BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048197
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/437 (45%), Positives = 280/437 (64%), Gaps = 9/437 (2%)
Query: 45 CNIQDLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPEL 104
C +++L A +P +R E+EAG TE WDQ++++ QCA V + RH I+ +GL++P ++N P+L
Sbjct: 27 CRLENLRAQDPVRRAEAEAGFTEVWDQDNDEFQCAGVNMIRHTIRPKGLLLPGFSNAPKL 86
Query: 105 FYVVQGRGIHGAVFPGCPETYXXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANW 164
+V QG GI G PGC ETY HQK+R REGDL+ +P G ++W
Sbjct: 87 IFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHW 146
Query: 165 IYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXX 224
+YN G S+LV++ D N NQ+D +LRKFYL G P+
Sbjct: 147 MYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPE-------QVERGVEEWERSSRK 199
Query: 225 XXXXXXXXNLFRGFDERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEEELRVLSPQRGRX 284
N+F GF + L EAF ++ L+ KL+ ++ IV+V+E+ VL P++
Sbjct: 200 GSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLPEKDEE 259
Query: 285 XXXXXXXXXXGS-GDNGIEETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFNLPILRY 343
S +NG+EETICT++LK NI AD +NPRGGR++T N LPILR
Sbjct: 260 ERSRGRYIESESESENGLEETICTLRLKQNIGRSERADVFNPRGGRISTANYHTLPILRQ 319
Query: 344 IQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVV 403
++LSAE+G LY NAM+APH+ +N+HSV+Y TRGN R+Q+V G++VFDG++REGQ++++
Sbjct: 320 VRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMI 379
Query: 404 PQGFAVVKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRL 463
PQ F V+KRAS+RG EWI+FKTND A T+ LAGR S +R LPL V+ N +++SR+EAQRL
Sbjct: 380 PQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQMRMLPLGVLSNMYRISREEAQRL 439
Query: 464 KYNRQELTVFTPGPRSQ 480
KY +QE+ V +PG RSQ
Sbjct: 440 KYGQQEMRVLSPG-RSQ 455
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/446 (45%), Positives = 272/446 (60%), Gaps = 26/446 (5%)
Query: 45 CNIQDLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPEL 104
C I L ALEP R+++E G+TE WD N+++ +CA V+V R I+ GL++PS+T+ PEL
Sbjct: 14 CQIDRLTALEPTNRIQAERGLTEVWDSNEQEFRCAGVSVIRRTIEPHGLLLPSFTSAPEL 73
Query: 105 FYVVQGRGIHGAVFPGCPETYXXXXXXXXXXXXXX----------------XXXHQKVRQ 148
Y+ QG GI G + PGCPETY HQK+R
Sbjct: 74 IYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRH 133
Query: 149 IREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQ-FLRKFYLGGNPQPQLXX 207
+REGD+ A+P G ++W YN+G LV V L+D N NQLD+ F +FYL G PQ +
Sbjct: 134 LREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKPQQE--- 190
Query: 208 XXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVNPDLISKLQRPQMQKGII 267
N+FRGF+ RLLAE+F V+ ++ KLQ Q +G I
Sbjct: 191 ------HSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNI 244
Query: 268 VRVEEELRVLSPQRGRXXXXXXXXXXXGSGDNGIEETICTMKLKHNINDPSGADAYNPRG 327
VRV+E L V+ P NG+EETIC+ +L N++DPS AD Y P
Sbjct: 245 VRVQEGLHVIKPPSRAWEEREQGSRGSRYLPNGVEETICSARLAVNVDDPSKADVYTPEA 304
Query: 328 GRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENG 387
GR+TTVN FNLPILR+++LSA KG LY+NAMMAPH+NLNAH+++Y RG GR+QIV + G
Sbjct: 305 GRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQG 364
Query: 388 ENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLD 447
++VFD ++ GQL+VVPQ FA+VK+A G EW+SFKT++ A LAGR S IR LP+D
Sbjct: 365 QSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWVSFKTSENAMFQSLAGRTSAIRSLPID 424
Query: 448 VIQNSFQVSRDEAQRLKYNRQELTVF 473
V+ N +Q+SR+EA LK+NR E T+F
Sbjct: 425 VVSNIYQISREEAFGLKFNRPETTLF 450
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/448 (37%), Positives = 243/448 (54%), Gaps = 27/448 (6%)
Query: 45 CNIQDLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPEL 104
C IQ LNAL+P R+ESE G+ E W+ N++ QCA VA+ R + + L PSYTN P+
