BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048199
(495 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/495 (77%), Positives = 436/495 (88%), Gaps = 9/495 (1%)
Query: 1 MDEVSTEPVVPAVKPDMKPSSTDTAP--QETDAAAAYTAAASTSEVGVSELDKDMLCPIC 58
M+E+ST+PVVPAVKPD + SS E D + SE+G +LDKD+LCPIC
Sbjct: 1 MEEISTDPVVPAVKPDPRTSSVGEGANRHEND-----DGGSGGSEIGAPDLDKDLLCPIC 55
Query: 59 MQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ 118
MQIIK+AFLTACGHSFCYMCIITHLRNKSDCPCC +LTNNQLYPNFLLDKLLKKTSAR
Sbjct: 56 MQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARH 115
Query: 119 ISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLR 178
+SKTASPL+ FR+ALQ+GC VS+KE+D+L++LL+E+KRKMEQEEAERNMQILLDFLHCLR
Sbjct: 116 VSKTASPLDQFREALQRGCDVSIKEVDNLLTLLAERKRKMEQEEAERNMQILLDFLHCLR 175
Query: 179 KQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSID 238
KQKVDEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRMLGDD +TR +W +
Sbjct: 176 KQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPH--E 233
Query: 239 KNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVV 298
KN G ++SL+ RGG+ G+ QNKK +GKAQ +SHG +KD+L+GSDSQ LNQS +S+
Sbjct: 234 KNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMA 293
Query: 299 RKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRY 358
RKKR+HAQFNDLQECYLQKRRQ+A+QP++KQE+DK+++ REGY+ GLADFQSVLTTFTRY
Sbjct: 294 RKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRY 353
Query: 359 SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418
SRLRVIAE+RHGDIFHSANIVSSIEFDRDD+LFATAGVSR IKVFDF+SVVNEPAD+ CP
Sbjct: 354 SRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCP 413
Query: 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
+VEM TRSKLSCLSWNK KN IASSDYEGIVTVWDVTT+QS+MEYEEHEKRAWSVDFSR
Sbjct: 414 IVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSR 473
Query: 479 TEPSMLVSGSDDCKV 493
TEPSMLVSGSDDCKV
Sbjct: 474 TEPSMLVSGSDDCKV 488
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/495 (76%), Positives = 430/495 (86%), Gaps = 12/495 (2%)
Query: 1 MDEVSTEPVVPAVKPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQ 60
M+E S P+VPAV +KP + +T AA + + +S+LDKD LCPICMQ
Sbjct: 1 MEEHSVGPLVPAV---VKPEPSKNFSTDTTAAGTFLLVPT-----MSDLDKDFLCPICMQ 52
Query: 61 IIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQIS 120
IIK+AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN+ L+PNFLLDKLLKKTS RQIS
Sbjct: 53 IIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNFLLDKLLKKTSDRQIS 112
Query: 121 KTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQ 180
KTASP+E+FRQA+Q+GC V++KE+D+L+ LL+EKKRKMEQEEAERNMQILLDFLHCLRKQ
Sbjct: 113 KTASPVEHFRQAVQKGCEVTMKELDTLLLLLTEKKRKMEQEEAERNMQILLDFLHCLRKQ 172
Query: 181 KVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKN 240
KVDELKE+QTDL +IKEDI AVE+HR+DLYRARDRYSVKLRML DDS RKS SS+D N
Sbjct: 173 KVDELKEVQTDLQFIKEDIGAVEKHRMDLYRARDRYSVKLRML-DDSGGRKSRHSSMDLN 231
Query: 241 SSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGH--QRKDSLTGSDSQCLNQSGLSVV 298
SSG+ +S LN RGG S+GS KK DGK+Q +SHGH QR+D +TGSDSQ +NQSGL++V
Sbjct: 232 SSGLASSPLNLRGGLSSGS-HTKKNDGKSQISSHGHGIQRRDPITGSDSQYINQSGLALV 290
Query: 299 RKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRY 358
RKKRVH QFNDLQECYLQKRRQ A++PH +QE D N I REGY+ GL DFQSVLTTFTRY
Sbjct: 291 RKKRVHTQFNDLQECYLQKRRQAADKPHGQQERDTNFISREGYSCGLDDFQSVLTTFTRY 350
Query: 359 SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418
