BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048199
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 55.5 bits (132), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 55 CPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPN 104
CPIC+ ++EA T CGH FC CII +R+ CP L NQL+P+
Sbjct: 9 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 59
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPN 104
L+ CPIC+ ++EA T CGH FC CII +R+ CP L NQL+P+
Sbjct: 22 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 78
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPN 104
L+ CPIC+ ++EA T CGH FC CII +R+ CP L NQL+P+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 55 CPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPN 104
CPIC+ ++EA T CGH FC CII +R+ CP L NQL+P+
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 44 VGVSELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQ- 100
V L +++CPIC+ ++K T C H FC CIIT LR+ + +CP C L + +
Sbjct: 46 VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 105
Query: 101 LYPNFLLDKLLKK 113
L P+ D L+ K
Sbjct: 106 LRPDPNFDALISK 118
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLY 102
++ + K + CPIC+++IKE T C H FC C++ L K S CP C + +T L
Sbjct: 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
Query: 103 PNF----LLDKLLKKTSARQI 119
+ L+++LLK A Q+
Sbjct: 75 ESTRFSQLVEELLKIICAFQL 95
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCI-------ITHLRNKSDCPCCG-----HYL 96
+ +++ CPIC++++ E CGHS C CI +T + KS CP CG +L
Sbjct: 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68
Query: 97 TNNQLYPNFL 106
NQ N +
Sbjct: 69 QANQHLANIV 78
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 44 VGVSELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQ- 100
V L +++CPIC+ ++K T C H FC CIIT LR+ + +CP C L + +
Sbjct: 45 VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 104
Query: 101 LYPNFLLDKLLKK 113
L P+ D L+ K
Sbjct: 105 LRPDPNFDALISK 117
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL---RN---KSDCPCCGHYLTNNQLY 102
+ +++ CPIC++++KE C HSFC CI + RN K +CP C L
Sbjct: 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75
Query: 103 PNF 105
PN
Sbjct: 76 PNL 78
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 44 VGVSELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQ- 100
V L +++CPIC+ ++K T C H FC CIIT LR+ +CP C L + +
Sbjct: 26 VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 85
Query: 101 LYPNFLLDKLLKK 113
L P+ D L+ K
Sbjct: 86 LRPDPNFDALISK 98
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 55 CPICM----QIIKEAFL---TACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFL 106
CPICM +I++ L T CGH FC C+ L+N + CP C + + + +P ++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS----DCPCC 92
V++L ++++CPIC+ I+++ CGH+FC C IT + S CP C
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKC-ITQIGETSCGFFKCPLC 63
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS----DCPCCGHYLTNNQL 101
V++L ++++CPIC+ I+++ CGH+FC C IT + S CP C + N +
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKC-ITQIGETSCGFFKCPLCKTSVRKNAI 72
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNK 435
++ + ++ F R ++ + + +K++DF NEP+ + + R L C+ +
Sbjct: 191 SSTLHAVTFLRTPEILTVNSIGQ-LKIWDFRQQGNEPSQI---LSLTGDRVPLHCVDRHP 246
Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVME---YEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492
++ +A+ +G++++WDV +Q M + HE W V F + P L + S+D
Sbjct: 247 NQQHVVATGGQDGMLSIWDV--RQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGS 304
Query: 493 VLY 495
+ +
Sbjct: 305 LWH 307
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
L+ ++ C IC + EA C HSFC CI ++ K +CP C
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPIC 93
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
L+ ++ C IC + EA C HSFC CI ++ K +CP C
Sbjct: 61 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPIC 104
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
L+ ++ C IC + EA C HSFC CI ++ K +CP C
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPIC 93
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 46 VSELDKDMLCPICM-QIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
+SEL +LC IC +I +T C H+FC CI+ H + CP C
Sbjct: 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 44 VGVSELDKDMLCPICM-QIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLY 102
