Query 048199
Match_columns 495
No_of_seqs 492 out of 4992
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0289 mRNA splicing factor [ 100.0 5.2E-32 1.1E-36 250.7 11.2 381 53-495 1-415 (506)
2 KOG0272 U4/U6 small nuclear ri 99.9 4E-25 8.6E-30 204.7 6.1 141 338-495 231-371 (459)
3 KOG0271 Notchless-like WD40 re 99.9 2.2E-22 4.8E-27 184.3 10.9 162 318-495 106-272 (480)
4 KOG0263 Transcription initiati 99.9 4.2E-22 9.2E-27 198.2 11.8 151 327-495 452-603 (707)
5 KOG0272 U4/U6 small nuclear ri 99.9 1.2E-21 2.7E-26 181.7 12.7 147 332-495 309-456 (459)
6 KOG0271 Notchless-like WD40 re 99.9 5.6E-22 1.2E-26 181.6 9.1 143 337-495 335-477 (480)
7 KOG0263 Transcription initiati 99.9 1.2E-21 2.5E-26 195.1 10.1 145 334-495 501-645 (707)
8 PLN00181 protein SPA1-RELATED; 99.9 5.4E-19 1.2E-23 192.5 30.5 197 296-495 377-602 (793)
9 KOG0286 G-protein beta subunit 99.8 3.6E-20 7.7E-25 164.5 12.4 156 323-495 141-341 (343)
10 KOG0279 G protein beta subunit 99.8 3.9E-20 8.4E-25 163.3 12.0 153 326-495 62-218 (315)
11 KOG0284 Polyadenylation factor 99.8 9.9E-21 2.2E-25 174.9 6.6 151 328-495 140-290 (464)
12 KOG0286 G-protein beta subunit 99.8 1.9E-19 4.1E-24 159.9 13.0 115 372-495 141-255 (343)
13 KOG0276 Vesicle coat complex C 99.8 1.6E-19 3.5E-24 175.0 10.9 145 336-495 107-253 (794)
14 KOG0319 WD40-repeat-containing 99.8 5.2E-19 1.1E-23 174.7 12.9 153 325-494 461-614 (775)
15 KOG0279 G protein beta subunit 99.8 5.4E-19 1.2E-23 156.1 11.4 144 337-495 27-176 (315)
16 KOG0273 Beta-transducin family 99.8 7.5E-19 1.6E-23 165.4 12.1 147 333-495 324-478 (524)
17 KOG0266 WD40 repeat-containing 99.8 1.8E-18 4E-23 175.6 15.0 147 333-495 210-360 (456)
18 KOG0266 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 177.3 12.5 150 332-495 165-314 (456)
19 PTZ00421 coronin; Provisional 99.8 1.6E-18 3.5E-23 175.6 13.4 154 338-495 32-194 (493)
20 KOG0282 mRNA splicing factor [ 99.8 1.3E-19 2.9E-24 171.0 5.1 169 311-495 198-368 (503)
21 KOG0264 Nucleosome remodeling 99.8 1.2E-18 2.5E-23 163.7 11.3 151 339-495 191-343 (422)
22 KOG0284 Polyadenylation factor 99.8 3.5E-19 7.6E-24 164.8 6.8 143 336-494 190-332 (464)
23 KOG0645 WD40 repeat protein [G 99.8 4.7E-18 1E-22 149.6 13.3 148 336-495 71-221 (312)
24 KOG0277 Peroxisomal targeting 99.8 1.4E-18 3.1E-23 151.5 9.7 144 337-495 116-261 (311)
25 KOG0295 WD40 repeat-containing 99.8 5.4E-18 1.2E-22 154.9 13.8 172 305-495 174-360 (406)
26 KOG0313 Microtubule binding pr 99.8 1.8E-18 3.9E-23 158.8 10.0 158 322-495 255-414 (423)
27 KOG0293 WD40 repeat-containing 99.8 1.7E-18 3.6E-23 160.4 9.0 156 335-495 233-509 (519)
28 KOG0285 Pleiotropic regulator 99.8 3E-18 6.5E-23 156.1 10.4 143 336-495 161-303 (460)
29 KOG0645 WD40 repeat protein [G 99.8 8.8E-18 1.9E-22 147.9 12.1 147 338-495 27-176 (312)
30 KOG0302 Ribosome Assembly prot 99.7 6E-18 1.3E-22 155.2 10.7 144 341-495 227-374 (440)
31 KOG0291 WD40-repeat-containing 99.7 1.2E-17 2.6E-22 165.5 12.7 145 335-495 359-504 (893)
32 KOG0319 WD40-repeat-containing 99.7 5.7E-18 1.2E-22 167.4 9.5 151 336-495 422-573 (775)
33 KOG0275 Conserved WD40 repeat- 99.7 3.3E-18 7.1E-23 153.9 5.9 151 333-495 220-374 (508)
34 KOG0315 G-protein beta subunit 99.7 4E-17 8.6E-22 142.1 11.9 144 335-495 49-241 (311)
35 PTZ00420 coronin; Provisional 99.7 9E-17 1.9E-21 163.8 16.5 142 344-495 50-193 (568)
36 KOG0277 Peroxisomal targeting 99.7 2.2E-17 4.7E-22 144.2 8.9 143 339-495 74-217 (311)
37 KOG0313 Microtubule binding pr 99.7 3.6E-17 7.8E-22 150.3 10.8 156 325-495 191-372 (423)
38 KOG0276 Vesicle coat complex C 99.7 4.2E-17 9.1E-22 158.4 11.6 144 338-495 67-211 (794)
39 KOG0281 Beta-TrCP (transducin 99.7 8.4E-18 1.8E-22 152.6 6.1 144 336-495 205-384 (499)
40 KOG0318 WD40 repeat stress pro 99.7 8.4E-17 1.8E-21 153.6 13.0 138 339-494 161-345 (603)
41 KOG0310 Conserved WD40 repeat- 99.7 7.8E-17 1.7E-21 152.6 11.9 141 337-495 122-264 (487)
42 PTZ00421 coronin; Provisional 99.7 1.6E-16 3.4E-21 161.2 14.5 156 325-495 73-241 (493)
43 KOG0265 U5 snRNP-specific prot 99.7 1.2E-16 2.6E-21 142.8 11.2 164 323-495 43-242 (338)
44 KOG0315 G-protein beta subunit 99.7 1.7E-16 3.8E-21 138.2 11.6 150 335-495 92-284 (311)
45 KOG1645 RING-finger-containing 99.7 1.2E-16 2.6E-21 148.1 11.2 94 374-475 191-288 (463)
46 PTZ00420 coronin; Provisional 99.7 3E-16 6.5E-21 160.0 15.3 157 324-495 71-244 (568)
47 KOG0269 WD40 repeat-containing 99.7 4E-17 8.7E-22 162.3 7.6 144 339-495 101-246 (839)
48 KOG0295 WD40 repeat-containing 99.7 1.3E-16 2.9E-21 145.8 10.0 143 336-495 245-402 (406)
49 KOG0278 Serine/threonine kinas 99.7 4.2E-16 9.2E-21 135.8 11.7 152 335-495 109-293 (334)
50 KOG0281 Beta-TrCP (transducin 99.7 1.1E-17 2.3E-22 151.9 1.5 108 373-495 317-424 (499)
51 KOG0282 mRNA splicing factor [ 99.7 3E-16 6.5E-21 148.5 10.9 182 313-495 244-501 (503)
52 KOG0292 Vesicle coat complex C 99.7 1.2E-16 2.6E-21 160.8 8.4 138 341-495 24-161 (1202)
53 KOG1407 WD40 repeat protein [F 99.7 1.6E-16 3.4E-21 139.3 7.9 155 333-495 27-257 (313)
54 KOG0292 Vesicle coat complex C 99.7 3E-16 6.4E-21 158.0 10.8 146 333-495 58-232 (1202)
55 KOG0273 Beta-transducin family 99.7 5E-16 1.1E-20 146.5 11.3 153 325-495 357-519 (524)
56 KOG0283 WD40 repeat-containing 99.7 3.4E-16 7.4E-21 157.7 10.7 119 374-495 265-436 (712)
57 KOG0640 mRNA cleavage stimulat 99.7 1.8E-16 3.8E-21 142.1 7.5 155 334-495 120-287 (430)
58 KOG0264 Nucleosome remodeling 99.6 7.5E-16 1.6E-20 145.0 11.3 160 324-495 224-400 (422)
59 KOG0288 WD40 repeat protein Ti 99.6 5.4E-15 1.2E-19 137.5 16.7 85 318-408 166-251 (459)
60 KOG0316 Conserved WD40 repeat- 99.6 1.8E-15 4E-20 130.8 12.0 154 322-495 54-209 (307)
61 KOG0303 Actin-binding protein 99.6 3.8E-16 8.3E-21 144.2 8.4 122 372-495 77-199 (472)
62 KOG0265 U5 snRNP-specific prot 99.6 1.8E-15 3.9E-20 135.3 11.9 115 374-495 45-159 (338)
63 KOG0308 Conserved WD40 repeat- 99.6 5E-16 1.1E-20 151.8 8.9 151 337-495 84-239 (735)
64 KOG0283 WD40 repeat-containing 99.6 1.4E-15 3.1E-20 153.2 12.5 154 324-495 366-528 (712)
65 KOG0275 Conserved WD40 repeat- 99.6 2.2E-16 4.7E-21 142.2 5.7 119 374-495 211-332 (508)
66 KOG0291 WD40-repeat-containing 99.6 1.7E-15 3.7E-20 150.4 12.4 151 336-495 402-608 (893)
67 KOG0772 Uncharacterized conser 99.6 4.2E-16 9.2E-21 148.4 7.8 119 374-495 266-390 (641)
68 KOG0285 Pleiotropic regulator 99.6 1.2E-15 2.6E-20 139.3 10.2 113 374-495 149-261 (460)
69 KOG0270 WD40 repeat-containing 99.6 1.8E-15 4E-20 141.8 10.9 143 338-495 256-400 (463)
70 PLN00181 protein SPA1-RELATED; 99.6 4.3E-15 9.3E-20 162.0 15.3 140 338-495 545-686 (793)
71 KOG0267 Microtubule severing p 99.6 3.4E-16 7.3E-21 154.7 5.7 140 339-495 41-180 (825)
72 KOG0640 mRNA cleavage stimulat 99.6 7.3E-16 1.6E-20 138.2 7.2 151 333-495 179-331 (430)
73 KOG0316 Conserved WD40 repeat- 99.6 4.5E-15 9.9E-20 128.4 11.2 113 374-495 15-127 (307)
74 KOG0306 WD40-repeat-containing 99.6 3.9E-15 8.5E-20 147.8 12.2 155 331-494 459-617 (888)
75 smart00504 Ubox Modified RING 99.6 3.5E-16 7.6E-21 112.8 3.6 62 52-113 1-62 (63)
76 KOG0973 Histone transcription 99.6 3E-15 6.4E-20 154.8 10.9 159 335-495 22-197 (942)
77 KOG0274 Cdc4 and related F-box 99.6 7.8E-15 1.7E-19 149.2 13.1 135 338-495 261-396 (537)
78 KOG0296 Angio-associated migra 99.6 1.2E-14 2.7E-19 133.2 12.2 142 337-495 75-216 (399)
79 KOG0305 Anaphase promoting com 99.6 1.3E-14 2.8E-19 142.7 13.2 146 333-495 308-457 (484)
80 KOG0306 WD40-repeat-containing 99.6 5.5E-15 1.2E-19 146.7 10.2 143 336-495 518-660 (888)
81 KOG0647 mRNA export protein (c 99.6 1.6E-14 3.4E-19 129.5 11.8 113 375-495 26-141 (347)
82 KOG0643 Translation initiation 99.6 8E-15 1.7E-19 129.1 9.3 112 375-495 146-313 (327)
83 PF04564 U-box: U-box domain; 99.6 2.1E-15 4.5E-20 111.1 4.4 67 50-116 2-69 (73)
84 KOG4283 Transcription-coupled 99.6 1.1E-14 2.4E-19 129.9 9.7 152 336-495 54-215 (397)
85 KOG0643 Translation initiation 99.6 2.7E-14 5.9E-19 125.8 11.7 153 333-495 17-216 (327)
86 KOG0308 Conserved WD40 repeat- 99.6 1.8E-14 3.9E-19 141.0 11.2 149 336-494 128-280 (735)
87 PF15227 zf-C3HC4_4: zinc fing 99.6 1.4E-15 2.9E-20 98.1 2.1 38 55-92 1-42 (42)
88 KOG0267 Microtubule severing p 99.6 2.3E-15 5E-20 148.9 4.6 143 336-495 80-222 (825)
89 KOG1332 Vesicle coat complex C 99.6 2.1E-14 4.5E-19 125.0 9.9 148 338-495 23-189 (299)
90 KOG0288 WD40 repeat protein Ti 99.6 1.8E-12 4E-17 120.8 23.4 152 339-495 274-457 (459)
91 KOG1007 WD repeat protein TSSC 99.5 2.2E-14 4.9E-19 127.6 8.8 145 342-495 138-285 (370)
92 KOG0294 WD40 repeat-containing 99.5 7E-14 1.5E-18 126.0 11.9 146 340-495 99-277 (362)
93 KOG0301 Phospholipase A2-activ 99.5 2.4E-14 5.3E-19 141.1 9.4 146 326-495 100-245 (745)
94 cd00200 WD40 WD40 domain, foun 99.5 1.1E-13 2.5E-18 130.8 13.6 140 338-495 147-287 (289)
95 KOG0269 WD40 repeat-containing 99.5 1.7E-14 3.7E-19 143.8 7.9 107 337-458 145-252 (839)
96 KOG0289 mRNA splicing factor [ 99.5 2.4E-12 5.1E-17 120.8 21.5 140 339-495 232-373 (506)
97 KOG0647 mRNA export protein (c 99.5 6.3E-14 1.4E-18 125.6 9.8 136 340-494 42-179 (347)
98 KOG0641 WD40 repeat protein [G 99.5 2E-13 4.4E-18 117.4 12.2 111 374-495 181-299 (350)
99 KOG0274 Cdc4 and related F-box 99.5 1.5E-13 3.2E-18 140.0 13.3 138 338-495 218-355 (537)
100 KOG0318 WD40 repeat stress pro 99.5 2.1E-13 4.6E-18 130.6 13.0 116 371-495 142-261 (603)
101 TIGR00599 rad18 DNA repair pro 99.5 2.2E-14 4.8E-19 138.0 5.8 73 44-116 18-90 (397)
102 KOG1445 Tumor-specific antigen 99.5 4.5E-14 9.7E-19 137.7 7.4 118 375-495 626-746 (1012)
103 KOG1273 WD40 repeat protein [G 99.5 1.5E-13 3.4E-18 123.7 10.3 144 334-495 31-222 (405)
104 cd00200 WD40 WD40 domain, foun 99.5 6E-13 1.3E-17 125.9 14.8 143 336-495 19-161 (289)
105 KOG1332 Vesicle coat complex C 99.5 1.3E-13 2.8E-18 120.1 8.7 117 374-495 9-130 (299)
106 KOG0310 Conserved WD40 repeat- 99.5 1.4E-13 3E-18 130.9 9.3 112 376-495 68-180 (487)
107 KOG0294 WD40 repeat-containing 99.5 4.2E-13 9.1E-18 121.1 11.7 112 374-495 41-153 (362)
108 KOG0301 Phospholipase A2-activ 99.5 3.6E-13 7.8E-18 133.0 11.9 148 324-495 137-284 (745)
109 KOG0287 Postreplication repair 99.5 1.2E-14 2.6E-19 131.3 1.5 73 44-116 15-87 (442)
110 KOG0268 Sof1-like rRNA process 99.5 1.1E-13 2.3E-18 126.9 7.2 136 340-495 161-298 (433)
111 KOG0293 WD40 repeat-containing 99.5 3.8E-13 8.2E-18 125.3 10.7 115 374-494 222-337 (519)
112 KOG1007 WD repeat protein TSSC 99.5 2.8E-13 6.1E-18 120.7 9.4 136 346-495 191-357 (370)
113 KOG0772 Uncharacterized conser 99.4 1.2E-13 2.7E-18 131.8 7.2 142 338-489 281-429 (641)
114 PLN03208 E3 ubiquitin-protein 99.4 2.9E-14 6.2E-19 121.9 2.4 59 48-106 14-88 (193)
115 KOG4283 Transcription-coupled 99.4 3.8E-13 8.3E-18 120.2 9.5 142 337-495 113-272 (397)
116 KOG0302 Ribosome Assembly prot 99.4 4.8E-13 1.1E-17 123.3 10.3 143 339-492 271-432 (440)
117 PF14835 zf-RING_6: zf-RING of 99.4 4.7E-14 1E-18 96.1 1.6 62 48-111 3-65 (65)
118 KOG0270 WD40 repeat-containing 99.4 4.9E-13 1.1E-17 125.7 8.7 148 339-494 193-355 (463)
119 KOG1009 Chromatin assembly com 99.4 3.1E-13 6.6E-18 125.8 6.8 151 340-492 28-188 (434)
120 KOG0639 Transducin-like enhanc 99.4 5.2E-13 1.1E-17 127.2 8.4 136 346-494 438-576 (705)
121 KOG0646 WD40 repeat protein [G 99.4 1.9E-12 4.1E-17 122.6 11.8 146 335-495 132-303 (476)
122 KOG0305 Anaphase promoting com 99.4 5.4E-13 1.2E-17 131.3 8.6 147 332-495 223-372 (484)
123 KOG0973 Histone transcription 99.4 8.8E-13 1.9E-17 136.7 10.0 150 325-488 67-238 (942)
124 KOG0300 WD40 repeat-containing 99.4 1.3E-12 2.8E-17 117.8 9.5 167 318-495 181-382 (481)
125 KOG0296 Angio-associated migra 99.4 4.9E-12 1.1E-16 116.3 13.4 112 374-494 62-173 (399)
126 KOG0303 Actin-binding protein 99.4 1.2E-12 2.7E-17 121.3 9.5 137 337-489 93-235 (472)
127 KOG0278 Serine/threonine kinas 99.4 4.2E-13 9E-18 117.3 6.0 138 337-494 70-208 (334)
128 KOG0300 WD40 repeat-containing 99.4 4.9E-12 1.1E-16 114.1 12.9 147 339-495 161-340 (481)
129 KOG1274 WD40 repeat protein [G 99.4 2.6E-12 5.7E-17 130.8 12.2 150 335-495 105-258 (933)
130 KOG0642 Cell-cycle nuclear pro 99.4 4.3E-12 9.2E-17 122.9 13.1 114 336-455 304-425 (577)
131 KOG0290 Conserved WD40 repeat- 99.4 1.5E-12 3.2E-17 116.3 9.2 148 337-494 162-313 (364)
132 PF13923 zf-C3HC4_2: Zinc fing 99.4 1.6E-13 3.5E-18 87.7 1.7 38 55-92 1-39 (39)
133 KOG1407 WD40 repeat protein [F 99.4 4.8E-12 1E-16 111.5 10.7 120 356-490 174-293 (313)
134 KOG4328 WD40 protein [Function 99.4 1.4E-12 2.9E-17 123.2 7.5 150 340-495 202-395 (498)
135 KOG2096 WD40 repeat protein [G 99.4 6.7E-12 1.5E-16 113.5 11.4 121 372-495 82-304 (420)
136 KOG0320 Predicted E3 ubiquitin 99.4 2.3E-13 4.9E-18 112.6 1.8 55 51-105 130-186 (187)
137 KOG0639 Transducin-like enhanc 99.3 7.1E-13 1.5E-17 126.2 5.0 145 333-494 472-617 (705)
138 KOG0641 WD40 repeat protein [G 99.3 1.3E-11 2.8E-16 106.4 11.7 147 335-495 191-345 (350)
139 KOG0268 Sof1-like rRNA process 99.3 2.5E-12 5.3E-17 118.1 6.8 139 338-495 200-341 (433)
140 KOG1446 Histone H3 (Lys4) meth 99.3 2.2E-11 4.7E-16 110.4 12.3 160 321-495 94-258 (311)
141 KOG0299 U3 snoRNP-associated p 99.3 4.8E-12 1E-16 119.7 7.9 141 336-495 212-352 (479)
142 KOG0823 Predicted E3 ubiquitin 99.3 1.2E-12 2.5E-17 113.9 3.2 57 50-106 45-104 (230)
143 KOG0642 Cell-cycle nuclear pro 99.3 8.4E-12 1.8E-16 120.9 9.2 130 363-495 282-422 (577)
144 KOG0299 U3 snoRNP-associated p 99.3 2.2E-11 4.7E-16 115.3 11.0 120 374-495 140-270 (479)
145 KOG1408 WD40 repeat protein [F 99.3 1.2E-11 2.7E-16 122.5 9.7 114 376-495 596-709 (1080)
146 KOG1446 Histone H3 (Lys4) meth 99.3 6.6E-11 1.4E-15 107.3 13.2 110 374-494 98-212 (311)
147 KOG1034 Transcriptional repres 99.3 2.6E-11 5.7E-16 110.2 10.4 113 375-495 88-207 (385)
148 KOG2445 Nuclear pore complex c 99.3 6E-11 1.3E-15 107.0 12.3 119 374-495 11-140 (361)
149 KOG1188 WD40 repeat protein [G 99.3 2.3E-11 4.9E-16 111.2 9.1 140 341-495 43-192 (376)
150 KOG2394 WD40 protein DMR-N9 [G 99.3 1.6E-11 3.5E-16 118.2 8.6 95 376-478 290-384 (636)
151 PF13920 zf-C3HC4_3: Zinc fing 99.2 2.2E-12 4.9E-17 87.5 1.8 47 51-97 1-48 (50)
152 KOG1036 Mitotic spindle checkp 99.2 6.8E-11 1.5E-15 106.7 11.5 108 376-495 13-120 (323)
153 KOG1445 Tumor-specific antigen 99.2 1E-11 2.2E-16 121.6 6.7 145 337-491 639-786 (1012)
154 KOG0322 G-protein beta subunit 99.2 1.3E-11 2.9E-16 108.9 6.4 147 341-495 168-319 (323)
155 PF13639 zf-RING_2: Ring finge 99.2 1.9E-12 4E-17 85.4 0.6 40 54-93 2-44 (44)
156 KOG1063 RNA polymerase II elon 99.2 5.2E-11 1.1E-15 118.0 10.3 116 371-495 520-644 (764)
157 COG5432 RAD18 RING-finger-cont 99.2 4.3E-12 9.3E-17 112.6 2.4 70 46-115 19-88 (391)
158 KOG1310 WD40 repeat protein [G 99.2 4.4E-11 9.4E-16 115.5 8.9 167 322-495 45-227 (758)
159 KOG1310 WD40 repeat protein [G 99.2 5.2E-11 1.1E-15 114.9 9.3 118 371-494 45-173 (758)
160 KOG4378 Nuclear protein COP1 [ 99.2 5.9E-11 1.3E-15 113.2 9.0 139 341-495 94-235 (673)
161 KOG0317 Predicted E3 ubiquitin 99.2 7.4E-12 1.6E-16 112.2 2.5 51 51-101 238-288 (293)
162 KOG0307 Vesicle coat complex C 99.2 1.9E-11 4.2E-16 127.5 5.8 142 341-492 83-230 (1049)
163 KOG2096 WD40 repeat protein [G 99.2 1.2E-10 2.7E-15 105.4 10.0 138 349-495 251-398 (420)
164 KOG1273 WD40 repeat protein [G 99.2 1.5E-10 3.4E-15 104.6 10.4 97 379-484 26-122 (405)
165 PF13445 zf-RING_UBOX: RING-ty 99.2 6.9E-12 1.5E-16 80.5 1.2 35 55-90 1-43 (43)
166 KOG0646 WD40 repeat protein [G 99.2 1.3E-10 2.8E-15 110.3 10.2 120 374-495 121-243 (476)
167 KOG2445 Nuclear pore complex c 99.2 4.3E-10 9.2E-15 101.6 12.9 154 336-495 23-252 (361)
168 KOG0644 Uncharacterized conser 99.2 1.6E-11 3.6E-16 123.7 4.1 111 372-495 186-296 (1113)
169 KOG1036 Mitotic spindle checkp 99.2 2.8E-10 6E-15 102.9 11.4 142 333-495 60-203 (323)
170 PF00097 zf-C3HC4: Zinc finger 99.2 1.1E-11 2.5E-16 80.4 1.8 38 55-92 1-41 (41)
171 PHA02929 N1R/p28-like protein; 99.1 1.9E-11 4E-16 109.8 3.2 48 50-97 172-227 (238)
172 PF08662 eIF2A: Eukaryotic tra 99.1 9.5E-10 2.1E-14 98.4 14.2 101 376-490 59-164 (194)
173 KOG2048 WD40 repeat protein [G 99.1 2.9E-10 6.3E-15 112.6 11.6 117 374-494 152-270 (691)
174 KOG2177 Predicted E3 ubiquitin 99.1 3.1E-10 6.8E-15 111.9 11.9 72 44-117 5-76 (386)
175 KOG0321 WD40 repeat-containing 99.1 1.1E-10 2.4E-15 114.7 7.7 147 340-495 66-244 (720)
176 KOG1539 WD repeat protein [Gen 99.1 1.8E-10 3.9E-15 116.4 9.1 114 372-495 489-602 (910)
177 KOG0771 Prolactin regulatory e 99.1 1.7E-10 3.6E-15 108.5 8.2 149 335-494 153-349 (398)
178 KOG0307 Vesicle coat complex C 99.1 1.1E-10 2.4E-15 122.0 7.6 143 340-495 176-323 (1049)
179 KOG1539 WD repeat protein [Gen 99.1 1.4E-10 3.1E-15 117.1 8.1 133 339-491 506-639 (910)
180 KOG2106 Uncharacterized conser 99.1 5.8E-10 1.3E-14 106.9 11.7 108 374-495 366-473 (626)
181 KOG4378 Nuclear protein COP1 [ 99.1 1.7E-10 3.7E-15 110.2 7.8 126 339-481 178-305 (673)
182 KOG1274 WD40 repeat protein [G 99.1 7.8E-10 1.7E-14 113.1 12.3 142 337-495 65-214 (933)
183 KOG1408 WD40 repeat protein [F 99.1 2.3E-10 5E-15 113.7 7.8 149 341-495 339-530 (1080)
184 KOG1009 Chromatin assembly com 99.1 5.6E-10 1.2E-14 104.3 9.2 118 376-495 13-149 (434)
185 KOG2110 Uncharacterized conser 99.1 1.5E-09 3.3E-14 100.4 11.7 131 350-495 108-244 (391)
186 KOG1063 RNA polymerase II elon 99.1 7.8E-10 1.7E-14 109.8 10.2 120 372-495 568-695 (764)
187 TIGR00570 cdk7 CDK-activating 99.0 1.2E-08 2.7E-13 94.3 17.1 51 52-102 3-59 (309)
188 KOG4328 WD40 protein [Function 99.0 1.3E-09 2.8E-14 103.4 10.1 119 374-495 184-349 (498)
189 KOG0974 WD-repeat protein WDR6 99.0 1.5E-09 3.1E-14 112.7 11.3 135 342-495 149-284 (967)
190 PF14634 zf-RING_5: zinc-RING 99.0 1.3E-10 2.8E-15 76.2 2.3 41 54-94 1-44 (44)
191 KOG2048 WD40 repeat protein [G 99.0 3.6E-09 7.9E-14 104.9 12.7 148 332-495 74-229 (691)
192 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 3.8E-09 8.2E-14 101.5 12.5 131 341-491 4-136 (300)
193 KOG2919 Guanine nucleotide-bin 99.0 2.1E-09 4.6E-14 97.7 9.5 135 340-491 222-362 (406)
194 KOG1034 Transcriptional repres 99.0 6E-10 1.3E-14 101.5 5.8 111 371-493 130-273 (385)
195 KOG0649 WD40 repeat protein [G 99.0 4.7E-09 1E-13 91.9 11.1 117 374-495 60-182 (325)
196 KOG4367 Predicted Zn-finger pr 99.0 2.6E-09 5.5E-14 100.4 10.0 34 49-82 1-34 (699)
197 KOG1523 Actin-related protein 99.0 1.9E-09 4.1E-14 98.0 8.9 147 338-495 22-172 (361)
198 cd00162 RING RING-finger (Real 99.0 2.6E-10 5.5E-15 75.9 2.5 43 54-96 1-45 (45)
199 KOG2164 Predicted E3 ubiquitin 99.0 1.5E-10 3.3E-15 112.0 1.1 58 52-109 186-248 (513)
200 KOG2919 Guanine nucleotide-bin 99.0 2.8E-09 6.1E-14 96.9 9.2 149 336-495 168-323 (406)
201 KOG4227 WD40 repeat protein [G 99.0 3.1E-09 6.7E-14 98.8 9.4 122 370-495 50-175 (609)
202 KOG1524 WD40 repeat-containing 99.0 1.5E-09 3.2E-14 104.8 7.5 135 334-489 112-246 (737)
203 KOG3881 Uncharacterized conser 98.9 7.8E-09 1.7E-13 96.5 11.3 145 339-495 162-316 (412)
204 PHA02926 zinc finger-like prot 98.9 3.5E-10 7.6E-15 97.6 2.3 50 48-97 166-230 (242)
205 KOG1523 Actin-related protein 98.9 6.6E-09 1.4E-13 94.5 10.1 152 334-495 63-232 (361)
206 KOG2106 Uncharacterized conser 98.9 1.4E-08 3.1E-13 97.5 12.9 137 335-493 377-515 (626)
207 KOG2111 Uncharacterized conser 98.9 1.5E-08 3.2E-13 92.3 12.2 102 387-495 147-252 (346)
208 KOG0321 WD40 repeat-containing 98.9 6.8E-09 1.5E-13 102.3 10.1 157 332-495 223-387 (720)
209 smart00184 RING Ring finger. E 98.9 8.1E-10 1.7E-14 70.8 1.9 38 55-92 1-39 (39)
210 KOG2394 WD40 protein DMR-N9 [G 98.9 1.2E-08 2.7E-13 98.7 10.6 118 376-495 219-358 (636)
211 KOG0978 E3 ubiquitin ligase in 98.8 5.4E-10 1.2E-14 113.7 0.0 59 47-105 638-697 (698)
212 KOG0771 Prolactin regulatory e 98.8 1.8E-08 3.9E-13 95.0 9.9 106 380-495 148-307 (398)
213 KOG1188 WD40 repeat protein [G 98.8 1.6E-08 3.5E-13 92.8 9.3 142 338-494 84-237 (376)
214 COG2319 FOG: WD40 repeat [Gene 98.8 7E-08 1.5E-12 96.3 14.7 135 344-495 130-267 (466)
215 PF12678 zf-rbx1: RING-H2 zinc 98.8 2.4E-09 5.3E-14 78.5 2.9 40 54-93 21-73 (73)
216 KOG4227 WD40 repeat protein [G 98.8 3.1E-08 6.8E-13 92.3 10.5 143 337-492 67-218 (609)
217 KOG2055 WD40 repeat protein [G 98.8 4.9E-08 1.1E-12 93.0 11.9 157 331-495 218-413 (514)
218 KOG0290 Conserved WD40 repeat- 98.8 1.4E-08 3.1E-13 91.2 7.7 146 341-492 116-266 (364)
219 KOG1587 Cytoplasmic dynein int 98.8 3E-08 6.5E-13 100.9 10.6 154 337-495 254-468 (555)
220 KOG0644 Uncharacterized conser 98.8 1.2E-09 2.7E-14 110.4 0.6 97 339-456 203-300 (1113)
221 KOG0650 WD40 repeat nucleolar 98.8 1.2E-07 2.7E-12 93.0 14.1 109 374-491 398-543 (733)
222 KOG1538 Uncharacterized conser 98.8 9.4E-08 2E-12 94.9 13.3 150 335-494 62-288 (1081)
223 KOG0649 WD40 repeat protein [G 98.8 7.1E-08 1.5E-12 84.7 10.5 103 376-489 114-226 (325)
224 COG5574 PEX10 RING-finger-cont 98.8 2.3E-09 4.9E-14 95.1 1.3 50 51-100 214-265 (271)
225 KOG2055 WD40 repeat protein [G 98.7 1E-07 2.2E-12 90.9 11.6 110 376-495 344-508 (514)
226 KOG2110 Uncharacterized conser 98.7 1.1E-07 2.3E-12 88.5 10.3 92 348-456 153-248 (391)
227 COG2319 FOG: WD40 repeat [Gene 98.7 2.8E-07 6E-12 92.0 14.2 137 340-494 169-309 (466)
228 KOG1538 Uncharacterized conser 98.7 1.6E-08 3.4E-13 100.2 4.9 125 349-495 34-158 (1081)
229 TIGR03866 PQQ_ABC_repeats PQQ- 98.7 2.3E-07 5E-12 89.1 12.8 134 342-495 47-183 (300)
230 KOG1517 Guanine nucleotide bin 98.7 6.4E-08 1.4E-12 100.7 8.7 147 338-495 1221-1377(1387)
231 KOG0650 WD40 repeat nucleolar 98.7 7.1E-08 1.5E-12 94.7 8.3 112 375-495 606-731 (733)
232 KOG1524 WD40 repeat-containing 98.7 6.9E-08 1.5E-12 93.6 8.0 111 374-495 102-212 (737)
233 KOG2660 Locus-specific chromos 98.6 1.4E-08 3E-13 93.2 2.7 71 44-114 7-82 (331)
234 KOG2139 WD40 repeat protein [G 98.6 4.4E-07 9.6E-12 84.2 12.1 145 340-495 112-264 (445)
235 KOG0311 Predicted E3 ubiquitin 98.6 5.1E-09 1.1E-13 96.4 -0.5 71 44-114 35-108 (381)
236 KOG1517 Guanine nucleotide bin 98.6 2.1E-07 4.5E-12 97.1 10.9 139 343-495 1182-1329(1387)
237 KOG0322 G-protein beta subunit 98.6 6.1E-08 1.3E-12 86.1 6.0 71 376-455 251-322 (323)
238 KOG1587 Cytoplasmic dynein int 98.6 1.5E-07 3.2E-12 95.8 9.6 114 374-495 396-512 (555)
239 PF11789 zf-Nse: Zinc-finger o 98.6 1.4E-08 3.1E-13 69.9 1.4 42 50-91 9-53 (57)
240 KOG2111 Uncharacterized conser 98.6 1.3E-06 2.8E-11 79.9 13.3 75 374-457 179-257 (346)
241 KOG0280 Uncharacterized conser 98.6 1.4E-07 2.9E-12 85.2 6.4 140 339-493 179-326 (339)
242 KOG1354 Serine/threonine prote 98.5 9.9E-08 2.1E-12 87.8 5.5 154 336-495 174-355 (433)
243 PF08662 eIF2A: Eukaryotic tra 98.5 5.6E-07 1.2E-11 80.5 10.1 101 342-464 77-186 (194)
244 KOG2139 WD40 repeat protein [G 98.5 1.4E-06 3.1E-11 80.9 12.2 104 377-490 196-302 (445)
245 COG5243 HRD1 HRD ubiquitin lig 98.5 4.2E-08 9E-13 90.7 2.0 49 50-98 285-346 (491)
246 PRK01742 tolB translocation pr 98.5 5.5E-07 1.2E-11 91.4 10.4 127 347-493 183-316 (429)
247 KOG4547 WD40 repeat-containing 98.5 8.9E-07 1.9E-11 87.2 11.1 127 344-487 76-207 (541)