SRLRVIAE+RHGDIFHSANIVSSIEFDRDD LFATAGVSRRIKVFDF++VVNEP D HCP
Sbjct: 351 SRLRVIAEIRHGDIFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCP 410
Query: 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478
VVEM TRSKLSCLSWNK++KN+IASSDYEGIVTVW +TT++S+MEYEEHEKRAWSVDFSR
Sbjct: 411 VVEMTTRSKLSCLSWNKYAKNQIASSDYEGIVTVWTMTTRKSLMEYEEHEKRAWSVDFSR 470
Query: 479 TEPSMLVSGSDDCKV 493
T+PSMLVSGSDDCKV
Sbjct: 471 TDPSMLVSGSDDCKV 485
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/457 (35%), Positives = 250/457 (54%), Gaps = 66/457 (14%)
Query: 52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN-NQLYPNFLLDKL 110
D +CPIC +I+EA++T CGHSFCY CI L + + CP C + + N + LYPNFL+++L
Sbjct: 133 DFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNEL 192
Query: 111 LKKTSAR------QISKTASPLENFR-QALQQGCG-----VSVKEIDSLMSLLSEKKRKM 158
+ K R ++ + S R Q Q G + + ++ ++ LL +KK+++
Sbjct: 193 ILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDWLGTDQDNLDLANVNLMLELLVQKKKQL 252
Query: 159 EQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSV 218
E E +QIL++FL R+ K ++L++IQ +L ++EDI VE LY
Sbjct: 253 EAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMS-GLYSP------ 305
Query: 219 KLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQR 278
+ +DS + + + S II S+ ++ +GS Q KK
Sbjct: 306 ----VSEDSTVPQ--FEAPSPSHSSIIDSTEYSQPPGFSGSSQTKK-------------- 345
Query: 279 KDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKR-RQMANQPHTKQESDKNIIH 337
Q S L+ R+KR+ A F DL++CY R ++++ T + D
Sbjct: 346 ---------QPWYNSTLA-SRRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD----- 390
Query: 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGV 396
+FQ L+ FTRY+ +R +A L + D+++ ++IVSSIEFDRD FA AGV
Sbjct: 391 ---------EFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV 441
Query: 397 SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456
+++IKV+++ +V+ + D+H P EM SK+SC+SW+ + KN +ASSDYEG V +WD
Sbjct: 442 TKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF 501
Query: 457 TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
T Q Y+EHEKR WSVDF+ +P +L SGSDD KV
Sbjct: 502 TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKV 538
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 161/457 (35%), Positives = 250/457 (54%), Gaps = 66/457 (14%)
Query: 52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN-NQLYPNFLLDKL 110
D +CPIC +I+EA++T CGHSFCY CI L + + CP C + + N + LYPNFL+++L
Sbjct: 135 DFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNEL 194
Query: 111 LKKTSAR------QISKTASPLENFR-QALQQGCG-----VSVKEIDSLMSLLSEKKRKM 158
+ K R ++ + S R Q Q G + + ++ ++ LL +KK+++
Sbjct: 195 ILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDLLGTDQDNLDLANVNLMLELLVQKKKQL 254
Query: 159 EQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSV 218
E E +QIL++FL R+ K ++L++IQ +L ++EDI VE LY
Sbjct: 255 EAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMS-GLYSP------ 307
Query: 219 KLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQR 278
+ +DS + + + S II S+ ++ +G+ Q KK
Sbjct: 308 ----VSEDSTVPQ--FEAPSPSHSSIIDSTEYSQPPGFSGTSQTKK-------------- 347
Query: 279 KDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKR-RQMANQPHTKQESDKNIIH 337
Q S L+ R+KR+ A F DL++CY R ++++ T + D
Sbjct: 348 ---------QPWYNSTLA-SRRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD----- 392
