Query 048197
Match_columns 480
No_of_seqs 304 out of 1726
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:19:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00212 glutelin; Provisional 100.0 2E-123 5E-128 982.2 43.5 460 1-476 1-479 (493)
2 TIGR03404 bicupin_oxalic bicup 100.0 7.4E-45 1.6E-49 376.3 32.7 314 61-467 48-363 (367)
3 PF00190 Cupin_1: Cupin; Inte 99.9 4.9E-27 1.1E-31 213.3 15.3 123 50-186 1-125 (144)
4 PF00190 Cupin_1: Cupin; Inte 99.9 4.7E-25 1E-29 200.3 13.3 133 313-460 2-143 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 5.3E-22 1.1E-26 180.7 16.9 139 322-460 6-145 (146)
6 smart00835 Cupin_1 Cupin. This 99.9 1.3E-21 2.8E-26 178.2 16.6 142 54-254 2-145 (146)
7 TIGR03404 bicupin_oxalic bicup 99.9 3E-21 6.5E-26 200.5 15.3 139 326-473 49-190 (367)
8 PLN00212 glutelin; Provisional 99.8 1.3E-20 2.9E-25 200.5 16.7 150 322-473 57-257 (493)
9 COG2140 Thermophilic glucose-6 99.8 3.9E-18 8.5E-23 161.8 11.8 193 239-464 2-197 (209)
10 TIGR03214 ura-cupin putative a 99.4 1.2E-10 2.7E-15 116.1 23.7 75 345-426 178-254 (260)
11 PRK11171 hypothetical protein; 99.3 5.5E-10 1.2E-14 111.8 24.1 197 78-426 58-259 (266)
12 COG2140 Thermophilic glucose-6 99.2 1.7E-10 3.7E-15 110.0 11.4 104 49-181 56-162 (209)
13 COG0662 {ManC} Mannose-6-phosp 99.0 1.8E-09 3.9E-14 96.3 11.6 80 78-183 33-113 (127)
14 TIGR02272 gentisate_1_2 gentis 99.0 4.4E-09 9.5E-14 108.1 13.6 78 80-182 80-157 (335)
15 PF07883 Cupin_2: Cupin domain 99.0 3.5E-09 7.6E-14 83.5 8.7 69 85-179 2-71 (71)
16 COG1917 Uncharacterized conser 98.9 1.2E-08 2.6E-13 91.0 12.0 78 78-181 40-118 (131)
17 PRK13290 ectC L-ectoine syntha 98.9 3.6E-08 7.8E-13 88.0 12.9 94 59-181 16-109 (125)
18 PRK04190 glucose-6-phosphate i 98.9 4E-08 8.7E-13 93.8 13.7 87 75-182 62-157 (191)
19 PRK04190 glucose-6-phosphate i 98.8 3.7E-08 8.1E-13 94.0 12.6 88 339-427 61-157 (191)
20 PF07883 Cupin_2: Cupin domain 98.7 3.6E-08 7.7E-13 77.7 7.8 69 350-424 2-71 (71)
21 TIGR03214 ura-cupin putative a 98.7 8E-08 1.7E-12 96.0 12.2 78 80-183 178-256 (260)
22 COG3837 Uncharacterized conser 98.7 7.6E-08 1.6E-12 87.8 9.0 78 81-184 42-123 (161)
23 COG3435 Gentisate 1,2-dioxygen 98.5 9.1E-07 2E-11 88.4 12.4 259 57-430 63-336 (351)
24 PRK13290 ectC L-ectoine syntha 98.5 8.3E-07 1.8E-11 79.3 10.8 78 344-427 33-110 (125)
25 COG0662 {ManC} Mannose-6-phosp 98.5 9.2E-07 2E-11 78.9 10.5 79 345-429 35-114 (127)
26 PRK11171 hypothetical protein; 98.4 2E-06 4.3E-11 86.3 12.7 78 80-183 183-261 (266)
27 PRK15460 cpsB mannose-1-phosph 98.4 2.1E-06 4.4E-11 92.8 12.3 75 79-179 383-458 (478)
28 PF01050 MannoseP_isomer: Mann 98.4 3.3E-06 7.1E-11 77.8 11.8 88 59-178 47-135 (151)
29 COG4297 Uncharacterized protei 98.4 7.1E-07 1.5E-11 79.6 6.4 61 361-424 58-118 (163)
30 COG1917 Uncharacterized conser 98.3 3.4E-06 7.4E-11 75.1 10.1 79 342-426 39-118 (131)
31 TIGR01479 GMP_PMI mannose-1-ph 98.3 3.7E-06 8E-11 90.7 10.8 76 78-179 373-449 (468)
32 PF01050 MannoseP_isomer: Mann 98.2 1.5E-05 3.3E-10 73.5 11.9 89 326-427 50-139 (151)
33 PRK09943 DNA-binding transcrip 98.2 1E-05 2.2E-10 76.6 10.7 74 80-179 106-180 (185)
34 PF06560 GPI: Glucose-6-phosph 98.1 3E-05 6.4E-10 73.5 11.1 88 340-427 44-147 (182)
35 TIGR01479 GMP_PMI mannose-1-ph 98.0 3.2E-05 7E-10 83.5 11.2 89 326-427 363-452 (468)
36 COG4101 Predicted mannose-6-ph 98.0 3.8E-05 8.2E-10 67.2 8.7 98 59-179 24-122 (142)
37 COG3837 Uncharacterized conser 98.0 3E-05 6.5E-10 71.1 8.1 82 340-429 38-123 (161)
38 PF06560 GPI: Glucose-6-phosph 98.0 3.8E-05 8.2E-10 72.8 9.1 93 74-183 43-148 (182)
39 PF11699 CENP-C_C: Mif2/CENP-C 97.9 0.0001 2.2E-09 61.5 9.5 72 80-177 11-83 (85)
40 PRK09943 DNA-binding transcrip 97.8 0.00016 3.4E-09 68.4 10.9 74 345-425 106-181 (185)
41 COG4101 Predicted mannose-6-ph 97.8 0.00012 2.6E-09 64.2 8.6 83 345-430 45-128 (142)
42 PRK15460 cpsB mannose-1-phosph 97.8 0.00011 2.4E-09 79.5 10.1 77 345-427 384-461 (478)
43 PF02041 Auxin_BP: Auxin bindi 97.7 0.00027 5.9E-09 64.3 10.2 84 80-180 43-127 (167)
44 PF03079 ARD: ARD/ARD' family; 97.7 0.00021 4.5E-09 66.3 8.9 65 93-179 84-149 (157)
45 TIGR03037 anthran_nbaC 3-hydro 97.7 0.00011 2.4E-09 68.0 6.9 51 361-413 41-92 (159)
46 PF06339 Ectoine_synth: Ectoin 97.6 0.0008 1.7E-08 59.7 11.7 96 57-181 14-109 (126)
47 PRK13264 3-hydroxyanthranilate 97.6 0.00014 3.1E-09 68.3 7.1 61 89-171 42-102 (177)
48 COG1791 Uncharacterized conser 97.6 0.00037 7.9E-09 64.8 9.1 65 94-179 88-152 (181)
49 PRK13264 3-hydroxyanthranilate 97.6 0.00021 4.6E-09 67.2 7.2 57 354-413 42-98 (177)
50 PF03079 ARD: ARD/ARD' family; 97.5 0.00041 8.9E-09 64.4 9.0 69 356-426 82-151 (157)
51 PF02311 AraC_binding: AraC-li 97.5 0.00037 7.9E-09 60.3 7.8 64 90-179 12-75 (136)
52 TIGR03037 anthran_nbaC 3-hydro 97.4 0.00061 1.3E-08 63.2 8.6 55 97-173 44-98 (159)
53 PRK15457 ethanolamine utilizat 97.4 0.00082 1.8E-08 65.6 9.2 69 345-424 156-225 (233)
54 PF02311 AraC_binding: AraC-li 97.3 0.001 2.2E-08 57.4 8.3 63 355-424 12-75 (136)
55 PF05523 FdtA: WxcM-like, C-te 97.3 0.0031 6.6E-08 56.8 11.5 97 325-425 13-111 (131)
56 COG4297 Uncharacterized protei 97.3 0.00061 1.3E-08 61.2 6.6 48 94-164 56-104 (163)
57 PRK15457 ethanolamine utilizat 97.3 0.0021 4.5E-08 62.8 10.6 70 79-179 155-225 (233)
58 TIGR02451 anti_sig_ChrR anti-s 97.0 0.0024 5.2E-08 62.2 8.3 72 80-181 126-197 (215)
59 PF11699 CENP-C_C: Mif2/CENP-C 97.0 0.0027 5.9E-08 53.0 7.1 70 345-420 11-81 (85)
60 PF12973 Cupin_7: ChrR Cupin-l 97.0 0.0028 6.2E-08 53.0 7.3 58 80-167 23-80 (91)
61 PF02041 Auxin_BP: Auxin bindi 96.8 0.013 2.9E-07 53.5 10.2 120 310-435 11-136 (167)
62 PF05899 Cupin_3: Protein of u 96.7 0.0028 6E-08 51.3 5.2 57 346-410 7-63 (74)
63 PRK13501 transcriptional activ 96.7 0.0044 9.5E-08 62.3 7.8 58 89-172 26-83 (290)
64 PRK10371 DNA-binding transcrip 96.7 0.0049 1.1E-07 62.8 8.1 61 86-172 31-91 (302)
65 PF12973 Cupin_7: ChrR Cupin-l 96.7 0.0051 1.1E-07 51.5 6.7 64 345-420 23-86 (91)
66 COG1791 Uncharacterized conser 96.7 0.011 2.4E-07 55.2 9.0 65 360-426 89-154 (181)
67 PRK13500 transcriptional activ 96.7 0.0065 1.4E-07 62.0 8.4 58 90-173 57-114 (312)
68 PF06339 Ectoine_synth: Ectoin 96.6 0.015 3.2E-07 51.8 9.1 78 343-426 32-109 (126)
69 TIGR02272 gentisate_1_2 gentis 96.6 0.0078 1.7E-07 62.4 8.6 74 345-424 80-154 (335)
70 PRK10296 DNA-binding transcrip 96.5 0.0062 1.3E-07 60.7 7.3 48 358-412 35-82 (278)
71 PF05899 Cupin_3: Protein of u 96.5 0.012 2.6E-07 47.6 7.5 58 81-165 7-64 (74)
72 PRK10296 DNA-binding transcrip 96.5 0.0087 1.9E-07 59.6 8.1 50 93-168 35-84 (278)
73 PRK13503 transcriptional activ 96.5 0.0058 1.3E-07 60.6 6.8 56 89-170 23-78 (278)
74 PRK13501 transcriptional activ 96.4 0.0095 2.1E-07 59.8 7.5 49 358-413 30-78 (290)
75 PRK10371 DNA-binding transcrip 96.3 0.0092 2E-07 60.8 7.2 56 351-413 31-86 (302)
76 PRK13500 transcriptional activ 96.3 0.011 2.5E-07 60.2 7.7 55 354-415 56-110 (312)
77 PF06249 EutQ: Ethanolamine ut 96.3 0.018 3.9E-07 53.2 7.9 69 345-423 76-144 (152)
78 PRK13502 transcriptional activ 96.2 0.019 4E-07 57.3 8.3 56 353-415 25-80 (282)
79 PF06052 3-HAO: 3-hydroxyanthr 96.1 0.011 2.4E-07 54.2 5.7 51 98-170 50-100 (151)
80 TIGR02297 HpaA 4-hydroxyphenyl 96.1 0.015 3.3E-07 57.9 7.0 53 355-413 32-84 (287)
81 TIGR02297 HpaA 4-hydroxyphenyl 96.0 0.015 3.2E-07 58.0 6.8 63 89-177 31-94 (287)
82 PF00908 dTDP_sugar_isom: dTDP 96.0 0.039 8.4E-07 52.3 9.0 72 354-426 51-133 (176)
83 TIGR01221 rmlC dTDP-4-dehydror 96.0 0.077 1.7E-06 50.3 10.9 73 354-426 52-133 (176)
84 PRK13502 transcriptional activ 96.0 0.025 5.4E-07 56.4 8.0 56 89-170 26-81 (282)
85 TIGR02451 anti_sig_ChrR anti-s 95.9 0.027 5.9E-07 54.9 7.9 69 346-425 127-196 (215)
86 PRK15131 mannose-6-phosphate i 95.9 0.19 4.1E-06 53.4 14.5 44 366-415 338-381 (389)
87 COG1898 RfbC dTDP-4-dehydrorha 95.7 0.12 2.6E-06 48.8 11.0 77 345-425 48-132 (173)
88 COG3435 Gentisate 1,2-dioxygen 95.7 0.018 3.9E-07 58.2 5.7 105 47-181 229-334 (351)
89 PF14499 DUF4437: Domain of un 95.7 0.031 6.6E-07 55.8 7.3 73 79-176 34-106 (251)
90 PF06052 3-HAO: 3-hydroxyanthr 95.7 0.022 4.9E-07 52.1 5.7 48 362-411 47-95 (151)
91 PF06249 EutQ: Ethanolamine ut 95.6 0.053 1.1E-06 50.1 8.0 73 80-182 76-148 (152)
92 KOG2107 Uncharacterized conser 95.5 0.017 3.8E-07 53.5 4.5 55 357-413 84-138 (179)
93 PF14499 DUF4437: Domain of un 95.4 0.032 6.9E-07 55.7 6.4 72 345-422 35-107 (251)
94 TIGR00218 manA mannose-6-phosp 95.4 0.25 5.4E-06 50.5 13.2 45 365-415 251-295 (302)
95 PF13621 Cupin_8: Cupin-like d 95.4 0.048 1E-06 52.7 7.4 69 348-417 132-236 (251)
96 PRK13503 transcriptional activ 95.3 0.036 7.8E-07 54.9 6.5 54 354-414 23-76 (278)
97 COG3450 Predicted enzyme of th 95.2 0.031 6.7E-07 49.4 4.7 46 362-412 58-104 (116)
98 PF05523 FdtA: WxcM-like, C-te 95.0 0.27 5.8E-06 44.2 10.5 97 58-180 10-111 (131)
99 PF12852 Cupin_6: Cupin 94.8 0.082 1.8E-06 49.7 7.0 47 101-171 35-81 (186)
100 COG4766 EutQ Ethanolamine util 94.4 0.23 4.9E-06 45.8 8.4 69 345-423 99-167 (176)
101 COG3450 Predicted enzyme of th 94.4 0.09 2E-06 46.5 5.6 58 80-164 44-101 (116)
102 PF00908 dTDP_sugar_isom: dTDP 94.3 0.26 5.7E-06 46.6 9.0 101 58-176 16-129 (176)
103 KOG2107 Uncharacterized conser 94.3 0.059 1.3E-06 50.1 4.4 53 92-166 84-137 (179)
104 PF13621 Cupin_8: Cupin-like d 93.5 0.48 1.1E-05 45.7 9.6 90 83-172 132-236 (251)
105 PF02373 JmjC: JmjC domain, hy 93.1 0.16 3.4E-06 43.3 4.9 26 146-171 82-107 (114)
106 TIGR01221 rmlC dTDP-4-dehydror 93.1 1.1 2.4E-05 42.4 11.0 111 49-179 9-131 (176)
107 PF08007 Cupin_4: Cupin superf 92.9 0.36 7.8E-06 49.7 8.0 77 347-424 114-210 (319)
108 COG4766 EutQ Ethanolamine util 92.9 0.61 1.3E-05 43.0 8.4 69 80-178 99-167 (176)
109 COG3257 GlxB Uncharacterized p 91.4 1.2 2.6E-05 43.4 9.0 86 327-425 167-256 (264)
110 PF13759 2OG-FeII_Oxy_5: Putat 91.1 0.83 1.8E-05 38.8 6.9 73 351-423 5-100 (101)
111 PF05118 Asp_Arg_Hydrox: Aspar 90.8 1.5 3.2E-05 40.9 8.9 77 82-181 81-159 (163)
112 KOG3706 Uncharacterized conser 90.7 0.13 2.8E-06 55.0 1.8 87 326-413 286-403 (629)
113 PF05726 Pirin_C: Pirin C-term 90.3 1.9 4.1E-05 36.9 8.4 68 349-424 2-69 (104)
114 COG1898 RfbC dTDP-4-dehydrorha 89.7 2 4.2E-05 40.7 8.7 78 90-183 54-136 (173)
115 COG3257 GlxB Uncharacterized p 89.5 2.4 5.2E-05 41.5 9.1 87 67-183 171-259 (264)
116 PF12852 Cupin_6: Cupin 89.4 1.1 2.5E-05 41.9 7.0 42 368-413 36-77 (186)
117 PRK05341 homogentisate 1,2-dio 89.4 2.1 4.6E-05 45.9 9.6 46 354-409 326-372 (438)
118 KOG2757 Mannose-6-phosphate is 88.8 1.6 3.4E-05 45.7 7.8 70 346-421 333-402 (411)
119 PF04209 HgmA: homogentisate 1 88.5 1 2.2E-05 48.2 6.5 51 100-176 145-195 (424)
120 PF08007 Cupin_4: Cupin superf 88.5 2.9 6.2E-05 43.1 9.7 81 85-169 117-200 (319)
121 PF04209 HgmA: homogentisate 1 88.3 2.1 4.5E-05 45.9 8.6 80 336-424 116-196 (424)
122 PRK10572 DNA-binding transcrip 88.2 1.6 3.4E-05 43.7 7.4 49 96-170 44-92 (290)
123 TIGR01015 hmgA homogentisate 1 87.7 3 6.5E-05 44.7 9.3 70 79-176 125-197 (429)
124 PRK15131 mannose-6-phosphate i 87.6 3.4 7.4E-05 44.0 9.8 65 80-173 320-384 (389)
125 TIGR02466 conserved hypothetic 87.0 1.7 3.7E-05 42.0 6.6 75 350-424 100-197 (201)
126 PRK12335 tellurite resistance 86.0 2.5 5.4E-05 42.7 7.5 71 355-425 20-93 (287)
127 KOG2757 Mannose-6-phosphate is 85.9 4.2 9.2E-05 42.6 9.0 82 62-174 319-400 (411)
128 PLN02658 homogentisate 1,2-dio 84.5 3.6 7.8E-05 44.1 8.0 46 354-409 320-366 (435)
129 PRK05341 homogentisate 1,2-dio 83.5 7.2 0.00016 41.9 9.8 72 345-423 132-204 (438)
130 PF13464 DUF4115: Domain of un 83.3 7 0.00015 31.5 7.6 52 372-423 3-54 (77)
131 PF05726 Pirin_C: Pirin C-term 83.1 3 6.6E-05 35.7 5.7 57 84-168 2-59 (104)
132 PF06172 Cupin_5: Cupin superf 80.9 24 0.00053 32.1 11.0 100 325-425 14-126 (139)
133 COG2850 Uncharacterized conser 80.6 2.1 4.6E-05 44.8 4.4 70 352-424 125-213 (383)
134 PF09313 DUF1971: Domain of un 80.1 15 0.00032 30.6 8.4 62 355-420 12-79 (82)
135 PRK09391 fixK transcriptional 79.9 11 0.00023 36.6 9.0 65 78-162 33-97 (230)
136 PLN02658 homogentisate 1,2-dio 79.7 10 0.00023 40.7 9.3 76 339-422 120-196 (435)
137 TIGR00218 manA mannose-6-phosp 77.5 13 0.00029 37.9 9.2 67 78-173 232-298 (302)
138 PRK10572 DNA-binding transcrip 77.5 6.9 0.00015 39.0 7.0 43 365-413 47-89 (290)
139 PRK14584 hmsS hemin storage sy 77.2 3.3 7E-05 38.4 4.1 44 236-279 97-146 (153)
140 TIGR01015 hmgA homogentisate 1 75.5 9.5 0.00021 41.0 7.6 61 345-412 126-187 (429)
141 PLN02288 mannose-6-phosphate i 74.9 7.7 0.00017 41.4 6.8 60 80-163 333-392 (394)
142 PRK13918 CRP/FNR family transc 72.9 11 0.00023 35.3 6.6 54 351-404 9-63 (202)
143 PF13759 2OG-FeII_Oxy_5: Putat 72.7 17 0.00036 30.7 7.2 89 86-177 5-99 (101)
144 PRK09391 fixK transcriptional 71.4 22 0.00047 34.4 8.6 82 341-424 31-114 (230)
145 PF06865 DUF1255: Protein of u 71.3 37 0.00081 29.0 8.7 71 346-424 23-93 (94)
146 PRK10579 hypothetical protein; 71.0 37 0.0008 29.0 8.6 69 347-423 24-92 (94)
147 PF00027 cNMP_binding: Cyclic 70.9 13 0.00028 29.2 5.8 51 86-156 2-52 (91)
148 PF05995 CDO_I: Cysteine dioxy 70.4 57 0.0012 30.7 10.9 79 346-424 75-162 (175)
149 COG3542 Uncharacterized conser 68.9 88 0.0019 29.1 11.1 93 347-443 45-148 (162)
150 PF00027 cNMP_binding: Cyclic 68.6 13 0.00028 29.2 5.4 35 367-401 17-51 (91)
151 PF14525 AraC_binding_2: AraC- 68.1 40 0.00087 30.0 9.1 32 146-177 74-105 (172)
152 PLN02288 mannose-6-phosphate i 68.1 12 0.00025 40.1 6.3 59 345-408 333-391 (394)
153 PRK13918 CRP/FNR family transc 66.0 33 0.00072 31.9 8.4 54 85-158 8-63 (202)
154 COG3508 HmgA Homogentisate 1,2 65.7 46 0.00099 35.1 9.7 63 79-168 123-187 (427)
155 PRK11753 DNA-binding transcrip 65.0 42 0.00091 31.4 9.0 56 83-158 20-75 (211)
156 KOG3706 Uncharacterized conser 64.8 5.7 0.00012 43.1 3.1 76 86-165 321-401 (629)
157 cd00038 CAP_ED effector domain 63.1 23 0.00049 28.5 6.0 55 84-158 18-72 (115)
158 PRK09685 DNA-binding transcrip 62.2 50 0.0011 33.0 9.4 71 80-176 44-120 (302)
159 PRK10579 hypothetical protein; 62.2 70 0.0015 27.4 8.6 46 99-168 39-84 (94)
160 COG3508 HmgA Homogentisate 1,2 62.0 27 0.00059 36.7 7.3 66 339-411 118-184 (427)
161 cd00038 CAP_ED effector domain 61.8 23 0.0005 28.5 5.8 55 349-404 18-72 (115)
162 KOG3995 3-hydroxyanthranilate 61.4 8.5 0.00018 37.5 3.4 46 100-167 52-97 (279)
163 PF06865 DUF1255: Protein of u 61.1 86 0.0019 26.8 9.0 53 99-177 39-91 (94)
164 PF02678 Pirin: Pirin; InterP 60.6 49 0.0011 28.8 7.7 63 90-178 39-105 (107)
165 PRK09685 DNA-binding transcrip 60.5 37 0.0008 33.9 8.1 47 361-413 65-111 (302)
166 PF02678 Pirin: Pirin; InterP 60.0 29 0.00062 30.2 6.2 61 356-421 39-103 (107)
167 COG1741 Pirin-related protein 59.3 23 0.0005 36.0 6.3 59 350-413 48-108 (276)
168 PRK10402 DNA-binding transcrip 57.7 51 0.0011 31.7 8.2 54 85-158 33-86 (226)
169 PRK10402 DNA-binding transcrip 57.7 19 0.00041 34.7 5.2 58 366-424 48-110 (226)
170 COG2850 Uncharacterized conser 57.2 22 0.00048 37.5 5.8 79 87-178 125-212 (383)
171 PRK11753 DNA-binding transcrip 57.0 33 0.00072 32.1 6.7 74 349-424 21-100 (211)
172 smart00100 cNMP Cyclic nucleot 56.8 25 0.00055 28.3 5.2 39 366-404 34-72 (120)
173 PF08220 HTH_DeoR: DeoR-like h 56.5 10 0.00022 28.9 2.5 41 237-277 14-54 (57)
174 PF04962 KduI: KduI/IolB famil 56.2 78 0.0017 31.9 9.4 86 328-425 12-107 (261)
175 COG1482 ManA Phosphomannose is 54.9 9.7 0.00021 39.3 2.8 42 367-414 260-301 (312)
176 KOG3995 3-hydroxyanthranilate 53.7 14 0.0003 36.1 3.4 47 362-410 47-94 (279)
177 TIGR03697 NtcA_cyano global ni 53.4 24 0.00052 32.5 5.0 37 367-403 11-47 (193)
178 smart00100 cNMP Cyclic nucleot 52.6 57 0.0012 26.2 6.7 54 85-158 19-72 (120)
179 COG1482 ManA Phosphomannose is 52.5 19 0.0004 37.3 4.3 39 380-421 149-187 (312)
180 PF11142 DUF2917: Protein of u 51.3 43 0.00093 26.3 5.3 56 352-413 3-58 (63)
181 PF06172 Cupin_5: Cupin superf 51.1 1.9E+02 0.0042 26.3 11.3 99 61-178 14-124 (139)
182 COG3718 IolB Uncharacterized e 50.1 1.6E+02 0.0035 29.4 10.1 95 60-172 10-104 (270)
183 PF11142 DUF2917: Protein of u 47.6 93 0.002 24.3 6.7 56 87-167 3-58 (63)
184 PF07385 DUF1498: Protein of u 44.5 1.3E+02 0.0028 29.8 8.5 97 85-185 91-192 (225)
185 PRK14585 pgaD putative PGA bio 43.1 20 0.00043 32.7 2.5 26 236-261 88-113 (137)
186 PF07172 GRP: Glycine rich pro 42.5 19 0.00041 30.7 2.2 13 1-13 1-13 (95)
187 PF13994 PgaD: PgaD-like prote 41.0 21 0.00046 32.3 2.4 24 238-261 101-124 (138)
188 PRK11161 fumarate/nitrate redu 40.7 51 0.0011 31.6 5.2 51 352-403 41-91 (235)
189 PF02373 JmjC: JmjC domain, hy 40.6 51 0.0011 27.6 4.7 25 389-413 79-103 (114)
190 COG0664 Crp cAMP-binding prote 38.5 83 0.0018 28.7 6.2 60 81-160 21-80 (214)
191 PF04962 KduI: KduI/IolB famil 38.4 1.5E+02 0.0032 29.9 8.2 77 80-174 26-103 (261)
192 TIGR02466 conserved hypothetic 37.5 1E+02 0.0022 29.8 6.7 89 86-177 101-195 (201)
193 PF03971 IDH: Monomeric isocit 37.5 34 0.00073 38.3 3.6 37 367-403 418-454 (735)
194 PRK11161 fumarate/nitrate redu 37.3 1.6E+02 0.0035 28.1 8.1 53 86-158 40-92 (235)
195 COG0664 Crp cAMP-binding prote 36.9 58 0.0013 29.8 4.8 58 366-424 40-102 (214)
196 COG3542 Uncharacterized conser 36.8 3.6E+02 0.0077 25.2 10.2 109 61-198 19-140 (162)
197 PF05118 Asp_Arg_Hydrox: Aspar 36.4 1.5E+02 0.0032 27.5 7.3 69 346-418 80-152 (163)
198 PF05995 CDO_I: Cysteine dioxy 36.0 3.7E+02 0.008 25.1 11.0 87 80-179 74-162 (175)
199 PRK09392 ftrB transcriptional 36.0 72 0.0016 30.6 5.5 53 84-157 31-83 (236)
200 PF07847 DUF1637: Protein of u 35.8 27 0.00059 33.8 2.4 86 341-426 39-143 (200)
201 PTZ00459 mucin-associated surf 35.6 21 0.00046 36.5 1.7 14 1-14 1-18 (291)
202 TIGR03697 NtcA_cyano global ni 35.2 67 0.0014 29.5 4.9 38 100-157 10-47 (193)
203 COG3718 IolB Uncharacterized e 35.0 3.8E+02 0.0083 26.9 10.0 84 325-414 11-100 (270)
204 PF14525 AraC_binding_2: AraC- 34.8 2.5E+02 0.0054 24.8 8.5 51 367-424 55-105 (172)
205 PF07385 DUF1498: Protein of u 34.1 3.8E+02 0.0083 26.5 9.9 72 349-421 90-183 (225)
206 PLN02868 acyl-CoA thioesterase 30.9 1.4E+02 0.0031 31.7 7.1 52 85-157 33-84 (413)
207 COG1741 Pirin-related protein 30.5 1.5E+02 0.0032 30.2 6.8 69 85-178 48-121 (276)
208 PF02796 HTH_7: Helix-turn-hel 29.7 54 0.0012 23.6 2.6 25 236-260 20-44 (45)
209 TIGR00178 monomer_idh isocitra 29.3 43 0.00093 37.6 2.8 37 367-403 422-458 (741)
210 smart00420 HTH_DEOR helix_turn 28.7 52 0.0011 23.2 2.4 37 237-273 14-50 (53)
211 PF10313 DUF2415: Uncharacteri 28.4 63 0.0014 23.6 2.7 31 356-386 1-33 (43)
212 PRK04043 tolB translocation pr 28.3 2.8E+02 0.006 29.7 8.8 49 352-400 363-414 (419)
213 PF09313 DUF1971: Domain of un 28.1 3.5E+02 0.0075 22.4 8.6 62 90-170 12-75 (82)
214 PLN02868 acyl-CoA thioesterase 27.5 1E+02 0.0022 32.8 5.3 38 366-404 48-85 (413)
215 COG0853 PanD Aspartate 1-decar 26.6 41 0.00089 30.1 1.7 37 367-405 52-88 (126)
216 PHA02951 Hypothetical protein; 26.0 75 0.0016 32.8 3.6 56 103-179 126-183 (337)
217 PRK00022 lolB outer membrane l 25.8 1.3E+02 0.0029 28.6 5.3 15 6-21 5-19 (202)
218 PF04773 FecR: FecR protein; 25.4 3.6E+02 0.0078 21.7 8.6 58 85-165 20-79 (98)
219 PF15144 DUF4576: Domain of un 25.1 53 0.0011 27.1 2.0 24 1-24 1-25 (88)
220 PF11256 DUF3055: Protein of u 24.9 2.6E+02 0.0057 23.3 6.0 30 436-465 44-76 (81)
221 PF00166 Cpn10: Chaperonin 10 24.9 2.1E+02 0.0045 24.0 5.7 65 353-423 19-84 (93)
222 KOG2968 Predicted esterase of 24.8 36 0.00079 39.9 1.3 62 339-401 499-560 (1158)
223 PRK02290 3-dehydroquinate synt 24.5 3.3E+02 0.0072 28.7 8.1 72 327-402 252-323 (344)
224 PF06586 TraK: TraK protein; 24.4 2E+02 0.0044 27.9 6.4 66 49-116 37-104 (234)
225 smart00345 HTH_GNTR helix_turn 24.4 64 0.0014 23.4 2.3 34 239-272 22-55 (60)
226 PF04773 FecR: FecR protein; 24.3 3.8E+02 0.0082 21.5 7.9 59 349-410 19-78 (98)
227 PRK05467 Fe(II)-dependent oxyg 24.1 1.7E+02 0.0036 29.0 5.6 38 385-424 137-174 (226)
228 COG3822 ABC-type sugar transpo 23.7 1.6E+02 0.0035 28.6 5.2 35 147-183 155-189 (225)
229 PHA02699 hypothetical protein; 22.4 1E+02 0.0022 32.6 3.9 56 103-179 169-226 (466)
230 PHA02951 Hypothetical protein; 22.2 2.5E+02 0.0055 29.1 6.5 53 356-411 115-167 (337)
231 PF13545 HTH_Crp_2: Crp-like h 22.2 69 0.0015 25.0 2.1 46 234-279 25-70 (76)
232 PF04943 Pox_F11: Poxvirus F11 21.7 1.1E+02 0.0023 32.4 4.0 39 103-162 118-156 (366)
233 PRK00364 groES co-chaperonin G 21.6 3.2E+02 0.0068 23.1 6.2 60 354-417 21-81 (95)
234 PF09012 FeoC: FeoC like trans 21.0 47 0.001 26.1 0.9 36 237-272 14-49 (69)
235 COG5553 Predicted metal-depend 20.7 3.6E+02 0.0077 25.6 6.7 75 81-171 73-147 (191)
236 PF01959 DHQS: 3-dehydroquinat 20.3 4.4E+02 0.0096 27.9 8.1 72 327-402 262-333 (354)
237 PF07944 DUF1680: Putative gly 20.0 1.2E+02 0.0026 33.5 4.1 87 313-403 400-488 (520)
No 1
>PLN00212 glutelin; Provisional
Probab=100.00 E-value=2.2e-123 Score=982.23 Aligned_cols=460 Identities=45% Similarity=0.800 Sum_probs=406.8
Q ss_pred CCcc-hhHHHHHHHHHHhhhhhhhhccCCchhhHHHhhhhcccCcccccccCCCCCCcceecCCceEEEeCCCChhcccc
Q 048197 1 MAST-SLLCLGLGFLILFHACFAQIAQGTDATREQRQQQQRFQTQCNIQDLNALEPQQRVESEAGVTEFWDQNDEQLQCA 79 (480)
Q Consensus 1 m~~~-~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~C~~~~L~a~eP~~~~~se~G~~e~~~~~~~~l~~~ 79 (480)
||++ +||+|||||||||++|+|+..+.. ++++++.+++.+++|+|++|+|+||+++|+||||+||+||+++++|+|+
T Consensus 1 ~~~~~~~l~~~~~~l~l~~~~~a~~~~~~--~~~~~~~~~~~~~~C~~~~l~a~ep~~ri~se~G~~E~~~~~~~q~~ca 78 (493)
T PLN00212 1 ASSAFSRLSICFCVLLLCHGSMAQLFSQS--TNPWQSPRQGSFRECRFDRLQAFEPLRKVRSEAGVTEYFDEKNEQFQCT 78 (493)
T ss_pred CcchHHHHHHHHHHHHHHhhHhhhhcccc--cccccccccccCCcccccccccCCCchhhcccCceeeecCCCChhhccc
Confidence 7766 788899999999999999754211 1111121222478999999999999999999999999999999999999
Q ss_pred CeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhc----ccccccccccccceeEeecCCcEE
Q 048197 80 NVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQR----SSESQSRSQDQHQKVRQIREGDLV 155 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~----~~~~~~~~~d~~qk~~~l~~GDV~ 155 (480)
||++.|++|+|+||++|||++|++++||++|+|++|+|+|||||||++.+++ +++++++++|+|||+++|++||||
T Consensus 79 Gv~~~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDVi 158 (493)
T PLN00212 79 GVFVIRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVV 158 (493)
T ss_pred ceEEEEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEE
Confidence 9999999999999999999999999999999999999999999999876553 334567889999999999999999
Q ss_pred EeCCCCEEEEEcCCCCcEEEEEEeeCCCCCccccccceeeeecCCCCcCccccccccCccccCCCCCCCCCcccccCccc
Q 048197 156 ALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLQGYSQSQGSRYQGSQGGEGGDRSRRGGNLF 235 (480)
Q Consensus 156 ~iPaG~~h~~~N~G~~~l~~v~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ni~ 235 (480)
+||||++||+||+||+++++|+++|++|+.||||+.++.||||||++++++++ |++ +++..+.|||
T Consensus 159 aiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~---------~~~-----~~~~~~~nif 224 (493)
T PLN00212 159 ALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVY---------GRS-----IEQHSGQNIF 224 (493)
T ss_pred EECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccc---------ccc-----ccccccCchh
Confidence 99999999999999999999999999999999999999999999976433211 111 1111358999
Q ss_pred ccCCHHHHHhhcCCCHHHHHHhccccccceeEEEeccceeccCCcccchhhHHHh-----------h--hhcCCCCCCCc
Q 048197 236 RGFDERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEEELRVLSPQRGREQEQEQE-----------Q--EFQGSGDNGIE 302 (480)
Q Consensus 236 ~gf~~~~La~af~v~~~~~~kl~~~~~~rg~Iv~v~~~l~~~~P~~~~~~e~~~~-----------~--~~~~~~~nG~e 302 (480)
+||++++||+||||+.++++||++++|+||.||+|+++|++++|+..+++|++++ . ....+..||+|
T Consensus 225 sGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~~~l~~~~P~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ngle 304 (493)
T PLN00212 225 SGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKNGLQLLQPTLTQQQEQAQQQQQRLYQQVQYQQSQQTSGRWNGLD 304 (493)
T ss_pred hcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEECCCcccCCCchhhhhHHHHhhhhcccccchhhhccccccCCCCcc
Confidence 9999999999999999999999999999999999999999999976543221111 0 11122349999
Q ss_pred cceeccccccCCCCCCCCCcccCCCeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEE
Q 048197 303 ETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQI 382 (480)
Q Consensus 303 e~~~~~~l~~ni~~p~~~~~~~~~~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~v 382 (480)
||+|+||+++||++|+++|+|++.+|+++++|+.+||+|++++|||++++|+||||++||||||||+|+||++|+|+|+|
T Consensus 305 Et~c~~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqv 384 (493)
T PLN00212 305 ENFCTIKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQV 384 (493)
T ss_pred ccccccccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEEEecCCCcceeeccccccccCCCHHHHHHHcCCCHHHHHH
Q 048197 383 VAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQR 462 (480)
Q Consensus 383 v~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f~ts~~~~~~~LAG~~svl~~lp~eVla~af~vs~e~~~~ 462 (480)
|+++|+++|+++|++||||||||||+|++.|++++|+|++|+|++++..++|||++|+|++||.+||++||+++++++++
T Consensus 385 V~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~egfe~v~F~tna~~~~s~laG~~Sv~~alp~eVla~Af~is~eea~~ 464 (493)
T PLN00212 385 VSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREGCQYIAFKTNANAMVSHIAGKNSIFRALPVDVIANAYRISREEARR 464 (493)
T ss_pred EcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCceEEEEeecCCCccccccccHHHHHHhCCHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCe-EEeCCC
Q 048197 463 LKYNRQEL-TVFTPG 476 (480)
Q Consensus 463 l~~~q~e~-~i~~p~ 476 (480)
||.++.+. .+++|+
T Consensus 465 lk~n~~~e~~~~~p~ 479 (493)
T PLN00212 465 LKNNRGDELGAFTPR 479 (493)
T ss_pred HHhcccCceeecCCC
Confidence 99997555 455775
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=100.00 E-value=7.4e-45 Score=376.34 Aligned_cols=314 Identities=18% Similarity=0.246 Sum_probs=251.3
Q ss_pred cCCceEEEeCCCC-hhccccCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhccccccccc
Q 048197 61 SEAGVTEFWDQND-EQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRS 139 (480)
Q Consensus 61 se~G~~e~~~~~~-~~l~~~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~ 139 (480)
..+|.+...+..+ |.++ ++++.+++|.|||+..||||.+.|++||++|+++++++.++.. +|
T Consensus 48 ~~gG~~~~~~~~~lP~l~--~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~-~~-------------- 110 (367)
T TIGR03404 48 ENGGWAREVTVRDLPIST--AIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGR-NY-------------- 110 (367)
T ss_pred ccCceEEEeChhhccCcc--cccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCc-EE--------------
Confidence 3688888888765 7776 5899999999999999999999999999999999999976432 22
Q ss_pred ccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeCCCCCccccccceeeeecCCCCcCccccccccCccccCC
Q 048197 140 QDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLQGYSQSQGSRYQGS 219 (480)
Q Consensus 140 ~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~g~ 219 (480)
+..|++||+++||+|.+|+++|.+ +++.++.+++..+...+ .+|.+
T Consensus 111 ------~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~-----~~~~~---------------------- 156 (367)
T TIGR03404 111 ------IDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSED-----GTFLV---------------------- 156 (367)
T ss_pred ------EeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCc-----ceeeH----------------------
Confidence 358999999999999999999984 56778888877654321 13333
Q ss_pred CCCCCCCcccccCcccccCCHHHHHhhcCCCHHHHHHhccccccceeEEEeccceeccCCcccchhhHHHhhhhcCCCCC
Q 048197 220 QGGEGGDRSRRGGNLFRGFDERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEEELRVLSPQRGREQEQEQEQEFQGSGDN 299 (480)
Q Consensus 220 ~~~~~~~~~~~~~ni~~gf~~~~La~af~v~~~~~~kl~~~~~~rg~Iv~v~~~l~~~~P~~~~~~e~~~~~~~~~~~~n 299 (480)
.++|+.+|+++||++|+++.+++++|+..+. +|+...- .++... +. . ....
