccchhHHHHHHHHHHHhhhccccccc---ccC--CChhh
Confidence 46677789999999999999999999887888775 5665441111100 000000 0 111111 112 35789
Q ss_pred HHHHHHhCCCCeeEE
Q 048196 87 FLTLATGAGFSGTRF 101 (115)
Q Consensus 87 ~~~ll~~aGf~~~~~ 101 (115)
+.++|++.||+....
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999988654
No 108
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.20 E-value=0.1 Score=35.31 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=27.8
Q ss_pred CCCCCCCC-c--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 2 DDMFQNVP-K--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 2 gd~~~~~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
||.++..+ . .|+|++....++.+ +.+.+.|+|||++++.
T Consensus 134 gd~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 134 GDGTLGYEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcccCCCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 67666433 2 49999988776554 3456689999999884
No 109
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.03 E-value=0.062 Score=38.17 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=38.4
Q ss_pred CCCC-CCCc--ccEEEeccccccCChH-HHHHHHHHHHhhCCCCCEEEEEee
Q 048196 3 DMFQ-NVPK--GDAIFMKWILHNWSDD-HCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 3 d~~~-~~p~--~D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
|... |.+. .|..+...++|||+-. ...++++++.+.|+|||...|.=.
T Consensus 93 d~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 93 DALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4555 4443 4999999999999964 478899999999999999777543
No 110
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=93.85 E-value=0.095 Score=35.17 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=27.6
Q ss_pred ccEEEeccccccC------ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 11 GDAIFMKWILHNW------SDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 11 ~D~v~~~~vlh~~------~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
.|++++....+.. .......+|+++++.|+|||.+++..
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 4988876544211 11124689999999999999999853
No 111
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.60 E-value=0.1 Score=35.40 Aligned_cols=52 Identities=15% Similarity=0.311 Sum_probs=30.6
Q ss_pred CCCCCC-CC-----CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 1 MDDMFQ-NV-----PKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 1 ~gd~~~-~~-----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
.|||++ +. .+||+|++.+.+ |+++-..++ ++....||+|.++|-.....+..
T Consensus 107 ~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 107 HGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLAL-AELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp CS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT-EEEESS-SS-TT
T ss_pred ccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCCCEEEECCCcCCCC
Confidence 378888 32 347999999886 776655555 66667899999998776666654
No 112
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=93.13 E-value=0.11 Score=36.37 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=27.2
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+|..+ |++. .|+|+.... ...++++++.|+|||+++++.
T Consensus 140 ~d~~~lp~~~~sfD~I~~~~~---------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 140 ASSHRLPFADQSLDAIIRIYA---------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred eecccCCCcCCceeEEEEecC---------CCCHHHHHhhccCCCEEEEEe
Confidence 45555 5554 499986543 123578889999999999865
No 113
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=92.98 E-value=0.32 Score=35.05 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=31.9
Q ss_pred CCCCC-CCCc--ccEEEecccc-------ccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 2 DDMFQ-NVPK--GDAIFMKWIL-------HNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vl-------h~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
+|+.+ +.+. .|++++.--. .+...+-..++|+++++.|+|||++++.
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 57766 5543 4999884211 1122233578999999999999999884
No 114
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.90 E-value=0.68 Score=33.19 Aligned_cols=88 Identities=14% Similarity=-0.006 Sum_probs=53.6
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCC---chhhhhchhccchhcccCCCceeCCHHHHH
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPET---STVSKRNSQLDVLMMTQNPSGKKRTKHEFL 88 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~ 88 (115)
=+.++-.++-+++.++..++|.+|....+||+.++..-......... ..........++...- ..-......|++
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~e~~ 249 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGE--LVYFGDDPAEIE 249 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccc--ceeccCCHHHHH
Confidence 36777789999999999999999999999998887654311111111 0000000000111000 011124578999
Q ss_pred HHHHhCCCCeeEE
Q 048196 89 TLATGAGFSGTRF 101 (115)
Q Consensus 89 ~ll~~aGf~~~~~ 101 (115)
.++.+.||.....
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999987765
No 115
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=92.85 E-value=0.22 Score=35.14 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=37.0
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
..|+|+++++|-.+++++...+++++.+.+.+ .|+|+|.-.+..
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 45999999999999998899999999887766 899988765543
No 116
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.59 E-value=0.27 Score=32.98 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=28.4
Q ss_pred CCCCCCCCc---ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 2 DDMFQNVPK---GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 2 gd~~~~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
||..+.++. .|+|++...++++ .+++.+.|+|||++++.-
T Consensus 133 ~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 133 GDGWKGWPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCcccCCCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 566664432 4999998776655 345678999999998843
No 117
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=92.38 E-value=0.26 Score=32.88 Aligned_cols=33 Identities=9% Similarity=0.213 Sum_probs=26.3
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
.|+|++..+ . ....+++++++.|+|||++++.+
T Consensus 113 fDlV~~~~~-~-----~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 113 FDVVTSRAV-A-----SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ccEEEEccc-c-----CHHHHHHHHHHhcCCCeEEEEEe
Confidence 599998652 1 24678999999999999999864
No 118
>PHA03411 putative methyltransferase; Provisional
Probab=92.33 E-value=0.93 Score=32.25 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=44.8
Q ss_pred CCCCCCC-Cc-ccEEEeccccccCChHHHH------------------HHHHHHHhhCCCCCEEEEEeeecCCCCCCchh
Q 048196 2 DDMFQNV-PK-GDAIFMKWILHNWSDDHCL------------------KLLKIYYKSIPEDGKVIVVESILPELPETSTV 61 (115)
Q Consensus 2 gd~~~~~-p~-~D~v~~~~vlh~~~d~~~~------------------~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~ 61 (115)
+|+++.. .. .|+|++.--+++.+.++.. +.++....-|+|+|.+++. .... +.
T Consensus 116 ~D~~e~~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~---~~- 188 (279)
T PHA03411 116 SDVFEFESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGR---PY- 188 (279)
T ss_pred CchhhhcccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eecc---cc-
Confidence 5777633 33 5999998877776554322 3445555667777766554 1111 00
Q ss_pred hhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCe
Q 048196 62 SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSG 98 (115)
Q Consensus 62 ~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 98 (115)
+ ...-+.+|++++++++||..
T Consensus 189 ------y----------~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 189 ------Y----------DGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred ------c----------cccCCHHHHHHHHHhcCcEe
Confidence 0 11135789999999999864
No 119
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.21 E-value=0.34 Score=34.74 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii 47 (115)
..++++++.+.|+|||++++
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 57889999999999999876
No 120
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=91.97 E-value=0.4 Score=33.95 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii 47 (115)
..++++++.+.|+|||++++
T Consensus 230 ~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLVV 249 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 47889999999999998875
No 121
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=91.90 E-value=0.37 Score=32.05 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=30.4
Q ss_pred cEEEeccccccCCh----------HHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 12 DAIFMKWILHNWSD----------DHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 12 D~v~~~~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
|+|.+.++|||++- +...++++++++.|+|+..+|-.-+
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt 100 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTA 100 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecC
Confidence 99999999999876 3366778888888888866655443
No 122
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=91.74 E-value=0.51 Score=31.61 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=29.0
Q ss_pred CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 7 NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 7 ~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
++|+.|++++.--- ....+|+.+.+.|+|||+|++.-.
T Consensus 99 ~~~~~daiFIGGg~------~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 99 DLPSPDAIFIGGGG------NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCCCCEEEECCCC------CHHHHHHHHHHHcCcCCeEEEEee
Confidence 34456888887652 246899999999999999988543
No 123
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=91.61 E-value=0.26 Score=32.48 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=26.9
Q ss_pred ccEEEeccccc---cCC------hHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILH---NWS------DDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh---~~~------d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|+|+.....| .|+ .+...++++++++.|+|||++++.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 49999754322 121 122468999999999999999985
No 124
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=91.48 E-value=0.61 Score=33.51 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCCCCCCCc-ccEEEeccccccCC---hHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 2 DDMFQNVPK-GDAIFMKWILHNWS---DDHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 2 gd~~~~~p~-~D~v~~~~vlh~~~---d~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
.|.++++.. .|+|++.==+|.=- +.-+.++++.+.+.|++||.|.|+-.
T Consensus 215 s~~~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 215 SNLYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ecccccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 456665553 69999998888433 33456999999999999999999654
No 125
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=91.08 E-value=0.78 Score=32.38 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=31.5
Q ss_pred CCCCCCCCc--ccEEEec-------------cccccCCh----------HHHHHHHHHHHhhCCCCCEEEE
Q 048196 2 DDMFQNVPK--GDAIFMK-------------WILHNWSD----------DHCLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 2 gd~~~~~p~--~D~v~~~-------------~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lii 47 (115)
||++++++. .|++++. .++++-|. +...++++++.+.|+|||.+++
T Consensus 172 ~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 172 SNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred CchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 677776653 4888874 23333332 2467889999999999998755
No 126
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=90.80 E-value=0.33 Score=33.41 Aligned_cols=82 Identities=22% Similarity=0.337 Sum_probs=49.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCC-CCEEEEEeeecCCC------CCCchhhhhchhccchhcccCCCceeCC-
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPE-DGKVIVVESILPEL------PETSTVSKRNSQLDVLMMTQNPSGKKRT- 83 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p-gg~lii~d~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~g~~rt- 83 (115)
|+|++.++|.---++ -++|.-++.+|+| +|++|+.= ++|-. ..+. ..+ .| +.+ ..+|+.+.
T Consensus 171 dli~clNlLDRc~~p--~kLL~Di~~vl~psngrvivaL-VLP~~hYVE~N~~g~-~~r----Pd-n~L--e~~Gr~~ee 239 (288)
T KOG3987|consen 171 DLILCLNLLDRCFDP--FKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVETNTSGL-PLR----PD-NLL--ENNGRSFEE 239 (288)
T ss_pred ehHHHHHHHHhhcCh--HHHHHHHHHHhccCCCcEEEEE-EecccceeecCCCCC-cCC----ch-HHH--HhcCccHHH
Confidence 888888888655543 7999999999999 78887643 22211 1110 001 11 111 12565332
Q ss_pred -HHHHHHHHHhCCCCeeEEEEc
Q 048196 84 -KHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 84 -~~e~~~ll~~aGf~~~~~~~~ 104 (115)
.+.+-++|+.+||.+....+.
T Consensus 240 ~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 240 EVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhcCchhhhhhcC
Confidence 224678899999988765444
No 127
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=90.61 E-value=0.5 Score=31.43 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=25.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii 47 (115)
.|++++.. +..+...+++.+.+.|+|||++++
T Consensus 112 ~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 112 FDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence 59988743 223457899999999999999986
No 128
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=90.57 E-value=0.45 Score=33.36 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=33.1
Q ss_pred CCCCCC-CCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196 2 DDMFQN-VPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE 54 (115)
Q Consensus 2 gd~~~~-~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~ 54 (115)
||..+. .+. .|++++ |++|+ -..+.++.++|+|||.+++.-+..++
T Consensus 153 ~Dv~~~~~~~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 153 GDVREGIDEEDVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred ccccccccccccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 455552 233 476553 77876 79999999999999999997665553
No 129
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=90.37 E-value=0.66 Score=31.29 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=26.9
Q ss_pred CCCCCCCC---cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 2 DDMFQNVP---KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 2 gd~~~~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
||..+..+ ..|+|++....++.+ +.+.+.|+|||++++.
T Consensus 135 ~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 135 GDGTQGWEPLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred CCcccCCcccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 56655333 249999887665443 4567789999999884
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=90.23 E-value=0.73 Score=34.48 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=33.5
Q ss_pred ccEEEe------ccccccCChH--------------HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 11 GDAIFM------KWILHNWSDD--------------HCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 11 ~D~v~~------~~vlh~~~d~--------------~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
.|.|++ ..+++..++- ...++|+++.+.|+|||++++..+-....
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE 374 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 499985 2456655541 14789999999999999999998866543
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.06 E-value=0.58 Score=32.81 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=27.3
Q ss_pred ccEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWSDDH--CLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|+|++...-+.-+... ..+.++++++.|+|||.+++.
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 49988765433222222 468899999999999999885
No 132
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=89.28 E-value=6.5 Score=30.32 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii 47 (115)
..++++++.+.|+|||.+++
T Consensus 248 ~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred HHHHHHHHHHhccCCCEEEE
Confidence 45688888999999999865
No 133
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=89.21 E-value=0.44 Score=33.77 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=27.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
.|+|++.... +....+++++++.|+|||.+++...
T Consensus 226 fDlVvan~~~-----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 226 ADVIVANILA-----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ceEEEEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4999875432 2346899999999999999998654
No 134
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=88.43 E-value=0.43 Score=35.22 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=57.9
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS 78 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (115)
+|+.. +.++ .|.+....+..+.++. .++++++++.++|||..++.|.+....-.++.. ...++..-...+.
T Consensus 167 ~~~~~~~fedn~fd~v~~ld~~~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~----~~~~i~~~i~~gd 240 (364)
T KOG1269|consen 167 ADFGKMPFEDNTFDGVRFLEVVCHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNS----EHVDILLEIEGGD 240 (364)
T ss_pred hhhhcCCCCccccCcEEEEeecccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhhccCCCc----ccccccCceeccc
Confidence 45666 4554 4999888888889885 799999999999999999999875543222110 1112111110000
Q ss_pred --ceeCCHHHHHHHHHhCCCCeeE
Q 048196 79 --GKKRTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 79 --g~~rt~~e~~~ll~~aGf~~~~ 100 (115)
...........++...||....
T Consensus 241 ~~~~~~~~~d~~~~~~~~~~~~~~ 264 (364)
T KOG1269|consen 241 ALPAETFNTDVFDLLKSFGFEHLK 264 (364)
T ss_pred cccceeccccHHHHHhhccchhhh
Confidence 1233445666777777777655
No 135
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=88.36 E-value=0.47 Score=33.17 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=30.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCC-EEEEEeee
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDG-KVIVVESI 51 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg-~lii~d~~ 51 (115)
.|+|+...++|-++- .+..+.+++.|++.| .+.+.-..
T Consensus 101 VDlI~~Aqa~HWFdl---e~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 101 VDLITAAQAVHWFDL---ERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred eeeehhhhhHHhhch---HHHHHHHHHHcCCCCCEEEEEEcc
Confidence 499999999998876 488999999998866 55554433
No 136
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=88.33 E-value=2.8 Score=25.10 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=49.2
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc------eeCCHHHHHHHHH
Q 048196 19 ILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG------KKRTKHEFLTLAT 92 (115)
Q Consensus 19 vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g------~~rt~~e~~~ll~ 92 (115)
+|=|++.++..++|+++.. +. .+++++. ..|..+ . +.....+.-+ ++++ ...+.+++.+.++
T Consensus 4 vLIHYp~~d~~~~l~~La~-~t-~~~~ifT--fAP~T~---~---L~~m~~iG~l--FP~~dRsp~i~~~~e~~l~~~l~ 71 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLAS-RT-RGSLIFT--FAPRTP---L---LALMHAIGKL--FPRPDRSPRIYPHREEDLRRALA 71 (97)
T ss_pred eEeccCHHHHHHHHHHHHH-hc-cCcEEEE--ECCCCH---H---HHHHHHHhcc--CCCCCCCCcEEEeCHHHHHHHHH
Confidence 4557888899999998876 23 4455441 333221 1 1111111111 2222 2346789999999
Q ss_pred hCCCCeeEEEEcCCce---EEEEEE
Q 048196 93 GAGFSGTRFEWFTCNL---WVRDFY 114 (115)
Q Consensus 93 ~aGf~~~~~~~~~~~~---~lie~~ 114 (115)
++||++.+...+...+ -++|++
T Consensus 72 ~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 72 AAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred hCCCeeeecccccCcChHHHHhhcc
Confidence 9999999888876443 245544
No 137
>PRK00811 spermidine synthase; Provisional
Probab=87.43 E-value=1.6 Score=30.94 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=26.2
Q ss_pred ccEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWSDDH--CLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|+|++-..-+.-+... ..++++.+++.|+|||.+++.
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 49998754333222221 368899999999999998864
No 138
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=87.22 E-value=7.1 Score=26.35 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=55.0
Q ss_pred CCc-c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC---------CCchhhhhc-hhccchhccc
Q 048196 8 VPK-G-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP---------ETSTVSKRN-SQLDVLMMTQ 75 (115)
Q Consensus 8 ~p~-~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~---------~~~~~~~~~-~~~~l~~~~~ 75 (115)
.|. . |.|+++.+|.....+ .++|+++.+. |.+.+|.=+...--+ ..|....+. .++ .
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~P--~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY------d 139 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRRP--DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY------D 139 (193)
T ss_pred CCCCCccEEehHhHHHhHhHH--HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc------C
Confidence 453 3 999999999999875 5777776554 667766433221000 000000000 111 2
Q ss_pred CCCceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196 76 NPSGKKRTKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 76 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
++|=+.-|..+++++.++.|+++.+...+.
T Consensus 140 TPNih~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 140 TPNIHLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred CCCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 456677799999999999999999887764
No 139
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.12 E-value=2.6 Score=29.60 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=55.5
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc-eeCCHHHHH
Q 048196 10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG-KKRTKHEFL 88 (115)
Q Consensus 10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-~~rt~~e~~ 88 (115)
..|+|....||-++.+- ..++.-+...|+|||-+...-.-.++... .++ .+.- -.++..-++
T Consensus 188 r~DLi~AaDVl~YlG~L--e~~~~~aa~~L~~gGlfaFSvE~l~~~~~-------------f~l--~ps~RyAH~~~YVr 250 (287)
T COG4976 188 RFDLIVAADVLPYLGAL--EGLFAGAAGLLAPGGLFAFSVETLPDDGG-------------FVL--GPSQRYAHSESYVR 250 (287)
T ss_pred cccchhhhhHHHhhcch--hhHHHHHHHhcCCCceEEEEecccCCCCC-------------eec--chhhhhccchHHHH
Confidence 36999999999999874 58888899999999998874333333211 011 0111 124677889
Q ss_pred HHHHhCCCCeeEEEEc
Q 048196 89 TLATGAGFSGTRFEWF 104 (115)
Q Consensus 89 ~ll~~aGf~~~~~~~~ 104 (115)
++++..||+++++.++
T Consensus 251 ~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 251 ALLAASGLEVIAIEDT 266 (287)
T ss_pred HHHHhcCceEEEeecc
Confidence 9999999999988766
No 140
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=87.10 E-value=2.1 Score=32.26 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESILPE 54 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~~~ 54 (115)
.++|+++.+.|+|||+++...+....
T Consensus 357 ~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 357 AELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 47999999999999999998866543
No 141
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=86.65 E-value=5.1 Score=28.19 Aligned_cols=55 Identities=11% Similarity=0.124 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
..++.+++++.|+|||+++= .+ .++ ... ....| -+....+.|+++||..++....
T Consensus 224 seefY~El~RiLkrgGrlFH--Yv-G~P-g~r-----yrG~d-------------~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 224 SEEFYRELYRILKRGGRLFH--YV-GNP-GKR-----YRGLD-------------LPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHHHHHHHHcCcCCcEEE--Ee-CCC-Ccc-----cccCC-------------hhHHHHHHHHhcCceeeeeehh
Confidence 66788999999999999863 22 211 110 01111 1468889999999998776544
No 142
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=86.65 E-value=1.9 Score=26.91 Aligned_cols=33 Identities=21% Similarity=0.117 Sum_probs=25.7
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWV 110 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~l 110 (115)
.+..+|.+++.+++++|||++.+...-+ +.+++
T Consensus 92 ~S~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 92 NSYKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL 125 (127)
T ss_pred EeeCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence 4567899999999999999998876554 33444
No 143
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=85.93 E-value=2.1 Score=25.46 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=30.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE 54 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~ 54 (115)
.|++ .....+++.+ ....++++.+.++|+|.+++.+.....
T Consensus 120 ~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 120 FDLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 3888 5544444444 689999999999999999998876554
No 144
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=85.82 E-value=4.9 Score=28.17 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC--
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT-- 105 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-- 105 (115)
-..+++.+.+.|+|||++.++- +.. ...||.+++++.+|...++..+.
T Consensus 149 le~~i~~a~~~lk~~G~l~~V~---r~e---------------------------rl~ei~~~l~~~~~~~k~i~~V~p~ 198 (248)
T COG4123 149 LEDLIRAAAKLLKPGGRLAFVH---RPE---------------------------RLAEIIELLKSYNLEPKRIQFVYPK 198 (248)
T ss_pred HHHHHHHHHHHccCCCEEEEEe---cHH---------------------------HHHHHHHHHHhcCCCceEEEEecCC
Confidence 4678888999999999998742 221 12588889998898887776552
Q ss_pred ----CceEEEEEEC
Q 048196 106 ----CNLWVRDFYK 115 (115)
Q Consensus 106 ----~~~~lie~~~ 115 (115)
...-|+|+.|
T Consensus 199 ~~k~A~~vLv~~~k 212 (248)
T COG4123 199 IGKAANRVLVEAIK 212 (248)
T ss_pred CCCcceEEEEEEec
Confidence 3556777765
No 145
>PRK07402 precorrin-6B methylase; Provisional
Probab=85.63 E-value=1.3 Score=29.36 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 048196 27 HCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 27 ~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
....+++++.+.|+|||++++...
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEee
Confidence 357899999999999999998764
No 146
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=85.55 E-value=0.84 Score=27.21 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=27.2
Q ss_pred ccEEEeccccccCC-h-----HHHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWS-D-----DHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~-d-----~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|+|++.--.+... + .....+++++.+.|+|||.++++
T Consensus 71 ~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 71 FDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 49999986665432 1 12468899999999999999875
No 147
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=85.20 E-value=1.2 Score=29.58 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 048196 29 LKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d 49 (115)
..+++.+++.|+|||.+++..
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEe
Confidence 578999999999999998754
No 148
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=84.34 E-value=3.9 Score=29.79 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=48.7
Q ss_pred CCCCCCC-CCcc--cEEEeccccccCCh-------------------------HHHHH------------HHHHHHhhCC
Q 048196 1 MDDMFQN-VPKG--DAIFMKWILHNWSD-------------------------DHCLK------------LLKIYYKSIP 40 (115)
Q Consensus 1 ~gd~~~~-~p~~--D~v~~~~vlh~~~d-------------------------~~~~~------------iL~~~~~aL~ 40 (115)
+|.|+.. +|.. |+++.++.||-++. +...+ +|+.=.+=|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 4789984 6753 99999999993331 12222 2222223488
Q ss_pred CCCEEEEEeeecCCCCCCc-----hhhhhchhccchhcccCCCc--------------eeCCHHHHHHHHHhCC-CCeeE
Q 048196 41 EDGKVIVVESILPELPETS-----TVSKRNSQLDVLMMTQNPSG--------------KKRTKHEFLTLATGAG-FSGTR 100 (115)
Q Consensus 41 pgg~lii~d~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~g--------------~~rt~~e~~~ll~~aG-f~~~~ 100 (115)
|||++++.=...++..... ....+. ..+.-|+ ..| -.+|.+|+++.+++.| |++.+
T Consensus 175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~--~~l~dMv--~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~ 250 (334)
T PF03492_consen 175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLA--DALRDMV--AEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEK 250 (334)
T ss_dssp EEEEEEEEEEE-STSSTTSTTCCCHHHHHH--HHHHHHH--HTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEE
T ss_pred cCcEEEEEEeeccccccccCCcchHHHHHH--HHHHHHH--HcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEE
Confidence 9999999887666521110 011110 0111111 122 3579999999999877 65544
Q ss_pred E
Q 048196 101 F 101 (115)
Q Consensus 101 ~ 101 (115)
+
T Consensus 251 l 251 (334)
T PF03492_consen 251 L 251 (334)
T ss_dssp E
T ss_pred E
Confidence 3
No 149
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=84.13 E-value=6.7 Score=25.93 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
.+.++++++.|||||.+++.=++-.