Query: 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGV 396
+FQ L+ FTRY+ +R +A L + D+++ ++IVSSIEFDRD FA AGV
Sbjct: 393 ---------EFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV 443
Query: 397 SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456
+++IKV+++ +V+ + D+H P EM SK+SC+SW+ + KN +ASSDYEG V +WD
Sbjct: 444 TKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF 503
Query: 457 TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
T Q Y+EHEKR WSVDF+ +P +L SGSDD KV
Sbjct: 504 TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKV 540
>sp|Q9SYX2|SPA1_ARATH Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1
PE=1 SV=1
Length = 1029
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 126/227 (55%), Gaps = 19/227 (8%)
Query: 286 DSQCLNQSGLSV--VRKKRVHAQFNDLQECYLQKRRQM-ANQPHTKQESDKNIIHR---- 338
D C S L V R+ + L++ Y R Q+ + SDK + R
Sbjct: 607 DEHCTTSSALFVPTANTDRLMSNIRQLEDAYFFMRSQINLSSSAATARSDKTLKDRDRCS 666
Query: 339 EGYNAG------------LADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR 386
E N L F L F RYS+ +R GD+ +SA++V S+ FD
Sbjct: 667 ENQNENQDMSTKGKSSDQLEVFFEGLCKFARYSKFETCGTIRSGDLLNSASVVCSLSFDP 726
Query: 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY 446
D++ A AG+S++IK+FDF + +NE VH P+VEM +SKLSC+ WN + KN +AS+DY
Sbjct: 727 DEEHIAAAGISKKIKIFDFNAFMNESVGVHYPLVEMVNKSKLSCVCWNSYIKNYLASTDY 786
Query: 447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
+G+V +WD T Q +Y EH+KRAWSVDFS ++P+ VSGSDDC V
Sbjct: 787 DGVVQIWDAGTGQGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSV 833
>sp|Q9T014|SPA2_ARATH Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2
Length = 1036
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 105/149 (70%)
Query: 345 LADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFD 404
+ F L + RYS+ LR ++ +++N++ S+ FDRD+ FATAGVS++IK+++
Sbjct: 692 VGAFFDGLCKYARYSKFETRGVLRTSELNNTSNVICSLGFDRDEDYFATAGVSKKIKIYE 751
Query: 405 FASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY 464
F S+ NE D+H P +EMP RSKLS + WN + +N +ASSDY+GIV +WDVTT Q++ +
Sbjct: 752 FNSLFNESVDIHYPAIEMPNRSKLSGVCWNNYIRNYLASSDYDGIVKLWDVTTGQAISHF 811
Query: 465 EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493
EHEKRAWSVDFS P+ L SGSDDC V
Sbjct: 812 IEHEKRAWSVDFSEACPTKLASGSDDCSV 840
>sp|Q94BM7|SPA4_ARATH Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1
Length = 794
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 108/146 (73%)
Query: 348 FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS 407
F L + +S+LRV A+L+ GD+ +S+N+V +I FDRD + FATAGV+++IK+F+ S
Sbjct: 456 FLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECES 515
Query: 408 VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH 467
++ + D+H PVVE+ +RSKLS + WN + K+++ASS++EG+V VWDV Q V E +EH
Sbjct: 516 IIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEH 575
Query: 468 EKRAWSVDFSRTEPSMLVSGSDDCKV 493
EKR WS+D+S +P++L SGSDD V
Sbjct: 576 EKRVWSIDYSSADPTLLASGSDDGSV 601
>sp|Q9LJR3|SPA3_ARATH Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1
Length = 845
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 61/376 (16%)
Query: 151 LSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLY 210
L E++ +E + + LL+FL ++++K + +Q + + DI V + ++ L
Sbjct: 304 LEEREAAIELRDRIEEQESLLEFLLLIQQRKQESAYRLQDTVSLLSSDIEQVVKRQLILK 363
Query: 211 RARDRYSVKLRMLGDDSNTRKSWLSSIDKN----SSGIITSSLNARGGSSAGSLQNKKGD 266
+ R S LS K+ +SG S A SA K+