Sbjct: 12 CQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQE 71
Query: 105 FYVVQGRGIHGAVFPGCPETYXXXXXXXXXXXXXX-XXXHQKVRQIREGDLVALPTGSAN 163
Y+ QG+GI G ++PGCP T+ HQK+ REGDL+A+PTG A
Sbjct: 72 IYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAW 131
Query: 164 WIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXX 223
W+YN+ + +V V+++D + +NQLDQ R+FYL GN Q Q
Sbjct: 132 WMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGN-QEQEFLKYQQEQGGHQSQKGKH 190
Query: 224 XXXXXXXXXNLFRGFDERLLAEAFNVNPDLISKLQ--RPQMQKGIIVRVEEELRVLSPQ- 280
++ GF L AF+V+ + LQ KG IV V+ L V+ P
Sbjct: 191 QQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPT 250
Query: 281 ---------------------RGRXXXXXXXXXXXG-SGDNGIEETICTMKLKHNINDPS 318
+G+ S NGI+ETICTM+L+HNI S
Sbjct: 251 DEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTS 310
Query: 319 GADAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNG 378
D YNP+ G VTT + P L +++LSAE G+L +NAM PH+NLNA+S++Y G
Sbjct: 311 SPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRA 370
Query: 379 RMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFKTNDVAKTSQLAGRA 438
+Q+V NGE VFDG+++EG++++VPQ F V R+ + E++SFKTND LAG
Sbjct: 371 LIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGAN 430
Query: 439 SVIRGLPLDVIQNSFQVSRDEAQRLKYN 466
S++ LP +VIQ++F + +A+++K N
Sbjct: 431 SLLNALPEEVIQHTFNLKSQQARQIKNN 458
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/446 (37%), Positives = 242/446 (54%), Gaps = 27/446 (6%)
Query: 47 IQDLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFY 106
IQ LNAL+P R+ESE G+ E W+ N++ QCA VA+ R + + L PSYTN P+ Y
Sbjct: 14 IQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIY 73
Query: 107 VVQGRGIHGAVFPGCPETYXXXXXXXXXXXXXX-XXXHQKVRQIREGDLVALPTGSANWI 165
+ QG+GI G ++PGCP T+ HQK+ REGDL+A+PTG A W+
Sbjct: 74 IQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWM 133
Query: 166 YNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXX 225
YN+ + +V V+++D + +NQLDQ R+FYL GN Q Q
Sbjct: 134 YNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGN-QEQEFLKYQQEQGGHQSQKGKHQQ 192
Query: 226 XXXXXXXNLFRGFDERLLAEAFNVNPDLISKLQ--RPQMQKGIIVRVEEELRVLSPQ--- 280
++ GF L AF+V+ + LQ KG IV V+ L V+ P
Sbjct: 193 EEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDE 252
Query: 281 -------------------RGRXXXXXX-XXXXXGSGDNGIEETICTMKLKHNINDPSGA 320
+G+ S NGI+ETICTM+L+HNI S
Sbjct: 253 QQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSP 312
Query: 321 DAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRM 380
D YNP+ G VTT + P L +++LSAE G+L +NAM PH+NLNA+S++Y G +
Sbjct: 313 DIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALI 372
Query: 381 QIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFKTNDVAKTSQLAGRASV 440
Q+V NGE VFDG+++EG++++VPQ F V R+ + E++SFKTND LAG S+
Sbjct: 373 QVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSL 432
Query: 441 IRGLPLDVIQNSFQVSRDEAQRLKYN 466
+ LP +VIQ++F + +A+++K N
Sbjct: 433 LNALPEEVIQHTFNLKSQQARQIKNN 458
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 305 bits (782), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 168/448 (37%), Positives = 242/448 (54%), Gaps = 27/448 (6%)
Query: 45 CNIQDLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPEL 104
C IQ LNAL+P R+ESE G+ E W+ N++ QCA VA+ R + + L PSYTN P+
Sbjct: 12 CQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQE 71
Query: 105 FYVVQGRGIHGAVFPGCPETYXXXXXXXXXXXXXX-XXXHQKVRQIREGDLVALPTGSAN 163
Y+ QG+GI G ++PG P T+ HQK+ REGDL+A+PTG A
Sbjct: 72 IYIQQGKGIFGMIYPGSPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAW 131
Query: 164 WIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXX 223
W+YN+ + +V V+++D + +NQLDQ R+FYL GN Q Q
Sbjct: 132 WMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGN-QEQEFLKYQQEQGGHQSQKGKH 190