T Consensus 157 ------------~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~---~~~~~~~-----~~~~~~---~~-----~-~~~~ 207 (367)
T TIGR03404 157 ------------TDWLAHTPKDVLAKNFGVPESAFDNLPLKEL---YIFPGTV-----PGPLDQ---EA-----V-TGPA 207 (367)
T ss_pred ------------HHHHHhCCHHHHHHHhCCCHHHHHhccccCc---eEEecCC-----CCcccc---cc-----C-cCCC
Confidence 4578789999999999999999999997764 8876531 111100 00 0 0112
Q ss_pred CCccceeccccccCCCCCCCCCcccCCCeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEE
Q 048197 300 GIEETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGR 379 (480)
Q Consensus 300 G~ee~~~~~~l~~ni~~p~~~~~~~~~~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~gr 379 (480)
|.- +..+++++.+ .++ +...+|+++.+++.+||+++. +|++.++|.||+|++||||++++||.||++|+++
T Consensus 208 ~~~----~~~~~~~~~~--~~p-~~~~gG~~~~~~~~~~p~~~~--~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~ 278 (367)
T TIGR03404 208 GEV----PGPFTYHLSE--QKP-KQVPGGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHPNADEWQYFIQGQAR 278 (367)
T ss_pred CCC----CccEEEEhhh--CCc-eecCCceEEEEChhhccCcce--EEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEE
Confidence 211 1123344443 344 667899999999999999985 9999999999999999999999999999999999
Q ss_pred EEEEecCCceEEeeecCCccEEEECCCcEEEEE-cCCCCeEEEEEEecCCCcceeeccccccccCCCHHHHHHHcCCCHH
Q 048197 380 MQIVAENGENVFDGQIREGQLIVVPQGFAVVKR-ASNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRD 458 (480)
Q Consensus 380 v~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~-ag~e~l~~v~f~ts~~~~~~~LAG~~svl~~lp~eVla~af~vs~e 458 (480)
++|++++|+. ....|++||+++||+|+.|++. .|+++++|+++++++.+....| ++||..+|.+||+++|+++++
T Consensus 279 ~~v~d~~g~~-~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l---~~~l~~~p~~vl~~~~~~~~~ 354 (367)
T TIGR03404 279 MTVFAAGGNA-RTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSL---NQWLALTPPQLVAAHLNLDDE 354 (367)
T ss_pred EEEEecCCcE-EEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEH---HHHHhhCCHHHHHHHhCcCHH
Confidence 9999998763 2237999999999999999875 5789999999999888887777 699999999999999999999
Q ss_pred HHHHHHhcC
Q 048197 459 EAQRLKYNR 467 (480)
Q Consensus 459 ~~~~l~~~q 467 (480)
++++|++++
T Consensus 355 ~~~~l~~~~ 363 (367)
T TIGR03404 355 VIDSLKKEK 363 (367)
T ss_pred HHHhccccC
Confidence 999998763
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.95 E-value=4.9e-27 Score=213.30 Aligned_cols=123 Identities=40% Similarity=0.653 Sum_probs=107.1
Q ss_pred cCCCCCCcceecCCceEEEeCCCC-h-hccccCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhh
Q 048197 50 LNALEPQQRVESEAGVTEFWDQND-E-QLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQE 127 (480)
Q Consensus 50 L~a~eP~~~~~se~G~~e~~~~~~-~-~l~~~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~ 127 (480)
+|+.+|..++++++|.++.|+..+ | .+.+.++++.+++|+|||+++||||+|++|+||++|+|+++++.|+|+.
T Consensus 1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~---- 76 (144)
T PF00190_consen 1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQ---- 76 (144)
T ss_dssp EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSS----
T ss_pred CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCcc----
Confidence 578899999999999999999877 6 6788899999999999999999999999999999999999999999852
Q ss_pred hhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeCCCCCc
Q 048197 128 SQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDN 186 (480)
Q Consensus 128 ~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~~n~~n 186 (480)
.++++.++|+ +|++|||++||+|++||++|+++.+...+.+++++++.|
T Consensus 77 ---------~~~~~~~~~v-~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~ 125 (144)
T PF00190_consen 77 ---------EEFRDFSQKV-RLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN 125 (144)
T ss_dssp ---------SEEEEEEEEE-EEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG
T ss_pred ---------ccceeeecee-eeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc
Confidence 1234556777 899999999999999999999988888888888877654
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.92 E-value=4.7e-25 Score=200.29 Aligned_cols=133 Identities=27% Similarity=0.512 Sum_probs=109.6
Q ss_pred CCCCCCCCCcccCCCeEEEEEecCCCCccccc-ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCC----
Q 048197 313 NINDPSGADAYNPRGGRVTTVNRFNLPILRYI-QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENG---- 387 (480)
Q Consensus 313 ni~~p~~~~~~~~~~G~i~~~~~~~~P~L~~l-~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G---- 387 (480)
|+.+ ..+++++++|+++.+++.+||+|..+ ++++.++.|+||||++|||| +|++|.||++|+++++|+++++
T Consensus 2 n~~~--~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~ 78 (144)
T PF00190_consen 2 NLRE--PRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEE 78 (144)
T ss_dssp ETCS--SSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSE
T ss_pred CCCC--CCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCcccc
Confidence 4444 34589999999999999999976655 45555566799999999999 9999999999999999999986
Q ss_pred ceEEeee--cCCccEEEECCCcEEEEEcC--CCCeEEEEEEecCCCcceeeccccccccCCCHHHHHHHcCCCHHHH
Q 048197 388 ENVFDGQ--IREGQLIVVPQGFAVVKRAS--NRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEA 460 (480)
Q Consensus 388 ~~~f~~~--l~~GdV~vVPqg~~~~~~ag--~e~l~~v~f~ts~~~~~~~LAG~~svl~~lp~eVla~af~vs~e~~ 460 (480)
.+.+..+ |++|||++||+|++||+.|. ++.+.+++|.+++.... +|++|++++|+++.+++
T Consensus 79 ~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 79 FRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred ceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 2455556 99999999999999999886 56677788887655444 89999999999999875
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.89 E-value=5.3e-22 Score=180.68 Aligned_cols=139 Identities=38% Similarity=0.714 Sum_probs=128.9
Q ss_pred cccCCCeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEE
Q 048197 322 AYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLI 401 (480)
Q Consensus 322 ~~~~~~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~ 401 (480)
+|++++|+++++++.++|.++..++.+.+++|.||++..||||+++.++.||++|++.+.+.+..|+......+++||++
T Consensus 6 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~ 85 (146)
T smart00835 6 DFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVF 85 (146)
T ss_pred cccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEE
Confidence 68999999999999999999999999999999999999999999999999999999999999987766667789999999
Q ss_pred EECCCcEEEEEc-CCCCeEEEEEEecCCCcceeeccccccccCCCHHHHHHHcCCCHHHH
Q 048197 402 VVPQGFAVVKRA-SNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEA 460 (480)
Q Consensus 402 vVPqg~~~~~~a-g~e~l~~v~f~ts~~~~~~~LAG~~svl~~lp~eVla~af~vs~e~~ 460 (480)
+||+|..|+..+ +++++.+++|.+.+.+...+++|.+++|.+||++|++.+|+++++++
T Consensus 86 ~ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 86 VVPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAGRNSVLRGLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred EECCCCEEEEEcCCCCCEEEEEEecCCCCceeEeecccchhhcCCHHHHHHHhCcChHHc
Confidence 999999998765 57899999988877677788999999999999999999999999875
No 6
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.88 E-value=1.3e-21 Score=178.16 Aligned_cols=142 Identities=30% Similarity=0.561 Sum_probs=123.5
Q ss_pred CCCcceecCCceEEEeCCCC-hhccccCeeEEEEEEcCCeeecCcccC-CCeEEEEEeceEEEEEEcCCCccchhhhhhc
Q 048197 54 EPQQRVESEAGVTEFWDQND-EQLQCANVAVFRHRIQQRGLVVPSYTN-TPELFYVVQGRGIHGAVFPGCPETYQESQQR 131 (480)
Q Consensus 54 eP~~~~~se~G~~e~~~~~~-~~l~~~gvs~~r~~i~p~gl~lPh~~~-a~el~yV~~G~g~~g~v~pg~~etf~~~~~~ 131 (480)
+|...+++++|.+++|+... |.|++.++.+.+++|+||+...||||. +.+++||++|++.+.+..+++.+
T Consensus 2 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~-------- 73 (146)
T smart00835 2 EPRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNK-------- 73 (146)
T ss_pred CccccccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCe--------
Confidence 34446899999999999866 999999999999999999999999984 89999999999999987665432
Q ss_pred ccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeCCCCCccccccceeeeecCCCCcCccccccc
Q 048197 132 SSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLQGYSQS 211 (480)
Q Consensus 132 ~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~ 211 (480)
++.+.+++||+++||+|+.||+.|.+++++++++ +++.++. +.||++|.
T Consensus 74 ------------~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~-~~~~~~~-------~~~~~~~~----------- 122 (146)
T smart00835 74 ------------VYDARLREGDVFVVPQGHPHFQVNSGDENLEFVA-FNTNDPN-------RRFFLAGR----------- 122 (146)
T ss_pred ------------EEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEE-EecCCCC-------ceeEeecc-----------
Confidence 2368999999999999999999999999999996 4555542 56899885
Q ss_pred cCccccCCCCCCCCCcccccCcccccCCHHHHHhhcCCCHHHH
Q 048197 212 QGSRYQGSQGGEGGDRSRRGGNLFRGFDERLLAEAFNVNPDLI 254 (480)
Q Consensus 212 ~~~~~~g~~~~~~~~~~~~~~ni~~gf~~~~La~af~v~~~~~ 254 (480)
++||++|++++|+++|+++.+++
T Consensus 123 --------------------~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 123 --------------------NSVLRGLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred --------------------cchhhcCCHHHHHHHhCcChHHc
Confidence 58999999999999999999876
No 7
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.86 E-value=3e-21 Score=200.46 Aligned_cols=139 Identities=24% Similarity=0.388 Sum_probs=120.0
Q ss_pred CCeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECC
Q 048197 326 RGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQ 405 (480)
Q Consensus 326 ~~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPq 405 (480)
.+|++++++..+||+|+. |++.+++|.|||+++||||. +.||+||++|++++++++.+|+. |...|++||+++||+
T Consensus 49 ~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~g~~-~~~~L~~GD~~~fP~ 124 (367)
T TIGR03404 49 NGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDENGRN-YIDDVGAGDLWYFPP 124 (367)
T ss_pred cCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCCCcE-EEeEECCCCEEEECC
Confidence 699999999999999986 89999999999999999995 56999999999999999987765 444899999999999
Q ss_pred CcEEEEEcCCCCeEEEEEEecCCC---cceeeccccccccCCCHHHHHHHcCCCHHHHHHHHhcCCCeEEe
Q 048197 406 GFAVVKRASNRGLEWISFKTNDVA---KTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVF 473 (480)
Q Consensus 406 g~~~~~~ag~e~l~~v~f~ts~~~---~~~~LAG~~svl~~lp~eVla~af~vs~e~~~~l~~~q~e~~i~ 473 (480)
|++|++.+.+++++++.+++.... ..+.+ +++|+.+|.+||+++|+++++++++|++. +.+|+
T Consensus 125 g~~H~~~n~~~~~~~l~vf~~~~f~~~~~~~~---~~~l~~~p~~Vla~~f~l~~~~~~~l~~~--~~~~~ 190 (367)
T TIGR03404 125 GIPHSLQGLDEGCEFLLVFDDGNFSEDGTFLV---TDWLAHTPKDVLAKNFGVPESAFDNLPLK--ELYIF 190 (367)
T ss_pred CCeEEEEECCCCeEEEEEeCCcccCCcceeeH---HHHHHhCCHHHHHHHhCCCHHHHHhcccc--CceEE
Confidence 999998876777998886666542 22333 57888899999999999999999999874 56666
No 8
>PLN00212 glutelin; Provisional
Probab=99.85 E-value=1.3e-20 Score=200.51 Aligned_cols=150 Identities=15% Similarity=0.285 Sum_probs=125.2
Q ss_pred cccCCCeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEE----e-----
Q 048197 322 AYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVF----D----- 392 (480)
Q Consensus 322 ~~~~~~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f----~----- 392 (480)
.+..++|.+..+|.+ -+.|+++|+++.+++|+|+|++.|||| ||++++||++|+|.+++|.|....+| .
T Consensus 57 ri~se~G~~E~~~~~-~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~ 134 (493)
T PLN00212 57 KVRSEAGVTEYFDEK-NEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTE 134 (493)
T ss_pred hhcccCceeeecCCC-ChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccc
Confidence 457789999999954 699999999999999999999999998 99999999999999999986321111 1
Q ss_pred ---------------eecCCccEEEECCCcEEEEEc-CCCCeEEEEEEecCC--------Ccceeeccc-----------
Q 048197 393 ---------------GQIREGQLIVVPQGFAVVKRA-SNRGLEWISFKTNDV--------AKTSQLAGR----------- 437 (480)
Q Consensus 393 ---------------~~l~~GdV~vVPqg~~~~~~a-g~e~l~~v~f~ts~~--------~~~~~LAG~----------- 437 (480)
.+|++|||++||+|.+||..| |++++.+|++.+..+ +..++|||.
T Consensus 135 ~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~ 214 (493)
T PLN00212 135 GQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRS 214 (493)
T ss_pred ccccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCcccccccccc
Confidence 389999999999999999865 688887776554333 236789996
Q ss_pred ------cccccCCCHHHHHHHcCCCHHHHHHHHhcCC-CeEEe
Q 048197 438 ------ASVIRGLPLDVIQNSFQVSRDEAQRLKYNRQ-ELTVF 473 (480)
Q Consensus 438 ------~svl~~lp~eVla~af~vs~e~~~~l~~~q~-e~~i~ 473 (480)
.++|++++.++|+.||||+.+++++|...++ ...|+
T Consensus 215 ~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IV 257 (493)
T PLN00212 215 IEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEII 257 (493)
T ss_pred ccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEE
Confidence 3599999999999999999999999987653 35665
No 9
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.76 E-value=3.9e-18 Score=161.85 Aligned_cols=193 Identities=18% Similarity=0.244 Sum_probs=144.3
Q ss_pred CHHHHHhhcCCCHHHHHHhccccccceeEEEeccceeccCCcccchhhHHHhhhhcCCCCCCCccceeccccccCCCCCC
Q 048197 239 DERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEEELRVLSPQRGREQEQEQEQEFQGSGDNGIEETICTMKLKHNINDPS 318 (480)
Q Consensus 239 ~~~~La~af~v~~~~~~kl~~~~~~rg~Iv~v~~~l~~~~P~~~~~~e~~~~~~~~~~~~nG~ee~~~~~~l~~ni~~p~ 318 (480)
+..++++.|+++.++++.+..++. +|.+-... ..+. . +++-.+. ..+ .+.+ +.|.+..
T Consensus 2 ~~~~~~~~~~vd~~~~~~~p~~~~---~i~~~~~~-~~l~--~----d~~~~~~----~~~-~~~~-----~~yel~~-- 59 (209)
T COG2140 2 PKLFEPKNFGVDVRTGKLLPLKQV---YIKRGSDP-GGLY--A----DEDAYSM----LRK-KEDD-----FVYELLE-- 59 (209)
T ss_pred CceeccccccchhhhhhcCCccce---eEEeccCC-cccc--c----CHHHHHH----hcC-CCCc-----eEEEeec--
Confidence 456788999999999988877653 77765421 1010 1 1111111 011 1221 3344442
Q ss_pred CCCcccCCCeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCce--EEEEEEeeEEEEEEecCCceEEeeecC
Q 048197 319 GADAYNPRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHS--VVYITRGNGRMQIVAENGENVFDGQIR 396 (480)
Q Consensus 319 ~~~~~~~~~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~e--i~yV~~G~grv~vv~~~G~~~f~~~l~ 396 (480)
..+..+ +|.+....+..+|.. +.+.+.++||+|++.||||+|+| |.||++|+|++.|.+++|+. ...+++
T Consensus 60 ~~~~~~--~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~-~v~~~~ 131 (209)
T COG2140 60 SEPGER--GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEA-RVIAVR 131 (209)
T ss_pred cccccc--CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcE-EEEEec
Confidence 334443 999999999999986 66778999999999999999999 99999999999999999883 234899
Q ss_pred CccEEEECCCcEEEEEc-CCCCeEEEEEEecCCCcceeeccccccccCCCHHHHHHHcCCCHHHHHHHH
Q 048197 397 EGQLIVVPQGFAVVKRA-SNRGLEWISFKTNDVAKTSQLAGRASVIRGLPLDVIQNSFQVSRDEAQRLK 464 (480)
Q Consensus 397 ~GdV~vVPqg~~~~~~a-g~e~l~~v~f~ts~~~~~~~LAG~~svl~~lp~eVla~af~vs~e~~~~l~ 464 (480)
+||+++||.++.|+.+| |+++|.++.....+......+ ..++..++..++++.|+.+....+.++
T Consensus 132 ~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~D~p~ 197 (209)
T COG2140 132 AGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDL---IAWLGGMPPVLVENGLNKNPKYVDVPR 197 (209)
T ss_pred CCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeee---eehhccCCceeeccccccCcccccCcc
Confidence 99999999999999855 789999998877776666555 688899999999999998877666553
No 10
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.38 E-value=1.2e-10 Score=116.10 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=60.9
Q ss_pred ceeEEeeeeccccccc-cccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc-CCCCeEEEE
Q 048197 345 QLSAEKGNLYQNAMMA-PHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA-SNRGLEWIS 422 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~-PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a-g~e~l~~v~ 422 (480)
++.+..++|+||+-.. .|.|...| ..||++|+|.+.+ +|+.. +|++||+++||++.+|+..| |+++|+||-
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh-~~yiL~G~G~~~~---~g~~~---~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ 250 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEH-GLYVLEGKGVYNL---DNNWV---PVEAGDYIWMGAYCPQACYAGGRGEFRYLL 250 (260)
T ss_pred CcEEEEEEECCCcccCCccccccee-EEEEEeceEEEEE---CCEEE---EecCCCEEEECCCCCEEEEecCCCcEEEEE
Confidence 4677779999999998 46666554 5599999999855 45443 69999999999999999866 689999998
Q ss_pred EEec
Q 048197 423 FKTN 426 (480)
Q Consensus 423 f~ts 426 (480)
.++-
T Consensus 251 ykd~ 254 (260)
T TIGR03214 251 YKDM 254 (260)
T ss_pred Eccc
Confidence 8853
No 11
>PRK11171 hypothetical protein; Provisional
Probab=99.32 E-value=5.5e-10 Score=111.78 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=131.3
Q ss_pred ccCeeEEEEEEcCCeeecCccc--CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEE
Q 048197 78 CANVAVFRHRIQQRGLVVPSYT--NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLV 155 (480)
Q Consensus 78 ~~gvs~~r~~i~p~gl~lPh~~--~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~ 155 (480)
..++.+..++|.||+-...+++ ...+++||++|++.+.+- | +.+.|++||.+
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~--g------------------------~~~~L~~GDsi 111 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLE--G------------------------KTHALSEGGYA 111 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEEC--C------------------------EEEEECCCCEE
Confidence 4578889999999986555554 357999999999999851 2 25799999999
Q ss_pred EeCCCCEEEEEcCCCCcEEEEEEeeCCCCCccccccceeeeecCCCCcCccccccccCccccCCCCCCCCCcccccCccc
Q 048197 156 ALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLQGYSQSQGSRYQGSQGGEGGDRSRRGGNLF 235 (480)
Q Consensus 156 ~iPaG~~h~~~N~G~~~l~~v~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ni~ 235 (480)
++|++.+|.+.|.+++++.++++.-.-.+ + .+
T Consensus 112 ~~p~~~~H~~~N~g~~~a~~l~v~~~y~~------------~----------------------------------~~-- 143 (266)
T PRK11171 112 YLPPGSDWTLRNAGAEDARFHWIRKRYEP------------V----------------------------------EG-- 143 (266)
T ss_pred EECCCCCEEEEECCCCCEEEEEEEcCCeE------------c----------------------------------CC--
Confidence 99999999999999999999887421110 0 00
Q ss_pred ccCCHHHHHhhcCCCHHHHHHhccccccceeEEEeccceeccCCcccchhhHHHhhhhcCCCCCCCccceeccccccCCC
Q 048197 236 RGFDERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEEELRVLSPQRGREQEQEQEQEFQGSGDNGIEETICTMKLKHNIN 315 (480)
Q Consensus 236 ~gf~~~~La~af~v~~~~~~kl~~~~~~rg~Iv~v~~~l~~~~P~~~~~~e~~~~~~~~~~~~nG~ee~~~~~~l~~ni~ 315 (480)
.+.+ + ..|-.+. ++ .+..
T Consensus 144 -~~~p---------------------~--~~~~~~~-d~---~~~~---------------------------------- 161 (266)
T PRK11171 144 -HEAP---------------------E--AFVGNES-DI---EPIP---------------------------------- 161 (266)
T ss_pred -CCCC---------------------C--eEecchh-cc---cccc----------------------------------
Confidence 1100 0 0111111 00 0000
Q ss_pred CCCCCCcccCCCeEEE--EEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEee
Q 048197 316 DPSGADAYNPRGGRVT--TVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDG 393 (480)
Q Consensus 316 ~p~~~~~~~~~~G~i~--~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~ 393 (480)
+-.-.+..+. .+++.+ . ..++.+..++|.||+-...|-|-...|.+||++|++.+.+ +|+. +
T Consensus 162 ------~~g~~g~~~~~~~~~p~~---~-~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~~~~-~-- 225 (266)
T PRK11171 162 ------MPGTDGVWATTRLVDPED---L-RFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---NNDW-V-- 225 (266)
T ss_pred ------cCCCCCeEEEEEeeCchh---c-CCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---CCEE-E--
Confidence 0000111111 111111 1 1236788899999999988533456699999999999975 2333 3
Q ss_pred ecCCccEEEECCCcEEEEEc-CCCCeEEEEEEec
Q 048197 394 QIREGQLIVVPQGFAVVKRA-SNRGLEWISFKTN 426 (480)
Q Consensus 394 ~l~~GdV~vVPqg~~~~~~a-g~e~l~~v~f~ts 426 (480)
.|++||++++|.+-+|+..| |++.+.|+.+++-
T Consensus 226 ~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~ 259 (266)
T PRK11171 226 EVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDV 259 (266)
T ss_pred EeCCCCEEEECCCCCEEEECCCCCcEEEEEEccc
Confidence 69999999999999998865 7899999999853
No 12
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=110.01 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=82.9
Q ss_pred ccCCCCCCcceecCCceEEEeCCCChhccccCeeEEEEEEcCCeeecCccc-CCCe--EEEEEeceEEEEEEcCCCccch
Q 048197 49 DLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYT-NTPE--LFYVVQGRGIHGAVFPGCPETY 125 (480)
Q Consensus 49 ~L~a~eP~~~~~se~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~-~a~e--l~yV~~G~g~~g~v~pg~~etf 125 (480)
.|...+|..+ +|.+..-+... +. |-+..-+++.||++++-||| ++++ |+||++|+|.+.+-.|.+.-
T Consensus 56 el~~~~~~~~----~g~L~~~~t~~--~p--Gs~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~-- 125 (209)
T COG2140 56 ELLESEPGER----GGDLRLDVTRI--FP--GSAGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEA-- 125 (209)
T ss_pred Eeeccccccc----CCeEEEEeecc--CC--CccceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcE--
Confidence 6666667432 77776655443 22 33667789999999999998 5777 99999999999997775321
Q ss_pred hhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeC
Q 048197 126 QESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDV 181 (480)
Q Consensus 126 ~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~ 181 (480)
.+.++++||+++||++..|++.|+|++||+++.++-.
T Consensus 126 -------------------~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~ 162 (209)
T COG2140 126 -------------------RVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPA 162 (209)
T ss_pred -------------------EEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeC
Confidence 2679999999999999999999999999999988743
No 13
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.8e-09 Score=96.33 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=67.6
Q ss_pred ccCeeEEEEEEcCCeee-cCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEE
Q 048197 78 CANVAVFRHRIQQRGLV-VPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVA 156 (480)
Q Consensus 78 ~~gvs~~r~~i~p~gl~-lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~ 156 (480)
.....+.+++++||+-. +++++..+|+.||++|+|++.+= . +...|++||+++
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~---~-----------------------~~~~v~~gd~~~ 86 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG---G-----------------------EEVEVKAGDSVY 86 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC---C-----------------------EEEEecCCCEEE
Confidence 35788999999999975 55555699999999999999872 1 257999999999
Q ss_pred eCCCCEEEEEcCCCCcEEEEEEeeCCC
Q 048197 157 LPTGSANWIYNDGPSELVVVALVDVGN 183 (480)
Q Consensus 157 iPaG~~h~~~N~G~~~l~~v~~~d~~n 183 (480)
||+|+.|++.|.|+.+|.++++.....
T Consensus 87 iP~g~~H~~~N~G~~~L~liei~~p~~ 113 (127)
T COG0662 87 IPAGTPHRVRNTGKIPLVLIEVQSPPY 113 (127)
T ss_pred ECCCCcEEEEcCCCcceEEEEEecCCc
Confidence 999999999999999999998865444
No 14
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=99.00 E-value=4.4e-09 Score=108.08 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=65.3
Q ss_pred CeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
.+.+..-.|.||-...||-|++..+.||++|+|...+|.. +...+++||+|++|+
T Consensus 80 tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~g-------------------------~~~~~~~gD~~~tP~ 134 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVDG-------------------------ERTTMHPGDFIITPS 134 (335)
T ss_pred hHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEECC-------------------------EEEeeeCCCEEEeCC
Confidence 3444556889999999999999999999999997666632 136999999999999
Q ss_pred CCEEEEEcCCCCcEEEEEEeeCC
Q 048197 160 GSANWIYNDGPSELVVVALVDVG 182 (480)
Q Consensus 160 G~~h~~~N~G~~~l~~v~~~d~~ 182 (480)
+.-|--.|+||++++.+.++|.-
T Consensus 135 w~wH~H~n~~d~~~~wld~lD~P 157 (335)
T TIGR02272 135 WTWHDHGNPGDEPMIWLDGLDIP 157 (335)
T ss_pred CeeEecccCCCCcEEEEecCCHH
Confidence 99999999999998888777653
No 15
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.96 E-value=3.5e-09 Score=83.52 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=60.5
Q ss_pred EEEEcCCeeecCcccCCC-eEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEE
Q 048197 85 RHRIQQRGLVVPSYTNTP-ELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSAN 163 (480)
Q Consensus 85 r~~i~p~gl~lPh~~~a~-el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h 163 (480)
.+++.||+-..+|+|... +++||++|++.+.+ .| +...+++||++++|+|..|
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~--~~------------------------~~~~l~~Gd~~~i~~~~~H 55 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV--DG------------------------ERVELKPGDAIYIPPGVPH 55 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE--TT------------------------EEEEEETTEEEEEETTSEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE--cc------------------------EEeEccCCEEEEECCCCeE
Confidence 578999998888888766 99999999999983 22 1479999999999999999
Q ss_pred EEEcCCCCcEEEEEEe
Q 048197 164 WIYNDGPSELVVVALV 179 (480)
Q Consensus 164 ~~~N~G~~~l~~v~~~ 179 (480)
++.|.++++++++.++
T Consensus 56 ~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 56 QVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEESSSEEEEEEEE
T ss_pred EEEECCCCCEEEEEEC
Confidence 9999999999998774
No 16
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.93 E-value=1.2e-08 Score=91.03 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=67.5
Q ss_pred ccCeeEEEEEEcCCeeecCcccC-CCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEE
Q 048197 78 CANVAVFRHRIQQRGLVVPSYTN-TPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVA 156 (480)
Q Consensus 78 ~~gvs~~r~~i~p~gl~lPh~~~-a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~ 156 (480)
...+.+..++++||+....|.|+ .++.+||++|++.+.+- | + .+.+++||+++
T Consensus 40 ~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g--~----------------------~~~l~~Gd~i~ 93 (131)
T COG1917 40 GENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--G--E----------------------KKELKAGDVII 93 (131)
T ss_pred CceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec--C--C----------------------ceEecCCCEEE
Confidence 44677889999999999999998 88999999999999984 2 1 47999999999
Q ss_pred eCCCCEEEEEcCCCCcEEEEEEeeC
Q 048197 157 LPTGSANWIYNDGPSELVVVALVDV 181 (480)
Q Consensus 157 iPaG~~h~~~N~G~~~l~~v~~~d~ 181 (480)
+|+|+.||+.|+++++.+.|+++..
T Consensus 94 ip~g~~H~~~a~~~~~~~~l~v~~~ 118 (131)
T COG1917 94 IPPGVVHGLKAVEDEPMVLLLVFPL 118 (131)
T ss_pred ECCCCeeeeccCCCCceeEEEEeee
Confidence 9999999999999987677776644
No 17
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.87 E-value=3.6e-08 Score=88.00 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=74.1
Q ss_pred eecCCceEEEeCCCChhccccCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccc
Q 048197 59 VESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSR 138 (480)
Q Consensus 59 ~~se~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~ 138 (480)
+.+.+|.+..+...++ ..++++.+++|+||+-...|+++..+++||++|++.+..+.-|
T Consensus 16 ~~~~~~~~krll~~~~---~~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g------------------ 74 (125)
T PRK13290 16 VKAGNWTSRRLLLKDD---GMGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATG------------------ 74 (125)
T ss_pred eecCCceEEEEEEecC---CCCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCC------------------
Confidence 5567777776654322 2468899999999997777777657999999999999833111
Q ss_pred cccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeC
Q 048197 139 SQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDV 181 (480)
Q Consensus 139 ~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~ 181 (480)
+...|.+||.+++|++.+|++.|. +++++++++..
T Consensus 75 ------~~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~tP 109 (125)
T PRK13290 75 ------EVHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFNP 109 (125)
T ss_pred ------EEEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEECC
Confidence 257999999999999999999997 88999988653
No 18
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.86 E-value=4e-08 Score=93.76 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=71.5
Q ss_pred hccccCeeEEEEEEcCCee------ecCcccC---CCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccce
Q 048197 75 QLQCANVAVFRHRIQQRGL------VVPSYTN---TPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQK 145 (480)
Q Consensus 75 ~l~~~gvs~~r~~i~p~gl------~lPh~~~---a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk 145 (480)
.+...++.+...+|.||.+ ..+|||. .+|++||++|+|.+-+-.+... -+
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~---------------------~~ 120 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGE---------------------AR 120 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCc---------------------EE
Confidence 4556688999999999997 4568983 4699999999999987543210 12
Q ss_pred eEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeCC
Q 048197 146 VRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVG 182 (480)
Q Consensus 146 ~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~~ 182 (480)
...+++||+++||+|.+|.+.|+|+++|+++++....
T Consensus 121 ~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 121 WIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EEEECCCCEEEECCCCcEEeEECCCCCEEEEEEEcCC
Confidence 5799999999999999999999999999999987544
No 19
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.84 E-value=3.7e-08 Score=93.95 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=73.0
Q ss_pred CcccccceeEEeeeeccccc------cccccccCCc--eEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEE
Q 048197 339 PILRYIQLSAEKGNLYQNAM------MAPHWNLNAH--SVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVV 410 (480)
Q Consensus 339 P~L~~l~lsa~~v~L~pgam------~~PHwh~nA~--ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~ 410 (480)
|.++.-+|.+..+.|.||.+ ..+|||++++ |+.||++|+|.+.+-+.+|.. ....+++||+++||.|+.|.
T Consensus 61 ~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~-~~~~v~pGd~v~IPpg~~H~ 139 (191)
T PRK04190 61 PEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEA-RWIEMEPGTVVYVPPYWAHR 139 (191)
T ss_pred CCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcE-EEEEECCCCEEEECCCCcEE
Confidence 34555689999999999996 6679999765 999999999999998877652 23479999999999999997
Q ss_pred E-EcCCCCeEEEEEEecC
Q 048197 411 K-RASNRGLEWISFKTND 427 (480)
Q Consensus 411 ~-~ag~e~l~~v~f~ts~ 427 (480)
. +.|+++|+++++...+
T Consensus 140 ~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 140 SVNTGDEPLVFLACYPAD 157 (191)
T ss_pred eEECCCCCEEEEEEEcCC
Confidence 6 4578999999977543
No 20
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.75 E-value=3.6e-08 Score=77.72 Aligned_cols=69 Identities=20% Similarity=0.408 Sum_probs=59.2
Q ss_pred eeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc-CCCCeEEEEEE
Q 048197 350 KGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA-SNRGLEWISFK 424 (480)
Q Consensus 350 ~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a-g~e~l~~v~f~ 424 (480)
+++|.||+-..+|+|+...++.||++|++.+. ++ |+ .+ .|++||.+++|++-.|...| +++++.|+.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~--~~-~~--~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD--GE-RV--ELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET--TE-EE--EEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec--cE-Ee--EccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 57899999999999999999999999999998 55 33 33 69999999999999998755 67889998763
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.75 E-value=8e-08 Score=95.96 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=65.5
Q ss_pred CeeEEEEEEcCCeeecC-cccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 80 NVAVFRHRIQQRGLVVP-SYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lP-h~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
+..+..++++||+-.-. |+|...+.+||++|+|++.+ +. +...|++||+++||
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~---~g-----------------------~~~~V~~GD~i~i~ 231 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL---DN-----------------------NWVPVEAGDYIWMG 231 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE---CC-----------------------EEEEecCCCEEEEC
Confidence 67777899999998764 55667889999999999976 21 25799999999999
Q ss_pred CCCEEEEEcCCCCcEEEEEEeeCCC
Q 048197 159 TGSANWIYNDGPSELVVVALVDVGN 183 (480)
Q Consensus 159 aG~~h~~~N~G~~~l~~v~~~d~~n 183 (480)
+|.+||++|.|++++.++.--|++-
T Consensus 232 ~~~~h~~~~~G~~~~~~l~ykd~nr 256 (260)
T TIGR03214 232 AYCPQACYAGGRGEFRYLLYKDMNR 256 (260)
T ss_pred CCCCEEEEecCCCcEEEEEEccccC
Confidence 9999999999999999986667653
No 22
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.69 E-value=7.6e-08 Score=87.80 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=65.0
Q ss_pred eeEEEEEEcCCee-ecCcccC-CCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 81 VAVFRHRIQQRGL-VVPSYTN-TPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 81 vs~~r~~i~p~gl-~lPh~~~-a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
+.+....++||+- .++|||. -+|++||++|++.+-+ +.. +..|++||++.+|
T Consensus 42 fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~-----------------------e~~lrpGD~~gFp 95 (161)
T COG3837 42 FGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGG-----------------------ETRLRPGDSAGFP 95 (161)
T ss_pred cccceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCe-----------------------eEEecCCceeecc
Confidence 3344568999994 6889986 6899999999998865 221 4799999999999
Q ss_pred CC--CEEEEEcCCCCcEEEEEEeeCCCC
Q 048197 159 TG--SANWIYNDGPSELVVVALVDVGNS 184 (480)
Q Consensus 159 aG--~~h~~~N~G~~~l~~v~~~d~~n~ 184 (480)
|| ++|.+.|.++..++++++.+..+.
T Consensus 96 AG~~~aHhliN~s~~~~~yL~vG~r~~~ 123 (161)
T COG3837 96 AGVGNAHHLINRSDVILRYLEVGTREPD 123 (161)
T ss_pred CCCcceeEEeecCCceEEEEEecccccc
Confidence 99 999999999999999998876654
No 23
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.53 E-value=9.1e-07 Score=88.36 Aligned_cols=259 Identities=17% Similarity=0.198 Sum_probs=155.9
Q ss_pred cceecCCceEEEeCCCChhccccC-ee----EEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhc
Q 048197 57 QRVESEAGVTEFWDQNDEQLQCAN-VA----VFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQR 131 (480)
Q Consensus 57 ~~~~se~G~~e~~~~~~~~l~~~g-vs----~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~ 131 (480)
..+..+.|.-++.--.||.|+... +. +.---|-||-....|-|+...+-||++|+|..++|.-.