+ ++EL+ ++C +C I + C HSFC CI+ +L CP C + +
Sbjct: 3 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPL 62
Query: 103 PNFLLDKLLK 112
N DK L+
Sbjct: 63 LNIRSDKTLQ 72
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 44 VGVSELDKDMLCPICM-QIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLY 102
+ ++EL+ ++C +C I + C HSFC CI+ +L CP C + +
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPL 66
Query: 103 PNFLLDKLLK 112
N DK L+
Sbjct: 67 LNIRSDKTLQ 76
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 44 VGVSELDKDMLCPICM-QIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLY 102
+ ++EL+ ++C +C I + C HSFC CI+ +L CP C + +
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPL 66
Query: 103 PNFLLDKLLK 112
N DK L+
Sbjct: 67 LNIRSDKTLQ 76
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 55 CPICMQIIKE-AFLTACGHSFCYMCIITHLRNKSDCPCC 92
CPIC++ + C H+FCY+CI +R CP C
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLC 46
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 55 CPICMQIIKEAFLTACGHSFCYMCII---THLRNKSDCPCC 92
C +C++ +KE + CGH+FC CI L CP C
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 49 LDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLL 107
+D + C IC + A + C H++C +CI L K+ CP C +T L N +L
Sbjct: 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRIL 78
Query: 108 DKLLK 112
D+L+K
Sbjct: 79 DELVK 83
>pdb|3KNV|A Chain A, Crystal Structure Of The Ring And First Zinc Finger
Domains Of Traf2
Length = 141
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-KSDCPCCGH 94
++L+ LC C +++ F CGH +C C+ + L + +C C H
Sbjct: 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVH 74
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 55 CPICM----QIIKEAFL---TACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFL 106
CPICM +I++ L T CGH FC C+ L+N + CP C + + + +P ++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 55 CPICM----QIIKEAFL---TACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFL 106
CPICM +I++ L T CGH FC C+ L+N + CP C + + + +P ++
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 55 CPICM----QIIKEAFL---TACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFL 106
CPICM +I++ L T CGH FC C+ L+N + CP C + + + +P ++
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 418 PVVEMPTRSK-LSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY--EEHEKRAWSV 474
PV+ + +K + ++W+ ++N + S+ + ++ VWDV T +V+ + H +SV
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 475 DFSR 478
D+SR
Sbjct: 183 DWSR 186
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV-------TTQQSVMEYEE 466
D + P+V T L ++W + N IAS + V VW++ ++ V+ E
Sbjct: 71 DKNVPLVXGHTAPVLD-IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 467 HEKRAWSVDFSRTEPSMLVSGSDDCKVL 494
H KR V + T ++L+S D +L
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVIL 157
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL------RNKSDCPCCGHYLTNNQLY 102
+ +++ CPIC++++ + CGHSFC C+ + + +S CP C +
Sbjct: 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75
Query: 103 PN 104
PN
Sbjct: 76 PN 77
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 418 PVVEMPTRSK-LSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY--EEHEKRAWSV 474
PV+ + +K + ++W+ ++N + S+ + ++ VWDV T +V+ + H +SV
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 475 DFSR 478
D+SR
Sbjct: 183 DWSR 186
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 431 LSWNKFSKNRIASSDYEGIVTVWDV-------TTQQSVMEYEEHEKRAWSVDFSRTEPSM 483
++W + N IAS + V VW++ ++ V+ E H KR V + T ++
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 484 LVSGSDDCKVL 494
L+S D +L
Sbjct: 147 LLSAGCDNVIL 157
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 55 CPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCC 92
C IC Q + +T C H FC C + H R C C
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 55
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 55 CPICM----QIIKEAFL---TACGHSFCYMCIITHLRNKSDCPCC 92
CPICM +I++ L T CGH FC C+ L+N + CP C
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 62
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQ-LYP 103
+ +L++ +C C +++ + T C H+ C C+ + + CP C H L N + P
Sbjct: 72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIP 131
Query: 104 NFLLDKLL 111
N +L LL
Sbjct: 132 NEILQTLL 139
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 203