Sbjct: 364 K------------------RGSSLSDFSKDDHQYTSGQPLMSFQANEEPSAFLASRKRVR 405
Query: 267 GKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECY-LQKRRQMANQP 325
A +G + + GS +++ R+ F L+ Y L +RRQM
Sbjct: 406 QGILALENGVEVDEESQGS----------TLLESSRLMRNFKKLESVYFLTRRRQMKAAA 455
Query: 326 -------HTKQESD--------------------KNIIHREGYNAGLAD-FQSVLTTFTR 357
H+ S+ K + + G D F L +
Sbjct: 456 SGKSLTRHSPLSSENGRGSMIVSEKSSVSNPVAPKAFFNNDSRQGGWIDPFLEGLCRYLS 515
Query: 358 YSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417
+S+LRV A+L+ GD+ +S+N+V ++ FDR+ +LFATAGV+++IK+F+ S+VN+ D+H
Sbjct: 516 FSQLRVKADLKQGDLLNSSNLVCALAFDREGELFATAGVNKKIKIFECNSIVNDNRDIHY 575
Query: 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS 477
PVVE+ RSKLS L WN + K++IASS+++G+V +WDV Q V E +EH+KR WS+D S
Sbjct: 576 PVVELAGRSKLSSLCWNSYIKSQIASSNFDGVVQIWDVARSQLVTEMKEHKKRVWSIDIS 635
Query: 478 RTEPSMLVSGSDDCKV 493
+P++L SGSDD V
Sbjct: 636 SADPTLLASGSDDGTV 651
>sp|Q9LTJ6|RUP1_ARATH WD repeat-containing protein RUP1 OS=Arabidopsis thaliana GN=RUP1
PE=1 SV=1
Length = 385
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 6/124 (4%)
Query: 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE--MPTRSKLSCLS 432
++ + +IEFD ++ AT G++R+I+ + +S++ E D H E + T +KLS L
Sbjct: 70 GSDAIGAIEFDPTGEIIATGGIARKIRSYRLSSLL-ESRDDHVTASESYICTPAKLSSLK 128
Query: 433 WNK-FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-EKRAWSVDFSRTEPSML-VSGSD 489
W FS I S DY+G+VT +DV Q V E +EH +R WSVD++ S++ SGSD
Sbjct: 129 WRPDFSGRVIGSGDYDGVVTEYDVEKQVPVSERDEHGGRRIWSVDYTLYNGSLIGASGSD 188
Query: 490 DCKV 493
D V
Sbjct: 189 DGTV 192
>sp|Q9FFA7|RUP2_ARATH WD repeat-containing protein RUP2 OS=Arabidopsis thaliana GN=RUP2
PE=1 SV=1
Length = 368
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 14/128 (10%)
Query: 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV--NEPADVHCPVVE--------MPTRS 426
+++ +IEFD D + ATAG+SR+I+ + S++ N + V+ + T +
Sbjct: 41 DVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRNNAVSGTGVSFVDQATACEYYICTPA 100
Query: 427 KLSCLSWNKFSKNR-IASSDYEGIVTVWDVTTQQSVMEYEEH-EKRAWSVDFSRTEPSML 484
KLS L W S R I S DY+G+V +D+ + V E +EH +R WSVD++R +
Sbjct: 101 KLSSLRWRPGSGGRVIGSGDYDGVVMEYDLEKRTPVFERDEHGGRRVWSVDYTRHGGAST 160
Query: 485 V--SGSDD 490
V SGSDD
Sbjct: 161 VGASGSDD 168
>sp|P10862|RAD18_YEAST Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RAD18 PE=1 SV=1
Length = 487
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 39 ASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98
+TS + +LD + C IC +K LT CGH+FC +CI THL N+ +CP C
Sbjct: 12 TTTSIPSLYQLDTLLRCHICKDFLKVPVLTPCGHTFCSLCIRTHLNNQPNCPLCLFEFRE 71
Query: 99 NQLYPNFLLDKLLK 112
+ L FL+ ++++
Sbjct: 72 SLLRSEFLVSEIIQ 85
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 41 TSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQ 100
TS +++LD + C IC +K + LT CGHSFC +CI +L+ +S CP C LT +
Sbjct: 18 TSVPQLTDLDSLLRCHICKDFLKASVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTESM 77
Query: 101 LYPNFLLDKL 110
L FL+ ++
Sbjct: 78 LQKEFLVQEI 87
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF 105
+ ELD + C IC +K LT CGH+FC +CI +L N+ CP C H L + L +
Sbjct: 18 LQELDDLLRCHICKDFLKNPVLTPCGHTFCSLCIRGYLSNEPKCPLCLHELRESMLRSEY 77
Query: 106 LLDKLLKK-TSARQ 118
L++++ + +ARQ
Sbjct: 78 LVNEITETYKAARQ 91
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 39 ASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98