T Consensus 63 eli~~~~a~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdGe----------- 131 (351)
T COG3435 63 ELISAREAVRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDGE----------- 131 (351)
T ss_pred hccCcccceeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccccceEEEEeccceeEeecCc-----------
Confidence 445666676666655666666431 00 11225788888888889999999999999999998421
Q ss_pred ccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeCCCCCccccccceeeeecCCCCcCccccccc
Q 048197 132 SSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLGGNPQPQLQGYSQS 211 (480)
Q Consensus 132 ~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~ 211 (480)
--..++||.|..|++.-|---|.|++|++++-.+|+.- .|+|+- .||
T Consensus 132 --------------r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDipl-v~~l~~---gFf--------------- 178 (351)
T COG3435 132 --------------RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDIPL-VNSLGA---GFF--------------- 178 (351)
T ss_pred --------------eeeccCCCEEEccCceeccCCCCCCCceEEEcccchHH-HHhhcc---ccc---------------
Confidence 13789999999999999999999999999998887643 223331 122
Q ss_pred cCccccCCCCCCCCCcccccCcccccCCHHHHHhhcCCCHHHHH------Hh--ccccccceeEEEeccceeccCCcccc
Q 048197 212 QGSRYQGSQGGEGGDRSRRGGNLFRGFDERLLAEAFNVNPDLIS------KL--QRPQMQKGIIVRVEEELRVLSPQRGR 283 (480)
Q Consensus 212 ~~~~~~g~~~~~~~~~~~~~~ni~~gf~~~~La~af~v~~~~~~------kl--~~~~~~rg~Iv~v~~~l~~~~P~~~~ 283 (480)
.-++++.....-..+...++ -| +..++- ..|++.. .
T Consensus 179 ------------------------e~~~e~~q~v~~~~~d~~ar~~~~~rP~~~r~~~~~-SPlf~Y~---------w-- 222 (351)
T COG3435 179 ------------------------EEHPEEQQPVTRPEGDSLARYGPGMRPLRHRWGKPY-SPLFNYA---------W-- 222 (351)
T ss_pred ------------------------ccCchhcCcccCCCCCchhhcCCCccccccCCCCCC-Ccccccc---------c--
Confidence 11222221111111111111 00 000000 0111110 0
Q ss_pred hhhHHHhhhhcCCCCCCCccceeccccccCCCCCCCCCcccCCCeEEEEEecCC--CCcccccceeEEeeeecccccccc
Q 048197 284 EQEQEQEQEFQGSGDNGIEETICTMKLKHNINDPSGADAYNPRGGRVTTVNRFN--LPILRYIQLSAEKGNLYQNAMMAP 361 (480)
Q Consensus 284 ~~e~~~~~~~~~~~~nG~ee~~~~~~l~~ni~~p~~~~~~~~~~G~i~~~~~~~--~P~L~~l~lsa~~v~L~pgam~~P 361 (480)
+..+ .-|+ +|. -+.+| |-+ +|-.++.+|+.+ .+.- .|++..-.|.||..-.+
T Consensus 223 --~~t~---------eAL~------~la-~~e~~---dp~--dG~~~ryvNP~TGg~~mp---tI~a~mqlL~~Gf~~~~ 276 (351)
T COG3435 223 --DRTR---------EALE------RLA-RLEEP---DPF--DGYKMRYVNPVTGGYAMP---TIGAFMQLLPPGFHGKA 276 (351)
T ss_pred --ccHH---------HHHH------HHH-hccCC---CCC--CcceEEEecCCCCCCcCc---hHHHHHHhcCCcccCCc
Confidence 0000 0010 010 01112 211 344566666543 2222 37777788899999999
Q ss_pred ccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEEEecCCCc
Q 048197 362 HWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFKTNDVAK 430 (480)
Q Consensus 362 Hwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f~ts~~~~ 430 (480)
|-|.++ .|.-|.+|+|.+.|=+ ..| +.++||+||||.=..|-..|+.++..+++|. |.|.
T Consensus 277 ~r~t~s-~iy~V~eGsg~~~Ig~----~rf--~~~~~D~fvVPsW~~~~~~~gs~da~LFsfs--D~PV 336 (351)
T COG3435 277 HRHTDS-TIYHVVEGSGYTIIGG----ERF--DWSAGDIFVVPSWAWHEHVNGSEDAVLFSFS--DRPV 336 (351)
T ss_pred eeccCC-EEEEEEecceeEEECC----EEe--eccCCCEEEccCcceeecccCCcceEEEecC--CcHH
Confidence 998766 5666889999988733 356 6899999999998888888988888888885 5553
No 24
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.52 E-value=8.3e-07 Score=79.27 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=65.4
Q ss_pred cceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEE
Q 048197 344 IQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423 (480)
Q Consensus 344 l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f 423 (480)
.++++.+++|+||+-...|+|.. .|+.||++|++.+.+++. |+ .+ .|.+||.+++|.+-+|.+.|. ++++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~-g~-~~--~L~aGD~i~~~~~~~H~~~N~-e~~~~l~v 106 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT-GE-VH--PIRPGTMYALDKHDRHYLRAG-EDMRLVCV 106 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC-CE-EE--EeCCCeEEEECCCCcEEEEcC-CCEEEEEE
Confidence 45799999999999888899866 599999999999995531 22 33 699999999999999999887 89999998
Q ss_pred EecC
Q 048197 424 KTND 427 (480)
Q Consensus 424 ~ts~ 427 (480)
.+..
T Consensus 107 ~tP~ 110 (125)
T PRK13290 107 FNPP 110 (125)
T ss_pred ECCC
Confidence 7643
No 25
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=9.2e-07 Score=78.92 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=69.2
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc-CCCCeEEEEE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA-SNRGLEWISF 423 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a-g~e~l~~v~f 423 (480)
..++.++.+.||+-..+|.|...+|+.||++|+|.|.+=+ . .+ .|++||+++||+|.+|...| |+.+|+++++
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~---~-~~--~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG---E-EV--EVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC---E-EE--EecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 5789999999999999999999999999999999998863 3 33 59999999999999999866 6899999999
Q ss_pred EecCCC
Q 048197 424 KTNDVA 429 (480)
Q Consensus 424 ~ts~~~ 429 (480)
......
T Consensus 109 ~~p~~~ 114 (127)
T COG0662 109 QSPPYL 114 (127)
T ss_pred ecCCcC
Confidence 866544
No 26
>PRK11171 hypothetical protein; Provisional
Probab=98.45 E-value=2e-06 Score=86.28 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=66.6
Q ss_pred CeeEEEEEEcCCeeecC-cccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 80 NVAVFRHRIQQRGLVVP-SYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lP-h~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
+..+..++|+||+-.-. |++...+.+||++|++.+.+ ++ +.+.|++||++.+|
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~~-----------------------~~~~l~~GD~i~~~ 236 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---NN-----------------------DWVEVEAGDFIWMR 236 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---CC-----------------------EEEEeCCCCEEEEC
Confidence 36888999999997655 46778899999999999976 22 25799999999999
Q ss_pred CCCEEEEEcCCCCcEEEEEEeeCCC
Q 048197 159 TGSANWIYNDGPSELVVVALVDVGN 183 (480)
Q Consensus 159 aG~~h~~~N~G~~~l~~v~~~d~~n 183 (480)
++.+||++|.|+++++++..-|++-
T Consensus 237 ~~~~h~~~N~g~~~~~yl~~k~~nr 261 (266)
T PRK11171 237 AYCPQACYAGGPGPFRYLLYKDVNR 261 (266)
T ss_pred CCCCEEEECCCCCcEEEEEEccccc
Confidence 9999999999999999998777653
No 27
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.41 E-value=2.1e-06 Score=92.77 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=63.6
Q ss_pred cCeeEEEEEEcCCeeecCcc-cCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEe
Q 048197 79 ANVAVFRHRIQQRGLVVPSY-TNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVAL 157 (480)
Q Consensus 79 ~gvs~~r~~i~p~gl~lPh~-~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~i 157 (480)
.++.+.++++.||+-...|+ +...|..||++|++.+.+- . +.+.|.+||.+.|
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id---g-----------------------~~~~L~~GDSi~i 436 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID---G-----------------------DIKLLGENESIYI 436 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC---C-----------------------EEEEecCCCEEEE
Confidence 36788999999998543444 4567999999999999872 1 2579999999999
Q ss_pred CCCCEEEEEcCCCCcEEEEEEe
Q 048197 158 PTGSANWIYNDGPSELVVVALV 179 (480)
Q Consensus 158 PaG~~h~~~N~G~~~l~~v~~~ 179 (480)
|+|.+|++.|.|++++++|++.
T Consensus 437 p~g~~H~~~N~g~~~l~iI~V~ 458 (478)
T PRK15460 437 PLGATHCLENPGKIPLDLIEVR 458 (478)
T ss_pred CCCCcEEEEcCCCCCEEEEEEE
Confidence 9999999999999999999985
No 28
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.40 E-value=3.3e-06 Score=77.83 Aligned_cols=88 Identities=24% Similarity=0.313 Sum_probs=75.0
Q ss_pred eecCCceEEEeCCCChhccccCeeEEEEEEcCCeeecCccc-CCCeEEEEEeceEEEEEEcCCCccchhhhhhccccccc
Q 048197 59 VESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYT-NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQS 137 (480)
Q Consensus 59 ~~se~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~-~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~ 137 (480)
..---|..+.++... ++.+-|+++.||.-+-.++| ...|.-+|++|.|.+.+ +.
T Consensus 47 ~~rpWG~~~~l~~~~------~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~---------------- 101 (151)
T PF01050_consen 47 VYRPWGSYEVLDEGE------GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DD---------------- 101 (151)
T ss_pred EecCCcEEEEEEccC------CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CC----------------
Confidence 334578888888543 68889999999998888876 58999999999999986 21
Q ss_pred ccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEE
Q 048197 138 RSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVAL 178 (480)
Q Consensus 138 ~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~ 178 (480)
++..+.+||.+.||+|..|-+.|.|+.+|++|-+
T Consensus 102 -------~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEV 135 (151)
T PF01050_consen 102 -------EEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEV 135 (151)
T ss_pred -------EEEEEcCCCEEEECCCCEEEEECCCCcCcEEEEE
Confidence 2579999999999999999999999999999876
No 29
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.37 E-value=7.1e-07 Score=79.62 Aligned_cols=61 Identities=23% Similarity=0.498 Sum_probs=55.5
Q ss_pred cccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEEE
Q 048197 361 PHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFK 424 (480)
Q Consensus 361 PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f~ 424 (480)
-|||.+|||++.|++|++.+++-.++|..+ ++.+||+++||+|..|+...++-+|.+++-.
T Consensus 58 HHYHs~aHEVl~vlrgqA~l~iGG~~G~el---~v~~GDvlliPAGvGH~rl~sS~DF~VvGaY 118 (163)
T COG4297 58 HHYHSGAHEVLGVLRGQAGLQIGGADGQEL---EVGEGDVLLIPAGVGHCRLHSSADFQVVGAY 118 (163)
T ss_pred ccccCCcceEEEEecceeEEEecCCCCcee---eecCCCEEEEecCcccccccCCCCeEEEccc
Confidence 599999999999999999999999999876 5999999999999999988777788888655
No 30
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.34 E-value=3.4e-06 Score=75.15 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=65.3
Q ss_pred cccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcC-CCCeEE
Q 048197 342 RYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAS-NRGLEW 420 (480)
Q Consensus 342 ~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag-~e~l~~ 420 (480)
...++.+..+.+.||+....|.||-..+.+||++|++++++-. .. ..+++||++++|+|-.|+..|. +..+.+
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g---~~---~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~ 112 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG---EK---KELKAGDVIIIPPGVVHGLKAVEDEPMVL 112 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecC---Cc---eEecCCCEEEECCCCeeeeccCCCCceeE
Confidence 3557899999999999999999997779999999999999982 22 2699999999999999998764 444566
Q ss_pred EEEEec
Q 048197 421 ISFKTN 426 (480)
Q Consensus 421 v~f~ts 426 (480)
|+....
T Consensus 113 l~v~~~ 118 (131)
T COG1917 113 LLVFPL 118 (131)
T ss_pred EEEeee
Confidence 665543
No 31
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.29 E-value=3.7e-06 Score=90.74 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=64.4
Q ss_pred ccCeeEEEEEEcCCeeecCccc-CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEE
Q 048197 78 CANVAVFRHRIQQRGLVVPSYT-NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVA 156 (480)
Q Consensus 78 ~~gvs~~r~~i~p~gl~lPh~~-~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~ 156 (480)
..++.+.+++++||+-.-+|+| ...|..||++|++.+.+ +. +...|++||.++
T Consensus 373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~---dg-----------------------~~~~l~~GDsi~ 426 (468)
T TIGR01479 373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI---GD-----------------------ETLLLTENESTY 426 (468)
T ss_pred CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE---CC-----------------------EEEEecCCCEEE
Confidence 3468888999999996655554 57788899999999986 21 257999999999
Q ss_pred eCCCCEEEEEcCCCCcEEEEEEe
Q 048197 157 LPTGSANWIYNDGPSELVVVALV 179 (480)
Q Consensus 157 iPaG~~h~~~N~G~~~l~~v~~~ 179 (480)
||+|.+|.+.|.|+++++++++.
T Consensus 427 ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 427 IPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred ECCCCcEEEEcCCCCCEEEEEEE
Confidence 99999999999999999999885
No 32
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.23 E-value=1.5e-05 Score=73.49 Aligned_cols=89 Identities=12% Similarity=0.246 Sum_probs=76.3
Q ss_pred CCeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECC
Q 048197 326 RGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQ 405 (480)
Q Consensus 326 ~~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPq 405 (480)
.-|+...++..+ +..+-++.+.||..++.|+|..-+|.-+|++|+|.+++ ++ ..+ .+.+||.++||+
T Consensus 50 pWG~~~~l~~~~-------~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~-~~~--~~~~g~sv~Ip~ 116 (151)
T PF01050_consen 50 PWGSYEVLDEGE-------GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DD-EEF--TLKEGDSVYIPR 116 (151)
T ss_pred CCcEEEEEEccC-------CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CC-EEE--EEcCCCEEEECC
Confidence 478988888543 47789999999999999999999999999999999997 22 334 599999999999
Q ss_pred CcEEEEEc-CCCCeEEEEEEecC
Q 048197 406 GFAVVKRA-SNRGLEWISFKTND 427 (480)
Q Consensus 406 g~~~~~~a-g~e~l~~v~f~ts~ 427 (480)
|..|.+.| |+.+|+++.+-+..
T Consensus 117 g~~H~i~n~g~~~L~~IEVq~G~ 139 (151)
T PF01050_consen 117 GAKHRIENPGKTPLEIIEVQTGE 139 (151)
T ss_pred CCEEEEECCCCcCcEEEEEecCC
Confidence 99999976 68899999987643
No 33
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.21 E-value=1e-05 Score=76.55 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=61.5
Q ss_pred CeeEEEEEEcCCeeec-CcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 80 NVAVFRHRIQQRGLVV-PSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 80 gvs~~r~~i~p~gl~l-Ph~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
.+.+...++.|++-.. ++||+..|++||++|+..+.+ +. +.+.|++||.++||
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~---~~-----------------------~~~~l~~Gd~~~~~ 159 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI---NG-----------------------QDYHLVAGQSYAIN 159 (185)
T ss_pred eeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE---CC-----------------------EEEEecCCCEEEEc
Confidence 4556677899998544 455788999999999999876 21 25799999999999
Q ss_pred CCCEEEEEcCCCCcEEEEEEe
Q 048197 159 TGSANWIYNDGPSELVVVALV 179 (480)
Q Consensus 159 aG~~h~~~N~G~~~l~~v~~~ 179 (480)
++++|.+.|.+++++.++++.
T Consensus 160 ~~~~H~~~n~~~~~~~~l~~~ 180 (185)
T PRK09943 160 TGIPHSFSNTSAGICRIISAH 180 (185)
T ss_pred CCCCeeeeCCCCCCeEEEEEe
Confidence 999999999999999988875
No 34
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.09 E-value=3e-05 Score=73.51 Aligned_cols=88 Identities=18% Similarity=0.311 Sum_probs=53.6
Q ss_pred cccccceeEEeeeecccc------ccccccccC------CceEEEEEEeeEEEEEEecCCc---eEEeeecCCccEEEEC
Q 048197 340 ILRYIQLSAEKGNLYQNA------MMAPHWNLN------AHSVVYITRGNGRMQIVAENGE---NVFDGQIREGQLIVVP 404 (480)
Q Consensus 340 ~L~~l~lsa~~v~L~pga------m~~PHwh~n------A~ei~yV~~G~grv~vv~~~G~---~~f~~~l~~GdV~vVP 404 (480)
.|+.-+|-.....|.||- |.--|||+. ..|+-+|++|+|.+-+-+..|. .++--++.+||+++||
T Consensus 44 ~~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IP 123 (182)
T PF06560_consen 44 WLQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIP 123 (182)
T ss_dssp ------EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-
T ss_pred cceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEEC
Confidence 344445666666677764 566799998 7899999999999999999882 3344589999999999
Q ss_pred CCcEEEE-EcCCCCeEEEEEEecC
Q 048197 405 QGFAVVK-RASNRGLEWISFKTND 427 (480)
Q Consensus 405 qg~~~~~-~ag~e~l~~v~f~ts~ 427 (480)
.+|+|.. |+|+++|.+.+.-..+
T Consensus 124 p~yaH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 124 PGYAHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp TT-EEEEEE-SSS-EEEEEEEETT
T ss_pred CCceEEEEECCCCcEEEEEEEecC
Confidence 9999986 5578999988766543
No 35
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.01 E-value=3.2e-05 Score=83.53 Aligned_cols=89 Identities=12% Similarity=0.174 Sum_probs=72.7
Q ss_pred CCeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECC
Q 048197 326 RGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQ 405 (480)
Q Consensus 326 ~~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPq 405 (480)
..|....++.. -++.+..++|.||+-..+|+|+...|..||++|++.+.+= |+ .+ .|++||.++||.
T Consensus 363 pWG~~~~~~~~-------~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d---g~-~~--~l~~GDsi~ip~ 429 (468)
T TIGR01479 363 PWGKYDSIDQG-------DRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG---DE-TL--LLTENESTYIPL 429 (468)
T ss_pred CCCceEEEecC-------CCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC---CE-EE--EecCCCEEEECC
Confidence 36666665433 2588899999999988999999999999999999999753 23 33 699999999999
Q ss_pred CcEEEEEc-CCCCeEEEEEEecC
Q 048197 406 GFAVVKRA-SNRGLEWISFKTND 427 (480)
Q Consensus 406 g~~~~~~a-g~e~l~~v~f~ts~ 427 (480)
|.+|.+.| ++++++++++.+.+
T Consensus 430 ~~~H~~~N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 430 GVIHRLENPGKIPLELIEVQSGS 452 (468)
T ss_pred CCcEEEEcCCCCCEEEEEEEcCC
Confidence 99998865 68999999987643
No 36
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=3.8e-05 Score=67.20 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=71.6
Q ss_pred eecCCceEEEeCCCChhccccCeeEEEEEEcCCeeecCccc-CCCeEEEEEeceEEEEEEcCCCccchhhhhhccccccc
Q 048197 59 VESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYT-NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQS 137 (480)
Q Consensus 59 ~~se~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~-~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~ 137 (480)
+...-|.+.+.--..+-.-..|+-+.-+||.||+-.--|.| +-...+||+.|++.+-+ |.+=
T Consensus 24 ~~gkQGltyaagIa~etvGas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~---G~rL-------------- 86 (142)
T COG4101 24 FNGKQGLTYAAGIATETVGASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWY---GNRL-------------- 86 (142)
T ss_pred cccccchhhhhhhhhhhcccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeee---ccce--------------
Confidence 44555666544322233334467777789999998888887 57788999999998765 2210
Q ss_pred ccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEe
Q 048197 138 RSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALV 179 (480)
Q Consensus 138 ~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~ 179 (480)
+ .-..+++||.|+||+|++|-=+|..++++..|..-
T Consensus 87 ---E---~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaR 122 (142)
T COG4101 87 ---E---EHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIAR 122 (142)
T ss_pred ---e---eeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEc
Confidence 1 13589999999999999999999999999887553
No 37
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.96 E-value=3e-05 Score=71.05 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=65.6
Q ss_pred cccccceeEEeeeecccccc-ccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCC--cEEEEE-cCC
Q 048197 340 ILRYIQLSAEKGNLYQNAMM-APHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQG--FAVVKR-ASN 415 (480)
Q Consensus 340 ~L~~l~lsa~~v~L~pgam~-~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg--~~~~~~-ag~ 415 (480)
.|+ ++.+....|.||+-. .+|||..-+|++||++|++.+-+=+ |. ..|++||++-+|+| .+|..+ .++
T Consensus 38 Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~--~e----~~lrpGD~~gFpAG~~~aHhliN~s~ 109 (161)
T COG3837 38 GLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG--GE----TRLRPGDSAGFPAGVGNAHHLINRSD 109 (161)
T ss_pred Chh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEECC--ee----EEecCCceeeccCCCcceeEEeecCC
Confidence 445 478888999999987 6899999999999999998765432 22 25999999999999 677764 578
Q ss_pred CCeEEEEEEecCCC
Q 048197 416 RGLEWISFKTNDVA 429 (480)
Q Consensus 416 e~l~~v~f~ts~~~ 429 (480)
..+.++++.+....
T Consensus 110 ~~~~yL~vG~r~~~ 123 (161)
T COG3837 110 VILRYLEVGTREPD 123 (161)
T ss_pred ceEEEEEecccccc
Confidence 88999999876543
No 38
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=97.96 E-value=3.8e-05 Score=72.81 Aligned_cols=93 Identities=26% Similarity=0.270 Sum_probs=54.3
Q ss_pred hhccccCeeEEEEEEcCCee------ecCccc-C------CCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccc
Q 048197 74 EQLQCANVAVFRHRIQQRGL------VVPSYT-N------TPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQ 140 (480)
Q Consensus 74 ~~l~~~gvs~~r~~i~p~gl------~lPh~~-~------a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~ 140 (480)
+.|+..++...-.+|.||-+ .--||| . .+|+++|++|+|.+=+-.+...+. .
T Consensus 43 ~~~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~---------------~ 107 (182)
T PF06560_consen 43 EWLQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDV---------------G 107 (182)
T ss_dssp -------EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-------------------
T ss_pred ccceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcc---------------e
Confidence 44777778888888888865 234665 3 699999999999998865543110 0
Q ss_pred cccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeCCC
Q 048197 141 DQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGN 183 (480)
Q Consensus 141 d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~~n 183 (480)
| -.+..+++||+++||+|.+|-..|+|+++|++.++.+...
T Consensus 108 ~--~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~~~ 148 (182)
T PF06560_consen 108 D--VIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPRDA 148 (182)
T ss_dssp ---EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEETT-
T ss_pred e--EEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEecCC
Confidence 1 0157999999999999999999999999999998875443
No 39
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.89 E-value=0.0001 Score=61.54 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=55.8
Q ss_pred CeeEEEEEEcCCeeecCccc-CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 80 NVAVFRHRIQQRGLVVPSYT-NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~-~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
..+...+.|.|++.-.|..+ +...+.||++|...+.+- + ....+.+||+|.||
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~-----~---------------------~~f~v~~G~~F~VP 64 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIH-----E---------------------TSFVVTKGGSFQVP 64 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEET-----T---------------------EEEEEETT-EEEE-
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEc-----C---------------------cEEEEeCCCEEEEC
Confidence 57788999999999988887 578889999999999872 1 25789999999999
Q ss_pred CCCEEEEEcCCCCcEEEEE
Q 048197 159 TGSANWIYNDGPSELVVVA 177 (480)
Q Consensus 159 aG~~h~~~N~G~~~l~~v~ 177 (480)
+|-.+.|.|.++++..++.
T Consensus 65 ~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 65 RGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp TT-EEEEEE-SSS-EEEEE
T ss_pred CCCEEEEEECCCCcEEEEE
Confidence 9999999999999988764
No 40
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=97.82 E-value=0.00016 Score=68.41 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=58.6
Q ss_pred ceeEEeeeeccccccc-cccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc-CCCCeEEEE
Q 048197 345 QLSAEKGNLYQNAMMA-PHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA-SNRGLEWIS 422 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~-PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a-g~e~l~~v~ 422 (480)
.+.+..+.+.||+-.. +||| ...|++||++|++.+.+- ++ .+ .|++||.++||.+.+|...| ++++++++.
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h-~~~E~~~Vl~G~~~~~~~---~~-~~--~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~ 178 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKH-QGEEIGTVLEGEIVLTIN---GQ-DY--HLVAGQSYAINTGIPHSFSNTSAGICRIIS 178 (185)
T ss_pred eeEEEEEEccCCCCccccccc-CCcEEEEEEEeEEEEEEC---CE-EE--EecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence 3566677889999765 4555 569999999999998873 22 34 69999999999999998755 688899888
Q ss_pred EEe
Q 048197 423 FKT 425 (480)
Q Consensus 423 f~t 425 (480)
+.+
T Consensus 179 ~~~ 181 (185)
T PRK09943 179 AHT 181 (185)
T ss_pred EeC
Confidence 764
No 41
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.00012 Score=64.16 Aligned_cols=83 Identities=11% Similarity=0.163 Sum_probs=69.1
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEE-EcCCCCeEEEEE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVK-RASNRGLEWISF 423 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~-~ag~e~l~~v~f 423 (480)
+|-+-.|+|.|||=.--|.|-+-...+||+.|++++-.-+.= -+..++.+||+||||.|.+|-- +++++++..|..
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rL---E~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRL---EEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccce---eeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence 577888999999999999999989999999999998764432 2455799999999999999986 567899988877
Q ss_pred EecCCCc
Q 048197 424 KTNDVAK 430 (480)
Q Consensus 424 ~ts~~~~ 430 (480)
.+..++.
T Consensus 122 RsDp~~~ 128 (142)
T COG4101 122 RSDPNPQ 128 (142)
T ss_pred ccCCCCC
Confidence 7655554
No 42
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.77 E-value=0.00011 Score=79.49 Aligned_cols=77 Identities=10% Similarity=0.183 Sum_probs=67.0
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc-CCCCeEEEEE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA-SNRGLEWISF 423 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a-g~e~l~~v~f 423 (480)
++.+.+++|.||+=..+|+|....|..||++|++.+++=+. .+ .|.+||.++||.|.+|...| |++++++|++
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~----~~--~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD----IK--LLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE----EE--EecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 57889999999998888999888899999999999988552 33 69999999999999998865 7899999998
Q ss_pred EecC
Q 048197 424 KTND 427 (480)
Q Consensus 424 ~ts~ 427 (480)
.+.+
T Consensus 458 ~~g~ 461 (478)
T PRK15460 458 RSGS 461 (478)
T ss_pred EcCC
Confidence 7654
No 43
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.73 E-value=0.00027 Score=64.30 Aligned_cols=84 Identities=19% Similarity=0.291 Sum_probs=52.3
Q ss_pred CeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
.|.+-.-|+.||.-..+|-|...|+++|++|+|.+-+. +|.+.| .-..| .+.+-+++.|.||.
T Consensus 43 evEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~--~~~~~~--------------pG~pq-ef~~~pnSTf~IPv 105 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLA--SSHEKY--------------PGKPQ-EFPIFPNSTFHIPV 105 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE----SSSSS----------------S-E-EEEE-TTEEEEE-T
T ss_pred eeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEe--cccccC--------------CCCce-EEEecCCCeEEeCC
Confidence 46777789999999999999999999999999998876 332222 11111 47899999999999
Q ss_pred CCEEEEEcCC-CCcEEEEEEee
Q 048197 160 GSANWIYNDG-PSELVVVALVD 180 (480)
Q Consensus 160 G~~h~~~N~G-~~~l~~v~~~d 180 (480)
+.+|-+.|++ .++|.++.+++
T Consensus 106 n~~HQv~NT~e~eDlqvlViiS 127 (167)
T PF02041_consen 106 NDAHQVWNTNEHEDLQVLVIIS 127 (167)
T ss_dssp T--EEEE---SSS-EEEEEEEE
T ss_pred CCcceeecCCCCcceEEEEEec
Confidence 9999999998 48999887764
No 44
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.67 E-value=0.00021 Score=66.33 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=45.9
Q ss_pred eecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhccccccccccccccee-EeecCCcEEEeCCCCEEEEEcCCCC
Q 048197 93 LVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKV-RQIREGDLVALPTGSANWIYNDGPS 171 (480)
Q Consensus 93 l~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~-~~l~~GDV~~iPaG~~h~~~N~G~~ 171 (480)
+.-.|.|...|+-||+.|+|.+.+-.++. .+ + -.+++||+|+||+|+.||+.=+.+.
T Consensus 84 f~~EH~H~deEvR~i~~G~g~Fdvr~~~~--~w--------------------iri~~e~GDli~vP~g~~HrF~~~~~~ 141 (157)
T PF03079_consen 84 FFEEHTHEDEEVRYIVDGSGYFDVRDGDD--VW--------------------IRILCEKGDLIVVPAGTYHRFTLGESP 141 (157)
T ss_dssp HCS-EEESS-EEEEEEECEEEEEEE-TTC--EE--------------------EEEEEETTCEEEE-TT--EEEEESTTS
T ss_pred hheeEecChheEEEEeCcEEEEEEEcCCC--EE--------------------EEEEEcCCCEEecCCCCceeEEcCCCC
Confidence 44578889999999999999999975542 11 3 4899999999999999999755555
Q ss_pred cEEEEEEe
Q 048197 172 ELVVVALV 179 (480)
Q Consensus 172 ~l~~v~~~ 179 (480)
.+.++=+|
T Consensus 142 ~i~aiRlF 149 (157)
T PF03079_consen 142 YIKAIRLF 149 (157)
T ss_dssp SEEEEEEE
T ss_pred cEEEEEee
Confidence 66666554
No 45
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.66 E-value=0.00011 Score=68.00 Aligned_cols=51 Identities=16% Similarity=0.353 Sum_probs=41.6
Q ss_pred cccccC-CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc
Q 048197 361 PHWNLN-AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 361 PHwh~n-A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
.+||.+ +.||.|+++|+..+.+.+....+.+ .|++||+++||+|.+|.-.+
T Consensus 41 ~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v--~L~eGd~flvP~gvpHsP~r 92 (159)
T TIGR03037 41 TDFHDDPGEEFFYQLKGEMYLKVTEEGKREDV--PIREGDIFLLPPHVPHSPQR 92 (159)
T ss_pred cccccCCCceEEEEEcceEEEEEEcCCcEEEE--EECCCCEEEeCCCCCccccc
Confidence 456664 7899999999999999986433444 79999999999999987644
No 46
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.64 E-value=0.0008 Score=59.69 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=77.9
Q ss_pred cceecCCceEEEeCCCChhccccCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccc
Q 048197 57 QRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQ 136 (480)
Q Consensus 57 ~~~~se~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~ 136 (480)
+.+.++++....+--+++ ..|.|+..-+|.+|.-..-||-|-=|-+|+++|+|.+..+..|
T Consensus 14 r~V~~~~w~SrRlll~~D---gmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G---------------- 74 (126)
T PF06339_consen 14 RDVDAENWESRRLLLKDD---GMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTG---------------- 74 (126)
T ss_pred eeEEcCCceEEEEEEccC---CCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCC----------------
Confidence 457777555544432221 4588888899999999999999999999999999999987544
Q ss_pred cccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeC
Q 048197 137 SRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDV 181 (480)
Q Consensus 137 ~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~ 181 (480)
+++.+++|.++++-.--.|++.... ++.++|+|++
T Consensus 75 --------~~~~i~pGt~YaLd~hD~H~lra~~--dm~~vCVFnP 109 (126)
T PF06339_consen 75 --------EVHPIKPGTMYALDKHDRHYLRAKT--DMRLVCVFNP 109 (126)
T ss_pred --------cEEEcCCCeEEecCCCccEEEEecC--CEEEEEEcCC
Confidence 3689999999999999999998754 8999999964
No 47
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.62 E-value=0.00014 Score=68.33 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=48.7
Q ss_pred cCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcC
Q 048197 89 QQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYND 168 (480)
Q Consensus 89 ~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~ 168 (480)
-||.-.--|+++.+|++|+++|...+.++..|.. +...|++||+|++|+|++|.....
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~----------------------~~v~L~eGd~fllP~gvpHsP~r~ 99 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKR----------------------RDVPIREGEMFLLPPHVPHSPQRE 99 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcCCce----------------------eeEEECCCCEEEeCCCCCcCCccC
Confidence 4554444577789999999999999999875522 246999999999999999999875
Q ss_pred CCC
Q 048197 169 GPS 171 (480)
Q Consensus 169 G~~ 171 (480)
.++
T Consensus 100 ~~t 102 (177)
T PRK13264 100 AGS 102 (177)
T ss_pred CCe
Confidence 443
No 48
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.59 E-value=0.00037 Score=64.78 Aligned_cols=65 Identities=25% Similarity=0.441 Sum_probs=51.8
Q ss_pred ecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcE
Q 048197 94 VVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSEL 173 (480)
Q Consensus 94 ~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l 173 (480)
+-=|.|..+|+-|++.|.|++++..+.++. | .-.+.+||.+.||+|+-||+-=..+-.+
T Consensus 88 ~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~-~--------------------~i~c~~gDLI~vP~gi~HwFtlt~~~~f 146 (181)
T COG1791 88 LQEHLHTDDEVRYFVAGEGIFDVHSPDGKV-Y--------------------QIRCEKGDLISVPPGIYHWFTLTESPNF 146 (181)
T ss_pred HHHhccCCceEEEEEecceEEEEECCCCcE-E--------------------EEEEccCCEEecCCCceEEEEccCCCcE
Confidence 345668899999999999999999887643 1 3578889999999999999966555566
Q ss_pred EEEEEe
Q 048197 174 VVVALV 179 (480)
Q Consensus 174 ~~v~~~ 179 (480)
++|=+|
T Consensus 147 ~AvRlF 152 (181)
T COG1791 147 KAVRLF 152 (181)
T ss_pred EEEEEe
Confidence 666555
No 49
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.56 E-value=0.00021 Score=67.23 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=45.1
Q ss_pred ccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc
Q 048197 354 YQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 354 ~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
.||.=..-|+|+ +.|+.|+++|+..+.|++....+.+ .|++||+++||+|.+|.-.+
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~~v--~L~eGd~fllP~gvpHsP~r 98 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQEDGKRRDV--PIREGEMFLLPPHVPHSPQR 98 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEcCCceeeE--EECCCCEEEeCCCCCcCCcc
Confidence 355555668875 7999999999999999994321333 79999999999999987544
No 50
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.55 E-value=0.00041 Score=64.42 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=51.3
Q ss_pred ccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcC-CCCeEEEEEEec
Q 048197 356 NAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAS-NRGLEWISFKTN 426 (480)
Q Consensus 356 gam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag-~e~l~~v~f~ts 426 (480)
.-+...|.|.. .|+-|++.|+|...|-+.++..+ .-.+.+||+++||+|..|+...+ +..+..+-|+++
T Consensus 82 ~~f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~wi-ri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~ 151 (157)
T PF03079_consen 82 KKFFEEHTHED-EEVRYIVDGSGYFDVRDGDDVWI-RILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKD 151 (157)
T ss_dssp HHHCS-EEESS--EEEEEEECEEEEEEE-TTCEEE-EEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESS
T ss_pred hhhheeEecCh-heEEEEeCcEEEEEEEcCCCEEE-EEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecC
Confidence 34667899955 79999999999999999887754 22689999999999999998766 566888888764
No 51
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.51 E-value=0.00037 Score=60.25 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=45.7
Q ss_pred CCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCC
Q 048197 90 QRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDG 169 (480)
Q Consensus 90 p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G 169 (480)
++-...||||+.-++.||++|.|.+.+ .+ +...+++||++.+|+|.+|-++-++
T Consensus 12 ~~~~~~~h~h~~~~i~~v~~G~~~~~~--~~------------------------~~~~l~~g~~~li~p~~~H~~~~~~ 65 (136)
T PF02311_consen 12 PNFEFPPHWHDFYEIIYVLSGEGTLHI--DG------------------------QEYPLKPGDLFLIPPGQPHSYYPDS 65 (136)
T ss_dssp TT-SEEEETT-SEEEEEEEEE-EEEEE--TT------------------------EEEEE-TT-EEEE-TTS-EEEEE-T
T ss_pred CCCccCCEECCCEEEEEEeCCEEEEEE--CC------------------------EEEEEECCEEEEecCCccEEEecCC
Confidence 344567899999999999999999965 11 2589999999999999999999988
Q ss_pred CCcEEEEEEe
Q 048197 170 PSELVVVALV 179 (480)
Q Consensus 170 ~~~l~~v~~~ 179 (480)
+.++..+.+.
T Consensus 66 ~~~~~~~~i~ 75 (136)
T PF02311_consen 66 NEPWEYYWIY 75 (136)
T ss_dssp TSEEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 7777766653
No 52
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.44 E-value=0.00061 Score=63.20 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=44.0
Q ss_pred cccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcE
Q 048197 97 SYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSEL 173 (480)
Q Consensus 97 h~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l 173 (480)
|.+..+|++|+++|+..+-+...|.. |...|++||++++|+|++|...-.+++-.
T Consensus 44 H~~~tdE~FyqleG~~~l~v~d~g~~----------------------~~v~L~eGd~flvP~gvpHsP~r~~~t~~ 98 (159)
T TIGR03037 44 HDDPGEEFFYQLKGEMYLKVTEEGKR----------------------EDVPIREGDIFLLPPHVPHSPQRPAGSIG 98 (159)
T ss_pred ccCCCceEEEEEcceEEEEEEcCCcE----------------------EEEEECCCCEEEeCCCCCcccccCCCcEE
Confidence 44458999999999999988765421 25799999999999999999987655433
No 53
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.39 E-value=0.00082 Score=65.65 Aligned_cols=69 Identities=14% Similarity=0.306 Sum_probs=53.3
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcE-EEEEcCCCCeEEEEE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFA-VVKRASNRGLEWISF 423 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~-~~~~ag~e~l~~v~f 423 (480)
.|++....++... -+||.+-+|+.||++|+.++.+ +|+. + .+++||+++||.|-. ||... ....++.+
T Consensus 156 ~m~aGf~~~~~~s---f~wtl~~dEi~YVLEGe~~l~I---dG~t-~--~l~pGDvlfIPkGs~~hf~tp--~~aRflyV 224 (233)
T PRK15457 156 SMAAGFMQWENAF---FPWTLNYDEIDMVLEGELHVRH---EGET-M--IAKAGDVMFIPKGSSIEFGTP--SSVRFLYV 224 (233)
T ss_pred ceeeEEEEEecCc---cceeccceEEEEEEEeEEEEEE---CCEE-E--EeCCCcEEEECCCCeEEecCC--CCeeEEEE
Confidence 5889999998744 3499999999999999999999 3544 3 599999999999999 55222 35555544
Q ss_pred E
Q 048197 424 K 424 (480)
Q Consensus 424 ~ 424 (480)
.