Query: 224 XXXXXXXXXNLFRGFDERLLAEAFNVNPDLISKLQ--RPQMQKGIIVRVEEELRVLSPQ- 280
++ GF L AF+V+ + LQ KG IV V+ L V+ P
Sbjct: 191 QQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPT 250
Query: 281 ---------------------RGRXXXXXXXXXXXG-SGDNGIEETICTMKLKHNINDPS 318
+G+ S NGI+ETICTM+L+HNI S
Sbjct: 251 DEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTS 310
Query: 319 GADAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNG 378
D YNP+ G VTT + P L +++LSAE G+L +NAM PH+NLNA+S++Y G
Sbjct: 311 SPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRA 370
Query: 379 RMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFKTNDVAKTSQLAGRA 438
+Q+V NGE VFDG+++EG++++VPQ F V R+ + E++SFKTND LAG
Sbjct: 371 LIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGAN 430
Query: 439 SVIRGLPLDVIQNSFQVSRDEAQRLKYN 466
S++ LP +VIQ++F + +A+++K N
Sbjct: 431 SLLNALPEEVIQHTFNLKSQQARQIKNN 458
>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|B Chain B, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|C Chain C, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|D Chain D, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|E Chain E, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|F Chain F, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
Length = 466
Score = 304 bits (779), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 263/479 (54%), Gaps = 72/479 (15%)
Query: 45 CNIQDLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPEL 104
C + LNALEP +++EAG E WD + QL+C+ V+ R+ I+ +GL +PS+ +T +L
Sbjct: 7 CQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKL 66
Query: 105 FYVVQ-----GRGIHG--------AVF-PGCPETYXXXXXXXXXXXXXXXX--------- 141
+V + GR + G +VF PG +
Sbjct: 67 SFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQ 126
Query: 142 ---------------XHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDN 186
HQKV IR GD +A G A W YNDG LV+V+++D+ + N
Sbjct: 127 QGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQN 186
Query: 187 QLDQFLRKFYLGGN-PQPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAE 245
QLD+ R FYL GN PQ Q+ N+ GF +LA+
Sbjct: 187 QLDRNPRPFYLAGNNPQGQVWIEGREQQPQK----------------NILNGFTPEVLAK 230
Query: 246 AFNVNPDLISKLQRPQMQKGIIVRVEEELRVLSP----QRGRXXXXXXXXXXXGSGDNGI 301
AF ++ +LQ Q +G I+RV+ V+ P QR + NG+
Sbjct: 231 AFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQRPQEEV------------NGL 278
Query: 302 EETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAP 361
EETIC+ + N++DPS AD Y P+ G ++T+N ++LPILR+++LSA +G++ QNAM+ P
Sbjct: 279 EETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLP 338
Query: 362 HWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWI 421
WN NA++V+Y+T G +Q+V +NG+ VFDGQ+ +GQL+ +PQGF+VVKRA++ WI
Sbjct: 339 QWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWI 398
Query: 422 SFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKYNRQELTV-FTPGPRS 479
FKTN A+ + LAGR SV+RGLPL+VI N +Q+S +EA+R+K+N E T+ + GP S
Sbjct: 399 EFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGPAS 457
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/490 (35%), Positives = 243/490 (49%), Gaps = 60/490 (12%)
Query: 45 CNIQDLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPEL 104
C Q LNA P R+ESE G E W+ N+++ +CA VA+ R +++ L P Y+N P+
Sbjct: 12 CQFQRLNAQRPDNRIESEGGYIETWNPNNQEFECAGVALSRLVLRRNALRRPFYSNAPQE 71
Query: 105 FYVVQGRGIHGAVFPGCPETYXXXXXXXXXXXXXX--------------XXXHQKVRQIR 150
++ QGRG G +FPGCP TY HQKV +
Sbjct: 72 IFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFN 131
Query: 151 EGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGN---------- 200
EGDL+A+PTG A W+YND +++V V+L D N+DNQLDQF R+F L GN