248 KOG0280 Uncharacterized conser 98.5 1.3E-06 2.8E-11 79.0 11.2 112 379-495 124-237 (339)
249 KOG4628 Predicted E3 ubiquitin 98.5 4.6E-08 1E-12 92.1 1.8 46 53-98 230-279 (348)
250 PF00400 WD40: WD domain, G-be 98.5 6.8E-07 1.5E-11 57.0 6.7 31 374-404 9-39 (39)
251 KOG1272 WD40-repeat-containing 98.5 2.1E-07 4.5E-12 88.9 5.4 110 376-495 209-319 (545)
252 KOG1963 WD40 repeat protein [G 98.5 1.6E-06 3.5E-11 89.1 12.1 116 374-495 203-318 (792)
253 KOG1334 WD40 repeat protein [G 98.4 8.9E-07 1.9E-11 85.2 8.7 166 319-495 134-308 (559)
254 KOG1272 WD40-repeat-containing 98.4 5.6E-07 1.2E-11 86.0 6.9 94 375-478 250-344 (545)
255 KOG0804 Cytoplasmic Zn-finger 98.4 1.8E-05 3.9E-10 75.7 15.6 48 48-97 171-222 (493)
256 KOG2879 Predicted E3 ubiquitin 98.3 2E-07 4.4E-12 83.1 2.4 48 50-97 237-287 (298)
257 KOG0974 WD-repeat protein WDR6 98.3 3.4E-06 7.4E-11 88.3 11.6 102 383-495 140-242 (967)
258 KOG0309 Conserved WD40 repeat- 98.3 9.1E-07 2E-11 89.1 6.5 134 349-495 92-228 (1081)
259 KOG3914 WD repeat protein WDR4 98.3 1.4E-06 3E-11 82.1 7.1 85 372-464 147-231 (390)
260 COG5222 Uncharacterized conser 98.3 5.6E-07 1.2E-11 80.8 4.3 62 53-114 275-339 (427)
261 KOG2321 WD40 repeat protein [G 98.3 2.8E-06 6.1E-11 83.4 9.3 142 338-493 187-337 (703)
262 COG5152 Uncharacterized conser 98.3 2.5E-07 5.5E-12 77.9 1.7 46 52-97 196-241 (259)
263 KOG4159 Predicted E3 ubiquitin 98.3 2.8E-07 6.1E-12 89.4 2.1 52 47-98 79-130 (398)
264 PF12861 zf-Apc11: Anaphase-pr 98.3 4.1E-07 8.9E-12 66.9 2.3 48 51-98 20-83 (85)
265 PRK11028 6-phosphogluconolacto 98.3 1.1E-05 2.3E-10 79.1 13.1 136 346-494 55-200 (330)
266 KOG0824 Predicted E3 ubiquitin 98.3 2.8E-07 6E-12 83.4 1.6 46 53-98 8-54 (324)
267 COG5540 RING-finger-containing 98.3 3.8E-07 8.1E-12 82.3 2.2 47 51-97 322-372 (374)
268 PRK11028 6-phosphogluconolacto 98.3 1.2E-05 2.5E-10 78.8 12.7 138 344-495 8-152 (330)
269 KOG2695 WD40 repeat protein [G 98.2 1.7E-06 3.7E-11 79.9 5.6 118 374-495 250-372 (425)
270 PF00400 WD40: WD domain, G-be 98.2 1.7E-06 3.7E-11 55.2 4.1 37 458-495 1-37 (39)
271 PRK01742 tolB translocation pr 98.2 4.9E-06 1.1E-10 84.5 9.4 107 374-494 289-396 (429)
272 PRK05137 tolB translocation pr 98.2 1.6E-05 3.4E-10 81.0 12.8 105 374-489 199-309 (435)
273 KOG4714 Nucleoporin [Nuclear s 98.2 2.9E-06 6.4E-11 75.5 5.3 68 426-493 180-248 (319)
274 KOG1240 Protein kinase contain 98.1 1E-05 2.3E-10 86.1 10.1 152 339-494 1062-1220(1431)
275 KOG1334 WD40 repeat protein [G 98.1 4.7E-06 1E-10 80.3 6.9 115 372-494 138-258 (559)
276 PRK02889 tolB translocation pr 98.1 1.8E-05 3.9E-10 80.3 11.4 106 374-489 193-303 (427)
277 KOG4739 Uncharacterized protei 98.1 5.5E-05 1.2E-09 67.3 12.8 50 53-104 4-55 (233)
278 KOG0802 E3 ubiquitin ligase [P 98.1 6.6E-07 1.4E-11 92.8 0.9 46 52-97 291-341 (543)
279 PRK04922 tolB translocation pr 98.1 2.4E-05 5.2E-10 79.6 11.5 105 374-489 201-311 (433)
280 KOG4185 Predicted E3 ubiquitin 98.1 6E-05 1.3E-09 72.4 13.6 62 53-114 4-77 (296)
281 KOG1813 Predicted E3 ubiquitin 98.1 1E-06 2.2E-11 79.7 1.3 45 53-97 242-286 (313)
282 KOG0297 TNF receptor-associate 98.1 2.2E-06 4.8E-11 84.6 3.5 69 47-115 16-86 (391)
283 KOG4714 Nucleoporin [Nuclear s 98.1 8E-06 1.7E-10 72.8 6.2 74 377-457 180-255 (319)
284 PRK03629 tolB translocation pr 98.0 5.8E-05 1.3E-09 76.6 13.0 106 374-490 196-307 (429)
285 KOG0827 Predicted E3 ubiquitin 98.0 4.2E-05 9E-10 71.8 10.6 49 53-101 5-60 (465)
286 PF11768 DUF3312: Protein of u 98.0 5.1E-05 1.1E-09 75.7 11.6 73 374-456 257-329 (545)
287 KOG4190 Uncharacterized conser 98.0 6.3E-06 1.4E-10 80.5 5.1 120 371-495 730-855 (1034)
288 KOG4172 Predicted E3 ubiquitin 98.0 1.2E-06 2.5E-11 57.2 -0.3 45 53-97 8-54 (62)
289 KOG1963 WD40 repeat protein [G 98.0 5.1E-05 1.1E-09 78.4 10.8 144 335-493 214-369 (792)
290 PF02239 Cytochrom_D1: Cytochr 97.9 0.00015 3.3E-09 71.6 13.1 124 345-486 13-145 (369)
291 KOG4497 Uncharacterized conser 97.9 0.00012 2.7E-09 67.4 11.0 129 346-495 69-236 (447)
292 TIGR02800 propeller_TolB tol-p 97.9 0.00011 2.4E-09 74.4 12.2 105 374-489 187-297 (417)
293 COG5170 CDC55 Serine/threonine 97.9 1.1E-05 2.4E-10 73.6 3.9 151 338-492 184-360 (460)
294 KOG3914 WD repeat protein WDR4 97.9 5.7E-05 1.2E-09 71.5 8.2 95 390-495 124-219 (390)
295 KOG2315 Predicted translation 97.8 0.00024 5.2E-09 70.1 12.5 101 376-490 270-375 (566)
296 KOG3039 Uncharacterized conser 97.8 9.5E-06 2.1E-10 71.1 2.6 53 51-103 220-276 (303)
297 KOG2321 WD40 repeat protein [G 97.8 9.8E-05 2.1E-09 72.9 9.6 110 375-486 174-290 (703)
298 KOG3881 Uncharacterized conser 97.8 7.4E-05 1.6E-09 70.4 7.8 124 339-478 217-341 (412)
299 KOG1064 RAVE (regulator of V-A 97.8 3.8E-05 8.3E-10 84.9 6.4 137 337-495 2219-2362(2439)
300 PRK04792 tolB translocation pr 97.8 0.00025 5.5E-09 72.3 12.1 104 375-489 216-325 (448)
301 PRK00178 tolB translocation pr 97.8 0.00031 6.7E-09 71.5 12.7 105 374-489 196-306 (430)
302 KOG1734 Predicted RING-contain 97.7 6.3E-06 1.4E-10 73.3 -0.3 54 51-104 223-288 (328)
303 PF11768 DUF3312: Protein of u 97.7 0.00056 1.2E-08 68.4 12.9 108 379-494 208-324 (545)
304 KOG4190 Uncharacterized conser 97.7 6.5E-05 1.4E-09 73.6 5.8 140 337-494 746-901 (1034)
305 KOG1002 Nucleotide excision re 97.7 1.8E-05 4E-10 76.8 1.7 51 50-100 534-589 (791)
306 PRK03629 tolB translocation pr 97.7 0.00056 1.2E-08 69.4 12.5 103 377-490 243-351 (429)
307 KOG0826 Predicted E3 ubiquitin 97.6 1.5E-05 3.3E-10 73.2 1.0 52 52-103 300-352 (357)
308 KOG1240 Protein kinase contain 97.6 0.00059 1.3E-08 73.3 12.6 83 374-457 1046-1129(1431)
309 KOG1409 Uncharacterized conser 97.6 0.00024 5.3E-09 66.0 8.6 77 374-457 195-271 (404)
310 PRK02889 tolB translocation pr 97.6 0.00044 9.5E-09 70.2 10.8 108 374-491 281-392 (427)
311 PRK05137 tolB translocation pr 97.6 0.00077 1.7E-08 68.7 12.1 105 375-490 244-354 (435)
312 KOG1354 Serine/threonine prote 97.5 0.00017 3.7E-09 67.0 6.0 109 374-489 162-292 (433)
313 PF11793 FANCL_C: FANCL C-term 97.5 1.9E-05 4E-10 57.3 -0.3 47 52-98 2-67 (70)
314 PRK04922 tolB translocation pr 97.5 0.0012 2.5E-08 67.3 12.2 104 376-490 247-356 (433)
315 KOG3800 Predicted E3 ubiquitin 97.4 0.0016 3.5E-08 59.3 11.0 48 54-101 2-55 (300)
316 KOG1039 Predicted E3 ubiquitin 97.4 6E-05 1.3E-09 71.9 2.0 48 50-97 159-221 (344)
317 COG5194 APC11 Component of SCF 97.4 5E-05 1.1E-09 54.2 1.0 45 54-98 22-82 (88)
318 KOG4532 WD40-like repeat conta 97.4 0.0027 5.9E-08 57.3 11.8 95 379-478 161-260 (344)
319 KOG1275 PAB-dependent poly(A) 97.4 0.00047 1E-08 71.8 8.0 136 341-495 190-338 (1118)
320 TIGR02800 propeller_TolB tol-p 97.4 0.002 4.2E-08 65.3 12.6 106 375-491 232-343 (417)
321 KOG4497 Uncharacterized conser 97.4 0.00023 5E-09 65.7 5.0 103 382-494 14-117 (447)
322 KOG2695 WD40 repeat protein [G 97.4 0.00027 5.8E-09 65.8 5.1 100 374-478 296-402 (425)
323 KOG4692 Predicted E3 ubiquitin 97.3 7.6E-05 1.6E-09 69.0 1.4 48 50-97 420-467 (489)
324 smart00744 RINGv The RING-vari 97.3 8.8E-05 1.9E-09 49.5 1.3 40 54-93 1-49 (49)
325 PLN02919 haloacid dehalogenase 97.3 0.0021 4.6E-08 72.1 13.0 116 378-495 741-884 (1057)
326 KOG4547 WD40 repeat-containing 97.3 0.0013 2.8E-08 65.5 9.4 93 390-489 72-164 (541)
327 KOG0825 PHD Zn-finger protein 97.3 5.8E-05 1.3E-09 76.8 0.2 47 52-98 123-172 (1134)
328 PF02239 Cytochrom_D1: Cytochr 97.3 0.0024 5.2E-08 63.2 11.4 96 388-494 5-103 (369)
329 PF04641 Rtf2: Rtf2 RING-finge 97.3 0.00015 3.2E-09 67.9 2.6 53 50-103 111-167 (260)
330 KOG4532 WD40-like repeat conta 97.3 0.0035 7.6E-08 56.6 10.8 110 376-488 203-321 (344)
331 KOG3617 WD40 and TPR repeat-co 97.2 0.00045 9.8E-09 71.3 5.7 103 381-494 20-126 (1416)
332 KOG2066 Vacuolar assembly/sort 97.2 0.0025 5.3E-08 65.9 10.7 96 385-492 80-181 (846)
333 PF14447 Prok-RING_4: Prokaryo 97.2 0.00021 4.6E-09 47.6 2.0 49 50-100 5-53 (55)
334 PF15492 Nbas_N: Neuroblastoma 97.2 0.0098 2.1E-07 54.5 13.0 31 377-407 44-74 (282)
335 KOG1064 RAVE (regulator of V-A 97.2 0.00036 7.9E-09 77.6 4.4 129 338-495 2263-2394(2439)
336 PRK01029 tolB translocation pr 97.2 0.0045 9.8E-08 62.7 12.1 105 377-488 281-389 (428)
337 KOG0309 Conserved WD40 repeat- 97.2 0.00033 7.2E-09 71.2 3.8 118 324-456 111-232 (1081)
338 KOG4265 Predicted E3 ubiquitin 97.2 0.00016 3.4E-09 68.0 1.4 48 51-98 289-337 (349)
339 KOG2041 WD40 repeat protein [G 97.2 0.0039 8.5E-08 63.5 11.2 118 375-494 13-140 (1189)
340 smart00320 WD40 WD40 repeats. 97.1 0.0016 3.5E-08 39.8 5.7 31 374-404 10-40 (40)
341 KOG1493 Anaphase-promoting com 97.1 9.6E-05 2.1E-09 52.2 -0.6 45 54-98 22-82 (84)
342 PRK01029 tolB translocation pr 97.0 0.006 1.3E-07 61.8 11.5 106 377-489 231-346 (428)
343 KOG1571 Predicted E3 ubiquitin 97.0 0.00021 4.5E-09 67.2 0.8 46 49-97 302-347 (355)
344 PRK00178 tolB translocation pr 97.0 0.0076 1.6E-07 61.3 12.2 102 377-489 243-350 (430)
345 KOG1785 Tyrosine kinase negati 97.0 0.00023 4.9E-09 67.1 0.7 45 54-98 371-417 (563)
346 KOG0828 Predicted E3 ubiquitin 96.9 0.00031 6.7E-09 68.1 1.2 48 50-97 569-634 (636)
347 PRK04792 tolB translocation pr 96.9 0.0086 1.9E-07 61.1 11.8 100 379-489 264-369 (448)
348 KOG1645 RING-finger-containing 96.9 0.0037 8E-08 59.6 8.1 72 423-495 191-262 (463)
349 PF14570 zf-RING_4: RING/Ubox 96.9 0.00069 1.5E-08 44.2 2.3 42 55-96 1-47 (48)
350 KOG4640 Anaphase-promoting com 96.9 0.0049 1.1E-07 62.2 9.1 92 377-478 21-115 (665)
351 KOG3161 Predicted E3 ubiquitin 96.8 0.00042 9.1E-09 69.3 1.4 64 48-114 7-79 (861)
352 KOG4275 Predicted E3 ubiquitin 96.8 0.00015 3.2E-09 65.6 -1.7 42 52-97 300-342 (350)
353 COG4946 Uncharacterized protei 96.8 0.034 7.4E-07 54.3 13.8 109 374-492 357-466 (668)
354 KOG1001 Helicase-like transcri 96.8 0.00026 5.7E-09 74.3 -0.8 47 53-100 455-503 (674)
355 KOG1409 Uncharacterized conser 96.8 0.006 1.3E-07 57.0 8.0 113 374-493 22-138 (404)
356 KOG3621 WD40 repeat-containing 96.7 0.0077 1.7E-07 61.5 9.3 111 376-494 33-149 (726)
357 PLN02919 haloacid dehalogenase 96.7 0.017 3.7E-07 65.0 12.9 115 380-495 686-829 (1057)
358 KOG2930 SCF ubiquitin ligase, 96.7 0.00054 1.2E-08 51.6 0.5 44 53-96 47-107 (114)
359 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.091 2E-06 41.5 12.5 101 379-494 2-109 (111)
360 COG5170 CDC55 Serine/threonine 96.5 0.0044 9.5E-08 57.1 5.5 109 374-489 170-300 (460)
361 smart00320 WD40 WD40 repeats. 96.5 0.0047 1E-07 37.6 4.3 36 459-495 3-38 (40)
362 COG4946 Uncharacterized protei 96.5 0.035 7.5E-07 54.3 11.6 105 374-488 399-507 (668)
363 KOG2066 Vacuolar assembly/sort 96.5 0.017 3.7E-07 59.9 9.9 123 337-478 82-215 (846)
364 KOG2314 Translation initiation 96.5 0.012 2.7E-07 58.4 8.6 100 380-491 214-327 (698)
365 KOG0882 Cyclophilin-related pe 96.5 0.006 1.3E-07 59.0 6.0 141 339-493 21-168 (558)
366 PRK04043 tolB translocation pr 96.4 0.057 1.2E-06 54.5 13.3 102 378-489 189-296 (419)
367 PF10282 Lactonase: Lactonase, 96.3 0.049 1.1E-06 53.6 12.1 115 376-493 191-316 (345)
368 KOG1912 WD40 repeat protein [G 96.3 0.03 6.5E-07 58.0 10.4 112 374-493 53-180 (1062)
369 KOG1941 Acetylcholine receptor 96.3 0.001 2.2E-08 62.7 -0.1 43 52-94 365-413 (518)
370 KOG3039 Uncharacterized conser 96.2 0.0024 5.1E-08 56.5 1.6 38 46-83 37-74 (303)
371 COG5220 TFB3 Cdk activating ki 96.1 0.034 7.3E-07 49.1 8.5 47 52-98 10-65 (314)
372 KOG1814 Predicted E3 ubiquitin 96.1 0.0021 4.6E-08 61.3 1.0 45 51-95 183-238 (445)
373 KOG3002 Zn finger protein [Gen 96.1 0.004 8.7E-08 58.7 2.8 63 48-116 44-107 (299)
374 KOG1008 Uncharacterized conser 96.1 0.0022 4.7E-08 64.6 1.0 133 346-491 127-266 (783)
375 KOG2079 Vacuolar assembly/sort 96.0 0.032 6.8E-07 59.9 9.3 99 387-493 98-199 (1206)
376 TIGR02658 TTQ_MADH_Hv methylam 96.0 0.13 2.7E-06 50.2 12.7 99 349-466 28-146 (352)
377 PF05290 Baculo_IE-1: Baculovi 96.0 0.0037 8.1E-08 49.9 1.8 48 51-98 79-133 (140)
378 COG5219 Uncharacterized conser 96.0 0.0028 6.1E-08 66.4 1.2 50 48-97 1465-1523(1525)
379 PF10282 Lactonase: Lactonase, 95.9 0.26 5.6E-06 48.5 14.9 115 377-493 87-216 (345)
380 PF08450 SGL: SMP-30/Gluconola 95.8 0.17 3.7E-06 47.0 12.7 107 377-486 134-242 (246)
381 COG2706 3-carboxymuconate cycl 95.7 0.15 3.2E-06 48.4 11.4 114 376-491 190-312 (346)
382 PF04762 IKI3: IKI3 family; I 95.7 0.07 1.5E-06 59.1 10.9 111 376-489 120-276 (928)
383 KOG2315 Predicted translation 95.7 0.15 3.3E-06 50.9 11.7 98 381-491 222-333 (566)
384 COG5175 MOT2 Transcriptional r 95.6 0.0054 1.2E-07 56.8 1.4 50 51-100 13-67 (480)
385 KOG4362 Transcriptional regula 95.5 0.0054 1.2E-07 63.3 1.0 66 47-112 16-84 (684)
386 KOG2041 WD40 repeat protein [G 95.4 0.027 5.8E-07 57.7 5.7 79 372-456 67-145 (1189)
387 COG2706 3-carboxymuconate cycl 95.4 0.34 7.3E-06 46.1 12.5 104 379-488 147-262 (346)
388 KOG2817 Predicted E3 ubiquitin 95.4 0.0076 1.6E-07 57.6 1.7 50 49-98 331-386 (394)
389 KOG4640 Anaphase-promoting com 95.3 0.046 9.9E-07 55.4 6.7 69 424-495 19-88 (665)
390 COG5354 Uncharacterized protei 95.3 0.15 3.3E-06 50.4 10.0 100 375-488 273-378 (561)
391 KOG3621 WD40 repeat-containing 95.2 0.041 9E-07 56.4 6.4 110 375-488 75-188 (726)
392 TIGR02658 TTQ_MADH_Hv methylam 95.0 0.23 5E-06 48.4 10.7 79 378-465 249-339 (352)
393 PF12894 Apc4_WD40: Anaphase-p 95.0 0.1 2.2E-06 34.4 5.6 35 424-460 10-44 (47)
394 PF08450 SGL: SMP-30/Gluconola 94.9 0.4 8.7E-06 44.5 11.9 108 376-494 85-208 (246)
395 PF07800 DUF1644: Protein of u 94.9 0.016 3.4E-07 48.1 2.0 34 51-84 1-47 (162)
396 COG5236 Uncharacterized conser 94.9 0.017 3.7E-07 53.8 2.4 49 48-96 57-107 (493)
397 COG5354 Uncharacterized protei 94.9 0.052 1.1E-06 53.6 5.8 97 376-484 32-146 (561)
398 PF10367 Vps39_2: Vacuolar sor 94.8 0.0095 2.1E-07 47.6 0.6 34 48-81 74-109 (109)
399 PF14783 BBS2_Mid: Ciliary BBS 94.8 0.18 3.9E-06 39.8 7.5 91 339-451 16-109 (111)
400 PRK04043 tolB translocation pr 94.8 0.46 1E-05 48.0 12.6 102 376-489 232-338 (419)
401 KOG2114 Vacuolar assembly/sort 94.7 0.012 2.7E-07 61.4 1.1 39 53-94 841-880 (933)
402 KOG2314 Translation initiation 94.6 0.24 5.2E-06 49.6 9.6 111 376-494 445-562 (698)
403 smart00502 BBC B-Box C-termina 94.6 1.2 2.7E-05 36.2 12.8 60 161-220 42-102 (127)
404 KOG4642 Chaperone-dependent E3 94.6 0.026 5.7E-07 50.5 2.7 69 48-116 207-276 (284)
405 PF02891 zf-MIZ: MIZ/SP-RING z 94.5 0.02 4.4E-07 38.3 1.4 43 52-95 2-50 (50)
406 KOG1008 Uncharacterized conser 94.4 0.0089 1.9E-07 60.4 -0.7 115 374-494 100-220 (783)
407 PF08553 VID27: VID27 cytoplas 94.4 0.32 6.9E-06 52.3 10.6 97 389-491 543-640 (794)
408 TIGR03300 assembly_YfgL outer 94.3 0.24 5.2E-06 49.4 9.4 96 387-494 278-374 (377)
409 PF12894 Apc4_WD40: Anaphase-p 94.3 0.14 3.1E-06 33.7 5.1 32 376-407 11-42 (47)
410 KOG0298 DEAD box-containing he 94.3 0.011 2.4E-07 64.5 -0.4 47 48-94 1149-1196(1394)
411 KOG1832 HIV-1 Vpr-binding prot 94.2 0.06 1.3E-06 56.7 4.6 56 374-436 1099-1154(1516)
412 KOG2444 WD40 repeat protein [G 94.1 0.22 4.7E-06 44.5 7.4 101 387-494 69-172 (238)
413 KOG3970 Predicted E3 ubiquitin 94.1 0.037 8E-07 48.4 2.5 47 51-97 49-105 (299)
414 PF10186 Atg14: UV radiation r 93.9 2.4 5.2E-05 40.6 15.2 20 54-81 1-20 (302)
415 PF15492 Nbas_N: Neuroblastoma 93.8 1.2 2.7E-05 41.1 11.7 94 374-468 145-271 (282)
416 KOG1275 PAB-dependent poly(A) 93.7 0.4 8.7E-06 51.0 9.6 92 387-492 146-238 (1118)
417 KOG2114 Vacuolar assembly/sort 93.6 1.1 2.5E-05 47.4 12.4 135 349-488 93-234 (933)
418 PHA03096 p28-like protein; Pro 93.5 0.033 7.1E-07 52.3 1.3 43 53-95 179-232 (284)
419 KOG3617 WD40 and TPR repeat-co 93.5 0.058 1.3E-06 56.5 3.1 70 379-456 62-131 (1416)
420 COG3386 Gluconolactonase [Carb 93.4 1.1 2.3E-05 43.1 11.5 110 377-488 163-274 (307)
421 KOG2079 Vacuolar assembly/sort 93.3 0.27 5.9E-06 53.1 7.7 95 342-449 103-198 (1206)
422 PF04762 IKI3: IKI3 family; I 93.3 0.57 1.2E-05 52.1 10.6 105 376-491 209-326 (928)
423 KOG1812 Predicted E3 ubiquitin 93.1 0.054 1.2E-06 53.6 2.1 48 52-99 146-205 (384)
424 COG5109 Uncharacterized conser 93.0 0.05 1.1E-06 50.2 1.7 50 48-97 332-387 (396)
425 PF10313 DUF2415: Uncharacteri 92.8 0.48 1E-05 30.3 5.4 32 426-457 1-34 (43)
426 KOG1832 HIV-1 Vpr-binding prot 92.8 0.23 5.1E-06 52.5 6.2 63 424-488 1100-1162(1516)
427 PF14569 zf-UDP: Zinc-binding 92.8 0.083 1.8E-06 38.0 2.1 46 53-98 10-63 (80)
428 KOG1940 Zn-finger protein [Gen 92.7 0.063 1.4E-06 49.7 1.9 43 52-94 158-204 (276)
429 PHA02825 LAP/PHD finger-like p 92.7 0.097 2.1E-06 43.7 2.8 48 50-98 6-60 (162)
430 PF02897 Peptidase_S9_N: Proly 92.7 1.3 2.9E-05 44.7 11.7 102 379-489 126-246 (414)
431 KOG4649 PQQ (pyrrolo-quinoline 92.7 1.8 3.9E-05 39.6 10.7 96 388-494 23-118 (354)
432 KOG3579 Predicted E3 ubiquitin 92.6 0.099 2.1E-06 47.5 2.9 36 51-86 267-306 (352)
433 KOG1920 IkappaB kinase complex 92.6 0.61 1.3E-05 51.2 9.2 96 380-486 199-306 (1265)
434 PF05883 Baculo_RING: Baculovi 92.6 0.047 1E-06 44.3 0.8 43 52-94 26-77 (134)
435 PRK13616 lipoprotein LpqB; Pro 92.5 1 2.2E-05 47.6 10.7 104 377-494 350-471 (591)
436 PF08746 zf-RING-like: RING-li 92.4 0.091 2E-06 33.9 1.8 38 55-92 1-43 (43)
437 KOG1912 WD40 repeat protein [G 92.3 0.39 8.6E-06 50.1 7.0 92 377-478 16-119 (1062)
438 PF07433 DUF1513: Protein of u 92.2 1.8 3.9E-05 41.1 10.8 99 381-488 9-117 (305)
439 KOG3268 Predicted E3 ubiquitin 92.1 0.065 1.4E-06 45.1 1.1 49 50-98 163-229 (234)
440 KOG0882 Cyclophilin-related pe 92.1 0.46 9.9E-06 46.5 6.8 90 374-464 142-239 (558)
441 PHA02562 46 endonuclease subun 92.0 4.8 0.0001 42.5 15.4 15 85-99 283-297 (562)
442 KOG4445 Uncharacterized conser 91.7 0.029 6.3E-07 51.3 -1.6 47 52-98 115-187 (368)
443 KOG2932 E3 ubiquitin ligase in 91.6 0.072 1.6E-06 49.0 0.9 41 54-96 92-133 (389)
444 PF07191 zinc-ribbons_6: zinc- 91.6 0.037 8E-07 39.3 -0.8 42 52-98 1-42 (70)
445 KOG3113 Uncharacterized conser 91.5 0.13 2.8E-06 46.0 2.3 51 51-103 110-164 (293)
446 PF04053 Coatomer_WDAD: Coatom 91.4 2 4.4E-05 43.5 11.1 51 438-492 117-167 (443)
447 PF06977 SdiA-regulated: SdiA- 91.4 2 4.4E-05 39.8 10.2 112 374-487 115-239 (248)
448 PHA02862 5L protein; Provision 91.3 0.12 2.5E-06 42.2 1.6 46 54-100 4-56 (156)
449 PF03854 zf-P11: P-11 zinc fin 91.1 0.086 1.9E-06 33.9 0.6 31 67-97 15-46 (50)
450 PF03178 CPSF_A: CPSF A subuni 91.0 4.4 9.5E-05 39.3 12.8 108 375-494 87-197 (321)
451 KOG2034 Vacuolar sorting prote 90.9 0.086 1.9E-06 55.8 0.8 37 48-84 813-851 (911)
452 PF15390 DUF4613: Domain of un 90.9 2.4 5.2E-05 43.4 10.6 112 374-488 54-174 (671)
453 KOG1920 IkappaB kinase complex 90.8 2.2 4.7E-05 47.2 11.0 111 376-489 109-261 (1265)
454 COG0823 TolB Periplasmic compo 90.8 1.4 3.1E-05 44.4 9.2 104 376-489 192-301 (425)
455 PF10083 DUF2321: Uncharacteri 90.8 1.3 2.8E-05 36.9 7.2 67 71-152 27-93 (158)
456 KOG4460 Nuclear pore complex, 90.7 1.2 2.5E-05 44.8 8.1 122 339-461 53-203 (741)
457 KOG4649 PQQ (pyrrolo-quinoline 90.6 2.8 6.1E-05 38.4 9.8 83 387-478 62-145 (354)
458 PF10313 DUF2415: Uncharacteri 90.6 0.91 2E-05 29.0 4.9 32 377-408 1-35 (43)
459 PF14870 PSII_BNR: Photosynthe 90.4 6.4 0.00014 37.7 12.7 105 376-490 144-253 (302)
460 PRK02888 nitrous-oxide reducta 90.3 2.4 5.2E-05 44.3 10.4 79 378-457 322-405 (635)
461 PF07433 DUF1513: Protein of u 90.2 5.4 0.00012 37.9 11.9 110 375-491 161-278 (305)
462 PRK02888 nitrous-oxide reducta 90.1 3.4 7.5E-05 43.1 11.3 72 419-492 314-397 (635)
463 COG0823 TolB Periplasmic compo 89.6 1.5 3.2E-05 44.3 8.2 102 378-489 239-345 (425)
464 TIGR03300 assembly_YfgL outer 89.2 2.7 5.9E-05 41.8 9.9 92 388-494 241-333 (377)
465 PF12234 Rav1p_C: RAVE protein 89.1 4.2 9.1E-05 42.8 11.2 102 379-488 32-147 (631)
466 KOG2395 Protein involved in va 88.5 2.4 5.3E-05 42.6 8.5 92 393-490 399-492 (644)
467 PF15290 Syntaphilin: Golgi-lo 88.3 6.3 0.00014 36.3 10.3 20 193-212 120-139 (305)
468 COG3813 Uncharacterized protei 88.2 0.44 9.4E-06 33.6 2.3 39 67-107 24-62 (84)
469 COG3391 Uncharacterized conser 88.0 6.1 0.00013 39.4 11.4 105 379-494 76-185 (381)
470 KOG4499 Ca2+-binding protein R 88.0 7.9 0.00017 35.0 10.5 107 379-487 160-272 (310)
471 PF00930 DPPIV_N: Dipeptidyl p 87.5 1.4 3.1E-05 43.4 6.5 82 397-490 22-121 (353)
472 TIGR01562 FdhE formate dehydro 87.2 0.29 6.3E-06 46.5 1.4 44 52-95 184-233 (305)
473 PRK11138 outer membrane biogen 87.0 5.2 0.00011 40.1 10.4 96 387-494 293-389 (394)
474 KOG2979 Protein involved in DN 86.7 0.32 7E-06 44.0 1.3 42 52-93 176-220 (262)
475 PF06977 SdiA-regulated: SdiA- 86.7 17 0.00038 33.7 12.7 106 374-488 19-136 (248)
476 PF08553 VID27: VID27 cytoplas 86.5 3.2 6.8E-05 45.0 8.7 104 339-455 543-646 (794)
477 KOG2042 Ubiquitin fusion degra 86.4 0.94 2E-05 49.2 4.7 71 46-116 864-935 (943)
478 PF13240 zinc_ribbon_2: zinc-r 86.2 0.26 5.5E-06 26.9 0.2 22 74-95 1-22 (23)
479 PRK02224 chromosome segregatio 86.1 16 0.00035 41.0 14.7 16 86-101 451-466 (880)
480 PF04216 FdhE: Protein involve 86.1 0.22 4.9E-06 47.5 -0.0 44 52-95 172-220 (290)
481 PF10146 zf-C4H2: Zinc finger- 86.1 23 0.0005 32.4 12.8 41 166-206 36-76 (230)
482 PF07569 Hira: TUP1-like enhan 86.0 4.3 9.3E-05 36.9 8.3 72 384-457 18-96 (219)
483 KOG1428 Inhibitor of type V ad 85.9 0.65 1.4E-05 51.8 3.2 46 52-97 3486-3544(3738)
484 PF12906 RINGv: RING-variant d 85.8 0.44 9.5E-06 31.4 1.3 38 55-92 1-47 (47)
485 PF04053 Coatomer_WDAD: Coatom 85.5 3.8 8.2E-05 41.6 8.3 87 388-488 117-214 (443)
486 PLN02638 cellulose synthase A 85.5 0.47 1E-05 52.1 2.0 45 53-97 18-70 (1079)
487 PF05605 zf-Di19: Drought indu 85.1 0.52 1.1E-05 32.1 1.4 37 52-95 2-40 (54)
488 KOG1916 Nuclear protein, conta 85.0 0.75 1.6E-05 49.0 3.1 117 374-495 130-261 (1283)
489 PF08606 Prp19: Prp19/Pso4-lik 84.9 6.8 0.00015 28.0 6.8 37 124-160 4-40 (70)
490 TIGR03606 non_repeat_PQQ dehyd 84.8 20 0.00044 36.4 13.0 60 376-436 29-89 (454)
491 PF10168 Nup88: Nuclear pore c 84.7 12 0.00026 40.6 12.0 80 377-457 85-180 (717)
492 KOG1815 Predicted E3 ubiquitin 84.3 0.43 9.3E-06 48.6 1.0 37 50-86 68-105 (444)
493 KOG2444 WD40 repeat protein [G 84.2 0.95 2.1E-05 40.5 3.0 64 339-408 71-134 (238)
494 PF10647 Gmad1: Lipoprotein Lp 83.8 18 0.0004 33.6 11.7 99 378-488 25-130 (253)
495 KOG0825 PHD Zn-finger protein 83.8 0.52 1.1E-05 49.2 1.3 47 51-97 95-154 (1134)
496 PF08728 CRT10: CRT10; InterP 83.7 7.1 0.00015 41.6 9.6 115 379-494 103-241 (717)
497 PRK10884 SH3 domain-containing 83.3 34 0.00073 30.7 12.5 23 188-210 137-159 (206)
498 PF06906 DUF1272: Protein of u 83.2 1.1 2.4E-05 30.1 2.2 26 72-99 29-54 (57)
499 PF07995 GSDH: Glucose / Sorbo 83.1 7.3 0.00016 38.0 9.0 109 379-491 4-135 (331)
500 KOG0827 Predicted E3 ubiquitin 83.1 0.16 3.4E-06 48.5 -2.4 45 54-98 198-246 (465)
No 1
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=5.2e-32 Score=250.70 Aligned_cols=381 Identities=16% Similarity=0.134 Sum_probs=240.6
Q ss_pred cccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhhhccCCCchhhhhh
Q 048199 53 MLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQ 131 (495)
Q Consensus 53 l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~~~~~~~~~~~~~~ 131 (495)
+.|.|.++++++||+. ..||+|.++.|++|+...++||+.+++++.++|++...-.. ..+.++++..++.+..