T Consensus 225 ~ 225 (233)
T PRK15457 225 A 225 (233)
T ss_pred E
Confidence 3
No 54
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.32 E-value=0.001 Score=57.41 Aligned_cols=63 Identities=24% Similarity=0.545 Sum_probs=41.7
Q ss_pred cccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcC-CCCeEEEEEE
Q 048197 355 QNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAS-NRGLEWISFK 424 (480)
Q Consensus 355 pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag-~e~l~~v~f~ 424 (480)
++-.+.||||+ -.++.||++|++.+.+ + |+ .+ .+++||++++|+|.+|..... ++++++..+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~-~--~~-~~--~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI-D--GQ-EY--PLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE-T--TE-EE--EE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEE-C--CE-EE--EEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 55567899985 7899999999999844 2 22 34 699999999999999987664 4467755443
No 55
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.32 E-value=0.0031 Score=56.79 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=58.0
Q ss_pred CCCeEEEEEecCCCCcccccceeEEeee-eccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCc-cEEE
Q 048197 325 PRGGRVTTVNRFNLPILRYIQLSAEKGN-LYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREG-QLIV 402 (480)
Q Consensus 325 ~~~G~i~~~~~~~~P~L~~l~lsa~~v~-L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~G-dV~v 402 (480)
...|.+..+...+-....- -.+..+. ..+|..+.-|+|...+++++|++|+..+.+-+..+...| .|..- +.++
T Consensus 13 D~RG~L~~~e~~~~ipf~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~--~L~~~~~~L~ 88 (131)
T PF05523_consen 13 DERGSLSVIERFDDIPFEI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEF--ILDEPNKGLY 88 (131)
T ss_dssp ETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEE--EE--TTEEEE
T ss_pred CCCCcEEEEeccCCCCCCc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEE--EECCCCeEEE
Confidence 3588999888764222221 2344443 445555999999999999999999999998887665555 35433 6999
Q ss_pred ECCCcEEEEEcCCCCeEEEEEEe
Q 048197 403 VPQGFAVVKRASNRGLEWISFKT 425 (480)
Q Consensus 403 VPqg~~~~~~ag~e~l~~v~f~t 425 (480)
||+|++|.+.+-++++.++.+.+
T Consensus 89 Ippg~w~~~~~~s~~svlLv~as 111 (131)
T PF05523_consen 89 IPPGVWHGIKNFSEDSVLLVLAS 111 (131)
T ss_dssp E-TT-EEEEE---TT-EEEEEES
T ss_pred ECCchhhHhhccCCCcEEEEEcC
Confidence 99999999877666677777654
No 56
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.30 E-value=0.00061 Score=61.19 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=40.0
Q ss_pred ecCccc-CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEE
Q 048197 94 VVPSYT-NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANW 164 (480)
Q Consensus 94 ~lPh~~-~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~ 164 (480)
.-+||| +|.|++-|++|++.+-+--+++++ -.|.+|||++||||+-|-
T Consensus 56 ~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~e-----------------------l~v~~GDvlliPAGvGH~ 104 (163)
T COG4297 56 NYHHYHSGAHEVLGVLRGQAGLQIGGADGQE-----------------------LEVGEGDVLLIPAGVGHC 104 (163)
T ss_pred ccccccCCcceEEEEecceeEEEecCCCCce-----------------------eeecCCCEEEEecCcccc
Confidence 356676 699999999999999886665543 589999999999999984
No 57
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.28 E-value=0.0021 Score=62.85 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=52.0
Q ss_pred cCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 79 ANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 79 ~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
..+++..+.++...+ |.+.+..|+.||++|+..+.+ +. +.+.+++||+++||
T Consensus 155 s~m~aGf~~~~~~sf--~wtl~~dEi~YVLEGe~~l~I---dG-----------------------~t~~l~pGDvlfIP 206 (233)
T PRK15457 155 SSMAAGFMQWENAFF--PWTLNYDEIDMVLEGELHVRH---EG-----------------------ETMIAKAGDVMFIP 206 (233)
T ss_pred CceeeEEEEEecCcc--ceeccceEEEEEEEeEEEEEE---CC-----------------------EEEEeCCCcEEEEC
Confidence 457777888886543 555689999999999999987 22 25799999999999
Q ss_pred CCCE-EEEEcCCCCcEEEEEEe
Q 048197 159 TGSA-NWIYNDGPSELVVVALV 179 (480)
Q Consensus 159 aG~~-h~~~N~G~~~l~~v~~~ 179 (480)
+|.. || .+.+ ...++++.
T Consensus 207 kGs~~hf-~tp~--~aRflyV~ 225 (233)
T PRK15457 207 KGSSIEF-GTPS--SVRFLYVA 225 (233)
T ss_pred CCCeEEe-cCCC--CeeEEEEE
Confidence 9999 66 4433 44444444
No 58
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.02 E-value=0.0024 Score=62.23 Aligned_cols=72 Identities=15% Similarity=0.037 Sum_probs=61.0
Q ss_pred CeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
+..+.-+.|.||+-+..|.|...|+.+|++|.-. +. ...+.+||++.+|+
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~----de--------------------------~g~y~~Gd~i~~p~ 175 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS----DE--------------------------TGVYGVGDFEEADG 175 (215)
T ss_pred CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE----cC--------------------------CCccCCCeEEECCC
Confidence 3566778999999999998999999999999931 11 14789999999999
Q ss_pred CCEEEEEcCCCCcEEEEEEeeC
Q 048197 160 GSANWIYNDGPSELVVVALVDV 181 (480)
Q Consensus 160 G~~h~~~N~G~~~l~~v~~~d~ 181 (480)
|..|-..+.++++++.++++|-
T Consensus 176 ~~~H~p~a~~~~~Cicl~v~da 197 (215)
T TIGR02451 176 SVQHQPRTVSGGDCLCLAVLDA 197 (215)
T ss_pred CCCcCcccCCCCCeEEEEEecC
Confidence 9999999999999999988764
No 59
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=96.98 E-value=0.0027 Score=53.04 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=51.7
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc-CCCCeEE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA-SNRGLEW 420 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a-g~e~l~~ 420 (480)
-+++..+.|.|++.-.|--.-+.+-+.||++|...|+|-. ..| .+.+||+|.||+|-.+.+.| +++...+
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~----~~f--~v~~G~~F~VP~gN~Y~i~N~~~~~a~L 81 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHE----TSF--VVTKGGSFQVPRGNYYSIKNIGNEEAKL 81 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETT----EEE--EEETT-EEEE-TT-EEEEEE-SSS-EEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcC----cEE--EEeCCCEEEECCCCEEEEEECCCCcEEE
Confidence 3789999999999999888778899999999999999844 234 59999999999999988755 6665554
No 60
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=96.98 E-value=0.0028 Score=53.01 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=47.9
Q ss_pred CeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
|..+..+.++||+.+..|.|...+.+||++|+...+ -.++.+||.+..|+
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~------------------------------~~~~~~G~~~~~p~ 72 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPGGEEILVLEGELSDG------------------------------DGRYGAGDWLRLPP 72 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEET------------------------------TCEEETTEEEEE-T
T ss_pred cCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEEC------------------------------CccCCCCeEEEeCC
Confidence 667888899999999999999999999999998753 13679999999999
Q ss_pred CCEEEEEc
Q 048197 160 GSANWIYN 167 (480)
Q Consensus 160 G~~h~~~N 167 (480)
|..|-..-
T Consensus 73 g~~h~~~s 80 (91)
T PF12973_consen 73 GSSHTPRS 80 (91)
T ss_dssp TEEEEEEE
T ss_pred CCccccCc
Confidence 99999985
No 61
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=96.77 E-value=0.013 Score=53.53 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=64.4
Q ss_pred cccCCCCCCCCCcccCCC-eEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCc
Q 048197 310 LKHNINDPSGADAYNPRG-GRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGE 388 (480)
Q Consensus 310 l~~ni~~p~~~~~~~~~~-G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~ 388 (480)
+..||.+. ..|-|...| -.++.+-+ -+-.++. +.+-+-++.||.-..+|=| ...|+.||++|+|...+..+.++
T Consensus 11 ~Vr~isel-pq~~ygr~GLsH~TvAGa-~~hGmke--vEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~ 85 (167)
T PF02041_consen 11 LVRNISEL-PQDNYGRPGLSHITVAGA-LLHGMKE--VEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEK 85 (167)
T ss_dssp SEEEGGGS---B-TT-TTEEEEEEE-H-HHH--SS--EEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSS
T ss_pred eeEEhhhC-ccccccCCCcceEEeehh-hhcCcee--eeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEeccccc
Confidence 44566543 223343323 23344332 2234554 6888889999999999999 56799999999999999977532
Q ss_pred ---eEEeeecCCccEEEECCCcEEEEEcCC--CCeEEEEEEecCCCcceeec
Q 048197 389 ---NVFDGQIREGQLIVVPQGFAVVKRASN--RGLEWISFKTNDVAKTSQLA 435 (480)
Q Consensus 389 ---~~f~~~l~~GdV~vVPqg~~~~~~ag~--e~l~~v~f~ts~~~~~~~LA 435 (480)
..-...+-+++.|+||.+-+|-..|++ +++.++.+. +.-|.+.|+.
T Consensus 86 ~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlVii-SrpPvkvf~y 136 (167)
T PF02041_consen 86 YPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVII-SRPPVKVFIY 136 (167)
T ss_dssp S--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEE-ESSS--EEEE
T ss_pred CCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEe-cCCCeEEEEe
Confidence 111236889999999999999886654 789988875 3566666664
No 62
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.75 E-value=0.0028 Score=51.33 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=40.7
Q ss_pred eeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEE
Q 048197 346 LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVV 410 (480)
Q Consensus 346 lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~ 410 (480)
+++..-.-+||.+. -+| ..+|++||++|++.++. .+|... ++++||++++|+|+...
T Consensus 7 ~~~g~w~~~pg~~~-~~~--~~~E~~~vleG~v~it~--~~G~~~---~~~aGD~~~~p~G~~~~ 63 (74)
T PF05899_consen 7 FSAGVWECTPGKFP-WPY--PEDEFFYVLEGEVTITD--EDGETV---TFKAGDAFFLPKGWTGT 63 (74)
T ss_dssp EEEEEEEEECEEEE-EEE--SSEEEEEEEEEEEEEEE--TTTEEE---EEETTEEEEE-TTEEEE
T ss_pred EEEEEEEECCceeE-eeC--CCCEEEEEEEeEEEEEE--CCCCEE---EEcCCcEEEECCCCEEE
Confidence 44555566776643 234 45999999999988774 467653 69999999999999744
No 63
>PRK13501 transcriptional activator RhaR; Provisional
Probab=96.74 E-value=0.0044 Score=62.26 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=46.6
Q ss_pred cCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcC
Q 048197 89 QQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYND 168 (480)
Q Consensus 89 ~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~ 168 (480)
.+..-..||||+.-+++||++|+|.+.+ .| +...+.+||+++||+|.+|++...
T Consensus 26 ~~~~~~~~H~H~~~ei~~i~~G~~~~~i--~~------------------------~~~~l~~g~~~~I~p~~~H~~~~~ 79 (290)
T PRK13501 26 YPQETFVEHTHQFCEIVIVWRGNGLHVL--ND------------------------HPYRITCGDVFYIQAADHHSYESV 79 (290)
T ss_pred CCCCCCccccccceeEEEEecCceEEEE--CC------------------------eeeeecCCeEEEEcCCCccccccc
Confidence 3333456999999999999999999986 22 257999999999999999998765
Q ss_pred CCCc
Q 048197 169 GPSE 172 (480)
Q Consensus 169 G~~~ 172 (480)
++..
T Consensus 80 ~~~~ 83 (290)
T PRK13501 80 HDLV 83 (290)
T ss_pred CCeE
Confidence 5433
No 64
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=96.72 E-value=0.0049 Score=62.75 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=49.6
Q ss_pred EEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEE
Q 048197 86 HRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWI 165 (480)
Q Consensus 86 ~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~ 165 (480)
....|..+..+|||+.-|++||++|.+.+-+ .| +...+.+||+++|++|.+|-+
T Consensus 31 ~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~~i--~g------------------------~~~~l~~Gd~ili~s~~~H~~ 84 (302)
T PRK10371 31 EFRPPHIMPTSHWHGQVEVNVPFDGDVEYLI--NN------------------------EKVQINQGHITLFWACTPHQL 84 (302)
T ss_pred EeeCCCCCCCCCccccEEEEEecCCcEEEEE--CC------------------------EEEEEcCCcEEEEecCCcccc
Confidence 3556677888999999999999999987665 22 257999999999999999988
Q ss_pred EcCCCCc
Q 048197 166 YNDGPSE 172 (480)
Q Consensus 166 ~N~G~~~ 172 (480)
...++..
T Consensus 85 ~~~~~~~ 91 (302)
T PRK10371 85 TDPGNCR 91 (302)
T ss_pred cccCCCc
Confidence 7666544
No 65
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=96.70 E-value=0.0051 Score=51.45 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=49.1
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEW 420 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~ 420 (480)
+..+..+++.||+.+..|+|+. .|.+||++|+.. +.+| .+.+||.++.|.|..|...+ ++++.+
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~----d~~~------~~~~G~~~~~p~g~~h~~~s-~~gc~~ 86 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPG-GEEILVLEGELS----DGDG------RYGAGDWLRLPPGSSHTPRS-DEGCLI 86 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEE----ETTC------EEETTEEEEE-TTEEEEEEE-SSCEEE
T ss_pred cCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEE----ECCc------cCCCCeEEEeCCCCccccCc-CCCEEE
Confidence 5688899999999999999955 577799999876 3332 46899999999999998875 556544
No 66
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.65 E-value=0.011 Score=55.18 Aligned_cols=65 Identities=20% Similarity=0.367 Sum_probs=53.4
Q ss_pred ccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcC-CCCeEEEEEEec
Q 048197 360 APHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAS-NRGLEWISFKTN 426 (480)
Q Consensus 360 ~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag-~e~l~~v~f~ts 426 (480)
.=|.| .+.|+-|++.|.|...|..++|.. +.=.+.+||++.||.|--||.--+ +..++-|-+++.
T Consensus 89 ~EH~H-~d~EvRy~vaG~GiF~v~~~d~~~-~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~ 154 (181)
T COG1791 89 QEHLH-TDDEVRYFVAGEGIFDVHSPDGKV-YQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTE 154 (181)
T ss_pred HHhcc-CCceEEEEEecceEEEEECCCCcE-EEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeC
Confidence 44777 578999999999999999999874 444688999999999999998554 666888877764
No 67
>PRK13500 transcriptional activator RhaR; Provisional
Probab=96.65 E-value=0.0065 Score=62.05 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=46.6
Q ss_pred CCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCC
Q 048197 90 QRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDG 169 (480)
Q Consensus 90 p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G 169 (480)
|.....+|||+.-+++||++|.|.+.+ .| +...+++||+++||+|..|.+....
T Consensus 57 ~~~~~~~H~H~~~el~~v~~G~g~~~v--~~------------------------~~~~l~~Gdl~~I~~~~~H~~~~~~ 110 (312)
T PRK13500 57 PQDVFAEHTHDFCELVIVWRGNGLHVL--ND------------------------RPYRITRGDLFYIHADDKHSYASVN 110 (312)
T ss_pred CCCCCCccccceEEEEEEEcCeEEEEE--CC------------------------EEEeecCCeEEEECCCCeecccccC
Confidence 444567999999999999999999765 22 1479999999999999999987655
Q ss_pred CCcE
Q 048197 170 PSEL 173 (480)
Q Consensus 170 ~~~l 173 (480)
+..+
T Consensus 111 ~~~~ 114 (312)
T PRK13500 111 DLVL 114 (312)
T ss_pred CceE
Confidence 5333
No 68
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=96.61 E-value=0.015 Score=51.80 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=68.7
Q ss_pred ccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEE
Q 048197 343 YIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWIS 422 (480)
Q Consensus 343 ~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~ 422 (480)
.+|.|+-...|++|.=...|| .|==|-+||++|+|++..++. |+ ++ .+++|.+++.-+.=.|+..|.. ++..+|
T Consensus 32 gmGFS~h~T~i~aGtet~~~Y-knHlEAvyci~G~Gev~~~~~-G~-~~--~i~pGt~YaLd~hD~H~lra~~-dm~~vC 105 (126)
T PF06339_consen 32 GMGFSFHETTIYAGTETHIHY-KNHLEAVYCIEGEGEVEDLDT-GE-VH--PIKPGTMYALDKHDRHYLRAKT-DMRLVC 105 (126)
T ss_pred CCCEEEEEEEEeCCCeeEEEe-cCceEEEEEEeceEEEEEccC-Cc-EE--EcCCCeEEecCCCccEEEEecC-CEEEEE
Confidence 478999999999999999999 677799999999999999874 44 34 7999999999999999999877 899999
Q ss_pred EEec
Q 048197 423 FKTN 426 (480)
Q Consensus 423 f~ts 426 (480)
+|+-
T Consensus 106 VFnP 109 (126)
T PF06339_consen 106 VFNP 109 (126)
T ss_pred EcCC
Confidence 8864
No 69
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=96.60 E-value=0.0078 Score=62.40 Aligned_cols=74 Identities=18% Similarity=0.305 Sum_probs=61.6
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc-CCCCeEEEEE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA-SNRGLEWISF 423 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a-g~e~l~~v~f 423 (480)
.|.+..-.|.||....||=| ++..+-||++|+|-.++|+ |++ + .+++||+|++|.+..|--.| +++.+.|+.+
T Consensus 80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~--g~~-~--~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~ 153 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVD--GER-T--TMHPGDFIITPSWTWHDHGNPGDEPMIWLDG 153 (335)
T ss_pred hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEEC--CEE-E--eeeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence 57888889999999999998 6679999999999777776 444 4 59999999999999988644 6778888666
Q ss_pred E
Q 048197 424 K 424 (480)
Q Consensus 424 ~ 424 (480)
.
T Consensus 154 l 154 (335)
T TIGR02272 154 L 154 (335)
T ss_pred C
Confidence 4
No 70
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.54 E-value=0.0062 Score=60.66 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=39.8
Q ss_pred ccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEE
Q 048197 358 MMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKR 412 (480)
Q Consensus 358 m~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ 412 (480)
...|||| +..|+.||++|++.+.| +|+. + .+.+||+++||+|..|...
T Consensus 35 ~~~~H~H-~~~ei~~v~~G~~~~~i---~~~~-~--~l~~g~l~~i~p~~~H~~~ 82 (278)
T PRK10296 35 VSGLHQH-DYYEFTLVLTGRYYQEI---NGKR-V--LLERGDFVFIPLGSHHQSF 82 (278)
T ss_pred CCCCccc-ccEEEEEEEeceEEEEE---CCEE-E--EECCCcEEEeCCCCcccee
Confidence 4579999 68899999999999777 3443 3 6999999999999999653
No 71
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=96.53 E-value=0.012 Score=47.63 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=41.3
Q ss_pred eeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCC
Q 048197 81 VAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTG 160 (480)
Q Consensus 81 vs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG 160 (480)
+++..-..+||.+..+ | ...|++||++|++.+..- ++ ...+|++||++++|+|
T Consensus 7 ~~~g~w~~~pg~~~~~-~-~~~E~~~vleG~v~it~~--~G-----------------------~~~~~~aGD~~~~p~G 59 (74)
T PF05899_consen 7 FSAGVWECTPGKFPWP-Y-PEDEFFYVLEGEVTITDE--DG-----------------------ETVTFKAGDAFFLPKG 59 (74)
T ss_dssp EEEEEEEEECEEEEEE-E-SSEEEEEEEEEEEEEEET--TT-----------------------EEEEEETTEEEEE-TT
T ss_pred EEEEEEEECCceeEee-C-CCCEEEEEEEeEEEEEEC--CC-----------------------CEEEEcCCcEEEECCC
Confidence 3445556788775433 3 349999999999999852 22 1479999999999999
Q ss_pred CEEEE
Q 048197 161 SANWI 165 (480)
Q Consensus 161 ~~h~~ 165 (480)
...-+
T Consensus 60 ~~~~w 64 (74)
T PF05899_consen 60 WTGTW 64 (74)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 85443
No 72
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.51 E-value=0.0087 Score=59.61 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=42.1
Q ss_pred eecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcC
Q 048197 93 LVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYND 168 (480)
Q Consensus 93 l~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~ 168 (480)
...||||+..+++||++|.+.+.+ .| +...+.+||+++||+|..|..+..
T Consensus 35 ~~~~H~H~~~ei~~v~~G~~~~~i--~~------------------------~~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 35 VSGLHQHDYYEFTLVLTGRYYQEI--NG------------------------KRVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred CCCCcccccEEEEEEEeceEEEEE--CC------------------------EEEEECCCcEEEeCCCCccceeee
Confidence 457999999999999999999876 22 247999999999999999976554
No 73
>PRK13503 transcriptional activator RhaS; Provisional
Probab=96.50 E-value=0.0058 Score=60.57 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=45.5
Q ss_pred cCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcC
Q 048197 89 QQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYND 168 (480)
Q Consensus 89 ~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~ 168 (480)
.+.....+|||+..+++||++|.+.+.+ .+ +...+++||+++||+|..|.+.+.
T Consensus 23 ~~~~~~~~H~H~~~ei~~v~~G~~~~~i--~~------------------------~~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 23 LPQAAFPEHHHDFHEIVIVEHGTGIHVF--NG------------------------QPYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred CccccccccccCceeEEEEecCceeeEe--cC------------------------CcccccCCcEEEECCCccchhhhc
Confidence 4455567899999999999999999876 12 146999999999999999987665
Q ss_pred CC
Q 048197 169 GP 170 (480)
Q Consensus 169 G~ 170 (480)
.+
T Consensus 77 ~~ 78 (278)
T PRK13503 77 DN 78 (278)
T ss_pred cC
Confidence 43
No 74
>PRK13501 transcriptional activator RhaR; Provisional
Probab=96.37 E-value=0.0095 Score=59.84 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=40.7
Q ss_pred ccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc
Q 048197 358 MMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 358 m~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
-..|||| +-.|++||++|++.+.| +|. .+ .+.+||+++||.|.+|....
T Consensus 30 ~~~~H~H-~~~ei~~i~~G~~~~~i---~~~-~~--~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 30 TFVEHTH-QFCEIVIVWRGNGLHVL---NDH-PY--RITCGDVFYIQAADHHSYES 78 (290)
T ss_pred CCccccc-cceeEEEEecCceEEEE---CCe-ee--eecCCeEEEEcCCCcccccc
Confidence 3569999 68899999999999886 333 33 69999999999999998654
No 75
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=96.34 E-value=0.0092 Score=60.76 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=44.5
Q ss_pred eeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc
Q 048197 351 GNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 351 v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
..-.+..|..+||| +--|+.|+++|.+.+.+ +|+. + .+.+||+++||.+-+|....
T Consensus 31 ~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g~~-~--~l~~Gd~ili~s~~~H~~~~ 86 (302)
T PRK10371 31 EFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NNEK-V--QINQGHITLFWACTPHQLTD 86 (302)
T ss_pred EeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CCEE-E--EEcCCcEEEEecCCcccccc
Confidence 45567788899999 66799999999987655 2333 3 59999999999999997644
No 76
>PRK13500 transcriptional activator RhaR; Provisional
Probab=96.30 E-value=0.011 Score=60.23 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=43.0
Q ss_pred ccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCC
Q 048197 354 YQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASN 415 (480)
Q Consensus 354 ~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~ 415 (480)
.|.....|||| +..|++||++|+|.+.+=+ + .+ .+.+||+++||.+-+|.....+
T Consensus 56 ~~~~~~~~H~H-~~~el~~v~~G~g~~~v~~---~-~~--~l~~Gdl~~I~~~~~H~~~~~~ 110 (312)
T PRK13500 56 YPQDVFAEHTH-DFCELVIVWRGNGLHVLND---R-PY--RITRGDLFYIHADDKHSYASVN 110 (312)
T ss_pred CCCCCCCcccc-ceEEEEEEEcCeEEEEECC---E-EE--eecCCeEEEECCCCeecccccC
Confidence 34445689999 4899999999999965533 2 23 6999999999999999865543
No 77
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.26 E-value=0.018 Score=53.19 Aligned_cols=69 Identities=20% Similarity=0.392 Sum_probs=47.4
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f 423 (480)
.|++....|+.. ..-|..+-+|+-||++|+..+. + +|+.+ ..++|||++||.|.-+..-.. +..+++.+
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~--~-~G~~~---~A~~GDvi~iPkGs~I~fst~-~~a~~~Yv 144 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEIS--I-DGQTV---TAKPGDVIFIPKGSTITFSTP-DYARFFYV 144 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEE--E-TTEEE---EEETT-EEEE-TT-EEEEEEE-EEEEEEEE
T ss_pred ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEE--E-CCEEE---EEcCCcEEEECCCCEEEEecC-CCEEEEEE
Confidence 488999999984 4579999999999999976655 3 36654 478999999999987665332 23444433
No 78
>PRK13502 transcriptional activator RhaR; Provisional
Probab=96.17 E-value=0.019 Score=57.27 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=44.0
Q ss_pred eccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCC
Q 048197 353 LYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASN 415 (480)
Q Consensus 353 L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~ 415 (480)
.+|+-...+||| +..+++||++|++.+.+- |+ .+ .+++||+++||.+-+|.....+
T Consensus 25 ~~~~~~~~~H~h-~~~~l~~v~~G~~~~~i~---~~-~~--~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 25 RYPQDVFAEHTH-EFCELVMVWRGNGLHVLN---ER-PY--RITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCCCcccc-ceEEEEEEecCcEEEEEC---CE-EE--eecCCcEEEECCCCcccccccC
Confidence 345445789999 588999999999998862 33 23 6999999999999999875543
No 79
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.12 E-value=0.011 Score=54.15 Aligned_cols=51 Identities=27% Similarity=0.318 Sum_probs=35.3
Q ss_pred ccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCC
Q 048197 98 YTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGP 170 (480)
Q Consensus 98 ~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~ 170 (480)
+...+|++|-++|...+.++..|.. |.-.+++||+|.+|++++|.=.=-.+
T Consensus 50 ine~eE~FyQ~kG~m~Lkv~e~g~~----------------------kdi~I~EGe~fLLP~~vpHsP~R~~~ 100 (151)
T PF06052_consen 50 INETEEFFYQLKGDMCLKVVEDGKF----------------------KDIPIREGEMFLLPANVPHSPQRPAD 100 (151)
T ss_dssp E-SS-EEEEEEES-EEEEEEETTEE----------------------EEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred cCCcceEEEEEeCcEEEEEEeCCce----------------------EEEEeCCCcEEecCCCCCCCCcCCCC
Confidence 3458999999999999999976632 34699999999999999998765443
No 80
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.06 E-value=0.015 Score=57.93 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=42.4
Q ss_pred cccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc
Q 048197 355 QNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 355 pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
-+....||||.+-.+++|+++|.+.+.+- |+ .+ .+.+||+++||++.+|....
T Consensus 32 ~~~~~~~H~H~~~~~l~~~~~G~~~~~~~---~~-~~--~l~~g~~~ii~~~~~H~~~~ 84 (287)
T TIGR02297 32 FGRNMPVHFHDRYYQLHYLTEGSIALQLD---EH-EY--SEYAPCFFLTPPSVPHGFVT 84 (287)
T ss_pred cCCCCCCcccccceeEEEEeeCceEEEEC---CE-EE--EecCCeEEEeCCCCcccccc
Confidence 34568899996678999999999986652 33 33 69999999999999998754
No 81
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.02 E-value=0.015 Score=57.99 Aligned_cols=63 Identities=10% Similarity=-0.012 Sum_probs=48.6
Q ss_pred cCCeeecCcccC-CCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEc
Q 048197 89 QQRGLVVPSYTN-TPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYN 167 (480)
Q Consensus 89 ~p~gl~lPh~~~-a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N 167 (480)
.-+....||||+ .-+++||++|.+.+.+ .| +...+++||++++|+|.+|.+..
T Consensus 31 ~~~~~~~~H~H~~~~~l~~~~~G~~~~~~--~~------------------------~~~~l~~g~~~ii~~~~~H~~~~ 84 (287)
T TIGR02297 31 FFGRNMPVHFHDRYYQLHYLTEGSIALQL--DE------------------------HEYSEYAPCFFLTPPSVPHGFVT 84 (287)
T ss_pred ccCCCCCCcccccceeEEEEeeCceEEEE--CC------------------------EEEEecCCeEEEeCCCCcccccc
Confidence 334567899998 6999999999998765 22 24799999999999999999877
Q ss_pred CCCCcEEEEE
Q 048197 168 DGPSELVVVA 177 (480)
Q Consensus 168 ~G~~~l~~v~ 177 (480)
+.+....++.
T Consensus 85 ~~~~~~~~i~ 94 (287)
T TIGR02297 85 DLDADGHVLT 94 (287)
T ss_pred CCCcceEEEE
Confidence 6554433333
No 82
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.00 E-value=0.039 Score=52.27 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=53.4
Q ss_pred ccccccccccccCC---ceEEEEEEeeEEEEEEecC------CceEEeeecCCc--cEEEECCCcEEEEEcCCCCeEEEE
Q 048197 354 YQNAMMAPHWNLNA---HSVVYITRGNGRMQIVAEN------GENVFDGQIREG--QLIVVPQGFAVVKRASNRGLEWIS 422 (480)
Q Consensus 354 ~pgam~~PHwh~nA---~ei~yV~~G~grv~vv~~~------G~~~f~~~l~~G--dV~vVPqg~~~~~~ag~e~l~~v~ 422 (480)
.+|-++.+|+|..- .++++|++|+...-+||-. |+ .....|.++ ..++||+|++|-..+-.++..++.
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~-~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y 129 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGK-WVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLY 129 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT--EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCE-EEEEEeCccccCEEEeCCcceeeEEeccCceEEEE
Confidence 45999999999886 7999999999999999853 33 233467555 489999999999888666666666
Q ss_pred EEec
Q 048197 423 FKTN 426 (480)
Q Consensus 423 f~ts 426 (480)
..++
T Consensus 130 ~~t~ 133 (176)
T PF00908_consen 130 KVTN 133 (176)
T ss_dssp EESS
T ss_pred ecCC
Confidence 5544
No 83
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=95.97 E-value=0.077 Score=50.27 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=55.0
Q ss_pred ccccccccccccC--CceEEEEEEeeEEEEEEecCCc-----eEEeeecCC--ccEEEECCCcEEEEEcCCCCeEEEEEE
Q 048197 354 YQNAMMAPHWNLN--AHSVVYITRGNGRMQIVAENGE-----NVFDGQIRE--GQLIVVPQGFAVVKRASNRGLEWISFK 424 (480)
Q Consensus 354 ~pgam~~PHwh~n--A~ei~yV~~G~grv~vv~~~G~-----~~f~~~l~~--GdV~vVPqg~~~~~~ag~e~l~~v~f~ 424 (480)
.+|.++..|+|.. -.++++|++|+...-+||..-. +....+|.+ +..++||.|++|-..+-.++..++-+.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 6799999999954 5799999999999999997421 122235655 779999999999988754556665554
Q ss_pred ec
Q 048197 425 TN 426 (480)
Q Consensus 425 ts 426 (480)
+.
T Consensus 132 ~~ 133 (176)
T TIGR01221 132 TD 133 (176)
T ss_pred CC
Confidence 44
No 84
>PRK13502 transcriptional activator RhaR; Provisional
Probab=95.95 E-value=0.025 Score=56.36 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=45.2
Q ss_pred cCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcC
Q 048197 89 QQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYND 168 (480)
Q Consensus 89 ~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~ 168 (480)
.|+-...+|||+.-+++||.+|+|.+.+- | +...+++||+++||+|.+|.+...
T Consensus 26 ~~~~~~~~H~h~~~~l~~v~~G~~~~~i~--~------------------------~~~~l~~g~l~li~~~~~H~~~~~ 79 (282)
T PRK13502 26 YPQDVFAEHTHEFCELVMVWRGNGLHVLN--E------------------------RPYRITRGDLFYIRAEDKHSYTSV 79 (282)
T ss_pred CCCCCCCccccceEEEEEEecCcEEEEEC--C------------------------EEEeecCCcEEEECCCCccccccc
Confidence 34334578999999999999999998761 1 257999999999999999988654
Q ss_pred CC
Q 048197 169 GP 170 (480)
Q Consensus 169 G~ 170 (480)
++
T Consensus 80 ~~ 81 (282)
T PRK13502 80 ND 81 (282)
T ss_pred CC
Confidence 44
No 85
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=95.92 E-value=0.027 Score=54.89 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=57.0
Q ss_pred eeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcC-CCCeEEEEEE
Q 048197 346 LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAS-NRGLEWISFK 424 (480)
Q Consensus 346 lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag-~e~l~~v~f~ 424 (480)
..+..+++.||+-+..|.| ...|+.+|++|.- .+.. ..+.+||++..|.+..|...+. ++++..+++.
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f----~de~------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAF----SDET------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL 195 (215)
T ss_pred cEEEEEEECCCCccCCCcC-CCcEEEEEEEEEE----EcCC------CccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence 5778999999999999999 6668999999993 2433 2588999999999999998775 5678888776
Q ss_pred e
Q 048197 425 T 425 (480)
Q Consensus 425 t 425 (480)
+
T Consensus 196 d 196 (215)
T TIGR02451 196 D 196 (215)
T ss_pred c
Confidence 3
No 86
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=95.87 E-value=0.19 Score=53.38 Aligned_cols=44 Identities=7% Similarity=0.265 Sum_probs=33.6
Q ss_pred CCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCC
Q 048197 366 NAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASN 415 (480)
Q Consensus 366 nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~ 415 (480)
....|++|++|++.+. + +|.. + .|++|++++||++...+...++
T Consensus 338 ~~~~Illv~~G~~~i~--~-~~~~-~--~l~~G~~~fipa~~~~~~~~g~ 381 (389)
T PRK15131 338 QSAAILFCVEGEAVLW--K-GEQQ-L--TLKPGESAFIAANESPVTVSGH 381 (389)
T ss_pred CCcEEEEEEcceEEEE--e-CCeE-E--EECCCCEEEEeCCCccEEEecc
Confidence 5669999999999874 2 3333 3 5999999999999876665554
No 87
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=95.73 E-value=0.12 Score=48.77 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=57.8
Q ss_pred ceeEEeeeeccccccccccccCC-ceEEEEEEeeEEEEEEecCC-c----eEEeeecCC--ccEEEECCCcEEEEEcCCC
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNA-HSVVYITRGNGRMQIVAENG-E----NVFDGQIRE--GQLIVVPQGFAVVKRASNR 416 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA-~ei~yV~~G~grv~vv~~~G-~----~~f~~~l~~--GdV~vVPqg~~~~~~ag~e 416 (480)
++|.++ +|-++..|||..- .+++.|++|++..-.||-.- + ......+.+ ..++.||.||+|=..+.++
T Consensus 48 n~S~S~----~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d 123 (173)
T COG1898 48 NHSFSY----PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSD 123 (173)
T ss_pred eEEEec----CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccC
Confidence 455554 9999999999998 99999999999999998742 2 112224544 4899999999999888655
Q ss_pred CeEEEEEEe
Q 048197 417 GLEWISFKT 425 (480)
Q Consensus 417 ~l~~v~f~t 425 (480)
..+++..-+
T Consensus 124 ~~~~~y~~~ 132 (173)
T COG1898 124 DAEVVYKVT 132 (173)
T ss_pred ceEEEEEec
Confidence 565555443
No 88
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.70 E-value=0.018 Score=58.24 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=69.4
Q ss_pred ccccCCCC-CCcceecCCceEEEeCCCChhccccCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccch
Q 048197 47 IQDLNALE-PQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETY 125 (480)
Q Consensus 47 ~~~L~a~e-P~~~~~se~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf 125 (480)
|++|...+ |+. -+|=.+++.++..-+---.-|++..--|.||-.--+|.+-...++-|.+|+|.+-+ |+ +
T Consensus 229 L~~la~~e~~dp---~dG~~~ryvNP~TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~I---g~-~-- 299 (351)
T COG3435 229 LERLARLEEPDP---FDGYKMRYVNPVTGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTII---GG-E-- 299 (351)
T ss_pred HHHHHhccCCCC---CCcceEEEecCCCCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEE---CC-E--
Confidence 44444444 332 34444555555432222222333333466776778888888899999999999876 22 2
Q ss_pred hhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeC
Q 048197 126 QESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDV 181 (480)
Q Consensus 126 ~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~ 181 (480)
.++.++||+|+||.=.-|-+.|. .++.+++|+-|.