T Consensus 91 l~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEeecCC
Confidence 5778889999999999999655543
No 150
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=83.88 E-value=1.9 Score=32.15 Aligned_cols=42 Identities=14% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCCc--ccEEEeccccccCChHH-----HHHHHHHHHhhCCCCCEEEEEe
Q 048196 7 NVPK--GDAIFMKWILHNWSDDH-----CLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 7 ~~p~--~D~v~~~~vlh~~~d~~-----~~~iL~~~~~aL~pgg~lii~d 49 (115)
.+|. .|.|++..-. -|+... ...+|+.+++.|+|||.+.+.-
T Consensus 187 ~~~~~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 187 LLPSNSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred hCCCCceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3454 3888764322 243221 2578999999999999998843
No 151
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.78 E-value=1.3 Score=31.98 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 26 DHCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 26 ~~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
++..+.|..+.+.|+|||||.|+-+..-++
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLED 250 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLED 250 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence 347788999999999999999999876555
No 152
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=83.76 E-value=1.8 Score=31.20 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 27 HCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 27 ~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
+..+.|..+.+.|+|||+|+|+-+..-++
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 46788899999999999999998865554
No 153
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=83.73 E-value=3.1 Score=29.50 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=34.8
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE-EeeecC
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV-VESILP 53 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii-~d~~~~ 53 (115)
=.+++...|-+++.++|...|.+++.+|+||-.+++ +|...+
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 466778899999999999999999999999977666 555443
No 154
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.49 E-value=4 Score=27.89 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=30.1
Q ss_pred CCCCCCCCc-c--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 2 DDMFQNVPK-G--DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 2 gd~~~~~p~-~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
||=...+|+ + |.|+..-..-..|+ . ..+.|+|||++++-.-
T Consensus 127 gDG~~G~~~~aPyD~I~Vtaaa~~vP~----~----Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 127 GDGSKGWPEEAPYDRIIVTAAAPEVPE----A----LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcccCCCCCCCcCEEEEeeccCCCCH----H----HHHhcccCCEEEEEEc
Confidence 455566664 3 99999998877776 2 3456999999998543
No 155
>PRK04457 spermidine synthase; Provisional
Probab=81.28 E-value=2 Score=30.09 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=26.4
Q ss_pred ccEEEecccccc--CChHH-HHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHN--WSDDH-CLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~--~~d~~-~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|+|++- .++. .+... ..++++++++.|+|||++++.
T Consensus 137 yD~I~~D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 137 TDVILVD-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCEEEEe-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 4999864 3322 22211 379999999999999999985
No 156
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=81.04 E-value=2.7 Score=30.20 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCCC
Q 048196 27 HCLKLLKIYYKSIPEDGKVIVVESILPELP 56 (115)
Q Consensus 27 ~~~~iL~~~~~aL~pgg~lii~d~~~~~~~ 56 (115)
+....|..+.+.|+|||+++|+-+..-+++
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSlEDr 243 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSLEDR 243 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHH
Confidence 467889999999999999999988765553
No 157
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=80.35 E-value=3.1 Score=29.59 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=24.4
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii 47 (115)
.|+|++..-. ..+.+++.++|.++.+.|+||+++++
T Consensus 193 ~DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 193 YDVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred CCEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEE
Confidence 4888876544 45666789999999999999998877
No 158
>PLN02366 spermidine synthase
Probab=80.26 E-value=4.5 Score=29.16 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=25.6
Q ss_pred ccEEEeccccccCChH--HHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWSDD--HCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|+|++-..-+.-+.. -..++++.++++|+|||.+++.
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 4999874322221211 1467899999999999999764
No 159
>PRK01581 speE spermidine synthase; Validated
Probab=79.91 E-value=4.6 Score=30.01 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=25.4
Q ss_pred ccEEEecccc---ccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWIL---HNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vl---h~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|+|++-..- +..+.-...+.++.++++|+|||.+++.
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 3888875210 0011122467899999999999999875
No 160
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=79.83 E-value=0.72 Score=35.35 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=37.9
Q ss_pred CCCc-c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 7 NVPK-G-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 7 ~~p~-~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
|.|. + |++.++.++..|...+ ..+|-.+-+.|+|||.++..-+-..
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 5564 4 9999999999999876 4688999999999999988665444
No 161
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=79.56 E-value=16 Score=27.75 Aligned_cols=57 Identities=16% Similarity=-0.035 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc-CC
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF-TC 106 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~ 106 (115)
..++++.+.+.|+|||.+++ |.-.+ -.+++.+++++.||..+++..- .+
T Consensus 360 yr~Ii~~a~~~LkpgG~lil-EiG~~-----------------------------Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLL-EHGFD-----------------------------QGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEE-EECcc-----------------------------HHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 34677777788888888654 32110 1357788888889987766543 45
Q ss_pred ceEEEEEE
Q 048196 107 NLWVRDFY 114 (115)
Q Consensus 107 ~~~lie~~ 114 (115)
...++.++
T Consensus 410 ~dR~v~~~ 417 (423)
T PRK14966 410 LDRVTLGK 417 (423)
T ss_pred CcEEEEEE
Confidence 55555443
No 162
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=79.47 E-value=4 Score=26.65 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=28.7
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
.|+|+.+.++++ ++....+++-+...|+|+|.+++....-
T Consensus 120 ~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 120 FDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp BSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 599999999965 4667889999999999998877765443
No 163
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=79.28 E-value=2.1 Score=32.89 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=34.4
Q ss_pred CCc-ccEEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 8 VPK-GDAIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 8 ~p~-~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
.|. .|++....++..+.+ -+...||-++-+.|+|+|.++|-|.
T Consensus 424 YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 343 499999999888775 3367888999999999999999653
No 164
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=79.01 E-value=8.8 Score=25.63 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=37.4
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI 51 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~ 51 (115)
.|.++..--+-.+|-....++|+++...|++||.++-...-
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 49999999888999999999999999999999999887765
No 165
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=78.86 E-value=2.5 Score=31.81 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPE 54 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~ 54 (115)
..++|+++.+.|+|||+++...+....
T Consensus 363 Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 363 QAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 368999999999999999988765543
No 166
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=78.46 E-value=6.5 Score=27.04 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=26.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
.|++++ +-..+.-...+..+.+.|+|||.+++-+...
T Consensus 145 fD~Vfi-----Da~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 145 FDFAFV-----DADKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CCEEEE-----CCCHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 488876 3334556788899999999999876644333
No 167
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=76.38 E-value=4.4 Score=30.40 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPE 54 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~ 54 (115)
..++|+++.+.|+|||++++..+....
T Consensus 351 q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 351 QSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 358999999999999999988864443
No 168
>PRK03612 spermidine synthase; Provisional
Probab=75.45 E-value=6.3 Score=30.47 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=25.5
Q ss_pred ccEEEeccccccCChH---HHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWSDD---HCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|+|++...-+..+.. -..++++++++.|+|||.+++.
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 4988876332221111 1346899999999999998875
No 169
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=74.97 E-value=2.1 Score=30.98 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 26 DHCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 26 ~~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
++....|.++.+.|+|||+++|+-+..-++
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLED 247 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLED 247 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhh
Confidence 446788999999999999999998765444
No 170
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=74.83 E-value=5.4 Score=27.88 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESILPE 54 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~~~ 54 (115)
.++|+++.+.|+|||+|+...+....
T Consensus 179 ~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 179 KELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 56999999999999999876654443
No 171
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=72.60 E-value=13 Score=27.83 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=19.0
Q ss_pred CCCCCC-CCCcc--cEEEeccccccCC
Q 048196 1 MDDMFQ-NVPKG--DAIFMKWILHNWS 24 (115)
Q Consensus 1 ~gd~~~-~~p~~--D~v~~~~vlh~~~ 24 (115)
+|.|++ =+|.. ++++.++.+|-++
T Consensus 150 pGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 150 PGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred CccccccccCCCceEEEEeeccceecc
Confidence 488999 46853 9999999999555
No 172
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=71.56 E-value=5 Score=29.12 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=22.3
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
.|+|++...+++.+ ..+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 49999876655443 33567899999998854
No 173
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=71.17 E-value=27 Score=25.25 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=40.4
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+|+. |+|= +-..++...+.+.++|||++++.-.+.+. .+...+-
T Consensus 230 ~DvIVA-NILA----~vl~~La~~~~~~lkpgg~lIlSGIl~~q-----------------------------~~~V~~a 275 (300)
T COG2264 230 FDVIVA-NILA----EVLVELAPDIKRLLKPGGRLILSGILEDQ-----------------------------AESVAEA 275 (300)
T ss_pred ccEEEe-hhhH----HHHHHHHHHHHHHcCCCceEEEEeehHhH-----------------------------HHHHHHH
Confidence 488774 4442 23568889999999999999884422211 2456667
Q ss_pred HHhCCCCeeEEEEc
Q 048196 91 ATGAGFSGTRFEWF 104 (115)
Q Consensus 91 l~~aGf~~~~~~~~ 104 (115)
+.++||.++++...
T Consensus 276 ~~~~gf~v~~~~~~ 289 (300)
T COG2264 276 YEQAGFEVVEVLER 289 (300)
T ss_pred HHhCCCeEeEEEec
Confidence 77788888776654
No 174
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=69.54 E-value=19 Score=23.69 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 26 DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 26 ~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
+--.+++.-+++.|.|||.|++ +.+.+.... ..+ .-|...-..-+--.|.++||+-.+-...
T Consensus 70 ~~E~~l~~~l~~~lspg~~lfV-eYv~DrET~----------~~l------qkG~~p~atrLGfeL~k~GftwfkdWY~ 131 (192)
T COG4353 70 ELEVKLYKVLYNFLSPGGKLFV-EYVRDRETR----------YRL------QKGKPPVATRLGFELLKAGFTWFKDWYF 131 (192)
T ss_pred HHHHHHHHHHHHhcCCCCceEE-EEEechhHH----------HHH------HcCCCCccchhhHHHHhCcceeeeeeec
Confidence 3347888999999999999976 666654310 111 1222222333444566788887765444
No 175
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=69.54 E-value=3 Score=28.31 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=25.3
Q ss_pred CCCCCCCCc-c--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 2 DDMFQNVPK-G--DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 2 gd~~~~~p~-~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
||-...+|. + |.|+........|.. ..+.|++||+|++.
T Consensus 130 gdg~~g~~~~apfD~I~v~~a~~~ip~~--------l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAAVPEIPEA--------LLEQLKPGGRLVAP 171 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSBBSS--HH--------HHHTEEEEEEEEEE
T ss_pred cchhhccccCCCcCEEEEeeccchHHHH--------HHHhcCCCcEEEEE
Confidence 455555553 3 999999888665542 44568999999983
No 176
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=69.30 E-value=10 Score=27.57 Aligned_cols=33 Identities=18% Similarity=0.032 Sum_probs=25.9
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWV 110 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~l 110 (115)
++..+|.+++..++++|||++.+...-+ +.+++
T Consensus 284 ~S~Kyt~~~~~~l~~~aG~~~~~~W~d~~~~f~~ 317 (319)
T TIGR03439 284 CSGKYDKDEREKLCQSAGLKVVDVWTNEDGDYGI 317 (319)
T ss_pred eeeCCCHHHHHHHHHHCCCeeeEEEECCCCceee
Confidence 4567899999999999999998876654 33443
No 177
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=68.74 E-value=7.7 Score=29.22 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=19.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
.++|+++.+.|+|||+++...+..
T Consensus 359 ~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 359 LEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCC
Confidence 578999999999999998765544
No 178
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=68.58 E-value=15 Score=23.14 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=21.9
Q ss_pred Cc-eeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEE
Q 048196 78 SG-KKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRD 112 (115)
Q Consensus 78 ~g-~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie 112 (115)
+| +.-.-+|++++|+++||+.++.+ +.++.-|++
T Consensus 14 GG~nki~MaeLr~~l~~~Gf~~V~Ty-i~SGNvvf~ 48 (137)
T PF08002_consen 14 GGKNKIKMAELREALEDLGFTNVRTY-IQSGNVVFE 48 (137)
T ss_dssp TTBS---HHHHHHHHHHCT-EEEEEE-TTTTEEEEE
T ss_pred CCCCcccHHHHHHHHHHcCCCCceEE-EeeCCEEEe
Confidence 44 34578899999999999988854 445554544
No 179
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.30 E-value=6.3 Score=27.21 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=21.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii 47 (115)
|.|..... +.++.++..+-|+|||+|+|
T Consensus 164 DaIhvGAa--------a~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 164 DAIHVGAA--------ASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred ceEEEccC--------ccccHHHHHHhhccCCeEEE
Confidence 77766632 35677788888999999988
No 180
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=67.21 E-value=5.8 Score=30.37 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=19.4
Q ss_pred HHHHHHHHhhCCCCCEEEEEeee
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESI 51 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~ 51 (115)
.+||.++.+.|+|||+|+-.-+.
T Consensus 222 ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 222 RELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEECCC
Confidence 78999999999999999665554
No 181
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=66.78 E-value=9.3 Score=28.82 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
..++|.++.+.|+|||+++..-+...
T Consensus 345 Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 345 QLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 36789999999999999877766544
No 182
>PRK11524 putative methyltransferase; Provisional
Probab=66.30 E-value=8.4 Score=27.21 Aligned_cols=20 Identities=5% Similarity=0.280 Sum_probs=17.8
Q ss_pred HHHHHHHHhhCCCCCEEEEE
Q 048196 29 LKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~ 48 (115)
...+..+++.|+|||.++|.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 57889999999999999884
No 183
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=66.25 E-value=2.9 Score=31.76 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=27.7
Q ss_pred CCCCC-CCC-cccEEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEE
Q 048196 2 DDMFQ-NVP-KGDAIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGKVI 46 (115)
Q Consensus 2 gd~~~-~~p-~~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~li 46 (115)
||+.+ ..| ++|+++.-..= .+.+ |-..+.|....+-|+|||.++
T Consensus 248 ~d~r~v~lpekvDIIVSElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 248 GDMREVELPEKVDIIVSELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp S-TTTSCHSS-EEEEEE---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CcccCCCCCCceeEEEEeccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 67888 677 47999866553 3444 345667877788899997653
No 184
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=64.84 E-value=4.8 Score=26.63 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii 47 (115)
....++.+++.|+|||.++|
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i 54 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFI 54 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEE
Confidence 67889999999999999988
No 185
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=64.49 E-value=2.3 Score=29.88 Aligned_cols=82 Identities=22% Similarity=0.158 Sum_probs=47.4
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeC------CH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKR------TK 84 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~r------t~ 84 (115)
-|+++.+.-+|-.+| ...-+.+|+.+|||+|.++- .+...+. .++. .....+.-+- .-+|... ..
T Consensus 138 ~DLiisSlslHW~Nd--LPg~m~~ck~~lKPDg~Fia--smlggdT---LyEL-R~slqLAelE-R~GGiSphiSPf~qv 208 (325)
T KOG2940|consen 138 VDLIISSLSLHWTND--LPGSMIQCKLALKPDGLFIA--SMLGGDT---LYEL-RCSLQLAELE-REGGISPHISPFTQV 208 (325)
T ss_pred hhhhhhhhhhhhhcc--CchHHHHHHHhcCCCccchh--HHhcccc---HHHH-HHHhhHHHHH-hccCCCCCcChhhhh
Confidence 499999999985555 36778899999999987643 2222221 1111 1111111111 1122111 23
Q ss_pred HHHHHHHHhCCCCeeEE
Q 048196 85 HEFLTLATGAGFSGTRF 101 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~~ 101 (115)
.++-.||..|||....+
T Consensus 209 rDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 209 RDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhhHHhhcCccccee
Confidence 47889999999987654
No 186
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=64.38 E-value=7.1 Score=20.25 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCCCeeEE
Q 048196 85 HEFLTLATGAGFSGTRF 101 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~~ 101 (115)
.|+.++|+++||...+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 58899999999988753
No 187
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=64.26 E-value=7.1 Score=29.01 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
..+||++..+.|++||+++-.-+-+..-
T Consensus 275 Q~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 275 QLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 5789999999999999998877665543
No 188
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=63.75 E-value=19 Score=25.85 Aligned_cols=61 Identities=18% Similarity=0.103 Sum_probs=39.9
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL 90 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l 90 (115)
.|+|+.. ++ .+....+...+.+.|+|||.+++.=....+ .+++.+.
T Consensus 226 ~dlvvAN-I~----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~-----------------------------~~~v~~a 271 (295)
T PF06325_consen 226 FDLVVAN-IL----ADVLLELAPDIASLLKPGGYLILSGILEEQ-----------------------------EDEVIEA 271 (295)
T ss_dssp EEEEEEE-S-----HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG-----------------------------HHHHHHH
T ss_pred CCEEEEC-CC----HHHHHHHHHHHHHhhCCCCEEEEccccHHH-----------------------------HHHHHHH
Confidence 4888743 33 234577888888999999999884433321 2456666
Q ss_pred HHhCCCCeeEEEEcCC
Q 048196 91 ATGAGFSGTRFEWFTC 106 (115)
Q Consensus 91 l~~aGf~~~~~~~~~~ 106 (115)
+++ ||+..+....+.
T Consensus 272 ~~~-g~~~~~~~~~~~ 286 (295)
T PF06325_consen 272 YKQ-GFELVEEREEGE 286 (295)
T ss_dssp HHT-TEEEEEEEEETT
T ss_pred HHC-CCEEEEEEEECC
Confidence 665 888877665543
No 189
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=62.94 E-value=5.8 Score=25.35 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 26 DHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 26 ~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+.-.+.|+++.+.|+|||.+.|+=
T Consensus 69 ~TTl~Al~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 69 ETTLKALEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhccCCEEEEEE
Confidence 346788899999999999999954
No 190
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=62.87 E-value=13 Score=25.78 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii 47 (115)
..++++++.+.|+|||++++
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 35788888899999999886
No 191
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=62.28 E-value=14 Score=28.39 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=32.1
Q ss_pred cEEEeccccccCChH-HHHHHHHHHH-hhCCCCCEEEEEeeecC
Q 048196 12 DAIFMKWILHNWSDD-HCLKLLKIYY-KSIPEDGKVIVVESILP 53 (115)
Q Consensus 12 D~v~~~~vlh~~~d~-~~~~iL~~~~-~aL~pgg~lii~d~~~~ 53 (115)
|++++++++|+.... ....+.++.. .+.++|+.++|+|.-..
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999999988753 3555555544 67899999999986443
No 192
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=61.92 E-value=16 Score=23.64 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=21.9
Q ss_pred cCC--hHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196 22 NWS--DDHCLKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 22 ~~~--d~~~~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
.|| .+++.-.|..+...|++|+.|+|+-...
T Consensus 76 y~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk 108 (155)
T PF08468_consen 76 YWPKAKAEAQYLLANLLSHLPPGTEIFVVGENK 108 (155)
T ss_dssp E--SSHHHHHHHHHHHHTTS-TT-EEEEEEEGG
T ss_pred EccCcHHHHHHHHHHHHHhCCCCCEEEEEecCc
Confidence 466 4668899999999999999999965443
No 193
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=61.86 E-value=6.5 Score=23.05 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 26 DHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 26 ~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+....-+..+.+.|+|||.+++-|
T Consensus 82 ~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 82 EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 456778889999999999888766
No 194
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=61.47 E-value=13 Score=23.33 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=17.7
Q ss_pred cchhcccCCCceeCCHHHHHHHHHhCCC-----CeeEEEEc
Q 048196 69 DVLMMTQNPSGKKRTKHEFLTLATGAGF-----SGTRFEWF 104 (115)
Q Consensus 69 ~l~~~~~~~~g~~rt~~e~~~ll~~aGf-----~~~~~~~~ 104 (115)
|+.-.+. -+|+.++.++|+.+|.. +| ...++.+-
T Consensus 49 dIs~qv~-~~G~k~~~e~WK~~~~~-~~~~~~~~~~~~~~g 87 (127)
T PF05772_consen 49 DISRQVE-WNGRKLDPEDWKELFTA-AFLIATGEEQRVVPG 87 (127)
T ss_dssp HHHHH---BTTB---HHHHHHHHHH-HH-----S--EEEE-
T ss_pred HHHHHhH-hcCccCCHHHHHHHHHH-HHhhhccchhhhccC
Confidence 3443333 38999999999999984 45 44455543
No 195
>PRK13699 putative methylase; Provisional
Probab=61.39 E-value=12 Score=25.72 Aligned_cols=20 Identities=10% Similarity=0.188 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii 47 (115)
....+++++++|+|||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 56888999999999998876
No 196
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=61.28 E-value=17 Score=24.76 Aligned_cols=24 Identities=17% Similarity=-0.081 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHhCCCCeeEEEEcC
Q 048196 82 RTKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 82 rt~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
.|..|+.+.++.-||+....+|.+
T Consensus 184 ~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 184 FTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred ccHHHHHHHHhcCCeEEEEeeccc
Confidence 467888888888888888777664
No 197
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=60.38 E-value=7.3 Score=20.88 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=9.3
Q ss_pred HHHHhCCCCeeE
Q 048196 89 TLATGAGFSGTR 100 (115)
Q Consensus 89 ~ll~~aGf~~~~ 100 (115)
+||++|||..-.
T Consensus 31 ~WL~~aGF~~G~ 42 (57)
T PF08845_consen 31 KWLEEAGFTIGD 42 (57)
T ss_pred hhhHHhCCCCCC
Confidence 688999997643
No 198
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=59.91 E-value=4.5 Score=20.59 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHhCCCCeeE
Q 048196 82 RTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 82 rt~~e~~~ll~~aGf~~~~ 100 (115)
--+.||.++|..+|....+
T Consensus 26 glP~eW~~ll~~sgis~~e 44 (46)
T cd01093 26 GLPEEWQRLLKSSGITKEE 44 (46)
T ss_pred CCCHHHHHHHHHcCCCHHH
Confidence 3468999999999987543
No 199
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=59.70 E-value=18 Score=25.16 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=8.6
Q ss_pred CCCEEEEEeeecCC
Q 048196 41 EDGKVIVVESILPE 54 (115)
Q Consensus 41 pgg~lii~d~~~~~ 54 (115)
|||..+|+|...+.
T Consensus 92 P~GvaiiVe~lTDN 105 (238)
T TIGR01033 92 PGGVAIIVECLTDN 105 (238)
T ss_pred CCceEEEEEEecCC
Confidence 66666666665554
No 200
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=59.68 E-value=34 Score=22.58 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=15.2
Q ss_pred CHHHHHHHHHhCCCCeeEEEE
Q 048196 83 TKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 83 t~~e~~~ll~~aGf~~~~~~~ 103 (115)
|.....++++++|.+++-+..