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~------v~pk~~satSIPalL~ 74 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPAQ------VRPKPPSATSIPALLK 74 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeecccccc------ccCCCCCccchHHHHH
Confidence 5799999999999966 59999999999999999999999999999998877654322 2455677888999999
Q ss_pred hhhhccCCcHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Q 048199 132 ALQQGCGVSVKEIDSLMSLLSEKKRKMEQEE------------AERNMQILLDFLHCLRKQKVDE----------LKEIQ 189 (495)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~------------~~~~~~~l~~~l~~~~~~~~~~----------l~~~~ 189 (495)
.+|.+|+..+.+-..+.+.|+..+++|.+.. ...+...-++.|.....+.-.. .....
T Consensus 75 ~lQdEWDavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav~~~~~~s~~~ 154 (506)
T KOG0289|consen 75 TLQDEWDAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAVPSLAQSSVVG 154 (506)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccchhh
Confidence 9999999999999999999999999998611 1122222233332222111100 00000
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHhhhhHHHHhccCCCccccccccccCCCCCCcccccccCCCCCCCCcccc
Q 048199 190 TDLH-------YIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNARGGSSAGSLQN 262 (495)
Q Consensus 190 ~~~~-------~l~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (495)
.+.. .-.+-+..++.+.+.|.+.+++..+.+....... +.+... -...++...++....+..+...
T Consensus 155 va~ge~~d~~g~s~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~---d~~~~~-~q~ash~gLH~t~~pgi~ald~--- 227 (506)
T KOG0289|consen 155 VAAGESEDQPGLSPEIIQKLEDKAQVLSQERKKRGKKLPEKLATT---DELSCL-LQVASHTGLHSTSTPGITALDI--- 227 (506)
T ss_pred hhcCCccccccCCHHHHHHHHHHHHHHHHHhhhccccCCcccccH---HHHHHH-HhcCCCcceeccCCCCeeEEee---
Confidence 0000 1123345555666666666665533321111000 000000 0000001111111111110000
Q ss_pred ccCCCccccccCCCCCCCCCCCCCCccccccchhhHhHhHHHHhHhHHHHHHHHHhhhhccCCCCccccc-cccccccCc
Q 048199 263 KKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESD-KNIIHREGY 341 (495)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~ 341 (495)
.........|....... +......+++. .+.++...+.. ....+....
T Consensus 228 ---~~s~~~ilTGG~d~~av------------~~d~~s~q~l~----------------~~~Gh~kki~~v~~~~~~~~v 276 (506)
T KOG0289|consen 228 ---IPSSSKILTGGEDKTAV------------LFDKPSNQILA----------------TLKGHTKKITSVKFHKDLDTV 276 (506)
T ss_pred ---cCCCCcceecCCCCceE------------EEecchhhhhh----------------hccCcceEEEEEEeccchhhe
Confidence 00000001111111100 01111122222 22333333332 223344556
Q ss_pred ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee
Q 048199 342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE 421 (495)
Q Consensus 342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 421 (495)
.+++.|+.+++|.....+ ....+. .|.++|+.+..||.|.||++++.|+++.+.|++++ .....
T Consensus 277 ~~aSad~~i~vws~~~~s---~~~~~~-----~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g--------~~lt~ 340 (506)
T KOG0289|consen 277 ITASADEIIRVWSVPLSS---EPTSSR-----PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG--------SQLTV 340 (506)
T ss_pred eecCCcceEEeecccccc---Cccccc-----cccccceeeeeccCCcEEEEecCCceEEEEEccCC--------cEEEE
Confidence 789999999999875322 112222 68999999999999999999999999999999998 22232
Q ss_pred cCC---CCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 422 MPT---RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 422 ~~~---~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..+ .-.+++.+|||| |.+|++|..||.|+|||+.++..+..|.+|+++|..++|+. ||++|+++++|+.|++
T Consensus 341 vs~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 341 VSDETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKL 415 (506)
T ss_pred EeeccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEE
Confidence 223 235899999999 99999999999999999999999999999999999999999 9999999999998874
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4e-25 Score=204.68 Aligned_cols=141 Identities=18% Similarity=0.238 Sum_probs=128.7
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
...+++++.|+++++|++. ...++.++. ||...|..++|||+|++|+|++.|.++++||+.++ ..
T Consensus 231 ~~~lat~s~Dgtvklw~~~---~e~~l~~l~-----gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-------~E 295 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLS---QETPLQDLE-----GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-------SE 295 (459)
T ss_pred ccceeeeccCCceeeeccC---CCcchhhhh-----cchhhheeeeecCCCceeeecccccchhhcccccc-------hh
Confidence 4468899999999999984 335566665 99999999999999999999999999999999997 34
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
....-+|...|.+++|+|| |.+++||+.|..-+|||+++|.++..|.||.+.|.+|+|+| ||++|||||.|+++||
T Consensus 296 lL~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 296 LLLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKV 371 (459)
T ss_pred hHhhcccccccceeEecCC-CceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEE
Confidence 4566689999999999999 99999999999999999999999999999999999999999 9999999999999986
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.2e-22 Score=184.28 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=133.6
Q ss_pred hhhhccCCCCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC
Q 048199 318 RRQMANQPHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV 396 (495)
Q Consensus 318 r~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~ 396 (495)
|+.....+|...+.+.. .+++..+++|+.|.++++||+ +...++.+++ +|...|.+++|+|||..||+|+.
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~---~TeTp~~t~K-----gH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDL---DTETPLFTCK-----GHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeecc---CCCCcceeec-----CCccEEEEEEECCCcchhhcccc
Confidence 34444555655544444 356788999999999999998 3445677777 99999999999999999999999
Q ss_pred CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCC----CCEEEEecCCCcEEEEeCCCCcceeecccccCcEE
Q 048199 397 SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFS----KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAW 472 (495)
Q Consensus 397 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~----~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~ 472 (495)
||+|++||..++... -....+|...|++++|.|-+ ..+|++++.||+|+|||+..+.++..+.||+.+|+
T Consensus 178 dg~I~lwdpktg~~~------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQI------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT 251 (480)
T ss_pred CCeEEEecCCCCCcc------cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence 999999999887111 11233688899999998752 45899999999999999999999999999999999
Q ss_pred EEEeecCCCCeEEEeeCCCcEeC
Q 048199 473 SVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 473 ~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
||.|-. ..+|+|||.|++|||
T Consensus 252 CvrwGG--~gliySgS~DrtIkv 272 (480)
T KOG0271|consen 252 CVRWGG--EGLIYSGSQDRTIKV 272 (480)
T ss_pred EEEEcC--CceEEecCCCceEEE
Confidence 999974 469999999999986
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.87 E-value=4.2e-22 Score=198.22 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=133.8
Q ss_pred CccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 048199 327 TKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFA 406 (495)
Q Consensus 327 ~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~ 406 (495)
.++......++...+.+.+.|+++++|.+.. ...+...+ ||..+|+++.|+|-|-+|||+|.|++.++|..+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t---~s~~V~y~-----GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT---WSCLVIYK-----GHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeeccc---ceeEEEec-----CCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 3455556667778889999999999999853 34455555 899999999999999999999999999999998
Q ss_pred ccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE
Q 048199 407 SVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV 485 (495)
Q Consensus 407 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~ 485 (495)
.. .|.. ..+|.+.|.|+.|||+ .+|+++||.|.+|++||+.+|..++.|.||.++|.+|+|+| +|.+|+
T Consensus 524 ~~--------~PlRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~La 593 (707)
T KOG0263|consen 524 HN--------KPLRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLA 593 (707)
T ss_pred cC--------CchhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEe
Confidence 86 4443 3478899999999999 99999999999999999999999999999999999999999 999999
Q ss_pred EeeCCCcEeC
Q 048199 486 SGSDDCKVLY 495 (495)
Q Consensus 486 s~s~D~~v~l 495 (495)
||+.||.|+|
T Consensus 594 Sg~ed~~I~i 603 (707)
T KOG0263|consen 594 SGDEDGLIKI 603 (707)
T ss_pred ecccCCcEEE
Confidence 9999999975
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.2e-21 Score=181.65 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=132.9
Q ss_pred ccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199 332 DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 332 ~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
..+..+++...+|+-|..-+|||+. ..+.+..+. +|...|.+++|+|+|-.+||||.|.+++|||++..
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlR---tgr~im~L~-----gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r--- 377 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLR---TGRCIMFLA-----GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR--- 377 (459)
T ss_pred eEecCCCceeeccCccchhheeecc---cCcEEEEec-----ccccceeeEeECCCceEEeecCCCCcEEEeeeccc---
Confidence 3445788889999999999999983 456677777 89999999999999999999999999999999986
Q ss_pred CCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 412 PADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 412 ~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
..+..+ .|.+-|+.|.|+|..|.+|+|+++|++++||..++..+++++.||++.|.++++++ |+.+++|+|.|
T Consensus 378 -----~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~D 451 (459)
T KOG0272|consen 378 -----SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFD 451 (459)
T ss_pred -----ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccC
Confidence 334444 68888999999997799999999999999999999999999999999999999999 99999999999
Q ss_pred CcEeC
Q 048199 491 CKVLY 495 (495)
Q Consensus 491 ~~v~l 495 (495)
+++|+
T Consensus 452 RT~KL 456 (459)
T KOG0272|consen 452 RTIKL 456 (459)
T ss_pred ceeee
Confidence 99986
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.6e-22 Score=181.65 Aligned_cols=143 Identities=19% Similarity=0.297 Sum_probs=127.0
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
.++.+++|++|+++.+|+... ..+++..+. ||...|..+.|+||+.++|++|.|++||+||-+++ +
T Consensus 335 ~~erlVSgsDd~tlflW~p~~--~kkpi~rmt-----gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-------k 400 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNPFK--SKKPITRMT-----GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-------K 400 (480)
T ss_pred CcceeEEecCCceEEEecccc--cccchhhhh-----chhhheeeEEECCCccEEEEeecccceeeeeCCCc-------c
Confidence 347799999999999999742 223444444 89999999999999999999999999999999998 3
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
......+|-+.|+.++|+.| ..+|+||+.|.++++||+++.+....+.||.+.|++++|+| ||..+++|+.|..++|
T Consensus 401 ~lasfRGHv~~VYqvawsaD-sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~l 477 (480)
T KOG0271|consen 401 FLASFRGHVAAVYQVAWSAD-SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRL 477 (480)
T ss_pred hhhhhhhccceeEEEEeccC-ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEe
Confidence 44445578899999999999 89999999999999999999999999999999999999999 9999999999999885
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.86 E-value=1.2e-21 Score=195.14 Aligned_cols=145 Identities=18% Similarity=0.302 Sum_probs=128.2
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
+.+-+-.+++|+.|.+.++|.... ..++..+. ||.+-|.|+.|||+++|++|||.|++||+||+.++
T Consensus 501 F~P~GyYFatas~D~tArLWs~d~---~~PlRifa-----ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G----- 567 (707)
T KOG0263|consen 501 FAPRGYYFATASHDQTARLWSTDH---NKPLRIFA-----GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG----- 567 (707)
T ss_pred ecCCceEEEecCCCceeeeeeccc---CCchhhhc-----ccccccceEEECCcccccccCCCCceEEEEEcCCC-----
Confidence 334566789999999999998743 33343333 89999999999999999999999999999999998
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
...-...+|.++|.+++|+|+ |.+|++|+.||.|++||+.++..+..+.+|++.|+++.|+. +|.+||+||.|.+|
T Consensus 568 --~~VRiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 568 --NSVRIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSV 643 (707)
T ss_pred --cEEEEecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeE
Confidence 333344589999999999999 99999999999999999999999999999999999999999 99999999999999
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
++
T Consensus 644 ~l 645 (707)
T KOG0263|consen 644 RL 645 (707)
T ss_pred EE
Confidence 75
No 8
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.85 E-value=5.4e-19 Score=192.46 Aligned_cols=197 Identities=39% Similarity=0.715 Sum_probs=144.4
Q ss_pred hhHhHhHHHHhHhHHHHHHHHHhhhhccCC---CCccccc----------------cc-------cccccCcccchh---
Q 048199 296 SVVRKKRVHAQFNDLQECYLQKRRQMANQP---HTKQESD----------------KN-------IIHREGYNAGLA--- 346 (495)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~---~~~~~~~----------------~~-------~~~~~~~~~g~~--- 346 (495)
...+..||+.+|.+++++||..|....... ....... .. ............
T Consensus 377 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (793)
T PLN00181 377 TLLESSRLMRNLKKLESVYFATRYRQIKAAAAAEKPLARYYSALSENGRSSEKSSMSNPAKPPDFYINDSRQGGWIDPFL 456 (793)
T ss_pred cchhhhHHHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 344589999999999999999987542211 0000000 00 000001000011
Q ss_pred hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC
Q 048199 347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS 426 (495)
Q Consensus 347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 426 (495)
++-+++|++ ........++.+++.+|.+.|.+++|+|++++|++||.|++|+|||+..........+.++..+.+..
T Consensus 457 ~gl~~~~~~---~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 533 (793)
T PLN00181 457 EGLCKYLSF---SKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRS 533 (793)
T ss_pred hhhhhhhcc---cceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccC
Confidence 334566665 44455666677788889999999999999999999999999999998653222122234555556677
Q ss_pred CeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 427 KLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 427 ~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+.+++|++..+.+|++|+.||+|+|||+.++..+..+.+|.+.|++++|+|.++.+|+|||.|++|+|
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i 602 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL 602 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEE
Confidence 899999998768899999999999999999999999999999999999999757899999999999985
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.83 E-value=3.6e-20 Score=164.50 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=126.9
Q ss_pred cCCCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEE
Q 048199 323 NQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIK 401 (495)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~ 401 (495)
+.+|.....+-.+.+...+.+|+.|.+..+||+. +...+..+. ||++-|.+|++.| +++.|++|+-|++.+
T Consensus 141 l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie---~g~~~~~f~-----GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE---TGQQTQVFH-----GHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred ecCccceeEEEEEcCCCceEecCCCceEEEEEcc---cceEEEEec-----CCcccEEEEecCCCCCCeEEeccccccee
Confidence 3456666666667778888999999999999994 334455555 9999999999999 999999999999999
Q ss_pred EEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc---------------------
Q 048199 402 VFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS--------------------- 460 (495)
Q Consensus 402 vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~--------------------- 460 (495)
+||++.+ .......+|.+.|+++.|+|+ |.-|++|+.|++.++||++..+.
T Consensus 213 lWD~R~~-------~c~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 213 LWDVRSG-------QCVQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred eeeccCc-------ceeEeecccccccceEEEccC-CCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 9999997 344455578888888888888 77788888888888887765433
Q ss_pred -----------------------eeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 461 -----------------------VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 461 -----------------------~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+..+.||+++|.++..+| ||.-++|||+|.++||
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRI 341 (343)
T ss_pred ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheee
Confidence 334467999999999999 9999999999999886
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.83 E-value=3.9e-20 Score=163.31 Aligned_cols=153 Identities=19% Similarity=0.223 Sum_probs=126.2
Q ss_pred CCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 048199 326 HTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFD 404 (495)
Q Consensus 326 ~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd 404 (495)
|...+.+.. ..++....+|+.|.++++||+.. ......+. ||+.-|.+++|+||...++|||.|++|++|+
T Consensus 62 HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~---g~~t~~f~-----GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 62 HSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT---GESTRRFV-----GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred cceEecceEEccCCceEEeccccceEEEEEecC---CcEEEEEE-----ecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 344333333 34566778999999999999853 13333333 9999999999999999999999999999999
Q ss_pred ccccccCCCCcCCCeee--cCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCC
Q 048199 405 FASVVNEPADVHCPVVE--MPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP 481 (495)
Q Consensus 405 ~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g 481 (495)
+-.. +.... ..+.+.|+++.|+|.. ..+|++++.|++|++||+++.+....|.||.+.++.+.++| ||
T Consensus 134 t~g~--------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DG 204 (315)
T KOG0279|consen 134 TLGV--------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DG 204 (315)
T ss_pred eccc--------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CC
Confidence 9876 22222 2236789999999984 67999999999999999999999999999999999999999 99
Q ss_pred CeEEEeeCCCcEeC
Q 048199 482 SMLVSGSDDCKVLY 495 (495)
Q Consensus 482 ~~l~s~s~D~~v~l 495 (495)
..+++|+.||.+.+
T Consensus 205 slcasGgkdg~~~L 218 (315)
T KOG0279|consen 205 SLCASGGKDGEAML 218 (315)
T ss_pred CEEecCCCCceEEE
Confidence 99999999998754
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.82 E-value=9.9e-21 Score=174.91 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=127.5
Q ss_pred ccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 048199 328 KQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS 407 (495)
Q Consensus 328 ~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~ 407 (495)
......+..++.-+.+|..++.|++|+..- ..+..+.. +|...|++++|+|++..|+|+|.|++|+|||+..
T Consensus 140 ~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm----nnVk~~~a----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMISGDKGGMIKYWQPNM----NNVKIIQA----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred cceeEEEccCCCEEEEcCCCceEEecccch----hhhHHhhH----hhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 344445566777789999999999999731 11222221 5679999999999999999999999999999988
Q ss_pred cccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199 408 VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
. .......+|.-.|.+++|||. ..+|++|+.|..|++||.++|.++.++.+|...|..+.|++ ++.+|+|+
T Consensus 212 ~-------kee~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~ 282 (464)
T KOG0284|consen 212 P-------KEERVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTG 282 (464)
T ss_pred C-------chhheeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEc
Confidence 7 222333578888999999999 88999999999999999999999999999999999999999 99999999
Q ss_pred eCCCcEeC
Q 048199 488 SDDCKVLY 495 (495)
Q Consensus 488 s~D~~v~l 495 (495)
|.|..++|
T Consensus 283 skD~~~kv 290 (464)
T KOG0284|consen 283 SKDQSCKV 290 (464)
T ss_pred cCCceEEE
Confidence 99998875
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=159.92 Aligned_cols=115 Identities=22% Similarity=0.259 Sum_probs=103.2
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
+.+|++.+.+..|-+ ...|+|+|.|.+..+||++++ .......+|.+.|.++++.|.+++.|+||+-|++-+
T Consensus 141 l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g-------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG-------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred ecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc-------eEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 458999999999987 456669999999999999998 233344479999999999995599999999999999
Q ss_pred EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+||++.+.++++|.+|+..|++|.|.| +|.-++|||+|++.|+
T Consensus 213 lWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRl 255 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRL 255 (343)
T ss_pred eeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEE
Confidence 999999999999999999999999999 9999999999999875
No 13
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.6e-19 Score=174.96 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=125.4
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
+..-.+.++++|.++++|+.. ......+++. ||+..|.+++|+| |.+.|+++|.|+||+||.+...
T Consensus 107 Pt~P~vLtsSDDm~iKlW~we--~~wa~~qtfe-----GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~------ 173 (794)
T KOG0276|consen 107 PTLPYVLTSSDDMTIKLWDWE--NEWACEQTFE-----GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP------ 173 (794)
T ss_pred CCCCeEEecCCccEEEEeecc--CceeeeeEEc-----CcceEEEEEEecCCCccceeeeeccccEEEEEcCCC------
Confidence 334557899999999999986 4455566665 9999999999999 7789999999999999999886
Q ss_pred cCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
..-....+|..+|++++|-+- +..+|+||+.|.+|+|||..+..|++++.||...|..+.|+| .-.+++|||.||+|
T Consensus 174 -~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 174 -HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISGSEDGTV 251 (794)
T ss_pred -CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEecCCccE
Confidence 222333479999999999654 256999999999999999999999999999999999999999 88899999999999
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
||
T Consensus 252 ri 253 (794)
T KOG0276|consen 252 RI 253 (794)
T ss_pred EE
Confidence 86
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=5.2e-19 Score=174.72 Aligned_cols=153 Identities=21% Similarity=0.393 Sum_probs=134.6
Q ss_pred CCCcccccccc-ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 048199 325 PHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVF 403 (495)
Q Consensus 325 ~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vw 403 (495)
.|++.++.... .+...+++|+.|.+.+||++. ....+.++. ||+..|+++.|+|..++++|+|.|+|||||
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le---~~~l~~vLs-----GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE---QLRLLGVLS-----GHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeeccc---CceEEEEee-----CCccceEEEEeccccceeEeccCCceEEEE
Confidence 45566666554 455667899999999999984 556677777 999999999999999999999999999999
Q ss_pred EccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCe
Q 048199 404 DFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSM 483 (495)
Q Consensus 404 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~ 483 (495)
.+.+. .+....-+|...|..+.|-.+ +..|+|++.||-|++|+++++.|+.++.+|+++||+++-++ .+.+
T Consensus 533 ~is~f-------SClkT~eGH~~aVlra~F~~~-~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~-~~~~ 603 (775)
T KOG0319|consen 533 SISTF-------SCLKTFEGHTSAVLRASFIRN-GKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP-LLDM 603 (775)
T ss_pred Eeccc-------eeeeeecCccceeEeeeeeeC-CcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC-ccce
Confidence 99997 444455579999999999888 89999999999999999999999999999999999999999 8889
Q ss_pred EEEeeCCCcEe
Q 048199 484 LVSGSDDCKVL 494 (495)
Q Consensus 484 l~s~s~D~~v~ 494 (495)
++||+.||.|-
T Consensus 604 ~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 604 FVTGGGDGRII 614 (775)
T ss_pred eEecCCCeEEE
Confidence 99999999874
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.79 E-value=5.4e-19 Score=156.12 Aligned_cols=144 Identities=15% Similarity=0.171 Sum_probs=121.7
Q ss_pred cccCcccchhhHHhhhhhhhcccC--ceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSR--LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
....+.+++.|.++.+|++.+-+. ..++..+. ||...|.++..+++|++++++|.|+++|+||+.++
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-----GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g------ 95 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-----GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG------ 95 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeee-----ccceEecceEEccCCceEEeccccceEEEEEecCC------
Confidence 346678899999999999865322 12333344 89999999999999999999999999999999997
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc--cCcEEEEEeecCC--CCeEEEeeCC
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH--EKRAWSVDFSRTE--PSMLVSGSDD 490 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~--g~~l~s~s~D 490 (495)
.......+|...|.+++|++| ...|+||+.|.+|++||+. |.+..++..+ +++|.+|.|+| + ..+|+++|.|
T Consensus 96 -~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP-~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 96 -ESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSP-NESNPIIVSASWD 171 (315)
T ss_pred -cEEEEEEecCCceEEEEecCC-CceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcC-CCCCcEEEEccCC
Confidence 344556689999999999999 8899999999999999987 6666666554 78999999999 5 6799999999
Q ss_pred CcEeC
Q 048199 491 CKVLY 495 (495)
Q Consensus 491 ~~v~l 495 (495)
++||+
T Consensus 172 ktvKv 176 (315)
T KOG0279|consen 172 KTVKV 176 (315)
T ss_pred ceEEE
Confidence 99985
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.79 E-value=7.5e-19 Score=165.35 Aligned_cols=147 Identities=16% Similarity=0.265 Sum_probs=120.8
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
..+.+...+++.+-|..+.++.+ +...++.++. ||.+.|.+|.|+|.+.+|+|+|.|+|++||.....
T Consensus 324 VdW~~~~~F~ts~td~~i~V~kv---~~~~P~~t~~-----GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---- 391 (524)
T KOG0273|consen 324 VDWQSNDEFATSSTDGCIHVCKV---GEDRPVKTFI-----GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---- 391 (524)
T ss_pred eEEecCceEeecCCCceEEEEEe---cCCCcceeee-----cccCceEEEEECCCCceEEEecCCCeeEeeecCCC----
Confidence 44555566666666766777666 3334454444 99999999999999999999999999999997765
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCC--------CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFS--------KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML 484 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~--------~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l 484 (495)
.+......|...|+.+.|+|.+ +..|++++.|++|++||+..|.++.+|..|..+|++|+|+| +|.++
T Consensus 392 ---~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~yl 467 (524)
T KOG0273|consen 392 ---NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYL 467 (524)
T ss_pred ---cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEE
Confidence 2223334577778888888863 56899999999999999999999999999999999999999 99999
Q ss_pred EEeeCCCcEeC
Q 048199 485 VSGSDDCKVLY 495 (495)
Q Consensus 485 ~s~s~D~~v~l 495 (495)
|+|+.||.|.|
T Consensus 468 AsGs~dg~V~i 478 (524)
T KOG0273|consen 468 ASGSLDGCVHI 478 (524)
T ss_pred EecCCCCeeEe
Confidence 99999999875
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.8e-18 Score=175.57 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=127.6
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
.+..++..+++|++|.+++||++. .....+.+++ +|...|++++|+|+++++++|+.|++|+|||+.++
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~--~~~~~~~~l~-----gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~---- 278 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLK--DDGRNLKTLK-----GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG---- 278 (456)
T ss_pred EECCCCcEEEEecCCceEEEeecc--CCCeEEEEec-----CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----
Confidence 344566688999999999999993 3345567777 99999999999999999999999999999999986
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--ceeecccccCc--EEEEEeecCCCCeEEEee
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKR--AWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~--v~~v~~~~~~g~~l~s~s 488 (495)
......-+|.++|++++|+++ +++|++++.|+.|+|||+.++. ++..+.++... ++++.|+| ++.+|++++
T Consensus 279 ---~~~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~ 353 (456)
T KOG0266|consen 279 ---ECVRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSAS 353 (456)
T ss_pred ---eEEEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEec
Confidence 233344468889999999999 9999999999999999999999 67888887665 99999999 999999999
Q ss_pred CCCcEeC
Q 048199 489 DDCKVLY 495 (495)
Q Consensus 489 ~D~~v~l 495 (495)
.|+.+++
T Consensus 354 ~d~~~~~ 360 (456)
T KOG0266|consen 354 LDRTLKL 360 (456)
T ss_pred CCCeEEE
Confidence 9999874
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.1e-18 Score=177.32 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=126.8
Q ss_pred ccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199 332 DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 332 ~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
.....++..+..++.|..+++|....... ..+..+ .+|...|++++|+|++.++++++.|++|+|||+...
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l-----~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--- 235 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLREL-----SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--- 235 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccc-hhhccc-----cccccceeeeEECCCCcEEEEecCCceEEEeeccCC---
Confidence 34556677788888899999999833221 123333 389999999999999999999999999999999432
Q ss_pred CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
........+|...|++++|+|+ ++.+++|+.|++|+|||+++++++..+.+|.+.|.+++|++ ++.+|++++.|+
T Consensus 236 ---~~~~~~l~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 236 ---GRNLKTLKGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDG 310 (456)
T ss_pred ---CeEEEEecCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCc
Confidence 0233444589999999999999 69999999999999999999999999999999999999999 999999999999
Q ss_pred cEeC
Q 048199 492 KVLY 495 (495)
Q Consensus 492 ~v~l 495 (495)
.|+|
T Consensus 311 ~i~v 314 (456)
T KOG0266|consen 311 TIRV 314 (456)
T ss_pred cEEE
Confidence 9985
No 19
>PTZ00421 coronin; Provisional
Probab=99.78 E-value=1.6e-18 Score=175.59 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=117.9
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeecc-------ccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccc
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-------DIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVV 409 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~-------~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~ 409 (495)
.+.+.++..++....|+... ....+..-..| .+.+|.+.|++++|+| ++++|++|+.|++|++||+....
T Consensus 32 ~~~~~~~n~~~~a~~w~~~g--g~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~ 109 (493)
T PTZ00421 32 CSNTIACNDRFIAVPWQQLG--STAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEG 109 (493)
T ss_pred CCCcEeECCceEEEEEecCC--ceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCc
Confidence 34456666666666776421 11111111111 2448999999999999 88999999999999999997641
Q ss_pred cCCCCcCCCe-eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 410 NEPADVHCPV-VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 410 ~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
... ....++ ...+|...|.+++|+|+.+++|++|+.|++|+|||+.++..+..+.+|...|++++|+| +|.+|++++
T Consensus 110 ~~~-~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs 187 (493)
T PTZ00421 110 LTQ-NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTS 187 (493)
T ss_pred ccc-ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEec
Confidence 100 001222 33468889999999998567999999999999999999999999999999999999999 999999999
Q ss_pred CCCcEeC
Q 048199 489 DDCKVLY 495 (495)
Q Consensus 489 ~D~~v~l 495 (495)
.|++|+|
T Consensus 188 ~Dg~IrI 194 (493)
T PTZ00421 188 KDKKLNI 194 (493)
T ss_pred CCCEEEE
Confidence 9999985
No 20
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.78 E-value=1.3e-19 Score=171.01 Aligned_cols=169 Identities=20% Similarity=0.261 Sum_probs=147.3
Q ss_pred HHHHHHHhhhhccCCCCcccccccccc--ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC
Q 048199 311 QECYLQKRRQMANQPHTKQESDKNIIH--REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD 388 (495)
Q Consensus 311 ~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~ 388 (495)
..+|+.++....+.+|...+....+.. .-.+.+|+-|..|+||++- +....+.++. ||+.+|++++|+++|
T Consensus 198 ~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy--~~~~~lrtf~-----gH~k~Vrd~~~s~~g 270 (503)
T KOG0282|consen 198 ERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY--DDRRCLRTFK-----GHRKPVRDASFNNCG 270 (503)
T ss_pred ceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEe--cCcceehhhh-----cchhhhhhhhccccC
Confidence 467888888888888887777766554 5567899999999999974 4445566665 999999999999999
Q ss_pred CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc
Q 048199 389 QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE 468 (495)
Q Consensus 389 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~ 468 (495)
..|+|+|.|+.|++||++++ .....+.....++++.|+|++.+.|++|+.|+.|+.||++++..++.+..|-
T Consensus 271 ~~fLS~sfD~~lKlwDtETG--------~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL 342 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETG--------QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL 342 (503)
T ss_pred Ceeeeeecceeeeeeccccc--------eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence 99999999999999999998 4455566667789999999976999999999999999999999999999999
Q ss_pred CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 469 KRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 469 ~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+.|..+.|-+ +|..++|.|+|++|+|
T Consensus 343 g~i~~i~F~~-~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 343 GAILDITFVD-EGRRFISSSDDKSVRI 368 (503)
T ss_pred hheeeeEEcc-CCceEeeeccCccEEE
Confidence 9999999999 9999999999999985
No 21
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=1.2e-18 Score=163.72 Aligned_cols=151 Identities=17% Similarity=0.336 Sum_probs=124.3
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
-.+++|++|.++.+||+..++........+ ..+.+|.+.|.+++||+ +..+|++++.|+.+.|||++++ . ...