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 122
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 178
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 52 DMLCPICMQIIKEAF-LTACGHSFCYMCIITHL--RNKSDCPCCGHYLTNNQLYPNFLL- 107
++LC IC I+ +A + CG+S+C CI T L ++ CP C N + P+ L+
Sbjct: 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ----NDVSPDALIA 68
Query: 108 DKLLKK 113
+K L++
Sbjct: 69 NKFLRQ 74
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 203
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 122
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 178
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 203
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 122
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 178
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 151 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 199
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 200 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 257
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 118
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 174
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 49 LDKDMLCPICMQIIKEA----FLTACGHSFCYMCIITHLRNKSDCPCC 92
+D + C +C+ +++ FL CGH F C+ L + S CP C
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLC 49
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 169 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 217
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 218 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 275
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 136
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 192
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 206
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 125
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 181
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 200
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 119
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 175
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 205
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 206 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 263
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 124
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 180
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 46 VSELDKDMLCPICMQIIK---EAFLTACGHSFCYMCIITHLRNKSDCPCC 92
V EL+ LC +C++ K E + C H+F C+I L + CP C
Sbjct: 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 148 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 196
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 197 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 254
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 115
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 171
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 206
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 125
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 181
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 206
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 125
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 181
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 200
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 119
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 175
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 201
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 202 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 259
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 120
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 176
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 203
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 122
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + H +V F+R + S++VS S D C++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 178
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 357 RYSRLRVIAELRHGDIFHSA-----NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE 411
+Y +L +IAELRH ++ N V+ + + D T + +++++ +
Sbjct: 84 KYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLN 143
Query: 412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRA 471
+ H R+ + + WNK I S D E + +W+V + + +E E