T Consensus 131 T~~a~~~Ll~~~ga~vvg~~~ 151 (179)
T COG0503 131 TALALIELLEQAGAEVVGAAF 151 (179)
T ss_pred HHHHHHHHHHHCCCEEEEEEE
Confidence 456778888888888776544
No 201
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=59.43 E-value=48 Score=26.53 Aligned_cols=32 Identities=9% Similarity=0.221 Sum_probs=26.7
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEEcCCceE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEWFTCNLW 109 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 109 (115)
-|.....+++.+.|.+.||+.+..+..+|-++
T Consensus 163 ~G~~i~~~~l~~~L~~~GY~r~~~v~~~GeFs 194 (652)
T PRK05298 163 VGQEIDRRELLRRLVDLQYERNDIDFQRGTFR 194 (652)
T ss_pred CCCCcCHHHHHHHHHHcCCcccCccCCCceEE
Confidence 67788999999999999999988776666553
No 202
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=59.06 E-value=21 Score=22.17 Aligned_cols=30 Identities=13% Similarity=-0.023 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCCeeEEEEcCCceEEEEEE
Q 048196 85 HEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~~~~~~~~~~lie~~ 114 (115)
.-+++-|.++||.+.+....++-...+.+.
T Consensus 93 ~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 93 GAVRRALQQAGFEVEKVPGFGRKREMLRAV 122 (124)
T ss_dssp HHHHHHHHHCTEEEEEEE-STTSSEEEEEE
T ss_pred HHHHHHHHHcCCEEEEcCCCCCcchheEEE
Confidence 478999999999998887776655555544
No 203
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=58.38 E-value=9.8 Score=27.33 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=37.4
Q ss_pred cEEEec-cccccCChHHHHHHHHHHHhhCCCCCEEEEEeee---cCCCCCCchhhhhchhccchhcccCCCceeCCHHHH
Q 048196 12 DAIFMK-WILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI---LPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEF 87 (115)
Q Consensus 12 D~v~~~-~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~ 87 (115)
|+++++ ++.|.++++ +.++++|+|.|++ |.. ++-.. +...--.+.+
T Consensus 224 d~ifvs~s~vh~L~p~--------l~~~~a~~A~Lvv-EtaKfmvdLrK---------------------Eq~~~F~~kv 273 (289)
T PF14740_consen 224 DLIFVSCSMVHFLKPE--------LFQALAPDAVLVV-ETAKFMVDLRK---------------------EQLQEFVKKV 273 (289)
T ss_pred CEEEEhhhhHhhcchH--------HHHHhCCCCEEEE-EcchhheeCCH---------------------HHHHHHHHHH
Confidence 766666 588888875 5567899977755 432 11111 1111124688
Q ss_pred HHHHHhCCCCeeE
Q 048196 88 LTLATGAGFSGTR 100 (115)
Q Consensus 88 ~~ll~~aGf~~~~ 100 (115)
.+|.++|||+...
T Consensus 274 ~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 274 KELAKAAGFKPVT 286 (289)
T ss_pred HHHHHHCCCcccc
Confidence 9999999998754
No 204
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=58.28 E-value=24 Score=24.52 Aligned_cols=66 Identities=6% Similarity=-0.061 Sum_probs=35.1
Q ss_pred hhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196 37 KSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 37 ~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
.++++|.+++|+|-++.....-..........+...... .---.+....|+++.++.|+.+..+..
T Consensus 171 ~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv-~vlv~~~~~~~~~l~~~~~vpv~sl~~ 236 (238)
T PRK08558 171 SALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGV-FFLIAVGEVGIDRAREETDAPVDALYT 236 (238)
T ss_pred HHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEE-EEEEecCchHHHHHhHhcCCCEEEEEE
Confidence 468899999999998887643211111111111110000 000123344588888888887766554
No 205
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=57.30 E-value=12 Score=24.64 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 25 DDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 25 d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
.+.-..+++-+++.|+|||+|+| +.+.|.. +..-+. -|..--..-+-..|..+||+..+-...
T Consensus 62 s~~E~~l~~~~~~~l~pg~~lfV-eY~~D~e----------T~~~L~------~G~pp~~TrLG~~Ll~~GFtwfKdWYf 124 (170)
T PF06557_consen 62 SPLEDELYKLFSRYLEPGGRLFV-EYVEDRE----------TRRQLQ------RGVPPAETRLGFSLLKAGFTWFKDWYF 124 (170)
T ss_dssp SHHHHHHHHHHHTT----SEEEE-E-TT-HH----------HHHHHH------TT--GGGSHHHHHHHTTT--EEEEEE-
T ss_pred ChHHHHHHHHHHHHhhhcCeEEE-EEecCHH----------HHHHHH------cCCCcccchhHHHHHhCCcEEEeeeec
Confidence 33447899999999999999987 5544422 101111 222222335667778899988876544
No 206
>PLN02476 O-methyltransferase
Probab=57.16 E-value=69 Score=22.89 Aligned_cols=37 Identities=8% Similarity=0.210 Sum_probs=26.3
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
|++++ |-+..+-...+..+.+.|+|||.|++-+....
T Consensus 196 D~VFI-----Da~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFV-----DADKRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CEEEE-----CCCHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 66554 34456678889999999999999776444433
No 207
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=56.40 E-value=24 Score=26.66 Aligned_cols=51 Identities=10% Similarity=0.251 Sum_probs=38.5
Q ss_pred CCCCCC------CCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 2 DDMFQN------VPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 2 gd~~~~------~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
|+|..+ +++++++++.++. ++++...++= ++..-+++|-||+-.+.+.+.+
T Consensus 258 gsf~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 258 GSFLDPKRVTEIQTEATVIFVNNVA--FDPELKLRSK-EILQKCKDGTRIISSKPLVPRP 314 (419)
T ss_pred cccCCHHHHHHHhhcceEEEEeccc--CCHHHHHhhH-HHHhhCCCcceEeccccccccc
Confidence 666663 2457999999998 6666655555 7777899999999988887743
No 208
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=55.20 E-value=20 Score=26.08 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=28.6
Q ss_pred cEEEecccccc---CChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 12 DAIFMKWILHN---WSDDHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 12 D~v~~~~vlh~---~~d~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
++|.+-+.++. -+-.+..++|+++.+.++||..|+|+|.
T Consensus 202 ~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 202 DLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 44444444442 2345578999999999999999999995
No 209
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=54.93 E-value=29 Score=21.20 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHhhCCCC----CEEEEEee
Q 048196 23 WSDDHCLKLLKIYYKSIPED----GKVIVVES 50 (115)
Q Consensus 23 ~~d~~~~~iL~~~~~aL~pg----g~lii~d~ 50 (115)
.+|++..++++.+.++.+.| |++++.+.
T Consensus 65 v~D~~v~~vv~~I~~~a~TG~~GDGkIfV~pV 96 (112)
T PRK10858 65 VPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDV 96 (112)
T ss_pred EChHhHHHHHHHHHHHhccCCCCCcEEEEEEh
Confidence 46888889999999888764 99999764
No 210
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=53.55 E-value=34 Score=19.92 Aligned_cols=77 Identities=9% Similarity=0.132 Sum_probs=34.1
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCC
Q 048196 20 LHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFS 97 (115)
Q Consensus 20 lh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~ 97 (115)
-+..+++++.+++.-.+=.+ |...|.+.--....-+........+..-.+..--.+.-+..|+.+|..+++++.||+
T Consensus 16 ~~~l~~~e~lr~ia~~Rl~~-P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~ylt~~g~~~~~~d~~~i~~lG~~ 92 (93)
T PF06968_consen 16 PPPLSDEEFLRIIAAFRLLL-PEAGIRLAGGREALLRDLQPLTFMSGANSIMVGGYLTTSGNRSVDEDIEMIEKLGLE 92 (93)
T ss_dssp S----HHHHHHHHHHHHHHS-TTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CSBTSSSCTSHHHHHHHHHHHTT-E
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCcceEeecCccccCHHHHHHHHhcccceeEECCccccCCCCCHHHHHHHHHHcCCC
Confidence 34578888999998666555 445555532111111110000001100111000001122348899999999999985
No 211
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=53.29 E-value=74 Score=25.60 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=26.4
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEEcCCceE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEWFTCNLW 109 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 109 (115)
-|.....+++...|.+.||+.+..+...|.++
T Consensus 160 ~G~~i~~~~l~~~Lv~~gY~r~~~v~~~G~F~ 191 (655)
T TIGR00631 160 VGKEIDRRELLRRLVELQYERNDVDFQRGTFR 191 (655)
T ss_pred CCCCcCHHHHHHHHHHcCCcccCccCCCceEE
Confidence 67788999999999999999988766665543
No 212
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=53.05 E-value=19 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.8
Q ss_pred eCCHHHHHHHHHhCCCCeeEEE
Q 048196 81 KRTKHEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 81 ~rt~~e~~~ll~~aGf~~~~~~ 102 (115)
..+.+++.+.+-+||-+.+...
T Consensus 146 ~~~ed~l~e~~ieagaeDv~~~ 167 (241)
T COG0217 146 EIDEDELLEAAIEAGAEDVEED 167 (241)
T ss_pred CCCHHHHHHHHHHCCchhhhcC
Confidence 3588899888888998776543
No 213
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=52.96 E-value=26 Score=25.62 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=28.8
Q ss_pred ccEEEeccccccCCh--HHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 11 GDAIFMKWILHNWSD--DHCLKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d--~~~~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
.|.+++ .||. +++...|.++...|+|||.|++.-....
T Consensus 77 ~d~~~~-----~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~ 116 (342)
T PRK09489 77 CDTLIY-----YWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRS 116 (342)
T ss_pred CCEEEE-----ECCCCHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Confidence 366554 3553 5688899999999999999999765544
No 214
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=52.82 E-value=19 Score=26.43 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPE 54 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~ 54 (115)
..+||.++.+.|+|||+|+-.-+.+..
T Consensus 267 Q~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 267 QKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 467899999999999999887775543
No 215
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=52.69 E-value=60 Score=24.26 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCCc-ccEEEeccccccCCh--HHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 7 NVPK-GDAIFMKWILHNWSD--DHCLKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 7 ~~p~-~D~v~~~~vlh~~~d--~~~~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
++|. .|+|++. ||. +.....|.++...|+||+.+++.+....
T Consensus 102 ~~~~~~d~vl~~-----~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~k~ 146 (378)
T PRK15001 102 DYPQQPGVVLIK-----VPKTLALLEQQLRALRKVVTSDTRIIAGAKARD 146 (378)
T ss_pred cccCCCCEEEEE-----eCCCHHHHHHHHHHHHhhCCCCCEEEEEEecCC
Confidence 4554 4877765 442 5578899999999999999887776543
No 216
>PLN02672 methionine S-methyltransferase
Probab=52.64 E-value=47 Score=28.47 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhCCCCCEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii 47 (115)
..++++.+.+.|+|||.+++
T Consensus 257 yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 257 IARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred HHHHHHHHHHhccCCCEEEE
Confidence 46777777788888887654
No 217
>PF13592 HTH_33: Winged helix-turn helix
Probab=51.40 E-value=14 Score=19.69 Aligned_cols=27 Identities=22% Similarity=0.087 Sum_probs=21.8
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
-|..+|...+..+|...||.-.+-.+.
T Consensus 18 fgv~ys~~~v~~lL~r~G~s~~kp~~~ 44 (60)
T PF13592_consen 18 FGVKYSPSGVYRLLKRLGFSYQKPRPR 44 (60)
T ss_pred HCCEEcHHHHHHHHHHcCCccccCCCC
Confidence 467789999999999999987665443
No 218
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=50.88 E-value=16 Score=21.02 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=19.9
Q ss_pred ceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196 79 GKKRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
+.+.+..++++.|++.||+++....
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~l~~ 29 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVDLEN 29 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEecCC
Confidence 3456778999999999999887543
No 219
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=50.85 E-value=36 Score=17.73 Aligned_cols=37 Identities=5% Similarity=0.183 Sum_probs=26.0
Q ss_pred cccccCChHHHHHHHHHHHhhCC------CCCEEEEEeeecCC
Q 048196 18 WILHNWSDDHCLKLLKIYYKSIP------EDGKVIVVESILPE 54 (115)
Q Consensus 18 ~vlh~~~d~~~~~iL~~~~~aL~------pgg~lii~d~~~~~ 54 (115)
.++...++++..++++.+.++|. ++...++++.+.++
T Consensus 7 ~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~ 49 (61)
T PRK02220 7 KLIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMSKN 49 (61)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeChh
Confidence 34556789999999999998774 45566665554443
No 220
>PRK06852 aldolase; Validated
Probab=50.69 E-value=16 Score=26.42 Aligned_cols=29 Identities=7% Similarity=0.235 Sum_probs=25.0
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 21 HNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 21 h~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
-+|++++....+.|..+.++..||++|+-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~sGr~~ivp 37 (304)
T PRK06852 9 LDVPEEMREEYIENYLEITKGTGRLMLFA 37 (304)
T ss_pred CcCChhcChhHHHHHHHhhCCCCCEEEEe
Confidence 36888888999999999999999998843
No 221
>PRK00110 hypothetical protein; Validated
Probab=49.99 E-value=36 Score=23.84 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=19.7
Q ss_pred cCChHHHHHHHHHHHh-------------hCCCCCEEEEEeeecCCC
Q 048196 22 NWSDDHCLKLLKIYYK-------------SIPEDGKVIVVESILPEL 55 (115)
Q Consensus 22 ~~~d~~~~~iL~~~~~-------------aL~pgg~lii~d~~~~~~ 55 (115)
.+|-+...+.+++..- ...|||.-+|+|...+..
T Consensus 60 nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~gP~GvaiiVe~lTDN~ 106 (245)
T PRK00110 60 NMPKDNIERAIKKGTGELDGANYEEIRYEGYGPGGVAIIVEALTDNR 106 (245)
T ss_pred CCCHHHHHHHHHHhcCCCCccceEEEEEEEEcCCCeEEEEEEecCCH
Confidence 4555555666665542 123677777777666643
No 222
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=49.78 E-value=9.8 Score=25.45 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~ 48 (115)
....|..+++.|+|||.|.+.
T Consensus 112 ~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 112 NPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp SHHHHHHHHHHEEEEEEEEEE
T ss_pred CchHHHHHHHHcCCCCEEEEE
Confidence 467889999999999999773
No 223
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=48.77 E-value=30 Score=23.88 Aligned_cols=27 Identities=19% Similarity=0.477 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 27 HCLKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 27 ~~~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
.+..+++++.+.++.||.++++|+-.+
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~~ 198 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGYP 198 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCCC
Confidence 478999999999998899999999774
No 224
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.66 E-value=56 Score=19.37 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=28.4
Q ss_pred CceeCCHHHHHHHHHhCCCCeeE----EEEcCCceEEEEEEC
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTR----FEWFTCNLWVRDFYK 115 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~----~~~~~~~~~lie~~~ 115 (115)
-|+.-+++-+.+.+++.||.+.+ ++...+..+.||+.+
T Consensus 8 rGf~~~~dri~~~l~e~g~~v~~eGD~ivas~pgis~ieik~ 49 (96)
T COG4004 8 RGFKPDPDRIMRGLSELGWTVSEEGDRIVASSPGISRIEIKP 49 (96)
T ss_pred cCCCCCHHHHHHHHHHhCeeEeecccEEEEecCCceEEEEec
Confidence 46677889999999999977643 444457788888753
No 225
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=48.48 E-value=18 Score=20.69 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.6
Q ss_pred CCceeCCHHHHHHHHHhCCCCeeEEE
Q 048196 77 PSGKKRTKHEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 77 ~~g~~rt~~e~~~ll~~aGf~~~~~~ 102 (115)
.+.+..+.+++.+.|.+|||...+-+
T Consensus 54 ~GaKH~~q~~Lnq~L~~Ag~~~LK~K 79 (84)
T PF13319_consen 54 IGAKHFDQEELNQRLIDAGWEGLKDK 79 (84)
T ss_pred hccccCCHHHHHHHHHHcCccccchh
Confidence 36778899999999999999876544
No 226
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=48.31 E-value=11 Score=23.92 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=31.0
Q ss_pred hhCCCCCEEEEEeeecCCCCCCc-----------------------hhhhhchhccchhcccCCCceeCCHHHHHHHHH
Q 048196 37 KSIPEDGKVIVVESILPELPETS-----------------------TVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLAT 92 (115)
Q Consensus 37 ~aL~pgg~lii~d~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~ 92 (115)
=+||||-+++|.-.++..++... +. .+.+|-..||...+.|.+-..+++++-+.
T Consensus 7 iSLk~gEki~iNGAVlr~DRkv~lellNdvtfLlEnhVlQpdqaTTPl--RqlYF~aqmmlinp~gaeq~~~~F~~~l~ 83 (148)
T COG5443 7 ISLKPGEKIFINGAVLRVDRKVALELLNDVTFLLENHVLQPDQATTPL--RQLYFIAQMMLINPAGAEQATEMFRKSLN 83 (148)
T ss_pred EeecCCCEEEEeccEEEEeceeEEEeeccchHHHHhccCCccccCChH--HHHHHHHHHHhcCHhhHHHHHHHHHHHHH
Confidence 36788888887765544332110 11 12344455665566787777777766554
No 227
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=48.13 E-value=19 Score=20.10 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=12.4
Q ss_pred CceeCCHHHHHHHHHhCCCCee
Q 048196 78 SGKKRTKHEFLTLATGAGFSGT 99 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~ 99 (115)
+....|.+|+.+.|++.||.+.
T Consensus 16 ~~~i~sQ~eL~~~L~~~Gi~vT 37 (70)
T PF01316_consen 16 EHEISSQEELVELLEEEGIEVT 37 (70)
T ss_dssp HS---SHHHHHHHHHHTT-T--
T ss_pred HCCcCCHHHHHHHHHHcCCCcc
Confidence 3445678888888888888753
No 228
>PRK00536 speE spermidine synthase; Provisional
Probab=46.79 E-value=24 Score=24.98 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=22.7
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
-|+|+.=.. .+ ....+.++++|+|||.++..
T Consensus 140 fDVIIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 140 YDLIICLQE----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCEEEEcCC----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 488775432 22 46778999999999999874
No 229
>PRK12378 hypothetical protein; Provisional
Probab=46.76 E-value=17 Score=25.28 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=19.0
Q ss_pred cCChHHHHHHHHHHHh------------hCCCCCEEEEEeeecCCC
Q 048196 22 NWSDDHCLKLLKIYYK------------SIPEDGKVIVVESILPEL 55 (115)
Q Consensus 22 ~~~d~~~~~iL~~~~~------------aL~pgg~lii~d~~~~~~ 55 (115)
.+|-+...+.+++... ...|||.-+|+|...+..
T Consensus 58 nmPkd~IerAIkk~~g~~~~~~~e~~YEgygPgGvaiiVe~lTDN~ 103 (235)
T PRK12378 58 NVPKDVIERAIKKAKGGGGEDYEEVRYEGFGPNGVMVIVECLTDNV 103 (235)
T ss_pred CCCHHHHHHHHHhccCCCCCceEEEEEEEEcCCCcEEEEEECCCCH
Confidence 4555555555555431 223777777777665543
No 230
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=46.69 E-value=32 Score=23.82 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEE
Q 048196 26 DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 26 ~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 102 (115)
+...-.|.+..+.|++.|.|.|.+--.-+..-. .+.....+-. . -..+.....++++.|.+.|..++++.
T Consensus 72 E~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv---~rv~~~~~~~---~-~~~~~~~I~~FEr~L~~~G~~IlKff 141 (230)
T TIGR03707 72 ERTQWYFQRYVQHLPAAGEIVLFDRSWYNRAGV---ERVMGFCTDE---E-YEEFLRQVPEFERMLVRDGIHLFKYW 141 (230)
T ss_pred HHcChHHHHHHHhCCCCCeEEEEeCchhhhHHH---HHhcCCCCHH---H-HHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 336678889999999999998887544433110 0000000000 0 01222345688999999998888763
No 231
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=46.47 E-value=28 Score=18.87 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.0
Q ss_pred ceeCCHHHHHHHHHhCCCCee
Q 048196 79 GKKRTKHEFLTLATGAGFSGT 99 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~ 99 (115)
|...+.+++.++|+..||+..
T Consensus 16 G~~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 16 GLDLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred CCCCCHHHHHHHHHHCCCeEE
Confidence 456789999999999999874
No 232
>PRK04280 arginine repressor; Provisional
Probab=46.27 E-value=21 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=17.0
Q ss_pred CceeCCHHHHHHHHHhCCCCeeE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~ 100 (115)
+-...|.+|+.++|++.||.+.+
T Consensus 15 ~~~I~tQeeL~~~L~~~Gi~vTQ 37 (148)
T PRK04280 15 NNEIETQDELVDRLREEGFNVTQ 37 (148)
T ss_pred hCCCCCHHHHHHHHHHcCCCeeh
Confidence 44557788888888888887543
No 233
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=46.03 E-value=53 Score=25.45 Aligned_cols=53 Identities=25% Similarity=0.249 Sum_probs=38.0
Q ss_pred CCCC-CCCc--ccEEEeccccccCChHH--------HHHHHHHHHhhCCCCCEEEEEeee--cCCC
Q 048196 3 DMFQ-NVPK--GDAIFMKWILHNWSDDH--------CLKLLKIYYKSIPEDGKVIVVESI--LPEL 55 (115)
Q Consensus 3 d~~~-~~p~--~D~v~~~~vlh~~~d~~--------~~~iL~~~~~aL~pgg~lii~d~~--~~~~ 55 (115)
|+.. .++. .|+++....+|++-.++ ....+..+++.|+|||+.+.+-.. .+..
T Consensus 104 d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 104 DMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred cchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 4555 5664 39999999888654322 345688999999999999998874 4544
No 234
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=46.00 E-value=48 Score=20.22 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHhhCCC----CCEEEEEee
Q 048196 23 WSDDHCLKLLKIYYKSIPE----DGKVIVVES 50 (115)
Q Consensus 23 ~~d~~~~~iL~~~~~aL~p----gg~lii~d~ 50 (115)
.+|++..++++.+.++.+. +|++++.+.
T Consensus 65 v~de~ve~vv~~I~~~a~TG~~GDGkIfV~pV 96 (112)
T PRK10665 65 IADDQLDEVIDIISKAAYTGKIGDGKIFVAEL 96 (112)
T ss_pred EChHhHHHHHHHHHHHhccCCCCCcEEEEEEh
Confidence 5688888888888888754 499999764
No 235
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.81 E-value=40 Score=22.52 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=27.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii 47 (115)
.|.|+...++ |=|+-...+.+.|+.-|+|.|+-++
T Consensus 104 FDiIlaADCl--FfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 104 FDIILAADCL--FFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ccEEEeccch--hHHHHHHHHHHHHHHHhCcccceeE
Confidence 4999999888 4566667788888899999888555
No 236
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=45.57 E-value=54 Score=24.11 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=34.8
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
.|-|.+..+-.-++|.+...++.++.+-+.||.++|.-
T Consensus 328 Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifR 365 (414)
T COG5379 328 VDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFR 365 (414)
T ss_pred cceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEe
Confidence 39999999998899999999999999999999998774
No 237
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=45.34 E-value=25 Score=20.77 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHHHhhCCC---C-CEEEEEee
Q 048196 23 WSDDHCLKLLKIYYKSIPE---D-GKVIVVES 50 (115)
Q Consensus 23 ~~d~~~~~iL~~~~~aL~p---g-g~lii~d~ 50 (115)
.+|++..++++.+.+++.. | |++++.+.