Sbjct: 132 EGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAGNHEQEFLRYQQ 191
Query: 201 ----------------PQPQLXXXXXXXXXXXXXXXXXXXXXXXXXXX-NLFRGFDERLL 243
PQ Q N+F GF L
Sbjct: 192 QSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEFL 251
Query: 244 AEAFNVNPDLISKLQRPQ---MQKGIIVRVEEELRVLSPQRGR---------------XX 285
A+AF V+ I + R + ++G IV V LR+LSP R R
Sbjct: 252 AQAFQVDDRQIVQNLRGENESEEQGAIVTVRGGLRILSPDRKRGADEEEEYDEDEYEYDE 311
Query: 286 XXXXXXXXXGSGDNGIEETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFNLPILRYIQ 345
NGIEETICT +K NI D YNP+ G + T N NL ILR++
Sbjct: 312 EDRRRGRGSRGSGNGIEETICTATVKKNIGRNRSPDIYNPQAGSLKTANELNLLILRWLG 371
Query: 346 LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQ 405
LSAE GNLY+NA+ PH+N NAHS++Y RG +Q+V NG V+D +++EG ++VVPQ
Sbjct: 372 LSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQ 431
Query: 406 GFAVVKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKY 465
FAV ++ + E+++FKT+ + LAG SVI LP +V+ NS+ + R++A++LK
Sbjct: 432 NFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENSVIDNLPEEVVANSYGLPREQARQLK- 490
Query: 466 NRQELTVFTP 475
N F P
Sbjct: 491 NNNPFKFFVP 500
>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|B Chain B, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|C Chain C, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|D Chain D, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|E Chain E, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|F Chain F, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3FZ3|A Chain A, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|B Chain B, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|C Chain C, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|D Chain D, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|E Chain E, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|F Chain F, Crystal Structure Of Almond Pru1 Protein
Length = 531
Score = 278 bits (710), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 147/353 (41%), Positives = 209/353 (59%), Gaps = 21/353 (5%)
Query: 143 HQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQ 202
HQK R+IREGD+VA+P G A W YNDG ELV V L V + NQLDQ RKFYL GNP+
Sbjct: 170 HQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPE 229
Query: 203 PQLXXXXXXXXXXXXXXXXX----------XXXXXXXXXXNLFRGFDERLLAEAFNVNPD 252
+ N+F GF+ +LLA+A NVN +
Sbjct: 230 NEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEE 289
Query: 253 LISKLQRPQMQKGIIVRVEEELRVLSPQRGRXXXXXXXXXXXGSGD-----------NGI 301
LQ + I++V L + P RGR NG+
Sbjct: 290 TARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQGEQLMANGL 349
Query: 302 EETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAP 361
EET C+++LK NI +P AD ++PR GR++T+N NLPILR+++LSAE+G Y+N + +P
Sbjct: 350 EETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSP 409
Query: 362 HWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWI 421
HWN+NAHSVVY+ RGN R+Q+V ENG+ + D ++++GQL +VPQ V+++A N+G E+
Sbjct: 410 HWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFEYF 469
Query: 422 SFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFT 474
+FKT + A + LAGR S +R LP +V+ N++Q+SR++A++LKYNRQE +
Sbjct: 470 AFKTEENAFINTLAGRTSFLRALPDEVLANAYQISREQARQLKYNRQETIALS 522
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 52/74 (70%)
Query: 52 ALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGR 111
A EP R+++EAG E W+ N QCA VA R IQ+ GL +PSY+N P+L Y+VQGR
Sbjct: 19 AREPDNRIQAEAGQIETWNFNQGDFQCAGVAASRITIQRNGLHLPSYSNAPQLIYIVQGR 78
Query: 112 GIHGAVFPGCPETY 125
G+ GAVF GCPET+
Sbjct: 79 GVLGAVFSGCPETF 92
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 122/170 (71%)
Query: 297 GDNGIEETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQN 356