A T+ +++LD + C IC +++ LT CGH+FC +CI +L +S CP C L
Sbjct: 16 AGTTIPELADLDSLLRCHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLCLAELRQ 75
Query: 99 NQLYPNFLLDKL 110
N L FL+ +L
Sbjct: 76 NMLQKEFLVGEL 87
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLD 108
+ K + CPIC + ++ F T CGH++CY C++ L+ CP C L Q P +L+
Sbjct: 79 IKKTLECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLY-TQPSPAYLVY 137
Query: 109 KLLKKTSARQISKTASPL 126
+++ +A S + PL
Sbjct: 138 EIMNVVAA---SNSGFPL 152
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 14 KPDMKPSSTDTAPQETDAAAAYTAAASTSEVGVSELDKDMLCPICMQIIKEAFLTACGHS 73
+P+ +P ++ AA AA + +++ CP+C+++ K+ + ACGH+
Sbjct: 112 EPEPEPKKAKVEDKDASKTAASLGAAG-------DFAEELTCPLCVELFKDPVMVACGHN 164
Query: 74 FCYMCIITHLRNKSD--CPCCGHYLTNNQLYPNFLLDKLLKK---TSARQISKTASPLE 127
FC CI +S CP C +T+ + N +L L KK T + K PLE
Sbjct: 165 FCRSCIDKVWEGQSSFACPECKESITDRKYTINRVLANLAKKAACTPVTPVEKKTRPLE 223
>sp|Q865W2|TRI50_PIG E3 ubiquitin-protein ligase TRIM50 OS=Sus scrofa GN=TRIM50 PE=2
SV=1
Length = 486
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 43 EVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIIT---HLRNKSDCPCCGHYLTNN 99
+V V EL+ + CP+C+++ KE + CGHS+C C+++ HL ++ CP C + ++
Sbjct: 4 QVSVPELEDRLQCPVCLEVFKEPLMLQCGHSYCKGCLLSLSRHLDSELRCPVCRQEVDSS 63
Query: 100 QLYPNFLLDKLLK 112
PN L ++++
Sbjct: 64 SSPPNVSLARVIE 76
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 37 AAASTSEVGVS-ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD--CPCCG 93
A+ + S +G + + +++ CP+C+++ K+ + ACGH+FC CI +S CP C
Sbjct: 126 ASKNASSLGAAGDFAEELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECR 185
Query: 94 HYLTNNQLYPNFLLDKLLKK---TSARQISKTASPLE 127
+T+ + N +L L KK T + K PLE
Sbjct: 186 ESITDRKYTINRVLANLAKKAACTPVTPVEKKTRPLE 222
>sp|Q86UV7|TRI73_HUMAN Tripartite motif-containing protein 73 OS=Homo sapiens GN=TRIM73
PE=2 SV=1
Length = 250
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 43 EVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIIT---HLRNKSDCPCCGHYLTNN 99
+V + EL+ + CPIC+++ KE+ + CGHS+C C+++ HL K CP C + +
Sbjct: 4 QVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVVDGS 63
Query: 100 QLYPNFLL 107
PN L
Sbjct: 64 SSLPNVSL 71
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCI--ITHLRNKSDCPCCGHYLTNNQLYPNF 105
+L +++ CPICM+I+++ CGH+FC CI + K CP C + N PN
Sbjct: 9 QLQEEVTCPICMEILQDPVTIDCGHNFCLQCISQVGKTSEKIQCPLCKLSVNKNTFRPNK 68
Query: 106 LLDKLLKK 113
LL L +K
Sbjct: 69 LLASLAEK 76
>sp|Q86UV6|TRI74_HUMAN Tripartite motif-containing protein 74 OS=Homo sapiens GN=TRIM74
PE=2 SV=1
Length = 250
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 43 EVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIIT---HLRNKSDCPCCGHYLTNN 99
+V + EL+ + CPIC+++ KE+ + CGHS+C C+++ HL K CP C + +
Sbjct: 4 QVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVVDGS 63
Query: 100 QLYPNFLL 107
PN L
Sbjct: 64 SSLPNVSL 71
>sp|Q6CHI1|RAD18_YARLI Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RAD18 PE=3 SV=1
Length = 344
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSD-CPCCGHYLTNNQLYP 103
G+ ++D+ + C IC + +T CGH+FC +CI +L N S CP C +QL
Sbjct: 18 GLKDVDETLRCHICKEFFTAPMITGCGHTFCSLCIQRYLTNTSQRCPTCMQEQQISQLRK 77
Query: 104 NFLLDKLLKKTSARQISKTASPLENFRQALQQ 135
N ++ L++ SA++ A+ L ++A +Q
Sbjct: 78 NVTVETLVEHFSAQR----ATILRVVKEAAKQ 105