T Consensus 62 v~d~~v~~iv~~I~~~~~tg~~GdGkIfV~~V 93 (102)
T PF00543_consen 62 VPDEDVEEIVEAISEAARTGEPGDGKIFVSPV 93 (102)
T ss_dssp EEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEE
T ss_pred ECHHhHHHHHHHHHHhccCCCCCCEEEEEEEh
Confidence 4566778888888877654 3 89998774
No 238
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=45.33 E-value=34 Score=18.43 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCCeeEEEEcCCceEE
Q 048196 84 KHEFLTLATGAGFSGTRFEWFTCNLWV 110 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~~~~~~~~~~~~l 110 (115)
..++..|+++.|++...+...++.+.+
T Consensus 40 ~~di~~~~~~~g~~~~~~~~~~~~~~i 66 (70)
T PF01206_consen 40 VEDIPRWCEENGYEVVEVEEEGGEYRI 66 (70)
T ss_dssp HHHHHHHHHHHTEEEEEEEESSSSEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCEEEE
Confidence 468889999999988887775444433
No 239
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=44.20 E-value=52 Score=17.84 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 24 SDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 24 ~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+..+....+-+..++|+||..+.++.
T Consensus 8 ~~~~p~~~il~~~~~L~~Ge~l~lv~ 33 (69)
T PF10006_consen 8 PPPEPHERILEALDELPPGETLELVN 33 (69)
T ss_pred CCcChHHHHHHHHHcCCCCCEEEEEe
Confidence 44445556666677899998887744
No 240
>PLN02823 spermine synthase
Probab=44.02 E-value=30 Score=25.37 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=16.4
Q ss_pred HHHHH-HHHhhCCCCCEEEEE
Q 048196 29 LKLLK-IYYKSIPEDGKVIVV 48 (115)
Q Consensus 29 ~~iL~-~~~~aL~pgg~lii~ 48 (115)
.+.++ .+++.|+|||.+++.
T Consensus 199 ~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 199 KSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred HHHHHHHHHHhcCCCcEEEEe
Confidence 46777 889999999988764
No 241
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=43.62 E-value=14 Score=25.71 Aligned_cols=22 Identities=9% Similarity=0.323 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhCCCCCEEEEEe
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d 49 (115)
..+.++.++++|+|||.+++.-
T Consensus 170 t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 170 TREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHhhcCCCcEEEEEc
Confidence 3689999999999999998865
No 242
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=43.44 E-value=32 Score=24.56 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~ 48 (115)
....++.|+++|+++|.++..
T Consensus 169 t~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 169 TEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CHHHHHHHHHhcCCCcEEEEe
Confidence 368999999999999999886
No 243
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=43.30 E-value=53 Score=17.55 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCCeeEEEEcCCceEEEEEE
Q 048196 84 KHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~ 114 (115)
...+.+++++.|++. .+....+ ...+..+
T Consensus 38 ~~~i~~~~~~~G~~~-~~~~~~~-~~~i~I~ 66 (67)
T cd03421 38 KENVSRFAESRGYEV-SVEEKGG-EFEITIT 66 (67)
T ss_pred HHHHHHHHHHcCCEE-EEEecCC-EEEEEEE
Confidence 357888888999988 5555544 4444444
No 244
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=43.21 E-value=34 Score=23.61 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~ 48 (115)
....|+.+.+.|+|||.|.+.
T Consensus 143 ~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 143 QPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CHHHHHHHHHHccCCCEEEEE
Confidence 457889999999999999874
No 245
>COG1438 ArgR Arginine repressor [Transcription]
Probab=43.16 E-value=23 Score=22.94 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=14.3
Q ss_pred CceeCCHHHHHHHHHhCCCCee
Q 048196 78 SGKKRTKHEFLTLATGAGFSGT 99 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~ 99 (115)
.-+..|++|+.++|++.||++.
T Consensus 17 ~~~i~TQ~Elv~~L~~~Gi~vT 38 (150)
T COG1438 17 EEKISTQEELVELLQEEGIEVT 38 (150)
T ss_pred hCCCCCHHHHHHHHHHcCCeEe
Confidence 3445677777777777777643
No 246
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=43.02 E-value=40 Score=23.22 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=26.5
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE 54 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~ 54 (115)
|++|+ |-...+-...+..+.+.|+|||.+++ |.+...
T Consensus 134 DliFI-----DadK~~yp~~le~~~~lLr~GGliv~-DNvl~~ 170 (219)
T COG4122 134 DLVFI-----DADKADYPEYLERALPLLRPGGLIVA-DNVLFG 170 (219)
T ss_pred cEEEE-----eCChhhCHHHHHHHHHHhCCCcEEEE-eecccC
Confidence 76664 44455678899999999999988766 544443
No 247
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=42.48 E-value=53 Score=22.64 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=30.6
Q ss_pred CEEEEEeeecCCCCCCchh---hhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeE
Q 048196 43 GKVIVVESILPELPETSTV---SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 43 g~lii~d~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 100 (115)
+.+++.+.-.+....++.. .+.....++... .+|..+|.+++.++++ .|..-+-
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi---~~GGi~s~edi~~l~~-~G~~~vi 219 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVI---ASGGIRHQQDIQRLAS-LNVHAAI 219 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHHhCCCCEE---EeCCCCCHHHHHHHHH-cCCCEEE
Confidence 5777777655544333221 122222222222 3788899999999985 7876543
No 248
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=42.37 E-value=43 Score=23.76 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 102 (115)
..-.|.+..+.|++.|.|.|.+--.-+..-. .+.....+-. . -..+......|++.|.+.|..++++.
T Consensus 99 ~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~---~rv~g~~~~~---~-~~~~~~~I~~FEr~L~~~G~~IiKff 166 (264)
T TIGR03709 99 DHDFLWRIHKALPERGEIGIFNRSHYEDVLV---VRVHGLIPKA---I-WERRYEDINDFERYLTENGTTILKFF 166 (264)
T ss_pred cCchHHHHHHhCCCCCeEEEEcCccccchhh---hhhcCCCCHH---H-HHHHHHHHHHHHHHHHHCCcEEEEEE
Confidence 5567888888898888888887644443211 0000000000 0 01233456688999999998888763
No 249
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=42.35 E-value=48 Score=24.02 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=27.7
Q ss_pred ccEEEeccccccCC--hHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196 11 GDAIFMKWILHNWS--DDHCLKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 11 ~D~v~~~~vlh~~~--d~~~~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
+|++++. || ..+....|.++.+.++|||.|+++-...
T Consensus 38 ~d~~l~~-----~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~ 76 (300)
T COG2813 38 FDAVLLY-----WPKHKAEAEFQLAQLLARLPPGGEIVVVGEKR 76 (300)
T ss_pred CCEEEEE-----ccCchHHHHHHHHHHHhhCCCCCeEEEEeccc
Confidence 3666554 55 3567889999999999999999965433
No 250
>PRK06132 hypothetical protein; Provisional
Probab=42.10 E-value=29 Score=25.80 Aligned_cols=24 Identities=0% Similarity=0.073 Sum_probs=21.1
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
.++.+++...|.||+.|+|.|.-.
T Consensus 321 ~~~~~~i~~~l~~gssl~vsD~~~ 344 (359)
T PRK06132 321 PDFRRRIAALLTPGSTLVITDQGI 344 (359)
T ss_pred HHHHHHHHHhcCCCceEEEcCCCC
Confidence 478899999999999999999755
No 251
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=42.03 E-value=46 Score=21.03 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=30.5
Q ss_pred cEEEeccccc--cCChHHHHHHHHHHHhhCCC-CCEEEEEee
Q 048196 12 DAIFMKWILH--NWSDDHCLKLLKIYYKSIPE-DGKVIVVES 50 (115)
Q Consensus 12 D~v~~~~vlh--~~~d~~~~~iL~~~~~aL~p-gg~lii~d~ 50 (115)
.++|++.+=+ ..++..-..++..+.+-|+. ++.++++|.
T Consensus 42 ~viWlT~~~~~~~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~ 83 (136)
T PF05763_consen 42 PVIWLTKVEGENAISPTNLHKLLDTIVRFLKENGNGVVIIDG 83 (136)
T ss_pred cEEEEeccCCCCccCchhhHHHHHHHHHHHHhCCCcEEEEec
Confidence 5999998865 56666677888888888887 667888885
No 252
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=41.76 E-value=4.3 Score=28.38 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=28.2
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhC-CCCCEEEEEeeecCC
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSI-PEDGKVIVVESILPE 54 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL-~pgg~lii~d~~~~~ 54 (115)
.|++++ |+|++ -..+.++.++| +|||++.+.-+++++
T Consensus 114 ~DavfL-----Dlp~P--w~~i~~~~~~L~~~gG~i~~fsP~ieQ 151 (247)
T PF08704_consen 114 FDAVFL-----DLPDP--WEAIPHAKRALKKPGGRICCFSPCIEQ 151 (247)
T ss_dssp EEEEEE-----ESSSG--GGGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred ccEEEE-----eCCCH--HHHHHHHHHHHhcCCceEEEECCCHHH
Confidence 476653 77775 57889999999 899999997665553
No 253
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=41.23 E-value=22 Score=20.79 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCCCeeEE
Q 048196 84 KHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~~~~ 101 (115)
+.|+.++|.+.||.+++.
T Consensus 3 Erel~~~L~~~Gf~v~R~ 20 (88)
T PF01870_consen 3 ERELVKILWERGFAVVRA 20 (88)
T ss_dssp HHHHHHHHHHTT-EEEEB
T ss_pred HHHHHHHHHhCCcEEEEe
Confidence 458999999999988763
No 254
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=41.20 E-value=17 Score=16.12 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=8.7
Q ss_pred CCCCEEEEEee
Q 048196 40 PEDGKVIVVES 50 (115)
Q Consensus 40 ~pgg~lii~d~ 50 (115)
.++|.|+|.|.
T Consensus 10 ~~~g~i~VaD~ 20 (28)
T PF01436_consen 10 DSDGNIYVADS 20 (28)
T ss_dssp ETTSEEEEEEC
T ss_pred eCCCCEEEEEC
Confidence 47899999883
No 255
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=41.01 E-value=35 Score=23.78 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHhCCCCee
Q 048196 82 RTKHEFLTLATGAGFSGT 99 (115)
Q Consensus 82 rt~~e~~~ll~~aGf~~~ 99 (115)
-+..+|...|+++||++.
T Consensus 216 ddedswk~il~~~G~~v~ 233 (265)
T COG4822 216 DDEDSWKNILEKNGFKVE 233 (265)
T ss_pred cchHHHHHHHHhCCceeE
Confidence 356899999999999883
No 256
>PRK13605 endoribonuclease SymE; Provisional
Probab=40.94 E-value=14 Score=22.73 Aligned_cols=13 Identities=23% Similarity=0.228 Sum_probs=10.4
Q ss_pred HHHHHhCCCCeeE
Q 048196 88 LTLATGAGFSGTR 100 (115)
Q Consensus 88 ~~ll~~aGf~~~~ 100 (115)
-.||++|||..-.
T Consensus 44 G~WLeeAGF~tG~ 56 (113)
T PRK13605 44 GQWLEAAGFATGT 56 (113)
T ss_pred chhHHhhCCCCCC
Confidence 4789999998643
No 257
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=40.82 E-value=31 Score=25.18 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=24.9
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRD 112 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie 112 (115)
+-..+|..++..+|+.+||..+ ....+...++|
T Consensus 92 hLFiyTKp~~~~lFk~~GF~~i--~~~~~~ivlmE 124 (352)
T COG3053 92 HLFIYTKPEYAALFKQCGFSEI--ASAENVIVLME 124 (352)
T ss_pred eEEEEechhHHHHHHhCCceEe--eccCceEEEee
Confidence 4467899999999999999765 34455556665
No 258
>PF15585 Imm46: Immunity protein 46
Probab=40.58 E-value=72 Score=20.15 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=24.7
Q ss_pred ccEEEeccccccCCh---HHHHHHHHHHHhhCCCC--CEEEEEee
Q 048196 11 GDAIFMKWILHNWSD---DHCLKLLKIYYKSIPED--GKVIVVES 50 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d---~~~~~iL~~~~~aL~pg--g~lii~d~ 50 (115)
+..++-...+++..- ++.+.+++++.+ +.|| |.|++.|-
T Consensus 50 G~~~l~~~g~~NHr~~~~~eii~lf~~i~e-~aPGSYGlLy~rDD 93 (129)
T PF15585_consen 50 GSYFLHFGGLSNHRGQEAPEIIELFERIAE-IAPGSYGLLYIRDD 93 (129)
T ss_pred CcEEEEEccccCCCccchHHHHHHHHHHHH-hCCCceeEEEEecC
Confidence 444444445555544 448888899888 4666 77887653
No 259
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.40 E-value=75 Score=24.42 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=36.4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
|+++.=-.=.+.-|++-..=+++++++++|.-.|+++|....++
T Consensus 184 DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 184 DVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred CEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 77777665555557777888899999999999999999988865
No 260
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=40.37 E-value=83 Score=22.44 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC---ceeCCHHHHHHHHHhCCCCeeEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS---GKKRTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---g~~rt~~e~~~ll~~aGf~~~~~ 101 (115)
..--+++..+.|+.+|.++|.|--.-+.... ++ .++ .++.. -..+...+++++|.+.|-.++++
T Consensus 117 ~qwY~qRy~~~lPa~GeiviFdRSwYnr~gV---eR---VmG----fct~~q~~rfl~eip~FE~mL~~~Gi~l~Kf 183 (270)
T COG2326 117 GQWYFQRYVAHLPAAGEIVIFDRSWYNRAGV---ER---VMG----FCTPKQYKRFLREIPEFERMLVESGIILVKF 183 (270)
T ss_pred ccHHHHHHHHhCCCCCeEEEechhhccccCe---ee---ccc----cCCHHHHHHHHHHhhHHHHHHHhCCeEEEEE
Confidence 5667889999999999999988655543221 11 011 01111 12345668999999999777665
No 261
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=40.25 E-value=33 Score=18.80 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=15.7
Q ss_pred ceeCCHHHHHHHHHhCCCCeeE
Q 048196 79 GKKRTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~~ 100 (115)
|...+.++..++|+..||+...
T Consensus 16 G~~i~~~~i~~~L~~lg~~~~~ 37 (70)
T PF03484_consen 16 GIDISPEEIIKILKRLGFKVEK 37 (70)
T ss_dssp TS---HHHHHHHHHHTT-EEEE
T ss_pred CCCCCHHHHHHHHHHCCCEEEE
Confidence 4567899999999999998865
No 262
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=40.20 E-value=35 Score=19.38 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHhhCCCC-CEEEEEe
Q 048196 25 DDHCLKLLKIYYKSIPED-GKVIVVE 49 (115)
Q Consensus 25 d~~~~~iL~~~~~aL~pg-g~lii~d 49 (115)
+....++.+.+.+||..+ |.|-+.|
T Consensus 19 ~~s~dev~~~v~~Al~~~~~~l~LtD 44 (74)
T PF11305_consen 19 DQSADEVEAAVTDALADGSGVLTLTD 44 (74)
T ss_pred CCCHHHHHHHHHHHHhCCCceEEEEe
Confidence 344678899999999998 7776655
No 263
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=40.08 E-value=1e+02 Score=20.16 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=9.7
Q ss_pred cEEEeccccccCChHHHHHHHHHH
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIY 35 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~ 35 (115)
+++++-.-.-.++.+....+++.+
T Consensus 109 ~llLlDEPt~~LD~~~~~~l~~~l 132 (176)
T cd03238 109 TLFILDEPSTGLHQQDINQLLEVI 132 (176)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH
Confidence 344444444444444333333333
No 264
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=39.67 E-value=48 Score=22.15 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=35.5
Q ss_pred hhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 37 KSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 37 ~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
.++++|-+++|+|-+......-....+............. ---+++...+++.+.+.|+....+.+.
T Consensus 112 ~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~-~lvd~~~~~g~~~l~~~g~~~~sl~~~ 178 (189)
T PRK09219 112 KFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIG-IVIEKSFQDGRKLLEEKGYRVESLARI 178 (189)
T ss_pred hhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEE-EEEEccCccHHHHHHhcCCcEEEEEEe
Confidence 3678999999999888866432111000000010000000 001344446788888889887776655
No 265
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=39.60 E-value=27 Score=21.90 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=19.9
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEE
Q 048196 18 WILHNWSDDHCLKLLKIYYKSIPEDGKV 45 (115)
Q Consensus 18 ~vlh~~~d~~~~~iL~~~~~aL~pgg~l 45 (115)
--|||.-......|...++++|..|..+
T Consensus 12 GHLHHiEPKRVKvIVeEv~qaltegklL 39 (149)
T PF03574_consen 12 GHLHHIEPKRVKVIVEEVRQALTEGKLL 39 (149)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHSSS---
T ss_pred ccccccCchhhhhHHHHHHHHHhhhhHH
Confidence 3478998888888889999999998765
No 266
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=39.46 E-value=98 Score=19.50 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC--------------CC--chhhhhchhccchhcccCCCceeCCHHH
Q 048196 23 WSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP--------------ET--STVSKRNSQLDVLMMTQNPSGKKRTKHE 86 (115)
Q Consensus 23 ~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~--------------~~--~~~~~~~~~~~l~~~~~~~~g~~rt~~e 86 (115)
++.+++..+|.+....|..-|.-++.-.-+.... .. ...+ .....++.--+. .|+..-|.+|
T Consensus 11 L~~~ea~~FL~~~~~~L~~~Gi~V~lP~~w~~~~~~~l~l~~~~~~~~~~~~~~lg-l~~l~~f~W~la-lGd~~Ls~eE 88 (141)
T PF12419_consen 11 LTTEEAYDFLTEAAPRLRAAGIGVLLPSWWKKVRRPRLRLRAKATSPGGSSQSFLG-LDQLLDFDWELA-LGDEELSEEE 88 (141)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCeEEcCHHHhhccCCCcEEEEEeccCCCCCCCccC-hHHHhcceEEEE-ECCEECCHHH
Confidence 6788899999998888876665554432221110 00 0000 111222222222 3888999999
Q ss_pred HHHHHHhCCCCeeE
Q 048196 87 FLTLATGAGFSGTR 100 (115)
Q Consensus 87 ~~~ll~~aGf~~~~ 100 (115)
+.+|+++.. ..++
T Consensus 89 f~~L~~~~~-~LV~ 101 (141)
T PF12419_consen 89 FEQLVEQKR-PLVR 101 (141)
T ss_pred HHHHHHcCC-CeEE
Confidence 999999765 4444
No 267
>PRK15450 signal transduction protein PmrD; Provisional
Probab=39.39 E-value=23 Score=20.42 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.4
Q ss_pred CceeCCHHHHHHHHHhCC
Q 048196 78 SGKKRTKHEFLTLATGAG 95 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aG 95 (115)
+++.|+.+||.++.+.+|
T Consensus 68 ~As~Ys~deW~r~~~~~~ 85 (85)
T PRK15450 68 SASCYSPDEWERQCKKAG 85 (85)
T ss_pred eccccCHHHHHHHhccCC
Confidence 678899999999987765
No 268
>PRK03094 hypothetical protein; Provisional
Probab=39.39 E-value=35 Score=19.67 Aligned_cols=25 Identities=8% Similarity=0.181 Sum_probs=20.3
Q ss_pred ceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196 79 GKKRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 79 g~~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
+.+.++..+++.|++.||+++.+..
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCc
Confidence 4456788999999999999987644
No 269
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=39.37 E-value=13 Score=26.41 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhC----CCCCEEEEEeeecC
Q 048196 28 CLKLLKIYYKSI----PEDGKVIVVESILP 53 (115)
Q Consensus 28 ~~~iL~~~~~aL----~pgg~lii~d~~~~ 53 (115)
..++|+++.+.+ +|||+++-.-+-+.
T Consensus 194 Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 194 QREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred HHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 578999999999 99999988776444
No 270
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=39.28 E-value=59 Score=21.23 Aligned_cols=31 Identities=6% Similarity=0.167 Sum_probs=22.2
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 19 ILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 19 vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
--.+|......++.+++.+.++||+.+++.|
T Consensus 129 ~~~D~~~~~~~~i~~~~~~~~~~g~Iil~Hd 159 (191)
T TIGR02764 129 DSRDWKNPGVESIVDRVVKNTKPGDIILLHA 159 (191)
T ss_pred CCCccCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 3446665556788888888899987666655
No 271
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=39.21 E-value=38 Score=17.04 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHhCCCCe
Q 048196 82 RTKHEFLTLATGAGFSG 98 (115)
Q Consensus 82 rt~~e~~~ll~~aGf~~ 98 (115)
.+.+++.++.+++||..
T Consensus 27 ~~~~e~~~lA~~~Gy~f 43 (49)
T PF07862_consen 27 QNPEEVVALAREAGYDF 43 (49)
T ss_pred CCHHHHHHHHHHcCCCC
Confidence 47899999999999875
No 272
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.90 E-value=38 Score=28.69 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=44.4
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCCCCEEEE--EeeecCCCCCC-c----h--hhh-hchhccchhcccCCCceeCCH
Q 048196 15 FMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV--VESILPELPET-S----T--VSK-RNSQLDVLMMTQNPSGKKRTK 84 (115)
Q Consensus 15 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii--~d~~~~~~~~~-~----~--~~~-~~~~~~l~~~~~~~~g~~rt~ 84 (115)
+++...||+..++...+|.. .+|+.++= +|.+.++.... + + ..| ...-.|-+++ +++.-|.
T Consensus 48 VLSDey~hLk~E~R~gLlHE-----GsG~~V~sA~VEIvF~nsdnr~~~~k~Ev~lrRtVGlKKDeY~l----D~k~Vtk 118 (1200)
T KOG0964|consen 48 VLSDEYSHLKREERQGLLHE-----GSGAMVMSASVEIVFDNSDNRLPRGKSEVSLRRTVGLKKDEYFL----DNKMVTK 118 (1200)
T ss_pred hcccchhhcCHHHHhhhhhc-----CCCcceEEEEEEEEEeCcccccCCCCCeEEEEEeecccchhhhc----ccccccH
Confidence 45667778888887777764 34544432 33333332111 0 0 000 1122233322 7788899
Q ss_pred HHHHHHHHhCCCCeeE
Q 048196 85 HEFLTLATGAGFSGTR 100 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~ 100 (115)
.|+..||+.|||..-.
T Consensus 119 ~evvnLLESAGFSrsN 134 (1200)
T KOG0964|consen 119 GEVVNLLESAGFSRSN 134 (1200)
T ss_pred HHHHHHHHhcCcccCC
Confidence 9999999999998753
No 273
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=38.42 E-value=19 Score=21.56 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeec
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
...++...+.|+|+|+++++-...