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~-~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~---~~~ 264 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPK-TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--T---SKP 264 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccce-EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--C---CCC
Confidence 446789999999999998776631111111 12238999999999999 6779999999999999999974 1 022
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
......|.+.|+|++|+|.++.+||||+.|++|.+||+|+ ..++.++.+|.+.|..|.|+|.+...|||++.|+.+.|
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence 3334478899999999999999999999999999999997 46889999999999999999988889999999999864
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.77 E-value=3.5e-19 Score=164.76 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=127.0
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
...+.+++.++|++++||++......+ .+. ||.--|+++.|||...++++||.|..|++||.+++
T Consensus 190 pnDskF~t~SdDg~ikiWdf~~~kee~---vL~-----GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg------- 254 (464)
T KOG0284|consen 190 PNDSKFLTCSDDGTIKIWDFRMPKEER---VLR-----GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG------- 254 (464)
T ss_pred CCCceeEEecCCCeEEEEeccCCchhh---eec-----cCCCCcceeccCCccceeEEccCCceeEeecCCCc-------
Confidence 356789999999999999996543322 234 89999999999999999999999999999999998
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+....-.|...|..+.|+|+ +++|+|++.|..++++|+++.+.+.++.+|++.|+++.|+|.+..+|.+|+.||.|.
T Consensus 255 ~cl~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 255 SCLATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred chhhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence 344444468888999999999 799999999999999999999999999999999999999999999999999999875
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.7e-18 Score=149.60 Aligned_cols=148 Identities=20% Similarity=0.310 Sum_probs=127.3
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
+.+..+++|+.|.++.||.-. -+.++.+..+. ||...|.+++|+++|++|||++.|++|-||.+... .+ .
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~-~~efecv~~lE-----GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded-dE---f 140 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKE-DGEFECVATLE-----GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED-DE---F 140 (312)
T ss_pred CCCcEEEEeeccceEEEeecC-CCceeEEeeee-----ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC-Cc---E
Confidence 456678999999999999853 36678888887 99999999999999999999999999999999854 11 1
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC---CcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT---QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.+......|...|-.+.|||. ..+|+|+++|.+|++|+-.. -.+++++.+|...|++++|++ +|..|+++++|++
T Consensus 141 ec~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~t 218 (312)
T KOG0645|consen 141 ECIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGT 218 (312)
T ss_pred EEEeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcc
Confidence 233344468888999999998 88999999999999998762 368999999999999999999 9999999999999
Q ss_pred EeC
Q 048199 493 VLY 495 (495)
Q Consensus 493 v~l 495 (495)
|+|
T Consensus 219 v~I 221 (312)
T KOG0645|consen 219 VSI 221 (312)
T ss_pred eEe
Confidence 986
No 24
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.4e-18 Score=151.47 Aligned_cols=144 Identities=22% Similarity=0.305 Sum_probs=123.7
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
....+.+++.|.+++||+..+ ...+.++. ||...|+...|+| ..++|+++|.|+++++||++..
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r---~~Sv~Tf~-----gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~------- 180 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNR---PNSVQTFN-----GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP------- 180 (311)
T ss_pred cceeEEeeccCCceEeecCCC---CcceEeec-----CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-------
Confidence 345567779999999999853 34466655 8999999999999 7889999999999999999876
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
........|...|.++.|+..+.+.++||+.|+.|++||+++ ..++..+.+|.-.|..|.|+|....+|+|+|+|=++|
T Consensus 181 gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 181 GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 233334467789999999999899999999999999999997 4678999999999999999997778999999999988
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
|
T Consensus 261 i 261 (311)
T KOG0277|consen 261 I 261 (311)
T ss_pred e
Confidence 6
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=5.4e-18 Score=154.91 Aligned_cols=172 Identities=15% Similarity=0.221 Sum_probs=135.8
Q ss_pred HhHhHHHHHHHHHhhhhccCCCCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEE
Q 048199 305 AQFNDLQECYLQKRRQMANQPHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIE 383 (495)
Q Consensus 305 ~~~~~l~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 383 (495)
..+-++...|-..+.. ..+...+.... .+.+..+.+.+.|.++++|++. ..-.+.++. +|...|..+.
T Consensus 174 ~~LWd~~~~~~c~ks~---~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~---tg~cv~t~~-----~h~ewvr~v~ 242 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSL---IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD---TGYCVKTFP-----GHSEWVRMVR 242 (406)
T ss_pred hhheeHHHHHHHHHHh---cCcccceeeEEEEecCCeeeecccccceeEEecc---cceeEEecc-----CchHhEEEEE
Confidence 4445555553333322 33443333333 3456778899999999999983 344566666 8999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC--------------CCCEEEEecCCCc
Q 048199 384 FDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF--------------SKNRIASSDYEGI 449 (495)
Q Consensus 384 ~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~--------------~~~~l~sg~~dg~ 449 (495)
.+.||.++++++.|.++++|-+.++ .+......|..+|-+++|-|. ++.++++|+.|++
T Consensus 243 v~~DGti~As~s~dqtl~vW~~~t~-------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 243 VNQDGTIIASCSNDQTLRVWVVATK-------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred ecCCeeEEEecCCCceEEEEEeccc-------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence 9999999999999999999999987 334444566777778887764 2369999999999
Q ss_pred EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|++||+.+|.++.++.||..+|.+++|+| .|.||+|+.+|+++++
T Consensus 316 Ik~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRV 360 (406)
T ss_pred EEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEE
Confidence 99999999999999999999999999999 9999999999999985
No 26
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.76 E-value=1.8e-18 Score=158.80 Aligned_cols=158 Identities=19% Similarity=0.291 Sum_probs=133.2
Q ss_pred ccCCCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 048199 322 ANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIK 401 (495)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~ 401 (495)
.+.+|...+....+.+.+...+++.|.+++.||+..- ..+..+.+ ...+.++.++|..++|++|+.|..|+
T Consensus 255 tl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg---~~~~~~~~------~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG---GLKSTLTT------NKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcCCCceEeecccceEEEEEeecc---cceeeeec------CcceeEeecccccceeeecCCCCcee
Confidence 4567777888888888888999999999999998421 22333332 46688999999999999999999999
Q ss_pred EEEccccccCCCCcCC-CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeecccccCcEEEEEeecC
Q 048199 402 VFDFASVVNEPADVHC-PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEYEEHEKRAWSVDFSRT 479 (495)
Q Consensus 402 vwd~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~ 479 (495)
+||.+++ +... .....+|.+.|.++.|+|.+..+|+||++|+++++||+++.. ++..+.+|.+.|.++.|+
T Consensus 326 l~DPR~~-----~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-- 398 (423)
T KOG0313|consen 326 LWDPRTG-----DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-- 398 (423)
T ss_pred ecCCCCC-----CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--
Confidence 9999987 2122 223458999999999999989999999999999999999876 999999999999999998
Q ss_pred CCCeEEEeeCCCcEeC
Q 048199 480 EPSMLVSGSDDCKVLY 495 (495)
Q Consensus 480 ~g~~l~s~s~D~~v~l 495 (495)
++..|+|||.|.+|+|
T Consensus 399 ~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 399 EGGLIVSGGADNKLRI 414 (423)
T ss_pred CCceEEeccCcceEEE
Confidence 5779999999999985
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.7e-18 Score=160.43 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=118.5
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--C
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--P 412 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~ 412 (495)
..++..+++++.|.+..+|.+..-.+++...++. +|..+|.-|.|+||.++|++|+.|..+++||+.++... +
T Consensus 233 S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-----gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y 307 (519)
T KOG0293|consen 233 SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-----GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY 307 (519)
T ss_pred cCCCeeEeeccCCceEEEEEEecCcceeeeeeee-----cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence 4567778999999999999985434444445544 99999999999999999999999999999999886110 0
Q ss_pred CCc--C-------CC-------------ee--------------------------------------------------
Q 048199 413 ADV--H-------CP-------------VV-------------------------------------------------- 420 (495)
Q Consensus 413 ~~~--~-------~~-------------~~-------------------------------------------------- 420 (495)
... . +| ..
T Consensus 308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 000 0 00 00
Q ss_pred ---ecCCCCCeEEEEEcC--------------------------------------------CCCCEEEEecCCCcEEEE
Q 048199 421 ---EMPTRSKLSCLSWNK--------------------------------------------FSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 421 ---~~~~~~~i~~~~~~p--------------------------------------------~~~~~l~sg~~dg~v~iw 453 (495)
.+....+|+++..+. .+..+++||+.|+.|+||
T Consensus 388 dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIW 467 (519)
T KOG0293|consen 388 DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIW 467 (519)
T ss_pred hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEE
Confidence 000112223332222 224789999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+..+|.++..+.||...|++|+|+|.++.++||||+||+|||
T Consensus 468 hr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 468 HRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred EccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 999999999999999999999999999999999999999996
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.76 E-value=3e-18 Score=156.11 Aligned_cols=143 Identities=19% Similarity=0.254 Sum_probs=123.6
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
+.++-+.+|+.|.+++|||+. ......++. ||-..|+.++|++--.|+++++.|+.|+.||+...
T Consensus 161 P~n~wf~tgs~DrtikIwDla---tg~Lkltlt-----Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n------- 225 (460)
T KOG0285|consen 161 PGNEWFATGSADRTIKIWDLA---TGQLKLTLT-----GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN------- 225 (460)
T ss_pred CCceeEEecCCCceeEEEEcc---cCeEEEeec-----chhheeeeeeecccCceEEEecCCCeeEEEechhh-------
Confidence 345778999999999999984 223344444 89999999999999999999999999999999986
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.......+|-+.|.+++.+|. -..|++|+.|.+++|||+++...+..+.||..+|.+|.+.|.| ..++|||.|++|++
T Consensus 226 kvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrl 303 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRL 303 (460)
T ss_pred hhHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC-CceEEecCCceEEE
Confidence 122233478889999999999 8899999999999999999999999999999999999999955 47889999999985
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.8e-18 Score=147.91 Aligned_cols=147 Identities=14% Similarity=0.212 Sum_probs=126.5
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
+..+++++.|+.++||....++.......+.. +|+..|++++|+|.|++|++||.|.++-||.-..+ ....
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~----~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-----efec 97 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDD----GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-----EFEC 97 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccc----cchheeeeeeecCCCcEEEEeeccceEEEeecCCC-----ceeE
Confidence 44689999999999999875555555555554 79999999999999999999999999999987755 2223
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC---cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ---QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
....-+|...|-+++|+++ |++||+++.|.+|-||.+..+ .++..+++|+..|..+.|+| ...+|+|+|+|.+||
T Consensus 98 v~~lEGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIK 175 (312)
T ss_pred EeeeeccccceeEEEEcCC-CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEE
Confidence 3344589999999999999 999999999999999998743 57889999999999999999 888999999999998
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
+
T Consensus 176 ~ 176 (312)
T KOG0645|consen 176 V 176 (312)
T ss_pred E
Confidence 5
No 30
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.75 E-value=6e-18 Score=155.23 Aligned_cols=144 Identities=18% Similarity=0.311 Sum_probs=118.7
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPV 419 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 419 (495)
+.+|---+.+.+|.... + -|.+...-+.+|+..|-+|.|+|. ..+|+|||-|++|+|||++.+. ....+
T Consensus 227 LlsGDc~~~I~lw~~~~-g----~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~-----~~~~~ 296 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPST-G----SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP-----KKAAV 296 (440)
T ss_pred cccCccccceEeeeecc-C----ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC-----cccee
Confidence 55665556788887753 2 344444456689999999999994 5699999999999999999972 23445
Q ss_pred eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC---CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT---QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
....|.+.|+-|.|+.. ..+|++|+.||+++|||+++ +.++++|.-|..+|++|.|+|.+...|+++|.|..|.|
T Consensus 297 ~~kAh~sDVNVISWnr~-~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 297 STKAHNSDVNVISWNRR-EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred EeeccCCceeeEEccCC-cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 55678999999999998 66999999999999999985 68899999999999999999977788999999988864
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=1.2e-17 Score=165.48 Aligned_cols=145 Identities=17% Similarity=0.228 Sum_probs=123.0
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
.++++.+++|.+|+.|+||+..+ .-++.++. .|++.|+.+.|+..|+.++++|.||+||.||+... +.+
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~S---gfC~vTFt-----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNf-- 427 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQS---GFCFVTFT-----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNF-- 427 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccC---ceEEEEec-----cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-cee--
Confidence 35667889999999999999852 23466665 79999999999999999999999999999999886 111
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc-EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI-VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~-v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
........-...+++..|. |.++..|+.|.. |.||++.+|+.+-.+.||+++|.+++|+| ++..|+|||+|.+|
T Consensus 428 ---RTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 428 ---RTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTV 502 (893)
T ss_pred ---eeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceE
Confidence 1112223345789999999 899999999884 99999999999999999999999999999 99999999999999
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
|+
T Consensus 503 Ri 504 (893)
T KOG0291|consen 503 RI 504 (893)
T ss_pred EE
Confidence 86
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=5.7e-18 Score=167.43 Aligned_cols=151 Identities=16% Similarity=0.212 Sum_probs=126.4
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeec-cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRH-GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
...+.+++++.|.++++|++.+.........+.. .....|...|.+++++|+..+++|||.|++.+||++...
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~------ 495 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL------ 495 (775)
T ss_pred cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc------
Confidence 3457789999999999999865211111122211 111258999999999999999999999999999999965
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.-.....+|..+||++.|+|. ...++|+|.|++|+||.+.+..|+++|.||+..|..+.|-. +|..|+|++.||-||
T Consensus 496 -~l~~vLsGH~RGvw~V~Fs~~-dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliK 572 (775)
T KOG0319|consen 496 -RLLGVLSGHTRGVWCVSFSKN-DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIK 572 (775)
T ss_pred -eEEEEeeCCccceEEEEeccc-cceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEE
Confidence 233445589999999999999 88999999999999999999999999999999999999999 999999999999998
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
|
T Consensus 573 l 573 (775)
T KOG0319|consen 573 L 573 (775)
T ss_pred E
Confidence 5
No 33
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.73 E-value=3.3e-18 Score=153.85 Aligned_cols=151 Identities=18% Similarity=0.323 Sum_probs=128.5
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeec---cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRH---GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV 409 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~---~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~ 409 (495)
.+.+++..+++|+-|+.+.+|++.. ++ ...++++ ..+.-|..+|.++.|+.|...+++|+.||.|+||.+.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~-GK--lrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG- 295 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTT-GK--LRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG- 295 (508)
T ss_pred eeCCCCceEeeccccceeeeehhcc-ch--hhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc-
Confidence 4456788899999999999999853 22 2223332 234457899999999999999999999999999999998
Q ss_pred cCCCCcCCCe-eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 410 NEPADVHCPV-VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 410 ~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
.+.. ....|...|+++.|+.| +..+++++.|.+++|--+++|++++.|.||+..|+...|++ +|.+++|+|
T Consensus 296 ------~ClRrFdrAHtkGvt~l~FSrD-~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaS 367 (508)
T KOG0275|consen 296 ------QCLRRFDRAHTKGVTCLSFSRD-NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISAS 367 (508)
T ss_pred ------hHHHHhhhhhccCeeEEEEccC-cchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEec
Confidence 2221 22368889999999999 88999999999999999999999999999999999999999 999999999
Q ss_pred CCCcEeC
Q 048199 489 DDCKVLY 495 (495)
Q Consensus 489 ~D~~v~l 495 (495)
.||+||+
T Consensus 368 sDgtvkv 374 (508)
T KOG0275|consen 368 SDGTVKV 374 (508)
T ss_pred CCccEEE
Confidence 9999985
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.72 E-value=4e-17 Score=142.12 Aligned_cols=144 Identities=17% Similarity=0.240 Sum_probs=113.8
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..+...++.|.. -.|+|+|+..+. ..++.++. +|+..|.++.|+-+|+.++|||.||++||||++..
T Consensus 49 Tpdk~~LAaa~~-qhvRlyD~~S~n-p~Pv~t~e-----~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~------ 115 (311)
T KOG0315|consen 49 TPDKKDLAAAGN-QHVRLYDLNSNN-PNPVATFE-----GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL------ 115 (311)
T ss_pred cCCcchhhhccC-CeeEEEEccCCC-CCceeEEe-----ccCCceEEEEEeecCeEEEecCCCceEEEEeccCc------
Confidence 344444444433 368899986543 34777777 89999999999999999999999999999999985
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-----------------------------------
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ----------------------------------- 459 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~----------------------------------- 459 (495)
.....+.+.++|+++..||. ...|++|+.+|.|+|||+....
T Consensus 116 --~~qR~~~~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 116 --SCQRNYQHNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred --ccchhccCCCCcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence 33445567788888888888 7788888888888888875431
Q ss_pred --------------ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 460 --------------SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 460 --------------~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++..|..|++.+....++| ++++||++|.|.+|+|
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKI 241 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEE
Confidence 3344567889999999999 9999999999999986
No 35
>PTZ00420 coronin; Provisional
Probab=99.72 E-value=9e-17 Score=163.84 Aligned_cols=142 Identities=15% Similarity=0.283 Sum_probs=111.3
Q ss_pred chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCe-ee
Q 048199 344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPV-VE 421 (495)
Q Consensus 344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~ 421 (495)
|+.+..+.+|+..+ ...+..+. +|.+.|.+++|+|+ +++|+|||.|++|+|||+............++ ..
T Consensus 50 GG~~gvI~L~~~~r---~~~v~~L~-----gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L 121 (568)
T PTZ00420 50 GGLIGAIRLENQMR---KPPVIKLK-----GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL 121 (568)
T ss_pred CCceeEEEeeecCC---CceEEEEc-----CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence 55566778887643 23455555 89999999999996 78999999999999999986411110001122 23
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 422 MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 422 ~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+|...|.+++|+|++..+|++|+.|++|+|||++++..+..+. |...|.+++|++ +|.+|++++.|+.|+|
T Consensus 122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrI 193 (568)
T PTZ00420 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHI 193 (568)
T ss_pred ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEE
Confidence 46888999999999944567899999999999999998877775 667899999999 9999999999999875
No 36
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.2e-17 Score=144.19 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=121.7
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
..+.+++.|++++|||.. ....++..++ .|...|.++.|++ .+..++++|.|++||+|+...+ ..
T Consensus 74 ~~~~~a~GDGSLrl~d~~--~~s~Pi~~~k-----EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-------~S 139 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLT--MPSKPIHKFK-----EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-------NS 139 (311)
T ss_pred ceEEEEecCceEEEeccC--CCCcchhHHH-----hhhhheEEeccccccceeEEeeccCCceEeecCCCC-------cc
Confidence 445678889999999965 3344666666 7999999999998 5668889999999999999886 23
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.....+|.+-|+...|+|..+++|++++.||++++||++..-....+..|...|.+..|+..+.++|+||+-|+.||.
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 334557888999999999999999999999999999999755555599999999999999989999999999999974
No 37
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.71 E-value=3.6e-17 Score=150.32 Aligned_cols=156 Identities=21% Similarity=0.232 Sum_probs=125.6
Q ss_pred CCCccccccc-cccccCcccchhhHHhhhhhhhcc--cC--------------------ceEEEEeeccccccCCCcEEE
Q 048199 325 PHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRY--SR--------------------LRVIAELRHGDIFHSANIVSS 381 (495)
Q Consensus 325 ~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~--~~--------------------~~~~~~~~~~~~~~h~~~V~~ 381 (495)
+|...+.... ..+++.+.+|+.|.+++||....- +. -.++..+ .||+.+|.+
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-----~GHt~~Vs~ 265 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-----EGHTEPVSS 265 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-----cccccceee
Confidence 4443333333 567888999999999999993211 00 0122222 389999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC---
Q 048199 382 IEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ--- 458 (495)
Q Consensus 382 l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~--- 458 (495)
+.|++ ...++++|.|.+|+.||+.++ ...........+++++++|. ..+|++|+.|..+++||.+++
T Consensus 266 V~w~d-~~v~yS~SwDHTIk~WDletg--------~~~~~~~~~ksl~~i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 266 VVWSD-ATVIYSVSWDHTIKVWDLETG--------GLKSTLTTNKSLNCISYSPL-SKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred EEEcC-CCceEeecccceEEEEEeecc--------cceeeeecCcceeEeecccc-cceeeecCCCCceeecCCCCCCCc
Confidence 99998 678889999999999999998 34444556677999999998 899999999999999999975
Q ss_pred cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 459 QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 459 ~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
....+|.||.++|.++.|+|.+.++|+|||.|+++||
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence 3567899999999999999999999999999999985
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.2e-17 Score=158.41 Aligned_cols=144 Identities=19% Similarity=0.284 Sum_probs=125.5
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
..-+..|++|+.|+++.+ .....+..+. .|.+.|++|+.||...+++|+|.|-+||+||.+.. ..+
T Consensus 67 knWiv~GsDD~~IrVfny---nt~ekV~~Fe-----AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~------wa~ 132 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNY---NTGEKVKTFE-----AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE------WAC 132 (794)
T ss_pred cceEEEecCCceEEEEec---ccceeeEEee-----ccccceeeeeecCCCCeEEecCCccEEEEeeccCc------eee
Confidence 345788999999999987 4455577776 89999999999999999999999999999999986 233
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecC-CCCeEEEeeCCCcEeC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT-EPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~-~g~~l~s~s~D~~v~l 495 (495)
.....+|..-|.+++|+|.+.+.|+|++.|++|+||.+.+..+..++.||...|++|+|-+. |..+|+||++|.+|||
T Consensus 133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence 44455788889999999998999999999999999999999999999999999999999761 2349999999999986
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.71 E-value=8.4e-18 Score=152.60 Aligned_cols=144 Identities=16% Similarity=0.272 Sum_probs=104.7
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc--ccCCC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV--VNEPA 413 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~--~~~~~ 413 (495)
.+....++|+.|++++|||...+. .+.. +.||++.|.++.| +.+++++||.|.+|+|||++++ .+.+.
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~---c~~~-----L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLE---CLKI-----LTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred ecchhhhcccccCceEEeccccHH---HHHh-----hhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh
Confidence 356778899999999999975332 2222 3389999999998 5669999999999999999886 11111
Q ss_pred CcCCC----------------------------------eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199 414 DVHCP----------------------------------VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ 459 (495)
Q Consensus 414 ~~~~~----------------------------------~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~ 459 (495)
.+-.. ....+|...|+.+.|+ ..+|+|++.|.+|++|++.+++
T Consensus 275 hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 275 HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEecccee
Confidence 10000 0012566677777776 4588888888888888888888
Q ss_pred ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 460 SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 460 ~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++.++.||...|-++.+ +|.+++|||.|.+|+|
T Consensus 352 fvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 352 FVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRL 384 (499)
T ss_pred eehhhhcccccceehhc---cCeEEEecCCCceEEE
Confidence 88888888887777776 5678888888888774
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.71 E-value=8.4e-17 Score=153.56 Aligned_cols=138 Identities=20% Similarity=0.299 Sum_probs=115.0
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
-+.++|++|+++.++.-. .++...+++ .|...|.++.|+|||++|+|+|.||+|.+||=.++ ..
T Consensus 161 fRi~T~sdDn~v~ffeGP---PFKFk~s~r-----~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg--------e~ 224 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGP---PFKFKSSFR-----EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--------EK 224 (603)
T ss_pred eEEEeccCCCeEEEeeCC---Ceeeeeccc-----ccccceeeEEECCCCCeEEEecCCccEEEEcCCCc--------cE
Confidence 446789999998888753 233334444 68999999999999999999999999999998887 22
Q ss_pred ee----ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceee-------------------------------
Q 048199 419 VV----EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME------------------------------- 463 (495)
Q Consensus 419 ~~----~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~------------------------------- 463 (495)
+. ...|.+.|.+++|+|| +..|+|.+.|.+++|||+.+..++.+
T Consensus 225 vg~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred EEEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 22 3368899999999999 99999999999999999876554333
Q ss_pred ------------cccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 464 ------------YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 464 ------------~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+.||...|+++..++ ++.+|+|||+||.|.
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~ 345 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHIN 345 (603)
T ss_pred EecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEE
Confidence 368999999999999 999999999999874
No 41
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=7.8e-17 Score=152.65 Aligned_cols=141 Identities=23% Similarity=0.250 Sum_probs=120.9
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
+...+.+|+||..+++|++.. . ....++. +|++.|++.+|+| ++.+++|||.||+||+||++..
T Consensus 122 d~t~l~s~sDd~v~k~~d~s~--a-~v~~~l~-----~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~------- 186 (487)
T KOG0310|consen 122 DNTMLVSGSDDKVVKYWDLST--A-YVQAELS-----GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL------- 186 (487)
T ss_pred CCeEEEecCCCceEEEEEcCC--c-EEEEEec-----CCcceeEeeccccCCCeEEEecCCCceEEEEEeccC-------
Confidence 456789999999999999852 2 2234454 9999999999999 5679999999999999999986
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
...+..+.|..+|-.+.|-|. |.+|++++. ..|+|||+-+| +.+..+..|...|+|+++.. ++..|+|||-|+.||
T Consensus 187 ~~~v~elnhg~pVe~vl~lps-gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VK 263 (487)
T KOG0310|consen 187 TSRVVELNHGCPVESVLALPS-GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVK 263 (487)
T ss_pred CceeEEecCCCceeeEEEcCC-CCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceE
Confidence 367888899999999999999 889999874 58999999865 55566666999999999999 999999999999998
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
+
T Consensus 264 V 264 (487)
T KOG0310|consen 264 V 264 (487)
T ss_pred E
Confidence 5
No 42
>PTZ00421 coronin; Provisional
Probab=99.70 E-value=1.6e-16 Score=161.22 Aligned_cols=156 Identities=12% Similarity=0.140 Sum_probs=120.7
Q ss_pred CCCccccccccc--cccCcccchhhHHhhhhhhhcccC----ceEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCC
Q 048199 325 PHTKQESDKNII--HREGYNAGLADFQSVLTTFTRYSR----LRVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVS 397 (495)
Q Consensus 325 ~~~~~~~~~~~~--~~~~~~~g~~d~~~~lw~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d 397 (495)
+|...+....+. ++..+++|+.|++|++|++..... ..++..+. +|...|.+++|+|++ ++|++++.|
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-----gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-----GHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-----CCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 344444444443 356789999999999999853211 12334444 899999999999975 699999999
Q ss_pred CcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCc-EEEEE
Q 048199 398 RRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR-AWSVD 475 (495)
Q Consensus 398 ~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~ 475 (495)
++|+|||+.++ ..... ..|...|++++|+|+ +.+|++|+.||+|+|||++++..+..+.+|.+. +..+.
T Consensus 148 gtVrIWDl~tg--------~~~~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~ 218 (493)
T PTZ00421 148 MVVNVWDVERG--------KAVEVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL 218 (493)
T ss_pred CEEEEEECCCC--------eEEEEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence 99999999986 22233 357888999999999 999999999999999999999999999999764 44678
Q ss_pred eecCCCCeEEEee----CCCcEeC
Q 048199 476 FSRTEPSMLVSGS----DDCKVLY 495 (495)
Q Consensus 476 ~~~~~g~~l~s~s----~D~~v~l 495 (495)
|.+ ++..|++++ .|+.|+|
T Consensus 219 w~~-~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 219 WAK-RKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred EcC-CCCeEEEEecCCCCCCeEEE
Confidence 888 666776654 4677764
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.69 E-value=1.2e-16 Score=142.78 Aligned_cols=164 Identities=15% Similarity=0.172 Sum_probs=134.4
Q ss_pred cCCCCcccccc-ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 048199 323 NQPHTKQESDK-NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIK 401 (495)
Q Consensus 323 ~~~~~~~~~~~-~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~ 401 (495)
+.++.+.+... +.++++.+++|+.|..|.+|... ...+..+.++ +|.++|..+.|.+|++.++++|.|++|+
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~--gdceN~~~lk-----gHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVY--GDCENFWVLK-----GHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecc--ccccceeeec-----cccceeEeeeeccCCCEEEEecCCceEE
Confidence 34555555443 44678899999999999999853 6667788888 9999999999999999999999999999
Q ss_pred EEEccccccCCC--CcCCC---------------------------------eeecCCCCCeEEEEEcCCCCCEEEEecC
Q 048199 402 VFDFASVVNEPA--DVHCP---------------------------------VVEMPTRSKLSCLSWNKFSKNRIASSDY 446 (495)
Q Consensus 402 vwd~~~~~~~~~--~~~~~---------------------------------~~~~~~~~~i~~~~~~p~~~~~l~sg~~ 446 (495)
.||.+++....+ .+... +..+.....++++.|... +..+.+|+-
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~-s~qv~sggI 194 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDT-SDQVISGGI 194 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccc-ccceeeccc
Confidence 999998733221 11100 001122345789999988 889999999
Q ss_pred CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|+.|++||++.+..+..+.||.++|+.+..++ +|.++.|-+.|.+|++
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrv 242 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRV 242 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEE
Confidence 99999999999999999999999999999999 9999999999999875
No 44
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=138.16 Aligned_cols=150 Identities=14% Similarity=0.192 Sum_probs=116.5
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--C
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--P 412 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~ 412 (495)
..++.-+.+|++|++++|||+..- .....+.|.++|.++..||+..-|++|..+|.|+|||+...... +
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~---------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSL---------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCc---------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 345666789999999999998531 11112257789999999998888889999999999998764110 0
Q ss_pred ---------------------------------------CCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 413 ---------------------------------------ADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 413 ---------------------------------------~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.....|+..+ .|.+-+..+.++|| +.+|++++.|.+++|
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd-~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD-VKYLATCSSDKTVKI 241 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC-CcEEEeecCCceEEE
Confidence 0000111122 46677899999999 999999999999999
Q ss_pred EeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 453 WDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 453 wd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|++.+. ..-..+.+|..++|..+|+. ||.||+|||.|+.+|+
T Consensus 242 wn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARL 284 (311)
T ss_pred EecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceee
Confidence 999876 55577899999999999999 9999999999999875
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-16 Score=148.06 Aligned_cols=94 Identities=17% Similarity=0.351 Sum_probs=75.5
Q ss_pred cCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
+|...|++++|+|..+ ++..++.+.+|+|.|+++. ..+..+.....+|+++|.-+..++|+.|..+|.|.|
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------CVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccc--------eeeeheeccCCceeeeeccCCcceeEEeccCceEEE
Confidence 6788999999999777 7889999999999999996 555555556889999999998999999999999999
Q ss_pred EeCCCCc-ceeeccc--ccCcEEEEE
Q 048199 453 WDVTTQQ-SVMEYEE--HEKRAWSVD 475 (495)
Q Consensus 453 wd~~~~~-~~~~~~~--h~~~v~~v~ 475 (495)
||++..+ .+..+.+ ...+|..++
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~ 288 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIA 288 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeec
Confidence 9998643 3444443 234555444
No 46
>PTZ00420 coronin; Provisional
Probab=99.69 E-value=3e-16 Score=160.03 Aligned_cols=157 Identities=14% Similarity=0.172 Sum_probs=119.1
Q ss_pred CCCCcccccccccc--ccCcccchhhHHhhhhhhhcccCc-----eEEEEeeccccccCCCcEEEEEEccCCCE-EEEEe
Q 048199 324 QPHTKQESDKNIIH--REGYNAGLADFQSVLTTFTRYSRL-----RVIAELRHGDIFHSANIVSSIEFDRDDQL-FATAG 395 (495)
Q Consensus 324 ~~~~~~~~~~~~~~--~~~~~~g~~d~~~~lw~~~~~~~~-----~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-l~s~s 395 (495)
.+|...+.+..+.. +..+++|+.|++++||++...... .++..+. +|...|.+++|+|++.. |++++
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-----gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-----GHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-----cCCCcEEEEEECCCCCeEEEEEe
Confidence 34444444444432 467899999999999998532210 1222333 89999999999998875 57999
Q ss_pred CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEE--
Q 048199 396 VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWS-- 473 (495)
Q Consensus 396 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~-- 473 (495)
.|++|+|||+.++ .....+.+...|.+++|+|+ |.+|++++.|+.|+|||++++..+.++.+|.+.+.+
T Consensus 146 ~DgtIrIWDl~tg--------~~~~~i~~~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~ 216 (568)
T PTZ00420 146 FDSFVNIWDIENE--------KRAFQINMPKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKN 216 (568)
T ss_pred CCCeEEEEECCCC--------cEEEEEecCCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEE
Confidence 9999999999986 23334456678999999999 999999999999999999999999999999875433
Q ss_pred ---EEeecCCCCeEEEeeCCC----cEeC
Q 048199 474 ---VDFSRTEPSMLVSGSDDC----KVLY 495 (495)
Q Consensus 474 ---v~~~~~~g~~l~s~s~D~----~v~l 495 (495)
..|++ ++.+|+|++.|+ .|+|
T Consensus 217 v~~~~fs~-d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 217 IWIDGLGG-DDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred EEeeeEcC-CCCEEEEEEcCCCCccEEEE
Confidence 34557 888899888774 5654
No 47
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=4e-17 Score=162.26 Aligned_cols=144 Identities=11% Similarity=0.197 Sum_probs=121.4
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
..+++.+.-+.+.+|++.++.+...+..+. .|.-.|..+.||+ ..++|++||.||+||+||++.. ..