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 54 LCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLY 102
+C IC IIK+ F+T CGH +C C+ L++ S CP C L N Y
Sbjct: 1091 ICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNAY 1139
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS----DCPCCGHYLTNNQL 101
V++L ++++CPIC+ I+++ CGH+FC C IT + S CP C + N +
Sbjct: 7 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKC-ITQIGETSCGFFKCPLCKTSVRKNAI 65
Query: 102 YPNFLLDKLLKKTSARQISKTAS 124
N LL L++K A Q S+ S
Sbjct: 66 RFNSLLRNLVEKIQALQASEVQS 88
>sp|Q86XT4|TRI50_HUMAN E3 ubiquitin-protein ligase TRIM50 OS=Homo sapiens GN=TRIM50 PE=1
SV=1
Length = 487
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 43 EVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIIT---HLRNKSDCPCCGHYLTNN 99
+V + EL+ + CPIC+++ KE + CGHS+C C+++ HL + CP C + +
Sbjct: 4 QVSLLELEDWLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDGS 63
Query: 100 QLYPNFLLDKLLK 112
PN L ++++
Sbjct: 64 SSLPNVSLARVIE 76
>sp|Q8IYM9|TRI22_HUMAN E3 ubiquitin-protein ligase TRIM22 OS=Homo sapiens GN=TRIM22 PE=1
SV=1
Length = 498
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL-------RNKSDCPCCGHYLTNNQ 100
+++K++ CPIC++++ E CGHSFC CI + R +S CP C
Sbjct: 8 DIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGN 67
Query: 101 LYPNFLLDKLLKKTSARQIS 120
L PN L ++++ ++S
Sbjct: 68 LRPNRHLANIVERVKEVKMS 87
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLY 102
++ + K + CPIC+++IKE T C H FC C++ L K S CP C + +T L
Sbjct: 15 INAMQKILECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
Query: 103 PNF----LLDKLLKKTSARQI 119
+ L+++LLK A Q+
Sbjct: 75 ESTRFSQLVEELLKIIHAFQL 95
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLY 102
++ + K + CPIC+++IKE T C H FC C++ L K S CP C + +T L
Sbjct: 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
Query: 103 PNF----LLDKLLKKTSARQI 119
+ L+++LLK A Q+
Sbjct: 75 ESTRFSQLVEELLKIICAFQL 95
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLY 102
++ + K + CPIC+++IKE T C H FC C++ L K S CP C + +T L
Sbjct: 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
Query: 103 PNF----LLDKLLKKTSARQI 119
+ L+++LLK A Q+
Sbjct: 75 ESTRFSQLVEELLKIICAFQL 95
>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6 OS=Mus musculus GN=Traf6 PE=1 SV=2
Length = 530
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYP-NFL 106
L+ CPIC+ ++EA T CGH FC CII +R+ CP L NQL+P NF
Sbjct: 64 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 123
Query: 107 LDKLLKKT 114
++L T
Sbjct: 124 KREILSLT 131
>sp|A7XUJ6|TRAF6_PIG TNF receptor-associated factor 6 OS=Sus scrofa GN=TRAF6 PE=2 SV=1
Length = 541
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYP-NFL 106
L+ CPIC+ ++EA T CGH FC CII +R+ CP L NQL+P NF
Sbjct: 65 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 124
Query: 107 LDKLLKKT 114
++L T
Sbjct: 125 KREILSLT 132
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLY 102
++ + K + CPIC+++IKE T C H FC C++ L K S CP C + +T L
Sbjct: 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
Query: 103 PNF----LLDKLLKKTSARQI 119
+ L+++LLK A Q+
Sbjct: 75 ESTRFSQLVEELLKIICAFQL 95
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLY 102
++ + K + CPIC+++IKE T C H FC C++ L K S CP C + +T L
Sbjct: 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
Query: 103 PNF----LLDKLLKKTSARQI 119
+ L+++LLK A Q+
Sbjct: 75 ESTRFSQLVEELLKIICAFQL 95