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 468888889999999999987655
No 274
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=38.28 E-value=73 Score=21.92 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=25.7
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCC-CCEEEEEee
Q 048196 10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPE-DGKVIVVES 50 (115)
Q Consensus 10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p-gg~lii~d~ 50 (115)
..|+++.+.++.+.+. +.++++ ....|+. |..++|.|+
T Consensus 142 ~~Dl~LagDlfy~~~~--a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 142 AFDLLLAGDLFYNHTE--ADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred ceeEEEeeceecCchH--HHHHHH-HHHHHHhCCCEEEEeCC
Confidence 3599999999965554 567777 5555555 555665544
No 275
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=38.15 E-value=35 Score=20.36 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCCCCeeE
Q 048196 84 KHEFLTLATGAGFSGTR 100 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~~~ 100 (115)
.+.|++.|+++||++.-
T Consensus 81 ~~SW~~~l~~~g~~v~~ 97 (103)
T cd03413 81 PDSWKSILEAAGIKVET 97 (103)
T ss_pred chhHHHHHHHCCCeeEE
Confidence 45899999999998753
No 276
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.78 E-value=42 Score=17.78 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.7
Q ss_pred ccccCChHHHHHHHHHHHhh
Q 048196 19 ILHNWSDDHCLKLLKIYYKS 38 (115)
Q Consensus 19 vlh~~~d~~~~~iL~~~~~a 38 (115)
+++++++++..++|+.+++.
T Consensus 5 l~~g~~~~el~~~l~~~r~~ 24 (58)
T PF12646_consen 5 LFSGFSGEELDKFLDALRKA 24 (58)
T ss_pred EECCCCHHHHHHHHHHHHHc
Confidence 57889999999999998886
No 277
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=37.33 E-value=1.7e+02 Score=21.74 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=44.9
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhh--hhchhccchhcc--cCCCceeCCHHHHHHHH--
Q 048196 18 WILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS--KRNSQLDVLMMT--QNPSGKKRTKHEFLTLA-- 91 (115)
Q Consensus 18 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~--~~~~~~~l~~~~--~~~~g~~rt~~e~~~ll-- 91 (115)
+..--|+|++ +.-++++.++....|..+++...-.......... ......+..-.. ....-++-|.+|+.++.
T Consensus 72 ~~~~l~~d~~-i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~ 150 (363)
T COG1902 72 GQPGLWSDAQ-IPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIED 150 (363)
T ss_pred CCCccCChhH-hHHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHH
Confidence 3444466665 8889999999987544444454333211000000 000000000000 01234667888777654
Q ss_pred --------HhCCCCeeEEEEcC
Q 048196 92 --------TGAGFSGTRFEWFT 105 (115)
Q Consensus 92 --------~~aGf~~~~~~~~~ 105 (115)
++|||..++++--.
T Consensus 151 f~~AA~rA~~AGFDgVEIH~Ah 172 (363)
T COG1902 151 FARAARRAKEAGFDGVEIHGAH 172 (363)
T ss_pred HHHHHHHHHHcCCCEEEEeecc
Confidence 46899999988653
No 278
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=36.49 E-value=76 Score=22.83 Aligned_cols=45 Identities=7% Similarity=0.119 Sum_probs=27.1
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC
Q 048196 10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP 56 (115)
Q Consensus 10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~ 56 (115)
+.|+++..+.=..-.-....++++++++. .|. .++++|+++.+..
T Consensus 73 ~~davltGYlgs~~qv~~i~~~v~~vk~~-~P~-~~~l~DPVMGD~g 117 (281)
T COG2240 73 ECDAVLTGYLGSAEQVRAIAGIVKAVKEA-NPN-ALYLCDPVMGDPG 117 (281)
T ss_pred ccCEEEEccCCCHHHHHHHHHHHHHHhcc-CCC-eEEEeCCcccCCC
Confidence 35888877654322222234444555444 455 6788999998875
No 279
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.06 E-value=1.5e+02 Score=21.92 Aligned_cols=86 Identities=12% Similarity=-0.016 Sum_probs=53.5
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce--eCCHHHHHHH
Q 048196 13 AIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK--KRTKHEFLTL 90 (115)
Q Consensus 13 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~--~rt~~e~~~l 90 (115)
+++.--+|-+++.+++..+++-+.+.. +.+-+++.|.+.+.++-+.. .. +.+..... . ..|- --|.+..++=
T Consensus 191 i~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~Fg~v-M~-~nlk~r~~--~-L~gle~y~s~Esq~~R 264 (335)
T KOG2918|consen 191 IFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDRFGKV-ML-ANLKRRGC--P-LHGLETYNSIESQRSR 264 (335)
T ss_pred eehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCChHHHH-HH-HHHHhcCC--C-CchhhhcccHHHHHHH
Confidence 344446888999999999999988765 46677888988866543210 00 00000000 0 1222 2367788888
Q ss_pred HHhCCCCeeEEEEc
Q 048196 91 ATGAGFSGTRFEWF 104 (115)
Q Consensus 91 l~~aGf~~~~~~~~ 104 (115)
|.++||+-+.+..+
T Consensus 265 f~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 265 FLKAGWEYVIAVDM 278 (335)
T ss_pred HHhcCCceeehhhH
Confidence 88999998876543
No 280
>PF15603 Imm45: Immunity protein 45
Probab=35.81 E-value=77 Score=18.31 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=29.7
Q ss_pred ccEEEeccccccC---------ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 11 GDAIFMKWILHNW---------SDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 11 ~D~v~~~~vlh~~---------~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+|.++..+-+-+| ++.+..+|++.+.+.+...|.-+..|
T Consensus 35 ~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~~v~fE 82 (82)
T PF15603_consen 35 GDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGMTVDFE 82 (82)
T ss_pred cCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCceEEEeC
Confidence 5777777777644 56678999999999998888776654
No 281
>PRK05066 arginine repressor; Provisional
Probab=35.66 E-value=30 Score=22.45 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=15.1
Q ss_pred CceeCCHHHHHHHHHhCCCC
Q 048196 78 SGKKRTKHEFLTLATGAGFS 97 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~ 97 (115)
+....|.+|+.+.|++.||.
T Consensus 20 ~~~I~tQeeL~~~L~~~Gi~ 39 (156)
T PRK05066 20 EEKFGSQGEIVTALQEQGFD 39 (156)
T ss_pred hCCCCCHHHHHHHHHHCCCC
Confidence 45567788888888888887
No 282
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.41 E-value=39 Score=18.81 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 25 DDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 25 d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
|....+++-++-+++.+|++++|-+
T Consensus 13 Dp~~kqlilnmd~sm~~~skfii~e 37 (71)
T KOG3451|consen 13 DPAFKQLILNMDDSMQLGSKFIIEE 37 (71)
T ss_pred ChhHHHHhhhccccCCCCCCeeEEE
Confidence 4456788888889999999998855
No 283
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=35.24 E-value=66 Score=21.49 Aligned_cols=67 Identities=6% Similarity=0.067 Sum_probs=35.2
Q ss_pred hhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 37 KSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 37 ~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
.++++|.+++|+|-+...........+............ .---.|....+++.+++.|.....+...
T Consensus 112 ~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv-~~lvd~~~~~g~~~l~~~gvpv~sL~~~ 178 (191)
T TIGR01744 112 EFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGI-GIVIEKSFQNGRQELVELGYRVESLARI 178 (191)
T ss_pred HhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEE-EEEEEecCccHHHHHHhcCCcEEEEEEE
Confidence 357899999999998887643211111100001000000 0002344445777888888877766554
No 284
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=35.19 E-value=61 Score=17.96 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHhCCCCeeEE
Q 048196 82 RTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 82 rt~~e~~~ll~~aGf~~~~~ 101 (115)
-+..|+.+.|+.-||..++.
T Consensus 7 ~~~ke~ik~Le~~Gf~~vrq 26 (66)
T COG1724 7 MKAKEVIKALEKDGFQLVRQ 26 (66)
T ss_pred CCHHHHHHHHHhCCcEEEEe
Confidence 35679999999999998875
No 285
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=34.98 E-value=77 Score=17.00 Aligned_cols=10 Identities=0% Similarity=0.335 Sum_probs=6.1
Q ss_pred CCCCCEEEEE
Q 048196 39 IPEDGKVIVV 48 (115)
Q Consensus 39 L~pgg~lii~ 48 (115)
+..||+++|.
T Consensus 60 v~~G~~lvl~ 69 (70)
T PF14258_consen 60 VEAGNTLVLA 69 (70)
T ss_pred HHcCCEEEEe
Confidence 3357777765
No 286
>PRK09213 pur operon repressor; Provisional
Probab=34.83 E-value=1.3e+02 Score=21.47 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=16.2
Q ss_pred hhCCCCCEEEEEeeecCCCC
Q 048196 37 KSIPEDGKVIVVESILPELP 56 (115)
Q Consensus 37 ~aL~pgg~lii~d~~~~~~~ 56 (115)
++|++|.+++|+|-++....
T Consensus 191 ~~l~~G~rVLIVDDv~~TGg 210 (271)
T PRK09213 191 RSLKEGSRVLIVDDFMKAGG 210 (271)
T ss_pred hhcCCcCEEEEEeeecccCH
Confidence 57889999999998877654
No 287
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=34.79 E-value=1.4e+02 Score=20.44 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=26.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCC-CCEEEEEeeecCCC
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPE-DGKVIVVESILPEL 55 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p-gg~lii~d~~~~~~ 55 (115)
||+.+...+...........+++.+.+.|+. +=.+.-.|..+.+.
T Consensus 6 GDi~~~~~~~~~~~~~~~~~~~~~v~~~l~~aD~~~~NlE~~v~~~ 51 (250)
T PF09587_consen 6 GDIMLGRGVYQRAEKGGFDYIFEDVKPLLQSADLVVANLETPVTDS 51 (250)
T ss_pred eccccCcchhhhcccCChHHHHHHHHHHHhhCCEEEEEeeecCcCC
Confidence 3555554444443322456777888877766 55566677766443
No 288
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=34.75 E-value=21 Score=20.99 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHh
Q 048196 27 HCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATG 93 (115)
Q Consensus 27 ~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~ 93 (115)
++..+|+-+.+.=..=|.-.++|.+........ ....+.-+-..+-|+..+..+|++++.+
T Consensus 5 ~a~~il~~V~~~~~~~~~~~ivdvlrGs~~~~i------~~~~~~~l~~yG~gk~~~~~~~~~li~~ 65 (106)
T PF09382_consen 5 EAKKILSCVQRLKQRFGLSQIVDVLRGSKSKKI------REKGHDQLPTYGIGKDMSKDDWERLIRQ 65 (106)
T ss_dssp HHHHHHHHHHHTTT-S-HHHHHHHHTT-S-CCC------HHTTGGGSTTTTTTTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHhccchhh------hhcCCCcCcccCCcccCCHHHHHHHHHH
Confidence 466677766665333355566666555443221 1112222223345788999999998875
No 289
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=34.74 E-value=61 Score=21.12 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
...++++.+.|+++|.+.|.= -+.. .++.=.+.++.+++||...+..+..
T Consensus 105 ~~Ff~Sa~~~L~~~G~IhVTl---~~~~------------------------py~~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 105 RGFFKSASQLLKPDGEIHVTL---KDGQ------------------------PYDSWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHHHHhcCCCCEEEEEe---CCCC------------------------CCccccHHHHHHhcCCEEEEEecCC
Confidence 455677778899999998832 2110 0111134566677888888776654
No 290
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.44 E-value=88 Score=17.74 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCcc-cEEEeccccc--cCChHHHHHHHHHHHhhCCCCC
Q 048196 8 VPKG-DAIFMKWILH--NWSDDHCLKLLKIYYKSIPEDG 43 (115)
Q Consensus 8 ~p~~-D~v~~~~vlh--~~~d~~~~~iL~~~~~aL~pgg 43 (115)
.|.+ |- ++-+++ ++.++...++++++.+.|.|+-
T Consensus 35 ~PSGID~--~Siii~~~~~~~~~~~~i~~~i~~~~~pD~ 71 (76)
T cd04911 35 MPSGIDD--ISIIIRDNQLTDEKEQKILAEIKEELHPDE 71 (76)
T ss_pred ecCCCcc--EEEEEEccccchhhHHHHHHHHHHhcCCCE
Confidence 4655 53 233444 3344466789999999999874
No 291
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=34.36 E-value=37 Score=18.06 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHhCCCCeeE
Q 048196 82 RTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 82 rt~~e~~~ll~~aGf~~~~ 100 (115)
--++||..+|..+|.+..+
T Consensus 25 glp~ew~~~l~~~~it~~~ 43 (59)
T PF00786_consen 25 GLPPEWEKLLKSSGITEEE 43 (59)
T ss_dssp S--HHHHHHHHSCTTSHHH
T ss_pred cCCHHHHhhccccCCCHHH
Confidence 4578999999999977543
No 292
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
Probab=34.19 E-value=48 Score=23.29 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.9
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
.|+.| +++.+|+..||++.+.+++.
T Consensus 190 EGrnr---QVRRm~~a~G~~V~~L~R~~ 214 (248)
T COG1187 190 EGRNR---QVRRMFEAVGLEVLRLKRIR 214 (248)
T ss_pred CCcCH---HHHHHHHHcCCEEeEEEEEE
Confidence 78776 99999999999999988774
No 293
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=33.98 E-value=78 Score=16.75 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCCeeEEEEcCCceEEEEEE
Q 048196 84 KHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~ 114 (115)
..++.+++++.|++........+ ...+..+
T Consensus 39 ~~~i~~~~~~~g~~~~~~~~~~~-~~~i~i~ 68 (69)
T cd00291 39 VEDIPAWAKETGHEVLEVEEEGG-VYRILIR 68 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEeCC-EEEEEEE
Confidence 56888999999999876665544 3333333
No 294
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=33.97 E-value=87 Score=19.29 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHhhCC---C-CCEEEEEee
Q 048196 23 WSDDHCLKLLKIYYKSIP---E-DGKVIVVES 50 (115)
Q Consensus 23 ~~d~~~~~iL~~~~~aL~---p-gg~lii~d~ 50 (115)
.+|+...+++..+.++++ + +|++++.+.
T Consensus 65 V~de~ve~vie~I~~~a~tG~~GDGkIFV~~V 96 (112)
T COG0347 65 VSDEDVDEVIEAIKKAARTGKIGDGKIFVSPV 96 (112)
T ss_pred EChHHHHHHHHHHHHHHhcCCCCCeEEEEEEh
Confidence 458888888988888887 3 499998763
No 295
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=33.81 E-value=1.5e+02 Score=21.57 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=41.6
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhch-------hccchhcccCCCceeCCHHHHHHH----
Q 048196 22 NWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNS-------QLDVLMMTQNPSGKKRTKHEFLTL---- 90 (115)
Q Consensus 22 ~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~g~~rt~~e~~~l---- 90 (115)
-|+|+ ...-++++.+++...|..++++..-......+....... .............++-|.+|+.++
T Consensus 73 i~~d~-~i~~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 151 (341)
T PF00724_consen 73 IWDDE-QIPGLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDF 151 (341)
T ss_dssp SSSHH-HHHHHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHH
T ss_pred hchhh-HHHHHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHH
Confidence 35554 678889999999887777777765443211110000000 000000000001256788877765
Q ss_pred ------HHhCCCCeeEEEEcC
Q 048196 91 ------ATGAGFSGTRFEWFT 105 (115)
Q Consensus 91 ------l~~aGf~~~~~~~~~ 105 (115)
.++|||.-++++--.
T Consensus 152 ~~AA~~A~~AGfDGVEIH~ah 172 (341)
T PF00724_consen 152 AQAARRAKEAGFDGVEIHAAH 172 (341)
T ss_dssp HHHHHHHHHTT-SEEEEEEST
T ss_pred HHHHHHHHHhccCeEeecccc
Confidence 456999999988643
No 296
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=33.67 E-value=2e+02 Score=21.39 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196 23 WSDDHCLKLLKIYYKSIPEDGKVIVVESI 51 (115)
Q Consensus 23 ~~d~~~~~iL~~~~~aL~pgg~lii~d~~ 51 (115)
+.+++...-++++.++....|..++++..
T Consensus 76 ~~~~~~i~~~k~l~davh~~G~~i~~QL~ 104 (382)
T cd02931 76 YNPTAFIRTAKEMTERVHAYGTKIFLQLT 104 (382)
T ss_pred cCCHHHhHHHHHHHHHHHHcCCEEEEEcc
Confidence 44566788999999999887766676754
No 297
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=33.44 E-value=1.7e+02 Score=22.01 Aligned_cols=82 Identities=6% Similarity=0.056 Sum_probs=43.9
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEE----EeeecCCCCC-CchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCC
Q 048196 21 HNWSDDHCLKLLKIYYKSIPEDGKVIV----VESILPELPE-TSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAG 95 (115)
Q Consensus 21 h~~~d~~~~~iL~~~~~aL~pgg~lii----~d~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aG 95 (115)
+..++++..++++++...--|.++-++ .++.++.... .++.......+...+.+. -+..-....+.+.+++||
T Consensus 102 ~~I~~~dv~~~~~~a~~~~~~~~~~i~~~~p~~~~vD~~~~v~~P~g~~g~~l~~~v~lv--~~~~~~~~~~~~a~~~aG 179 (420)
T PRK09472 102 EEVTQEDVENVVHTAKSVRVRDEHRILHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLI--TCHNDMAKNIVKAVERCG 179 (420)
T ss_pred CeeCHHHHHHHHHHhhccCCCCCCEEEEEeceeEEECCCCCcCCCCCCcccEEEEEEEEE--EEchHHHHHHHHHHHHcC
Confidence 347888899999988764333344333 3345554431 111111122122222221 233334567778889999
Q ss_pred CCeeEEEEc
Q 048196 96 FSGTRFEWF 104 (115)
Q Consensus 96 f~~~~~~~~ 104 (115)
|++..+..-
T Consensus 180 l~v~~iv~e 188 (420)
T PRK09472 180 LKVDQLIFA 188 (420)
T ss_pred CeEeeEEeh
Confidence 999877543
No 298
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=33.28 E-value=1.4e+02 Score=20.67 Aligned_cols=38 Identities=16% Similarity=0.374 Sum_probs=27.2
Q ss_pred CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 7 NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 7 ~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
.+|. +|++++..--.++++++..+| .+-|..||++++.
T Consensus 193 ~IP~~~d~Lvi~~P~~~ls~~e~~~l----~~yl~~GG~ll~~ 231 (271)
T PF09822_consen 193 EIPDDADVLVIAGPKTDLSEEELYAL----DQYLMNGGKLLIL 231 (271)
T ss_pred ccCCCCCEEEEECCCCCCCHHHHHHH----HHHHHcCCeEEEE
Confidence 5775 699998888888988664433 3355569988873
No 299
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=33.15 E-value=1.3e+02 Score=23.64 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=34.8
Q ss_pred cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
++|+|++--.-.+++-.|...+-+-+++.++++-.++++|.
T Consensus 231 dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEH 271 (591)
T COG1245 231 DADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271 (591)
T ss_pred cCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEec
Confidence 36999998888888888888998988888888888888875
No 300
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=32.77 E-value=47 Score=18.87 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=18.0
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~ 102 (115)
.+..--...+..+|+..||...++-
T Consensus 12 t~~~GlA~~~a~~L~~~Gf~v~~~~ 36 (90)
T PF13399_consen 12 TGVSGLAARVADALRNRGFTVVEVG 36 (90)
T ss_pred cCCcCHHHHHHHHHHHCCCceeecC
Confidence 3444446788999999999887653
No 301
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=32.67 E-value=87 Score=24.35 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=27.5
Q ss_pred CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 9 PKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 9 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+.+|+|++. .||+....+-+++...|+||..|....
T Consensus 96 ~~ADvVviL-----lPDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 96 PQADLVINL-----TPDKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HhCCEEEEc-----CChHHHHHHHHHHHhhCCCCCEEEecC
Confidence 446877643 677766777799999999998888755
No 302
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.49 E-value=49 Score=19.25 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=20.4
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~ 101 (115)
+|.++...++++++++.|++....
T Consensus 6 GG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 6 GGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred cCCcccHHHHHHHHHHcCCEEEEE
Confidence 788888999999999999877544
No 303
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=32.37 E-value=82 Score=23.70 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=25.5
Q ss_pred CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEE
Q 048196 7 NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVI 46 (115)
Q Consensus 7 ~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~li 46 (115)
++|+ +|+++.--+=..+=.|.-.+-.-.+++-|+|.|+++
T Consensus 239 eLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 239 ELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 5775 698886644433444444444455668899998875
No 304
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=32.12 E-value=1.3e+02 Score=21.46 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=16.0
Q ss_pred hhCCCCCEEEEEeeecCCCC
Q 048196 37 KSIPEDGKVIVVESILPELP 56 (115)
Q Consensus 37 ~aL~pgg~lii~d~~~~~~~ 56 (115)
++|++|.+++|+|-++....
T Consensus 189 ~~l~~G~rVLIVDDv~~TGg 208 (268)
T TIGR01743 189 RSLKTGSKVLIIDDFMKAGG 208 (268)
T ss_pred hhCCCcCEEEEEeeecccCH
Confidence 57889999999998777653
No 305
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.11 E-value=1.8e+02 Score=20.73 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=21.1
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
+....+..+++++++..+...++..+.
T Consensus 234 ~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 234 DESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred eCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 556788999999999888877776544
No 306
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=32.08 E-value=98 Score=18.55 Aligned_cols=21 Identities=5% Similarity=0.113 Sum_probs=17.6
Q ss_pred HHHHHHHhhCCCCCEEEEEee
Q 048196 30 KLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 30 ~iL~~~~~aL~pgg~lii~d~ 50 (115)
..++++.+.|+||...++...
T Consensus 43 ~~~~ev~~~L~~GssAl~~lv 63 (102)
T PF06897_consen 43 EFIKEVGEALKPGSSALFLLV 63 (102)
T ss_pred HHHHHHHhhcCCCceEEEEEe
Confidence 579999999999988777654
No 307
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.91 E-value=50 Score=16.96 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=13.2
Q ss_pred HHHHHHHHHhCCCCe
Q 048196 84 KHEFLTLATGAGFSG 98 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~ 98 (115)
.+...+.|+++||++
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 779999999999965
No 308
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=30.84 E-value=90 Score=18.37 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=23.2
Q ss_pred cCChHHHHHHHHHHHhhCCC-CCEEEEEee
Q 048196 22 NWSDDHCLKLLKIYYKSIPE-DGKVIVVES 50 (115)
Q Consensus 22 ~~~d~~~~~iL~~~~~aL~p-gg~lii~d~ 50 (115)
+.++++..+++.++.+.+.. ||.++-.|.
T Consensus 17 ~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~ 46 (97)
T CHL00123 17 DLNEEELLKWIENYKKLLRKRGAKNISVQN 46 (97)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 45788899999999999876 677766664
No 309
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=30.79 E-value=57 Score=21.04 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCCeeEEE
Q 048196 85 HEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~~~ 102 (115)
.+|.+.++++||++..+.
T Consensus 40 ~~w~~~mk~~Gf~Vk~~~ 57 (149)
T COG3019 40 DEWAQHMKANGFEVKVVE 57 (149)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 699999999999986654
No 310
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=30.71 E-value=63 Score=23.24 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhCCCCCEEEEEee
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
..+.+..+.++|+.||||+-+-.
T Consensus 46 Ia~Av~~~~~~l~~GGRLiY~GA 68 (298)
T COG2103 46 IAAAVDIIAAALKQGGRLIYIGA 68 (298)
T ss_pred HHHHHHHHHHHHHcCCeEEEEcC
Confidence 34566677788999999987653
No 311
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=30.40 E-value=48 Score=18.01 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=12.9
Q ss_pred eCCHHHHHHHHHhCC
Q 048196 81 KRTKHEFLTLATGAG 95 (115)
Q Consensus 81 ~rt~~e~~~ll~~aG 95 (115)
-++.+||.+++++.|
T Consensus 14 Gk~~~~W~~~~~~~~ 28 (61)
T PF14117_consen 14 GKTLDEWLALAREGG 28 (61)
T ss_pred CcCHHHHHHHHHHhC
Confidence 378999999999984
No 312
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=30.04 E-value=66 Score=15.30 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHhCCCCee
Q 048196 82 RTKHEFLTLATGAGFSGT 99 (115)
Q Consensus 82 rt~~e~~~ll~~aGf~~~ 99 (115)
-|.++++++|.+.|....