Sbjct: 144 VLNFH--------RAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGG 194
Query: 472 WSVD 475
S++
Sbjct: 195 SSIN 198
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 52 DMLCPICMQIIKEAF-LTACGHSFCYMCIITHL--RNKSDCPCC 92
++LC IC I+ +A + CG+S+C CI T L ++ CP C
Sbjct: 15 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 58
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 224
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 225 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 282
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 143
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 199
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 37/183 (20%)
Query: 312 ECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGD 371
E Y Q + Q KQE D +++ E N T SRL V H D
Sbjct: 581 EVYQQAKLQ------AKQEVDNGMLYLEWINK---------KNITNLSRLVVRP---HTD 622
Query: 372 -IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS-KLS 429
++H+ F D Q A+ G + ++VF A+ ++E+ ++
Sbjct: 623 AVYHAC-------FSEDGQRIASCGADKTLQVF--------KAETGEKLLEIKAHEDEVL 667
Query: 430 CLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV-SGS 488
C +++ IA+ + V +W+ T + V Y+EH ++ F+ + +L+ +GS
Sbjct: 668 CCAFST-DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS 726
Query: 489 DDC 491
DC
Sbjct: 727 SDC 729
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 441 IASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
IA D G + + ++ + +H+K W + F+ E + L+S SDD ++
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKT-LISSSDDAEI 1033
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 222
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 280
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 141
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + + H +V F+R + S++VS S D C++
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 197
>pdb|3BHS|A Chain A, Nitrosomonas Europaea Rh50 And Mechanism Of Conduction By
Rhesus Protein Family Of Channels
Length = 406
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%)
Query: 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG 395
+ R G++A + V T Y LR H HS + V EF L A
Sbjct: 37 VRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTPHSVDAVIYAEFAVATGLIAMGA 96
Query: 396 VSRRIKVFDFA 406
V R++VF +A
Sbjct: 97 VLGRLRVFQYA 107
>pdb|3B9W|A Chain A, The 1.3 A Resolution Structure Of Nitrosomonas Europaea
Rh50 And Mechanistic Implications For Nh3 Transport By
Rhesus Family Proteins
Length = 407
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%)
Query: 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG 395
+ R G++A + V T Y LR H HS + V EF L A
Sbjct: 38 VRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTPHSVDAVIYAEFAVATGLIAMGA 97
Query: 396 VSRRIKVFDFA 406
V R++VF +A
Sbjct: 98 VLGRLRVFQYA 108
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 379 VSSIEFD-RDDQLFATAGVSRRIKVFDFASVVNEPADVH--CPVVEMPTRSKLSCLSWNK 435
V +++F+ + D + A+ G + I ++D P++ P M + ++ L+WN+
Sbjct: 116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ 175
Query: 436 FSKNRIASSDYEGIVTVWDVTTQQSVM 462
+ AS+ ++WD+ ++ V+
Sbjct: 176 SLAHVFASAGSSNFASIWDLKAKKEVI 202
>pdb|3B9Y|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
pdb|3B9Z|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
Complexed With Carbon Dioxide
Length = 388
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%)
Query: 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG 395
+ R G++A + V T Y LR H HS + V EF L A
Sbjct: 32 VRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTPHSVDAVIYAEFAVATGLIAMGA 91
Query: 396 VSRRIKVFDFA 406
V R++VF +A
Sbjct: 92 VLGRLRVFQYA 102
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVNEPADVHCPVVEMPTRSKLSCLSWNKF 436
VS++ F+RD L ++ +++D AS + D P V S+ KF
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-----------SFVKF 203
Query: 437 SKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV--DFSRTEPSMLVSGSDD 490
S N I ++ + + +WD + + + Y H+ + + +FS T +VSGS+D
Sbjct: 204 SPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438
+S + + D L +A + +K++D +S C + + C ++N S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS- 122
Query: 439 NRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD--CKV 493
N I S ++ V +WDV T + H +V F+R + S++VS S D C++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRI 178