GDNG+EET+CT KL+ NI S D YNP GR+ TV +LP+LR+++LSAE G+L++N
Sbjct: 309 GDNGLEETVCTAKLRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKN 368
Query: 357 AMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNR 416
AM PH+NLNA+S++Y +G R+Q+V NG VFDG++ G+ + VPQ +AV ++ +
Sbjct: 369 AMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLSD 428
Query: 417 GLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKYN 466
+++FKTND A ++LAG +SVI LPLDV+ +F + R+EA++LK N
Sbjct: 429 RFSYVAFKTNDRAGIARLAGTSSVINNLPLDVVAATFNLQRNEARQLKSN 478
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 131/237 (55%), Gaps = 11/237 (4%)
Query: 45 CNIQDLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPEL 104
C ++ L+ALEP R+ESE G+ E W+ N++Q +CA VA+ R +Q+ L P Y+N P+
Sbjct: 10 CQLERLDALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQRNALRRPYYSNAPQE 69
Query: 105 FYVVQGRGIHGAVFPGCPETYXXXXXXXXXXXXXXXXXHQKVRQIREGDLVALPTGSANW 164
++ QG G G VFPGCPET+ HQKV + REGD++A+PTG W
Sbjct: 70 IFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFW 129
Query: 165 IYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXX 224
+YND + ++ V+L D+ +S+NQLDQ R+FYL GN + +
Sbjct: 130 MYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEF---------LQYQHQQGGK 180
Query: 225 XXXXXXXXNLFRGFDERLLAEAFNVNPDLISKLQ--RPQMQKGIIVRVEEELRVLSP 279
N+F GF L +AFNVN ++ +LQ +KG IV+V+ L ++SP
Sbjct: 181 QEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSIISP 237
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 116/167 (69%), Gaps = 3/167 (1%)
Query: 299 NGIEETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAM 358
NG+EE ICTMKL NI PS AD YNP+ GR++T+N LP LR LSA+ LY+N +
Sbjct: 320 NGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGI 379
Query: 359 MAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGL 418
+PHWNLNA+SV+Y+TRG GR+++V G VFDG++R GQL+VVPQ F V ++ +GL
Sbjct: 380 YSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGL 439
Query: 419 EWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKY 465
E++ FKT+ A +S + V R +P +V+ NS+ + + + ++LKY
Sbjct: 440 EYVVFKTHHNAVSSYI---KDVFRAIPSEVLSNSYNLGQSQVRQLKY 483
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 123/243 (50%), Gaps = 8/243 (3%)
Query: 45 CNIQDLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPEL 104
C + +LNALEP RVESE G+ E W+ +LQCA V V + + + GL +PSY+ P++
Sbjct: 9 CQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQM 68
Query: 105 FYVVQGRGIHGAVFPGCPETYXXXXXXXXXXXXXXXX----XHQKVRQIREGDLVALPTG 160
VVQG+G G FPGCPET+ HQK+R EGD++ +P G
Sbjct: 69 IIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPG 128
Query: 161 SANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNP---QPQLXXXXXXXXXXXX 217
W YN G +V ++L+D N +NQLDQ R FYL GNP P+
Sbjct: 129 VPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPE-TMQQQQQQKSHG 187
Query: 218 XXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEEELRVL 277
++ GF + LA++FN N D KL+ P ++ IV VE L V+
Sbjct: 188 GRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVI 247
Query: 278 SPQ 280
SP+
Sbjct: 248 SPK 250
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 116/167 (69%), Gaps = 3/167 (1%)
Query: 299 NGIEETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAM 358
NG+EE ICTMKL NI PS AD YNP+ GR++T+N LP LR LSA+ LY+N +
Sbjct: 319 NGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGI 378
Query: 359 MAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGL 418
+PHWNLNA+SV+Y+TRG GR+++V G VFDG++R GQL+VVPQ F V ++ +GL
Sbjct: 379 YSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGL 438
Query: 419 EWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKY 465
E++ FKT+ A +S + V R +P +V+ NS+ + + + ++LKY
Sbjct: 439 EYVVFKTHHNAVSSYI---KDVFRAIPSEVLSNSYNLGQSQVRQLKY 482