T Consensus 4 Ws~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 367899999999996543
No 313
>cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like. This group is comprised of bacterial proteins similar to Escherichia coli RluF. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluF makes psi2604 in 23S RNA. psi2604 has only been detected in E. coli. It is absent from other eubacteria despite a precursor U at that site and from eukarya and archea which lack a precursor U at that site.
Probab=30.04 E-value=70 Score=20.83 Aligned_cols=25 Identities=16% Similarity=0.334 Sum_probs=20.9
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
.|+.| +++.+|+..|+.+.+.+++.
T Consensus 116 eGr~~---qIRrm~~~~G~~V~~L~Ri~ 140 (164)
T cd02554 116 QGLNR---QIRRMCEALGYRVTDLKRVR 140 (164)
T ss_pred CCcCH---HHHHHHHHcCCEEEEEEEEE
Confidence 66654 99999999999999887763
No 314
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=29.87 E-value=1.5e+02 Score=19.81 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=21.2
Q ss_pred cccEEEeccccc-cCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 10 KGDAIFMKWILH-NWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 10 ~~D~v~~~~vlh-~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
.+|++++...-. .+++++...+.+- ++.||.++.+.
T Consensus 52 ~~Dvvv~~~~~~~~l~~~~~~al~~~----v~~Ggglv~lH 88 (217)
T PF06283_consen 52 GYDVVVFYNTGGDELTDEQRAALRDY----VENGGGLVGLH 88 (217)
T ss_dssp T-SEEEEE-SSCCGS-HHHHHHHHHH----HHTT-EEEEEG
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHH----HHcCCCEEEEc
Confidence 359999988875 4777654444443 33588888776
No 315
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=29.81 E-value=86 Score=21.91 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=24.3
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
.|++++= -..+.-...+..+.+.|+|||.|++ |.++
T Consensus 157 fD~iFiD-----adK~~Y~~y~~~~l~ll~~GGviv~-DNvl 192 (247)
T PLN02589 157 FDFIFVD-----ADKDNYINYHKRLIDLVKVGGVIGY-DNTL 192 (247)
T ss_pred ccEEEec-----CCHHHhHHHHHHHHHhcCCCeEEEE-cCCC
Confidence 3666643 3345567788888899999988665 5443
No 316
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=29.56 E-value=1.1e+02 Score=21.60 Aligned_cols=70 Identities=9% Similarity=0.102 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhC-CCCCEEEEEeeecCCCCCCchhhhhch-hccchhcccCCCceeCCHHH----HHHHHHhCCCCeeEE
Q 048196 28 CLKLLKIYYKSI-PEDGKVIVVESILPELPETSTVSKRNS-QLDVLMMTQNPSGKKRTKHE----FLTLATGAGFSGTRF 101 (115)
Q Consensus 28 ~~~iL~~~~~aL-~pgg~lii~d~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~g~~rt~~e----~~~ll~~aGf~~~~~ 101 (115)
+.+-+.++.++| .|+|-.+++-. .+.+.....++++ ..+..+... .-.+.++..+ +++++.+||.+...+
T Consensus 16 ai~hi~ri~RvL~~~~Gh~LLvG~---~GsGr~sl~rLaa~i~~~~~~~i-~~~~~y~~~~f~~dLk~~~~~ag~~~~~~ 91 (268)
T PF12780_consen 16 AIEHIARISRVLSQPRGHALLVGV---GGSGRQSLARLAAFICGYEVFQI-EITKGYSIKDFKEDLKKALQKAGIKGKPT 91 (268)
T ss_dssp HHHHHHHHHHHHCSTTEEEEEECT---TTSCHHHHHHHHHHHTTEEEE-T-TTSTTTHHHHHHHHHHHHHHHHHCS-S-E
T ss_pred HHHHHHHHHHHHcCCCCCeEEecC---CCccHHHHHHHHHHHhccceEEE-EeeCCcCHHHHHHHHHHHHHHHhccCCCe
Confidence 455666777777 47888876331 1212211222221 112222111 1234455555 456778899886554
No 317
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.55 E-value=1e+02 Score=21.50 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=19.6
Q ss_pred CCceeCCHHHHHHHHHhCCCCeeE
Q 048196 77 PSGKKRTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 77 ~~g~~rt~~e~~~ll~~aGf~~~~ 100 (115)
.+|..++.+++.+++++.|..-+-
T Consensus 201 asGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 201 ALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred EeCCCCCHHHHHHHHHHCCCCEEE
Confidence 378889999999999888876553
No 318
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=29.52 E-value=49 Score=24.47 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=17.8
Q ss_pred CHHHHHHHHHhCCCCeeEEEE
Q 048196 83 TKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 83 t~~e~~~ll~~aGf~~~~~~~ 103 (115)
.++|++.+++++||++++-..
T Consensus 242 nE~evE~~~q~~G~~IVrPEt 262 (368)
T COG4421 242 NEEEVERLLQRSGLTIVRPET 262 (368)
T ss_pred CHHHHHHHHHhcCcEEEechh
Confidence 578999999999999987543
No 319
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=29.45 E-value=69 Score=23.41 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=18.3
Q ss_pred HHHHHHHHhhCCCCCEEEEEee
Q 048196 29 LKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~ 50 (115)
...++.+.+.|+|+|++++...
T Consensus 286 ~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 286 PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred hHHHHHHHHHhccCCEEEEEcC
Confidence 4577888899999999999854
No 320
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=29.25 E-value=23 Score=24.22 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=36.5
Q ss_pred CCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 2 DDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 2 gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
||-.+ .+..||++++-..=.-+=++..+.+++++.+-|+-+++++=.+....
T Consensus 87 gDA~~y~fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~ 139 (252)
T COG4076 87 GDARDYDFENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIG 139 (252)
T ss_pred cccccccccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHhhc
Confidence 55555 55557888766544445567778999999999999988876665433
No 321
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=29.05 E-value=46 Score=19.04 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=15.8
Q ss_pred CceeCCHHHHHHHHHhCCCCeeE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~ 100 (115)
.|...|.+++.+.|+..|++.+.
T Consensus 3 ~G~~ls~~~l~~eL~~LgYR~v~ 25 (85)
T PF14814_consen 3 PGAPLSPAQLEQELELLGYRKVS 25 (85)
T ss_dssp TT-S--HHHHHHHHHHTT-EE-S
T ss_pred CCcccCHHHHHHHHHHcCCCcCC
Confidence 46678899999999999998875
No 322
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=28.98 E-value=1.7e+02 Score=19.23 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=42.5
Q ss_pred cCChHHHHHHHHHHHhhCCC--CCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHH-HHHHHhCCCCe
Q 048196 22 NWSDDHCLKLLKIYYKSIPE--DGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEF-LTLATGAGFSG 98 (115)
Q Consensus 22 ~~~d~~~~~iL~~~~~aL~p--gg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~-~~ll~~aGf~~ 98 (115)
..++++..++++.|.+++.. +|+.+.+....... ...++. ...+ .-.+|-+.| .+.|++||.+.
T Consensus 97 ~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~--d~Fy~A-~G~Y----------~l~~TCNtWta~~L~aaG~~~ 163 (173)
T PF09601_consen 97 RLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPD--DAFYEA-KGRY----------SLFNTCNTWTARALKAAGLPA 163 (173)
T ss_pred EcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCC--CeeEee-ccce----------EeecCcHHHHHHHHHHcCCCc
Confidence 57889999999999999875 58877764333322 111111 0111 123566777 78999999876
Q ss_pred eEEEE
Q 048196 99 TRFEW 103 (115)
Q Consensus 99 ~~~~~ 103 (115)
.-..+
T Consensus 164 ~~wtp 168 (173)
T PF09601_consen 164 GLWTP 168 (173)
T ss_pred ccccc
Confidence 54333
No 323
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=28.64 E-value=75 Score=21.43 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=15.7
Q ss_pred CHHHHHHHHHhCCCCeeEE
Q 048196 83 TKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 83 t~~e~~~ll~~aGf~~~~~ 101 (115)
..++|.+.|+++||+....
T Consensus 29 A~~~Wn~~fe~~Gf~~a~~ 47 (197)
T cd04276 29 GVLYWNKAFEKAGFKNAII 47 (197)
T ss_pred HHHHHHHHHHhcCCCccEE
Confidence 3579999999999998654
No 324
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=28.60 E-value=1.5e+02 Score=20.99 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhCCCC-CEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc-eeCCHHHHHHHHHhCCCCeeEE
Q 048196 28 CLKLLKIYYKSIPED-GKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG-KKRTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 28 ~~~iL~~~~~aL~pg-g~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-~~rt~~e~~~ll~~aGf~~~~~ 101 (115)
.-.+||++.+.|... --++|+|+-..=..-+ .......|+..++.-++- ..||.+.+++|-+++||+.+-+
T Consensus 118 ~~allR~~l~~l~~~~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~ 190 (255)
T COG3640 118 MNALLRRLLRHLILNRYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFV 190 (255)
T ss_pred HHHHHHHHHHHHhcccCcEEEEecccchhhhc---cccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEE
Confidence 356778888877776 7788877643322111 112334666666543232 2478899999999999776543
No 325
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=28.34 E-value=1.1e+02 Score=16.81 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=23.9
Q ss_pred cCChHHHHHHHHHHHhhCCCC-CEEEEEeee
Q 048196 22 NWSDDHCLKLLKIYYKSIPED-GKVIVVESI 51 (115)
Q Consensus 22 ~~~d~~~~~iL~~~~~aL~pg-g~lii~d~~ 51 (115)
..+..+..++++++.+.+.|+ +.+.+....
T Consensus 38 ~~~~~~~~~l~~~l~~~i~~~~d~i~i~~l~ 68 (78)
T PF09827_consen 38 NLTNAELRKLRRELEKLIDPDEDSIRIYPLC 68 (78)
T ss_dssp EE-HHHHHHHHHHHHHHSCTTTCEEEEEEEE
T ss_pred EcCHHHHHHHHHHHHhhCCCCCCEEEEEEeC
Confidence 346677889999999999998 999887654
No 326
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=28.15 E-value=1.1e+02 Score=16.60 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCCeeEEEEcC
Q 048196 84 KHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
...+.+|+++.|+++.......
T Consensus 39 ~~ni~~~~~~~g~~v~~~~~~~ 60 (69)
T cd03422 39 INNIPIDARNHGYKVLAIEQSG 60 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecC
Confidence 4678888899999887665544
No 327
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=28.05 E-value=71 Score=17.14 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHhCCCCe
Q 048196 82 RTKHEFLTLATGAGFSG 98 (115)
Q Consensus 82 rt~~e~~~ll~~aGf~~ 98 (115)
.+.+++.++.+++||..
T Consensus 25 ~~~e~~~~lA~~~Gf~f 41 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEF 41 (64)
T ss_pred CCHHHHHHHHHHcCCCC
Confidence 45677778888888764
No 328
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=27.91 E-value=66 Score=23.99 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=20.8
Q ss_pred eeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 80 KKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 80 ~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
..++.+|+.++++++||..+..-+.
T Consensus 335 ~~~~~eel~~~i~~aG~~p~~Rdt~ 359 (370)
T COG1060 335 DWRSVEELAALIKEAGRIPVERDTL 359 (370)
T ss_pred CCCCHHHHHHHHHHcCCCeeeeccc
Confidence 4688999999999999998765443
No 329
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=27.64 E-value=97 Score=23.00 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 25 DDHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 25 d~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
++--.++|..+.+.|++||++++.-+
T Consensus 286 ~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 286 DELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 44577899999999999999988544
No 330
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=27.55 E-value=1e+02 Score=16.11 Aligned_cols=36 Identities=6% Similarity=0.102 Sum_probs=24.6
Q ss_pred cccccCChHHHHHHHHHHHhhCC------CCCEEEEEeeecC
Q 048196 18 WILHNWSDDHCLKLLKIYYKSIP------EDGKVIVVESILP 53 (115)
Q Consensus 18 ~vlh~~~d~~~~~iL~~~~~aL~------pgg~lii~d~~~~ 53 (115)
.++...++++..++.+.+.+++. +....++++.+.+
T Consensus 7 ~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~ 48 (60)
T PRK02289 7 DLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPE 48 (60)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCh
Confidence 44557899999999999998874 3445555544433
No 331
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.51 E-value=43 Score=15.47 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=9.2
Q ss_pred HHHHHHHHhC---CCCee
Q 048196 85 HEFLTLATGA---GFSGT 99 (115)
Q Consensus 85 ~e~~~ll~~a---Gf~~~ 99 (115)
.||.+|+.+| |++..
T Consensus 3 ~EW~~Li~eA~~~Gls~e 20 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKE 20 (30)
T ss_dssp HHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 5888888764 65543
No 332
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=27.33 E-value=63 Score=20.09 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 25 DDHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 25 d~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
.+...++.+.+.++++.||+|+++-.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~ 43 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGN 43 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34566777778888899999999763
No 333
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=27.30 E-value=1e+02 Score=15.99 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=15.7
Q ss_pred eCCHHHHHHHHHhCCCCeeEE
Q 048196 81 KRTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 81 ~rt~~e~~~ll~~aGf~~~~~ 101 (115)
..+.++..++|+++||.....
T Consensus 8 g~~~~~a~~~l~~~g~~~~~~ 28 (63)
T PF03793_consen 8 GMTYDEAKSILEAAGLTVNVV 28 (63)
T ss_dssp TSBHHHHHHHHHHTT-EEEEE
T ss_pred CCcHHHHHHHHHHCCCEEEEE
Confidence 367899999999999955433
No 334
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=27.29 E-value=1.3e+02 Score=20.10 Aligned_cols=60 Identities=7% Similarity=0.001 Sum_probs=32.6
Q ss_pred hhCCCCCEEEEEeeecCCCCCCchhhhhch-----hccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196 37 KSIPEDGKVIVVESILPELPETSTVSKRNS-----QLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 37 ~aL~pgg~lii~d~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
..+.+|-+++|+|-++..........+... ......+ -.|.. .+++.+++.|.+...+..
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vl------vdr~~-g~~~~l~~~gi~~~sl~~ 181 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITV------VDREE-GAEENLKEADVELVPLVS 181 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEE------EECCc-ChHHHHHHcCCcEEEEEE
Confidence 467789999999988886643211111100 0111111 12443 567777888877666554
No 335
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=26.80 E-value=88 Score=24.36 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEE
Q 048196 27 HCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 27 ~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 102 (115)
...-.|.+..+.|++.|.|.|.+--.-+..-. ++.....+-. . -..+.....+|++.|.+.|..++++.
T Consensus 82 ~~~~flwRfw~~lP~~G~I~IFdRSWY~~vlv---erv~g~~~~~---~-~~~~~~~I~~FE~~L~~~G~~IlKff 150 (493)
T TIGR03708 82 RERPPMWRFWRRLPPKGKIGIFFGSWYTRPLI---ERLEGRIDEA---K-LDSHIEDINRFERMLADDGALILKFW 150 (493)
T ss_pred hcCcHHHHHHHhCCCCCeEEEEcCcccchhhH---HHhcCCCCHH---H-HHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 36667888888999988888887544433111 0000000000 0 01233456688999999998888763
No 336
>COG3910 Predicted ATPase [General function prediction only]
Probab=26.60 E-value=1.2e+02 Score=20.94 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=22.5
Q ss_pred cCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 22 NWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 22 ~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
-++.....++|..+++.-++|+.+||.-
T Consensus 158 ~LSp~RQlella~l~~la~sGaQ~IiAT 185 (233)
T COG3910 158 ALSPSRQLELLAILRDLADSGAQIIIAT 185 (233)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3455567889999999989999998865
No 337
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=26.47 E-value=2.2e+02 Score=19.68 Aligned_cols=17 Identities=12% Similarity=-0.052 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCCCeeEE
Q 048196 85 HEFLTLATGAGFSGTRF 101 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~~ 101 (115)
+.+.++++..|.+.+.+
T Consensus 140 ~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 140 ELVEELWEALGARVVEM 156 (258)
T ss_dssp HHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHCCCEEEEc
Confidence 46788888999766543
No 338
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=26.30 E-value=1.5e+02 Score=17.50 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=28.9
Q ss_pred cccEEEecccc-ccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 10 KGDAIFMKWIL-HNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 10 ~~D~v~~~~vl-h~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
+||++++..+- -+-.+.+....++++.+.=+|+.++++.=.+....
T Consensus 36 ~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~ 82 (98)
T PF00919_consen 36 EADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRY 82 (98)
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccC
Confidence 47998887644 33334445555555554334889998888776654
No 339
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=26.26 E-value=56 Score=16.22 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=10.2
Q ss_pred HHHHHHHhCCCCee
Q 048196 86 EFLTLATGAGFSGT 99 (115)
Q Consensus 86 e~~~ll~~aGf~~~ 99 (115)
++..-+..|||..+
T Consensus 2 e~a~Rl~~AgF~~i 15 (41)
T PF11590_consen 2 ETAERLRSAGFATI 15 (41)
T ss_dssp HHHHHHHHTT-EEE
T ss_pred hHHHHHHHHhHHHh
Confidence 67788899999765
No 340
>PRK09902 hypothetical protein; Provisional
Probab=26.19 E-value=20 Score=24.64 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=25.8
Q ss_pred cccccCChHHHHHHHHHHHhhCCC-------CCEEEEEeeecCCC
Q 048196 18 WILHNWSDDHCLKLLKIYYKSIPE-------DGKVIVVESILPEL 55 (115)
Q Consensus 18 ~vlh~~~d~~~~~iL~~~~~aL~p-------gg~lii~d~~~~~~ 55 (115)
+.+..++......+++.+.+.++. .|.+++.+..++.+
T Consensus 120 ~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~ 164 (216)
T PRK09902 120 HAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTE 164 (216)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCC
Confidence 344445666667888888877753 58888888877643
No 341
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=26.19 E-value=83 Score=22.01 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEe
Q 048196 27 HCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 27 ~~~~iL~~~~~aL~pgg~lii~d 49 (115)
+..+.+..+.++|+.||+|+++=
T Consensus 34 ~I~~av~~~~~~l~~ggrl~~~G 56 (257)
T cd05007 34 QIARAVDAAAERLRAGGRLIYVG 56 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEc
Confidence 45666777888899999998865
No 342
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.89 E-value=69 Score=16.87 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCCCe
Q 048196 84 KHEFLTLATGAGFSG 98 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~ 98 (115)
.+...+.|+++||++
T Consensus 55 ~~~~~~~L~~~G~~v 69 (69)
T cd04909 55 RERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHcCCcC
Confidence 568999999999963
No 343
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=25.81 E-value=33 Score=16.31 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.0
Q ss_pred eCCHHHHHHHHHhCC
Q 048196 81 KRTKHEFLTLATGAG 95 (115)
Q Consensus 81 ~rt~~e~~~ll~~aG 95 (115)
+|....|+++|-++|
T Consensus 19 ~rv~kAWRNiFvqag 33 (34)
T PF13137_consen 19 YRVDKAWRNIFVQAG 33 (34)
T ss_pred HHHHHHHHHHHHHcc
Confidence 455678999998887
No 344
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=25.76 E-value=67 Score=16.49 Aligned_cols=14 Identities=7% Similarity=0.071 Sum_probs=11.5
Q ss_pred HHHHHhCCCCeeEE
Q 048196 88 LTLATGAGFSGTRF 101 (115)
Q Consensus 88 ~~ll~~aGf~~~~~ 101 (115)
.++|+..||.++.+
T Consensus 24 ~r~L~~~G~~Vi~I 37 (58)
T PF08373_consen 24 HRHLKALGYKVISI 37 (58)
T ss_pred HHHHHHCCCEEEEe
Confidence 67889999988765
No 345
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=25.75 E-value=44 Score=23.24 Aligned_cols=77 Identities=12% Similarity=-0.013 Sum_probs=44.0
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee--cCCCCCCchhhhhchhccchhcccCCCceeCCHHHHH
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI--LPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFL 88 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~ 88 (115)
.|+++. .|- ..+|+.-++.|+..-|++||.++|.=-. .+.. ..+ .+ .-++-.
T Consensus 144 VDvI~~-DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t-~~p--------------------~~-vf~~e~ 197 (229)
T PF01269_consen 144 VDVIFQ-DVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDST-ADP--------------------EE-VFAEEV 197 (229)
T ss_dssp EEEEEE-E-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS-SSH--------------------HH-HHHHHH
T ss_pred ccEEEe-cCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCc-CCH--------------------HH-HHHHHH
Confidence 476653 333 2356777888888999999999885221 2211 111 00 012334
Q ss_pred HHHHhCCCCeeEEEEcCC---ceEEEEE
Q 048196 89 TLATGAGFSGTRFEWFTC---NLWVRDF 113 (115)
Q Consensus 89 ~ll~~aGf~~~~~~~~~~---~~~lie~ 113 (115)
+.|++.||+..+...+.+ .+.++.+
T Consensus 198 ~~L~~~~~~~~e~i~LePy~~dH~~vv~ 225 (229)
T PF01269_consen 198 KKLKEEGFKPLEQITLEPYERDHAMVVG 225 (229)
T ss_dssp HHHHCTTCEEEEEEE-TTTSTTEEEEEE
T ss_pred HHHHHcCCChheEeccCCCCCCcEEEEE
Confidence 556778999998888853 4555544
No 346
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=25.73 E-value=84 Score=17.02 Aligned_cols=28 Identities=25% Similarity=0.120 Sum_probs=19.5
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196 21 HNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 21 h~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
...+.+++.++|++ -++.|.++|-....
T Consensus 4 g~isr~~Ae~~L~~----~~~~G~FLvR~s~~ 31 (77)
T PF00017_consen 4 GFISRQEAERLLMQ----GKPDGTFLVRPSSS 31 (77)
T ss_dssp ESSHHHHHHHHHHT----TSSTTEEEEEEESS
T ss_pred CCCCHHHHHHHHHh----cCCCCeEEEEeccc
Confidence 35566778888886 46678888866543
No 347
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=25.69 E-value=93 Score=22.88 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=26.5
Q ss_pred CCCC-CCCcccEEEecc--ccccCChHHHHHHHHHHHhh
Q 048196 3 DMFQ-NVPKGDAIFMKW--ILHNWSDDHCLKLLKIYYKS 38 (115)
Q Consensus 3 d~~~-~~p~~D~v~~~~--vlh~~~d~~~~~iL~~~~~a 38 (115)
|.+. ++-++|+|++.- ++.++++.+...+|......