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-----EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-------~S 168 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFN-----EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-------KS 168 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhh-----hhccceeeeeeccCCccEEEecCCCceEEEEeeecc-------cc
Confidence 344555555688999997765544444444 7999999999998 5679999999999999999987 33
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
....++....|..|.|+|..+++|+++...|.+++||++. .++...|.+|.++|.++.|+| ++.+|||||.|++|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vki 246 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKI 246 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEE
Confidence 3444556678999999999899999999999999999986 578889999999999999999 9999999999999986
No 48
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.3e-16 Score=145.84 Aligned_cols=143 Identities=20% Similarity=0.259 Sum_probs=122.7
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC----------C-----CEEEEEeCCCcE
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD----------D-----QLFATAGVSRRI 400 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~----------~-----~~l~s~s~d~~i 400 (495)
.++..+++++.|.++.+|-+... .....++ .|..+|.+++|-|. + +++++++.|++|
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~---~~k~~lR-----~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATK---QCKAELR-----EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccc---hhhhhhh-----ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 45677889999999999987421 1223333 78889999998763 2 489999999999
Q ss_pred EEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCC
Q 048199 401 KVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE 480 (495)
Q Consensus 401 ~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 480 (495)
|+||+.++ .+.....+|...|..++|+|. |.||+|...|+++++||++++++..++..|+.-|++++|+. +
T Consensus 317 k~wdv~tg-------~cL~tL~ghdnwVr~~af~p~-Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~ 387 (406)
T KOG0295|consen 317 KIWDVSTG-------MCLFTLVGHDNWVRGVAFSPG-GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-T 387 (406)
T ss_pred EEEeccCC-------eEEEEEecccceeeeeEEcCC-CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-C
Confidence 99999998 556666789999999999999 99999999999999999999999999999999999999998 7
Q ss_pred CCeEEEeeCCCcEeC
Q 048199 481 PSMLVSGSDDCKVLY 495 (495)
Q Consensus 481 g~~l~s~s~D~~v~l 495 (495)
-.+++|||-|.++++
T Consensus 388 ~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 388 APYVVTGSVDQTVKV 402 (406)
T ss_pred CceEEeccccceeee
Confidence 779999999999875
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.67 E-value=4.2e-16 Score=135.79 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=119.7
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--C
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--P 412 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~ 412 (495)
..+...+.+|+.+..++|+++.+-. .+.. ++.+|.+.|+.+.|....+.|++++.|++||+||.+++... +
T Consensus 109 ~~ds~~lltgg~ekllrvfdln~p~--App~-----E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL 181 (334)
T KOG0278|consen 109 SQDSNYLLTGGQEKLLRVFDLNRPK--APPK-----EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL 181 (334)
T ss_pred cccchhhhccchHHHhhhhhccCCC--CCch-----hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence 3456678999999999999986322 2233 33499999999999998899999999999999999987211 0
Q ss_pred CC----------cCCCee--------------------ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee
Q 048199 413 AD----------VHCPVV--------------------EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM 462 (495)
Q Consensus 413 ~~----------~~~~~~--------------------~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~ 462 (495)
.. ...... .+.....|.+...+|+ ..++++|+.|+.++.||..+|..+.
T Consensus 182 ~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~-k~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 182 EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK-KEFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred ecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCC-CceEEecCcceEEEEEeccCCceee
Confidence 00 000000 1112234677889999 7899999999999999999999999
Q ss_pred ec-ccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 463 EY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 463 ~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+ .+|-++|.+|.|+| +|...++||.||+|+|
T Consensus 261 ~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 261 SYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRL 293 (334)
T ss_pred ecccCCCCceEEEEECC-CCceeeccCCCceEEE
Confidence 87 89999999999999 9999999999999986
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.67 E-value=1.1e-17 Score=151.94 Aligned_cols=108 Identities=21% Similarity=0.390 Sum_probs=96.1
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 373 FHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 373 ~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.||...|..+.| +.++++++|.|.+|++|++.+. ...-..-+|..+|-|+.+. +.+++||+.|.+|++
T Consensus 317 vGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~-------efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 317 VGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTC-------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRL 384 (499)
T ss_pred hhhhhheeeecc--ccceEEEecCCceEEEEeccce-------eeehhhhcccccceehhcc---CeEEEecCCCceEEE
Confidence 489999999999 5669999999999999999997 3333344688889899887 789999999999999
Q ss_pred EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
||+..|.++..++||+.-|.++.|. ...++||++||+|||
T Consensus 385 wdi~~G~cLRvLeGHEeLvRciRFd---~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 385 WDIECGACLRVLEGHEELVRCIRFD---NKRIVSGAYDGKIKV 424 (499)
T ss_pred EeccccHHHHHHhchHHhhhheeec---CceeeeccccceEEE
Confidence 9999999999999999999999994 489999999999985
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.67 E-value=3e-16 Score=148.50 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=135.4
Q ss_pred HHHHHhhhhccCCCCcccccccc-ccccCcccchhhHHhhhhhhhcc------------------------------cCc
Q 048199 313 CYLQKRRQMANQPHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRY------------------------------SRL 361 (495)
Q Consensus 313 ~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~------------------------------~~~ 361 (495)
.|-+.++..++.+|...+.+..+ ..+..+.+++.|+.+++||...- ++.
T Consensus 244 vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~k 323 (503)
T KOG0282|consen 244 VYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKK 323 (503)
T ss_pred EecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCc
Confidence 34445555566666655555444 46788899999999999996311 222
Q ss_pred eEEEEeeccccc----cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-----CCCcCCCee------------
Q 048199 362 RVIAELRHGDIF----HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-----PADVHCPVV------------ 420 (495)
Q Consensus 362 ~~~~~~~~~~~~----~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-----~~~~~~~~~------------ 420 (495)
...|+++.+++. .|.+.|.+|.|-++|..|++++.|++++||+.+.+... ...+..|..
T Consensus 324 i~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 324 IRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ 403 (503)
T ss_pred EEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence 345666666554 48899999999999999999999999999998775110 000011100
Q ss_pred -------ec---------------CCC--CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEe
Q 048199 421 -------EM---------------PTR--SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDF 476 (495)
Q Consensus 421 -------~~---------------~~~--~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~ 476 (495)
.+ +|. +--..+.|+|| |.+|++|+.||.+.+||.++...+..+.+|.++|..+.|
T Consensus 404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD-G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD-GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC-CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence 00 111 22457899999 999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEeeCCCcEeC
Q 048199 477 SRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 477 ~~~~g~~l~s~s~D~~v~l 495 (495)
+|.....+||+++||.|++
T Consensus 483 HP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 483 HPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred cCCCcceeEecccCceeEe
Confidence 9988899999999999986
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.2e-16 Score=160.84 Aligned_cols=138 Identities=16% Similarity=0.256 Sum_probs=119.4
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV 420 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 420 (495)
..++...+.+.+||+. ... .+. .|..|.++|+++.|||++.+|+|||.|.+|+||++... ++...
T Consensus 24 ILtslHsG~IQlWDYR-M~t--li~-----rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-------rclft 88 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYR-MGT--LID-----RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-------RCLFT 88 (1202)
T ss_pred EEEeecCceeeeehhh-hhh--HHh-----hhhccCCccceeeecCCCCeEEecCCccEEEEEecccc-------eehhh
Confidence 3444445589999984 111 111 23379999999999999999999999999999999987 45556
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 421 EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 421 ~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..+|-+-|..+.||+. ...|+|+|.|-+|+||+..++.++..+.||...|.|..|+| ....++|+|-|.+|||
T Consensus 89 L~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRV 161 (1202)
T ss_pred hccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEE
Confidence 6789999999999999 88999999999999999999999999999999999999999 8889999999999986
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.66 E-value=1.6e-16 Score=139.35 Aligned_cols=155 Identities=20% Similarity=0.236 Sum_probs=122.7
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccC
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
.+..++..+++|+.|.++.+|.+.+. ++..-.. ..+|++.|-.+.|+| +..+|++++.|++|++||++.++..
T Consensus 27 ~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~-----~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 27 AWNCDGTKLASGSFDKTVSVWNLERD-RFRKELV-----YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT 100 (313)
T ss_pred EEcccCceeeecccCCceEEEEecch-hhhhhhc-----ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence 44568899999999999999998542 2222222 238999999999998 6779999999999999998864210
Q ss_pred CC---------------C-----------------------------------------------------------cCC
Q 048199 412 PA---------------D-----------------------------------------------------------VHC 417 (495)
Q Consensus 412 ~~---------------~-----------------------------------------------------------~~~ 417 (495)
.. + ...
T Consensus 101 ~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk 180 (313)
T KOG1407|consen 101 ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK 180 (313)
T ss_pred EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence 00 0 000
Q ss_pred Ceeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|+..+ .|.....||.|+|+ |.+||+|+.|..+.+||+...-|++.|..+.-+|..+.|+. ||.+|||||.|..|-|
T Consensus 181 pv~si~AH~snCicI~f~p~-GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPD-GRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDI 257 (313)
T ss_pred cccccccCCcceEEEEECCC-CceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-CcceeeccCccceEEe
Confidence 11111 45566789999999 99999999999999999999999999999999999999999 9999999999988754
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3e-16 Score=158.03 Aligned_cols=146 Identities=18% Similarity=0.307 Sum_probs=124.1
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
.++.....+++|++|..+++|.+. .-+.+.++. ||.+.|+.+.||+.-..++|+|.|.|||||++.+.
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk---~rrclftL~-----GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr---- 125 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYK---TRRCLFTLL-----GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR---- 125 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecc---cceehhhhc-----cccceeEEeeccCCCceEEEccCCCeEEEEeccCC----
Confidence 344566789999999999999873 445666666 99999999999999999999999999999999997
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-----------------------------ceee
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-----------------------------SVME 463 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-----------------------------~~~~ 463 (495)
.+.....+|..-|.|..|||. ..+++|+|.|-+|+|||+.-.+ .-..
T Consensus 126 ---~~iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 126 ---KCIAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ---ceEEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 455566689999999999998 8899999999999999984210 1134
Q ss_pred cccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 464 YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 464 ~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+.||...|+.++|+| .-.+|+||++|+.||+
T Consensus 202 LEGHDRGVNwaAfhp-TlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHP-TLPLIVSGADDRQVKL 232 (1202)
T ss_pred ecccccccceEEecC-CcceEEecCCcceeeE
Confidence 578999999999999 7779999999999985
No 55
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.66 E-value=5e-16 Score=146.50 Aligned_cols=153 Identities=14% Similarity=0.172 Sum_probs=124.2
Q ss_pred CCCccccc-cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC---------CEEEEE
Q 048199 325 PHTKQESD-KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD---------QLFATA 394 (495)
Q Consensus 325 ~~~~~~~~-~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~---------~~l~s~ 394 (495)
+|...++. .+.+.+..+++.++|.+++||...+- .....+. .|+..|+.+.|+|+| ..++++
T Consensus 357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~-----~Hskei~t~~wsp~g~v~~n~~~~~~l~sa 428 (524)
T KOG0273|consen 357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQ-----AHSKEIYTIKWSPTGPVTSNPNMNLMLASA 428 (524)
T ss_pred cccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhh-----hhccceeeEeecCCCCccCCCcCCceEEEe
Confidence 34444443 33456788999999999999987432 2233333 899999999999964 379999
Q ss_pred eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEE
Q 048199 395 GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV 474 (495)
Q Consensus 395 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v 474 (495)
+.|.+|++||+..+ ......+.|..+|++++|+|+ +.++++|+.||.|.||++++++.++.+.+ .+.|..|
T Consensus 429 s~dstV~lwdv~~g-------v~i~~f~kH~~pVysvafS~~-g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel 499 (524)
T KOG0273|consen 429 SFDSTVKLWDVESG-------VPIHTLMKHQEPVYSVAFSPN-GRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFEL 499 (524)
T ss_pred ecCCeEEEEEccCC-------ceeEeeccCCCceEEEEecCC-CcEEEecCCCCeeEeccccchheeEeecC-CCeEEEE
Confidence 99999999999998 233334589999999999999 99999999999999999999999999986 4569999
Q ss_pred EeecCCCCeEEEeeCCCcEeC
Q 048199 475 DFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 475 ~~~~~~g~~l~s~s~D~~v~l 495 (495)
+|+. +|..|..+-.|+.|++
T Consensus 500 ~Wn~-~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 500 CWNA-AGDKLGACASDGSVCV 519 (524)
T ss_pred EEcC-CCCEEEEEecCCCceE
Confidence 9999 8898888888887763
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=3.4e-16 Score=157.70 Aligned_cols=119 Identities=22% Similarity=0.325 Sum_probs=100.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc------c----------------------c--------CCC----
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV------V----------------------N--------EPA---- 413 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~------~----------------------~--------~~~---- 413 (495)
.|.+.|+++.|++||+|||+||.|+.|+||.+... . . ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 69999999999999999999999999999998760 0 0 000
Q ss_pred ------------CcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCC
Q 048199 414 ------------DVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE 480 (495)
Q Consensus 414 ------------~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 480 (495)
-...|+. ..+|.+.|..+.|+.+ ++|+|++.|.||++|++....|+..|. |.+-|+||+|+|.|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 0001111 2378888999999975 599999999999999999999999997 99999999999999
Q ss_pred CCeEEEeeCCCcEeC
Q 048199 481 PSMLVSGSDDCKVLY 495 (495)
Q Consensus 481 g~~l~s~s~D~~v~l 495 (495)
.+|++|||-||+|||
T Consensus 422 DryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRL 436 (712)
T ss_pred CCcEeecccccceEE
Confidence 999999999999986
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.66 E-value=1.8e-16 Score=142.10 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=122.5
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeecc----------ccccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHG----------DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVF 403 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~----------~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vw 403 (495)
...+++.+++|+.|-+++|.+..+.-.......+..| .+..|...|.++.|||....|++|+.|++|++|
T Consensus 120 fs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlF 199 (430)
T KOG0640|consen 120 FSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLF 199 (430)
T ss_pred eCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEE
Confidence 3467788899999999999998644211111111111 344799999999999999999999999999999
Q ss_pred EccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec---ccccCcEEEEEeecCC
Q 048199 404 DFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY---EEHEKRAWSVDFSRTE 480 (495)
Q Consensus 404 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~~~~~ 480 (495)
|+... ..+.....+....+|.++.|||. |.+|+.|..-.++++||+++-++...- .+|++.|++|.+++ +
T Consensus 200 DfsK~-----saKrA~K~~qd~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t 272 (430)
T KOG0640|consen 200 DFSKT-----SAKRAFKVFQDTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-T 272 (430)
T ss_pred ecccH-----HHHHHHHHhhccceeeeEeecCC-CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-C
Confidence 99875 11112222344557999999999 999999999999999999998876554 46899999999999 9
Q ss_pred CCeEEEeeCCCcEeC
Q 048199 481 PSMLVSGSDDCKVLY 495 (495)
Q Consensus 481 g~~l~s~s~D~~v~l 495 (495)
|.+.++||.||.|||
T Consensus 273 ~~lYvTaSkDG~Ikl 287 (430)
T KOG0640|consen 273 GSLYVTASKDGAIKL 287 (430)
T ss_pred ccEEEEeccCCcEEe
Confidence 999999999999986
No 58
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.65 E-value=7.5e-16 Score=144.96 Aligned_cols=160 Identities=13% Similarity=0.212 Sum_probs=124.9
Q ss_pred CCCCccccccccc--cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcE
Q 048199 324 QPHTKQESDKNII--HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRI 400 (495)
Q Consensus 324 ~~~~~~~~~~~~~--~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i 400 (495)
..+...+++..+. ....+.+.++|..+.|||... ....+..... +|.+.|.+++|+| ++.+|||||.|++|
T Consensus 224 ~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~-~~~~~~~~~~-----ah~~~vn~~~fnp~~~~ilAT~S~D~tV 297 (422)
T KOG0264|consen 224 SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS-NTSKPSHSVK-----AHSAEVNCVAFNPFNEFILATGSADKTV 297 (422)
T ss_pred ecCCcceehhhccccchhhheeecCCCeEEEEEcCC-CCCCCccccc-----ccCCceeEEEeCCCCCceEEeccCCCcE
Confidence 3444444444432 456678888999999999864 2333333344 8999999999999 67789999999999
Q ss_pred EEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Cc-------------ceeeccc
Q 048199 401 KVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQ-------------SVMEYEE 466 (495)
Q Consensus 401 ~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~-------------~~~~~~~ 466 (495)
++||+++.. ..+....+|...|.+|.|+|....+|+|++.|+.+.|||+.. |. .+..-.|
T Consensus 298 ~LwDlRnL~------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 298 ALWDLRNLN------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG 371 (422)
T ss_pred EEeechhcc------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecC
Confidence 999999872 133444578899999999999999999999999999999864 21 2345568
Q ss_pred ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 467 HEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 467 h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|+..|..+.|+|..+-.|+|.+.|+.+.|
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCceEEE
Confidence 99999999999977778999999987754
No 59
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.65 E-value=5.4e-15 Score=137.47 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=65.3
Q ss_pred hhhhccCCCCccccccccccc-cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC
Q 048199 318 RRQMANQPHTKQESDKNIIHR-EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV 396 (495)
Q Consensus 318 r~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~ 396 (495)
+.......+.+..+...+..+ ..+.+|+.|..|++|+... .+...+.++. |..+.|+++.|++++.++++++.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~-~k~~~~~tLa-----Gs~g~it~~d~d~~~~~~iAas~ 239 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLG-EKSELISTLA-----GSLGNITSIDFDSDNKHVIAASN 239 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhccc-chhhhhhhhh-----ccCCCcceeeecCCCceEEeecC
Confidence 333344556666777777665 8899999999999999742 2223333333 67889999999999999999999
Q ss_pred CCcEEEEEcccc
Q 048199 397 SRRIKVFDFASV 408 (495)
Q Consensus 397 d~~i~vwd~~~~ 408 (495)
|+.+++|+++..
T Consensus 240 d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 240 DKNLRLWNVDSL 251 (459)
T ss_pred CCceeeeeccch
Confidence 999999999875
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=1.8e-15 Score=130.78 Aligned_cols=154 Identities=16% Similarity=0.239 Sum_probs=126.1
Q ss_pred ccCCCCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 048199 322 ANQPHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRI 400 (495)
Q Consensus 322 ~~~~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i 400 (495)
.|.++...+.+.. ..+++.+.+++.|..+.+||+. ..+.+..++ +|.+.|..+.|+.+...+++||.|.++
T Consensus 54 tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~---TGkv~Rr~r-----gH~aqVNtV~fNeesSVv~SgsfD~s~ 125 (307)
T KOG0316|consen 54 TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN---TGKVDRRFR-----GHLAQVNTVRFNEESSVVASGSFDSSV 125 (307)
T ss_pred eecCCCceeeeccccccccccccCCCCceEEEEEcc---cCeeeeecc-----cccceeeEEEecCcceEEEecccccee
Confidence 3455555555544 3467889999999999999983 344555555 899999999999999999999999999
Q ss_pred EEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecC
Q 048199 401 KVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT 479 (495)
Q Consensus 401 ~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 479 (495)
++||.++.- ..|+..+ .....|.++..+ +..|++|+.||+++.||++.|+....+-+| +|++++|++
T Consensus 126 r~wDCRS~s------~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~- 193 (307)
T KOG0316|consen 126 RLWDCRSRS------FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK- 193 (307)
T ss_pred EEEEcccCC------CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecC-
Confidence 999999861 2344433 355679999998 779999999999999999999988877766 799999999
Q ss_pred CCCeEEEeeCCCcEeC
Q 048199 480 EPSMLVSGSDDCKVLY 495 (495)
Q Consensus 480 ~g~~l~s~s~D~~v~l 495 (495)
+++..+.++.|+++++
T Consensus 194 d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 194 DGNCSLASSLDSTLRL 209 (307)
T ss_pred CCCEEEEeeccceeee
Confidence 9999999999999985
No 61
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.64 E-value=3.8e-16 Score=144.24 Aligned_cols=122 Identities=18% Similarity=0.318 Sum_probs=105.8
Q ss_pred cccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199 372 IFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV 450 (495)
Q Consensus 372 ~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v 450 (495)
+.||++.|.+++|+| +.+.+||||.|.+|+||++..+.-........+...+|..+|.-+.|||.-.+.|+|++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 348999999999999 6779999999999999999776222111122344558889999999999988999999999999
Q ss_pred EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.|||+.+|+.+-++. |.+-|++++|+. ||.+|+|++.|..|||
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv 199 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRV 199 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEE
Confidence 999999999999988 999999999999 9999999999999986
No 62
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.64 E-value=1.8e-15 Score=135.27 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=103.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
||.+.|+.+.|+|+|.+|+|||.|..|.+|++.... .......+|.+.|..+.|.+| ++.|+|++.|.+|+.|
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------ENFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRGW 117 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccc------cceeeeccccceeEeeeeccC-CCEEEEecCCceEEEE
Confidence 899999999999999999999999999999976641 123334489999999999999 9999999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|+++|+.+..+.+|.+-|++++-+..+..++.||++|+++||
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl 159 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKL 159 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEE
Confidence 999999999999999999999876656788999999999985
No 63
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=5e-16 Score=151.78 Aligned_cols=151 Identities=16% Similarity=0.243 Sum_probs=123.6
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEE-ccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEF-DRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.+..+.+.+.|++|++|+...-. .....+++ .|.+.|.++++ -++..++||||.|+.|.+||+.++...+...
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir-----~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s 157 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDN-TFCMSTIR-----THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS 157 (735)
T ss_pred CCCceEEecCCceEEEeecccCc-chhHhhhh-----cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh
Confidence 34578999999999999985432 12233333 79999999999 7889999999999999999999873211110
Q ss_pred CC--Cee--ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 416 HC--PVV--EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 416 ~~--~~~--~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
.. ++. ..++...|++++-++. +..|++|+..+.+++||-+++..+..+.||++.|..+-.+. ||..++|+|.||
T Consensus 158 ~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDg 235 (735)
T KOG0308|consen 158 FNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDG 235 (735)
T ss_pred ccccccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCc
Confidence 00 111 1157778999999999 89999999999999999999999999999999999999999 999999999999
Q ss_pred cEeC
Q 048199 492 KVLY 495 (495)
Q Consensus 492 ~v~l 495 (495)
+|+|
T Consensus 236 tIrl 239 (735)
T KOG0308|consen 236 TIRL 239 (735)
T ss_pred eEEe
Confidence 9986
No 64
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=1.4e-15 Score=153.21 Aligned_cols=154 Identities=15% Similarity=0.230 Sum_probs=126.3
Q ss_pred CCCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEE
Q 048199 324 QPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKV 402 (495)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~v 402 (495)
.+|...+.+..+.....+.+.+-|.+|+||++.+ ...+..+ .|.+.|+||+|+| |.+||++|+.|++|||
T Consensus 366 ~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~---~~CL~~F------~HndfVTcVaFnPvDDryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 366 KGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGR---KECLKVF------SHNDFVTCVAFNPVDDRYFISGSLDGKVRL 436 (712)
T ss_pred hccchhheecccccCCeeEeccccccEEeecCCC---cceeeEE------ecCCeeEEEEecccCCCcEeecccccceEE
Confidence 4566777778888888899999999999999953 2344444 5899999999999 8899999999999999
Q ss_pred EEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc--c------cCcEEEE
Q 048199 403 FDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--H------EKRAWSV 474 (495)
Q Consensus 403 wd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--h------~~~v~~v 474 (495)
|++... ..+.......-|++++|.|| |.+.+.|+.+|.+++|++...+....+.- | ...|+++
T Consensus 437 WsI~d~--------~Vv~W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~ 507 (712)
T KOG0283|consen 437 WSISDK--------KVVDWNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL 507 (712)
T ss_pred eecCcC--------eeEeehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence 999875 44444555678999999999 99999999999999999987665544421 1 2289999
Q ss_pred EeecCCCCeEEEeeCCCcEeC
Q 048199 475 DFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 475 ~~~~~~g~~l~s~s~D~~v~l 495 (495)
.|.|.+...++..|.|..|||
T Consensus 508 Q~~p~~~~~vLVTSnDSrIRI 528 (712)
T KOG0283|consen 508 QFFPGDPDEVLVTSNDSRIRI 528 (712)
T ss_pred EecCCCCCeEEEecCCCceEE
Confidence 999877777888889999986
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.63 E-value=2.2e-16 Score=142.20 Aligned_cols=119 Identities=23% Similarity=0.362 Sum_probs=102.9
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc--cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV--NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
+..+.+.+..|+|||++|++|+.||-|.+||+.+++ ++++ .......+-+...|.|++|+.| ...+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-YQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-YQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-hhhhcceeecccceEEEeeccc-HHHhhccCcCCcEE
Confidence 456778899999999999999999999999999871 1111 1122334457788999999999 88999999999999
Q ss_pred EEeCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 452 VWDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 452 iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
||.+.+|.|+..|. .|+..|+++.|+. |+..+.|+|.|.+|||
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRI 332 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEE
Confidence 99999999999998 8999999999999 9999999999999986
No 66
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1.7e-15 Score=150.38 Aligned_cols=151 Identities=16% Similarity=0.265 Sum_probs=124.7
Q ss_pred ccccCcccchhhHHhhhhhhhcccCc--------------------------------eEEEEeeccccc----cCCCcE
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRL--------------------------------RVIAELRHGDIF----HSANIV 379 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~--------------------------------~~~~~~~~~~~~----~h~~~V 379 (495)
..+..+.+.+-|++|+.||+.+|..+ ..+|.+++|.++ ||.++|
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV 481 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence 44556677888899999999888332 245777887654 899999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199 380 SSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ 459 (495)
Q Consensus 380 ~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~ 459 (495)
.+++|+|+++.|+++|.|+|||+||+-.. ...+..+.+.+.+..++|+|+ |.-|+.+..||.|.+||+..+.
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s-------~~~vEtl~i~sdvl~vsfrPd-G~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSS-------SGTVETLEIRSDVLAVSFRPD-GKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeecc-------CceeeeEeeccceeEEEEcCC-CCeEEEEEecceEEEEEhhhce
Confidence 99999999999999999999999999765 345666677788999999999 9999999999999999998766
Q ss_pred ceeeccc--------------------ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 460 SVMEYEE--------------------HEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 460 ~~~~~~~--------------------h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+.++.| .....+.+++++ ||..|++|+....|+|
T Consensus 554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCi 608 (893)
T KOG0291|consen 554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICI 608 (893)
T ss_pred eeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEE
Confidence 5544432 235789999999 9999999999888764
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.63 E-value=4.2e-16 Score=148.41 Aligned_cols=119 Identities=16% Similarity=0.239 Sum_probs=92.9
Q ss_pred cCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
||...+++.+|||. .+.|+|++.|+++||||+...+..+.... +...-+..-.+..++|++| +..||+|+.||+|++
T Consensus 266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik-~k~~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK-TKPAGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQI 343 (641)
T ss_pred CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe-eccCCCcccCceeeecCCC-cchhhhcccCCceee
Confidence 79999999999994 56899999999999999998733221111 1111123346899999999 889999999999999
Q ss_pred EeCCCCc---ceeecccccC--cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 453 WDVTTQQ---SVMEYEEHEK--RAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 453 wd~~~~~---~~~~~~~h~~--~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
||..+.. ....-.+|.. .|++|.|++ +|++|+|-|.|+++||
T Consensus 344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKV 390 (641)
T ss_pred eecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceee
Confidence 9976432 2233356866 899999999 9999999999999885
No 68
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.63 E-value=1.2e-15 Score=139.33 Aligned_cols=113 Identities=20% Similarity=0.327 Sum_probs=104.9
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
+|.+.|+++++.|.+++|+||+.|++|+|||+.++ .......+|-..+..+++++. ..|+++++.|+.|+.|
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-------~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-------QLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKCW 220 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccC-------eEEEeecchhheeeeeeeccc-CceEEEecCCCeeEEE
Confidence 89999999999999999999999999999999998 334445578889999999998 7899999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|+...+.+..+.||-..|++++.+| .-..|+||+.|.++||
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~Rv 261 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRV 261 (460)
T ss_pred echhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEE
Confidence 9999999999999999999999999 7789999999999885
No 69
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=1.8e-15 Score=141.85 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=124.0
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
...+++|+.|.+|++||+ +...+...+. +|.+.|.++.|+| ...+|++||.|++|+++|.+.. .
T Consensus 256 ~nVLaSgsaD~TV~lWD~---~~g~p~~s~~-----~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~-------~ 320 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDV---DTGKPKSSIT-----HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP-------S 320 (463)
T ss_pred ceeEEecCCCceEEEEEc---CCCCcceehh-----hcCCceeEEEecCCCceEEEeccccceEEeeeccCc-------c
Confidence 456889999999999999 4455566666 7899999999999 6779999999999999999964 2
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..-..+...+.|-.++|+|.+...++++..||+|+-+|+|+ +.++.++..|.+.|.+++++...+++|+|+|.|+.|++
T Consensus 321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKL 400 (463)
T ss_pred ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEE
Confidence 33344456678999999999889999999999999999997 58999999999999999999878899999999999985
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.62 E-value=4.3e-15 Score=162.02 Aligned_cols=140 Identities=18% Similarity=0.265 Sum_probs=116.1
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
...+++|+.|+++++|++.. ...+..+. +|.+.|++++|+| ++.+|++|+.|++|++||+.++
T Consensus 545 ~~~las~~~Dg~v~lWd~~~---~~~~~~~~-----~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-------- 608 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVAR---SQLVTEMK-----EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-------- 608 (793)
T ss_pred CCEEEEEeCCCeEEEEECCC---CeEEEEec-----CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC--------
Confidence 34577888899999999843 23344444 8999999999997 7899999999999999999876
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..+..+.+...+.++.|++.++.+|++|+.||.|++||++++. .+..+.+|...|+++.|. ++.+|+|+|.|++|+|
T Consensus 609 ~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~iki 686 (793)
T PLN00181 609 VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKL 686 (793)
T ss_pred cEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEE
Confidence 2333444556799999976558999999999999999998765 577888999999999996 5789999999999985
No 71
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.4e-16 Score=154.66 Aligned_cols=140 Identities=19% Similarity=0.293 Sum_probs=123.4
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
..+.+|+.|..+.||.+... ..+..+. +|.++|.+|.|++...+|++|+.+|+||+||+... +..
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp---~~i~S~~-----~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA-------k~v 105 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKP---NAITSLT-----GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA-------KIV 105 (825)
T ss_pred eeeccCCCceeeccccccCC---chhheee-----ccCCcceeeecCcchhhhcccccCCceeeeehhhh-------hhh
Confidence 45678999999999998543 3333333 89999999999999999999999999999999987 233
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
...++|...+.++.|||. +.++++|+.|+.+++||++...|...+.+|...|..+.|+| +|.++++|++|.+|+|
T Consensus 106 rtLtgh~~~~~sv~f~P~-~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki 180 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPY-GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKI 180 (825)
T ss_pred hhhhccccCcceeeeccc-eEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeee
Confidence 355688889999999999 89999999999999999999999999999999999999999 9999999999999986
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.62 E-value=7.3e-16 Score=138.21 Aligned_cols=151 Identities=15% Similarity=0.230 Sum_probs=121.8
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
.+.+....+.+|+.|++++++|+.+..-.+... .+.-..+|++|+|||.|.+|+.|....++++||+.+.....
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFK------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHH------HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence 445566778999999999999996432222111 22346789999999999999999999999999999861111
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc-ccc-CcEEEEEeecCCCCeEEEeeCC
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-EHE-KRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-~h~-~~v~~v~~~~~~g~~l~s~s~D 490 (495)
...-..+|.+.|+++.+++. +.+.++|+.||.|+|||--+++|+.+|. .|. ..|.+..|.. ||.+++|.+.|
T Consensus 253 ----sanPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~D 326 (430)
T KOG0640|consen 253 ----SANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKD 326 (430)
T ss_pred ----ecCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCc
Confidence 11123468889999999999 9999999999999999998999999986 464 4789999999 99999999999
Q ss_pred CcEeC
Q 048199 491 CKVLY 495 (495)
Q Consensus 491 ~~v~l 495 (495)
..||+
T Consensus 327 S~vkL 331 (430)
T KOG0640|consen 327 STVKL 331 (430)
T ss_pred ceeee
Confidence 99985
No 73
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=4.5e-15 Score=128.38 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=102.4
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
.|.++|+.+.|+-+|+|.+++|.|++||+|+...+ .......+|...|..++.+.| ...|++|+.|..|.+|
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVW 86 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeecccccc-ccccccCCCCceEEEE
Confidence 68899999999999999999999999999999887 222233467778999999988 8899999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|+.+|+.+..|.+|...|+.|.|+. +...++|||.|.+|++
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~ 127 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRL 127 (307)
T ss_pred EcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEE
Confidence 9999999999999999999999999 8999999999999874
No 74
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=3.9e-15 Score=147.78 Aligned_cols=155 Identities=15% Similarity=0.208 Sum_probs=131.6
Q ss_pred cccccccccCcccchhhHHhhhhhhhcccC----ceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 048199 331 SDKNIIHREGYNAGLADFQSVLTTFTRYSR----LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFA 406 (495)
Q Consensus 331 ~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~ 406 (495)
.....+++.++++|+.|.+|++|++.-... ...+..+.+...+.-...|.+++++|||.+|+.+-.|.+|+||-++
T Consensus 459 si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 459 SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 334557788999999999999999842211 1122333332333346789999999999999999999999999999
Q ss_pred ccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199 407 SVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS 486 (495)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s 486 (495)
+. +..+..++|.=+|.|++++|| +..++||+.|..|+||-+.-|.|-++|.+|.+.|.+|.|-| ....+.|
T Consensus 539 tl-------KFflsLYGHkLPV~smDIS~D-SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt 609 (888)
T KOG0306|consen 539 TL-------KFFLSLYGHKLPVLSMDISPD-SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFT 609 (888)
T ss_pred ce-------eeeeeecccccceeEEeccCC-cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEE
Confidence 87 566777899999999999999 99999999999999999999999999999999999999999 8899999
Q ss_pred eeCCCcEe
Q 048199 487 GSDDCKVL 494 (495)
Q Consensus 487 ~s~D~~v~ 494 (495)
+|.|+.||
T Consensus 610 ~gKD~kvK 617 (888)
T KOG0306|consen 610 CGKDGKVK 617 (888)
T ss_pred ecCcceEE
Confidence 99999987
No 75
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.61 E-value=3.5e-16 Score=112.76 Aligned_cols=62 Identities=26% Similarity=0.565 Sum_probs=57.7
Q ss_pred ccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHH
Q 048199 52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKK 113 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~ 113 (495)
++.||||++.+++|++++|||+||+.||.+|+.....||.|+++++.+++.+|..+.+.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 47899999999999999999999999999999988899999999999999999998887763
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.60 E-value=3e-15 Score=154.75 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=125.9
Q ss_pred cccccCcccch--hhHHhhhhhhhcccCceEEEEe--ec--cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccc-
Q 048199 335 IIHREGYNAGL--ADFQSVLTTFTRYSRLRVIAEL--RH--GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS- 407 (495)
Q Consensus 335 ~~~~~~~~~g~--~d~~~~lw~~~~~~~~~~~~~~--~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~- 407 (495)
..++..+++|+ .|..+.||......+....... .. ..+..|.+.|.|+.|+|||.+||+||.|+.|.||....