>pdb|2XZM|P Chain P, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|P Chain P, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 149
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 210 YRARDRYSVKLRMLGDDSNTRKSWLS---SIDKNSSGIITSSLNARGGSSAGSLQNKKGD 266
YR R K+++LG+ NTR+S+ I + S IT L+ + G + S+Q+KK D
Sbjct: 87 YRLR-----KVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKKSD 141
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 437 SKNRIASSDYEGIVTVWDVTT--QQSVMEYEEHEKRAWSVDFSRTEPSM-LVSGSDDCKV 493
S+ +ASS Y+ V +W + V HE WS DF +TE L SGSDD V
Sbjct: 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 376 ANIVSSIEFDRDDQLFA-TAGVSRRIKVFD-----FASVVNEPADVHCPVVEMPTRSKLS 429
+ V +EF D F T G R+I FD F + + + P + +
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE--------PVQGGIF 257
Query: 430 CLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY 464
LSW + A+ + + VWDVTT + V ++
Sbjct: 258 ALSW--LDSQKFATVGADATIRVWDVTTSKCVQKW 290
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 376 ANIVSSIEFDRDDQLFA-TAGVSRRIKVFD-----FASVVNEPADVHCPVVEMPTRSKLS 429
+ V +EF D F T G R+I FD F + + + P + +
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE--------PVQGGIF 257
Query: 430 CLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY 464
LSW + A+ + + VWDVTT + V ++
Sbjct: 258 ALSW--LDSQKFATVGADATIRVWDVTTSKCVQKW 290
>pdb|2X53|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
Length = 298
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 133 LQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDL 192
+ Q G+ V S+ E K + E E N Q++ DF++ + +K L E QT++
Sbjct: 42 IWQSNGIGVMGTRSITQPQIEFKLETFGESLEENYQLMKDFVNDILSKKFVTL-EYQTEI 100
Query: 193 HYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLS----SIDKNSSGIITSS 248
+ D+ + + + Y +S K+ D T+ W + + DK +G + +
Sbjct: 101 FQVYADLALADVTKTEGYGKNGTFSEKITF---DIITK--WYTYENLTFDKIQNGKVIAG 155
Query: 249 LN-ARGGSSAGSLQNKKG 265
++ GG++ G+ + KG
Sbjct: 156 MSKIYGGTAPGNYKYIKG 173
>pdb|2X54|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X5A|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
Length = 298
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 133 LQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDL 192
+ Q G+ V S+ E K + E E N Q++ DF++ + +K L E QT++
Sbjct: 42 IWQSNGIGVMGTRSITQPQIEFKLETFGESLEENYQLMKDFVNDILSKKFVTL-EYQTEI 100
Query: 193 HYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLS----SIDKNSSGIITSS 248
+ D+ + + + Y +S K+ D T+ W + + DK +G + +
Sbjct: 101 FQVYADLALADVTKTEGYGKNGTFSEKITF---DIITK--WYTYENLTFDKIQNGKVIAG 155
Query: 249 LN-ARGGSSAGSLQNKKG 265
++ GG++ G+ + KG
Sbjct: 156 MSKIYGGTAPGNYKYIKG 173
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF-- 436
V I+F + T S R++++++ + V + V E P R+ KF
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS---IQVTETPVRA-------GKFIA 65
Query: 437 SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
KN I + + V++ T + V+++E H S+ T+P +L SGSDD V
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTV 121
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 39/183 (21%)
Query: 312 ECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGD 371
E Y Q + Q KQE D ++ E N T SRL V H D
Sbjct: 575 EVYRQAKLQ------AKQEGDTGRLYLEWINK---------KTIKNLSRLVVRP---HTD 616
Query: 372 -IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSC 430
++H+ F +D Q A+ G + ++VF A + D+ E+ L C
Sbjct: 617 AVYHAC-------FSQDGQRIASCGADKTLQVFK-AETGEKLLDIKAHEDEV-----LCC 663
Query: 431 LSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS-RTEPSMLVSG 487
FS + IA+ + V +WD T + V Y+EH ++ F+ ++ +L +G
Sbjct: 664 ----AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG 719
Query: 488 SDD 490
S+D
Sbjct: 720 SND 722
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 39/183 (21%)
Query: 312 ECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGD 371
E Y Q + Q KQE D ++ E N T SRL V H D
Sbjct: 582 EVYRQAKLQ------AKQEGDTGRLYLEWINK---------KTIKNLSRLVVRP---HTD 623
Query: 372 -IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSC 430
++H+ F +D Q A+ G + ++VF A + D+ E+ L C
Sbjct: 624 AVYHAC-------FSQDGQRIASCGADKTLQVFK-AETGEKLLDIKAHEDEV-----LCC 670
Query: 431 LSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS-RTEPSMLVSG 487
FS + IA+ + V +WD T + V Y+EH ++ F+ ++ +L +G
Sbjct: 671 ----AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG 726