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 123/243 (50%), Gaps = 8/243 (3%)
Query: 45 CNIQDLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPEL 104
C + +LNALEP RVESE G+ E W+ +LQCA V V + + + GL +PSY+ P++
Sbjct: 8 CQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQM 67
Query: 105 FYVVQGRGIHGAVFPGCPETYXXXXXXXXXXXXXXXX----XHQKVRQIREGDLVALPTG 160
VVQG+G G FPGCPET+ HQK+R EGD++ +P G
Sbjct: 68 IIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPG 127
Query: 161 SANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNP---QPQLXXXXXXXXXXXX 217
W YN G +V ++L+D N +NQLDQ R FYL GNP P+
Sbjct: 128 VPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPE-TMQQQQQQKSHG 186
Query: 218 XXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEEELRVL 277
++ GF + LA++FN N D KL+ P ++ IV VE L V+
Sbjct: 187 GRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVI 246
Query: 278 SPQ 280
SP+
Sbjct: 247 SPK 249
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 355 QNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENV----------FDGQIREGQLIVVP 404
+ A+ PH+N A ++ G +++V + + + EG +IV+P
Sbjct: 50 EGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIP 109
Query: 405 QGFAV-VKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRL 463
F V +K AS+ + I + + + +VIR +P V +F S +E + L
Sbjct: 110 SSFPVALKAASDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEEL 169
Query: 464 KYNRQELTVFTPGPR 478
N++E PR
Sbjct: 170 LENQKESYFVDGQPR 184
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 355 QNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENV----------FDGQIREGQLIVVP 404
+ A+ PH+N A ++ G +++V + + + EG +IV+P
Sbjct: 290 EGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIP 349
Query: 405 QGFAV-VKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRL 463
F V +K AS+ + I + + + +VIR +P V +F S +E + L
Sbjct: 350 SSFPVALKAASDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEEL 409
Query: 464 KYNRQELTVFTPGPR 478
N++E PR
Sbjct: 410 LENQKESYFVDGQPR 424
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 326 RGGRVTTVNRFNLPILRYIQ---LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQI 382
GG+V + N + + I ++ E G AM HW+ N H Y G RM +
Sbjct: 239 EGGKVYIADSTNFKVSKTIASALVTVEPG-----AMRELHWHPNTHEWQYYISGKARMTV 293
Query: 383 VAENGE-NVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423
A +G F+ Q G + VP FA+ N G E + F
Sbjct: 294 FASDGHARTFNYQA--GDVGYVP--FAMGHYVENIGDEPLVF 331
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 326 RGGRVTTVNRFNLPILRYIQ---LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQI 382
GG+V + N + + I ++ E G AM HW+ N H Y G RM +
Sbjct: 239 EGGKVYIADSTNFKVSKTIASALVTVEPG-----AMRELHWHPNTHEWQYYISGKARMTV 293
Query: 383 VAENGE-NVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423
A +G F+ Q G + VP FA+ N G E + F
Sbjct: 294 FASDGHARTFNYQA--GDVGYVP--FAMGHYVENIGDEPLVF 331
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 326 RGGRVTTVNRFNLPILRYIQ---LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQI 382
GG+V + N + + I ++ E G AM HW+ N H Y G RM +
Sbjct: 239 EGGKVYIADSTNFKVSKTIASALVTVEPG-----AMRELHWHPNTHEWQYYISGKARMTV 293
Query: 383 VAENGE-NVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423
A +G F+ Q G + VP FA+ N G E + F
Sbjct: 294 FASDGHARTFNYQA--GDVGYVP--FAMGHYVENIGDEPLVF 331
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 326 RGGRVTTVNRFNLPILRYIQ---LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQI 382
GG+V + N + + I ++ E G AM HW+ N H Y G RM +
Sbjct: 239 EGGKVYIADSTNFKVSKTIASALVTVEPG-----AMRELHWHPNTHEWQYYISGKARMTV 293
Query: 383 VAENGE-NVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423
A +G F+ Q G + VP FA+ N G E + F
Sbjct: 294 FASDGHARTFNYQA--GDVGYVP--FAMGHYVENIGDEPLVF 331