T Consensus 22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~ 101 (942)
T KOG0973|consen 22 HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI 101 (942)
T ss_pred cCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc
Confidence 45677888888 7888889986543221111111 10 12227999999999999999999999999999999884
Q ss_pred c----------ccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEee
Q 048199 408 V----------VNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS 477 (495)
Q Consensus 408 ~----------~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~ 477 (495)
+ .......+......+|.+.|..++|+|+ +.+|++++.|++|.|||.++...+..+.+|.+.|.++.|.
T Consensus 102 ~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~D 180 (942)
T KOG0973|consen 102 GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWD 180 (942)
T ss_pred CCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccceEEEEccccceeeeeeecccccccceEEC
Confidence 1 1111112223344579999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEeeCCCcEeC
Q 048199 478 RTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 478 ~~~g~~l~s~s~D~~v~l 495 (495)
| -|.||||-++|++|+|
T Consensus 181 P-~Gky~ASqsdDrtikv 197 (942)
T KOG0973|consen 181 P-IGKYFASQSDDRTLKV 197 (942)
T ss_pred C-ccCeeeeecCCceEEE
Confidence 9 9999999999999985
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.59 E-value=7.8e-15 Score=149.22 Aligned_cols=135 Identities=21% Similarity=0.319 Sum_probs=117.5
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
+..+.+|+.|.++++||. ........+. +|.+.|+++.. .+.++++||.|.+|++|++.++ .
T Consensus 261 ~~~lvsgS~D~t~rvWd~---~sg~C~~~l~-----gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~--------~ 322 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDC---STGECTHSLQ-----GHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNG--------A 322 (537)
T ss_pred CCEEEEEecCCcEEeEec---CCCcEEEEec-----CCCceEEEEEc--cCceEeeccCCceEEEEeccCc--------c
Confidence 566889999999999996 4456677776 89999999988 4557888999999999999987 4
Q ss_pred CeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+..+. |.+.|+++..+ +.++++|++||+|+|||+.+++++.++.+|..+|+++.+.. . .++++||.|++|++
T Consensus 323 ~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKV 396 (537)
T ss_pred eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEe
Confidence 444444 99999999998 67999999999999999999999999999999999998855 3 89999999999985
No 78
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.59 E-value=1.2e-14 Score=133.16 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=120.8
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
+....++|+.|....||++..- ..+..+. +|...|+++.|+.+|.+||||+.+|.|+||...++ .
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~g---e~~~elt-----gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg-------~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTG---EFAGELT-----GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG-------G 139 (399)
T ss_pred CCceEEecCCCceEEEEEccCC---cceeEec-----CCCCceEEEEEccCceEEEecCCCccEEEEEcccC-------c
Confidence 4566789999999999998532 2344444 99999999999999999999999999999999997 1
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
........-..|-=+.|||. +.+|+.|+.||.|-+|.+.++...+.+.||..++++=.|.| +|+.++++..||+|++
T Consensus 140 ~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 140 EQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIV 216 (399)
T ss_pred eEEEeecccCceEEEEeccc-ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCceEEE
Confidence 11122234456788999998 99999999999999999999888999999999999999999 9999999999999974
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.3e-14 Score=142.65 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=122.4
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEe--CCCcEEEEEccccc
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAG--VSRRIKVFDFASVV 409 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s--~d~~i~vwd~~~~~ 409 (495)
.+..++..+++|+.|+.+.|||.. ...++..+. .|++.|.+++|+| ...+||+|+ .|++|++||+.++
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~---~~~p~~~~~-----~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g- 378 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGL---SPEPKFTFT-----EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG- 378 (484)
T ss_pred EECCCCCeeccCCCccceEeccCC---CccccEEEe-----ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-
Confidence 445677889999999999999982 334455555 8999999999999 677999865 5999999999987
Q ss_pred cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEE-ecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 410 NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIAS-SDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~s-g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
..+......+.|.++.|++....++.+ |-.+..|.||+..+...+..+.+|..+|..++++| ||..+++|+
T Consensus 379 -------~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a 450 (484)
T KOG0305|consen 379 -------ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGA 450 (484)
T ss_pred -------cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEec
Confidence 555666778899999999994444444 44566899999999999999999999999999999 999999999
Q ss_pred CCCcEeC
Q 048199 489 DDCKVLY 495 (495)
Q Consensus 489 ~D~~v~l 495 (495)
.|.++++
T Consensus 451 ~DETlrf 457 (484)
T KOG0305|consen 451 ADETLRF 457 (484)
T ss_pred ccCcEEe
Confidence 9999985
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=5.5e-15 Score=146.72 Aligned_cols=143 Identities=15% Similarity=0.263 Sum_probs=124.2
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
+++..++.|.-|++|++|-+ +.++.... ++||.-+|.++..+||+++++|||.|++|+||-++-|
T Consensus 518 pdgk~LaVsLLdnTVkVyfl---DtlKFfls-----LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG------- 582 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFL---DTLKFFLS-----LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG------- 582 (888)
T ss_pred CCCcEEEEEeccCeEEEEEe---cceeeeee-----ecccccceeEEeccCCcCeEEeccCCCceEEeccccc-------
Confidence 34555677777888888765 33332333 3499999999999999999999999999999999987
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+-...++|.+.|.++.|-|. ...|++++.|+.|+-||-.+-..++.+.+|...||+++.+| +|.+++|+|.|..|++
T Consensus 583 DCHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 583 DCHKSFFAHDDSVMSVQFLPK-THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRL 660 (888)
T ss_pred hhhhhhhcccCceeEEEEccc-ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEe
Confidence 455566789999999999998 88999999999999999999999999999999999999999 9999999999999985
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=1.6e-14 Score=129.46 Aligned_cols=113 Identities=15% Similarity=0.330 Sum_probs=95.9
Q ss_pred CCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 375 SANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 375 h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
-.+.|.+|+|+| ...+++.+|.|++||+|++... +...+.....|.++|.+++|+.| |..+++|+.|+.+++|
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-----g~~~~ka~~~~~~PvL~v~Wsdd-gskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-----GQLVPKAQQSHDGPVLDVCWSDD-GSKVFSGGCDKQAKLW 99 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecC-----CcccchhhhccCCCeEEEEEccC-CceEEeeccCCceEEE
Confidence 467899999999 5667779999999999999874 11233445578899999999999 8999999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCC--eEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPS--MLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~--~l~s~s~D~~v~l 495 (495)
|+.++ .+..+..|.++|.++.|-+ ... .|+|||+|.+||.
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKf 141 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKF 141 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEec-CCCcceeEecccccceee
Confidence 99998 5677788999999999987 444 7899999999984
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.57 E-value=8e-15 Score=129.15 Aligned_cols=112 Identities=17% Similarity=0.163 Sum_probs=96.5
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
+.+.++..-|.|-++.+++|..||.|.+||++++. ..+.. ..|...|+.+.+++| ..+|++|+.|.+-++|
T Consensus 146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-------~~v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-------ELVDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLV 217 (327)
T ss_pred CccceeeeeecccCCEEEEecCCCcEEEEEcccCc-------eeeechhhhccccccccccCC-cceEEecccCccceee
Confidence 56788888999999999999999999999999972 11221 247779999999999 9999999999999999
Q ss_pred eCCCCcceeec-------------------------------------------------------ccccCcEEEEEeec
Q 048199 454 DVTTQQSVMEY-------------------------------------------------------EEHEKRAWSVDFSR 478 (495)
Q Consensus 454 d~~~~~~~~~~-------------------------------------------------------~~h~~~v~~v~~~~ 478 (495)
|+++.+.++++ +||-++|++|+|+|
T Consensus 218 D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 218 DVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred eccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence 98876554444 57999999999999
Q ss_pred CCCCeEEEeeCCCcEeC
Q 048199 479 TEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 479 ~~g~~l~s~s~D~~v~l 495 (495)
+|...+||+.||.|||
T Consensus 298 -dGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 298 -DGKSYSSGGEDGYVRL 313 (327)
T ss_pred -CCcccccCCCCceEEE
Confidence 9999999999999985
No 83
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.57 E-value=2.1e-15 Score=111.10 Aligned_cols=67 Identities=22% Similarity=0.431 Sum_probs=57.1
Q ss_pred CCccccccccchhhhccccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
.+.|.||||+++++|||+++|||+|++.||++|+.. ...||.|+++++..+|.+|..+...|+.+..
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCA 69 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHH
Confidence 467999999999999999999999999999999998 6899999999999999999999999998865
No 84
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=1.1e-14 Score=129.88 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=122.7
Q ss_pred ccccCcccchhhHHhhhhhhhcccCce---EEEEeec----cccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLR---VIAELRH----GDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFAS 407 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~---~~~~~~~----~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~ 407 (495)
..+..+.+|..|+.+.+||+.+....+ .+..-.. ..-.+|.-.|.++.|-| |.-.|.++|.|+++||||+.+
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence 345567899999999999987654221 1111111 11126899999999999 556888999999999999998
Q ss_pred cccCCCCcCCCeeecCCCCCeEEEEEcCCC--CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE
Q 048199 408 VVNEPADVHCPVVEMPTRSKLSCLSWNKFS--KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV 485 (495)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~ 485 (495)
. .....+...+.|++-+|+|-. -.+|++|..|-.|++.|+.+|.+..++.||.+.|.+|.|+|.....|+
T Consensus 134 l--------Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLa 205 (397)
T KOG4283|consen 134 L--------QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLA 205 (397)
T ss_pred c--------eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEE
Confidence 6 556667778889999999862 347888988999999999999999999999999999999997778899
Q ss_pred EeeCCCcEeC
Q 048199 486 SGSDDCKVLY 495 (495)
Q Consensus 486 s~s~D~~v~l 495 (495)
|||.||.||+
T Consensus 206 tgsaDg~irl 215 (397)
T KOG4283|consen 206 TGSADGAIRL 215 (397)
T ss_pred ecCCCceEEE
Confidence 9999999985
No 85
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.56 E-value=2.7e-14 Score=125.81 Aligned_cols=153 Identities=17% Similarity=0.242 Sum_probs=120.6
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
.-.-++..+.+...|.+..+|-.. ..+.+.+.. ||++.|+++..+-+...++||+.|.++++||+.+++...
T Consensus 17 KyN~eGDLlFscaKD~~~~vw~s~---nGerlGty~-----GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 17 KYNREGDLLFSCAKDSTPTVWYSL---NGERLGTYD-----GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred EecCCCcEEEEecCCCCceEEEec---CCceeeeec-----CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence 334567778888888888898652 234454444 999999999999999999999999999999999872210
Q ss_pred C--------------C-------------------------------cCCCeeec-CCCCCeEEEEEcCCCCCEEEEecC
Q 048199 413 A--------------D-------------------------------VHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDY 446 (495)
Q Consensus 413 ~--------------~-------------------------------~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~ 446 (495)
. + ...|...+ .+.++++.+-|.|. +.+|++|..
T Consensus 89 ~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l-~~~ii~Ghe 167 (327)
T KOG0643|consen 89 TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL-GETIIAGHE 167 (327)
T ss_pred EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc-CCEEEEecC
Confidence 0 0 00111111 34467899999999 999999999
Q ss_pred CCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 447 EGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 447 dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
||.|.+||+++| +.+.+...|...|+.++|++ +..+++|+|.|.+-++
T Consensus 168 ~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 168 DGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKL 216 (327)
T ss_pred CCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCcccee
Confidence 999999999997 55677788999999999999 9999999999987654
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=1.8e-14 Score=141.04 Aligned_cols=149 Identities=15% Similarity=0.271 Sum_probs=124.2
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEE---Eeeccccc-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIA---ELRHGDIF-HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~---~~~~~~~~-~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
.....+++|+-|..|+|||+..-.. ..+. .+....+. ||...|++++-++.|..|++||..+-+++||.++.
T Consensus 128 k~~~lvaSgGLD~~IflWDin~~~~-~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~--- 203 (735)
T KOG0308|consen 128 KNNELVASGGLDRKIFLWDINTGTA-TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--- 203 (735)
T ss_pred cCceeEEecCCCccEEEEEccCcch-hhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc---
Confidence 3456678999999999999852211 0111 11112233 88999999999999999999999999999999997
Q ss_pred CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
.......+|...|..+..+.| |..++|++.||+|++||+...+|+.++..|...||++..+| +-.++++|+.||
T Consensus 204 ----~kimkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 204 ----KKIMKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDG 277 (735)
T ss_pred ----cceeeeeccccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCC
Confidence 233344489999999999999 99999999999999999999999999999999999999998 889999999999
Q ss_pred cEe
Q 048199 492 KVL 494 (495)
Q Consensus 492 ~v~ 494 (495)
.|.
T Consensus 278 ~i~ 280 (735)
T KOG0308|consen 278 NIY 280 (735)
T ss_pred cEE
Confidence 985
No 87
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.55 E-value=1.4e-15 Score=98.06 Aligned_cols=38 Identities=39% Similarity=1.086 Sum_probs=31.5
Q ss_pred cccccchhhhccccCCCCccchhhHHhhhcCC----CCCCCC
Q 048199 55 CPICMQIIKEAFLTACGHSFCYMCIITHLRNK----SDCPCC 92 (495)
Q Consensus 55 C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~----~~CP~C 92 (495)
||||+++|++||+|+|||+||+.||.+|+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999999875 379988
No 88
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.3e-15 Score=148.85 Aligned_cols=143 Identities=19% Similarity=0.307 Sum_probs=122.2
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.....+..|..++++++||+..- ..+.+ +.+|...+.++.|||-+.++++|+.|..+++||++..
T Consensus 80 ~~E~LlaagsasgtiK~wDleeA---k~vrt-----Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~------- 144 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEA---KIVRT-----LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK------- 144 (825)
T ss_pred cchhhhcccccCCceeeeehhhh---hhhhh-----hhccccCcceeeeccceEEeccccccccceehhhhcc-------
Confidence 34455678888999999998532 22333 4489999999999999999999999999999999964
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+....-+|...+..+.|+|+ |.++++|+.|.+++|||...|.....|.+|+..+.++.|+| ...++++||.|++|++
T Consensus 145 Gc~~~~~s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 145 GCSHTYKSHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRF 222 (825)
T ss_pred CceeeecCCcceeEEEeecCC-CceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeee
Confidence 133333457777999999999 99999999999999999999999999999999999999999 8899999999999985
No 89
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.1e-14 Score=125.00 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=117.9
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEc-c-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFD-R-DDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
+.++++.+.|.+|+|+..........+.++. ||.++|+-++|- | .|.+|++++.||+|.||.-.++ ..
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-----Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-----~w 92 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELT-----GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-----RW 92 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEec-----CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-----ch
Confidence 4567888999999999987655556677777 999999999995 5 7999999999999999998886 11
Q ss_pred CCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEEeCCCC--c-ceeecccccCcEEEEEeecC--CC--------
Q 048199 416 HCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVWDVTTQ--Q-SVMEYEEHEKRAWSVDFSRT--EP-------- 481 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iwd~~~~--~-~~~~~~~h~~~v~~v~~~~~--~g-------- 481 (495)
........|...|++++|-|. -|..|++++.||.|.|.+.+.. . .-.....|+-.|++++|.|. .|
T Consensus 93 ~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~ 172 (299)
T KOG1332|consen 93 TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA 172 (299)
T ss_pred hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence 112222358889999999775 2678999999999999998753 2 23445689999999999983 13
Q ss_pred ---CeEEEeeCCCcEeC
Q 048199 482 ---SMLVSGSDDCKVLY 495 (495)
Q Consensus 482 ---~~l~s~s~D~~v~l 495 (495)
+.|+||+.|..|+|
T Consensus 173 ~~~krlvSgGcDn~Vki 189 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKI 189 (299)
T ss_pred cccceeeccCCccceee
Confidence 56999999999986
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.55 E-value=1.8e-12 Score=120.84 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=109.4
Q ss_pred cCcccchhhHHhhhhhhhcc---------------------------cCceEEEEeeccccc---cCCCcEEEEEEccCC
Q 048199 339 EGYNAGLADFQSVLTTFTRY---------------------------SRLRVIAELRHGDIF---HSANIVSSIEFDRDD 388 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~---------------------------~~~~~~~~~~~~~~~---~h~~~V~~l~~~p~~ 388 (495)
...++|+.|.++++||+.+- ++....|+++.++.. .-.+.|+++..++++
T Consensus 274 ~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g 353 (459)
T KOG0288|consen 274 SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG 353 (459)
T ss_pred cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC
Confidence 44788999999999997632 111223333332211 124578888888888
Q ss_pred CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc
Q 048199 389 QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE 468 (495)
Q Consensus 389 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~ 468 (495)
..+.+++.|.++++.|+++. ......... .+...+..+.+.|+|+ +.|+++|+.||.|+||++.++++...+....
T Consensus 354 ~~lLsssRDdtl~viDlRt~-eI~~~~sA~--g~k~asDwtrvvfSpd-~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 354 LELLSSSRDDTLKVIDLRTK-EIRQTFSAE--GFKCASDWTRVVFSPD-GSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred eEEeeecCCCceeeeecccc-cEEEEeecc--ccccccccceeEECCC-CceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 88888888888888888875 000000011 1122334889999999 9999999999999999999999888877654
Q ss_pred C--cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 469 K--RAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 469 ~--~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
. .|++++|+| .|+.|++++.++.+.+
T Consensus 430 s~~aI~s~~W~~-sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 430 SNAAITSLSWNP-SGSGLLSADKQKAVTL 457 (459)
T ss_pred CCcceEEEEEcC-CCchhhcccCCcceEe
Confidence 4 599999999 9999999999998864
No 91
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.53 E-value=2.2e-14 Score=127.63 Aligned_cols=145 Identities=20% Similarity=0.350 Sum_probs=114.1
Q ss_pred ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199 342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSRRIKVFDFASVVNEPADVHCPV 419 (495)
Q Consensus 342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 419 (495)
.....|..+.+|++....+ .+..+......+|....++-+|+| +|+.+++.+ |+++..||+++..+ .-.
T Consensus 138 lasm~dn~i~l~~l~ess~--~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~------~~s 208 (370)
T KOG1007|consen 138 LASMDDNNIVLWSLDESSK--IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKK------NNS 208 (370)
T ss_pred eEEeccCceEEEEcccCcc--hheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhh------hcc
Confidence 3345678899999864332 134443333335677888999998 788888876 99999999998611 122
Q ss_pred eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
....|...+..++|+|....+|+|++.||.|+|||.+. ..++..+.+|..+||+|.|+|....+|+|||.|..|-+
T Consensus 209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNL 285 (370)
T ss_pred hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEE
Confidence 33367778999999999788999999999999999985 67899999999999999999988889999999998753
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=7e-14 Score=126.01 Aligned_cols=146 Identities=13% Similarity=0.208 Sum_probs=113.9
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC----Cc
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA----DV 415 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~----~~ 415 (495)
-+.+|++|+.+.+|+... +..+..++ +|.+.|+.|+.||.+++-++.+.|+.+++||+-.+...+. ..
T Consensus 99 hLlS~sdDG~i~iw~~~~---W~~~~slK-----~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~ 170 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGS---WELLKSLK-----AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK 170 (362)
T ss_pred heeeecCCCcEEEEEcCC---eEEeeeec-----ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc
Confidence 688999999999999854 46677777 8999999999999999999999999999999987632211 00
Q ss_pred CCCee----------------------------ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199 416 HCPVV----------------------------EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH 467 (495)
Q Consensus 416 ~~~~~----------------------------~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h 467 (495)
...+. .+....++.++.|- ++..|++|..|+.|++||..++.++..|.+|
T Consensus 171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecc
Confidence 00000 00111235555554 3779999999999999999999999999999
Q ss_pred cCcEEEEEe-ecCCCCeEEEeeCCCcEeC
Q 048199 468 EKRAWSVDF-SRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 468 ~~~v~~v~~-~~~~g~~l~s~s~D~~v~l 495 (495)
..+|.++.+ ...++.+|+|+|.||.|+|
T Consensus 249 ~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 249 ENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred hhheeeeEEEecCCceEEEEeccCceEEE
Confidence 999999984 3227889999999999985
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.53 E-value=2.4e-14 Score=141.14 Aligned_cols=146 Identities=13% Similarity=0.165 Sum_probs=118.5
Q ss_pred CCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 048199 326 HTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDF 405 (495)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~ 405 (495)
|...+-.........+.+|+.|.++++|...... .. +.+|+..|+++.+-|.+ .++|||.|++||+|.-
T Consensus 100 H~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~-----~~-----l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~ 168 (745)
T KOG0301|consen 100 HKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELV-----YS-----LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG 168 (745)
T ss_pred cccceeeeecCCcCceEecccccceEEecchhhh-----cc-----cCCcchheeeeeecCCC-cEEeccCcceeeeccC
Confidence 3333333333444447999999999999985432 22 33999999999999977 7789999999999987
Q ss_pred cccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE
Q 048199 406 ASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV 485 (495)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~ 485 (495)
.+. .....+|.+-|.++++-++ ..|+|++.||.|++||+ +|.++..+.||+.-|+++.... ++..++
T Consensus 169 ~~~---------l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Iv 235 (745)
T KOG0301|consen 169 GTL---------LKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIV 235 (745)
T ss_pred Cch---------hhhhccchhheeeeEEecC--CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEE
Confidence 553 2234468889999999876 46899999999999998 7999999999999999999777 788999
Q ss_pred EeeCCCcEeC
Q 048199 486 SGSDDCKVLY 495 (495)
Q Consensus 486 s~s~D~~v~l 495 (495)
|++.|++++|
T Consensus 236 s~gEDrtlri 245 (745)
T KOG0301|consen 236 STGEDRTLRI 245 (745)
T ss_pred EecCCceEEE
Confidence 9999999986
No 94
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.52 E-value=1.1e-13 Score=130.84 Aligned_cols=140 Identities=19% Similarity=0.250 Sum_probs=116.6
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
+..+..+..|+.+.+|++.. ...+..+. .|...|.++.|+|+++.+++++.|+.|++||+..+ .
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~---~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------~ 210 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRT---GKCVATLT-----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG--------K 210 (289)
T ss_pred CCEEEEEcCCCcEEEEEccc---cccceeEe-----cCccccceEEECCCcCEEEEecCCCcEEEEECCCC--------c
Confidence 34455555588999999842 22333343 67789999999999999999999999999999875 3
Q ss_pred Ceeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
....+ .+...+.++.|+|+ +.++++++.||.|++||+.++..+..+.+|...|.+++|++ ++.+|++++.|+.|++
T Consensus 211 ~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i 287 (289)
T cd00200 211 CLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRI 287 (289)
T ss_pred eecchhhcCCceEEEEEcCC-CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEe
Confidence 33334 56778999999999 88999999899999999999999999999999999999999 8999999999999875
No 95
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=1.7e-14 Score=143.81 Aligned_cols=107 Identities=16% Similarity=0.303 Sum_probs=87.5
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
....+.+|+.|++|++||+...+. ..+.. +....|+++.|+| .+.+|+++...|.+++||++...
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S---~~t~~-----~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~------ 210 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKS---KSTFR-----SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD------ 210 (839)
T ss_pred CccEEEecCCCceEEEEeeecccc---ccccc-----ccchhhhceeeccCCCceEEEecCCceEEEeeccCch------
Confidence 346678999999999999964322 22222 5678899999999 78899999999999999999861
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ 458 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~ 458 (495)
........|.++|.++.|||+ +.+||||+.|+.|+|||+.++
T Consensus 211 r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 211 RCEKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred hHHHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCC
Confidence 233444579999999999997 999999999999999998754
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.52 E-value=2.4e-12 Score=120.79 Aligned_cols=140 Identities=18% Similarity=0.230 Sum_probs=119.4
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
+...+|+.|..+.++|.. ....+..++ ||+-.|+++.|||+...+++++.|..|+||..... ..+
T Consensus 232 ~~ilTGG~d~~av~~d~~---s~q~l~~~~-----Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-------s~~ 296 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKP---SNQILATLK-----GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-------SEP 296 (506)
T ss_pred CcceecCCCCceEEEecc---hhhhhhhcc-----CcceEEEEEEeccchhheeecCCcceEEeeccccc-------cCc
Confidence 556789899888888763 233445555 99999999999999999999999999999998876 466
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.....|..+|+.+..||. +.||++++.||+.-+.|+++|..+...... .-.+++.+|+| ||-+|.+|..||.|+|
T Consensus 297 ~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKI 373 (506)
T ss_pred cccccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEE
Confidence 667789999999999999 999999999999999999999887766532 23588999999 9999999999999985
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.51 E-value=6.3e-14 Score=125.60 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=106.9
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPV 419 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 419 (495)
.+..|+.|++|++|++.....+.+ . -...|.++|.+++|+.+|..+++|+.|+.+++||+.++ ...
T Consensus 42 ~~~A~SWD~tVR~wevq~~g~~~~--k----a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~--------Q~~ 107 (347)
T KOG0647|consen 42 LLAAGSWDGTVRIWEVQNSGQLVP--K----AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG--------QVS 107 (347)
T ss_pred eEEecccCCceEEEEEecCCcccc--h----hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC--------Cee
Confidence 355899999999999975333222 1 12268999999999999999999999999999999997 333
Q ss_pred eecCCCCCeEEEEEcCCCCC--EEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 420 VEMPTRSKLSCLSWNKFSKN--RIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 420 ~~~~~~~~i~~~~~~p~~~~--~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
..-.|.++|..+.|-+. .. .|+|||+|.+|++||.+...++.++. -..+|++++.-. .+++.+..++.|.
T Consensus 108 ~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~ 179 (347)
T KOG0647|consen 108 QVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLY---PMAVVATAERHIA 179 (347)
T ss_pred eeeecccceeEEEEecC-CCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccC---ceeEEEecCCcEE
Confidence 34468899999999766 44 89999999999999999988888876 456788776543 4666666666654
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2e-13 Score=117.45 Aligned_cols=111 Identities=15% Similarity=0.275 Sum_probs=96.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--------CCCCeEEEEEcCCCCCEEEEec
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--------TRSKLSCLSWNKFSKNRIASSD 445 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~p~~~~~l~sg~ 445 (495)
||++.|.++ ++=++..|++|+.|++||+||++-. ..+..+. ..+.|.+++..|. |.+|++|-
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~--------~~v~~l~~~~~~~glessavaav~vdps-grll~sg~ 250 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN--------SCVNTLDNDFHDGGLESSAVAAVAVDPS-GRLLASGH 250 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeecc--------ceeeeccCcccCCCcccceeEEEEECCC-cceeeecc
Confidence 899999887 3337889999999999999999876 1222111 1246899999999 99999999
Q ss_pred CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 446 YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.|....+||++-++.++.|..|+..|.+|.|+| ...+|+++|+|..||+
T Consensus 251 ~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKL 299 (350)
T ss_pred CCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEE
Confidence 999999999999999999999999999999999 8899999999999985
No 99
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=139.99 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=115.9
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
...+.+|++|.++.+|+.. ..+.....+. ||.+.|++++|..-+.++++|+.|++++|||+.++ .+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~--~~~~i~~~l~-----GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-------~C 283 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLN--NGYLILTRLV-----GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-------EC 283 (537)
T ss_pred cCeEEecCCCceeEEeecc--cceEEEeecc-----CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-------cE
Confidence 3456788888899999874 2222222244 99999999999877889999999999999999988 44
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.....+|.+.+.++... +.++++|+.|.+|++||+.++.++..+.+|.++|+++.++ +.++++|+.|++|++
T Consensus 284 ~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKV 355 (537)
T ss_pred EEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEE
Confidence 45555788899999887 4589999999999999999999999999999999999985 589999999999875
No 100
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.50 E-value=2.1e-13 Score=130.59 Aligned_cols=116 Identities=16% Similarity=0.280 Sum_probs=88.0
Q ss_pred ccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199 371 DIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI 449 (495)
Q Consensus 371 ~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~ 449 (495)
++.||...|.++.|-|... .++|||.|.+|.+|+=... +.......|..-|+++.|+|| |..|+|.+.||+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-------KFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgk 213 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-------KFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGK 213 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-------eeeecccccccceeeEEECCC-CCeEEEecCCcc
Confidence 3345555555555555444 3555555665555543221 111122246667999999999 999999999999
Q ss_pred EEEEeCCCCcceeecc---cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 450 VTVWDVTTQQSVMEYE---EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|.+||=.+|+.+..|. +|.+.|++++|+| |+..++|+|.|.++||
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKI 261 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEE
Confidence 9999999999999998 8999999999999 9999999999999986
No 101
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=2.2e-14 Score=138.05 Aligned_cols=73 Identities=29% Similarity=0.672 Sum_probs=67.4
Q ss_pred ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
+.++.++..+.|+||++.|.+|++++|||+||..||..|+.....||.|+..+....+..|+.+.++|+.+..
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred ccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999988899999999988889999999999998864
No 102
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.49 E-value=4.5e-14 Score=137.70 Aligned_cols=118 Identities=15% Similarity=0.349 Sum_probs=102.3
Q ss_pred CCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEcccc-ccCCCCcCCC-eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 375 SANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASV-VNEPADVHCP-VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 375 h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
....|+++.|+| |.+.|+.++.|+.|++|.+..+ .... ...+ .....|..+|+++.|||--.+.|+++++|.+|+
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~ 703 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE 703 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--cCCcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence 357899999999 7889999999999999999876 1111 1122 223468889999999998788999999999999
Q ss_pred EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+||+.++.....|.+|++.|.+++|+| +|..+||.+.||+|++
T Consensus 704 lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 704 LWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRV 746 (1012)
T ss_pred eeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEE
Confidence 999999999999999999999999999 9999999999999985
No 103
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=123.75 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=113.4
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
+...+..++.|..++.+.|||+..+. ....+. +|.-+|++++|+++|++|+|+|.|.+|++||+..+
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T~~---iar~ls-----aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g----- 97 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDTFR---IARMLS-----AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG----- 97 (405)
T ss_pred eccCcceeeeeccCCcEEEEEccccc---hhhhhh-----ccccceeEEEecCCCCEeeeecCCceeEEEeccCC-----
Confidence 34456778899999999999996443 122222 79999999999999999999999999999999887
Q ss_pred CcCCCeeecCCCCCeEE-----------------------------------------------EEEcCCCCCEEEEecC
Q 048199 414 DVHCPVVEMPTRSKLSC-----------------------------------------------LSWNKFSKNRIASSDY 446 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~-----------------------------------------------~~~~p~~~~~l~sg~~ 446 (495)
.++..+...++|+. ..|++. |.+|++|..
T Consensus 98 ---s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~-g~yIitGts 173 (405)
T KOG1273|consen 98 ---SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR-GKYIITGTS 173 (405)
T ss_pred ---CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC-CCEEEEecC
Confidence 12222212222222 235555 899999999
Q ss_pred CCcEEEEeCCCCcceeeccccc-CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 447 EGIVTVWDVTTQQSVMEYEEHE-KRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.|.+.++|..+.+++..++-.. ..|..+.|+. .|..|+.-+.|+.||.