Query: 488 SDD 490
S+D
Sbjct: 727 SND 729
>pdb|3MMR|A Chain A, Structure Of Plasmodium Falciparum Arginase In Complex
With Abh
pdb|3SL0|A Chain A, Crystal Structure Of P. Falciparum Arginase Complexed With
2-Amino-6- Borono-2-(Difluoromethyl)hexanoic Acid
pdb|3SL1|A Chain A, Crystal Structure Of P. Falciparum Arginase Complexed With
2-Amino-6- Borono-2-Methylhexanoic Acid
Length = 413
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 260 LQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFN-DLQECYLQKR 318
L N K +G N +G+ ++++ ++ + N +R + F+ +L + +
Sbjct: 123 LSNNKMNGYVNHNFYGNYEENNVISTNDKYKNNCYYDNIRNIKEIGIFSKNLFDTMSNEL 182
Query: 319 RQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDI 372
R+ KN + G + G+A F S+L++ Y LRVI HGDI
Sbjct: 183 RK------------KNFVLNIGGDHGVA-FSSILSSLQMYQNLRVIWIDAHGDI 223
>pdb|2WZP|P Chain P, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
pdb|2WZP|Q Chain Q, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
Length = 326
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 133 LQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDL 192
+ Q G+ V S+ E K + E E N Q++ DF++ + +K L E QT++
Sbjct: 70 IWQSNGIGVMGTRSITQPQIEFKLETFGESLEENYQLMKDFVNDILSKKFVTL-EYQTEI 128
Query: 193 HYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLS----SIDKNSSGIITSS 248
+ D+ + + + Y +S K+ D T+ W + + DK +G + +
Sbjct: 129 FQVYADLALADVTKTEGYGKNGTFSEKITF---DIITK--WYTYENLTFDKIQNGKVIAG 183
Query: 249 LN-ARGGSSAGSLQNKKG 265
++ GG++ G+ + KG
Sbjct: 184 MSKIYGGTAPGNYKYIKG 201
>pdb|3RE9|A Chain A, Crystal Structure Of Sortasec1 From Streptococcus Suis
Length = 187
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 333 KNIIHREGYN--AGLADFQSVLTTFTRYSRLRVIAEL---RHGDIFHSANIVSSIEFDRD 387
K + H EG + G +D +VLT T + R+ +L + GD F+ NIV ++ ++ D
Sbjct: 69 KGVGHLEGTSLPIGGSDTHTVLTAHTGLPKARLFTDLTKVKIGDTFYIHNIVETLAYEVD 128
Query: 388 DQLFA 392
+ A
Sbjct: 129 QIVVA 133
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 55 CPICMQIIKEAFLTACGHSFCYMCI 79
C IC+Q C H FCY+C+
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLCV 42
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
S ++G + +WD+TT + + H K SV FS ++ +VSGS D
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRD 126
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
S ++G + +WD+TT + + H K SV FS ++ +VSGS D
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRD 149
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 388 DQLFATAGVSRRIKVFDFAS-VVNEPA---DVHCPVVEMPTRSKLSCLSWNKFSKNRIAS 443
+ LF + +++ ++D S ++P+ D H ++++CLS+N +S+ +A+
Sbjct: 242 ESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHT--------AEVNCLSFNPYSEFILAT 293
Query: 444 SDYEGIVTVWDV-TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
+ V +WD+ + + +E H+ + V +S ++L S D
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 388 DQLFATAGVSRRIKVFDFAS-VVNEPA---DVHCPVVEMPTRSKLSCLSWNKFSKNRIAS 443
+ LF + +++ ++D S ++P+ D H ++++CLS+N +S+ +A+
Sbjct: 242 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHT--------AEVNCLSFNPYSEFILAT 293
Query: 444 SDYEGIVTVWDV-TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
+ V +WD+ + + +E H+ + V +S ++L S D
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 428 LSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487
++CL +F NRI S + + VW T + + H WS S+ ++++SG
Sbjct: 122 ITCL---QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISG 175
Query: 488 SDD 490
S D
Sbjct: 176 STD 178
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF-- 436
V I+F + T S R++++++ + V + V E P R+ KF
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS---IQVTETPVRA-------GKFIA 65
Query: 437 SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
KN I + + V++ T + V+++E H S+ T+P +L SGSDD V
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTV 121
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
S+ ++ + +WDV T ++ + H+ SVD + + SM++SGS D
Sbjct: 76 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRD 122
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 55 CPICMQIIKEAFLTA----CGHSFCYMCIITHLRNKSDCPCCGH 94
CPIC++ I + + A CGH C L+ CP C H
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 381 SIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNR 440
++ F D Q AT ++ +F S E + TR K
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKE--------YSLDTRGKFILSIAYSPDGKY 178