T Consensus 300 --------------------rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsfsD~ 334 (351)
T COG3435 300 --------------------RFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSFSDR 334 (351)
T ss_pred --------------------EeeccCCCEEEccCcceeecccC-CcceEEEecCCc
Confidence 36999999999999888888774 778888887653
No 89
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.69 E-value=0.031 Score=55.76 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=48.6
Q ss_pred cCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 79 ANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 79 ~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
.|-+..|+.+.+|=-..||+|+++.-+||++|....+ .+++ +..-|.+|.-+..|
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~~~-----~~~a--------------------~~~~l~~Gsy~~~P 88 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHNADYRGTVISGELHNG-----DPKA--------------------AAMWLPAGSYWFQP 88 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEESS-EEEEEEESEEEET-----TEE-------------------------E-TTEEEEE-
T ss_pred CCcceEEEEcCCCccCCCcceeeeEEEEEEEeEEEcC-----CCcc--------------------cceecCCCceEecc
Confidence 3888899999999899999999999999999976664 2221 12479999999999
Q ss_pred CCCEEEEEcCCCCcEEEE
Q 048197 159 TGSANWIYNDGPSELVVV 176 (480)
Q Consensus 159 aG~~h~~~N~G~~~l~~v 176 (480)
+|..|+....+++.|+++
T Consensus 89 aG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 89 AGEPHITAAEGETNLLFI 106 (251)
T ss_dssp TT-EEEETTS-EE-EEEE
T ss_pred CCCceeeeccCccEEEEE
Confidence 999999998888777655
No 90
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=95.68 E-value=0.022 Score=52.14 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=33.3
Q ss_pred ccccC-CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEE
Q 048197 362 HWNLN-AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVK 411 (480)
Q Consensus 362 Hwh~n-A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~ 411 (480)
-||.| +.||.|-++|...+-|++....+ +-.+++||+|..|++.+|.=
T Consensus 47 DyHine~eE~FyQ~kG~m~Lkv~e~g~~k--di~I~EGe~fLLP~~vpHsP 95 (151)
T PF06052_consen 47 DYHINETEEFFYQLKGDMCLKVVEDGKFK--DIPIREGEMFLLPANVPHSP 95 (151)
T ss_dssp SEEE-SS-EEEEEEES-EEEEEEETTEEE--EEEE-TTEEEEE-TT--EEE
T ss_pred ccccCCcceEEEEEeCcEEEEEEeCCceE--EEEeCCCcEEecCCCCCCCC
Confidence 35555 56999999999999999964334 34799999999999999974
No 91
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=95.63 E-value=0.053 Score=50.13 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=47.2
Q ss_pred CeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
.+++..++|+... ++...+.+|+.||++|+-.+. +.| +...-++|||++||+
T Consensus 76 ~l~~Gf~~le~~~--f~wtl~YDEi~~VlEG~L~i~--~~G------------------------~~~~A~~GDvi~iPk 127 (152)
T PF06249_consen 76 RLSAGFMELEKTS--FPWTLTYDEIKYVLEGTLEIS--IDG------------------------QTVTAKPGDVIFIPK 127 (152)
T ss_dssp SSEEEEEEEEEEE--EEEE-SSEEEEEEEEEEEEEE--ETT------------------------EEEEEETT-EEEE-T
T ss_pred ceeeEEEEEeCCC--ccEEeecceEEEEEEeEEEEE--ECC------------------------EEEEEcCCcEEEECC
Confidence 5777788888743 343358999999999976665 333 246899999999999
Q ss_pred CCEEEEEcCCCCcEEEEEEeeCC
Q 048197 160 GSANWIYNDGPSELVVVALVDVG 182 (480)
Q Consensus 160 G~~h~~~N~G~~~l~~v~~~d~~ 182 (480)
|...-+-- .....++++.-++
T Consensus 128 Gs~I~fst--~~~a~~~Yv~yPa 148 (152)
T PF06249_consen 128 GSTITFST--PDYARFFYVTYPA 148 (152)
T ss_dssp T-EEEEEE--EEEEEEEEEEEST
T ss_pred CCEEEEec--CCCEEEEEEECCC
Confidence 98765522 2345555554443
No 92
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=95.53 E-value=0.017 Score=53.49 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=45.4
Q ss_pred cccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc
Q 048197 357 AMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 357 am~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
-++++|-|+.. ||-||+.|+|+.-|-+-+++.+ .--++.||++++|+|--|-...
T Consensus 84 ~FfEEhlh~de-eiR~il~GtgYfDVrd~dd~WI-Ri~vekGDlivlPaGiyHRFTt 138 (179)
T KOG2107|consen 84 SFFEEHLHEDE-EIRYILEGTGYFDVRDKDDQWI-RIFVEKGDLIVLPAGIYHRFTT 138 (179)
T ss_pred HHHHHhcCchh-heEEEeecceEEeeccCCCCEE-EEEEecCCEEEecCcceeeeec
Confidence 46899999765 9999999999999999998742 1238999999999998876543
No 93
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.45 E-value=0.032 Score=55.66 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=45.4
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcC-CCCeEEEE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAS-NRGLEWIS 422 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag-~e~l~~v~ 422 (480)
|-+..+|++.+|=...|||| +++.-+|||+|.... . +.+.-..-|.+|.-++.|+|.+|+..+. .+.+.|+.
T Consensus 35 g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~----~-~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e 107 (251)
T PF14499_consen 35 GPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHN----G-DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIE 107 (251)
T ss_dssp S-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEE----T-TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE
T ss_pred CcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEc----C-CCcccceecCCCceEeccCCCceeeeccCccEEEEEE
Confidence 67889999999999999999 889999999996443 2 2222233599999999999999987664 44566653
No 94
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=95.45 E-value=0.25 Score=50.48 Aligned_cols=45 Identities=13% Similarity=0.423 Sum_probs=33.5
Q ss_pred cCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCC
Q 048197 365 LNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASN 415 (480)
Q Consensus 365 ~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~ 415 (480)
.+...+++|++|++++.. +|.. + +|++|+.++||++...+.+.++
T Consensus 251 ~~~~~il~v~~G~~~i~~---~~~~-~--~l~~G~~~~ipa~~~~~~i~g~ 295 (302)
T TIGR00218 251 QQSALILSVLEGSGRIKS---GGKT-L--PLKKGESFFIPAHLGPFTIEGE 295 (302)
T ss_pred CCCcEEEEEEcceEEEEE---CCEE-E--EEecccEEEEccCCccEEEEee
Confidence 356789999999998752 2332 3 6999999999999865555543
No 95
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.37 E-value=0.048 Score=52.72 Aligned_cols=69 Identities=12% Similarity=0.265 Sum_probs=48.8
Q ss_pred EEeeeecc-ccccccccccCCceEEEEEEeeEEEEEEecCC----------------------------------ceEEe
Q 048197 348 AEKGNLYQ-NAMMAPHWNLNAHSVVYITRGNGRMQIVAENG----------------------------------ENVFD 392 (480)
Q Consensus 348 a~~v~L~p-gam~~PHwh~nA~ei~yV~~G~grv~vv~~~G----------------------------------~~~f~ 392 (480)
...+-|.+ |+....|+.+ .+.|..+++|+=++.++.|.- ...+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 33455555 7788899987 789999999999999998840 02455
Q ss_pred eecCCccEEEECCCcEEEEEcC-CCC
Q 048197 393 GQIREGQLIVVPQGFAVVKRAS-NRG 417 (480)
Q Consensus 393 ~~l~~GdV~vVPqg~~~~~~ag-~e~ 417 (480)
..|++||+++||.||.|...+. .++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 6899999999999999998776 444
No 96
>PRK13503 transcriptional activator RhaS; Provisional
Probab=95.34 E-value=0.036 Score=54.87 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=42.8
Q ss_pred ccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcC
Q 048197 354 YQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAS 414 (480)
Q Consensus 354 ~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag 414 (480)
.+.....+||| +..+++||++|.+.+.|=+. .+ .+++||+++||.+-.|...+.
T Consensus 23 ~~~~~~~~H~H-~~~ei~~v~~G~~~~~i~~~----~~--~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 23 LPQAAFPEHHH-DFHEIVIVEHGTGIHVFNGQ----PY--TLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred Ccccccccccc-CceeEEEEecCceeeEecCC----cc--cccCCcEEEECCCccchhhhc
Confidence 34556789999 78899999999999766443 23 699999999999999875443
No 97
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=95.15 E-value=0.031 Score=49.36 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=34.7
Q ss_pred ccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcE-EEEE
Q 048197 362 HWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFA-VVKR 412 (480)
Q Consensus 362 Hwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~-~~~~ 412 (480)
+|+-..+|..|+++|+..++ ..+|+.+ ++++||++|+|+||. .|++
T Consensus 58 r~~y~~~E~chil~G~v~~T--~d~Ge~v---~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 58 RVTYDEDEFCHILEGRVEVT--PDGGEPV---EVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred eEEcccceEEEEEeeEEEEE--CCCCeEE---EEcCCCEEEECCCCeEEEEE
Confidence 44456799999999987644 4446654 599999999999997 4443
No 98
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=95.01 E-value=0.27 Score=44.22 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=51.9
Q ss_pred ceecCCceEEEeCCC-ChhccccCee-EEEE-EEcCCeeecCcccC-CCeEEEEEeceEEEEEEcCCCccchhhhhhccc
Q 048197 58 RVESEAGVTEFWDQN-DEQLQCANVA-VFRH-RIQQRGLVVPSYTN-TPELFYVVQGRGIHGAVFPGCPETYQESQQRSS 133 (480)
Q Consensus 58 ~~~se~G~~e~~~~~-~~~l~~~gvs-~~r~-~i~p~gl~lPh~~~-a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~ 133 (480)
.+..+-|.+...... +..|. +. +..+ ...++..+--|+|. ..++++|++|+..+.+-.....
T Consensus 10 ~~~D~RG~L~~~e~~~~ipf~---i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~----------- 75 (131)
T PF05523_consen 10 KISDERGSLSVIERFDDIPFE---IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE----------- 75 (131)
T ss_dssp EEEETTEEEEEEETTTSSSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-----------
T ss_pred ceeCCCCcEEEEeccCCCCCC---ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-----------
Confidence 356778887766543 33343 22 2222 24444458888885 8999999999999987543322
Q ss_pred ccccccccccceeEeecCC-cEEEeCCCCEEEEEcCCCCcEEEEEEee
Q 048197 134 ESQSRSQDQHQKVRQIREG-DLVALPTGSANWIYNDGPSELVVVALVD 180 (480)
Q Consensus 134 ~~~~~~~d~~qk~~~l~~G-DV~~iPaG~~h~~~N~G~~~l~~v~~~d 180 (480)
+...|..- ..+.||+|+.|-+.|.++. .+++.+.+
T Consensus 76 -----------~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~as 111 (131)
T PF05523_consen 76 -----------EEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLAS 111 (131)
T ss_dssp -----------EEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEES
T ss_pred -----------EEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEcC
Confidence 23456555 4899999999999998766 66555543
No 99
>PF12852 Cupin_6: Cupin
Probab=94.84 E-value=0.082 Score=49.68 Aligned_cols=47 Identities=30% Similarity=0.459 Sum_probs=37.8
Q ss_pred CCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCCC
Q 048197 101 TPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPS 171 (480)
Q Consensus 101 a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~ 171 (480)
...+.||++|++.+.+ ++..+ ...|++||++++|.|.+|++.-+.+.
T Consensus 35 ~~~fh~V~~G~~~l~~--~~~~~----------------------~~~L~~GDivllp~g~~H~l~~~~~~ 81 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRV--PGGGE----------------------PIRLEAGDIVLLPRGTAHVLSSDPDS 81 (186)
T ss_pred ceEEEEEECCeEEEEE--cCCCC----------------------eEEecCCCEEEEcCCCCeEeCCCCCC
Confidence 4788999999999985 44222 46999999999999999999765443
No 100
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=94.45 E-value=0.23 Score=45.76 Aligned_cols=69 Identities=20% Similarity=0.405 Sum_probs=50.1
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f 423 (480)
.|++.....++ ..--|..|-+|+.||++|+..|.+- |+.+. -.+|||++||.|--..+-..++ ..|+-+
T Consensus 99 ~l~aG~m~~~~---~tf~wtl~yDe~d~VlEGrL~V~~~---g~tv~---a~aGDvifiPKgssIefst~ge-a~flyv 167 (176)
T COG4766 99 RLGAGLMEMKN---TTFPWTLNYDEIDYVLEGRLHVRID---GRTVI---AGAGDVIFIPKGSSIEFSTTGE-AKFLYV 167 (176)
T ss_pred ccccceeeecc---ccCcceecccceeEEEeeeEEEEEc---CCeEe---cCCCcEEEecCCCeEEEeccce-EEEEEE
Confidence 46777777777 4456889999999999998876553 44453 6899999999998876644333 444443
No 101
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=94.39 E-value=0.09 Score=46.46 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=41.1
Q ss_pred CeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
.+...--...||.... . ....|..||++|++++. |..- +...+++||++++|+
T Consensus 44 ~~~~GiWe~TpG~~r~-~-y~~~E~chil~G~v~~T---~d~G----------------------e~v~~~aGD~~~~~~ 96 (116)
T COG3450 44 QVETGIWECTPGKFRV-T-YDEDEFCHILEGRVEVT---PDGG----------------------EPVEVRAGDSFVFPA 96 (116)
T ss_pred CeeEeEEEecCccceE-E-cccceEEEEEeeEEEEE---CCCC----------------------eEEEEcCCCEEEECC
Confidence 3444455667776642 2 24599999999999987 3221 257999999999999
Q ss_pred CCEEE
Q 048197 160 GSANW 164 (480)
Q Consensus 160 G~~h~ 164 (480)
|..--
T Consensus 97 G~~g~ 101 (116)
T COG3450 97 GFKGT 101 (116)
T ss_pred CCeEE
Confidence 97643
No 102
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=94.27 E-value=0.26 Score=46.65 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=62.7
Q ss_pred ceecCCceE-EEeCCCC-h--hccccCeeEEEE-EEcCCeeecCcccCCC----eEEEEEeceEEEEEEcC--CCccchh
Q 048197 58 RVESEAGVT-EFWDQND-E--QLQCANVAVFRH-RIQQRGLVVPSYTNTP----ELFYVVQGRGIHGAVFP--GCPETYQ 126 (480)
Q Consensus 58 ~~~se~G~~-e~~~~~~-~--~l~~~gvs~~r~-~i~p~gl~lPh~~~a~----el~yV~~G~g~~g~v~p--g~~etf~ 126 (480)
++.-+-|.+ |.|+.+. . .+.. .+.-..+ .-.+|.++-.||+..+ ++++|++|+...-+|+- +. .||-
T Consensus 16 ~~~D~RG~f~e~f~~~~~~~~~~~~-~~~q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~S-pTfg 93 (176)
T PF00908_consen 16 VFPDERGYFMETFREDEFAEAGLPP-EFVQDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGS-PTFG 93 (176)
T ss_dssp EEEETTEEEEEEEEHHHHHHHHSST--EEEEEEEEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTS-TTTT
T ss_pred eeccCCEeEehHhhhHHHHHhcccc-ccCceEEEEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCC-CCCC
Confidence 455566665 6776532 1 1111 2211122 2345889999998654 99999999999999873 32 3551
Q ss_pred hhhhcccccccccccccceeEeecCCc--EEEeCCCCEEEEEcCCCCcEEEE
Q 048197 127 ESQQRSSESQSRSQDQHQKVRQIREGD--LVALPTGSANWIYNDGPSELVVV 176 (480)
Q Consensus 127 ~~~~~~~~~~~~~~d~~qk~~~l~~GD--V~~iPaG~~h~~~N~G~~~l~~v 176 (480)
++. ...|.+++ .++||+|++|=+++.++.-.++.
T Consensus 94 ---------------~~~-~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y 129 (176)
T PF00908_consen 94 ---------------KWV-SVELSAENPRQLYIPPGVAHGFQTLEDDAEVLY 129 (176)
T ss_dssp ----------------EE-EEEEETTT--EEEE-TTEEEEEEESSSEEEEEE
T ss_pred ---------------EEE-EEEeCccccCEEEeCCcceeeEEeccCceEEEE
Confidence 111 35676665 79999999999999877644443
No 103
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=94.26 E-value=0.059 Score=50.09 Aligned_cols=53 Identities=23% Similarity=0.438 Sum_probs=41.8
Q ss_pred eeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeE-eecCCcEEEeCCCCEEEEE
Q 048197 92 GLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVR-QIREGDLVALPTGSANWIY 166 (480)
Q Consensus 92 gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~-~l~~GDV~~iPaG~~h~~~ 166 (480)
.+..+|-|...++-||+.|.|..-+-.-. + +- |+ -++.||.|++|||+-|-+-
T Consensus 84 ~FfEEhlh~deeiR~il~GtgYfDVrd~d--d------------------~W--IRi~vekGDlivlPaGiyHRFT 137 (179)
T KOG2107|consen 84 SFFEEHLHEDEEIRYILEGTGYFDVRDKD--D------------------QW--IRIFVEKGDLIVLPAGIYHRFT 137 (179)
T ss_pred HHHHHhcCchhheEEEeecceEEeeccCC--C------------------CE--EEEEEecCCEEEecCcceeeee
Confidence 46678889999999999999999874322 1 11 33 7899999999999999764
No 104
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=93.52 E-value=0.48 Score=45.68 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=52.5
Q ss_pred EEEEEEcC-CeeecCcccCCCeEEEEEeceEEEEEEcCCCc-cchhhhhhcc-------------cccccccccccceeE
Q 048197 83 VFRHRIQQ-RGLVVPSYTNTPELFYVVQGRGIHGAVFPGCP-ETYQESQQRS-------------SESQSRSQDQHQKVR 147 (480)
Q Consensus 83 ~~r~~i~p-~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~-etf~~~~~~~-------------~~~~~~~~d~~qk~~ 147 (480)
...+-|-+ |+....||-..+-++.++.|+=++-++-|... .-|....... ...-.++.+.+-...
T Consensus 132 ~~~l~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~ 211 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEV 211 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEE
T ss_pred ccEEEEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEE
Confidence 44566766 55666666567889999999999999988632 2222221000 000112222222356
Q ss_pred eecCCcEEEeCCCCEEEEEcCCCCc
Q 048197 148 QIREGDLVALPTGSANWIYNDGPSE 172 (480)
Q Consensus 148 ~l~~GDV~~iPaG~~h~~~N~G~~~ 172 (480)
.|++||+++||+|..|++.|..+++
T Consensus 212 ~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 212 VLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EECCCeEEEECCCCeEEEEEcCCCC
Confidence 9999999999999999999984444
No 105
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.14 E-value=0.16 Score=43.33 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=20.6
Q ss_pred eEeecCCcEEEeCCCCEEEEEcCCCC
Q 048197 146 VRQIREGDLVALPTGSANWIYNDGPS 171 (480)
Q Consensus 146 ~~~l~~GDV~~iPaG~~h~~~N~G~~ 171 (480)
....++||.|++|+|..||.+|.|+.
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred cceECCCCEEEECCCceEEEEeCCce
Confidence 35789999999999999999999985
No 106
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=93.14 E-value=1.1 Score=42.43 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=68.7
Q ss_pred ccCCCCCCcceecCCce-EEEeCCCChhccccCee-----EEEEEEcCCeeecCcccC---CCeEEEEEeceEEEEEEcC
Q 048197 49 DLNALEPQQRVESEAGV-TEFWDQNDEQLQCANVA-----VFRHRIQQRGLVVPSYTN---TPELFYVVQGRGIHGAVFP 119 (480)
Q Consensus 49 ~L~a~eP~~~~~se~G~-~e~~~~~~~~l~~~gvs-----~~r~~i~p~gl~lPh~~~---a~el~yV~~G~g~~g~v~p 119 (480)
-+-..+|. ++.-+-|. +|.|..+. |..+|+. ...-.-.+|.++-.||+. -.++++|++|+...-+|+.
T Consensus 9 Gv~~i~~~-~~~D~RG~f~e~f~~~~--~~~~g~~~~~~Q~n~S~S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDl 85 (176)
T TIGR01221 9 DVLLIEPR-VFGDERGFFMETYNDEA--FQEQGIPVRFVQDNHSKSYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDL 85 (176)
T ss_pred CEEEEeCc-EEeeCCCCEEeeeehhh--HHHcCCCCCcceeEEEEecCCEEEEEEECCCCCCceEEEEccCCEEEEEEEC
Confidence 33444554 35555555 46676542 1112322 111123668899999973 5899999999999988875
Q ss_pred C-CccchhhhhhcccccccccccccceeEeecC--CcEEEeCCCCEEEEEcCCCCcEEEEEEe
Q 048197 120 G-CPETYQESQQRSSESQSRSQDQHQKVRQIRE--GDLVALPTGSANWIYNDGPSELVVVALV 179 (480)
Q Consensus 120 g-~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~--GDV~~iPaG~~h~~~N~G~~~l~~v~~~ 179 (480)
- .+.|| -+++ ...|.+ +-.++||+|++|=+++.++. ..++.+.
T Consensus 86 R~~SpTf---------------G~~~-~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~~ 131 (176)
T TIGR01221 86 RRNSPTF---------------GKWV-GVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYKC 131 (176)
T ss_pred CCCcCCC---------------CeEE-EEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEeC
Confidence 2 12355 1122 235555 66999999999999998766 4444443
No 107
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=92.94 E-value=0.36 Score=49.75 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=47.8
Q ss_pred eEEeeeecccc--ccccccccCCceEEEEEEeeEEEEEEecCC-----------------ceEEeeecCCccEEEECCCc
Q 048197 347 SAEKGNLYQNA--MMAPHWNLNAHSVVYITRGNGRMQIVAENG-----------------ENVFDGQIREGQLIVVPQGF 407 (480)
Q Consensus 347 sa~~v~L~pga--m~~PHwh~nA~ei~yV~~G~grv~vv~~~G-----------------~~~f~~~l~~GdV~vVPqg~ 407 (480)
..+.+.+.|+| =+.|||-. -+-++.=+.|+=+..|..+.. ...++..|++|||+|||+|+
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 44556788888 88999943 334445567888888887421 12445689999999999999
Q ss_pred EEEEEcCCCCeEE-EEEE
Q 048197 408 AVVKRASNRGLEW-ISFK 424 (480)
Q Consensus 408 ~~~~~ag~e~l~~-v~f~ 424 (480)
+|.-.+.+..+.+ ++|.
T Consensus 193 ~H~~~~~~~S~hltv~~~ 210 (319)
T PF08007_consen 193 WHQAVTTDPSLHLTVGFR 210 (319)
T ss_dssp EEEEEESS-EEEEEEEEC
T ss_pred cCCCCCCCCceEEEEeee
Confidence 9998776655555 4443
No 108
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=92.91 E-value=0.61 Score=42.98 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=47.9
Q ss_pred CeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
-+++..+..++ -.+|-..+.+++-||++|+.-+-+ .|. .-.-.+|||++||.
T Consensus 99 ~l~aG~m~~~~--~tf~wtl~yDe~d~VlEGrL~V~~--~g~------------------------tv~a~aGDvifiPK 150 (176)
T COG4766 99 RLGAGLMEMKN--TTFPWTLNYDEIDYVLEGRLHVRI--DGR------------------------TVIAGAGDVIFIPK 150 (176)
T ss_pred ccccceeeecc--ccCcceecccceeEEEeeeEEEEE--cCC------------------------eEecCCCcEEEecC
Confidence 35555667777 345766799999999999876654 332 24678999999999
Q ss_pred CCEEEEEcCCCCcEEEEEE
Q 048197 160 GSANWIYNDGPSELVVVAL 178 (480)
Q Consensus 160 G~~h~~~N~G~~~l~~v~~ 178 (480)
|.-.-+--.|. ..++.+
T Consensus 151 gssIefst~ge--a~flyv 167 (176)
T COG4766 151 GSSIEFSTTGE--AKFLYV 167 (176)
T ss_pred CCeEEEeccce--EEEEEE
Confidence 98776654444 444444
No 109
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=91.44 E-value=1.2 Score=43.43 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=60.5
Q ss_pred CeEEEEEecCCCCcccccceeEEeeeecccccc---ccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEE
Q 048197 327 GGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMM---APHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVV 403 (480)
Q Consensus 327 ~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~---~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vV 403 (480)
+-+.++++++++ + .+|-+..+.++|||.. +-|. -- -=.||++|+|.-..=. +.+ +|++||.+..
T Consensus 167 g~~attv~P~d~---r-~Dmhv~ivsFePGa~ip~aEtHv--mE-HGlyvLeGk~vYrLn~---dwv---~V~aGD~mwm 233 (264)
T COG3257 167 GVIATTVLPKEL---R-FDMHVHIVSFEPGASIPYAETHV--ME-HGLYVLEGKGVYRLNN---NWV---PVEAGDYIWM 233 (264)
T ss_pred CeEEEeeCcccc---C-cceEEEEEEecCCcccchhhhhh--hh-cceEEEecceEEeecC---ceE---EeecccEEEe
Confidence 445566666653 2 3688888999999975 3444 22 2379999998755422 333 6999999999
Q ss_pred CCCcEEEEEcC-CCCeEEEEEEe
Q 048197 404 PQGFAVVKRAS-NRGLEWISFKT 425 (480)
Q Consensus 404 Pqg~~~~~~ag-~e~l~~v~f~t 425 (480)
=+..+-+-.++ ...+.++-.++
T Consensus 234 ~A~cpQacyagG~g~frYLlyKD 256 (264)
T COG3257 234 GAYCPQACYAGGRGAFRYLLYKD 256 (264)
T ss_pred eccChhhhccCCCCceEEEEEec
Confidence 98888777775 55688887775
No 110
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=91.11 E-value=0.83 Score=38.76 Aligned_cols=73 Identities=23% Similarity=0.283 Sum_probs=39.4
Q ss_pred eeeccccccccccccCCc-eEEEEEE---eeEEEEEEecCCc-----------------eEEeeecCCccEEEECCCcEE
Q 048197 351 GNLYQNAMMAPHWNLNAH-SVVYITR---GNGRMQIVAENGE-----------------NVFDGQIREGQLIVVPQGFAV 409 (480)
Q Consensus 351 v~L~pgam~~PHwh~nA~-ei~yV~~---G~grv~vv~~~G~-----------------~~f~~~l~~GdV~vVPqg~~~ 409 (480)
...++|+...+|.|+++. .-+|.++ +.+.+.+.++++. ..+.-+.++||++++|.-..|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 356789999999999986 5666663 4566777776431 123347899999999999888
Q ss_pred EEEc--CCCCeEEEEE
Q 048197 410 VKRA--SNRGLEWISF 423 (480)
Q Consensus 410 ~~~a--g~e~l~~v~f 423 (480)
.... +++.-.-|+|
T Consensus 85 ~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 85 GVPPNNSDEERISISF 100 (101)
T ss_dssp EE----SSS-EEEEEE
T ss_pred eccCcCCCCCEEEEEc
Confidence 8643 3433334555
No 111
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=90.84 E-value=1.5 Score=40.86 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=45.3
Q ss_pred eEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcC--CCccchhhhhhcccccccccccccceeEeecCCcEEEeCC
Q 048197 82 AVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFP--GCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 82 s~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~p--g~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
.+....|.||+...||.-..... =+.-++++.| +|. + +.. .+.+..++|+++++-.
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~-----lR~Hl~L~~p~~~~~--~------------~v~---~~~~~w~~G~~~~fD~ 138 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLR-----LRLHLPLIVPNPGCY--I------------RVG---GETRHWREGECWVFDD 138 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTE-----EEEEEEEC--STTEE--E------------EET---TEEEB--CTEEEEE-T
T ss_pred hEEEEEECCCCEECCeeCCCCcc-----eEEEEEEEcCCCCeE--E------------EEC---CeEEEeccCcEEEEeC
Confidence 45566889999999998543222 2445666665 331 1 001 1357899999999999
Q ss_pred CCEEEEEcCCCCcEEEEEEeeC
Q 048197 160 GSANWIYNDGPSELVVVALVDV 181 (480)
Q Consensus 160 G~~h~~~N~G~~~l~~v~~~d~ 181 (480)
...|+.+|.|+++=+++ ++|.
T Consensus 139 s~~H~~~N~~~~~Rv~L-~vD~ 159 (163)
T PF05118_consen 139 SFEHEVWNNGDEDRVVL-IVDF 159 (163)
T ss_dssp TS-EEEEESSSS-EEEE-EEEE
T ss_pred CEEEEEEeCCCCCEEEE-EEEe
Confidence 99999999998654443 3464
No 112
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.68 E-value=0.13 Score=55.04 Aligned_cols=87 Identities=20% Similarity=0.294 Sum_probs=58.1
Q ss_pred CCeEEEEEecCCCCc--------cccc--ceeEEeeeeccccc--cccccccCCceEEEEEEeeEEEEEEecC-------
Q 048197 326 RGGRVTTVNRFNLPI--------LRYI--QLSAEKGNLYQNAM--MAPHWNLNAHSVVYITRGNGRMQIVAEN------- 386 (480)
Q Consensus 326 ~~G~i~~~~~~~~P~--------L~~l--~lsa~~v~L~pgam--~~PHwh~nA~ei~yV~~G~grv~vv~~~------- 386 (480)
++-+|..+++..|-. |+.. -+-.+-+.|+|-+- ++|||- +-.-.+.=++|+-+..+..|.
T Consensus 286 ~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel~ 364 (629)
T KOG3706|consen 286 KGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEELA 364 (629)
T ss_pred cCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhhh
Confidence 345566666665531 2210 23445566766554 699993 444555567888889888773
Q ss_pred ------------CceEEeeecCCccEEEECCCcEEEEEc
Q 048197 387 ------------GENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 387 ------------G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
|+-+++.-|++||++|||+|+.|--..
T Consensus 365 l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 365 LVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred hccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 445777889999999999999997543
No 113
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=90.27 E-value=1.9 Score=36.94 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=46.5
Q ss_pred EeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEEE
Q 048197 349 EKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFK 424 (480)
Q Consensus 349 ~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f~ 424 (480)
..+.|+||+-+.....+.-+-++||++|.+.+ + |.. ..+.+|+++++..+-.....+.+++.+++-+.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v---~--~~~---~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV---G--GEE---DPLEAGQLVVLEDGDEIELTAGEEGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE---T--TTT---EEEETTEEEEE-SECEEEEEESSSSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEE---C--CCc---ceECCCcEEEECCCceEEEEECCCCcEEEEEE
Confidence 35778888887544444456899999999754 2 332 25889999999977777777776888888775
No 114
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=89.72 E-value=2 Score=40.73 Aligned_cols=78 Identities=19% Similarity=0.084 Sum_probs=53.6
Q ss_pred CCeeecCcccCC--CeEEEEEeceEEEEEEcCCCc-cchhhhhhcccccccccccccceeEeecC--CcEEEeCCCCEEE
Q 048197 90 QRGLVVPSYTNT--PELFYVVQGRGIHGAVFPGCP-ETYQESQQRSSESQSRSQDQHQKVRQIRE--GDLVALPTGSANW 164 (480)
Q Consensus 90 p~gl~lPh~~~a--~el~yV~~G~g~~g~v~pg~~-etf~~~~~~~~~~~~~~~d~~qk~~~l~~--GDV~~iPaG~~h~ 164 (480)
||-++--||+.. .+++.|++|+...-+|+-.-. -||. ... ...+.. .-++.||+|++|=
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg---------------~~~-~~~ls~~N~~~l~IP~G~AHG 117 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYG---------------KWV-GVVLSAENKRQLYIPPGFAHG 117 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcc---------------eEE-EEEecCCCceEEEeCCcccce
Confidence 888999999863 699999999999999875321 1551 011 123332 3689999999999
Q ss_pred EEcCCCCcEEEEEEeeCCC
Q 048197 165 IYNDGPSELVVVALVDVGN 183 (480)
Q Consensus 165 ~~N~G~~~l~~v~~~d~~n 183 (480)
++|.+|+..++...-+.-+
T Consensus 118 f~~L~d~~~~~y~~~~~Y~ 136 (173)
T COG1898 118 FQVLSDDAEVVYKVTEEYD 136 (173)
T ss_pred eEEccCceEEEEEecceeC
Confidence 9999998744433333333
No 115
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=89.45 E-value=2.4 Score=41.46 Aligned_cols=87 Identities=14% Similarity=0.194 Sum_probs=64.7
Q ss_pred EEeCCCChhccccCeeEEEEEEcCCeeecCcc--cCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccc
Q 048197 67 EFWDQNDEQLQCANVAVFRHRIQQRGLVVPSY--TNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQ 144 (480)
Q Consensus 67 e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~--~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~q 144 (480)
..+|+++..+ ++.+.-++++||+.. |.- |--..=+||++|+|+.-+- +.
T Consensus 171 ttv~P~d~r~---Dmhv~ivsFePGa~i-p~aEtHvmEHGlyvLeGk~vYrLn-----~d-------------------- 221 (264)
T COG3257 171 TTVLPKELRF---DMHVHIVSFEPGASI-PYAETHVMEHGLYVLEGKGVYRLN-----NN-------------------- 221 (264)
T ss_pred EeeCccccCc---ceEEEEEEecCCccc-chhhhhhhhcceEEEecceEEeec-----Cc--------------------
Confidence 4567765433 588888999999964 332 2234557999999998762 11
Q ss_pred eeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeCCC
Q 048197 145 KVRQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGN 183 (480)
Q Consensus 145 k~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~~n 183 (480)
-..|++||.|.+-|--+.|+|.-|...+..+.--|.+-
T Consensus 222 -wv~V~aGD~mwm~A~cpQacyagG~g~frYLlyKDvNR 259 (264)
T COG3257 222 -WVPVEAGDYIWMGAYCPQACYAGGRGAFRYLLYKDVNR 259 (264)
T ss_pred -eEEeecccEEEeeccChhhhccCCCCceEEEEEecccc
Confidence 36899999999999999999999888777765556543
No 116
>PF12852 Cupin_6: Cupin
Probab=89.41 E-value=1.1 Score=41.90 Aligned_cols=42 Identities=24% Similarity=0.497 Sum_probs=33.5
Q ss_pred ceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc
Q 048197 368 HSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 368 ~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
..+.||++|+.++.+=+ .+. .+ .|++||++++|+|.+|..-.
T Consensus 36 ~~fh~V~~G~~~l~~~~-~~~-~~--~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPG-GGE-PI--RLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred eEEEEEECCeEEEEEcC-CCC-eE--EecCCCEEEEcCCCCeEeCC
Confidence 57889999999999443 233 33 69999999999999999844
No 117
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=89.38 E-value=2.1 Score=45.88 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=35.6
Q ss_pred ccccccccccccC-CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEE
Q 048197 354 YQNAMMAPHWNLN-AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAV 409 (480)
Q Consensus 354 ~pgam~~PHwh~n-A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~ 409 (480)
.+++++.|.||-| .+|+++.+.|.-... +..+.+|.+-.=|.+++|
T Consensus 326 ~e~TfrpPyyHrNv~sEfmgli~G~y~ak----------~~gf~pGg~SLH~~~~pH 372 (438)
T PRK05341 326 AENTFRPPWFHRNVMSEFMGLIHGVYDAK----------AEGFVPGGASLHNCMSPH 372 (438)
T ss_pred CCCccCCCCCccchhhhhhhhcccccccc----------ccCcCCCeeeecCCCCCC
Confidence 7999999999999 469999999864311 113778888888888885
No 118
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.79 E-value=1.6 Score=45.66 Aligned_cols=70 Identities=9% Similarity=0.206 Sum_probs=50.9
Q ss_pred eeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEE
Q 048197 346 LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWI 421 (480)
Q Consensus 346 lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v 421 (480)
.++-.+++..|.-+---. .+..+|..|++|+|.+.--. +... .+++|||++||+.++..+.+.++.|...
T Consensus 333 F~v~~~~v~~g~~~~~~~-~~~~SIllv~~G~g~l~~~t--~~~~---~v~rG~V~fI~a~~~i~~~~~sd~~~~y 402 (411)
T KOG2757|consen 333 FAVLETKVPTGESYKFPG-VDGPSILLVLKGSGILKTDT--DSKI---LVNRGDVLFIPANHPIHLSSSSDPFLGY 402 (411)
T ss_pred eeEEEeecCCCceEEeec-CCCceEEEEEecceEEecCC--CCce---eeccCcEEEEcCCCCceeeccCcceeee
Confidence 677777777766532222 36789999999999887543 2222 5899999999999998777777765543
No 119
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=88.53 E-value=1 Score=48.21 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=33.8
Q ss_pred CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEE
Q 048197 100 NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVV 176 (480)
Q Consensus 100 ~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v 176 (480)
+.++|+|+.+|++.+...+ - .-.+++||+++||+|+.+-+.=+|...+.++
T Consensus 145 DGD~Li~~q~G~l~l~Te~---G-----------------------~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~ 195 (424)
T PF04209_consen 145 DGDELIFPQQGSLRLETEF---G-----------------------RLDVRPGDYVVIPRGTRFRVELPGPARGYII 195 (424)
T ss_dssp SEEEEEEEEES-EEEEETT---E-----------------------EEEE-TTEEEEE-TT--EEEE-SSSEEEEEE
T ss_pred CCCEEEEEEECCEEEEecC---e-----------------------eEEEcCCeEEEECCeeEEEEEeCCCceEEEE
Confidence 5789999999999997532 1 3589999999999999998866644444333
No 120
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=88.49 E-value=2.9 Score=43.12 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=39.6
Q ss_pred EEEEcCCe--eecCcccCCCeEEEEEeceEEEEEEcCCCc-cchhhhhhcccccccccccccceeEeecCCcEEEeCCCC
Q 048197 85 RHRIQQRG--LVVPSYTNTPELFYVVQGRGIHGAVFPGCP-ETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGS 161 (480)
Q Consensus 85 r~~i~p~g--l~lPh~~~a~el~yV~~G~g~~g~v~pg~~-etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~ 161 (480)
.+-+.|+| =+-|||-+.+-++.=+.|+=.-.+-.+... ..+.+...-. .-..+ ..-....|++||+++||+|+
T Consensus 117 n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 117 NAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFK--QLEEF--EPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TT--TCG----STSEEEEE-TT-EEEE-TT-
T ss_pred EEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCcc--ccccC--ceeEEEEECCCCEEEECCCc
Confidence 34466666 667888776666666666544444332111 1110000000 00000 11114689999999999999
Q ss_pred EEEEEcCC
Q 048197 162 ANWIYNDG 169 (480)
Q Consensus 162 ~h~~~N~G 169 (480)
.|+....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999988
No 121
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=88.27 E-value=2.1 Score=45.93 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=44.8
Q ss_pred CCCCcccccceeEEeeeeccccc-cccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcC
Q 048197 336 FNLPILRYIQLSAEKGNLYQNAM-MAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAS 414 (480)
Q Consensus 336 ~~~P~L~~l~lsa~~v~L~pgam-~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag 414 (480)
..-|.++. ||++..... ...| -.--+|.++++++|+.+|+++++= .-|. + .+++||++|||+|..+-+.-.
T Consensus 116 ~gd~~~~~-g~ai~~y~~-~~sM~~~~f~NaDGD~Li~~q~G~l~l~T--e~G~--L--~v~pGd~~VIPRG~~~rv~l~ 187 (424)
T PF04209_consen 116 AGDPLSNN-GVAIHVYAA-NASMDDRAFRNADGDELIFPQQGSLRLET--EFGR--L--DVRPGDYVVIPRGTRFRVELP 187 (424)
T ss_dssp ECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEE--TTEE--E--EE-TTEEEEE-TT--EEEE-S
T ss_pred CccccccC-CcEEEEEEc-CCCCCCcceEcCCCCEEEEEEECCEEEEe--cCee--E--EEcCCeEEEECCeeEEEEEeC
Confidence 33355443 444332222 2344 344457778899999999988654 3343 3 499999999999998876544
Q ss_pred CCCeEEEEEE
Q 048197 415 NRGLEWISFK 424 (480)
Q Consensus 415 ~e~l~~v~f~ 424 (480)
++...+.+.