T Consensus 174 KGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ 222 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRT 222 (405)
T ss_pred cceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEE
Confidence 9999999999999999988665 7889999999 9999999999999873
No 104
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.48 E-value=6e-13 Score=125.86 Aligned_cols=143 Identities=18% Similarity=0.260 Sum_probs=118.0
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..++.|..|+.+.+|++... .....+. .|...+..+.|+|++++|++++.|+.|++||+..+
T Consensus 19 ~~~~~l~~~~~~g~i~i~~~~~~---~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------- 83 (289)
T cd00200 19 PDGKLLATGSGDGTIKVWDLETG---ELLRTLK-----GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG------- 83 (289)
T ss_pred CCCCEEEEeecCcEEEEEEeeCC---CcEEEEe-----cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-------
Confidence 34466778888899999998532 2233333 67888999999999999999999999999999875
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
........|...+.++.|+++ +.++++++.||.|.+||+.++.....+..|...|.+++|+| ++.++++++.|+.|++
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i 161 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKL 161 (289)
T ss_pred cceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEE
Confidence 122233356678999999999 88999998899999999999999999999999999999999 8889999888998864
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.3e-13 Score=120.14 Aligned_cols=117 Identities=18% Similarity=0.267 Sum_probs=97.5
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEE-cCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW-NKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~p~~~~~l~sg~~dg~v~i 452 (495)
.|.+.|-++..+--|..|+|++.|++||||.++.... ........+|.++++.++| ||.-|.+|+|+++||.|.|
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 6888888888887899999999999999999998711 0223345589999999999 6666999999999999999
Q ss_pred EeCCCCc--ceeecccccCcEEEEEeecCC--CCeEEEeeCCCcEeC
Q 048199 453 WDVTTQQ--SVMEYEEHEKRAWSVDFSRTE--PSMLVSGSDDCKVLY 495 (495)
Q Consensus 453 wd~~~~~--~~~~~~~h~~~v~~v~~~~~~--g~~l~s~s~D~~v~l 495 (495)
|.-.+|+ ....+..|...|++|+|.| + |-+|+++|.||.|.|
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wap-heygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAP-HEYGLLLACASSDGKVSV 130 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccc-cccceEEEEeeCCCcEEE
Confidence 9988774 4556678999999999998 5 447899999999875
No 106
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=1.4e-13 Score=130.87 Aligned_cols=112 Identities=24% Similarity=0.359 Sum_probs=99.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
...|+++.|..||.+|+.|...|.|+|||+.+. ..+. ...|..++..+.|+|+++..|++|+.|+.+++||
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 356999999999999999999999999996653 2222 3368889999999999889999999999999999
Q ss_pred CCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+.+......+.+|++.|.+.+|+|.++.+++|||+||+||+
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 99988767899999999999999988889999999999985
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=4.2e-13 Score=121.07 Aligned_cols=112 Identities=13% Similarity=0.232 Sum_probs=100.1
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~i 452 (495)
.|.+.|+++++ ++.++++||.|-+|+|||+... ........|.+.|+++.|.+. ..+.|++|+.||.|.+
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~-------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKR-------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccch-------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 79999999999 6889999999999999999986 233344578899999999877 2348999999999999
Q ss_pred EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
||+..-.++.++.+|.+.|+.++.+| .+.+-+|.+.|+.+++
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRT 153 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeee
Confidence 99999999999999999999999999 9999999999998874
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.46 E-value=3.6e-13 Score=133.02 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=115.9
Q ss_pred CCCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 048199 324 QPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVF 403 (495)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vw 403 (495)
.+|.-.+-.....+...+.+|+.|.++++|.-. ..+.++. ||++.|+++++-+++ .|++++.||.|++|
T Consensus 137 ~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~-----~~l~tf~-----gHtD~VRgL~vl~~~-~flScsNDg~Ir~w 205 (745)
T KOG0301|consen 137 QGHTASVWAVASLPENTYVTGSADKTIKLWKGG-----TLLKTFS-----GHTDCVRGLAVLDDS-HFLSCSNDGSIRLW 205 (745)
T ss_pred CCcchheeeeeecCCCcEEeccCcceeeeccCC-----chhhhhc-----cchhheeeeEEecCC-CeEeecCCceEEEE
Confidence 344433333444555689999999999999863 2244444 999999999998865 45699999999999
Q ss_pred EccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCe
Q 048199 404 DFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSM 483 (495)
Q Consensus 404 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~ 483 (495)
++... ......+|.+-+++++..++ +..|+|.+.|++++||+.. ++++.+.--+..||++.+-+ +|.
T Consensus 206 ~~~ge--------~l~~~~ghtn~vYsis~~~~-~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgD- 272 (745)
T KOG0301|consen 206 DLDGE--------VLLEMHGHTNFVYSISMALS-DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGD- 272 (745)
T ss_pred eccCc--------eeeeeeccceEEEEEEecCC-CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCC-
Confidence 99654 55566688899999996666 6799999999999999976 77787774455899999988 775
Q ss_pred EEEeeCCCcEeC
Q 048199 484 LVSGSDDCKVLY 495 (495)
Q Consensus 484 l~s~s~D~~v~l 495 (495)
|++|+.||.|||
T Consensus 273 Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 273 IVVGGSDGRVRV 284 (745)
T ss_pred EEEeccCceEEE
Confidence 678888999986
No 109
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.46 E-value=1.2e-14 Score=131.30 Aligned_cols=73 Identities=32% Similarity=0.688 Sum_probs=68.0
Q ss_pred ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
+.+..++..|.|.||+++|.-|+++||||+||.-||.+++...+.||.|+.+++..+|+.|+.+..+++.+..
T Consensus 15 pslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 15 PSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred chhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 3457788899999999999999999999999999999999999999999999999999999999999988754
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.46 E-value=1.1e-13 Score=126.94 Aligned_cols=136 Identities=18% Similarity=0.277 Sum_probs=111.7
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
.+++++. .+-|||.. +..++..+. ...+.|.++.|+|.. .+|++|+.|++|.+||++.. .|
T Consensus 161 ~FaTcGe--~i~IWD~~---R~~Pv~sms-----wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~--------~P 222 (433)
T KOG0268|consen 161 VFATCGE--QIDIWDEQ---RDNPVSSMS-----WGADSISSVKFNPVETSILASCASDRSIVLYDLRQA--------SP 222 (433)
T ss_pred cccccCc--eeeecccc---cCCccceee-----cCCCceeEEecCCCcchheeeeccCCceEEEecccC--------Cc
Confidence 3444443 35578764 334566665 346789999999954 47888889999999999997 56
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+....-..+.+.|+|+|. ...|++|+.|..+..||++. .+++..+.+|...|.+|+|+| .|.-++|||.|.+|+|
T Consensus 223 l~KVi~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 223 LKKVILTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRI 298 (433)
T ss_pred cceeeeeccccceecCcc-ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-CcchhccccccceEEE
Confidence 665556667789999996 99999999999999999987 578899999999999999999 9999999999999986
No 111
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=3.8e-13 Score=125.27 Aligned_cols=115 Identities=15% Similarity=0.247 Sum_probs=100.2
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
.|+..|+-+.|+++|++|||++.|.+.-+|++..... ..-.....+|..+|..+.|+|| ..+|++++.|..+.+|
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLW 296 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCC-CCeEEecCchHheeec
Confidence 7999999999999999999999999999999876511 1123345589999999999999 8899999999999999
Q ss_pred eCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
|+.+|..+..+. +|...+.+.+|.| ||..+++||.|+.+.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTII 337 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEE
Confidence 999999887775 3567899999999 999999999999875
No 112
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.45 E-value=2.8e-13 Score=120.70 Aligned_cols=136 Identities=18% Similarity=0.296 Sum_probs=107.6
Q ss_pred hhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeec-C
Q 048199 346 ADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-P 423 (495)
Q Consensus 346 ~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~ 423 (495)
.|.++..||.... ...+.+.. .|...|+++.|+|+.+ +|+|||.|+.|||||++.. ..|+... +
T Consensus 191 ~d~tl~~~D~RT~---~~~~sI~d----AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-------k~pv~el~~ 256 (370)
T KOG1007|consen 191 SDSTLQFWDLRTM---KKNNSIED----AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-------KFPVQELPG 256 (370)
T ss_pred CCCcEEEEEccch---hhhcchhh----hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC-------CccccccCC
Confidence 3446666776422 22333332 5888999999999766 7889999999999999987 5666666 5
Q ss_pred CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-----------------------------cceeecccccCcEEEE
Q 048199 424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-----------------------------QSVMEYEEHEKRAWSV 474 (495)
Q Consensus 424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-----------------------------~~~~~~~~h~~~v~~v 474 (495)
|...||++.|+|....+|+||+.|..|.+|...+- ..+.+|..|++.|+++
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence 77799999999998899999999999999964210 1355788899999999
Q ss_pred EeecCCCCeEEEeeCCCcEeC
Q 048199 475 DFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 475 ~~~~~~g~~l~s~s~D~~v~l 495 (495)
+|+..++=++||-|+||+|-|
T Consensus 337 aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 337 AWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred eeccCCCeeEEEeccCceEEe
Confidence 999888989999999999854
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.45 E-value=1.2e-13 Score=131.80 Aligned_cols=142 Identities=15% Similarity=0.223 Sum_probs=108.9
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
...+++.+.|.+++||++.+..+ .+..+++.-..+..-.|+..+|+|+|.+||+|..||+|.+|+..... ..
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~--q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~------v~ 352 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKS--QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT------VR 352 (641)
T ss_pred ccceEEecCCCcEEEEecCCchh--heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc------cc
Confidence 45688899999999999975443 33344432222456688999999999999999999999999986641 12
Q ss_pred Ceee--cCCCC--CeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Ccceeecccc--cCcEEEEEeecCCCCeEEEeeC
Q 048199 418 PVVE--MPTRS--KLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 418 ~~~~--~~~~~--~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
++.. -.|.. .|+||.|++| |++|+|-+.|+++++||++. .+++..+.+- ..+-+.++|+| +..+|++|+.
T Consensus 353 p~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS 429 (641)
T KOG0772|consen 353 PVMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTS 429 (641)
T ss_pred cceEeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEeccc
Confidence 3332 25665 7999999999 99999999999999999986 4566666553 33567889999 8899999874
No 114
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.44 E-value=2.9e-14 Score=121.86 Aligned_cols=59 Identities=29% Similarity=0.747 Sum_probs=51.0
Q ss_pred CCCCccccccccchhhhccccCCCCccchhhHHhhhcC----------------CCCCCCCCCcCccCCCcchHH
Q 048199 48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN----------------KSDCPCCGHYLTNNQLYPNFL 106 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~----------------~~~CP~Cr~~~~~~~l~~n~~ 106 (495)
+..+++.|+||++.+++|++++|||+||+.||.+|+.. ...||.||.+++..++.+++.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 44567999999999999999999999999999999742 258999999999888877753
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.44 E-value=3.8e-13 Score=120.17 Aligned_cols=142 Identities=14% Similarity=0.191 Sum_probs=112.3
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC---CCEEEEEeCCCcEEEEEccccccCCC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD---DQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~---~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
+...+.+++.|.++++||.. ......+++ -.+.|++-+++|- -.++|+|..|-.|++.|+.++
T Consensus 113 DtGmFtssSFDhtlKVWDtn---TlQ~a~~F~------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----- 178 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTN---TLQEAVDFK------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----- 178 (397)
T ss_pred cCceeecccccceEEEeecc---cceeeEEee------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-----
Confidence 34557789999999999973 333333333 2467888888883 237778888999999999998
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceee--------------cccccCcEEEEEeec
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVME--------------YEEHEKRAWSVDFSR 478 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~--------------~~~h~~~v~~v~~~~ 478 (495)
.+.....+|.+.|.++.|+|...-+|++|+.||.|++||++.. .++.. -..|.+.|++++|+.
T Consensus 179 --s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 179 --SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred --cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 4555666899999999999997888999999999999999853 33332 235778999999999
Q ss_pred CCCCeEEEeeCCCcEeC
Q 048199 479 TEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 479 ~~g~~l~s~s~D~~v~l 495 (495)
++.++++++.|..+++
T Consensus 257 -d~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 257 -DARYLASCGTDDRIRV 272 (397)
T ss_pred -cchhhhhccCccceEE
Confidence 9999999999988874
No 116
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.44 E-value=4.8e-13 Score=123.30 Aligned_cols=143 Identities=18% Similarity=0.317 Sum_probs=111.4
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
..+++++-|++++|||+..-.+...+.+ + .|.+-|..|+|+..-.+|++|+.||+++|||++.. ....|
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~-k-----Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~-----~~~~p 339 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPKKAAVST-K-----AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF-----KSGQP 339 (440)
T ss_pred ceEEeeecCceEEEEEecCCCccceeEe-e-----ccCCceeeEEccCCcceeeecCCCceEEEEEhhhc-----cCCCc
Confidence 4578899999999999964333333333 3 78899999999998789999999999999999986 22356
Q ss_pred eeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc----------------ceeecccc--cCcEEEEEeecC
Q 048199 419 VVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ----------------SVMEYEEH--EKRAWSVDFSRT 479 (495)
Q Consensus 419 ~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~----------------~~~~~~~h--~~~v~~v~~~~~ 479 (495)
+..+ .|..+|+++.|+|.....|++++.|..|.|||+..-. +-+-+.-| ...|..|.|++-
T Consensus 340 VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q 419 (440)
T KOG0302|consen 340 VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ 419 (440)
T ss_pred ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence 6655 5888999999999878899999999999999985311 11122235 346888999987
Q ss_pred CCCeEEEeeCCCc
Q 048199 480 EPSMLVSGSDDCK 492 (495)
Q Consensus 480 ~g~~l~s~s~D~~ 492 (495)
.+.+|+|.+.||.
T Consensus 420 iPG~lvsTa~dGf 432 (440)
T KOG0302|consen 420 IPGLLVSTAIDGF 432 (440)
T ss_pred CCCeEEEecccce
Confidence 7889999999985
No 117
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.42 E-value=4.7e-14 Score=96.11 Aligned_cols=62 Identities=31% Similarity=0.675 Sum_probs=36.8
Q ss_pred CCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHH
Q 048199 48 ELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLL 111 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v 111 (495)
.+++.|.|++|.+++++||.+ .|.|+||..||.+.+.. .||+|+.+....|++.|..+.+++
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----HHHHHHH
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhhhhhhccC
Confidence 456778999999999999965 89999999999987653 599999999999999999988774
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=4.9e-13 Score=125.73 Aligned_cols=148 Identities=14% Similarity=0.221 Sum_probs=113.8
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeecc-------------ccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-------------DIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFD 404 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~-------------~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd 404 (495)
...+-|.-|..|.|||+.-.+...+...+... ...+|++.|.+++|+. ..++||+||.|++|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 34566777889999997543444444444311 1126999999999987 567999999999999999
Q ss_pred ccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCe
Q 048199 405 FASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSM 483 (495)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~ 483 (495)
+.++ .+...+. |.++|.++.|||..+.+|++|++|++|.+.|.+........-.-.+.|-.++|.|.....
T Consensus 273 ~~~g--------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~ 344 (463)
T KOG0270|consen 273 VDTG--------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENS 344 (463)
T ss_pred cCCC--------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCcee
Confidence 9998 5555554 777899999999989999999999999999998532222222235678899999977788
Q ss_pred EEEeeCCCcEe
Q 048199 484 LVSGSDDCKVL 494 (495)
Q Consensus 484 l~s~s~D~~v~ 494 (495)
++++.+||+|+
T Consensus 345 f~~~tddG~v~ 355 (463)
T KOG0270|consen 345 FFVSTDDGTVY 355 (463)
T ss_pred EEEecCCceEE
Confidence 99999999987
No 119
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.41 E-value=3.1e-13 Score=125.78 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=118.6
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeec-cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc-c--cCC---
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRH-GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV-V--NEP--- 412 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~-~--~~~--- 412 (495)
.+++|+.|..++||.+.+.........+.. +.+.+|...|+.+.|+|+|++|+||+.++.|.+|-.... . ...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 688999999999999865432221111111 234489999999999999999999999999999987621 0 000
Q ss_pred --C-CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 413 --A-DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 413 --~-~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
. .........+|...|+.++|+|+ ++++++|+.|.++++||+..|..+..+.+|...|..++|.| -+.++++-|.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~ 185 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSS 185 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCC-CceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhcc
Confidence 0 01111223368888999999999 99999999999999999999999999999999999999999 8889999888
Q ss_pred CCc
Q 048199 490 DCK 492 (495)
Q Consensus 490 D~~ 492 (495)
|..
T Consensus 186 dr~ 188 (434)
T KOG1009|consen 186 DRH 188 (434)
T ss_pred Ccc
Confidence 873
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.41 E-value=5.2e-13 Score=127.17 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=110.6
Q ss_pred hhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---
Q 048199 346 ADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM--- 422 (495)
Q Consensus 346 ~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--- 422 (495)
..+-|+|||+..-....++..+. +..-...|++..+.|||+.|++||.-.++.|||+... ++....
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLd---cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAap--------Tprikaelt 506 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLD---CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP--------TPRIKAELT 506 (705)
T ss_pred CCCeEEEeeccCCCCCCcccccc---ccCcccceeeeEecCCCceEEeccccceeeeeeccCC--------CcchhhhcC
Confidence 34568999987554444444443 2234678999999999999999999999999999986 221111
Q ss_pred CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 423 PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 423 ~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
...-..++++.+|| .++.+++..||.|.|||+.+...+..|.||.+.+.||.+++ +|+.|-||+-|.+||
T Consensus 507 ssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvR 576 (705)
T KOG0639|consen 507 SSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVR 576 (705)
T ss_pred CcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCcccee
Confidence 11224678899999 88999999999999999999999999999999999999999 999999999999997
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.9e-12 Score=122.60 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=120.0
Q ss_pred cccccCcccchhhHHhhhhhhhcc----c--CceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEcc
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRY----S--RLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFA 406 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~----~--~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~ 406 (495)
..+++.+.+|+.|+.|.+|.+... . ...++..+. +|+-+|+++...+. ..+++|+|.|.++|+||+.
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-----~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-----DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-----cCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence 346778899999999999987532 1 123344444 89999999998874 4589999999999999999
Q ss_pred ccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC----------------CcceeecccccC-
Q 048199 407 SVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT----------------QQSVMEYEEHEK- 469 (495)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~----------------~~~~~~~~~h~~- 469 (495)
.+ .....+.....+.+++.+|. +..++.|+.+|.|.+.++.. +..+..+.||.+
T Consensus 207 ~g--------~LLlti~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~ 277 (476)
T KOG0646|consen 207 LG--------VLLLTITFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE 277 (476)
T ss_pred cc--------eeeEEEecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence 97 45566667788999999999 99999999999999988753 234567789988
Q ss_pred -cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 470 -RAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 470 -~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.|++++++- ||.+|+||+.||.|+|
T Consensus 278 ~~ITcLais~-DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 278 SAITCLAIST-DGTLLLSGDEDGKVCV 303 (476)
T ss_pred cceeEEEEec-CccEEEeeCCCCCEEE
Confidence 999999999 9999999999999975
No 122
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.4e-13 Score=131.31 Aligned_cols=147 Identities=17% Similarity=0.245 Sum_probs=122.3
Q ss_pred ccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199 332 DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 332 ~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
..+..++..++.|..++.+.|||..... .+..+.. +|.+.|-+++|. +..+.+|+.|+.|..+|++...
T Consensus 223 v~ws~~G~~LavG~~~g~v~iwD~~~~k---~~~~~~~----~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~-- 291 (484)
T KOG0305|consen 223 VKWSPDGSHLAVGTSDGTVQIWDVKEQK---KTRTLRG----SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ-- 291 (484)
T ss_pred EEECCCCCEEEEeecCCeEEEEehhhcc---ccccccC----CcCceeEEEecc--CceEEEecCCCcEEEEEEecch--
Confidence 3444567778889999999999985432 2444441 399999999996 7789999999999999999871
Q ss_pred CCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC-
Q 048199 412 PADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD- 489 (495)
Q Consensus 412 ~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~- 489 (495)
..+. ..+|...|..+.|++| +.++|+|+.|+.+.|||.....+...+.+|...|..++|+|-...+||+|+.
T Consensus 292 -----~~~~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 292 -----HVVSTLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred -----hhhhhhhcccceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence 1122 4468888999999999 9999999999999999998889999999999999999999977889999885
Q ss_pred -CCcEeC
Q 048199 490 -DCKVLY 495 (495)
Q Consensus 490 -D~~v~l 495 (495)
|++|++
T Consensus 366 ~D~~i~f 372 (484)
T KOG0305|consen 366 ADRCIKF 372 (484)
T ss_pred cccEEEE
Confidence 888874
No 123
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.40 E-value=8.8e-13 Score=136.72 Aligned_cols=150 Identities=14% Similarity=0.174 Sum_probs=120.2
Q ss_pred CCCcccccc-ccccccCcccchhhHHhhhhhhhc------cc---------CceEEEEeeccccccCCCcEEEEEEccCC
Q 048199 325 PHTKQESDK-NIIHREGYNAGLADFQSVLTTFTR------YS---------RLRVIAELRHGDIFHSANIVSSIEFDRDD 388 (495)
Q Consensus 325 ~~~~~~~~~-~~~~~~~~~~g~~d~~~~lw~~~~------~~---------~~~~~~~~~~~~~~~h~~~V~~l~~~p~~ 388 (495)
.|.+.+++. +..++..+++|++|..+.||.... +. +.+.+..+. +|.+.|.++.|+|++
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-----~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-----GHDSDVLDVNWSPDD 141 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-----cCCCccceeccCCCc
Confidence 344555566 567889999999999999998752 11 112333334 899999999999999
Q ss_pred CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-
Q 048199 389 QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH- 467 (495)
Q Consensus 389 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h- 467 (495)
.+|+++|.|.+|.|||..+. .......+|.+.|-.+.|.|- |.||+|-+.|++|+||++.+-...+.+.++
T Consensus 142 ~~lvS~s~DnsViiwn~~tF-------~~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTF-------ELLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred cEEEEecccceEEEEccccc-------eeeeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 99999999999999999986 344455689999999999999 999999999999999997765555555544
Q ss_pred -----cCcEEEEEeecCCCCeEEEee
Q 048199 468 -----EKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 468 -----~~~v~~v~~~~~~g~~l~s~s 488 (495)
.....-+.|+| ||.+|++.-
T Consensus 214 ~~~~~~T~f~RlSWSP-DG~~las~n 238 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSP-DGHHLASPN 238 (942)
T ss_pred hhCCCcceeeecccCC-CcCeecchh
Confidence 23567899999 999999875
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=1.3e-12 Score=117.85 Aligned_cols=167 Identities=19% Similarity=0.134 Sum_probs=127.9
Q ss_pred hhhhccCCCCcccccccc-ccccCcccchhhHHhhhhhhhcc---------------------cCceEE---------EE
Q 048199 318 RRQMANQPHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRY---------------------SRLRVI---------AE 366 (495)
Q Consensus 318 r~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~---------------------~~~~~~---------~~ 366 (495)
++...|.+|.+.++...+ .++..+.+|++|.+..||...-. ++...- .+
T Consensus 181 ~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 181 ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 344456677766666555 45566789999999999983200 000000 00
Q ss_pred eec--cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEE
Q 048199 367 LRH--GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIAS 443 (495)
Q Consensus 367 ~~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~s 443 (495)
++. -.+.+|.+.|.+..|-..|+.+++++.|.+..+||+.++ .++. ..+|...++-++-||. ..++++
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg--------e~v~~LtGHd~ELtHcstHpt-QrLVvT 331 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG--------EVVNILTGHDSELTHCSTHPT-QRLVVT 331 (481)
T ss_pred eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC--------ceeccccCcchhccccccCCc-ceEEEE
Confidence 110 123389999999999999999999999999999999998 3333 3478888999999999 889999
Q ss_pred ecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 444 SDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 444 g~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++.|.++++||++. -..+..|.||.+.|+++.|+. ++.++|||+|.+|||
T Consensus 332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKv 382 (481)
T KOG0300|consen 332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKV 382 (481)
T ss_pred eccCceeEeccchhhcceeeeecccccceeEEEEec--CCceeecCCCceEEE
Confidence 99999999999985 456889999999999999995 567999999999986
No 125
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.39 E-value=4.9e-12 Score=116.31 Aligned_cols=112 Identities=18% Similarity=0.272 Sum_probs=101.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
.|++.|.+++.+|+.++++|||.|-...+|++.++ ..+....+|...|+++.|+-+ +.+|+||+.+|.|+||
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-------e~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-------EFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVF 133 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-------cceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEE
Confidence 89999999999999999999999999999999998 345566689999999999999 9999999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
++.++.....+...-..|--+.|+| .+.+|+.|+.||.|-
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVW 173 (399)
T ss_pred EcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEE
Confidence 9999988888875556677799999 999999999999874
No 126
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.39 E-value=1.2e-12 Score=121.29 Aligned_cols=137 Identities=12% Similarity=0.135 Sum_probs=110.3
Q ss_pred cccCcccchhhHHhhhhhhhcccC----ceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSR----LRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
+...+++|++|.+++||.+-...- ..++..+. ||+..|--+.|||. .+.|+|+|.|.+|.+||+.++
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-----gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg--- 164 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-----GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG--- 164 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEe-----ecceeEEEEeecccchhhHhhccCCceEEEEeccCC---
Confidence 345678999999999999753221 23444554 99999999999995 668999999999999999998
Q ss_pred CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCc-EEEEEeecCCCCeEEEeeC
Q 048199 412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR-AWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~~g~~l~s~s~ 489 (495)
..+..+.|.+.|+++.|+-+ |.+|++.+.|..|+|||.++++.+..-.+|.+. -.-+.|-. +|. ++|.+.
T Consensus 165 -----eali~l~hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~-i~tTGf 235 (472)
T KOG0303|consen 165 -----EALITLDHPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGK-IFTTGF 235 (472)
T ss_pred -----ceeeecCCCCeEEEEEeccC-CceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCc-eeeecc
Confidence 44555679999999999999 999999999999999999999999888888652 23345665 777 555543
No 127
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.39 E-value=4.2e-13 Score=117.30 Aligned_cols=138 Identities=20% Similarity=0.307 Sum_probs=109.8
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
+....+++..||+.++|+...-+. +..+ .|...|.+++|+.|.++|+||+.++.+||||++.. .
T Consensus 70 na~~aasaaadftakvw~a~tgde---lhsf------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p-------~ 133 (334)
T KOG0278|consen 70 NATRAASAAADFTAKVWDAVTGDE---LHSF------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP-------K 133 (334)
T ss_pred hhhhhhhhcccchhhhhhhhhhhh---hhhh------hhhheeeeEEecccchhhhccchHHHhhhhhccCC-------C
Confidence 345567899999999999742211 2222 57889999999999999999999999999999987 3
Q ss_pred CCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 417 CPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 417 ~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+... -+|.+.|..+-|-.. ...|+|+++|++|++||.+++..++++. ...+|+++.+++ +|.+|..+ +.+.|+
T Consensus 134 App~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-dG~ilTia-~gssV~ 208 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-DGRILTIA-YGSSVK 208 (334)
T ss_pred CCchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-CCCEEEEe-cCceeE
Confidence 33333 368889999999776 6788888999999999999999999987 466899999999 88777554 444443
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=4.9e-12 Score=114.13 Aligned_cols=147 Identities=16% Similarity=0.236 Sum_probs=116.4
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-------
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE------- 411 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~------- 411 (495)
..+.+++.|.+.+||.+. ....+.... ||.+.|.+|.||+.+.++++++.|++..||...-....
T Consensus 161 pi~gtASADhTA~iWs~E---sg~CL~~Y~-----GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~ 232 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLE---SGACLATYT-----GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS 232 (481)
T ss_pred cceeecccccceeEEeec---cccceeeec-----ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCC
Confidence 345677778888888773 233444444 89999999999999999999999999999983211000
Q ss_pred ----------------CC---------CcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc
Q 048199 412 ----------------PA---------DVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE 465 (495)
Q Consensus 412 ----------------~~---------~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~ 465 (495)
.. ....|+.. .+|.+.|.++.|-.. +..++++++|.+-.+||+.+|..+..+.
T Consensus 233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlwDVEtge~v~~Lt 311 (481)
T KOG0300|consen 233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLWDVETGEVVNILT 311 (481)
T ss_pred CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-cceeeeeeccccceeeeeccCceecccc
Confidence 00 11122322 367888999999887 8999999999999999999999999999
Q ss_pred cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 466 EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 466 ~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
||....+.++-+| +..++++.|.|.+.++
T Consensus 312 GHd~ELtHcstHp-tQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 312 GHDSELTHCSTHP-TQRLVVTSSRDTTFRL 340 (481)
T ss_pred CcchhccccccCC-cceEEEEeccCceeEe
Confidence 9999999999899 8899999999998875
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.6e-12 Score=130.80 Aligned_cols=150 Identities=13% Similarity=0.159 Sum_probs=113.9
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc--cCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV--NEP 412 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~--~~~ 412 (495)
..+++..+.|++|..|++-+.... .....++ +|.++|.+|.|+|.+++||+.+-||+|+|||+..+. ..+
T Consensus 105 ~g~g~~iaagsdD~~vK~~~~~D~---s~~~~lr-----gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl 176 (933)
T KOG1274|consen 105 SGSGKMIAAGSDDTAVKLLNLDDS---SQEKVLR-----GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL 176 (933)
T ss_pred ecCCcEEEeecCceeEEEEecccc---chheeec-----ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc
Confidence 345567788999999998876432 2234444 899999999999999999999999999999999871 111
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc--ccCcEEEEEeecCCCCeEEEeeCC
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
.+ ..+...+.....+..++|+|+ +..|+....|+.|++|+.........+.. |...+..+.|+| +|.|||+++.|
T Consensus 177 ~~-v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~ 253 (933)
T KOG1274|consen 177 TG-VDKDNEFILSRICTRLAWHPK-GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLD 253 (933)
T ss_pred cc-CCccccccccceeeeeeecCC-CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccC
Confidence 11 112222223455788999999 55666777799999999988777766654 445589999999 99999999999
Q ss_pred CcEeC
Q 048199 491 CKVLY 495 (495)
Q Consensus 491 ~~v~l 495 (495)
|.|.|
T Consensus 254 g~I~v 258 (933)
T KOG1274|consen 254 GQILV 258 (933)
T ss_pred CcEEE
Confidence 98864
No 130
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=4.3e-12 Score=122.91 Aligned_cols=114 Identities=12% Similarity=0.155 Sum_probs=88.6
Q ss_pred ccccCcccchhhHHhhhhhhhcc-----cCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccccc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRY-----SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN 410 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~-----~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~ 410 (495)
.....+.+++.|+++++|.+.+. ..++++++++ +|.++|.++.+.+++..+++||.|++|+.|++.....
T Consensus 304 ~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-----aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 304 PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-----AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-----cccCceEEEEecCCceEEEeeccCceeeeeccCCCCC
Confidence 34556789999999999998321 3356788888 9999999999999999999999999999998774311
Q ss_pred CCCCc---CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 411 EPADV---HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 411 ~~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
..... .-.....+|.+.+|.+++|+. ...|++++.||+|++|+.
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred cccccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeecc
Confidence 11111 111234578899999999988 778999999999999964
No 131
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.38 E-value=1.5e-12 Score=116.32 Aligned_cols=148 Identities=20% Similarity=0.351 Sum_probs=116.9
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
+...+.+.+-|.+..||++..- ....++ ..++.|...|.+|+|...+ +.|++.|.||+||+||++.. .+
T Consensus 162 dp~~igtSSiDTTCTiWdie~~----~~~~vk-TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l-----eH 231 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETG----VSGTVK-TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL-----EH 231 (364)
T ss_pred CcceeEeecccCeEEEEEEeec----ccccee-eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc-----cc
Confidence 4455667788889999998532 011122 3566899999999999854 48999999999999999986 33
Q ss_pred CCCeeecCC-CCCeEEEEEcCCCCCEEEEecCCC-cEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 416 HCPVVEMPT-RSKLSCLSWNKFSKNRIASSDYEG-IVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 416 ~~~~~~~~~-~~~i~~~~~~p~~~~~l~sg~~dg-~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.+.+..-.. ..++..++|++.+.+++|+-..|+ .|.|.|++. +.++..+.+|.+.|++++|.|..+.+|+|+++|..
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 333333333 567899999999889999877666 599999997 67899999999999999999988899999999987
Q ss_pred Ee
Q 048199 493 VL 494 (495)
Q Consensus 493 v~ 494 (495)
+.
T Consensus 312 al 313 (364)
T KOG0290|consen 312 AL 313 (364)
T ss_pred EE
Confidence 64
No 132
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.37 E-value=1.6e-13 Score=87.68 Aligned_cols=38 Identities=45% Similarity=1.206 Sum_probs=34.2
Q ss_pred cccccchhhhc-cccCCCCccchhhHHhhhcCCCCCCCC
Q 048199 55 CPICMQIIKEA-FLTACGHSFCYMCIITHLRNKSDCPCC 92 (495)
Q Consensus 55 C~IC~~~~~~P-v~l~CGH~FC~~Ci~~~~~~~~~CP~C 92 (495)
|+||++.+.+| +.++|||+||+.||.+|++...+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 588999999999999999998899998
No 133
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.36 E-value=4.8e-12 Score=111.47 Aligned_cols=120 Identities=21% Similarity=0.333 Sum_probs=103.3
Q ss_pred hcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcC
Q 048199 356 TRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNK 435 (495)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 435 (495)
..|..++++.+++ .|.....+|.|+|+|++||+|+.|-.+.+||++.. .+......+.-+|..+.|+-
T Consensus 174 LsypsLkpv~si~-----AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-------iC~R~isRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 174 LSYPSLKPVQSIK-----AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-------ICERCISRLDWPVRTLSFSH 241 (313)
T ss_pred Eeccccccccccc-----cCCcceEEEEECCCCceEeeccccceeeccChhHh-------hhheeeccccCceEEEEecc
Confidence 3456677777777 79999999999999999999999999999999986 23333334666899999999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 436 FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 436 ~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
| |.+||+|+.|..|-|=++.+|..+..+. ++++.+.|+|+| ...+||-+++|
T Consensus 242 d-g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 242 D-GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred C-cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 9 9999999999999999999999998887 788999999999 88888877765
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.36 E-value=1.4e-12 Score=123.21 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=108.0
Q ss_pred CcccchhhHHhhhhhhh-cccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccC-CCCc-
Q 048199 340 GYNAGLADFQSVLTTFT-RYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNE-PADV- 415 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~- 415 (495)
.++.|..-++|.+|++. .-.....+.-+. .|.++|.+|.|+| +-..+++.|.||+|++-|+...... +...