T Consensus 237 d~~~~~v~~GDvIilATDGlfDNl~e~~Il~il~~~~~~ 275 (330)
T KOG1379|consen 237 DVTSFDVQKGDVIILATDGLFDNLPEKEILSILKGLDAR 275 (330)
T ss_pred ceEEEeccCCCEEEEecccccccccHHHHHHHHHHhhcc
Confidence 4444 444579999884 99999999888888876553
No 348
>PRK05473 hypothetical protein; Provisional
Probab=25.67 E-value=58 Score=19.04 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=17.3
Q ss_pred cCChHHHHHHHHHHHhhCCCCCE
Q 048196 22 NWSDDHCLKLLKIYYKSIPEDGK 44 (115)
Q Consensus 22 ~~~d~~~~~iL~~~~~aL~pgg~ 44 (115)
.-...+..++|..+++||...|-
T Consensus 14 ~~~~~~v~eiL~~Vy~AL~EKGY 36 (86)
T PRK05473 14 DEKKKDVREILTTVYDALEEKGY 36 (86)
T ss_pred cccHHHHHHHHHHHHHHHHHcCC
Confidence 34445689999999999976543
No 349
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=25.44 E-value=1.9e+02 Score=20.46 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCch---hhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEE
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESILPELPETST---VSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 101 (115)
+++.++..+. . ---|++.|........... .++.+.. +.|-. +.+|..||.++.+++|+ +|=..+++
T Consensus 33 VelA~~Y~e~-G-ADElvFlDItAs~~gr~~~~~vv~r~A~~--vfiPl-tVGGGI~s~eD~~~ll~-aGADKVSI 102 (256)
T COG0107 33 VELAKRYNEE-G-ADELVFLDITASSEGRETMLDVVERVAEQ--VFIPL-TVGGGIRSVEDARKLLR-AGADKVSI 102 (256)
T ss_pred HHHHHHHHHc-C-CCeEEEEecccccccchhHHHHHHHHHhh--ceeee-EecCCcCCHHHHHHHHH-cCCCeeee
Confidence 5666655553 1 1357777876554433321 1222222 22222 35899999999999998 56444443
No 350
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=25.25 E-value=96 Score=23.40 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEEee
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
-..++..+.+.|+|||.+++.-+
T Consensus 315 y~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 315 YKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred HHHHHHHHHHHcCCCCEEEEEec
Confidence 57888999999999999998654
No 351
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=25.10 E-value=2.3e+02 Score=19.83 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCCCEEEEEeeec
Q 048196 30 KLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 30 ~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
..++...++|+++|+++.+-...
T Consensus 245 ~~~~~~~~~l~~~G~~v~~g~~~ 267 (306)
T cd08258 245 PALEQALELLRKGGRIVQVGIFG 267 (306)
T ss_pred HHHHHHHHHhhcCCEEEEEcccC
Confidence 46677778899999999876543
No 352
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=24.94 E-value=1.7e+02 Score=17.86 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 26 DHCLKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 26 ~~~~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
+...++++++.++++--|.+..+|+--.
T Consensus 34 ~~~Lk~~~~~A~~vkG~gT~~~vdCgd~ 61 (112)
T cd03067 34 EALLKLLSDVAQAVKGQGTIAWIDCGDS 61 (112)
T ss_pred HHHHHHHHHHHHHhcCceeEEEEecCCh
Confidence 4467899999999999999999998653
No 353
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.91 E-value=1e+02 Score=18.29 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHhCCCCeeEEE
Q 048196 82 RTKHEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 82 rt~~e~~~ll~~aGf~~~~~~ 102 (115)
.+.+|+++|.+.+|++++...
T Consensus 8 ~~l~El~~L~~t~g~~vv~~~ 28 (95)
T PF13167_consen 8 ESLEELEELAETAGYEVVGTV 28 (95)
T ss_pred HHHHHHHHHHHHCCCeEEEEE
Confidence 457899999999999988543
No 354
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=24.81 E-value=71 Score=13.32 Aligned_cols=12 Identities=17% Similarity=0.085 Sum_probs=8.0
Q ss_pred HHHHHHHhhCCC
Q 048196 30 KLLKIYYKSIPE 41 (115)
Q Consensus 30 ~iL~~~~~aL~p 41 (115)
.+|++|..+--|
T Consensus 4 eiL~~CI~sAmP 15 (20)
T PF05924_consen 4 EILQECIGSAMP 15 (20)
T ss_dssp HHHHHHHHCTS-
T ss_pred HHHHHHHHHhcc
Confidence 788888865444
No 355
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=24.77 E-value=1e+02 Score=19.91 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=25.4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEE
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKV 45 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l 45 (115)
|.++. .+--++++++...-|+++..-|.++||.
T Consensus 81 ~~vVi-~v~~~i~~~~leaTL~QaA~nL~s~GR~ 113 (145)
T PF10726_consen 81 DQVVI-AVPPDITPEALEATLEQAASNLFSGGRS 113 (145)
T ss_pred cEEEE-EcCCCCCHHHHHHHHHHHHHhccccCcc
Confidence 44443 3455899999999999999999987764
No 356
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=24.68 E-value=1.9e+02 Score=20.51 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=33.2
Q ss_pred HHHHHHHhhCCCCCEEEEEeeecCCCCCCch-hhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeE
Q 048196 30 KLLKIYYKSIPEDGKVIVVESILPELPETST-VSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 30 ~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 100 (115)
+.+++..+.+++|...+++.+-..++..... .....+...+..+ +..++++++++.|.+.+.
T Consensus 215 ~~~~~~l~~l~~g~~eimcHPg~~d~~l~~~s~~~~~R~~E~~~L---------~sp~~~~~l~~~~I~Li~ 277 (283)
T TIGR03473 215 ARLLAALERLPEGVSEIYFHPATAQDAEITPSMPGYRHADELAAL---------LSPRVKAALKELGITLGG 277 (283)
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCChHhhccCCCCCccHHHHHHH---------cCHHHHHHHHHCCCEEec
Confidence 5677777788888776666554333210000 0000011122222 457999999999976653
No 357
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=24.67 E-value=73 Score=18.52 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=19.1
Q ss_pred HHHHHHHHhhCCCCCEEEEEeee
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESI 51 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~ 51 (115)
.+++.+....|.+|+.|++.+.-
T Consensus 38 ~~v~~~y~~~l~~GavLlLk~V~ 60 (86)
T PF15072_consen 38 RKVLEEYGDELSPGAVLLLKDVT 60 (86)
T ss_pred HHHHhhcCCccccCEEEEEeeee
Confidence 56777777889999999998863
No 358
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=24.64 E-value=74 Score=16.43 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHhCCCC
Q 048196 82 RTKHEFLTLATGAGFS 97 (115)
Q Consensus 82 rt~~e~~~ll~~aGf~ 97 (115)
-+.+++.+.++++||+
T Consensus 47 ~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 47 TSIEKIIEAIEKAGYE 62 (62)
T ss_dssp SCHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHhCcC
Confidence 5678999999999984
No 359
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=24.58 E-value=1.3e+02 Score=16.24 Aligned_cols=23 Identities=13% Similarity=-0.116 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCCeeEEEEcCC
Q 048196 84 KHEFLTLATGAGFSGTRFEWFTC 106 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~~~~~~~~~ 106 (115)
...+.+|.++.|++.......++
T Consensus 39 ~~di~~~~~~~g~~~~~~~~~~~ 61 (69)
T cd03423 39 TRDIPKFCTFLGHELLAQETEDE 61 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEcCC
Confidence 46788888899998887666433
No 360
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=24.58 E-value=1.2e+02 Score=15.75 Aligned_cols=35 Identities=9% Similarity=0.218 Sum_probs=23.4
Q ss_pred ccCChHHHHHHHHHHHhhCC------CCCEEEEEeeecCCC
Q 048196 21 HNWSDDHCLKLLKIYYKSIP------EDGKVIVVESILPEL 55 (115)
Q Consensus 21 h~~~d~~~~~iL~~~~~aL~------pgg~lii~d~~~~~~ 55 (115)
...+.++..++.+.+.++|. +....++++.+.+++
T Consensus 10 ~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~~~~ 50 (63)
T TIGR00013 10 EGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMPKNN 50 (63)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHH
Confidence 35678888888888887653 456666666554443
No 361
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.51 E-value=81 Score=23.92 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=22.0
Q ss_pred CceeCC---HHHHHHHHHhCCCCeeEEEEcC
Q 048196 78 SGKKRT---KHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 78 ~g~~rt---~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
+|..|- ...++.+|.+|||..+.+..+.
T Consensus 81 gGpCRfgnYi~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 81 GGPCRFGNYIELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred CCCcchhhHHHHHHHHHHHcCCCCCcEEEee
Confidence 666663 3477999999999999888764
No 362
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=24.33 E-value=76 Score=18.66 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=18.5
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 20 LHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 20 lh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
||-++...-..-|+.+.+.+.||-.+++++
T Consensus 2 Lhtv~~Sp~~~~l~~~l~~~~~~D~iLLie 31 (95)
T PRK13510 2 LHTLSRSPWLTDFAALLRLLKEGDDLLLLQ 31 (95)
T ss_pred eeeecCCCchhHHHHHHHhcCCCCEEEEeh
Confidence 444443322347788888888876666654
No 363
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=24.16 E-value=1e+02 Score=16.76 Aligned_cols=19 Identities=32% Similarity=0.183 Sum_probs=12.8
Q ss_pred HHHH-HHHhCCCCeeEEEEc
Q 048196 86 EFLT-LATGAGFSGTRFEWF 104 (115)
Q Consensus 86 e~~~-ll~~aGf~~~~~~~~ 104 (115)
|+.+ --.++||.+.++.|.
T Consensus 41 e~AE~~Y~~aGf~VtRiRP~ 60 (63)
T PHA00457 41 ELAEWQYVPAGFVVTRIRPE 60 (63)
T ss_pred HHHHHhhhccCcEEEEeccc
Confidence 4444 345799999888764
No 364
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=24.12 E-value=1.3e+02 Score=16.22 Aligned_cols=22 Identities=9% Similarity=-0.018 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCCeeEEEEcC
Q 048196 84 KHEFLTLATGAGFSGTRFEWFT 105 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~~~~~~~~ 105 (115)
..++.+|.++.|++........
T Consensus 39 ~~di~~~~~~~G~~~~~~~~~~ 60 (69)
T cd03420 39 ARDAQAWCKSTGNTLISLETEK 60 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEecC
Confidence 4678888899998887665543
No 365
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=24.07 E-value=61 Score=21.55 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhhCCCCCEE
Q 048196 25 DDHCLKLLKIYYKSIPEDGKV 45 (115)
Q Consensus 25 d~~~~~iL~~~~~aL~pgg~l 45 (115)
.+...++++++++++.|+|.+
T Consensus 223 ~~~~~~~~~~iK~~~DP~~il 243 (248)
T PF02913_consen 223 GPAALRLMRAIKQAFDPNGIL 243 (248)
T ss_dssp HHHHHHHHHHHHHHH-TTS-B
T ss_pred chHHHHHHHHhhhccCCccCC
Confidence 344688999999999998764
No 366
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=23.98 E-value=52 Score=24.41 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=16.8
Q ss_pred CHHHHHHHHHhCCCCeeEEE
Q 048196 83 TKHEFLTLATGAGFSGTRFE 102 (115)
Q Consensus 83 t~~e~~~ll~~aGf~~~~~~ 102 (115)
+.+.|++.++.|||+.+.+.
T Consensus 311 ~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 311 RLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred chhHHHHHHHhcCCeecCCC
Confidence 57799999999999987643
No 367
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=23.94 E-value=2.2e+02 Score=22.90 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=27.7
Q ss_pred cccEEEecccccc----CC-h-HHHHHHHHHHHhhCCCCCEEEEEee
Q 048196 10 KGDAIFMKWILHN----WS-D-DHCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 10 ~~D~v~~~~vlh~----~~-d-~~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
..|+.++-....+ .+ . +...++++.+.++++.||+++|-=+
T Consensus 364 ~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~f 410 (630)
T TIGR03675 364 RVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPVF 410 (630)
T ss_pred CCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 3588888654432 22 2 2345677888899999999998543
No 368
>KOG2698 consensus GTP cyclohydrolase I [Coenzyme transport and metabolism]
Probab=23.80 E-value=1.3e+02 Score=20.86 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=15.7
Q ss_pred HHHHHHHhhCCCCCEEEEEee
Q 048196 30 KLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 30 ~iL~~~~~aL~pgg~lii~d~ 50 (115)
+|...+.++++|+|..+++|.
T Consensus 184 QIA~a~s~~v~p~gVaVV~Ea 204 (247)
T KOG2698|consen 184 QIAVALSQAVQPAGVAVVVEA 204 (247)
T ss_pred HHHHHHHHhcCccceEEEEec
Confidence 344445567899999999984
No 369
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=23.75 E-value=2.1e+02 Score=19.57 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchh---hhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESILPELPETSTV---SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRF 101 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 101 (115)
..++++++.+. . +.+++.|.-......++.. .......++. +. .+|..+|.+++.++++ +|...+-+
T Consensus 148 ~~~~~~~~~~~--~-~~li~~di~~~G~~~g~~~~~~~~i~~~~~ip--vi-~~GGi~s~edi~~l~~-~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKW--P-EELIVLDIDRVGSGQGPDLELLERLAARADIP--VI-AAGGVRSVEDLELLKK-LGASGALV 217 (233)
T ss_pred HHHHHHHHHHh--C-CeEEEEEcCccccCCCcCHHHHHHHHHhcCCC--EE-EeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 45556665554 3 4777777655443333221 1122222222 22 3788899999999987 68665443
No 370
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=23.70 E-value=1.2e+02 Score=21.37 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=20.4
Q ss_pred cccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 20 LHNWSDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 20 lh~~~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
-.+|.......+.+++.+.++||+.+++.|
T Consensus 209 ~~Dw~~~~~~~i~~~v~~~~~~G~IILmHd 238 (268)
T TIGR02873 209 TIDWKNPSPSVMVNRVLSKIHPGAMVLMHP 238 (268)
T ss_pred CCCCCCCCHHHHHHHHHhcCCCCcEEEEcC
Confidence 356755455678888888888877665543
No 371
>PHA01782 hypothetical protein
Probab=23.68 E-value=25 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=18.3
Q ss_pred ccccCChHHHHHHHHHHHhhCCCCCE
Q 048196 19 ILHNWSDDHCLKLLKIYYKSIPEDGK 44 (115)
Q Consensus 19 vlh~~~d~~~~~iL~~~~~aL~pgg~ 44 (115)
+++|.....=+.+.++++++|+.|+|
T Consensus 43 il~HvdeHGDVt~a~kL~~aMPKGsR 68 (177)
T PHA01782 43 ILNHVDEHGDVTVAKKLYEAMPKGSR 68 (177)
T ss_pred HHHHHHHcccHHHHHHHHHHccccch
Confidence 44444443347888999999998865
No 372
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=23.65 E-value=34 Score=21.34 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=17.9
Q ss_pred ccccCChHHHHHHHHHHHhhCC
Q 048196 19 ILHNWSDDHCLKLLKIYYKSIP 40 (115)
Q Consensus 19 vlh~~~d~~~~~iL~~~~~aL~ 40 (115)
.+|.|+-++..++-+++++||.
T Consensus 100 ymH~~~~gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 100 YMHIWGVGDPAKLARKVRAALD 121 (123)
T ss_pred EEEEEecCCHHHHHHHHHHHHh
Confidence 5678887778888898888875
No 373
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=23.64 E-value=1.2e+02 Score=16.63 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCeeEEEEc
Q 048196 85 HEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~~~~~ 104 (115)
+++.+-|++.||.+..++..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~ 21 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNM 21 (68)
T ss_pred HHHHHHHHHcCCceEEEEcc
Confidence 57788899999999988765
No 374
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=23.52 E-value=2.7e+02 Score=19.77 Aligned_cols=26 Identities=8% Similarity=0.296 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196 24 SDDHCLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 24 ~d~~~~~iL~~~~~aL~pgg~lii~d 49 (115)
|......+++.++.+|++|++-++.=
T Consensus 135 P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 135 PKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred hHHHHHHHhhhhhhhhccCceeEEEe
Confidence 33334556778888999999987743
No 375
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.48 E-value=78 Score=18.58 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=13.6
Q ss_pred CceeCCHHHHHHHHHhCCCCe
Q 048196 78 SGKKRTKHEFLTLATGAGFSG 98 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~ 98 (115)
|...+|.+++.+-|++.||..
T Consensus 38 Nns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 38 NNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp S-SSS-HHHHHHHHHHTTTT-
T ss_pred CCCCCCHHHHHHHHHhcCcCC
Confidence 556677778877778888764
No 376
>PRK11018 hypothetical protein; Provisional
Probab=23.41 E-value=1.5e+02 Score=16.56 Aligned_cols=30 Identities=7% Similarity=-0.159 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCCCeeEEEEcCCceEEEEEE
Q 048196 84 KHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~ 114 (115)
...+.+|+++.|+++....... ..+.+.++
T Consensus 48 ~~di~~~~~~~G~~v~~~~~~~-g~~~~~I~ 77 (78)
T PRK11018 48 INNIPLDARNHGYTVLDIQQDG-PTIRYLIQ 77 (78)
T ss_pred HHHHHHHHHHcCCEEEEEEecC-CeEEEEEE
Confidence 3578888889999887665543 33444433
No 377
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=23.39 E-value=1.1e+02 Score=23.06 Aligned_cols=21 Identities=5% Similarity=0.113 Sum_probs=16.5
Q ss_pred HHHHHHHHhhCCCCCEEEEEe
Q 048196 29 LKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d 49 (115)
..+++.+.+.|+|||.++..-
T Consensus 319 ~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 319 KDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHcCCCeEEEEEe
Confidence 455667788999999998754
No 378
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=23.32 E-value=91 Score=16.35 Aligned_cols=15 Identities=7% Similarity=0.202 Sum_probs=10.2
Q ss_pred CHHHHHHHHHhCCCC
Q 048196 83 TKHEFLTLATGAGFS 97 (115)
Q Consensus 83 t~~e~~~ll~~aGf~ 97 (115)
|.++..+||+..||.
T Consensus 5 ~~~~v~~WL~~~gl~ 19 (66)
T PF07647_consen 5 SPEDVAEWLKSLGLE 19 (66)
T ss_dssp CHHHHHHHHHHTTCG
T ss_pred CHHHHHHHHHHCCcH
Confidence 566777777777764
No 379
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=23.21 E-value=1.6e+02 Score=19.54 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=33.3
Q ss_pred hCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCH-HHHHHHHHhCCCCeeEEEEc
Q 048196 38 SIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTK-HEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 38 aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~-~e~~~ll~~aGf~~~~~~~~ 104 (115)
++.+|.+++|+|-+...........+............ .---.|+. ..+..+.++.|+....+...
T Consensus 110 ~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v-~~vvd~~~~~g~~~l~~~~gv~v~sl~~~ 176 (187)
T PRK12560 110 GIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDV-ICVIEKTQNNGRKKLFTQTGINVKSLVKI 176 (187)
T ss_pred CCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEE-EEEEEecccchHHHHhhccCCcEEEEEEE
Confidence 46789999999988887643211100000000000000 00112332 34677778889877766655
No 380
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=23.20 E-value=72 Score=14.05 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=13.2
Q ss_pred CceeCCHHHHHHHHH-hCC
Q 048196 78 SGKKRTKHEFLTLAT-GAG 95 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~-~aG 95 (115)
+...-+.+|+..+++ +.|
T Consensus 13 ~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 13 GDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp SSSEEEHHHHHHHHHHHTT
T ss_pred CCCcCcHHHHHHHHHHhcC
Confidence 334568899999998 565
No 381
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=23.14 E-value=2.2e+02 Score=21.77 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=28.9
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
|++++=..-....|+....-|+++.+++.|.+.++++|...
T Consensus 184 DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 184 DVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred CEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 66666555444456666777788888888888888888653
No 382
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=23.07 E-value=1.2e+02 Score=21.33 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=40.7
Q ss_pred cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeC-CHHHHHHHHHhCCC
Q 048196 18 WILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKR-TKHEFLTLATGAGF 96 (115)
Q Consensus 18 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~r-t~~e~~~ll~~aGf 96 (115)
-+|....|+....-+=|...++.-+|.++..+...+-.+..- .....+.+.+.. .+.- +..++.++++++||
T Consensus 112 lvLd~V~DP~NlGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~-r~s~Ga~~~vp~------~~~~n~~~~~~~~~~~~G~ 184 (260)
T COG0566 112 LVLDGVTDPHNLGAIIRTADAFGVDGVILPKRRADPLNPKVI-RASAGAAFHVPV------IRVTNLARTLLELLKEAGF 184 (260)
T ss_pred EEEecCcCCcchhhHHhhHHHhCCCEEEECCCccCCccceeE-EecCChheecee------EEEeccHHHHHHHHHHcCe
Confidence 356667776655544444555555555544333322221110 000111122211 2222 57799999999999
Q ss_pred CeeEEEEc
Q 048196 97 SGTRFEWF 104 (115)
Q Consensus 97 ~~~~~~~~ 104 (115)
.++-...-
T Consensus 185 ~v~~t~~~ 192 (260)
T COG0566 185 WVVATSLD 192 (260)
T ss_pred EEEEECCC
Confidence 98765443
No 383
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=22.92 E-value=98 Score=19.57 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=20.2
Q ss_pred ccCChHHHHHHHHHHHhhCCCCC
Q 048196 21 HNWSDDHCLKLLKIYYKSIPEDG 43 (115)
Q Consensus 21 h~~~d~~~~~iL~~~~~aL~pgg 43 (115)
-|..|++..+++..+.++|.+++
T Consensus 109 ~D~~~edv~kv~~~i~e~l~~~~ 131 (135)
T COG4273 109 SDCKDEDVEKVARTIKEALTIKL 131 (135)
T ss_pred CCCCHHHHHHHHHHHHHHhhhcc
Confidence 37889999999999999998864
No 384
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=22.90 E-value=1.1e+02 Score=19.74 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhCCCCCEEEEEe
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d 49 (115)
+...|.-+.+.|+|||.+++.-
T Consensus 118 ~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 118 ILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHhhhcCCCEEEEEe
Confidence 3344444445689999987743
No 385
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=22.89 E-value=48 Score=23.75 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEee
Q 048196 27 HCLKLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 27 ~~~~iL~~~~~aL~pgg~lii~d~ 50 (115)
+-.++++++.+.|+|||.|+..-+
T Consensus 216 ~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 216 DYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 356889999999999999876543
No 386
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.68 E-value=89 Score=16.44 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=12.8
Q ss_pred HHHHHHHHHhCCCCe
Q 048196 84 KHEFLTLATGAGFSG 98 (115)
Q Consensus 84 ~~e~~~ll~~aGf~~ 98 (115)
.+...+.|+++||++
T Consensus 50 ~~~~~~~L~~~G~~v 64 (66)
T cd04908 50 PDKAKEALKEAGFAV 64 (66)
T ss_pred HHHHHHHHHHCCCEE
Confidence 568889999999975
No 387
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=22.62 E-value=38 Score=23.77 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEEeeec
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d~~~ 52 (115)
....|..++..|.|||.|++-|...
T Consensus 191 T~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 191 TKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 6889999999999999998855443
No 388
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=22.55 E-value=1.4e+02 Score=18.75 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=27.4
Q ss_pred EEEeccccccCChHHHHHHHHHHHhhC----CCCCEEEEEeeecCCC
Q 048196 13 AIFMKWILHNWSDDHCLKLLKIYYKSI----PEDGKVIVVESILPEL 55 (115)
Q Consensus 13 ~v~~~~vlh~~~d~~~~~iL~~~~~aL----~pgg~lii~d~~~~~~ 55 (115)
+-+++++. ++++.-.++++.-..-+ ++|.++.|+|.+.|-.