Query: 441 IASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
+AS +GI+ ++D+ T + + E H S+ FS + +LV+ SDD +
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYI 230
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 364 IAELRHGDIFHS----ANIVSSIEFDRDDQLFATAGVSRRIKVFD-----FASVVNEPAD 414
I ++ G + H+ A + S+ F D QL TA IK++D A ++ A
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV 474
V P SS + V VWDV T+ V + +H+ + W V
Sbjct: 250 WVLNVAFCP-------------DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296
Query: 475 DFSRTEPSMLVSGSDDCKV 493
++ S +VS DD ++
Sbjct: 297 KYNG-NGSKIVSVGDDQEI 314
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
S+ ++ + +WDV T ++ + H+ SVD + + SM++SGS D
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRD 128
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
S+ ++ + +WDV T ++ + H+ SVD + + SM++SGS D
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRD 128
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
S+ ++ + +WDV T ++ + H+ SVD + + SM++SGS D
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRD 128
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 51 KDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR-NKSDCPCCGHYLTNNQLYPNFLLD 108
K + C IC I+ + T+C H FC +CI+ L+ S CP C YP F D
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCR--------YPCFPTD 72
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF-- 436
V I+F + T S R++++++ + V + V E P R+ KF
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS---IQVTETPVRA-------GKFIA 65
Query: 437 SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
KN I + + V++ T + V+++E H S+ T+P +L SGSDD V
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTV 121
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF-- 436
V I+F + T S R++++++ + V + V E P R+ KF
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS---IQVTETPVRA-------GKFIA 65
Query: 437 SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
KN I + + V++ T + V+++E H S+ T+P +L SGSDD V
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTV 121
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490
S+ ++ + +WDV T ++ + H+ SVD + + SM++SGS D
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRD 128
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 426 SKLSCLSWNKFSKNRIASSDYEGIVTVWDV-TTQQSVMEYEEHEKRAWSVDFSRTEPSML 484
++++CLS+N +S+ +A+ + V +WD+ + + +E H+ + V +S ++L
Sbjct: 282 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 341
Query: 485 VSGSDD 490
S D
Sbjct: 342 ASSGTD 347
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 426 SKLSCLSWNKFSKNRIASSDYEGIVTVWDV-TTQQSVMEYEEHEKRAWSVDFSRTEPSML 484
++++CLS+N +S+ +A+ + V +WD+ + + +E H+ + V +S ++L
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 339
Query: 485 VSGSDD 490
S D
Sbjct: 340 ASSGTD 345
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 426 SKLSCLSWNKFSKNRIASSDYEGIVTVWDV-TTQQSVMEYEEHEKRAWSVDFSRTEPSML 484
++++CLS+N +S+ +A+ + V +WD+ + + +E H+ + V +S ++L
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337
Query: 485 VSGSDD 490
S D
Sbjct: 338 ASSGTD 343
>pdb|3AJW|A Chain A, Structure Of Flij, A Soluble Component Of Flagellar Type
Iii Export Apparatus
Length = 150
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 132 ALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQ-KVDELKEIQT 190
AL+ ++ KE+D LL E +R +Q AE +++L+D+ + R D I +
Sbjct: 9 ALETLKDLAEKEVDDAARLLGEMRRGCQQ--AEEQLKMLIDYQNEYRSNLNTDMGNGIAS 66
Query: 191 D-----LHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKNSSGII 245
+ +I+ A+E+HR+ L + + + L+ + ++W + D+ ++ +
Sbjct: 67 NRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAAL 126
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 25/141 (17%)
Query: 369 HGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVF------------DFASVVNEPADVH 416
H + H++ +V ++F D + AT G ++ +V+ D ++ +P +++
Sbjct: 58 HKSLDHTS-VVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 115
Query: 417 C---PVVEMPTRSKLSCLSWN-KFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAW 472
P ++ RS C S + KF +A+ + ++ +WD+ ++ VM + HE+ +
Sbjct: 116 TSSSPSSDLYIRS--VCFSPDGKF----LATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
Query: 473 SVDFSRTEPSMLVSGSDDCKV 493
S+D+ + LVSGS D V
Sbjct: 170 SLDYFPSG-DKLVSGSGDRTV 189