T Consensus 188 -~p~rgyi~E 196 (424)
T PF04209_consen 188 -GPARGYIIE 196 (424)
T ss_dssp -SSEEEEEEE
T ss_pred -CCceEEEEE
Confidence 556655544
No 122
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=88.23 E-value=1.6 Score=43.71 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=37.6
Q ss_pred CcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCC
Q 048197 96 PSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGP 170 (480)
Q Consensus 96 Ph~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~ 170 (480)
|+-.+.-.+.|+++|.|.+-+ .+ +...+++||++++|+|.+|.+....+
T Consensus 44 ~~~~~~~~i~~~~~G~~~~~~--~~------------------------~~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGMKGYILNLTIRGQGVIFN--GG------------------------RAFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCccceEEEEEEeccEEEec--CC------------------------eeEecCCCCEEEECCCCceeeccCCC
Confidence 344455678899999998753 22 24799999999999999998877544
No 123
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=87.66 E-value=3 Score=44.67 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=46.9
Q ss_pred cCeeEEEEEEcCCeeecCc-cc--CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEE
Q 048197 79 ANVAVFRHRIQQRGLVVPS-YT--NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLV 155 (480)
Q Consensus 79 ~gvs~~r~~i~p~gl~lPh-~~--~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~ 155 (480)
.|+++.-. .++.-+..+ |. +.++|+|+.+|++.+...+- .-.+++||++
T Consensus 125 ~G~ai~iy--~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--------------------------~L~v~pgei~ 176 (429)
T TIGR01015 125 TGLAIHIY--LCNASMENRAFYNADGDFLIVPQQGALLITTEFG--------------------------RLLVEPNEIC 176 (429)
T ss_pred cCceEEEE--eCCCCcccceeeccCCCEEEEEEeCcEEEEEecc--------------------------ceEecCCCEE
Confidence 45554433 333333233 33 57899999999999976421 2589999999
Q ss_pred EeCCCCEEEEEcCCCCcEEEE
Q 048197 156 ALPTGSANWIYNDGPSELVVV 176 (480)
Q Consensus 156 ~iPaG~~h~~~N~G~~~l~~v 176 (480)
+||+|+.+-+.=.|...+.++
T Consensus 177 VIPRG~~frv~l~gp~rgyi~ 197 (429)
T TIGR01015 177 VIPRGVRFRVTVLEPARGYIC 197 (429)
T ss_pred EecCccEEEEeeCCCceEEEE
Confidence 999999988765554444433
No 124
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=87.56 E-value=3.4 Score=43.95 Aligned_cols=65 Identities=11% Similarity=0.252 Sum_probs=44.4
Q ss_pred CeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
...+.++.+..+...++. ..+.+++|++|++.+.. .+ + ...|++|++++||+
T Consensus 320 ~F~~~~~~l~~~~~~~~~--~~~~Illv~~G~~~i~~--~~--~----------------------~~~l~~G~~~fipa 371 (389)
T PRK15131 320 DFAFSLHDLSDQPTTLSQ--QSAAILFCVEGEAVLWK--GE--Q----------------------QLTLKPGESAFIAA 371 (389)
T ss_pred CcEEEEEEECCceEEecC--CCcEEEEEEcceEEEEe--CC--e----------------------EEEECCCCEEEEeC
Confidence 344556666554444443 67899999999999852 12 1 35799999999999
Q ss_pred CCEEEEEcCCCCcE
Q 048197 160 GSANWIYNDGPSEL 173 (480)
Q Consensus 160 G~~h~~~N~G~~~l 173 (480)
+...+.. .|+..+
T Consensus 372 ~~~~~~~-~g~~~~ 384 (389)
T PRK15131 372 NESPVTV-SGHGRL 384 (389)
T ss_pred CCccEEE-ecccEE
Confidence 9876665 354433
No 125
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=87.01 E-value=1.7 Score=42.04 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=47.7
Q ss_pred eeeeccccccccccccCCc--eEEEEE--EeeEEEEEEecCCc-----------------eEEeeecCCccEEEECCCcE
Q 048197 350 KGNLYQNAMMAPHWNLNAH--SVVYIT--RGNGRMQIVAENGE-----------------NVFDGQIREGQLIVVPQGFA 408 (480)
Q Consensus 350 ~v~L~pgam~~PHwh~nA~--ei~yV~--~G~grv~vv~~~G~-----------------~~f~~~l~~GdV~vVPqg~~ 408 (480)
.+.+.+|+...+|.||++. -+.||. .+.+.+.+.+|... ....-.-++||++++|.-+.
T Consensus 100 ~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~ 179 (201)
T TIGR02466 100 VNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLR 179 (201)
T ss_pred EEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCc
Confidence 3466899999999999984 444444 34455555554311 01112458999999999999
Q ss_pred EEEEc--CCCCeEEEEEE
Q 048197 409 VVKRA--SNRGLEWISFK 424 (480)
Q Consensus 409 ~~~~a--g~e~l~~v~f~ 424 (480)
|.... +++.-.-|+|.
T Consensus 180 H~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 180 HEVPPNESEEERISVSFN 197 (201)
T ss_pred eecCCCCCCCCEEEEEEe
Confidence 88633 34444446664
No 126
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.05 E-value=2.5 Score=42.65 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=52.0
Q ss_pred cccccccccc-cCCceEEEEEEeeEEEEEEecCCceEEeeecCC-ccEEEECCCcEEEEEcCCCCeE-EEEEEe
Q 048197 355 QNAMMAPHWN-LNAHSVVYITRGNGRMQIVAENGENVFDGQIRE-GQLIVVPQGFAVVKRASNRGLE-WISFKT 425 (480)
Q Consensus 355 pgam~~PHwh-~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~-GdV~vVPqg~~~~~~ag~e~l~-~v~f~t 425 (480)
|++++.||-| +-..+.+-|++|+..+-+++++|...-...+.+ ++.-+||.+-.|.+...+++.. ++.|..
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~fy~ 93 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSFYC 93 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEEEE
Confidence 7788899998 567799999999999999999987544344544 4455688888887766555544 456653
No 127
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=85.91 E-value=4.2 Score=42.58 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCceEEEeCCCChhccccCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhccccccccccc
Q 048197 62 EAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQD 141 (480)
Q Consensus 62 e~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d 141 (480)
..|.+..+++.-+ ..++.+.++.+|.-..--..+.+.++.|++|+|++..-. +
T Consensus 319 ~~~~~~~Y~Ppi~-----eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t-~--------------------- 371 (411)
T KOG2757|consen 319 LDGYVLLYDPPIE-----EFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKTDT-D--------------------- 371 (411)
T ss_pred CCCceeEeCCCCc-----ceeEEEeecCCCceEEeecCCCceEEEEEecceEEecCC-C---------------------
Confidence 3455666665433 556777788886654444568899999999999997521 1
Q ss_pred ccceeEeecCCcEEEeCCCCEEEEEcCCCCcEE
Q 048197 142 QHQKVRQIREGDLVALPTGSANWIYNDGPSELV 174 (480)
Q Consensus 142 ~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~ 174 (480)
+..-+.+|||++|||-+..-+- ..++++.
T Consensus 372 ---~~~~v~rG~V~fI~a~~~i~~~-~~sd~~~ 400 (411)
T KOG2757|consen 372 ---SKILVNRGDVLFIPANHPIHLS-SSSDPFL 400 (411)
T ss_pred ---CceeeccCcEEEEcCCCCceee-ccCccee
Confidence 1368999999999999987553 3344433
No 128
>PLN02658 homogentisate 1,2-dioxygenase
Probab=84.46 E-value=3.6 Score=44.13 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=34.2
Q ss_pred ccccccccccccC-CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEE
Q 048197 354 YQNAMMAPHWNLN-AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAV 409 (480)
Q Consensus 354 ~pgam~~PHwh~n-A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~ 409 (480)
.-++++.|.||-| ..|+++.+.|.-. . + ++.+.+|.+-.=|.+++|
T Consensus 320 ae~TfrpPyyHrN~~sEfmgli~G~y~-----a--k---~~gf~pGg~SLH~~~~pH 366 (435)
T PLN02658 320 AEHTFRPPYYHRNCMSEFMGLIYGSYE-----A--K---ADGFLPGGASLHSCMTPH 366 (435)
T ss_pred ccCccCCCCCccchhhhhhhhcccccc-----c--c---cCCccCCeeeecCCCCCC
Confidence 3499999999999 4699988888721 1 0 113778888888888875
No 129
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=83.55 E-value=7.2 Score=41.95 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=49.1
Q ss_pred ceeEEeeeeccccc-cccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEE
Q 048197 345 QLSAEKGNLYQNAM-MAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423 (480)
Q Consensus 345 ~lsa~~v~L~pgam-~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f 423 (480)
||++....... .| -.--+|.++++++|+.+|++++.=-. |. + ++++||++|||+|.-+.+.-.+.....+..
T Consensus 132 G~ai~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L--~v~pgei~VIPRG~~frv~l~~gp~rgyi~ 204 (438)
T PRK05341 132 GMAIHLYAANR-SMQDRYFYNADGELLIVPQQGRLRLATEL--GV--L--DVEPGEIAVIPRGVKFRVELPDGPARGYVC 204 (438)
T ss_pred ccEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEec--cc--e--EecCCCEEEEcCccEEEEecCCCCeeEEEE
Confidence 45554444443 55 45566777889999999999876544 43 3 589999999999998877543334444433
No 130
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=83.28 E-value=7 Score=31.52 Aligned_cols=52 Identities=15% Similarity=0.315 Sum_probs=43.2
Q ss_pred EEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEE
Q 048197 372 YITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423 (480)
Q Consensus 372 yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f 423 (480)
.-..|...++|.+.+|+.+|...+++||..-++..-+..+..|+-+..-+.+
T Consensus 3 l~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~v~v~~ 54 (77)
T PF13464_consen 3 LTATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGAVEVTV 54 (77)
T ss_pred EEEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 3446889999999999999999999999999988888888888766555554
No 131
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=83.12 E-value=3 Score=35.68 Aligned_cols=57 Identities=21% Similarity=0.354 Sum_probs=36.7
Q ss_pred EEEEEcCCee-ecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCE
Q 048197 84 FRHRIQQRGL-VVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSA 162 (480)
Q Consensus 84 ~r~~i~p~gl-~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~ 162 (480)
..++|+|++- .+|.=.....++||++|++.++ + + ...+.+|+++++..|..
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~----~--~----------------------~~~~~~~~~~~l~~g~~ 53 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG----G--E----------------------EDPLEAGQLVVLEDGDE 53 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET----T--T----------------------TEEEETTEEEEE-SECE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC----C--C----------------------cceECCCcEEEECCCce
Confidence 3578888884 3443234568999999998763 1 1 14688999999887777
Q ss_pred EEEEcC
Q 048197 163 NWIYND 168 (480)
Q Consensus 163 h~~~N~ 168 (480)
..+.+.
T Consensus 54 i~~~a~ 59 (104)
T PF05726_consen 54 IELTAG 59 (104)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 766665
No 132
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=80.95 E-value=24 Score=32.13 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=63.7
Q ss_pred CCCeEEEEEecCCCCccc------ccceeEEeeeeccccccccccccCCceEEEEEEe-eEEEEEEecCCce---EEeee
Q 048197 325 PRGGRVTTVNRFNLPILR------YIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRG-NGRMQIVAENGEN---VFDGQ 394 (480)
Q Consensus 325 ~~~G~i~~~~~~~~P~L~------~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G-~grv~vv~~~G~~---~f~~~ 394 (480)
|+||..+.+......+.. ..-+++-..-|.++.+..-|=. +++|+-|...| ..++-+++++|+. ++-.+
T Consensus 14 pEGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d 92 (139)
T PF06172_consen 14 PEGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPD 92 (139)
T ss_dssp TTSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESST
T ss_pred CCCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCC
Confidence 367777666644332221 1235666667888877755552 89999999999 5899999999972 34345
Q ss_pred cCCcc--EEEECCCcEEEEE-cCCCCeEEEEEEe
Q 048197 395 IREGQ--LIVVPQGFAVVKR-ASNRGLEWISFKT 425 (480)
Q Consensus 395 l~~Gd--V~vVPqg~~~~~~-ag~e~l~~v~f~t 425 (480)
+.+|+ .++||.|....-. ....+..+++-..
T Consensus 93 ~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvsc~V 126 (139)
T PF06172_consen 93 LAAGERPQVVVPAGTWQAAELEPEGDYSLVSCTV 126 (139)
T ss_dssp TCTTEBSEEEE-TTSEEEEEECESSSEEEEEEEE
T ss_pred CCCCceEEEEECCCEEEEccccCCCCEEEEEEEE
Confidence 66675 5799999887653 3455666665443
No 133
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=80.58 E-value=2.1 Score=44.83 Aligned_cols=70 Identities=20% Similarity=0.429 Sum_probs=48.6
Q ss_pred eeccccccccccccCCceEEEEEEeeE--EEEEEecC----------------CceEEeeecCCccEEEECCCcEEEEEc
Q 048197 352 NLYQNAMMAPHWNLNAHSVVYITRGNG--RMQIVAEN----------------GENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 352 ~L~pgam~~PHwh~nA~ei~yV~~G~g--rv~vv~~~----------------G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
-..+||=+-|||-.. =+|.++|.| |.+|-... +....+..+.+|||+|||++++|+=++
T Consensus 125 ~a~~GGgvg~H~D~Y---DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gva 201 (383)
T COG2850 125 FAAPGGGVGPHFDQY---DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVA 201 (383)
T ss_pred EecCCCccCccccch---heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcc
Confidence 567999999999432 356677766 45554321 122445678999999999999999888
Q ss_pred CCCCeEE-EEEE
Q 048197 414 SNRGLEW-ISFK 424 (480)
Q Consensus 414 g~e~l~~-v~f~ 424 (480)
-++-+.| |+|.
T Consensus 202 e~dc~tySvG~r 213 (383)
T COG2850 202 EDDCMTYSVGFR 213 (383)
T ss_pred cccccceeeecc
Confidence 7655666 4454
No 134
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=80.10 E-value=15 Score=30.58 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=44.4
Q ss_pred cccccccccccCCceE--EEEEEeeEEEEEEecCCc----eEEeeecCCccEEEECCCcEEEEEcCCCCeEE
Q 048197 355 QNAMMAPHWNLNAHSV--VYITRGNGRMQIVAENGE----NVFDGQIREGQLIVVPQGFAVVKRASNRGLEW 420 (480)
Q Consensus 355 pgam~~PHwh~nA~ei--~yV~~G~grv~vv~~~G~----~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~ 420 (480)
|-+++..|- +.+..| +-|++|+.++...+++|. .++ +.+|+..+||....|.+..-++++++
T Consensus 12 P~~l~~~H~-TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~---~~~~~~~~i~Pq~wH~V~p~s~D~~f 79 (82)
T PF09313_consen 12 PAALLERHN-TKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVF---IPAGQPPVIEPQQWHRVEPLSDDLRF 79 (82)
T ss_dssp -GGGGSSBC-CSTTEEEEEEEEESEEEEEEESSTT-SESEEEE---EETTEEEEE-TT-EEEEEESSTT-EE
T ss_pred cHHHHhhcC-CCCCeEEEEEEEeeEEEEEEECCCCCceeEEEE---eCCCCCceeCCCceEEEEECCCCEEE
Confidence 456677784 676554 678999999999999865 233 78999999999999998765555654
No 135
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=79.89 E-value=11 Score=36.57 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=50.1
Q ss_pred ccCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEe
Q 048197 78 CANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVAL 157 (480)
Q Consensus 78 ~~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~i 157 (480)
.++..+....+++|-++...-..++.++||++|...+..+.+++.+.. +.-+.+||++-.
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--------------------~~~~~~Gd~fG~ 92 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--------------------GAFHLPGDVFGL 92 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--------------------EEEecCCceecc
Confidence 346677778899998877776778999999999999998877665421 456789999987
Q ss_pred CCCCE
Q 048197 158 PTGSA 162 (480)
Q Consensus 158 PaG~~ 162 (480)
..+.+
T Consensus 93 ~~~~~ 97 (230)
T PRK09391 93 ESGST 97 (230)
T ss_pred cCCCc
Confidence 66543
No 136
>PLN02658 homogentisate 1,2-dioxygenase
Probab=79.66 E-value=10 Score=40.74 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=49.9
Q ss_pred CcccccceeEEeeeeccccc-cccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCC
Q 048197 339 PILRYIQLSAEKGNLYQNAM-MAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRG 417 (480)
Q Consensus 339 P~L~~l~lsa~~v~L~pgam-~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~ 417 (480)
|.++. ||++....... .| -.--+|.++++++|+.+|.+++.=-. |. + ++++||++|||+|.-+.+.--+..
T Consensus 120 ~~~~~-G~ai~iy~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L--~v~pgei~VIPRG~~frv~l~~gp 191 (435)
T PLN02658 120 PFLRH-GYAIHMYVANK-SMDDCAFCNADGDFLIVPQQGRLWIKTEL--GK--L--QVSPGEIVVIPRGFRFAVDLPDGP 191 (435)
T ss_pred ccccc-CcEEEEEeCCC-CCccceeecCCCCEEEEEEeCCEEEEEec--cc--e--EecCCCEEEecCccEEEEecCCCC
Confidence 44442 45444333333 55 34477888899999999999876544 43 3 589999999999998776532334
Q ss_pred eEEEE
Q 048197 418 LEWIS 422 (480)
Q Consensus 418 l~~v~ 422 (480)
...+.
T Consensus 192 ~rgyv 196 (435)
T PLN02658 192 SRGYV 196 (435)
T ss_pred eeEEE
Confidence 44433
No 137
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=77.54 E-value=13 Score=37.90 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=44.6
Q ss_pred ccCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEe
Q 048197 78 CANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVAL 157 (480)
Q Consensus 78 ~~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~i 157 (480)
|...++.++++... ..+. -.+...+++|++|++++.. .+ + ...|++|++++|
T Consensus 232 ~~~F~~~~~~~~~~-~~~~-~~~~~~il~v~~G~~~i~~--~~--~----------------------~~~l~~G~~~~i 283 (302)
T TIGR00218 232 TEYFSVYKWDISGK-AEFI-QQQSALILSVLEGSGRIKS--GG--K----------------------TLPLKKGESFFI 283 (302)
T ss_pred CCCeEEEEEEeCCc-eeec-cCCCcEEEEEEcceEEEEE--CC--E----------------------EEEEecccEEEE
Confidence 34566677777654 2111 1357899999999999853 22 1 358999999999
Q ss_pred CCCCEEEEEcCCCCcE
Q 048197 158 PTGSANWIYNDGPSEL 173 (480)
Q Consensus 158 PaG~~h~~~N~G~~~l 173 (480)
||+.-.+.. .|+..+
T Consensus 284 pa~~~~~~i-~g~~~~ 298 (302)
T TIGR00218 284 PAHLGPFTI-EGECEA 298 (302)
T ss_pred ccCCccEEE-EeeEEE
Confidence 999865544 344433
No 138
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=77.47 E-value=6.9 Score=39.04 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=33.3
Q ss_pred cCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc
Q 048197 365 LNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 365 ~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
+++..+.|+++|.+.+.+ + +. .+ .+++||+++||+|.+|....
T Consensus 47 ~~~~~i~~~~~G~~~~~~-~--~~-~~--~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 47 MKGYILNLTIRGQGVIFN-G--GR-AF--VCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred ccceEEEEEEeccEEEec-C--Ce-eE--ecCCCCEEEECCCCceeecc
Confidence 455689999999998742 2 23 34 69999999999999987543
No 139
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=77.23 E-value=3.3 Score=38.42 Aligned_cols=44 Identities=32% Similarity=0.592 Sum_probs=36.0
Q ss_pred ccCCHHHHHhhcCCCHHHHHHhcccc------ccceeEEEeccceeccCC
Q 048197 236 RGFDERLLAEAFNVNPDLISKLQRPQ------MQKGIIVRVEEELRVLSP 279 (480)
Q Consensus 236 ~gf~~~~La~af~v~~~~~~kl~~~~------~~rg~Iv~v~~~l~~~~P 279 (480)
...+++-+|+.|+++.+.+++|+..+ |+-|.|+.|+.+...+.|
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~kiltVh~De~G~Ii~V~~~~~~p~p 146 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSGSCLTLYNDEHGHIIDVKEGLQLPEP 146 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhCCeEEEEECCCCCEEEeecCCCCCCc
Confidence 46799999999999999999998765 567899999876554433
No 140
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=75.49 E-value=9.5 Score=40.96 Aligned_cols=61 Identities=13% Similarity=0.185 Sum_probs=43.8
Q ss_pred ceeEEeeeeccccc-cccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEE
Q 048197 345 QLSAEKGNLYQNAM-MAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKR 412 (480)
Q Consensus 345 ~lsa~~v~L~pgam-~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ 412 (480)
||++....... .| -.--+|.++++++|+.+|.++++--. |. + .+++||++|||+|..+.+.
T Consensus 126 G~ai~iy~~~~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L--~v~pgei~VIPRG~~frv~ 187 (429)
T TIGR01015 126 GLAIHIYLCNA-SMENRAFYNADGDFLIVPQQGALLITTEF--GR--L--LVEPNEICVIPRGVRFRVT 187 (429)
T ss_pred CceEEEEeCCC-CcccceeeccCCCEEEEEEeCcEEEEEec--cc--e--EecCCCEEEecCccEEEEe
Confidence 45544433333 55 55566777889999999998876544 43 3 5899999999999987764
No 141
>PLN02288 mannose-6-phosphate isomerase
Probab=74.87 E-value=7.7 Score=41.41 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=40.8
Q ss_pred CeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
..++.++++.++.-....-.+.+.++.|++|++++.. .+. .+...+++|++++||+
T Consensus 333 eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~--~~~----------------------~~~~~l~~G~~~fv~a 388 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST--GSS----------------------EDGTAAKRGDVFFVPA 388 (394)
T ss_pred ceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec--CCc----------------------cceEEEeceeEEEEeC
Confidence 4556677787765322112568999999999999852 111 0135799999999999
Q ss_pred CCEE
Q 048197 160 GSAN 163 (480)
Q Consensus 160 G~~h 163 (480)
+...
T Consensus 389 ~~~~ 392 (394)
T PLN02288 389 GTEI 392 (394)
T ss_pred CCcc
Confidence 8653
No 142
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=72.89 E-value=11 Score=35.28 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=38.8
Q ss_pred eeecccccccccccc-CCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEEC
Q 048197 351 GNLYQNAMMAPHWNL-NAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVP 404 (480)
Q Consensus 351 v~L~pgam~~PHwh~-nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVP 404 (480)
+.+.+|-+.---=-| .++.+.+|++|..++...+++|+...-.-+.+||+|=-+
T Consensus 9 ~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 9 VTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred eEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 445555443222213 467899999999999999999997666678999987543
No 143
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=72.69 E-value=17 Score=30.67 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=39.4
Q ss_pred EEEcCCeeecCcccCC---CeEEEEE--eceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCC
Q 048197 86 HRIQQRGLVVPSYTNT---PELFYVV--QGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTG 160 (480)
Q Consensus 86 ~~i~p~gl~lPh~~~a---~el~yV~--~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG 160 (480)
...++|+...+|.|.. .-++||- .+.+.+.+..|.....+..+.... ..............++||++++|+-
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~G~lvlFPs~ 81 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNY---DQNDLNSPYYIVEPEEGDLVLFPSW 81 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----T---TTTCCC-SEEEE---TTEEEEEETT
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceeccccccc---ccCcccCceEEeCCCCCEEEEeCCC
Confidence 4567899999999864 3455664 234445555554322221110000 0001112223568999999999999
Q ss_pred CEEEEEc-CCCCcEEEEE
Q 048197 161 SANWIYN-DGPSELVVVA 177 (480)
Q Consensus 161 ~~h~~~N-~G~~~l~~v~ 177 (480)
+.|+..- .++++=+.|+
T Consensus 82 l~H~v~p~~~~~~Risis 99 (101)
T PF13759_consen 82 LWHGVPPNNSDEERISIS 99 (101)
T ss_dssp SEEEE----SSS-EEEEE
T ss_pred CEEeccCcCCCCCEEEEE
Confidence 9999865 3454444443
No 144
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=71.37 E-value=22 Score=34.43 Aligned_cols=82 Identities=13% Similarity=-0.001 Sum_probs=56.9
Q ss_pred ccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEE--EEEcCCCCe
Q 048197 341 LRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAV--VKRASNRGL 418 (480)
Q Consensus 341 L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~--~~~ag~e~l 418 (480)
...++..+....+.+|-+.--.= -.++.+.+|++|.+++...+++|+..+-.-+.+||+|-...+.++ ...+ -++.
T Consensus 31 ~~~~~~~~~~~~~~kge~l~~~G-d~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A-~~ds 108 (230)
T PRK09391 31 SGHAGLVASEFSYKKGEEIYGEG-EPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEA-IVDT 108 (230)
T ss_pred hccccceeeeEEECCCCEEECCC-CCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEE-cCce
Confidence 34456778888888887765443 346788999999999999999998655556789998866554432 2233 2445
Q ss_pred EEEEEE
Q 048197 419 EWISFK 424 (480)
Q Consensus 419 ~~v~f~ 424 (480)
+++.|.
T Consensus 109 ~v~~i~ 114 (230)
T PRK09391 109 TVRLIK 114 (230)
T ss_pred EEEEEE
Confidence 666554
No 145
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=71.27 E-value=37 Score=29.00 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=48.4
Q ss_pred eeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEEE
Q 048197 346 LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFK 424 (480)
Q Consensus 346 lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f~ 424 (480)
-....+.+.||- -++++.+.|++=|+.|...|.+-.... . ..+.+|+-|.||++--+-+... +...++|.+
T Consensus 23 ~~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~e-w---~~~~aGesF~VpanssF~v~v~-~~~~Y~C~y 93 (94)
T PF06865_consen 23 SKKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLPGEDE-W---QTYSAGESFEVPANSSFDVKVK-EPTAYLCSY 93 (94)
T ss_dssp EEEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEETT-SS-----EEEETT-EEEE-TTEEEEEEES-S-EEEEEEE
T ss_pred CcceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCcc-c---EEeCCCCeEEECCCCeEEEEEC-cceeeEEEe
Confidence 445556677776 577788999999999999998876542 2 2588999999999988776553 467777643
No 146
>PRK10579 hypothetical protein; Provisional
Probab=71.01 E-value=37 Score=29.05 Aligned_cols=69 Identities=9% Similarity=0.092 Sum_probs=51.8
Q ss_pred eEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEE
Q 048197 347 SAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423 (480)
Q Consensus 347 sa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f 423 (480)
-...+.+.||- -++.+.+.|++=|+.|...|.+-..+.= ..+++|+-|.||.+--+-+... +...++|.
T Consensus 24 ~kTlGVm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~ew----~~~~aG~sF~VpanssF~l~v~-~~t~Y~C~ 92 (94)
T PRK10579 24 RASVGVMAEGE---YTFSTAEPEEMTVISGALNVLLPGATDW----QVYEAGEVFNVPGHSEFHLQVA-EPTSYLCR 92 (94)
T ss_pred eeEEEEEeeeE---EEEcCCCcEEEEEEeeEEEEECCCCccc----EEeCCCCEEEECCCCeEEEEEC-cceeeEEE
Confidence 34455666765 5788889999999999999988776432 2588999999999988766543 35666664
No 147
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=70.91 E-value=13 Score=29.22 Aligned_cols=51 Identities=8% Similarity=0.156 Sum_probs=38.4
Q ss_pred EEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEE
Q 048197 86 HRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVA 156 (480)
Q Consensus 86 ~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~ 156 (480)
.++.+|..+...-...+.++||++|...+-....+..+. .+..+.+||++-
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~--------------------~~~~~~~g~~~g 52 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ--------------------IIFFLGPGDIFG 52 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE--------------------EEEEEETTEEES
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee--------------------eecceeeecccc
Confidence 356777777777777899999999999999876654321 257888998873
No 148
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=70.39 E-value=57 Score=30.65 Aligned_cols=79 Identities=6% Similarity=-0.122 Sum_probs=53.1
Q ss_pred eeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCc---e--EE--eeecCCccEEEECCCcEEEE-EcC-CC
Q 048197 346 LSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGE---N--VF--DGQIREGQLIVVPQGFAVVK-RAS-NR 416 (480)
Q Consensus 346 lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~---~--~f--~~~l~~GdV~vVPqg~~~~~-~ag-~e 416 (480)
+.+..+.-.||--..+|=|..++-++.|++|+.+-+.+..... . .. ...+..|.+++++.+..|-+ +++ ++
T Consensus 75 ~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~~ 154 (175)
T PF05995_consen 75 FELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGDE 154 (175)
T ss_dssp -EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SSS
T ss_pred eEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCCC
Confidence 5566678899999999999999999999999999988876543 1 11 12367888888899999988 555 56
Q ss_pred CeEEEEEE
Q 048197 417 GLEWISFK 424 (480)
Q Consensus 417 ~l~~v~f~ 424 (480)
.+.-|-+.
T Consensus 155 ~avSLHvY 162 (175)
T PF05995_consen 155 PAVSLHVY 162 (175)
T ss_dssp -EEEEEEE
T ss_pred CEEEEEEc
Confidence 55544444
No 149
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=68.93 E-value=88 Score=29.06 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=54.6
Q ss_pred eEEeeeeccccccccccccC-CceEEEEEEee-EEEEEEecCCce---EEeeecCCccE--EEECCC-cE-EEEEcCCCC
Q 048197 347 SAEKGNLYQNAMMAPHWNLN-AHSVVYITRGN-GRMQIVAENGEN---VFDGQIREGQL--IVVPQG-FA-VVKRASNRG 417 (480)
Q Consensus 347 sa~~v~L~pgam~~PHwh~n-A~ei~yV~~G~-grv~vv~~~G~~---~f~~~l~~GdV--~vVPqg-~~-~~~~ag~e~ 417 (480)
.+-..-|++.. --|||-+ |+|+.++..|. ..+.++. +|.. ++--.++.|.+ +|||.| |. .....++ +
T Consensus 45 T~IYyLLe~~~--~s~~HRv~a~eiwHf~ag~pl~~~l~~-dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w~aS~~~~g~-~ 120 (162)
T COG3542 45 TAIYYLLEEDN--ISAWHRVTADEIWHFYAGAPLELHLSE-DGGAESFTLGPDLEKGERPQYVVPAGTWWASAVSLGE-D 120 (162)
T ss_pred EEEEEEecCCc--cchheecchhheEEEecCCceEEEEEe-CCCeEEEEecccccCCceeEEEEeCCcEEEEEEecCC-C
Confidence 34445567777 4589987 89988888775 7777777 6652 22346788887 599999 33 2333343 4
Q ss_pred eEEEEEEecC--CCcceeeccccccccC
Q 048197 418 LEWISFKTND--VAKTSQLAGRASVIRG 443 (480)
Q Consensus 418 l~~v~f~ts~--~~~~~~LAG~~svl~~ 443 (480)
..+|+-.... ....+.||-...+|..
T Consensus 121 ~tLVgCtVaPGFdF~~Fela~~~dlL~~ 148 (162)
T COG3542 121 YTLVGCTVAPGFDFEDFELAEPEDLLKW 148 (162)
T ss_pred ceEEEEEecCCccchhccccCchhhhhc
Confidence 4455433322 2234445533344443
No 150
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=68.55 E-value=13 Score=29.21 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=30.1
Q ss_pred CceEEEEEEeeEEEEEEecCCceEEeeecCCccEE
Q 048197 367 AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLI 401 (480)
Q Consensus 367 A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~ 401 (480)
.+.+.||++|..++...+.+|+......+.+||++
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 77999999999999999999886545578888887
No 151
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=68.07 E-value=40 Score=30.02 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=25.2
Q ss_pred eEeecCCcEEEeCCCCEEEEEcCCCCcEEEEE
Q 048197 146 VRQIREGDLVALPTGSANWIYNDGPSELVVVA 177 (480)
Q Consensus 146 ~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~ 177 (480)
...+.+||+++++++.++.+.-.++.....+.
T Consensus 74 ~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~ 105 (172)
T PF14525_consen 74 EVELAPGDVVLLDPGQPYRLEFSAGCRQLSLR 105 (172)
T ss_pred EEEEcCCeEEEEcCCCCEEEEECCCccEEEEE
Confidence 36999999999999999888766565555443
No 152
>PLN02288 mannose-6-phosphate isomerase
Probab=68.06 E-value=12 Score=40.06 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=39.8
Q ss_pred ceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcE
Q 048197 345 QLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFA 408 (480)
Q Consensus 345 ~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~ 408 (480)
..++.++.|.++.-.. ..-.+..+|+.|++|++++.. ..+...+ .|++|++++||++..
T Consensus 333 eF~v~~~~l~~~~~~~-~~~~~gp~Illv~~G~~~i~~--~~~~~~~--~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 333 EFEVDHCDVPPGASVV-FPAVPGPSVFLVIEGEGVLST--GSSEDGT--AAKRGDVFFVPAGTE 391 (394)
T ss_pred ceEEEEEEeCCCCeEe-ecCCCCCEEEEEEcCEEEEec--CCccceE--EEeceeEEEEeCCCc
Confidence 3677777887765321 111457799999999998742 2222223 599999999998754
No 153
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=65.97 E-value=33 Score=31.90 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=39.9
Q ss_pred EEEEcCCeeecCccc--CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 85 RHRIQQRGLVVPSYT--NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 85 r~~i~p~gl~lPh~~--~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
.+.+++|..+.-.-- .+..+++|++|..++-...+++.+.. +.-+.+||+|-.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--------------------l~~~~~Gd~~G~~ 63 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--------------------LRYVRPGEYFGEE 63 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--------------------EEEecCCCeechH
Confidence 456777776555444 56889999999999999887765531 4677999998654
No 154
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.73 E-value=46 Score=35.06 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=43.4
Q ss_pred cCeeEEEEEEcCCeeecCccc--CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEE
Q 048197 79 ANVAVFRHRIQQRGLVVPSYT--NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVA 156 (480)
Q Consensus 79 ~gvs~~r~~i~p~gl~lPh~~--~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~ 156 (480)
.||++.-..++.. +.--+|- +-++|+|+.+|+.++-... | +-.|++||+-+
T Consensus 123 ~g~~i~~y~~n~s-m~~~~f~NADge~Livpq~G~l~l~te~-G-------------------------~l~v~pgeiav 175 (427)
T COG3508 123 DGVAIHVYKVNES-MTKRFFRNADGELLIVPQQGELRLKTEL-G-------------------------VLEVEPGEIAV 175 (427)
T ss_pred CceEEEEEEcccc-chhhhhhcCCCCEEEEeecceEEEEEee-c-------------------------eEEecCCcEEE
Confidence 4666554444433 3323343 4579999999998875432 1 46999999999
Q ss_pred eCCCCEEEEEcC
Q 048197 157 LPTGSANWIYND 168 (480)
Q Consensus 157 iPaG~~h~~~N~ 168 (480)
||.|+.+-+.=.
T Consensus 176 IPRG~~frve~~ 187 (427)
T COG3508 176 IPRGTTFRVELK 187 (427)
T ss_pred eeCCceEEEEec
Confidence 999999877653
No 155
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=65.02 E-value=42 Score=31.37 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=41.5
Q ss_pred EEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 83 VFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 83 ~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
+...++++|.++...=..++.+++|++|...+-...+++.+. -+..+.+||++-..
T Consensus 20 ~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~--------------------~~~~~~~g~~~g~~ 75 (211)
T PRK11753 20 CHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEM--------------------ILSYLNQGDFIGEL 75 (211)
T ss_pred CeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEE--------------------EEEEcCCCCEEeeh
Confidence 346688888877655556889999999999987766654432 15688999998543
No 156
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.80 E-value=5.7 Score=43.06 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=47.4
Q ss_pred EEEcC-Ce-eecCcccCCCeEEEEEeceEEEEEEcCCCccc--hhhhhhc-ccccccccccccceeEeecCCcEEEeCCC
Q 048197 86 HRIQQ-RG-LVVPSYTNTPELFYVVQGRGIHGAVFPGCPET--YQESQQR-SSESQSRSQDQHQKVRQIREGDLVALPTG 160 (480)
Q Consensus 86 ~~i~p-~g-l~lPh~~~a~el~yV~~G~g~~g~v~pg~~et--f~~~~~~-~~~~~~~~~d~~qk~~~l~~GDV~~iPaG 160 (480)
+-|.| |+ =+.|||-+-...+.=++|+=..-+-.|-.|.. +..+..- .+.+-.+ --| ..-|++||+++||.|
T Consensus 321 vYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlge--PV~--e~vle~GDllYfPRG 396 (629)
T KOG3706|consen 321 VYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGE--PVH--EFVLEPGDLLYFPRG 396 (629)
T ss_pred eeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCC--chH--HhhcCCCcEEEecCc
Confidence 44444 33 36899999888888899998888888876531 1100000 0000001 011 257999999999999
Q ss_pred CEEEE
Q 048197 161 SANWI 165 (480)
Q Consensus 161 ~~h~~ 165 (480)
.+|-.
T Consensus 397 ~IHQA 401 (629)
T KOG3706|consen 397 TIHQA 401 (629)
T ss_pred ceeec
Confidence 99955
No 157
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=63.11 E-value=23 Score=28.52 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=38.5
Q ss_pred EEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 84 FRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 84 ~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
...++++|..+...=...+.++||++|...+-...+++.+. .+..+.+||++-.+
T Consensus 18 ~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~--------------------~~~~~~~g~~~g~~ 72 (115)
T cd00038 18 EERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQ--------------------IVGFLGPGDLFGEL 72 (115)
T ss_pred eeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEE--------------------EEEecCCccCcChH
Confidence 34567888776544455788999999999987765543321 26788999988543
No 158
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=62.25 E-value=50 Score=32.96 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=46.9
Q ss_pred CeeEEEEEEcCCeee-cCccc-----CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCc
Q 048197 80 NVAVFRHRIQQRGLV-VPSYT-----NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGD 153 (480)
Q Consensus 80 gvs~~r~~i~p~gl~-lPh~~-----~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GD 153 (480)
++.+.++...|..+. .+... +.-.++++++|.+.+.. .| +...+++||
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~--~g------------------------~~~~l~~G~ 97 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ--DD------------------------RQVQLAAGD 97 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE--CC------------------------eEEEEcCCC
Confidence 677777777765433 22321 22346677889888764 12 246899999
Q ss_pred EEEeCCCCEEEEEcCCCCcEEEE
Q 048197 154 LVALPTGSANWIYNDGPSELVVV 176 (480)
Q Consensus 154 V~~iPaG~~h~~~N~G~~~l~~v 176 (480)
++++|++.+|.+.-.++.....+
T Consensus 98 ~~l~~~~~p~~~~~~~~~~~~~l 120 (302)
T PRK09685 98 ITLIDASRPCSIYPQGLSEQISL 120 (302)
T ss_pred EEEEECCCCcEeecCCCceeEEE
Confidence 99999999998876555444333
No 159
>PRK10579 hypothetical protein; Provisional
Probab=62.22 E-value=70 Score=27.36 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=37.1
Q ss_pred cCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcC
Q 048197 99 TNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYND 168 (480)
Q Consensus 99 ~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~ 168 (480)
+.++|+.=|+.|...+-+ ||-.+ -..+++|+.|-||+...+-+.-.