T Consensus 47 vaf~~WA~--ls~e~e~~~l~~~~~l~~~dW~sG~rlWiiD~iAPfG 91 (133)
T PF02794_consen 47 VAFCSWAF--LSEEAEARYLEDPRSLSPEDWNSGDRLWIIDWIAPFG 91 (133)
T ss_pred EEEEEhhc--CCHHHHHHHHcCCCCCCchhcCCCCeEEEEEEECCCC
Confidence 34555665 67766667776655333 2489999999998854
No 389
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=22.42 E-value=65 Score=21.05 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=24.4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHhhCC
Q 048196 12 DAIFMKWILHNWSDDHCLKLLKIYYKSIP 40 (115)
Q Consensus 12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~ 40 (115)
|+++..+++-++.-++.+++.+.-+.|.+
T Consensus 107 d~vvi~svfv~~~a~d~~kiY~ynY~A~k 135 (170)
T COG1795 107 DVVVIVSVFVHPEAEDKRKIYQYNYGATK 135 (170)
T ss_pred CEEEEEEeEeCcccccHHHHHHHhHHHHH
Confidence 99999999988998889999988776643
No 390
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.23 E-value=88 Score=20.12 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=16.2
Q ss_pred CceeCCHHHHHHHHHhCCCCeeE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTR 100 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~ 100 (115)
+|..|..+-..++|+++||+++.
T Consensus 23 DgHd~gakvia~~l~d~GfeVi~ 45 (143)
T COG2185 23 DGHDRGAKVIARALADAGFEVIN 45 (143)
T ss_pred cccccchHHHHHHHHhCCceEEe
Confidence 55666677777888888876653
No 391
>TIGR01634 tail_P2_I phage tail protein, P2 protein I family. This model represents the family of phage P2 protein I and related tail proteins from a number of temperate phage of Gram-negative bacteria. This alignment is built as a fragment model and identifies some phage tail proteins with strong but local similarity to members of the seed alignment.
Probab=22.19 E-value=2.1e+02 Score=18.23 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=32.3
Q ss_pred cCChHHHHHHHHHHHh-------------hCCC-CCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHH
Q 048196 22 NWSDDHCLKLLKIYYK-------------SIPE-DGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEF 87 (115)
Q Consensus 22 ~~~d~~~~~iL~~~~~-------------aL~p-gg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~ 87 (115)
+|+++..+++++.+.. ++++ ||-+=|.|-...+.+..| ..|.+.+-+...+..+-+..++
T Consensus 55 ~w~~~~KR~~Ik~A~~~hr~kGT~~avr~~l~~lg~~~~i~EW~e~~p~g~P------~tF~i~~~~~~~g~~~~~~~~~ 128 (139)
T TIGR01634 55 TWPEKVKRDVIRSAYFIHRHKGTIGAVRRVVEPFGGIVNITEWWQTGPPGPP------GTFELTLTVSGSGGTEETYLEV 128 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeEEeehhccCCCCCC------eEEEEEEEccCCCCCHHHHHHH
Confidence 5677777777665443 2222 455656776544432322 1233333321112333445566
Q ss_pred HHHHHhC
Q 048196 88 LTLATGA 94 (115)
Q Consensus 88 ~~ll~~a 94 (115)
.+++.++
T Consensus 129 ~~~i~~~ 135 (139)
T TIGR01634 129 ERLIADV 135 (139)
T ss_pred HHHHHhc
Confidence 6666543
No 392
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=22.12 E-value=2.1e+02 Score=17.92 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 24 SDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 24 ~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
+.++-.++-+++.+.|++|..+++.
T Consensus 4 s~~~t~~l~~~l~~~l~~~~~i~l~ 28 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDFGTVVLLK 28 (133)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 3455667778888888888776654
No 393
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=22.11 E-value=1.2e+02 Score=17.34 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=22.3
Q ss_pred cCChHHHHHHHHHHHhhCCC-CCEEEEEee
Q 048196 22 NWSDDHCLKLLKIYYKSIPE-DGKVIVVES 50 (115)
Q Consensus 22 ~~~d~~~~~iL~~~~~aL~p-gg~lii~d~ 50 (115)
+.++++..++++++.+.+.. ||.+.-.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~gg~v~~~~~ 41 (92)
T PF01250_consen 12 DLSEEEIKKLIERVKKIIEKNGGVVRSVEN 41 (92)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 56788999999999998876 566655554
No 394
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=22.04 E-value=97 Score=18.63 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.0
Q ss_pred CCCceeCCHHHHHHHHHhCCCCee
Q 048196 76 NPSGKKRTKHEFLTLATGAGFSGT 99 (115)
Q Consensus 76 ~~~g~~rt~~e~~~ll~~aGf~~~ 99 (115)
...+..-|.+.+.++++.+|.++.
T Consensus 12 ~d~~~~~Tae~I~~ilkAaGveve 35 (103)
T cd05831 12 HDDGIEITADNINALLKAAGVNVE 35 (103)
T ss_pred ccCCCCCCHHHHHHHHHHcCCccc
Confidence 357888999999999999996654
No 395
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=21.98 E-value=1e+02 Score=21.75 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCCCCEEEEEee
Q 048196 30 KLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 30 ~iL~~~~~aL~pgg~lii~d~ 50 (115)
..++.+.+.|+++|+++++-.
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEee
Confidence 467788889999999998764
No 396
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=21.78 E-value=1.8e+02 Score=20.21 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=21.8
Q ss_pred ceeCCHHHH-HHHHHhCCCCeeEEEEcCC
Q 048196 79 GKKRTKHEF-LTLATGAGFSGTRFEWFTC 106 (115)
Q Consensus 79 g~~rt~~e~-~~ll~~aGf~~~~~~~~~~ 106 (115)
...-|-.|. +.+|+++|...+++.++++
T Consensus 34 ~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G 62 (222)
T PF04298_consen 34 SSGMTGAEVARHILDRNGLSDVRVERVPG 62 (222)
T ss_pred CCCCCHHHHHHHHHHHCCCCCeeEEEeCC
Confidence 334566777 7889999999999998864
No 397
>PRK10475 23S rRNA pseudouridine synthase F; Provisional
Probab=21.69 E-value=1.1e+02 Score=21.85 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=22.6
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEEcC-CceE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEWFT-CNLW 109 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~ 109 (115)
.|+.| +++.+|+..|+++.+.+.+. +.+.
T Consensus 183 eGk~r---qIRrm~~~~G~~V~~L~R~~ig~l~ 212 (290)
T PRK10475 183 QGLNR---QIRRMCEHFGYEVTKLERTRIMNVS 212 (290)
T ss_pred CCcCH---HHHHHHHHcCCEEeEEEEEEECCEE
Confidence 66654 99999999999999887763 4433
No 398
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.53 E-value=2.7e+02 Score=21.49 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=33.1
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
.|+|+.--.=.|-.++..-+=+..+.++++|+-.|+++|......
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 377777665556666555566677888999999999998776654
No 399
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=21.40 E-value=1.2e+02 Score=24.64 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEE
Q 048196 28 CLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~ 48 (115)
-..+++.+.+.|+|||.+++.
T Consensus 635 y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 635 HVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 467888899999999988763
No 400
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.32 E-value=1.5e+02 Score=17.94 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=20.8
Q ss_pred CHHHHHHHHHhCCCCeeEEEEcCCce
Q 048196 83 TKHEFLTLATGAGFSGTRFEWFTCNL 108 (115)
Q Consensus 83 t~~e~~~ll~~aGf~~~~~~~~~~~~ 108 (115)
...|+.+.|.+.||+..+.-..++++
T Consensus 12 da~~l~~~L~d~~fraTkLAsTGGFl 37 (109)
T COG3870 12 DANELEDALTDKNFRATKLASTGGFL 37 (109)
T ss_pred cHHHHHHHHHhCCceeEEeeccCcee
Confidence 45788999999999999888776543
No 401
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=21.27 E-value=1.1e+02 Score=18.98 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=16.5
Q ss_pred CHHHHHHHHHhCCCCeeEEEEc
Q 048196 83 TKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 83 t~~e~~~ll~~aGf~~~~~~~~ 104 (115)
...++.+.++++||.++..+.+
T Consensus 16 ~~g~Il~~i~~~Gf~I~~~k~~ 37 (133)
T cd00595 16 LLGEIIMRIEDAGFEIVAMKEL 37 (133)
T ss_pred cHHHHHHHHHHcCCEEEEeeee
Confidence 3567888888888888776554
No 402
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=21.17 E-value=89 Score=18.88 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.1
Q ss_pred CCceeCCHHHHHHHHHhCCCCee
Q 048196 77 PSGKKRTKHEFLTLATGAGFSGT 99 (115)
Q Consensus 77 ~~g~~rt~~e~~~ll~~aGf~~~ 99 (115)
.+|...|.+.+.++|..+|-++.
T Consensus 12 ~~g~~~ta~~I~~IL~aaGveVe 34 (105)
T cd04411 12 KGGKELTEDKIKELLSAAGAEIE 34 (105)
T ss_pred hcCCCCCHHHHHHHHHHcCCCcC
Confidence 46777999999999999996553
No 403
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=21.13 E-value=2.1e+02 Score=20.20 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=26.0
Q ss_pred CCceeCCHHHHHHHHHhCCCCeeEEEEcCCceEE
Q 048196 77 PSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWV 110 (115)
Q Consensus 77 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~l 110 (115)
..|++.++.|++.++.+.|+...+...+.+...|
T Consensus 99 ~~gk~f~p~EI~~LL~~~~~~~~~~~~i~~g~~v 132 (246)
T PRK11611 99 PTGKEFMPREISLLLGEEGNPLSSQEVLEGGESL 132 (246)
T ss_pred CCCcccCHHHHHHHHhccCCCcceeEEeCCCCEE
Confidence 4688999999999999999887665555544433
No 404
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=21.09 E-value=1.4e+02 Score=22.08 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=29.1
Q ss_pred CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196 9 PKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL 55 (115)
Q Consensus 9 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~ 55 (115)
+.+|-|+|...- .+.+.+..+.+.+++||.+...+.+.++.
T Consensus 255 ~~aDrIim~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 255 GVADRIIMGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred ccCCEEEeCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 346877776543 24566777777888899999988776654
No 405
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=21.01 E-value=74 Score=22.07 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=8.4
Q ss_pred CceeCCHHHHHHHHHhCCC
Q 048196 78 SGKKRTKHEFLTLATGAGF 96 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf 96 (115)
+-+.||..+++.+|.++|-
T Consensus 100 DN~nRt~~~ir~~~~K~gg 118 (234)
T PF01709_consen 100 DNKNRTVSDIRSIFKKNGG 118 (234)
T ss_dssp S-HHHHHHHHHHHHHTTT-
T ss_pred CCHhHHHHHHHHHHHHcCc
Confidence 3344455555555555443
No 406
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.96 E-value=1.1e+02 Score=16.02 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=13.5
Q ss_pred CHHHHHHHHHhCCCCee
Q 048196 83 TKHEFLTLATGAGFSGT 99 (115)
Q Consensus 83 t~~e~~~ll~~aGf~~~ 99 (115)
..++..+.|+++||++.
T Consensus 53 ~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 53 NPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHCCCeee
Confidence 34699999999999753
No 407
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=20.95 E-value=1.2e+02 Score=21.70 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCCCCEEEEEee
Q 048196 30 KLLKIYYKSIPEDGKVIVVES 50 (115)
Q Consensus 30 ~iL~~~~~aL~pgg~lii~d~ 50 (115)
..++...+.|++||+++++-.
T Consensus 237 ~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHHHHHhCcCCcEEEEEee
Confidence 467778889999999998764
No 408
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=20.91 E-value=1.7e+02 Score=20.48 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEE
Q 048196 26 DHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 26 ~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
+-...+|.+++.+|++++.+.+.
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAVS 213 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEEE
T ss_pred CcHHHHHHHHHhhCCCCcEEEEe
Confidence 44789999999999666666663
No 409
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=20.88 E-value=45 Score=17.48 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=14.7
Q ss_pred EeccccccCChHHHHHHHHHHHhhCCC
Q 048196 15 FMKWILHNWSDDHCLKLLKIYYKSIPE 41 (115)
Q Consensus 15 ~~~~vlh~~~d~~~~~iL~~~~~aL~p 41 (115)
++++|-|.+|++ ....=+.+.+-|..
T Consensus 1 Fla~va~cYp~~-~~~Fp~~L~~lL~~ 26 (52)
T PF08158_consen 1 FLAHVAHCYPKE-TKDFPQELIDLLRN 26 (52)
T ss_pred CccccccccHHH-HHHHHHHHHHHHHh
Confidence 457788888874 33444444444443
No 410
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.86 E-value=3.6e+02 Score=21.56 Aligned_cols=60 Identities=20% Similarity=0.372 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce---eCCHHHHHHHHHhCCCCee
Q 048196 27 HCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK---KRTKHEFLTLATGAGFSGT 99 (115)
Q Consensus 27 ~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~---~rt~~e~~~ll~~aGf~~~ 99 (115)
+.+++|+++++ +|+.||+....|... .-..+|-.++.. +|+ .-+..+..+.|+++|+...
T Consensus 208 ~vv~~Lk~lA~----~grtVi~tIHQPss~-------lf~lFD~l~lLs--~G~~vy~G~~~~~~~ff~~~G~~~P 270 (613)
T KOG0061|consen 208 QVVQLLKRLAR----SGRTVICTIHQPSSE-------LFELFDKLLLLS--EGEVVYSGSPRELLEFFSSLGFPCP 270 (613)
T ss_pred HHHHHHHHHHh----CCCEEEEEEeCCcHH-------HHHHHhHhhhhc--CCcEEEecCHHHHHHHHHhCCCCCC
Confidence 34555555544 488888776655431 234455555432 443 3467899999999999854
No 411
>PF03434 DUF276: DUF276 ; InterPro: IPR005096 This family is specific to Borrelia burgdorferi (Lyme disease spirochete). The protein is encoded on extrachromosomal DNA and is of unknown function.
Probab=20.85 E-value=1.1e+02 Score=21.59 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHHHhhCCCCCEEE
Q 048196 24 SDDHCLKLLKIYYKSIPEDGKVI 46 (115)
Q Consensus 24 ~d~~~~~iL~~~~~aL~pgg~li 46 (115)
-+++....|......|+|||..+
T Consensus 53 ie~eii~~ln~lFsk~K~~g~Yw 75 (291)
T PF03434_consen 53 IEEEIINELNLLFSKMKPGGTYW 75 (291)
T ss_pred HHHHHHHHHHHHHHhcCCCchHH
Confidence 36778899999999999998764
No 412
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=20.82 E-value=1.5e+02 Score=17.28 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=17.0
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecC
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESILP 53 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~~ 53 (115)
...|..+...++-||.+++.=+-.+
T Consensus 25 pnal~a~~gtv~gGGllill~p~~~ 49 (92)
T PF08351_consen 25 PNALAALAGTVRGGGLLILLLPPWE 49 (92)
T ss_dssp HHHHHHHHTTB-TT-EEEEEES-GG
T ss_pred HHHHHHHhcceecCeEEEEEcCCHH
Confidence 4678888889999999999654433
No 413
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=20.82 E-value=1.7e+02 Score=16.34 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCCeeEEEEc
Q 048196 85 HEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 85 ~e~~~ll~~aGf~~~~~~~~ 104 (115)
+++.+-|++.||....++..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m 21 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNM 21 (69)
T ss_pred HHHHHHHHHcCCceeEEEcc
Confidence 57788899999998887665
No 414
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=20.77 E-value=2.3e+02 Score=21.38 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhCC------------CCCEEEEEeeecCCCCCCc
Q 048196 26 DHCLKLLKIYYKSIP------------EDGKVIVVESILPELPETS 59 (115)
Q Consensus 26 ~~~~~iL~~~~~aL~------------pgg~lii~d~~~~~~~~~~ 59 (115)
+++.++.+++.++|. ++|+|+|.|.-....+.++
T Consensus 227 ~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH 272 (375)
T COG0026 227 AQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGH 272 (375)
T ss_pred HHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccc
Confidence 468899999999986 6778888887665554443
No 415
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=20.76 E-value=1.2e+02 Score=19.28 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=22.0
Q ss_pred CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196 2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV 48 (115)
Q Consensus 2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~ 48 (115)
||+++ +.+. .|.++. +...+.+.+...+++++. .+.++|.+++.
T Consensus 66 ~D~~~~~~~~~~~d~vi~-n~Py~~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 66 GDALKFDLPKLQPYKVVG-NLPYNISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred CchhcCCccccCCCEEEE-CCCcccHHHHHHHHHhcC--CCcceEEEEEE
Confidence 67777 5554 377654 444445443344444321 13356666553
No 416
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=20.76 E-value=1.4e+02 Score=19.92 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhCCCCCEEEE
Q 048196 27 HCLKLLKIYYKSIPEDGKVIV 47 (115)
Q Consensus 27 ~~~~iL~~~~~aL~pgg~lii 47 (115)
...+.++++.+.|+.|+.++|
T Consensus 83 ~~~~~~~~~~~~L~~G~~l~I 103 (210)
T cd07986 83 KNRESLREALRHLKNGGALII 103 (210)
T ss_pred hhHHHHHHHHHHHhCCCEEEE
Confidence 457889999999999988776
No 417
>smart00463 SMR Small MutS-related domain.
Probab=20.71 E-value=1.2e+02 Score=16.64 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=18.1
Q ss_pred cccCChHHHHHHHHHHHhhCCCCC
Q 048196 20 LHNWSDDHCLKLLKIYYKSIPEDG 43 (115)
Q Consensus 20 lh~~~d~~~~~iL~~~~~aL~pgg 43 (115)
||.++-+++...|.+..+.+...+
T Consensus 6 LHG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 6 LHGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcC
Confidence 789998888888877776555443
No 418
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=20.64 E-value=2.4e+02 Score=20.88 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=16.8
Q ss_pred HHHHHHhhCCCCCEEEEEeeec
Q 048196 31 LLKIYYKSIPEDGKVIVVESIL 52 (115)
Q Consensus 31 iL~~~~~aL~pgg~lii~d~~~ 52 (115)
-+....++|++||+++++-...
T Consensus 241 ~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 241 TLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred hHHHHHHHHhcCCEEEEECCCC
Confidence 4556667899999999987653
No 419
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=20.63 E-value=1.1e+02 Score=21.78 Aligned_cols=22 Identities=5% Similarity=0.169 Sum_probs=17.9
Q ss_pred HHHHHHHhhCCCCCEEEEEeee
Q 048196 30 KLLKIYYKSIPEDGKVIVVESI 51 (115)
Q Consensus 30 ~iL~~~~~aL~pgg~lii~d~~ 51 (115)
..+....++|++||+++++-..
T Consensus 241 ~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 241 QTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred HHHHHHHHHhhcCCEEEEEccC
Confidence 4677788899999999988654
No 420
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=20.53 E-value=1.8e+02 Score=16.37 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196 29 LKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF 104 (115)
Q Consensus 29 ~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 104 (115)
.-.+++..+.|++|+.+.+ ..+++. +..++..|.++.|.+.......
T Consensus 23 ll~~kk~l~~l~~G~~l~V---~~dd~~--------------------------~~~di~~~~~~~G~~~~~~~~~ 69 (81)
T PRK00299 23 VMMVRKTVRNMQPGETLLI---IADDPA--------------------------TTRDIPSFCRFMDHELLAQETE 69 (81)
T ss_pred HHHHHHHHHcCCCCCEEEE---EeCCcc--------------------------HHHHHHHHHHHcCCEEEEEEec
Confidence 3455666677788887665 233221 2357777888889888765543
No 421
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=20.51 E-value=91 Score=18.98 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.3
Q ss_pred CCceeCCHHHHHHHHHhCCCCee
Q 048196 77 PSGKKRTKHEFLTLATGAGFSGT 99 (115)
Q Consensus 77 ~~g~~rt~~e~~~ll~~aGf~~~ 99 (115)
.+|+.-|.+.+.++|+.+|-++.
T Consensus 12 ~~g~~it~e~I~~IL~AAGveVe 34 (106)
T PRK06402 12 SAGKEINEDNLKKVLEAAGVEVD 34 (106)
T ss_pred hcCCCCCHHHHHHHHHHcCCCcc
Confidence 47778999999999999996543
No 422
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=20.45 E-value=80 Score=18.15 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHhhCCCCCE
Q 048196 25 DDHCLKLLKIYYKSIPEDGK 44 (115)
Q Consensus 25 d~~~~~iL~~~~~aL~pgg~ 44 (115)
..+...+|+.+++||+..|-
T Consensus 14 ~~~~~~iL~~Vy~AL~EKGY 33 (79)
T PF06135_consen 14 EKEIREILKQVYAALEEKGY 33 (79)
T ss_pred hhhHHHHHHHHHHHHHHcCC
Confidence 45689999999999987543
No 423
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=20.45 E-value=1.3e+02 Score=21.65 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhCCCCCEEEEEe
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d 49 (115)
..+....+.++|+.||+|+++=
T Consensus 44 I~~a~~~~~~~l~~ggrl~~~G 65 (296)
T PRK12570 44 IAQAVDKIVAAFKKGGRLIYMG 65 (296)
T ss_pred HHHHHHHHHHHHHcCCeEEEEC
Confidence 4455566777889999998865
No 424
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=20.39 E-value=2.1e+02 Score=18.94 Aligned_cols=34 Identities=6% Similarity=0.169 Sum_probs=23.5
Q ss_pred ccEEEeccccccCChHHHHHHH-HHHHhhCCCCCEEEEEe
Q 048196 11 GDAIFMKWILHNWSDDHCLKLL-KIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 11 ~D~v~~~~vlh~~~d~~~~~iL-~~~~~aL~pgg~lii~d 49 (115)
+|++++ -.||+...++. ..+...|+||-.|+..+
T Consensus 61 aDvV~~-----L~PD~~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 61 ADVVML-----LLPDEVQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp -SEEEE------S-HHHHHHHHHHHHHHHS-TT-EEEESS
T ss_pred CCEEEE-----eCChHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 476664 27888888888 88888999999888765
No 425
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=20.16 E-value=3.5e+02 Score=19.56 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=19.1
Q ss_pred CceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196 78 SGKKRTKHEFLTLATGAGFSGTRFEW 103 (115)
Q Consensus 78 ~g~~rt~~e~~~ll~~aGf~~~~~~~ 103 (115)
+...-+..++.++++++|++..+++.
T Consensus 167 s~~~~~~~~i~~~ak~~G~~~~~VVk 192 (285)
T COG1831 167 SLDEETYEEIAEMAKEAGIKPYRVVK 192 (285)
T ss_pred CCChHHHHHHHHHHHHhCCCcceeEe
Confidence 34444677899999999997776643
No 426
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=20.13 E-value=1.4e+02 Score=21.34 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhCCCCCEEEEEe
Q 048196 28 CLKLLKIYYKSIPEDGKVIVVE 49 (115)
Q Consensus 28 ~~~iL~~~~~aL~pgg~lii~d 49 (115)
..+....+.++|+.||+|++.=
T Consensus 43 I~~av~~~~~~l~~gGrl~~~G 64 (291)
T TIGR00274 43 IAAAVEQIVQAFQQGGRLIYIG 64 (291)
T ss_pred HHHHHHHHHHHHhcCCEEEEEC
Confidence 3455566667888999998865
Done!