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 326 RGGRVTTVNRFNLPILRYIQ---LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQI 382
GG+V + N + + I ++ E G AM HW+ N H Y G RM +
Sbjct: 237 EGGKVYIADSTNFKVSKTIASALVTVEPG-----AMRELHWHPNTHEWQYYISGKARMTV 291
Query: 383 VAENGE-NVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423
A +G F+ Q G + VP FA+ N G E + F
Sbjct: 292 FASDGHARTFNYQA--GDVGYVP--FAMGHYVENIGDEPLVF 329
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 326 RGGRVTTVNRFNLPILRYIQ---LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQI 382
GG+V + N + + I ++ E G AM HW+ N H Y G RM +
Sbjct: 239 EGGKVYIADSTNFKVSKTIASALVTVEPG-----AMRELHWHPNTHEWQYYISGKARMTV 293
Query: 383 VAENGE-NVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423
A +G F+ Q G + VP FA+ N G E + F
Sbjct: 294 FASDGHARTFNYQA--GDVGYVP--FAMGHYVENIGDEPLVF 331
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 326 RGGRVTTVNRFNLPILRYIQ---LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQI 382
GG+V + N + + I ++ E G AM HW+ N H Y G RM +
Sbjct: 234 EGGKVYIADSTNFKVSKTIASALVTVEPG-----AMRELHWHPNTHEWQYYISGKARMTV 288
Query: 383 VAENGE-NVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423
A +G F+ Q G + VP FA+ N G E + F
Sbjct: 289 FASDGHARTFNYQA--GDVGYVP--FAMGHYVENIGDEPLVF 326
>pdb|3HR5|H Chain H, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|B Chain B, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|I Chain I, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|J Chain J, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
Length = 226
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 406 GFAVVKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKY 465
G A V++A +GLEW++F +D+A T A D + F +SRD ++ Y
Sbjct: 33 GIAWVRQAPGKGLEWVAF-ISDLAYTIYYA-----------DTVTGRFTISRDNSKNTLY 80
>pdb|1DGR|Y Chain Y, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|W Chain W, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|M Chain M, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|Y Chain Y, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 93
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 391 FDGQIREGQLIVVPQGFAV-VKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVI 449
+ + EG +IV+P F V +K AS+ + I + + + +VIR +P V
Sbjct: 6 YAATLSEGDIIVIPSSFPVALKAASDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVS 65
Query: 450 QNSFQVSRDEAQRLKYNRQE 469
+F S +E + L N++E
Sbjct: 66 DLTFPGSGEEVEELLENQKE 85
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 114/258 (44%), Gaps = 44/258 (17%)
Query: 235 FRGFDERLLAEAFN-----VNPDLISKLQRPQMQKGIIVRV-EEELRVLSPQRGRXXXXX 288
+GF +L +F+ +N L+ + + + Q+G+IV + +E++R LS +R +
Sbjct: 150 LQGFSHNILETSFHSEFEEINRVLLGEEEEQRQQEGVIVELSKEQIRQLS-RRAKSSS-- 206
Query: 289 XXXXXXGSGDNGIEETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFNLPILRYIQLSA 348
+TI + N+ S Y+ G+ + P LR + +
Sbjct: 207 -------------RKTISSEDEPFNLR--SRNPIYSNNFGKFFEITPEKNPQLRDLDIFL 251
Query: 349 EKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENV-------------FDGQI 395
++ + A++ PH+N A ++ I G+ +++V + + ++
Sbjct: 252 SSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAEL 311
Query: 396 REGQLIVVPQGFAVVKRASNRGLEWISFKTNDVAKTSQ---LAG-RASVIRGLPLDVIQN 451
E + V+P + V A++ L +++F N A+ +Q LAG + +V+R + V +
Sbjct: 312 SEDDVFVIPAAYPFVVNATS-NLNFLAFGIN--AENNQRNFLAGEKDNVVRQIERQVQEL 368
Query: 452 SFQVSRDEAQRLKYNRQE 469
+F S + +RL ++E
Sbjct: 369 AFPGSAQDVERLLKKQRE 386
>pdb|3S7E|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7E|B Chain B, Crystal Structure Of Ara H 1
pdb|3S7I|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7I|B Chain B, Crystal Structure Of Ara H 1
Length = 418