>sp|Q6DJN2|TRF6B_XENLA TNF receptor-associated factor 6-B OS=Xenopus laevis GN=traf6-b
PE=2 SV=1
Length = 556
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYP-NFL 106
L+ CPIC+ ++EA T CGH FC CI+ LR+ CP L NQL+P NF
Sbjct: 66 LESKYECPICLMALREAVQTPCGHRFCKACIVKSLRDAGHKCPVDNEILMENQLFPDNFA 125
Query: 107 LDKLL 111
++L
Sbjct: 126 KREIL 130
>sp|Q3MV19|TRF6A_XENLA TNF receptor-associated factor 6-A OS=Xenopus laevis GN=traf6-a
PE=1 SV=1
Length = 556
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 27 QETDAAAAYTAAASTSEVGVSE-----------LDKDMLCPICMQIIKEAFLTACGHSFC 75
++ D+ +A + +T + V E L+ CPIC+ ++EA T CGH FC
Sbjct: 33 EDADSPSAGLPSGTTQNLDVEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFC 92
Query: 76 YMCIITHLRNKS-DCPCCGHYLTNNQLYP-NFLLDKLL 111
CI+ LRN CP L QL+P NF ++L
Sbjct: 93 KACILKSLRNAGHKCPVDNEILMEKQLFPDNFAKREIL 130
>sp|Q3ZCC3|TRAF6_BOVIN TNF receptor-associated factor 6 OS=Bos taurus GN=TRAF6 PE=2 SV=1
Length = 542
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYP-NFL 106
L+ CPIC+ ++EA T CGH FC CII +R+ CP L NQL+P NF
Sbjct: 65 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 124
Query: 107 LDKLL 111
++L
Sbjct: 125 KREIL 129
>sp|B6CJY4|TRAF6_CERAT TNF receptor-associated factor 6 OS=Cercocebus atys GN=TRAF6 PE=2
SV=1
Length = 522
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYP-NFL 106
L+ CPIC+ ++EA T CGH FC CII +R+ CP L NQL+P NF
Sbjct: 64 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 123
Query: 107 LDKLL 111
++L
Sbjct: 124 KREIL 128
>sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1
Length = 522
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYP-NFL 106
L+ CPIC+ ++EA T CGH FC CII +R+ CP L NQL+P NF
Sbjct: 64 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 123
Query: 107 LDKLL 111
++L
Sbjct: 124 KREIL 128
>sp|B6CJY5|TRAF6_MACMU TNF receptor-associated factor 6 OS=Macaca mulatta GN=TRAF6 PE=2
SV=1
Length = 522
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYP-NFL 106
L+ CPIC+ ++EA T CGH FC CII +R+ CP L NQL+P NF
Sbjct: 64 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 123
Query: 107 LDKLL 111
++L
Sbjct: 124 KREIL 128
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 43 EVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIIT---HLRNKSDCPCCGHYLTNN 99
++ V EL + CPIC+++ KE + CGHS+C C+ + HL ++ CP C + +
Sbjct: 4 QLTVPELQDQLQCPICLEVFKEPLMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQSVDCS 63
Query: 100 QLYPNFLLDKLLKK------TSARQISKTASPLENFRQALQQG----CGVSVKEIDSLMS 149
PN L +++ T +PL F + Q+ CG+ ++
Sbjct: 64 SSPPNVSLARVIDALRLPGDTEPTVCVHHRNPLSLFCEKDQEFICGLCGLLGSHQHHRVT 123
Query: 150 LLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDL 209
+S +M++E A R + ELKE D ++E I + +R +
Sbjct: 124 PVSTVYSRMKEELAGR----------------LSELKEQHRD---VEEHIGKLVNNRTRI 164
Query: 210 YRARDRYSVKLR-------MLGDDSNTRKSWLSSIDKNSSGIITS 247
D +S +R L D+ R L ++ ++ G++ S
Sbjct: 165 INESDVFSWVIRREFQELHHLVDEEKARC--LEGVESHTRGLVAS 207
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLYPNF 105
+ K + CPIC+++IKE T C H FC C++ L K S CP C + +T L +
Sbjct: 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77
Query: 106 ----LLDKLLK 112
L+++LLK
Sbjct: 78 RFSQLVEELLK 88
>sp|Q8N448|LNX2_HUMAN Ligand of Numb protein X 2 OS=Homo sapiens GN=LNX2 PE=1 SV=1
Length = 690
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCP 90
+E+D D++C IC+Q + + T CGH+FCY C+ L+ K CP