T Consensus 39 T~~~E~MeivsG~l~V~L--pg~~e----------------------w~~~~aG~sF~VpanssF~l~v~ 84 (94)
T PRK10579 39 TAEPEEMTVISGALNVLL--PGATD----------------------WQVYEAGEVFNVPGHSEFHLQVA 84 (94)
T ss_pred CCCcEEEEEEeeEEEEEC--CCCcc----------------------cEEeCCCCEEEECCCCeEEEEEC
Confidence 469999999999988765 76543 36899999999999998877553
No 160
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.99 E-value=27 Score=36.67 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=44.1
Q ss_pred CcccccceeEEeeeecccccc-ccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEE
Q 048197 339 PILRYIQLSAEKGNLYQNAMM-APHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVK 411 (480)
Q Consensus 339 P~L~~l~lsa~~v~L~pgam~-~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~ 411 (480)
+.+..-||++..-.+ .-+|. .-.+|.+..+++|+..|+.+ +++.-| ++ +|++||+.|||+|..+..
T Consensus 118 ~~~~~~g~~i~~y~~-n~sm~~~~f~NADge~Livpq~G~l~--l~te~G--~l--~v~pgeiavIPRG~~frv 184 (427)
T COG3508 118 DADTQDGVAIHVYKV-NESMTKRFFRNADGELLIVPQQGELR--LKTELG--VL--EVEPGEIAVIPRGTTFRV 184 (427)
T ss_pred CccccCceEEEEEEc-cccchhhhhhcCCCCEEEEeecceEE--EEEeec--eE--EecCCcEEEeeCCceEEE
Confidence 344444565543333 44566 56666666788888888765 444445 34 699999999999988664
No 161
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=61.84 E-value=23 Score=28.48 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=38.4
Q ss_pred EeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEEC
Q 048197 349 EKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVP 404 (480)
Q Consensus 349 ~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVP 404 (480)
....+.+|.+.--. +...+.+.|+++|...+...+++|+..+-..+.+|+++-.+
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGEL 72 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChH
Confidence 34455555544111 12357899999999999999998877666778899987443
No 162
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=61.43 E-value=8.5 Score=37.48 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=38.1
Q ss_pred CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEc
Q 048197 100 NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYN 167 (480)
Q Consensus 100 ~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N 167 (480)
..+|++|-.+|...+-++..|..+ | --+++||++.+|+-++|.=.-
T Consensus 52 egeE~FyQ~KGdMvLKVie~g~~r-----------------D-----ivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 52 EGEEVFYQLKGDMVLKVLEQGKHR-----------------D-----VVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred CcchhheeecCceEEeeeccCcce-----------------e-----eEEecCcEEEeccCCCCChhh
Confidence 589999999999999999766432 1 478999999999999997543
No 163
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=61.14 E-value=86 Score=26.84 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=36.3
Q ss_pred cCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEcCCCCcEEEEE
Q 048197 99 TNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYNDGPSELVVVA 177 (480)
Q Consensus 99 ~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~ 177 (480)
+.++|+.=|+.|...+-+ ||-.+ -..+++|+.|.||+...+-+.-. ++...+|
T Consensus 39 T~~~E~M~vvsG~l~V~l--pg~~e----------------------w~~~~aGesF~VpanssF~v~v~--~~~~Y~C 91 (94)
T PF06865_consen 39 TSAPERMEVVSGELEVKL--PGEDE----------------------WQTYSAGESFEVPANSSFDVKVK--EPTAYLC 91 (94)
T ss_dssp ESS-EEEEEEESEEEEEE--TT-SS-----------------------EEEETT-EEEE-TTEEEEEEES--S-EEEEE
T ss_pred CCCCEEEEEEEeEEEEEc--CCCcc----------------------cEEeCCCCeEEECCCCeEEEEEC--cceeeEE
Confidence 369999999999988876 76433 36899999999999998877653 3444444
No 164
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=60.56 E-value=49 Score=28.78 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=41.1
Q ss_pred CCeeecCccc-CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCC--CEEEEE
Q 048197 90 QRGLVVPSYT-NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTG--SANWIY 166 (480)
Q Consensus 90 p~gl~lPh~~-~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG--~~h~~~ 166 (480)
+.++ -+|-| +-.-+.||++|+..-.- .-+ ....|++|||-.+-|| +.|--.
T Consensus 39 ~~gf-~~HPH~g~eivTyv~~G~~~H~D--s~G-----------------------~~~~l~~G~vq~m~AG~Gi~H~E~ 92 (107)
T PF02678_consen 39 GAGF-PMHPHRGFEIVTYVLEGELRHRD--SLG-----------------------NRGVLRAGDVQWMTAGSGIVHSER 92 (107)
T ss_dssp TTEE-EEEEECSEEEEEEEEESEEEEEE--TTS-----------------------EEEEEETTEEEEEE-TTTEEEEEE
T ss_pred CCCC-CCcCCCCceEEEEEecCEEEEEC--CCC-----------------------CeeEeCCCeEEEEeCCCCceEEEe
Confidence 4555 44544 67788899999876542 111 1357999999998886 778888
Q ss_pred cCCC-CcEEEEEE
Q 048197 167 NDGP-SELVVVAL 178 (480)
Q Consensus 167 N~G~-~~l~~v~~ 178 (480)
|..+ .++..+-+
T Consensus 93 ~~~~~~~~~~lQl 105 (107)
T PF02678_consen 93 NASDGGPLHGLQL 105 (107)
T ss_dssp E-TSSS-EEEEEE
T ss_pred cCCCCCeEEEEEE
Confidence 8766 77776643
No 165
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=60.53 E-value=37 Score=33.91 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=33.9
Q ss_pred cccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc
Q 048197 361 PHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 361 PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
.|.+...-.++++++|.+++.+ +|+.. .+.+||++++|.+.++....
T Consensus 65 ~~~~~~~~~l~~~~~G~~~~~~---~g~~~---~l~~G~~~l~~~~~p~~~~~ 111 (302)
T PRK09685 65 KHSDDAHFFTVFQLSGHAIIEQ---DDRQV---QLAAGDITLIDASRPCSIYP 111 (302)
T ss_pred ccCCCCcEEEEEEecceEEEEE---CCeEE---EEcCCCEEEEECCCCcEeec
Confidence 4444445568888999888654 33332 59999999999999887644
No 166
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=59.99 E-value=29 Score=30.21 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=44.2
Q ss_pred ccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcE--EEEEcC-C-CCeEEE
Q 048197 356 NAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFA--VVKRAS-N-RGLEWI 421 (480)
Q Consensus 356 gam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~--~~~~ag-~-e~l~~v 421 (480)
++-+.||=|.+-.-+.||++|+.. =.|+.|+.. .|++|||-++=+|-. |...+. + .+++.+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~--H~Ds~G~~~---~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELR--HRDSLGNRG---VLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEE--EEETTSEEE---EEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEE--EECCCCCee---EeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 555689999999999999998664 458888764 599999999988864 555543 3 456554
No 167
>COG1741 Pirin-related protein [General function prediction only]
Probab=59.31 E-value=23 Score=36.01 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=48.1
Q ss_pred eeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcE--EEEEc
Q 048197 350 KGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFA--VVKRA 413 (480)
Q Consensus 350 ~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~--~~~~a 413 (480)
-..+.||.-+.||=|..=.-+.||++|+.+ ==|+-|+.. .+++|||-..=+|.. |...+
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~--HrDS~Gn~~---~i~pGdvqwMTAG~GI~HSE~~ 108 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIE--HRDSLGNKG---VIRPGDVQWMTAGSGIVHSEMN 108 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEE--EeecCCcee---eecccceeEEcCCCceeecccC
Confidence 456889999999999999999999999954 446667765 499999999999986 55554
No 168
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=57.69 E-value=51 Score=31.66 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=42.0
Q ss_pred EEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 85 RHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 85 r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
...+++|-++...=-....+++|++|...+..+...+.+.. +.-+.+||+|-..
T Consensus 33 ~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--------------------~~~~~~g~~~G~~ 86 (226)
T PRK10402 33 LFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--------------------IDFFAAPCFIGEI 86 (226)
T ss_pred heeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--------------------eeecCCCCeEEee
Confidence 34778888877666678899999999999998877665432 5678899998754
No 169
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=57.67 E-value=19 Score=34.67 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=40.7
Q ss_pred CCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCC-----cEEEEEcCCCCeEEEEEE
Q 048197 366 NAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQG-----FAVVKRASNRGLEWISFK 424 (480)
Q Consensus 366 nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg-----~~~~~~ag~e~l~~v~f~ 424 (480)
..+.+.+|++|.+++..++.+|+..+-.-+.+||+|--..- +.+...|. ++.+++.+.
T Consensus 48 ~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~-~~~~i~~i~ 110 (226)
T PRK10402 48 QPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAI-EECWCLALP 110 (226)
T ss_pred CCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEe-ccEEEEEEE
Confidence 46789999999999999999998766567899998864321 22222332 446666664
No 170
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=57.19 E-value=22 Score=37.50 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=45.1
Q ss_pred EEcCCeeecCcccCCCeEEEEEeceEEEEE--Ec-----CCCccchhhhhhccccccccccccc-ce-eEeecCCcEEEe
Q 048197 87 RIQQRGLVVPSYTNTPELFYVVQGRGIHGA--VF-----PGCPETYQESQQRSSESQSRSQDQH-QK-VRQIREGDLVAL 157 (480)
Q Consensus 87 ~i~p~gl~lPh~~~a~el~yV~~G~g~~g~--v~-----pg~~etf~~~~~~~~~~~~~~~d~~-qk-~~~l~~GDV~~i 157 (480)
-..+||-+-|||-..+ +|++||.|+=.+ -- +-|+... ..+-+.. .- ...+.+|||++|
T Consensus 125 ~a~~GGgvg~H~D~YD--VfliQg~G~RRW~v~~~~~~~~~~~~~d-----------~~~~~~f~~~~d~vlepGDiLYi 191 (383)
T COG2850 125 FAAPGGGVGPHFDQYD--VFLIQGQGRRRWRVGKKCNMSTLCPHPD-----------LLILAPFEPDIDEVLEPGDILYI 191 (383)
T ss_pred EecCCCccCccccchh--eeEEeecccceeecCCcccccCcCCCcc-----------hhhcCCCCchhhhhcCCCceeec
Confidence 4578888899997766 456666553322 11 1122000 0000000 00 147899999999
Q ss_pred CCCCEEEEEcCCCCcEEEEEE
Q 048197 158 PTGSANWIYNDGPSELVVVAL 178 (480)
Q Consensus 158 PaG~~h~~~N~G~~~l~~v~~ 178 (480)
|+|.+|+=+..+|..-.-|++
T Consensus 192 Pp~~~H~gvae~dc~tySvG~ 212 (383)
T COG2850 192 PPGFPHYGVAEDDCMTYSVGF 212 (383)
T ss_pred CCCCCcCCcccccccceeeec
Confidence 999999988875544333433
No 171
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=56.96 E-value=33 Score=32.08 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=47.7
Q ss_pred EeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECC----C--cEEEEEcCCCCeEEEE
Q 048197 349 EKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQ----G--FAVVKRASNRGLEWIS 422 (480)
Q Consensus 349 ~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPq----g--~~~~~~ag~e~l~~v~ 422 (480)
....+.+|.+.... .-.++.+.+|++|.+++...+.+|+.+.-..+.+||++-... . +.....+ .++.+++.
T Consensus 21 ~~~~~~kg~~l~~~-g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a-~~~~~v~~ 98 (211)
T PRK11753 21 HIHKYPAKSTLIHA-GEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRA-KTACEVAE 98 (211)
T ss_pred eEEEeCCCCEEEeC-CCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEE-cCcEEEEE
Confidence 34455666555322 234678999999999999888888866666799999984432 1 2222333 34566666
Q ss_pred EE
Q 048197 423 FK 424 (480)
Q Consensus 423 f~ 424 (480)
+.
T Consensus 99 i~ 100 (211)
T PRK11753 99 IS 100 (211)
T ss_pred Ec
Confidence 63
No 172
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=56.83 E-value=25 Score=28.32 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEEC
Q 048197 366 NAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVP 404 (480)
Q Consensus 366 nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVP 404 (480)
.++.+.+|++|..++...+.+|+...-..+.+||++-..
T Consensus 34 ~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 34 VGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred cCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 467899999999999998888887666788999988543
No 173
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=56.55 E-value=10 Score=28.93 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=31.7
Q ss_pred cCCHHHHHhhcCCCHHHHHHhccccccceeEEEeccceecc
Q 048197 237 GFDERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEEELRVL 277 (480)
Q Consensus 237 gf~~~~La~af~v~~~~~~kl~~~~~~rg~Iv~v~~~l~~~ 277 (480)
....+-||+.|+|+..|+++=...=.+.|.|.|+.+|...+
T Consensus 14 ~~s~~ela~~~~VS~~TiRRDl~~L~~~g~i~r~~GG~~~~ 54 (57)
T PF08220_consen 14 KVSVKELAEEFGVSEMTIRRDLNKLEKQGLIKRTHGGAVLN 54 (57)
T ss_pred CEEHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCEEEeC
Confidence 46788999999999999986554444468999988886544
No 174
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=56.19 E-value=78 Score=31.89 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=49.8
Q ss_pred eEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEE-EEeeEEEEEEecCCc---------eEEeeecCC
Q 048197 328 GRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYI-TRGNGRMQIVAENGE---------NVFDGQIRE 397 (480)
Q Consensus 328 G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV-~~G~grv~vv~~~G~---------~~f~~~l~~ 397 (480)
+.+..++..+- .+.. ++...++|.+|.-..-- ....|+.+| +.|.+.|++ +|. .+|+ ..
T Consensus 12 ~~~~~i~~~~~-g~~~--~~~~~l~L~~g~~~~~~--~~~~E~~vv~l~G~~~v~~---~g~~~~~l~~R~~vF~---~~ 80 (261)
T PF04962_consen 12 NLVYSITPENA-GWMY--MGFGVLRLEAGESLEFE--LERRELGVVNLGGKATVTV---DGEEFYELGGRESVFD---GP 80 (261)
T ss_dssp --EEECTCCCC-CCCC--BECCCEEEECCHCCCCC--CCSEEEEEEEESSSEEEEE---TTEEEEEE-TTSSGGG---S-
T ss_pred eEEEEECCCcc-Cccc--cceEEEEecCCCEEecc--CCCcEEEEEEeCCEEEEEe---CCceEEEecccccccC---CC
Confidence 34666665543 3333 44556788887766544 445566554 588999888 231 2331 45
Q ss_pred ccEEEECCCcEEEEEcCCCCeEEEEEEe
Q 048197 398 GQLIVVPQGFAVVKRASNRGLEWISFKT 425 (480)
Q Consensus 398 GdV~vVPqg~~~~~~ag~e~l~~v~f~t 425 (480)
.|.++||.|....+.|. +++++....+
T Consensus 81 ~d~lYvp~g~~~~i~a~-~~ae~~~~sa 107 (261)
T PF04962_consen 81 PDALYVPRGTKVVIFAS-TDAEFAVCSA 107 (261)
T ss_dssp -EEEEE-TT--EEEEES-STEEEEEEEE
T ss_pred CcEEEeCCCCeEEEEEc-CCCEEEEEcc
Confidence 69999999999888774 4477765543
No 175
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=54.90 E-value=9.7 Score=39.34 Aligned_cols=42 Identities=14% Similarity=0.360 Sum_probs=32.3
Q ss_pred CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcC
Q 048197 367 AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAS 414 (480)
Q Consensus 367 A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag 414 (480)
...|++|++|++.+..= |+ ++ .|++|+.++||+...-+.+.|
T Consensus 260 ~~~il~v~eG~~~l~~~---~~-~~--~l~~G~s~~ipa~~~~~~i~g 301 (312)
T COG1482 260 SFSILLVLEGEGTLIGG---GQ-TL--KLKKGESFFIPANDGPYTIEG 301 (312)
T ss_pred CcEEEEEEcCeEEEecC---CE-EE--EEcCCcEEEEEcCCCcEEEEe
Confidence 67999999999987653 33 34 699999999999966554444
No 176
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=53.70 E-value=14 Score=36.07 Aligned_cols=47 Identities=17% Similarity=0.464 Sum_probs=38.4
Q ss_pred ccccC-CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEE
Q 048197 362 HWNLN-AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVV 410 (480)
Q Consensus 362 Hwh~n-A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~ 410 (480)
-||.+ ..||.|-.+|....-|++....+ |-.+++||+|..|+..+|.
T Consensus 47 dyHieegeE~FyQ~KGdMvLKVie~g~~r--DivI~qGe~flLParVpHS 94 (279)
T KOG3995|consen 47 DYHIEEGEEVFYQLKGDMVLKVLEQGKHR--DVVIRQGEIFLLPARVPHS 94 (279)
T ss_pred ccccCCcchhheeecCceEEeeeccCcce--eeEEecCcEEEeccCCCCC
Confidence 46666 57999999999999999974323 4468999999999998876
No 177
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=53.45 E-value=24 Score=32.48 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=31.3
Q ss_pred CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEE
Q 048197 367 AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVV 403 (480)
Q Consensus 367 A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vV 403 (480)
++.+.+|++|.+++...+++|+...-.-+.+||+|-.
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 5678999999999999999998765567999998743
No 178
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=52.61 E-value=57 Score=26.17 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=36.8
Q ss_pred EEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 85 RHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 85 r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
..++.+|-.+.-.=...+.+++|++|...+-....+..+. -+..+.+||++-..
T Consensus 19 ~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~--------------------~~~~~~~g~~~g~~ 72 (120)
T smart00100 19 PVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQ--------------------ILGILGPGDFFGEL 72 (120)
T ss_pred EEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceE--------------------EEEeecCCceechh
Confidence 4567777765444345788999999999887654433221 25788999988554
No 179
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=52.48 E-value=19 Score=37.33 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=26.6
Q ss_pred EEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEE
Q 048197 380 MQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWI 421 (480)
Q Consensus 380 v~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v 421 (480)
.+++++.--+.+ +|++||.++||+|.+|+...| ..+|..
T Consensus 149 ~~~~d~~lLn~v--~lkpGe~~fl~Agt~HA~~~G-~~lEvm 187 (312)
T COG1482 149 GGLFDPLLLNRV--KLKPGEAFFLPAGTPHAYLKG-LVLEVM 187 (312)
T ss_pred ccccchhhhcEE--ecCCCCEEEecCCCceeeccc-eEEEEE
Confidence 444453222344 799999999999999998666 344443
No 180
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=51.28 E-value=43 Score=26.26 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=40.2
Q ss_pred eeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc
Q 048197 352 NLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 352 ~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
.|.||..+. |.+.+...+-|.+|+.-++.-.. .. |.-|++||.+.+|.|--+++.+
T Consensus 3 ~L~~g~~~~--lr~~~~~~l~v~~G~vWlT~~g~-~~---D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 3 ELAPGETLS--LRAAAGQRLRVESGRVWLTREGD-PD---DYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EeCCCceEE--eEcCCCcEEEEccccEEEECCCC-CC---CEEECCCCEEEeCCCCEEEEEe
Confidence 344555443 44666777999999999988443 22 3459999999999998777655
No 181
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=51.11 E-value=1.9e+02 Score=26.26 Aligned_cols=99 Identities=11% Similarity=0.095 Sum_probs=60.2
Q ss_pred cCCceEE-EeCCCChhc------cccCeeEEEEEEcCCeeecCcccCCCeEEEEEec-eEEEEEEcCCCcc-chhhhhhc
Q 048197 61 SEAGVTE-FWDQNDEQL------QCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQG-RGIHGAVFPGCPE-TYQESQQR 131 (480)
Q Consensus 61 se~G~~e-~~~~~~~~l------~~~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G-~g~~g~v~pg~~e-tf~~~~~~ 131 (480)
.|||.+. .|.+....- .....+....-|.++...--|-.+++|+.|...| ...+-++.|++.- ++
T Consensus 14 pEGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~------ 87 (139)
T PF06172_consen 14 PEGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETV------ 87 (139)
T ss_dssp TTSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEE------
T ss_pred CCCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEE------
Confidence 3899884 454322110 0224566666788888877676789999988888 6788888887532 10
Q ss_pred cccccccccccccee-EeecCCc--EEEeCCCCEEEEEcCCCCcEEEEEE
Q 048197 132 SSESQSRSQDQHQKV-RQIREGD--LVALPTGSANWIYNDGPSELVVVAL 178 (480)
Q Consensus 132 ~~~~~~~~~d~~qk~-~~l~~GD--V~~iPaG~~h~~~N~G~~~l~~v~~ 178 (480)
++ .++.+|. .++||+|+-+-..-.+.....+|+.
T Consensus 88 -------------~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvsc 124 (139)
T PF06172_consen 88 -------------VLGPDLAAGERPQVVVPAGTWQAAELEPEGDYSLVSC 124 (139)
T ss_dssp -------------EESSTTCTTEBSEEEE-TTSEEEEEECESSSEEEEEE
T ss_pred -------------EECCCCCCCceEEEEECCCEEEEccccCCCCEEEEEE
Confidence 01 2334453 5899999876665455566666654
No 182
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=50.07 E-value=1.6e+02 Score=29.43 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=64.0
Q ss_pred ecCCceEEEeCCCChhccccCeeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhccccccccc
Q 048197 60 ESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRS 139 (480)
Q Consensus 60 ~se~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~ 139 (480)
..+.|.+...++.+..+.-.|+. -..|.+|...--.-.+-..++.++.|++.+..- | .+|..-. .|.
T Consensus 10 ~~~~g~v~~vtp~sagw~YVGF~--~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~--g--~~f~~iG-------~R~ 76 (270)
T COG3718 10 PAGVGLVQDVTPESAGWEYVGFR--LLRLAAGESATEETGDRERCLVLVTGKATVSAH--G--STFGEIG-------TRM 76 (270)
T ss_pred CCCCcceEEecCCCCCceeEEEE--EEEccCCCcccccCCCceEEEEEEeeeEEEeec--c--chHhhcc-------ccc
Confidence 46778888888887777754444 457888876544445566777889999888752 2 3452211 111
Q ss_pred ccccceeEeecCCcEEEeCCCCEEEEEcCCCCc
Q 048197 140 QDQHQKVRQIREGDLVALPTGSANWIYNDGPSE 172 (480)
Q Consensus 140 ~d~~qk~~~l~~GDV~~iPaG~~h~~~N~G~~~ 172 (480)
.+++=++=|.+++|+|.+..+-.+.+-+
T Consensus 77 -----SvFe~~p~~~vYvp~g~~~~vtA~t~~~ 104 (270)
T COG3718 77 -----SVFERKPPDSVYVPAGSAFSVTATTDLE 104 (270)
T ss_pred -----ccccCCCCCeEEecCCceEEEEeecceE
Confidence 1455567799999999999998876653
No 183
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=47.59 E-value=93 Score=24.35 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=39.7
Q ss_pred EEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEE
Q 048197 87 RIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIY 166 (480)
Q Consensus 87 ~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~ 166 (480)
+|.|+..+... ..+...+-|.+|+.-++. .|+++ | +-|++||.+.+|+|--.|+.
T Consensus 3 ~L~~g~~~~lr-~~~~~~l~v~~G~vWlT~--~g~~~-----------------D-----~~L~~G~~l~l~~g~~vvl~ 57 (63)
T PF11142_consen 3 ELAPGETLSLR-AAAGQRLRVESGRVWLTR--EGDPD-----------------D-----YWLQAGDSLRLRRGGRVVLS 57 (63)
T ss_pred EeCCCceEEeE-cCCCcEEEEccccEEEEC--CCCCC-----------------C-----EEECCCCEEEeCCCCEEEEE
Confidence 45555543322 234555889999998876 34433 2 68999999999999999886
Q ss_pred c
Q 048197 167 N 167 (480)
Q Consensus 167 N 167 (480)
.
T Consensus 58 a 58 (63)
T PF11142_consen 58 A 58 (63)
T ss_pred e
Confidence 5
No 184
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=44.49 E-value=1.3e+02 Score=29.77 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=42.6
Q ss_pred EEEEcCCeeecCcccCCCeEEEEEeceEE--EEEEcCCCccchhhhh--h-cccccccccccccceeEeecCCcEEEeCC
Q 048197 85 RHRIQQRGLVVPSYTNTPELFYVVQGRGI--HGAVFPGCPETYQESQ--Q-RSSESQSRSQDQHQKVRQIREGDLVALPT 159 (480)
Q Consensus 85 r~~i~p~gl~lPh~~~a~el~yV~~G~g~--~g~v~pg~~etf~~~~--~-~~~~~~~~~~d~~qk~~~l~~GDV~~iPa 159 (480)
-+.+.++-+..-|+|..-.-=.|-+|-|. +.+-..+-.+.+-... . .-.+..+... .- ..-+|.+|.-|-+|+
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~-aG-~~l~L~PGESiTL~P 168 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVP-AG-TQLRLNPGESITLPP 168 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE--TT--EEEE-TT-EEEE-T
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEec-CC-ceEEeCCCCeEeeCC
Confidence 35667888888888865444455665443 4443221100000000 0 0000000000 00 135899999999999
Q ss_pred CCEEEEEcCCCCcEEEEEEeeCCCCC
Q 048197 160 GSANWIYNDGPSELVVVALVDVGNSD 185 (480)
Q Consensus 160 G~~h~~~N~G~~~l~~v~~~d~~n~~ 185 (480)
|.-||++-.+.. ++|+=+.+.|..
T Consensus 169 g~yH~Fw~e~g~--vLigEVStvNDD 192 (225)
T PF07385_consen 169 GIYHWFWGEGGD--VLIGEVSTVNDD 192 (225)
T ss_dssp TEEEEEEE-TTS--EEEEEEEE---T
T ss_pred CCeeeEEecCCC--EEEEeeecccCC
Confidence 999999986444 666655555544
No 185
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=43.12 E-value=20 Score=32.66 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.6
Q ss_pred ccCCHHHHHhhcCCCHHHHHHhcccc
Q 048197 236 RGFDERLLAEAFNVNPDLISKLQRPQ 261 (480)
Q Consensus 236 ~gf~~~~La~af~v~~~~~~kl~~~~ 261 (480)
...+++-||+.|+++.+.+.+|++.+
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~~ 113 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKSH 113 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcCC
Confidence 47899999999999999999999765
No 186
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=42.46 E-value=19 Score=30.73 Aligned_cols=13 Identities=54% Similarity=0.687 Sum_probs=6.1
Q ss_pred CCcchhHHHHHHH
Q 048197 1 MASTSLLCLGLGF 13 (480)
Q Consensus 1 m~~~~~~~~~l~~ 13 (480)
||..++|+|.|+|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8733344444443
No 187
>PF13994 PgaD: PgaD-like protein
Probab=40.95 E-value=21 Score=32.26 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=22.2
Q ss_pred CCHHHHHhhcCCCHHHHHHhcccc
Q 048197 238 FDERLLAEAFNVNPDLISKLQRPQ 261 (480)
Q Consensus 238 f~~~~La~af~v~~~~~~kl~~~~ 261 (480)
.+.+-+|+.|+++++.++++++.+
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~~k 124 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQAK 124 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHhCC
Confidence 799999999999999999998765
No 188
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=40.66 E-value=51 Score=31.57 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=37.1
Q ss_pred eeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEE
Q 048197 352 NLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVV 403 (480)
Q Consensus 352 ~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vV 403 (480)
.+.+|-+.-.-= -.++.+.||++|.+++...+++|+.+.-.-+.+||++-.
T Consensus 41 ~~~kge~l~~~G-d~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 41 PIQKGQTLFKAG-DELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eecCCCEeECCC-CCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 455555443222 246788999999999999999998765556789999854
No 189
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=40.58 E-value=51 Score=27.60 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=16.6
Q ss_pred eEEeeecCCccEEEECCCcEEEEEc
Q 048197 389 NVFDGQIREGQLIVVPQGFAVVKRA 413 (480)
Q Consensus 389 ~~f~~~l~~GdV~vVPqg~~~~~~a 413 (480)
.+..-.-++||+++||+|..|...+
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n 103 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFN 103 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEE
T ss_pred ccccceECCCCEEEECCCceEEEEe
Confidence 3444578999999999999998755
No 190
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=38.54 E-value=83 Score=28.72 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=42.5
Q ss_pred eeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCC
Q 048197 81 VAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTG 160 (480)
Q Consensus 81 vs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG 160 (480)
.......+++|..+...=-.++.+++|++|...+....+.+.+. -+..+.+||+|-..+=
T Consensus 21 ~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~--------------------~~~~~~~g~~fg~~~l 80 (214)
T COG0664 21 LKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREI--------------------ILGFLGPGDFFGELAL 80 (214)
T ss_pred hhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEE--------------------EEEEecCCchhhhHHH
Confidence 34455667777555444445778999999999999988765432 2567999999977653
No 191
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=38.45 E-value=1.5e+02 Score=29.92 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=41.7
Q ss_pred CeeEEEEEEcCCeeecCcccC-CCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTN-TPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~-a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
-+.+..++|+++.-..-. .. -...+.++.|++.+.+ ++.+.++- +.| . .++. ...|.++||
T Consensus 26 ~~~~~~l~L~~g~~~~~~-~~~~E~~vv~l~G~~~v~~---~g~~~~~l--------~~R-~----~vF~-~~~d~lYvp 87 (261)
T PF04962_consen 26 YMGFGVLRLEAGESLEFE-LERRELGVVNLGGKATVTV---DGEEFYEL--------GGR-E----SVFD-GPPDALYVP 87 (261)
T ss_dssp CBECCCEEEECCHCCCCC-CCSEEEEEEEESSSEEEEE---TTEEEEEE---------TT-S----SGGG-S--EEEEE-
T ss_pred ccceEEEEecCCCEEecc-CCCcEEEEEEeCCEEEEEe---CCceEEEe--------ccc-c----cccC-CCCcEEEeC
Confidence 445556788887654333 43 4455677899999987 22111100 000 0 1344 567999999
Q ss_pred CCCEEEEEcCCCCcEE
Q 048197 159 TGSANWIYNDGPSELV 174 (480)
Q Consensus 159 aG~~h~~~N~G~~~l~ 174 (480)
.|...-+....+.++.
T Consensus 88 ~g~~~~i~a~~~ae~~ 103 (261)
T PF04962_consen 88 RGTKVVIFASTDAEFA 103 (261)
T ss_dssp TT--EEEEESSTEEEE
T ss_pred CCCeEEEEEcCCCEEE
Confidence 9999888886664433
No 192
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=37.53 E-value=1e+02 Score=29.82 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=47.7
Q ss_pred EEEcCCeeecCcccCCC---eEEEEE--eceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCC
Q 048197 86 HRIQQRGLVVPSYTNTP---ELFYVV--QGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTG 160 (480)
Q Consensus 86 ~~i~p~gl~lPh~~~a~---el~yV~--~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG 160 (480)
+.+++||...+|+|... -++||. .+.|-+.+..|.....+..+..... ....... -....-++||++++|+=
T Consensus 101 ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~--~~~~~~~-~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 101 NILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPN--AKRAVQR-FVYVPPQEGRVLLFESW 177 (201)
T ss_pred EEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCc--cccccCc-cEEECCCCCeEEEECCC
Confidence 35688999999998644 455666 3344555555543211110000000 0000000 01235599999999999
Q ss_pred CEEEEEc-CCCCcEEEEE
Q 048197 161 SANWIYN-DGPSELVVVA 177 (480)
Q Consensus 161 ~~h~~~N-~G~~~l~~v~ 177 (480)
.-|...= .++++=+-|+
T Consensus 178 L~H~v~p~~~~~~RISiS 195 (201)
T TIGR02466 178 LRHEVPPNESEEERISVS 195 (201)
T ss_pred CceecCCCCCCCCEEEEE
Confidence 9999854 4554444444
No 193
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=37.51 E-value=34 Score=38.31 Aligned_cols=37 Identities=19% Similarity=0.503 Sum_probs=28.7
Q ss_pred CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEE
Q 048197 367 AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVV 403 (480)
Q Consensus 367 A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vV 403 (480)
+|-=.|.+.+.|.|.|++.+|+.++...|.+||+|-.
T Consensus 418 SHdKTFe~~~~G~v~vvd~~G~vl~eh~Ve~GDIwRm 454 (735)
T PF03971_consen 418 SHDKTFEIPADGTVRVVDESGEVLMEHEVEAGDIWRM 454 (735)
T ss_dssp -GGGEEE-SSSEEEEEEETTS-EEEEEEE-TT-EEEE
T ss_pred CCCcceECCCCcEEEEEeCCCCEEEEeeecCCcchhh
Confidence 4556788999999999999999999999999999854
No 194
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=37.33 E-value=1.6e+02 Score=28.05 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=39.9
Q ss_pred EEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 86 HRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 86 ~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
..+++|-.+...=-..+.++||++|...+-...+++.+.. +.-+.+||++..+
T Consensus 40 ~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--------------------~~~~~~gd~~g~~ 92 (235)
T PRK11161 40 KPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--------------------TGFHLAGDLVGFD 92 (235)
T ss_pred eeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--------------------EEeccCCceeccc
Confidence 4677887776666678999999999999988877654421 3456899999643
No 195
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=36.86 E-value=58 Score=29.77 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=41.7
Q ss_pred CCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCc-----EEEEEcCCCCeEEEEEE
Q 048197 366 NAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGF-----AVVKRASNRGLEWISFK 424 (480)
Q Consensus 366 nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~-----~~~~~ag~e~l~~v~f~ 424 (480)
.++.+.+|++|..++....++|+...-..+.+||+|-...-+ .+...+-.+ .+++.+.
T Consensus 40 ~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~-~~~~~~~ 102 (214)
T COG0664 40 EADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTD-VEVLEIP 102 (214)
T ss_pred cCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcce-EEEEEec
Confidence 355689999999999999999987666689999999766433 233344333 6666553
No 196
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=36.76 E-value=3.6e+02 Score=25.19 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=61.7
Q ss_pred cCCceEEEeCCCChhccccCe------eEEEEEEcCCeeecCccc--CCCeEEEEEec-eEEEEEEcCCCccchhhhhhc
Q 048197 61 SEAGVTEFWDQNDEQLQCANV------AVFRHRIQQRGLVVPSYT--NTPELFYVVQG-RGIHGAVFPGCPETYQESQQR 131 (480)
Q Consensus 61 se~G~~e~~~~~~~~l~~~gv------s~~r~~i~p~gl~lPh~~--~a~el~yV~~G-~g~~g~v~pg~~etf~~~~~~ 131 (480)
-|||.+..-+... +-..+|. .+...-|++.. .-||| .+.|+.+...| .+.+-++..|..++|
T Consensus 19 pEGG~y~eT~rs~-e~~~~G~~~R~~sT~IYyLLe~~~--~s~~HRv~a~eiwHf~ag~pl~~~l~~dG~~~s~------ 89 (162)
T COG3542 19 PEGGFYRETFRSE-EKDAAGGDVRNHSTAIYYLLEEDN--ISAWHRVTADEIWHFYAGAPLELHLSEDGGAESF------ 89 (162)
T ss_pred CCCCceeeeeccc-cccCCCccccceeEEEEEEecCCc--cchheecchhheEEEecCCceEEEEEeCCCeEEE------
Confidence 5888875443211 1112232 34455678877 45777 38888888877 577777776655543
Q ss_pred cccccccccccccee-EeecCCcE--EEeCCCCEEE-EEcCCCCcEEEEEEeeCCCCCccccccceeeeec
Q 048197 132 SSESQSRSQDQHQKV-RQIREGDL--VALPTGSANW-IYNDGPSELVVVALVDVGNSDNQLDQFLRKFYLG 198 (480)
Q Consensus 132 ~~~~~~~~~d~~qk~-~~l~~GDV--~~iPaG~~h~-~~N~G~~~l~~v~~~d~~n~~nqld~~~~~F~La 198 (480)
++ .+++.|.+ ++||+|+-.- ..-.|+ +-.+|+. +..+.- .|..|-||
T Consensus 90 -------------~LG~d~~~Ge~~Q~vVP~g~w~aS~~~~g~-~~tLVgC--tVaPGF----dF~~Fela 140 (162)
T COG3542 90 -------------TLGPDLEKGERPQYVVPAGTWWASAVSLGE-DYTLVGC--TVAPGF----DFEDFELA 140 (162)
T ss_pred -------------EecccccCCceeEEEEeCCcEEEEEEecCC-CceEEEE--EecCCc----cchhcccc
Confidence 22 47888876 6899995221 112232 4444543 223331 25667776
No 197
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=36.41 E-value=1.5e+02 Score=27.47 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=38.1
Q ss_pred eeEEeeeeccccccccccccCCce--EEEEEEee-EEEEEEecCCceEEeeecCCccEEEECCCcEEEEEc-CCCCe
Q 048197 346 LSAEKGNLYQNAMMAPHWNLNAHS--VVYITRGN-GRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRA-SNRGL 418 (480)
Q Consensus 346 lsa~~v~L~pgam~~PHwh~nA~e--i~yV~~G~-grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~a-g~e~l 418 (480)
..+....|.||+...||.-+.... +-+.+... ..+.+... .... ..++|.++++=-.|.|...| +++.-
T Consensus 80 ~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~--~~~~--~w~~G~~~~fD~s~~H~~~N~~~~~R 152 (163)
T PF05118_consen 80 GRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG--GETR--HWREGECWVFDDSFEHEVWNNGDEDR 152 (163)
T ss_dssp EEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET--TEEE--B--CTEEEEE-TTS-EEEEESSSS-E
T ss_pred hhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC--CeEE--EeccCcEEEEeCCEEEEEEeCCCCCE
Confidence 346677899999999999775433 22233331 22222221 1222 68999999999999998755 55443
No 198
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=35.97 E-value=3.7e+02 Score=25.14 Aligned_cols=87 Identities=7% Similarity=-0.089 Sum_probs=52.2
Q ss_pred CeeEEEEEEcCCeeecCcccC-CCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeC
Q 048197 80 NVAVFRHRIQQRGLVVPSYTN-TPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALP 158 (480)
Q Consensus 80 gvs~~r~~i~p~gl~lPh~~~-a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iP 158 (480)
.+.+.-+.-.||--..+|=|. +--++.|++|...-..-...... + .......+...+..|.+++++
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~------------~-~~~~~~~~~~~~~~g~~~~~~ 140 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDG------------G-APLELVGRERLLPGGVTYIFD 140 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSS------------S--EEEECEEEEEETTTEEEEBT
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcc------------c-CcccccCceEecCCCeEEecC
Confidence 577778889999988888775 77899999998766643221110 0 000011123457888888999
Q ss_pred CCCEEEEEcCC-CCcEEEEEEe
Q 048197 159 TGSANWIYNDG-PSELVVVALV 179 (480)
Q Consensus 159 aG~~h~~~N~G-~~~l~~v~~~ 179 (480)
.+..|-+.|.+ +++.+-+=++
T Consensus 141 ~~~iH~v~n~s~~~~avSLHvY 162 (175)
T PF05995_consen 141 PHGIHRVENPSGDEPAVSLHVY 162 (175)
T ss_dssp TTBEEEEEES-SSS-EEEEEEE
T ss_pred CCCeEEeccCCCCCCEEEEEEc
Confidence 99999998875 7777665444
No 199
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=35.97 E-value=72 Score=30.56 Aligned_cols=53 Identities=17% Similarity=0.143 Sum_probs=38.7
Q ss_pred EEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEe
Q 048197 84 FRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVAL 157 (480)
Q Consensus 84 ~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~i 157 (480)
....+++|-.+...-..++.+++|++|...+.....|... -+..+.+||++-.