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 353 LYQNAMMAPHWNLNAHSVVYITRGNGRMQIVA 384
+ + A+M PH+N A +V + +G G +++VA
Sbjct: 270 IKEGALMLPHFNSKAMVIVVVNKGTGNLELVA 301
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
Query: 323 YNPRGGRVTTVNRF--------NLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYIT 374
Y + GR+ + RF NL R +Q+ A+ N ++ P + +A +++ I
Sbjct: 18 YGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKP-----NTLVLPK-HADADNILVIQ 71
Query: 375 RGNGRMQIVAENGENVFDGQIREGQLIVVPQGFA--VVKRASNRGLE--WISFKTNDVAK 430
+G + + NG N + EG + +P GF ++ R N+ L IS N +
Sbjct: 72 QGQATVTVA--NGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQ 129
Query: 431 TSQL-----AGRASVIRGLPLDVIQNSFQVSRDEAQRL 463
++S ++G + ++ +F +E +R+
Sbjct: 130 FEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRV 167
>pdb|3NH7|H Chain H, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
pdb|3NH7|I Chain I, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
pdb|3NH7|J Chain J, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
pdb|3NH7|K Chain K, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
Length = 234
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 410 VKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKY 465
V++A +GLEW+S+ + + L G A D ++ F +SRD ++ Y
Sbjct: 37 VRQAPGKGLEWVSY----TSSSGSLTGYA--------DSVKGRFTISRDNSKNTLY 80
>pdb|2UZI|H Chain H, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
Length = 114
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 12/56 (21%)
Query: 410 VKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKY 465
V++A +GLEW+S+ +++TS+ A ++G F +SRD ++ Y
Sbjct: 37 VRQAPGKGLEWVSY----ISRTSKTIYYADSVKG--------RFTISRDNSKNTLY 80
>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|B Chain B, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|C Chain C, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|D Chain D, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|E Chain E, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|F Chain F, Crystal Structure Of Major Peanut Allergen Ara H 1
Length = 418
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 339 PILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVA 384
P L+ + + + + A++ PH+N A +V + +G G +++VA
Sbjct: 255 PQLQDLDMMLTXVEIKEGALVLPHFNSKAMVIVVVNKGTGNLELVA 300
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
Query: 323 YNPRGGRVTTVNRF--------NLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYIT 374
Y + GR+ + RF NL R +Q+ A+ N ++ P + +A +++ I
Sbjct: 17 YGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKP-----NTLVLPK-HADADNILVIQ 70
Query: 375 RGNGRMQIVAENGENVFDGQIREGQLIVVPQGFA--VVKRASNRGLE--WISFKTNDVAK 430
+G + + NG N + EG + +P GF ++ R N+ L IS N +
Sbjct: 71 QGQATVTVA--NGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQ 128
Query: 431 TSQL-----AGRASVIRGLPLDVIQNSFQVSRDEAQRL 463
++S ++G + ++ +F +E +R+
Sbjct: 129 FEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRV 166
>pdb|2VH5|H Chain H, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
Length = 114
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 12/56 (21%)
Query: 410 VKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKY 465
V++A +GLEW+S+ +++TS+ A ++G F +SRD ++ Y
Sbjct: 37 VRQAPGKGLEWVSY----ISRTSKTIYYADSVKG--------RFTISRDNSKNTLY 80
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 145 KVRQIREGDLVALPTGSANWIYNDGPSELVVV 176
K R IR+GD L G+ WI N G +E VVV
Sbjct: 137 KTRAIRQGDHYVL-NGTKMWISNGGEAEWVVV 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,042,175
Number of Sequences: 62578
Number of extensions: 453236
Number of successful extensions: 1219
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 51
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)