Sbjct: 42 NEVDDDLVCHICLQPLLQPLDTPCGHTFCYKCLRNFLQEKDFCP 85
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLYPNF 105
+ K + CPIC+++IKE T C H FC C++ L K S CP C + +T L +
Sbjct: 18 MQKILECPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSLQGSA 77
Query: 106 ----LLDKLLK 112
L+++LLK
Sbjct: 78 RFSQLVEELLK 88
>sp|O74747|RAD18_SCHPO Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rhp18 PE=3 SV=1
Length = 387
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLD 108
LD + C IC + + +T+C H+FC CI +LR CP C ++L N +L+
Sbjct: 23 LDSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRAPEQESRLRKNTILE 82
Query: 109 KLLK 112
++L+
Sbjct: 83 EILE 86
>sp|Q28DL4|TRAF6_XENTR TNF receptor-associated factor 6 OS=Xenopus tropicalis GN=traf6
PE=2 SV=1
Length = 558
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYP-NFL 106
L+ CPIC+ ++EA T CGH FC CI+ +R+ CP L NQL+P NF
Sbjct: 66 LESKYECPICLMALREAVQTPCGHRFCKACILKSIRDAGHKCPVDNESLMENQLFPDNFA 125
Query: 107 LDKLL 111
++L
Sbjct: 126 KREIL 130
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 43 EVGVS--ELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKS-DCPCCGHYLTN 98
E+ VS L +++CPIC+ ++K T C H FC CIIT LR+ + +CP C L +
Sbjct: 37 EIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 96
Query: 99 NQ-LYPNFLLDKLLKK 113
+ L P+ D L+ K
Sbjct: 97 KRSLRPDPNFDALISK 112
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 20 SSTDTAPQETDAAAAYT-------AAASTSEVGVSE--LDKDMLCPICMQIIKEAFLTA- 69
+S D AP +T + Y ++E+ VS L +++CPIC+ ++K+ T
Sbjct: 2 TSLDPAPNKTWELSLYELQRKPQEVITDSTEIAVSPRSLHSELMCPICLDMLKKTMTTKE 61
Query: 70 CGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQLY---PNFLL 107
C H FC CI+T LR+ +CP C L + + PNF L
Sbjct: 62 CLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADPNFDL 103
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 42 SEVGVSE--LDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKS-DCPCCGHYLT 97
+E+ VS L +++CPIC+ ++K T C H FC CI+T LR+ + +CP C L
Sbjct: 33 TEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLV 92
Query: 98 NNQ-LYPNFLLDKLLKK 113
+ + L P+ D L+ K
Sbjct: 93 SKRSLRPDPNFDALISK 109
>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltl PE=1 SV=2
Length = 625
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS--DCPCCGHYLTNNQLYPNFLLDKL 110
+ CP+C + KE + CGH+FC CI + S CP C LT + N +L L
Sbjct: 161 LTCPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCPECKEVLTERKYTTNRVLANL 220
Query: 111 LKKTSARQISKTASPLE 127
+KK + K P E
Sbjct: 221 VKKAAVGVKDKDVKPKE 237
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL---RNKSDCPCCGHYLTNNQLYPNF 105
+ K + CPIC+++IKE T C H FC C++ L + S CP C + +T L +
Sbjct: 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKNDITKRSLQEST 77
Query: 106 ----LLDKLLK 112
L+++LLK
Sbjct: 78 RFSQLVEELLK 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,333,857
Number of Sequences: 539616
Number of extensions: 6923101
Number of successful extensions: 29299
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 674
Number of HSP's that attempted gapping in prelim test: 27841
Number of HSP's gapped (non-prelim): 2001
length of query: 495
length of database: 191,569,459
effective HSP length: 122
effective length of query: 373
effective length of database: 125,736,307
effective search space: 46899642511
effective search space used: 46899642511
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)