T Consensus 31 ~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~---------------------~i~~~~~g~~~g~ 83 (236)
T PRK09392 31 FLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRET---------------------TLAILRPVSTFIL 83 (236)
T ss_pred ceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceE---------------------EEEEeCCCchhhh
Confidence 3567888887766556688999999999998875444321 2578899998753
No 200
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=35.80 E-value=27 Score=33.83 Aligned_cols=86 Identities=12% Similarity=0.032 Sum_probs=61.0
Q ss_pred ccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCC---------c------eEEeeecCC-cc-EEEE
Q 048197 341 LRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENG---------E------NVFDGQIRE-GQ-LIVV 403 (480)
Q Consensus 341 L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G---------~------~~f~~~l~~-Gd-V~vV 403 (480)
..+-.+++....|.+|+...+|=||.=+-+.-|+.|+.+|.-++--. . .+.+.++.+ ++ .+.-
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 34445788888999999999999999999999999999999886421 0 112222322 23 4445
Q ss_pred CCC--cEEEEEcCCCCeEEEEEEec
Q 048197 404 PQG--FAVVKRASNRGLEWISFKTN 426 (480)
Q Consensus 404 Pqg--~~~~~~ag~e~l~~v~f~ts 426 (480)
|.. -.|.+.|.++++.++-+..-
T Consensus 119 P~~ggNiH~f~a~~~p~AflDIL~P 143 (200)
T PF07847_consen 119 PTSGGNIHEFTALTGPCAFLDILAP 143 (200)
T ss_pred cCCCCeeEEEEeCCCCeEEEEEccC
Confidence 665 67888887778888877653
No 201
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=35.64 E-value=21 Score=36.51 Aligned_cols=14 Identities=43% Similarity=0.401 Sum_probs=10.5
Q ss_pred CCcc----hhHHHHHHHH
Q 048197 1 MAST----SLLCLGLGFL 14 (480)
Q Consensus 1 m~~~----~~~~~~l~~~ 14 (480)
||+| .||+|.||.|
T Consensus 1 MaMmMTGRVLLVCALCVL 18 (291)
T PTZ00459 1 MAMMMTGRVLLVCALCVL 18 (291)
T ss_pred CccchhchHHHHHHHHHH
Confidence 8866 6788878776
No 202
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=35.20 E-value=67 Score=29.47 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=29.9
Q ss_pred CCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEe
Q 048197 100 NTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVAL 157 (480)
Q Consensus 100 ~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~i 157 (480)
..+.+++|++|...+..+.+++.+.. +..+.+||+|-.
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~G~e~~--------------------l~~~~~g~~~G~ 47 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYESGEEIT--------------------VALLRENSVFGV 47 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCCCcEee--------------------eEEccCCCEeee
Confidence 36789999999999998888665421 578999998753
No 203
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=34.96 E-value=3.8e+02 Score=26.89 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=59.2
Q ss_pred CCCeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecC----Cc--eEEeeecCCc
Q 048197 325 PRGGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAEN----GE--NVFDGQIREG 398 (480)
Q Consensus 325 ~~~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~----G~--~~f~~~l~~G 398 (480)
...|++..+++.+ +.+.. ++.....|.+|.-.+--- .+-..++.++.|++.|..-... |. .+| +=++=
T Consensus 11 ~~~g~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~-~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvF--e~~p~ 84 (270)
T COG3718 11 AGVGLVQDVTPES-AGWEY--VGFRLLRLAAGESATEET-GDRERCLVLVTGKATVSAHGSTFGEIGTRMSVF--ERKPP 84 (270)
T ss_pred CCCcceEEecCCC-CCcee--EEEEEEEccCCCcccccC-CCceEEEEEEeeeEEEeeccchHhhcccccccc--cCCCC
Confidence 3578888888766 45565 566678899999887665 3444566677999888765542 33 356 34577
Q ss_pred cEEEECCCcEEEEEcC
Q 048197 399 QLIVVPQGFAVVKRAS 414 (480)
Q Consensus 399 dV~vVPqg~~~~~~ag 414 (480)
|.++||.|-.+.+.|.
T Consensus 85 ~~vYvp~g~~~~vtA~ 100 (270)
T COG3718 85 DSVYVPAGSAFSVTAT 100 (270)
T ss_pred CeEEecCCceEEEEee
Confidence 9999999998877664
No 204
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=34.79 E-value=2.5e+02 Score=24.77 Aligned_cols=51 Identities=18% Similarity=0.312 Sum_probs=33.2
Q ss_pred CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEEE
Q 048197 367 AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFK 424 (480)
Q Consensus 367 A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f~ 424 (480)
.--+.+.++|.++++.- |..+ .+.+||+++++.+-++.... ..+++.+.+.
T Consensus 55 ~~~l~~~~~G~~~~~~~---g~~~---~~~pg~~~l~d~~~~~~~~~-~~~~~~~~l~ 105 (172)
T PF14525_consen 55 HYLLVLPLSGSARIEQG---GREV---ELAPGDVVLLDPGQPYRLEF-SAGCRQLSLR 105 (172)
T ss_pred EEEEEEEccCCEEEEEC---CEEE---EEcCCeEEEEcCCCCEEEEE-CCCccEEEEE
Confidence 33566667777765532 3333 69999999999999877543 3345555444
No 205
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=34.07 E-value=3.8e+02 Score=26.54 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=41.8
Q ss_pred EeeeeccccccccccccCCceEEEEEE-eeEEEEEEecC--Cc---------------eEEe----eecCCccEEEECCC
Q 048197 349 EKGNLYQNAMMAPHWNLNAHSVVYITR-GNGRMQIVAEN--GE---------------NVFD----GQIREGQLIVVPQG 406 (480)
Q Consensus 349 ~~v~L~pgam~~PHwh~nA~ei~yV~~-G~grv~vv~~~--G~---------------~~f~----~~l~~GdV~vVPqg 406 (480)
-.+.+.+|=+...|+|.+-.|=+..-- |+..|++...+ |. +.+. =+|.+|+-+.+|+|
T Consensus 90 Kim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg 169 (225)
T PF07385_consen 90 KIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPG 169 (225)
T ss_dssp EEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TT
T ss_pred hheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCC
Confidence 446778999999999998766555543 46777888753 21 0110 16899999999999
Q ss_pred cEEEEEcCCCCeEEE
Q 048197 407 FAVVKRASNRGLEWI 421 (480)
Q Consensus 407 ~~~~~~ag~e~l~~v 421 (480)
.-|...+.... .++
T Consensus 170 ~yH~Fw~e~g~-vLi 183 (225)
T PF07385_consen 170 IYHWFWGEGGD-VLI 183 (225)
T ss_dssp EEEEEEE-TTS-EEE
T ss_pred CeeeEEecCCC-EEE
Confidence 99988775444 444
No 206
>PLN02868 acyl-CoA thioesterase family protein
Probab=30.91 E-value=1.4e+02 Score=31.69 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=38.0
Q ss_pred EEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEe
Q 048197 85 RHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVAL 157 (480)
Q Consensus 85 r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~i 157 (480)
..++.+|.++...=.....+++|++|+..+-...++. +. -+..+++||+|-.
T Consensus 33 ~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~--------------------~l~~l~~Gd~fG~ 84 (413)
T PLN02868 33 PKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SR--------------------PEFLLKRYDYFGY 84 (413)
T ss_pred EEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cE--------------------EEEEeCCCCEeeh
Confidence 4567777766555556889999999999987765543 21 1578899999984
No 207
>COG1741 Pirin-related protein [General function prediction only]
Probab=30.54 E-value=1.5e+02 Score=30.23 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=49.5
Q ss_pred EEEEcCCeeecCcccC-CCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCC--C
Q 048197 85 RHRIQQRGLVVPSYTN-TPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTG--S 161 (480)
Q Consensus 85 r~~i~p~gl~lPh~~~-a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG--~ 161 (480)
-..+.||.-+.||=|. -.-+.||++|+..-.-.. | -...+++|||-.+-|| +
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~-G------------------------n~~~i~pGdvqwMTAG~GI 102 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRDSL-G------------------------NKGVIRPGDVQWMTAGSGI 102 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEeecC-C------------------------ceeeecccceeEEcCCCce
Confidence 3468888877888674 677789999996654321 1 1358999999999987 6
Q ss_pred EEEEEcC--CCCcEEEEEE
Q 048197 162 ANWIYND--GPSELVVVAL 178 (480)
Q Consensus 162 ~h~~~N~--G~~~l~~v~~ 178 (480)
.|.=+|. .+.+|..+-+
T Consensus 103 ~HSE~~~~~~~~~l~~~Ql 121 (276)
T COG1741 103 VHSEMNPPSTGKPLHGLQL 121 (276)
T ss_pred eecccCCccCCCccceeee
Confidence 7777885 3456766654
No 208
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=29.72 E-value=54 Score=23.57 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=19.3
Q ss_pred ccCCHHHHHhhcCCCHHHHHHhccc
Q 048197 236 RGFDERLLAEAFNVNPDLISKLQRP 260 (480)
Q Consensus 236 ~gf~~~~La~af~v~~~~~~kl~~~ 260 (480)
.|++..-+|+.|||+..++-++...
T Consensus 20 ~G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 20 EGMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp TT--HHHHHHHTTS-HHHHHHHHCC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 4799999999999999999988754
No 209
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=29.33 E-value=43 Score=37.56 Aligned_cols=37 Identities=16% Similarity=0.457 Sum_probs=31.9
Q ss_pred CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEE
Q 048197 367 AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVV 403 (480)
Q Consensus 367 A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vV 403 (480)
+|-=.|.+.+.|.|.||+.+|+.++...|++||+|-.
T Consensus 422 SHdkTFei~~~G~v~Vvd~~G~vl~eh~Ve~GDIwRm 458 (741)
T TIGR00178 422 SHDKTFQIPADGVVRVVDSSGEVLLEQSVEAGDIWRM 458 (741)
T ss_pred CCCcceecCCCceEEEEeCCCCEEEEeeccCCcchhh
Confidence 3555678889999999999999999999999999853
No 210
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=28.67 E-value=52 Score=23.25 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=28.1
Q ss_pred cCCHHHHHhhcCCCHHHHHHhccccccceeEEEeccc
Q 048197 237 GFDERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEEE 273 (480)
Q Consensus 237 gf~~~~La~af~v~~~~~~kl~~~~~~rg~Iv~v~~~ 273 (480)
+++..-|++.|+++..++.+....=...|.|.+..++
T Consensus 14 ~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~~~~~ 50 (53)
T smart00420 14 KVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGG 50 (53)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 5789999999999999987766444345788776544
No 211
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=28.40 E-value=63 Score=23.64 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=26.0
Q ss_pred ccccccccccCCc--eEEEEEEeeEEEEEEecC
Q 048197 356 NAMMAPHWNLNAH--SVVYITRGNGRMQIVAEN 386 (480)
Q Consensus 356 gam~~PHwh~nA~--ei~yV~~G~grv~vv~~~ 386 (480)
||++.-++.|... .++.+++..++|.|+|-.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 5777777877666 999999999999999964
No 212
>PRK04043 tolB translocation protein TolB; Provisional
Probab=28.34 E-value=2.8e+02 Score=29.71 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=34.2
Q ss_pred eecccccc-ccccccCCceEEEEEE--eeEEEEEEecCCceEEeeecCCccE
Q 048197 352 NLYQNAMM-APHWNLNAHSVVYITR--GNGRMQIVAENGENVFDGQIREGQL 400 (480)
Q Consensus 352 ~L~pgam~-~PHwh~nA~ei~yV~~--G~grv~vv~~~G~~~f~~~l~~GdV 400 (480)
.|..++.. .|.|.|+...|+|... |+..+.+++-+|+..+.-....|++
T Consensus 363 ~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~ 414 (419)
T PRK04043 363 RLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKI 414 (419)
T ss_pred ECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCcc
Confidence 34444433 5999999998888874 6778889999987544333456664
No 213
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=28.06 E-value=3.5e+02 Score=22.41 Aligned_cols=62 Identities=11% Similarity=0.000 Sum_probs=43.4
Q ss_pred CCeeecCcccCCCeE--EEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEc
Q 048197 90 QRGLVVPSYTNTPEL--FYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYN 167 (480)
Q Consensus 90 p~gl~lPh~~~a~el--~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N 167 (480)
|.+|+-.|.+.+..| +-|++|+..+-...+...+. .+..-+.+|+..+|++...|-+.=
T Consensus 12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~-------------------~~~~~~~~~~~~~i~Pq~wH~V~p 72 (82)
T PF09313_consen 12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEP-------------------EEEVFIPAGQPPVIEPQQWHRVEP 72 (82)
T ss_dssp -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SE-------------------SEEEEEETTEEEEE-TT-EEEEEE
T ss_pred cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCce-------------------eEEEEeCCCCCceeCCCceEEEEE
Confidence 456667777777766 58999999998876643221 124688999999999999999976
Q ss_pred CCC
Q 048197 168 DGP 170 (480)
Q Consensus 168 ~G~ 170 (480)
.++
T Consensus 73 ~s~ 75 (82)
T PF09313_consen 73 LSD 75 (82)
T ss_dssp SST
T ss_pred CCC
Confidence 544
No 214
>PLN02868 acyl-CoA thioesterase family protein
Probab=27.52 E-value=1e+02 Score=32.85 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=31.0
Q ss_pred CCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEEC
Q 048197 366 NAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVP 404 (480)
Q Consensus 366 nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVP 404 (480)
.++.+.+|++|++++...+.+|..+ -..+.+||+|-..
T Consensus 48 ~~~~lyiI~~G~V~v~~~~~~ge~~-l~~l~~Gd~fG~~ 85 (413)
T PLN02868 48 PGDGLYFIWKGEAEVSGPAEEESRP-EFLLKRYDYFGYG 85 (413)
T ss_pred cCceEEEEEeCEEEEEEECCCCcEE-EEEeCCCCEeehh
Confidence 4678999999999999999888544 3578999998753
No 215
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=26.60 E-value=41 Score=30.11 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=29.6
Q ss_pred CceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECC
Q 048197 367 AHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQ 405 (480)
Q Consensus 367 A~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPq 405 (480)
|--..||+.|+.--++++-||...- -+++||+++|=.
T Consensus 52 aRf~TYvI~g~rGSg~I~lNGAAAr--l~~~GD~VII~s 88 (126)
T COG0853 52 ARFSTYVIAGERGSGVICLNGAAAR--LVQVGDLVIIMS 88 (126)
T ss_pred cEEEEEEEEccCCCcEEEechHHHh--hCCCCCEEEEEE
Confidence 4567899999998999999997432 479999998754
No 216
>PHA02951 Hypothetical protein; Provisional
Probab=25.98 E-value=75 Score=32.77 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=38.3
Q ss_pred eEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEc-CC-CCcEEEEEEe
Q 048197 103 ELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYN-DG-PSELVVVALV 179 (480)
Q Consensus 103 el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N-~G-~~~l~~v~~~ 179 (480)
-.+.+++-+|+.|+..|+|+-. ..++.+||+++.|+--...+.= .| +..-.+|.+.
T Consensus 126 vAtICIKNeGiSgl~Vp~t~~L---------------------K~ni~~GD~IVsRs~rGv~fLPQIGGeaiYLIVsL~ 183 (337)
T PHA02951 126 TATICLKNEGISGLYIPGTSVL---------------------KINICQGDTIVSRSSRGVQFLPQIGGEAIYLVVSLC 183 (337)
T ss_pred EEEEEEcCCCeeEEEeCCCchh---------------------eeeeccCcEEEEeccccceeccccCceeEEEEEEEe
Confidence 4457899999999999999621 2588999999999864443322 34 4444444443
No 217
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=25.83 E-value=1.3e+02 Score=28.62 Aligned_cols=15 Identities=40% Similarity=0.467 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHhhhhh
Q 048197 6 LLCLGLGFLILFHACF 21 (480)
Q Consensus 6 ~~~~~l~~~~~~~~~~ 21 (480)
++++++|+| |+.||.
T Consensus 5 ~~~~~~~~l-lL~gCa 19 (202)
T PRK00022 5 LRLLLLAAL-LLAGCA 19 (202)
T ss_pred HHHHHHHHH-HHHhCC
Confidence 334444444 446785
No 218
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=25.39 E-value=3.6e+02 Score=21.66 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=41.1
Q ss_pred EEEEcCCeee-cCc-ccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCE
Q 048197 85 RHRIQQRGLV-VPS-YTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSA 162 (480)
Q Consensus 85 r~~i~p~gl~-lPh-~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~ 162 (480)
++.|.|++.+ ... .......+++.+|+..+-+-.... . -..|+-++..+...|..
T Consensus 20 ~v~l~~~s~~~~~~~~~~~~~~~~L~~G~~~~~~~~~~~-~----------------------~~~V~T~~~~i~v~GT~ 76 (98)
T PF04773_consen 20 RVRLGPNSRVSVDRDSGSEPTRLRLLSGEILFDVSPGKK-R----------------------PFEVRTPTATIGVRGTR 76 (98)
T ss_pred EEEECCCcEEEEEcccCCCceEEEEcCCCEEEEEcccCC-C----------------------CEEEEeCCEEEEEecCE
Confidence 5889999977 222 234566799999999887643221 1 16888899999999977
Q ss_pred EEE
Q 048197 163 NWI 165 (480)
Q Consensus 163 h~~ 165 (480)
+++
T Consensus 77 f~v 79 (98)
T PF04773_consen 77 FSV 79 (98)
T ss_pred EEE
Confidence 755
No 219
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=25.06 E-value=53 Score=27.14 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=17.7
Q ss_pred CCcc-hhHHHHHHHHHHhhhhhhhh
Q 048197 1 MAST-SLLCLGLGFLILFHACFAQI 24 (480)
Q Consensus 1 m~~~-~~~~~~l~~~~~~~~~~a~~ 24 (480)
||-+ .-|...|.||+|...|.|-.
T Consensus 1 MAvSvLrltivlGLlvLIltC~Ad~ 25 (88)
T PF15144_consen 1 MAVSVLRLTIVLGLLVLILTCHADD 25 (88)
T ss_pred CchHHHHHHHHHHHHHHHhhhccCC
Confidence 7765 34455688999999999953
No 220
>PF11256 DUF3055: Protein of unknown function (DUF3055); InterPro: IPR021415 This family of proteins with unknown function appear to be restricted to Firmicutes.
Probab=24.94 E-value=2.6e+02 Score=23.30 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred cccccccC---CCHHHHHHHcCCCHHHHHHHHh
Q 048197 436 GRASVIRG---LPLDVIQNSFQVSRDEAQRLKY 465 (480)
Q Consensus 436 G~~svl~~---lp~eVla~af~vs~e~~~~l~~ 465 (480)
|+..+|.. -.+.-|+.+|++++++++.|..
T Consensus 44 gr~ailg~dDlee~gyl~~~f~l~~eea~eL~~ 76 (81)
T PF11256_consen 44 GRFAILGPDDLEEPGYLEHAFGLSEEEAEELRE 76 (81)
T ss_pred CceEEEChhhcccccHHHHHhCCCHHHHHHHHH
Confidence 55555542 3677899999999999999864
No 221
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=24.87 E-value=2.1e+02 Score=23.99 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=34.8
Q ss_pred eccccccccccccCCceEEEEE-EeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEE
Q 048197 353 LYQNAMMAPHWNLNAHSVVYIT-RGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISF 423 (480)
Q Consensus 353 L~pgam~~PHwh~nA~ei~yV~-~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f 423 (480)
-+.+|+..|-=.........|+ =|.|+.. .+|.. ....++.||.+++|.+...-.... +-+|+.+
T Consensus 19 ~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~---~~g~~-~~~~vk~GD~Vl~~~~~g~~v~~~--~~~~~~~ 84 (93)
T PF00166_consen 19 KTASGIILPESAKEKPNQGKVVAVGPGRYN---ENGEE-VPMDVKVGDKVLFPKYAGTEVKFD--GEKYLIV 84 (93)
T ss_dssp TCTTSCCE-CCSSSSEEEEEEEEE-SEEET---TTSSE-EETSS-TTSEEEEETTTSEEEEET--TEEEEEE
T ss_pred eecceEEeccccccccceeEEEEcCCcccc---CCCcE-eeeeeeeccEEeccccCceEEEEC--CEEEEEE
Confidence 3567888882222122233333 4555544 56664 345799999999999986544332 3444443
No 222
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=24.79 E-value=36 Score=39.86 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=50.0
Q ss_pred CcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEE
Q 048197 339 PILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLI 401 (480)
Q Consensus 339 P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~ 401 (480)
|.|..++.++.++.|+||-+.---= =.++++.||+.|+.|--+--+.|+.-+-+++..||++
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqg-D~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~i 560 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQG-DSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLI 560 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcC-CccCcEEEEecCeehhhhhccCccchhhhhccCccee
Confidence 6788889999999999998875544 3588999999999987666666665455788999988
No 223
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=24.45 E-value=3.3e+02 Score=28.66 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=57.1
Q ss_pred CeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEE
Q 048197 327 GGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIV 402 (480)
Q Consensus 327 ~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~v 402 (480)
|..+..+|.+- -.+ -..+.|++++..-|+.-+-..+...+..+++.-=.|-++.|+|+.+--.+|++||-+.
T Consensus 252 G~eVlvVd~~G--~tR--~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL 323 (344)
T PRK02290 252 GDEVLVVDADG--NTR--EAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVL 323 (344)
T ss_pred CCEEEEEeCCC--CEE--EEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEE
Confidence 45566666543 122 3788999999999999888778889999999999999999999855445899999874
No 224
>PF06586 TraK: TraK protein; InterPro: IPR010563 This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown [].
Probab=24.44 E-value=2e+02 Score=27.93 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=36.9
Q ss_pred ccCCCCCCcceecCCceEEEeCCCChhccccCeeEEEEEEcCCeeec-CcccCCCeEEEEEeceE-EEEE
Q 048197 49 DLNALEPQQRVESEAGVTEFWDQNDEQLQCANVAVFRHRIQQRGLVV-PSYTNTPELFYVVQGRG-IHGA 116 (480)
Q Consensus 49 ~L~a~eP~~~~~se~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~l-Ph~~~a~el~yV~~G~g-~~g~ 116 (480)
.|+..+|. ||..+++.|..+......+-..++....... -|.+.+ +.+...|.-+||..+.| .+.+
T Consensus 37 ~lS~~~~N-RIv~~~~~i~~V~~~~~~~~~~~~~~~~~~~-~G~v~~~~~~~~~p~tl~vtt~~g~~~sl 104 (234)
T PF06586_consen 37 PLSNRDPN-RIVVPGDRITSVSFPEGGCITVDIQGENDDV-TGSVYVSPTYSSKPFTLFVTTEKGRTYSL 104 (234)
T ss_pred EEcCCCCe-EEEccCCceeEEecCCCcccccccccccccc-cCcEEEEecCCCCCEEEEEEeCCCCEEEE
Confidence 67777774 6778888777665443322111222211111 133332 47778888889988877 4443
No 225
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=24.38 E-value=64 Score=23.43 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=25.2
Q ss_pred CHHHHHhhcCCCHHHHHHhccccccceeEEEecc
Q 048197 239 DERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEE 272 (480)
Q Consensus 239 ~~~~La~af~v~~~~~~kl~~~~~~rg~Iv~v~~ 272 (480)
+..-||+.|+++..++++....=.+.|.|.+..+
T Consensus 22 s~~~la~~~~vs~~tv~~~l~~L~~~g~i~~~~~ 55 (60)
T smart00345 22 SERELAAQLGVSRTTVREALSRLEAEGLVQRRPG 55 (60)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 6888999999999999886544334577766543
No 226
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=24.32 E-value=3.8e+02 Score=21.53 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=40.2
Q ss_pred Eeeeecccccc-ccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEE
Q 048197 349 EKGNLYQNAMM-APHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVV 410 (480)
Q Consensus 349 ~~v~L~pgam~-~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~ 410 (480)
..+.|.+++.+ .....-.....+++.+|+.++.+-...... | .|+-+...+..+|--+.
T Consensus 19 s~v~l~~~s~~~~~~~~~~~~~~~~L~~G~~~~~~~~~~~~~-~--~V~T~~~~i~v~GT~f~ 78 (98)
T PF04773_consen 19 SRVRLGPNSRVSVDRDSGSEPTRLRLLSGEILFDVSPGKKRP-F--EVRTPTATIGVRGTRFS 78 (98)
T ss_pred CEEEECCCcEEEEEcccCCCceEEEEcCCCEEEEEcccCCCC-E--EEEeCCEEEEEecCEEE
Confidence 34677777777 233323344568889999988888765444 4 58888888888885553
No 227
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=24.05 E-value=1.7e+02 Score=28.97 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=27.4
Q ss_pred cCCceEEeeecCCccEEEECCCcEEEEEcCCCCeEEEEEE
Q 048197 385 ENGENVFDGQIREGQLIVVPQGFAVVKRASNRGLEWISFK 424 (480)
Q Consensus 385 ~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~l~~v~f~ 424 (480)
..|...+ ++.+|+++++|....|-...-..+..|++++
T Consensus 137 ~~g~~~V--kp~aG~~vlfps~~lH~v~pVt~G~R~~~~~ 174 (226)
T PRK05467 137 TYGEHRV--KLPAGDLVLYPSTSLHRVTPVTRGVRVASFF 174 (226)
T ss_pred CCCcEEE--ecCCCeEEEECCCCceeeeeccCccEEEEEe
Confidence 3344444 6899999999999998865545567777664
No 228
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=23.72 E-value=1.6e+02 Score=28.55 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=26.1
Q ss_pred EeecCCcEEEeCCCCEEEEEcCCCCcEEEEEEeeCCC
Q 048197 147 RQIREGDLVALPTGSANWIYNDGPSELVVVALVDVGN 183 (480)
Q Consensus 147 ~~l~~GDV~~iPaG~~h~~~N~G~~~l~~v~~~d~~n 183 (480)
-+|++|.-+-+|+|+-||+..-+. .++|.=..+.|
T Consensus 155 lkL~PGesitL~Pg~~HsFwae~g--~vlvgEvSsvn 189 (225)
T COG3822 155 LKLSPGESITLPPGLYHSFWAEEG--GVLVGEVSSVN 189 (225)
T ss_pred EEECCCCcEecCCCceeeeeecCC--cEEEEEEeecc
Confidence 589999999999999999997433 25555444444
No 229
>PHA02699 hypothetical protein; Provisional
Probab=22.43 E-value=1e+02 Score=32.63 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=39.4
Q ss_pred eEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCEEEEEc-C-CCCcEEEEEEe
Q 048197 103 ELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSANWIYN-D-GPSELVVVALV 179 (480)
Q Consensus 103 el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~h~~~N-~-G~~~l~~v~~~ 179 (480)
-.+.+++-+|+.|+..|+|+- +..++++||.+++|+--...+.= . |+....+|.+.
T Consensus 169 vAtICIKNeGiSgI~Vp~T~~---------------------lktnmqeGD~IVsRSsRGI~FLPQIGGeAiYLIVsL~ 226 (466)
T PHA02699 169 VAIICIKNEGMAAIAVNNTKF---------------------LKTNIQEGDAIVFPAARGMFFLPHIGGDAEYIILTLT 226 (466)
T ss_pred EEEEEEcCCCeeEEEecCCcc---------------------eeeeeecCCEEEEehhchhhhhhhcCCceEEEEEEEe
Confidence 445789999999999999852 35799999999999864433322 3 45545555554
No 230
>PHA02951 Hypothetical protein; Provisional
Probab=22.21 E-value=2.5e+02 Score=29.06 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=40.1
Q ss_pred ccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEE
Q 048197 356 NAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVK 411 (480)
Q Consensus 356 gam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~ 411 (480)
|++..||- .+--...+++-+|+.++.-|+.. .+...+++||++|+|...++.+
T Consensus 115 ~~~~~~~s--~gFvAtICIKNeGiSgl~Vp~t~-~LK~ni~~GD~IVsRs~rGv~f 167 (337)
T PHA02951 115 GALYLGHS--AGFTATICLKNEGISGLYIPGTS-VLKINICQGDTIVSRSSRGVQF 167 (337)
T ss_pred cccccCCc--cceEEEEEEcCCCeeEEEeCCCc-hheeeeccCcEEEEecccccee
Confidence 44444444 45677788999999999988643 4567899999999999988765
No 231
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=22.16 E-value=69 Score=24.96 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=33.1
Q ss_pred ccccCCHHHHHhhcCCCHHHHHHhccccccceeEEEeccceeccCC
Q 048197 234 LFRGFDERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEEELRVLSP 279 (480)
Q Consensus 234 i~~gf~~~~La~af~v~~~~~~kl~~~~~~rg~Iv~v~~~l~~~~P 279 (480)
+--.++.+.||...|++.+++.++.+.=.+.|.|-.-.+.+.+..|
T Consensus 25 ~~~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~~i~I~d~ 70 (76)
T PF13545_consen 25 IPLPLTQEEIADMLGVSRETVSRILKRLKDEGIIEVKRGKIIILDP 70 (76)
T ss_dssp EEEESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESSH
T ss_pred EEecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCCEEEECCH
Confidence 3346999999999999999998887655555666544445555443
No 232
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=21.71 E-value=1.1e+02 Score=32.42 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=32.0
Q ss_pred eEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCCCE
Q 048197 103 ELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTGSA 162 (480)
Q Consensus 103 el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG~~ 162 (480)
-.+.+++-+|+.|+..|+|.- +-+.+++||.++.|+--.
T Consensus 118 ~a~ICikN~GiSgi~V~~t~~---------------------lk~nm~~Gd~ivsrs~rg 156 (366)
T PF04943_consen 118 VATICIKNEGISGIYVPNTNF---------------------LKHNMEEGDYIVSRSSRG 156 (366)
T ss_pred EEEEEEcCCCeeEEEeCCCcc---------------------eEeeeeeCCEEEEecccc
Confidence 345789999999999999862 347999999999998543
No 233
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=21.65 E-value=3.2e+02 Score=23.14 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=32.6
Q ss_pred ccccccccccccCCceEEEEE-EeeEEEEEEecCCceEEeeecCCccEEEECCCcEEEEEcCCCC
Q 048197 354 YQNAMMAPHWNLNAHSVVYIT-RGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRASNRG 417 (480)
Q Consensus 354 ~pgam~~PHwh~nA~ei~yV~-~G~grv~vv~~~G~~~f~~~l~~GdV~vVPqg~~~~~~ag~e~ 417 (480)
+.+|++.|--.-.......|+ =|.|+. +.+|+. ..-.++.||.+++|.+...-+..+++.
T Consensus 21 T~gGI~Lp~~a~~k~~~G~VvaVG~G~~---~~~G~~-~~~~vk~GD~Vlf~~~~g~ev~~~~~~ 81 (95)
T PRK00364 21 TAGGIVLPDSAKEKPQEGEVVAVGPGRR---LDNGER-VPLDVKVGDKVLFGKYAGTEVKIDGEE 81 (95)
T ss_pred ccceEEcCccccCCcceEEEEEECCCeE---CCCCCE-eecccCCCCEEEEcCCCCeEEEECCEE
Confidence 346666665432223333333 455433 234543 234799999999998776544444333
No 234
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=20.98 E-value=47 Score=26.08 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=28.7
Q ss_pred cCCHHHHHhhcCCCHHHHHHhccccccceeEEEecc
Q 048197 237 GFDERLLAEAFNVNPDLISKLQRPQMQKGIIVRVEE 272 (480)
Q Consensus 237 gf~~~~La~af~v~~~~~~kl~~~~~~rg~Iv~v~~ 272 (480)
..+..-||.-|+++.++++.+...--.+|+|.++..
T Consensus 14 ~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~ 49 (69)
T PF09012_consen 14 RVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVDM 49 (69)
T ss_dssp SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecC
Confidence 357889999999999999999877777899988763
No 235
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=20.73 E-value=3.6e+02 Score=25.57 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=44.7
Q ss_pred eeEEEEEEcCCeeecCcccCCCeEEEEEeceEEEEEEcCCCccchhhhhhcccccccccccccceeEeecCCcEEEeCCC
Q 048197 81 VAVFRHRIQQRGLVVPSYTNTPELFYVVQGRGIHGAVFPGCPETYQESQQRSSESQSRSQDQHQKVRQIREGDLVALPTG 160 (480)
Q Consensus 81 vs~~r~~i~p~gl~lPh~~~a~el~yV~~G~g~~g~v~pg~~etf~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~~iPaG 160 (480)
+++..+++.||-+..||-|.---++=|++|-=.- ++.|-..+.--++. + +| +...+|.|- +-+|
T Consensus 73 ltV~~~t~~PG~~~p~HnH~~wglVgil~G~E~n-~~y~~~~~~~~~P~------~---qd-----k~~apgeV~-lSpg 136 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHLMWGLVGILWGGETN-FIYPLAGEEVDEPE------R---QD-----KFAAPGEVH-LSPG 136 (191)
T ss_pred EEEEEEEeCCCcccCCcccchheeeeeeeccccc-ceecccCCCCCCcc------h---hh-----hhcCcceEe-eCCC
Confidence 7888999999999999988777777777774322 22221111000000 0 01 345666666 4447
Q ss_pred CEEEEEcCCCC
Q 048197 161 SANWIYNDGPS 171 (480)
Q Consensus 161 ~~h~~~N~G~~ 171 (480)
..|.+-|+|..
T Consensus 137 dihsv~n~~sd 147 (191)
T COG5553 137 DIHSVANTGSD 147 (191)
T ss_pred CeeeecccCCC
Confidence 77778887654
No 236
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=20.28 E-value=4.4e+02 Score=27.87 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=56.8
Q ss_pred CeEEEEEecCCCCcccccceeEEeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceEEeeecCCccEEE
Q 048197 327 GGRVTTVNRFNLPILRYIQLSAEKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENVFDGQIREGQLIV 402 (480)
Q Consensus 327 ~G~i~~~~~~~~P~L~~l~lsa~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~f~~~l~~GdV~v 402 (480)
|.++..++..- ++--..+.|++++..-|+.-.-..+...+..+++..=.|-++.|+|..+--.+|++||-+.
T Consensus 262 G~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL 333 (354)
T PF01959_consen 262 GDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVL 333 (354)
T ss_pred CCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEE
Confidence 44556665442 1123788999999999998888888889999999999999999999865556899999875
No 237
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=20.02 E-value=1.2e+02 Score=33.48 Aligned_cols=87 Identities=17% Similarity=0.314 Sum_probs=55.0
Q ss_pred CCCCCCCCCcccCCCeEEEEEecCCCCcccccceeE--EeeeeccccccccccccCCceEEEEEEeeEEEEEEecCCceE
Q 048197 313 NINDPSGADAYNPRGGRVTTVNRFNLPILRYIQLSA--EKGNLYQNAMMAPHWNLNAHSVVYITRGNGRMQIVAENGENV 390 (480)
Q Consensus 313 ni~~p~~~~~~~~~~G~i~~~~~~~~P~L~~l~lsa--~~v~L~pgam~~PHwh~nA~ei~yV~~G~grv~vv~~~G~~~ 390 (480)
|+--|+...+-. .++.|+..-..+||.-..+.|.+ ..-.--+=.++-|.| |.....-+.|+.......++|-..
T Consensus 400 ~ly~~s~~~~~~-~~~~v~i~q~T~yP~~~~v~i~v~~~~~~~f~l~lRIP~W---a~~~~i~vNG~~~~~~~~~~gy~~ 475 (520)
T PF07944_consen 400 NLYIPSELTWPV-GGGTVTITQETDYPFEGTVRITVSPDKPVPFTLRLRIPSW---AKGATIRVNGEPVVDTAVPGGYLT 475 (520)
T ss_pred EEEcceEEEEEE-CCcEEEEEEecCCCCCCCEEEEEEcCCCccEEEEEEccCC---CCCcEEEECCEeCCCCcCCCCeEE
Confidence 344455544333 33667777778899877655555 222222335789999 656666678887666666666666
Q ss_pred EeeecCCccEEEE
Q 048197 391 FDGQIREGQLIVV 403 (480)
Q Consensus 391 f~~~l~~GdV~vV 403 (480)
++.+-+.||++-+
T Consensus 476 i~r~W~~gD~v~l 488 (520)
T PF07944_consen 476 IEREWKDGDVVEL 488 (520)
T ss_pred EEeeccCCcEEEE
Confidence 6667788888754
Done!