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 54 LCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCC 92
LC IC + K+ + CGH C C+ + ++ CP C
Sbjct: 29 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 68
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 54 LCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCC 92
LC IC + K+ + CGH C C+ + ++ CP C
Sbjct: 26 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 65
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 386 RDDQLFATAGVSRRIKVFDFASVVNE--PADVHCPVVEM-----PTRSKLSCLSWNKFSK 438
++ + A++G RR+ V+D + + E P D E+ +K+S SWN
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 387
Query: 439 NRIASSDYEGIVTVW 453
I S + I+ VW
Sbjct: 388 WVICSVSEDNIMQVW 402
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 426 SKLSCLSWNKFSKNRIASSDYEGIVTVWDV-TTQQSVMEYEEHEKRAWSVDFSRTEPSML 484
++++CLS+N +S+ +A+ + V +WD+ + + +E H+ + V +S ++L
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 333
Query: 485 VSGSDD 490
S D
Sbjct: 334 ASSGTD 339
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 51 KDMLCPICM-QIIKEAFLT--ACGHSFCYMCIITHLRNKSDCPCC 92
++M CPIC + +K T C H F C+ L+ CP C
Sbjct: 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 54 LCPICMQIIKEAFLTACGHSFCYMCIIT-HLRNKSDCPCC 92
LC IC + K+ + CGH C C+ + CP C
Sbjct: 28 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 67
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 55 CPICMQ---IIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN 104
CP+C + + + C H F CI+ L CP C LT N
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 45 GVSELDKDML-------CPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDC 89
G L KD + C ICM+I+ E C H+ C C + + S C
Sbjct: 1 GSMALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLC 52
>pdb|1G25|A Chain A, Solution Structure Of The N-Terminal Domain Of The Human
Tfiih Mat1 Subunit
Length = 65
Score = 28.9 bits (63), Expect = 6.2, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 52 DMLCPICMQIIK-----EAFLTACGHSFCYMCI-ITHLRNKSDCPCCG 93
D CP C + + CGH+ C C+ + +R +CP CG
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECG 50
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Query: 384 FDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIAS 443
F + Q A G+ +F+ +S + ++ V + S + + R+ +
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 444 SDYEGIVTVWDVTTQQSVMEY-----EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
+ +WDVTT Q + + H S+ + +M +SGS D V
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
>pdb|4A1N|A Chain A, Human Mitochondrial Endo-Exonuclease
Length = 335
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 255 SSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECY 314
+ G+L K+ DG A+ + Q LTG++++C LS + KRV L+
Sbjct: 3 GAEGALTGKQPDGSAE-KAVLEQFGFPLTGTEARCYTNHALSYDQAKRVPRWV--LEHIS 59
Query: 315 LQKRRQMANQPHTKQESDKNI 335
K A++ H K + D NI
Sbjct: 60 KSKIMGDADRKHCKFKPDPNI 80
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 54 LCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCC 92
LC IC + K+ + CGH C C+ + ++ CP C
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 54 LCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCC 92
LC IC + K+ + CGH C C+ + ++ CP C
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 54 LCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCC 92
LC IC + K+ + CGH C C+ + ++ CP C
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|2VE7|C Chain C, Crystal Structure Of A Bonsai Version Of The Human Ndc80
Complex
pdb|2VE7|D Chain D, Crystal Structure Of A Bonsai Version Of The Human Ndc80
Complex
pdb|3IZ0|D Chain D, Human Ndc80 Bonsai Decorated Microtubule
pdb|3IZ0|F Chain F, Human Ndc80 Bonsai Decorated Microtubule
Length = 250
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 79 IITHLRNKSDCPCCGHYLTNNQLYPN 104
I+ H+RNK G LT N LYPN
Sbjct: 19 IVIHIRNKILTGADGKNLTKNDLYPN 44
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 54 LCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCC 92
LC IC + K+ + CGH C C+ + ++ CP C
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,137,656
Number of Sequences: 62578
Number of extensions: 496836
Number of successful extensions: 1605
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 1440
Number of HSP's gapped (non-prelim): 199
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)