T Consensus 202 lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-----~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~ 276 (498)
T KOG4328|consen 202 LVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-----PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD 276 (498)
T ss_pred EEEEccCCCcEEEEecCCCCCccCceEEec-----cCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC
Confidence 35566666789999994 111112222222 7999999999999 5568899999999999999865110 0000
Q ss_pred --------------CCCe----------------------eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199 416 --------------HCPV----------------------VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ 459 (495)
Q Consensus 416 --------------~~~~----------------------~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~ 459 (495)
...+ ...-|..+|++++++|....+|+|++.|++.+|||++...
T Consensus 277 ~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~ 356 (498)
T KOG4328|consen 277 TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR 356 (498)
T ss_pred ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence 0000 0112456899999999989999999999999999998643
Q ss_pred c----eeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 460 S----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 460 ~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
. +-....|...|.++.|+| .+..|+|.+.|..|+|
T Consensus 357 ~K~sp~lst~~HrrsV~sAyFSP-s~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 357 GKASPFLSTLPHRRSVNSAYFSP-SGGTLLTTCQDNEIRV 395 (498)
T ss_pred CCCCcceecccccceeeeeEEcC-CCCceEeeccCCceEE
Confidence 2 333456999999999999 5555999999999986
No 135
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=6.7e-12 Score=113.46 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=83.7
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC---------CCCcCCCe----------ee-----------
Q 048199 372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE---------PADVHCPV----------VE----------- 421 (495)
Q Consensus 372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~---------~~~~~~~~----------~~----------- 421 (495)
+.+|.+.|++++|+.||++|+|++.|++|+||+++...+. ..++.+.+ ..
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 3499999999999999999999999999999998753110 00000000 00
Q ss_pred ----------------------cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcce------------------
Q 048199 422 ----------------------MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV------------------ 461 (495)
Q Consensus 422 ----------------------~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~------------------ 461 (495)
..|.-.+..+..... +.+|+|++.|..|.+||.+ |+.+
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 001112222333222 6678888888888888765 4322
Q ss_pred --------------------------------eecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 462 --------------------------------MEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 462 --------------------------------~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..+.||...|..++|++ +...++|.|.||++||
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRI 304 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEE
Confidence 23468999999999999 9999999999999885
No 136
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.3e-13 Score=112.62 Aligned_cols=55 Identities=36% Similarity=0.863 Sum_probs=48.7
Q ss_pred Cccccccccchhhh--ccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199 51 KDMLCPICMQIIKE--AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF 105 (495)
Q Consensus 51 ~~l~C~IC~~~~~~--Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~ 105 (495)
.-..||||++-+.+ |+.++|||+||+.||...+....+||+|++.++.+++.+.|
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 34789999999986 67899999999999999999999999999999888776654
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.35 E-value=7.1e-13 Score=126.24 Aligned_cols=145 Identities=16% Similarity=0.231 Sum_probs=116.1
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
..+.++..+..|+...++.|||+..- .......+. ......++++.+||.++.+++..||.|.|||+.+.
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAap-Tprikaelt-----ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq---- 541 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAP-TPRIKAELT-----SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---- 541 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCC-CcchhhhcC-----CcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----
Confidence 44556677888888889999998521 111111121 33467889999999999999999999999999986
Q ss_pred CCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 413 ADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 413 ~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
..+..+ +|.+.+.||.+++| |..|.||+.|.+|+-||++.++.+.... ....|.++.++| ++.+|+.|-.++
T Consensus 542 ----~~VrqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP-~~dWlavGMens 614 (705)
T KOG0639|consen 542 ----TLVRQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCP-TGDWLAVGMENS 614 (705)
T ss_pred ----eeeecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCC-CccceeeecccC
Confidence 455554 78899999999999 9999999999999999999988765543 367899999999 999999998887
Q ss_pred cEe
Q 048199 492 KVL 494 (495)
Q Consensus 492 ~v~ 494 (495)
.|-
T Consensus 615 ~ve 617 (705)
T KOG0639|consen 615 NVE 617 (705)
T ss_pred cEE
Confidence 764
No 138
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.3e-11 Score=106.40 Aligned_cols=147 Identities=14% Similarity=0.247 Sum_probs=115.8
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeecccccc---CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFH---SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
.-++-.+++|+.|.+++.||+.-.. .+.++.+ ++.+ ..+.|.+++++|.|++|++|-.|.+..+||++.+
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~---~v~~l~~-~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--- 263 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNS---CVNTLDN-DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--- 263 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccc---eeeeccC-cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC---
Confidence 3456678899999999999985322 2333321 1111 2478999999999999999999999999999987
Q ss_pred CCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC----CcceeecccccCcEEEEEeecCCCCeEEE
Q 048199 412 PADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT----QQSVMEYEEHEKRAWSVDFSRTEPSMLVS 486 (495)
Q Consensus 412 ~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~----~~~~~~~~~h~~~v~~v~~~~~~g~~l~s 486 (495)
.++.. ..|...|.++.|+|. ..+++++++|..|++-|+.- .-++.....|.+.+-.+.|+| ..--++|
T Consensus 264 -----r~iq~f~phsadir~vrfsp~-a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~-~d~sfis 336 (350)
T KOG0641|consen 264 -----RMIQRFHPHSADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP-QDFSFIS 336 (350)
T ss_pred -----ceeeeeCCCccceeEEEeCCC-ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC-ccceeee
Confidence 34443 468889999999999 89999999999999999863 124455567999999999999 7677889
Q ss_pred eeCCCcEeC
Q 048199 487 GSDDCKVLY 495 (495)
Q Consensus 487 ~s~D~~v~l 495 (495)
.|.|.++.+
T Consensus 337 ssadkt~tl 345 (350)
T KOG0641|consen 337 SSADKTATL 345 (350)
T ss_pred ccCcceEEE
Confidence 999998754
No 139
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.32 E-value=2.5e-12 Score=118.13 Aligned_cols=139 Identities=19% Similarity=0.303 Sum_probs=110.3
Q ss_pred ccCcccchhhHHhhhhhhhcccCce-EEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLR-VIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
.+.++++..|.++.|+|...-.... .+.+++ -..|+|+|.+-.|++|+.|..+..||++.. .
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR----------TN~IswnPeafnF~~a~ED~nlY~~DmR~l-------~ 262 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVILTMR----------TNTICWNPEAFNFVAANEDHNLYTYDMRNL-------S 262 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeeeecc----------ccceecCccccceeeccccccceehhhhhh-------c
Confidence 3556777788999999985433222 333344 458899998889999999999999999986 3
Q ss_pred CCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-cCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 417 CPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-EKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 417 ~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.|+. ..+|.+.|..++|+|. |.-|+|||+|.+|+||.++.+.....+..- -..|.+|.|+- |..+++|||+|+.|+
T Consensus 263 ~p~~v~~dhvsAV~dVdfspt-G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPT-GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccceeEEEeccCCC-cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCccee
Confidence 3333 3468889999999999 999999999999999999977765555322 24689999999 999999999999998
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
|
T Consensus 341 l 341 (433)
T KOG0268|consen 341 L 341 (433)
T ss_pred e
Confidence 6
No 140
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.2e-11 Score=110.38 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=118.3
Q ss_pred hccCCCCcccccccc-ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc
Q 048199 321 MANQPHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR 399 (495)
Q Consensus 321 ~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~ 399 (495)
..+.+|...++.... +-+..+.+++.|.++++||+.. .+...+..+ ..-...+|+|.|-+||.+.....
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-~~cqg~l~~---------~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-KKCQGLLNL---------SGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC-CCCceEEec---------CCCcceeECCCCcEEEEecCCCe
Confidence 345666665555443 4558899999999999999852 222222222 22335689999999999998889
Q ss_pred EEEEEccccc-cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcE---EEEE
Q 048199 400 IKVFDFASVV-NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRA---WSVD 475 (495)
Q Consensus 400 i~vwd~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v---~~v~ 475 (495)
|++||++... ..+. ............+.+.|+|| |.+|+-+...+.+.+.|.-+|....+|.++...- -+.+
T Consensus 164 IkLyD~Rs~dkgPF~---tf~i~~~~~~ew~~l~FS~d-GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFT---TFSITDNDEAEWTDLEFSPD-GKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred EEEEEecccCCCCce---eEccCCCCccceeeeEEcCC-CCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 9999999751 1111 11111134567899999999 8888888899999999999999999998875432 5678
Q ss_pred eecCCCCeEEEeeCCCcEeC
Q 048199 476 FSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 476 ~~~~~g~~l~s~s~D~~v~l 495 (495)
|+| ++.++++|++||+|.+
T Consensus 240 ftP-ds~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 240 FTP-DSKFVLSGSDDGTIHV 258 (311)
T ss_pred ECC-CCcEEEEecCCCcEEE
Confidence 999 9999999999999874
No 141
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.30 E-value=4.8e-12 Score=119.66 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=116.4
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..+++|..|..+.||+.. ....+..+. +|.+.|.+++|-..-+.+++++.|++|++|+++..
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~---t~ehv~~~~-----ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~------- 276 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCD---TLEHVKVFK-----GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL------- 276 (479)
T ss_pred CCCcEEEecCCCceEEEecCc---ccchhhccc-----ccccceeeeeeecCccceeeeecCCceEEEehhHh-------
Confidence 466778899999999999984 334444444 99999999999987888999999999999999986
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
......++|.+.|.++.-... +..+-.|+.|+++++|++. -...-.|.+|.+.+-+++|- |..+++|||+||.|.|
T Consensus 277 s~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIAL 352 (479)
T ss_pred HHHHHHhCCccceeeechhcc-cceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEE
Confidence 344456789999999987766 6677777799999999994 44556788999999999997 5689999999999864
No 142
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.2e-12 Score=113.89 Aligned_cols=57 Identities=28% Similarity=0.786 Sum_probs=51.2
Q ss_pred CCccccccccchhhhccccCCCCccchhhHHhhhcCC---CCCCCCCCcCccCCCcchHH
Q 048199 50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLYPNFL 106 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~~~l~~n~~ 106 (495)
...+.|.||++.-+|||++.|||.||+.||.+|+... ..||+|+..++.+.++|.+.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 4567899999999999999999999999999999865 47999999999988888764
No 143
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=8.4e-12 Score=120.91 Aligned_cols=130 Identities=13% Similarity=0.240 Sum_probs=103.4
Q ss_pred EEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEE
Q 048199 363 VIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRI 441 (495)
Q Consensus 363 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l 441 (495)
..|.++. ++..|.+.|+.+.|+|....|++++.|+++++|++......-.....++. ..+|.++|.|+++.+. +.++
T Consensus 282 k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ 359 (577)
T KOG0642|consen 282 KKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHC 359 (577)
T ss_pred eecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-ceEE
Confidence 3455554 45579999999999999999999999999999999442111111123333 4479999999999998 9999
Q ss_pred EEecCCCcEEEEeCCC----------CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 442 ASSDYEGIVTVWDVTT----------QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 442 ~sg~~dg~v~iwd~~~----------~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++|+-||+|+.|++.. ......|.||++.||.+++++ ..+.|+++|.||+|++
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~ 422 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRL 422 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEe
Confidence 9999999999995531 134567889999999999999 8889999999999984
No 144
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.28 E-value=2.2e-11 Score=115.27 Aligned_cols=120 Identities=21% Similarity=0.230 Sum_probs=103.7
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC---CCC------cCCCeee--cCCCCCeEEEEEcCCCCCEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE---PAD------VHCPVVE--MPTRSKLSCLSWNKFSKNRIA 442 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~---~~~------~~~~~~~--~~~~~~i~~~~~~p~~~~~l~ 442 (495)
.|.-.|.+++++|++.+.++++.|++|.-|++.+++.. ... +..+... ..|...+.+++.++| +.+|+
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D-gkyla 218 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD-GKYLA 218 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-CcEEE
Confidence 68889999999999999999999999999999988432 111 1112211 267778999999999 99999
Q ss_pred EecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 443 SSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 443 sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+|+.|..|.|||..+++.++.|.+|.+.|.+++|-. ...-|+++|.|++|+|
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKV 270 (479)
T ss_pred ecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEE
Confidence 999999999999999999999999999999999998 8889999999999985
No 145
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.28 E-value=1.2e-11 Score=122.50 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=100.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
...+++++++|...++++++.|+.|+|||+.+++.. +.......|.+.+..+...|. +.||++.+.|.++.++|.
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~----k~FKgs~~~eG~lIKv~lDPS-giY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV----KSFKGSRDHEGDLIKVILDPS-GIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEecccccee----eeecccccCCCceEEEEECCC-ccEEEEeecCCceEEEEe
Confidence 357899999999999999999999999999998221 111222356677889999999 999999999999999999
Q ss_pred CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+|+++.+..||...|+.+.|.+ |.++|+|.+.||+|.|
T Consensus 671 ~sgEcvA~m~GHsE~VTG~kF~n-DCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 671 VSGECVAQMTGHSEAVTGVKFLN-DCKHLISVSGDGCIFV 709 (1080)
T ss_pred ccchhhhhhcCcchheeeeeecc-cchhheeecCCceEEE
Confidence 99999999999999999999999 9999999999999864
No 146
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.6e-11 Score=107.28 Aligned_cols=110 Identities=11% Similarity=0.244 Sum_probs=87.7
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
||...|.+|+.+|-+..|++++.|++||+||++.. .+.... +...-..++|.|. |.++|.|.....|++|
T Consensus 98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-------~cqg~l--~~~~~pi~AfDp~-GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-------KCQGLL--NLSGRPIAAFDPE-GLIFALANGSELIKLY 167 (311)
T ss_pred CCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-------CCceEE--ecCCCcceeECCC-CcEEEEecCCCeEEEE
Confidence 99999999999999999999999999999999975 232222 1222346899999 9999999988899999
Q ss_pred eCCC--Ccceeecc---cccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 454 DVTT--QQSVMEYE---EHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 454 d~~~--~~~~~~~~---~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
|+++ ..+..+|. +-....+.+.|+| ||++|+-+...+.++
T Consensus 168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIY 212 (311)
T ss_pred EecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEE
Confidence 9986 34555554 2356788999999 999888877777665
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.27 E-value=2.6e-11 Score=110.19 Aligned_cols=113 Identities=18% Similarity=0.265 Sum_probs=98.0
Q ss_pred CCCcEEEEEEcc---C-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199 375 SANIVSSIEFDR---D-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV 450 (495)
Q Consensus 375 h~~~V~~l~~~p---~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v 450 (495)
|....+.++|.- + ..++|.||.-|.|+|.|+..+ .......+|...|+.+.|+|+..++++++|.|.+|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh-------hhccceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 556666777754 2 348888999999999999987 34455668999999999999988999999999999
Q ss_pred EEEeCCCCcceeecc---cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 451 TVWDVTTQQSVMEYE---EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++||+++..++..|. ||.+.|.+++|+. +|.+|+|++.|..+++
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~ 207 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKL 207 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEE
Confidence 999999999998875 6999999999999 9999999999999874
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=6e-11 Score=106.97 Aligned_cols=119 Identities=15% Similarity=0.242 Sum_probs=95.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEE-cCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW-NKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~p~~~~~l~sg~~dg~v~i 452 (495)
+|.+-|.++.|++.|+.++||+.|++|+|||....... .........|.+.|+.+.| ||.-|..+|++++|+++.|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~---W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT---WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc---eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 78999999999999999999999999999998654111 1222333468899999999 6666899999999999999
Q ss_pred EeCC--C----C---cceeecccccCcEEEEEeecC-CCCeEEEeeCCCcEeC
Q 048199 453 WDVT--T----Q---QSVMEYEEHEKRAWSVDFSRT-EPSMLVSGSDDCKVLY 495 (495)
Q Consensus 453 wd~~--~----~---~~~~~~~~h~~~v~~v~~~~~-~g~~l~s~s~D~~v~l 495 (495)
|.=. + + ....++......|+.|.|.|. -|-.||+++.||.|||
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI 140 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI 140 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence 9741 1 1 235567777889999999983 3568999999999986
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=2.3e-11 Score=111.17 Aligned_cols=140 Identities=20% Similarity=0.318 Sum_probs=101.4
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
++.+..-+++++++... ...+..++ +|...+..+.|.. ..+.+.+|+.||+||+||++.... .+
T Consensus 43 vav~lSngsv~lyd~~t---g~~l~~fk-----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e------~a 108 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGT---GQLLEEFK-----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE------SA 108 (376)
T ss_pred EEEEecCCeEEEEeccc---hhhhheec-----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh------hh
Confidence 33444444778887642 22233333 7778888888876 567899999999999999998621 22
Q ss_pred eeecC-CC-CCeEEEEEcCCCCCEEEEec----CCCcEEEEeCCCCcc-eeec-ccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 419 VVEMP-TR-SKLSCLSWNKFSKNRIASSD----YEGIVTVWDVTTQQS-VMEY-EEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 419 ~~~~~-~~-~~i~~~~~~p~~~~~l~sg~----~dg~v~iwd~~~~~~-~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
+..+. +. .+..+++.+-. +++|++|. .|..|.+||+|.... +..+ ..|.+.|++|.|+|.++.+|+|||-|
T Consensus 109 ~~~~~~~~~~~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 109 RISWTQQSGTPFICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred heeccCCCCCcceEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 33332 22 35677777655 77888886 466799999997654 5544 57999999999999999999999999
Q ss_pred CcEeC
Q 048199 491 CKVLY 495 (495)
Q Consensus 491 ~~v~l 495 (495)
|.|.|
T Consensus 188 GLvnl 192 (376)
T KOG1188|consen 188 GLVNL 192 (376)
T ss_pred ceEEe
Confidence 98864
No 150
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.25 E-value=1.6e-11 Score=118.20 Aligned_cols=95 Identities=21% Similarity=0.363 Sum_probs=83.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
.+.|..++|+|||.+||+.|.|+.+||||+.+. .-.-......+.+.|++|+|| +.+|++|+.|-.|.||.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-------eLlg~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-------ELLGVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHH-------HHHHHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEe
Confidence 468999999999999999999999999999986 111122245678999999999 999999999999999999
Q ss_pred CCCcceeecccccCcEEEEEeec
Q 048199 456 TTQQSVMEYEEHEKRAWSVDFSR 478 (495)
Q Consensus 456 ~~~~~~~~~~~h~~~v~~v~~~~ 478 (495)
..++.++.-+||..||..|+|.|
T Consensus 362 ~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEeccccccceeeEeecc
Confidence 99999999999999999999975
No 151
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.25 E-value=2.2e-12 Score=87.51 Aligned_cols=47 Identities=36% Similarity=0.879 Sum_probs=41.5
Q ss_pred CccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCc
Q 048199 51 KDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
|+..|+||++.+.+++.+||||. ||..|+.+|+.....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35689999999999999999999 999999999998899999999874
No 152
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=6.8e-11 Score=106.74 Aligned_cols=108 Identities=16% Similarity=0.280 Sum_probs=93.7
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
...|+++.|+|.++.|+.+++||++++||+... .....+.|..++.+++|.++ ..+++|+.||.|+.+|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDL 82 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhhheecCCceeeeeccCC--ceEEEeccCceEEEEEe
Confidence 577999999999998889999999999999886 44456678899999999975 58899999999999999
Q ss_pred CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.++.. ..+..|...|.+|.+++ ....+++||+|++|++
T Consensus 83 n~~~~-~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~ 120 (323)
T KOG1036|consen 83 NTGNE-DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKF 120 (323)
T ss_pred cCCcc-eeeccCCCceEEEEeec-cCCeEEEcccCccEEE
Confidence 87654 44556999999999998 6678999999999985
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.24 E-value=1e-11 Score=121.57 Aligned_cols=145 Identities=15% Similarity=0.156 Sum_probs=107.8
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
+...++.+.+|..|+||.+...+-.+.. .-..+.+..|...|++|.||| -.++|++++.|.+|++||+.++
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~-~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~------- 710 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENE-MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA------- 710 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCccc-CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-------
Confidence 3466788999999999998643222211 112234448999999999999 5779999999999999999997
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeecccc-cCcEEEEEeecCCCCeEEEeeCCC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEYEEH-EKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~~~h-~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
.......+|.+.|..++|+|+ |..+++-+.||+|+||.-+++. .++.-.+- ..+--.|-|.- +|.+++..+.|.
T Consensus 711 ~~~~~l~gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk 786 (1012)
T KOG1445|consen 711 KLYSRLVGHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDK 786 (1012)
T ss_pred hhhheeccCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccc
Confidence 333455689999999999999 9999999999999999988753 33333222 12223455666 888888887775
No 154
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.23 E-value=1.3e-11 Score=108.86 Aligned_cols=147 Identities=12% Similarity=0.147 Sum_probs=113.8
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeecc-----ccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHG-----DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~-----~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
+..|-.++.+.+||+..-++ +..++.. ....|...|.++.|.+....=++|+.+..+..|+++.....+.
T Consensus 168 llaGyEsghvv~wd~S~~~~---~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq-- 242 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDK---IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ-- 242 (323)
T ss_pred EEEeccCCeEEEEEccCCce---eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc--
Confidence 45677778999999864321 2222211 1125899999999998766678999999999999987522211
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
-.......+..+..+.+-|| +.++||+++|+.|+||..+++.+++.+.-|...|++++|+| +..++|++|.|++|-+
T Consensus 243 -~~~e~~lknpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 243 -IRKEITLKNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISL 319 (323)
T ss_pred -ccceEEecCCCccceEEccC-CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEe
Confidence 01111123446889999999 99999999999999999999999999999999999999999 8899999999999854
No 155
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.23 E-value=1.9e-12 Score=85.37 Aligned_cols=40 Identities=35% Similarity=0.937 Sum_probs=35.5
Q ss_pred ccccccchhhh---ccccCCCCccchhhHHhhhcCCCCCCCCC
Q 048199 54 LCPICMQIIKE---AFLTACGHSFCYMCIITHLRNKSDCPCCG 93 (495)
Q Consensus 54 ~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr 93 (495)
.|+||++.|.+ ++.++|||.||..||.+|+....+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 59999999963 46889999999999999999999999997
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.22 E-value=5.2e-11 Score=117.98 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=97.7
Q ss_pred ccccCCCcEEEEEEccCCCEEEEEeCCCc-----EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec
Q 048199 371 DIFHSANIVSSIEFDRDDQLFATAGVSRR-----IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD 445 (495)
Q Consensus 371 ~~~~h~~~V~~l~~~p~~~~l~s~s~d~~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~ 445 (495)
+++||...|++++.+|+++++||++.... |++|+..+. ........|.-.|+.++|+|| +.+|++.+
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-------~~~~~L~~HsLTVT~l~FSpd-g~~LLsvs 591 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-------LQVQELEGHSLTVTRLAFSPD-GRYLLSVS 591 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-------hhhheecccceEEEEEEECCC-CcEEEEee
Confidence 56699999999999999999999986443 999999886 122234467778999999999 99999999
Q ss_pred CCCcEEEEeCCCC----cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 446 YEGIVTVWDVTTQ----QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 446 ~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.|.++.+|..... ......+.|+..||+.+|+| ++.+++|+|.|.+|++
T Consensus 592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKV 644 (764)
T ss_pred cCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEE
Confidence 9999999987532 22444778999999999999 9999999999999985
No 157
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.21 E-value=4.3e-12 Score=112.56 Aligned_cols=70 Identities=29% Similarity=0.546 Sum_probs=62.5
Q ss_pred ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHh
Q 048199 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTS 115 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~ 115 (495)
+..++..+.|-||-+.|.-|+.++|||+||.-||.+++..++.||+||.+....-++.++.+..+++.+.
T Consensus 19 L~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 19 LKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHA 88 (391)
T ss_pred hhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhh
Confidence 4566777899999999999999999999999999999999999999999988777888888887777664
No 158
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=4.4e-11 Score=115.47 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=124.1
Q ss_pred ccCCCCcccccc-ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCC
Q 048199 322 ANQPHTKQESDK-NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSR 398 (495)
Q Consensus 322 ~~~~~~~~~~~~-~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~ 398 (495)
.+.+|.+.++.. +..+++.+++|++|..+.||+.. ..+.+..+.+ ||+..|.++.|-| +..+++||+.|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~---~~KllhsI~T----gHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF---EYKLLHSIST----GHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecch---hcceeeeeec----ccccceeEEeeeccCCCeEEEeccCcc
Confidence 345677766664 45688999999999999999985 4466888887 8999999999999 566899999999
Q ss_pred cEEEEEccccccCCCC--cCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-c---------eeecc
Q 048199 399 RIKVFDFASVVNEPAD--VHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-S---------VMEYE 465 (495)
Q Consensus 399 ~i~vwd~~~~~~~~~~--~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~---------~~~~~ 465 (495)
.|++||+......-.+ ...+...+ .|...|-.++--|++.+.|.+++.||+|+-+|++... + +..+.
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999863111100 11122222 4667788888889867999999999999999998521 1 11122
Q ss_pred cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 466 EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 466 ~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..--...++.++|.++++|+.|+.|-.++|
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarL 227 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARL 227 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhh
Confidence 223346788999989999999998876553
No 159
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=5.2e-11 Score=114.93 Aligned_cols=118 Identities=14% Similarity=0.266 Sum_probs=99.1
Q ss_pred ccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCc
Q 048199 371 DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGI 449 (495)
Q Consensus 371 ~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~ 449 (495)
++.||++.|.++.|+.+|.+|++||.|-.+.|||.-..+ ..-....+|...|.++.|-|. +..+++||..|..
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K------llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK------LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcc------eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 455999999999999999999999999999999988541 112344578899999999987 4568899999999
Q ss_pred EEEEeCCC----------CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 450 VTVWDVTT----------QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 450 v~iwd~~~----------~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
|++||+.. ......+..|..+|..++-.|.++..+.++|.||+|+
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCccee
Confidence 99999974 2345667789999999999995558999999999986
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.19 E-value=5.9e-11 Score=113.25 Aligned_cols=139 Identities=16% Similarity=0.205 Sum_probs=113.1
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV 420 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 420 (495)
..+|+....|+|||+.+. .....++ +|++.|+++.++-.+.+||+++..|-|.|..+.++ ....
T Consensus 94 ~~sgG~~~~Vkiwdl~~k---l~hr~lk-----dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~--------~~tt 157 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAK---LIHRFLK-----DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK--------QKTT 157 (673)
T ss_pred eeccCcCceeeehhhHHH---HHhhhcc-----CCcceeEEEEecCCcceeEEeccCCcEEEEecccC--------cccc
Confidence 356777779999999631 2233334 89999999999999999999999999999999987 2223
Q ss_pred ecCCC--CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-ccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 421 EMPTR--SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 421 ~~~~~--~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+.+. ..+.-+.|+|....+|.+++++|.|.+||+....+...+ ..|..+...|+|+|.+..+|+|.+.|..|.+
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 33333 346789999997788999999999999999877776554 5699999999999999999999999998864
No 161
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.4e-12 Score=112.15 Aligned_cols=51 Identities=27% Similarity=0.785 Sum_probs=46.8
Q ss_pred CccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCC
Q 048199 51 KDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQL 101 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 101 (495)
....|.||++...+|-.+||||.||..||..|......||.||+++.+.++
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 347899999999999999999999999999999999999999999987554
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.9e-11 Score=127.52 Aligned_cols=142 Identities=20% Similarity=0.334 Sum_probs=109.6
Q ss_pred cccchhhHHhhhhhhhcccC---ceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 341 YNAGLADFQSVLTTFTRYSR---LRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~---~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
++.|.+|+.|.+|+...... ...+.+.. .|++.|..+.|++ .+++|++|+.||.|.|||+......+.
T Consensus 83 IaGG~edG~I~ly~p~~~~~~~~~~~la~~~-----~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~--- 154 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIANASEEVLATKS-----KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT--- 154 (1049)
T ss_pred eeccccCCceEEecchhhccCcchHHHhhhc-----ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC---
Confidence 56788999999999865311 12222222 6999999999999 456999999999999999998522211
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccC--cEEEEEeecCCCCeEEEeeCCCc
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEK--RAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
+ ......+.|.+++|+....++|++|+.+|.+.|||++..+.+-.+..|.. .+..|+|+|.+-+.|+++++|..
T Consensus 155 -~-~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~ 230 (1049)
T KOG0307|consen 155 -P-GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS 230 (1049)
T ss_pred -C-CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC
Confidence 1 12334567999999988788999999999999999998888888877654 47889999966778888887653
No 163
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=105.38 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=98.3
Q ss_pred Hhhhhhhh--cccC---ceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC----CCe
Q 048199 349 QSVLTTFT--RYSR---LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH----CPV 419 (495)
Q Consensus 349 ~~~lw~~~--~~~~---~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~----~~~ 419 (495)
-|++|.+. +-.. ...+..++ ||.+.|.+++|+|+...++|.|.||+|||||++-.+..-.+.. .+.
T Consensus 251 DVkVwE~~f~kdG~fqev~rvf~Lk-----GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~ 325 (420)
T KOG2096|consen 251 DVKVWEPIFTKDGTFQEVKRVFSLK-----GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA 325 (420)
T ss_pred CceEEEEEeccCcchhhhhhhheec-----cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc
Confidence 47788752 2122 22334444 9999999999999999999999999999999986522111100 011
Q ss_pred eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..-...+....+..+|. +..|+.+. ..++++|..++|.....+. .|...|.+++|++ +|.+++|++ |+.|++
T Consensus 326 pl~aag~~p~RL~lsP~-g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 326 PLHAAGSEPVRLELSPS-GDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRV 398 (420)
T ss_pred chhhcCCCceEEEeCCC-CcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeee
Confidence 11122334458999999 87777654 5689999999998877775 4899999999999 999999987 555543
No 164
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.5e-10 Score=104.65 Aligned_cols=97 Identities=12% Similarity=0.341 Sum_probs=82.9
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC
Q 048199 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ 458 (495)
Q Consensus 379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~ 458 (495)
-.++.|++.|.+||.|+.||.|-|||+.+. .-.....+|-.+|.+++|++| |..|+|+|.|..|++||+..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------~iar~lsaH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-------RIARMLSAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-------chhhhhhccccceeEEEecCC-CCEeeeecCCceeEEEeccCC
Confidence 678999999999999999999999999986 112233367889999999999 999999999999999999999
Q ss_pred cceeecccccCcEEEEEeecCCCCeE
Q 048199 459 QSVMEYEEHEKRAWSVDFSRTEPSML 484 (495)
Q Consensus 459 ~~~~~~~~h~~~v~~v~~~~~~g~~l 484 (495)
.+++.+. ...+||.+.|+|.+-+..
T Consensus 98 s~l~rir-f~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 98 SPLKRIR-FDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred CceeEEE-ccCccceeeeccccCCeE
Confidence 9998886 577999999998544433
No 165
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.17 E-value=6.9e-12 Score=80.51 Aligned_cols=35 Identities=34% Similarity=0.990 Sum_probs=22.9
Q ss_pred cccccchhhh----ccccCCCCccchhhHHhhhcCC----CCCC
Q 048199 55 CPICMQIIKE----AFLTACGHSFCYMCIITHLRNK----SDCP 90 (495)
Q Consensus 55 C~IC~~~~~~----Pv~l~CGH~FC~~Ci~~~~~~~----~~CP 90 (495)
||||.+ |.+ |+.|+|||+||+.||++++... .+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 988 9999999999999999998843 4787
No 166
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=1.3e-10 Score=110.30 Aligned_cols=120 Identities=12% Similarity=0.227 Sum_probs=97.8
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC-cCCCeeec-CCCCCeEEEEEcCC-CCCEEEEecCCCcE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD-VHCPVVEM-PTRSKLSCLSWNKF-SKNRIASSDYEGIV 450 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~~~-~~~~~i~~~~~~p~-~~~~l~sg~~dg~v 450 (495)
.|-..|+++.|+.||.+|+|||.||.|.+|++..-.....+ ...|...+ .|.-.|+.+...+. ....++|++.|.++
T Consensus 121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 69999999999999999999999999999998765333322 22344444 46667888876544 25689999999999
Q ss_pred EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++||+..|..+.++. ....+.+++..| .+..++.|+.+|.|.+
T Consensus 201 k~wdlS~g~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 201 KLWDLSLGVLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQ 243 (476)
T ss_pred EEEEeccceeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEe
Confidence 999999999888876 466899999999 8899999999999863
No 167
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=4.3e-10 Score=101.58 Aligned_cols=154 Identities=12% Similarity=0.151 Sum_probs=101.3
Q ss_pred ccccCcccchhhHHhhhhhhhc-ccCceEEEEeeccccccCCCcEEEEEEc-c-CCCEEEEEeCCCcEEEEEccccccCC
Q 048199 336 IHREGYNAGLADFQSVLTTFTR-YSRLRVIAELRHGDIFHSANIVSSIEFD-R-DDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~~-p-~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
..+.++++++.|.+++||++.. .+.......-+ .|.+.|+.+.|- | -|+.+|+++.|++++||.-.......
T Consensus 23 ~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-----ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~ 97 (361)
T KOG2445|consen 23 FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-----AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA 97 (361)
T ss_pred ccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-----ecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc
Confidence 4567788999999999999632 22233333333 689999999995 5 69999999999999999874220000
Q ss_pred CC--cCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEEeCCC--------------------------------
Q 048199 413 AD--VHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVWDVTT-------------------------------- 457 (495)
Q Consensus 413 ~~--~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iwd~~~-------------------------------- 457 (495)
.+ ...........+.|+.+.|.|. -|..+++++.||+|+||+...
T Consensus 98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 98 HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 00 0011122234456777777765 255667777777777774211
Q ss_pred -------------------------------C----cceeecccccCcEEEEEeecCCC---CeEEEeeCCCcEeC
Q 048199 458 -------------------------------Q----QSVMEYEEHEKRAWSVDFSRTEP---SMLVSGSDDCKVLY 495 (495)
Q Consensus 458 -------------------------------~----~~~~~~~~h~~~v~~v~~~~~~g---~~l~s~s~D~~v~l 495 (495)
+ ..+.++.+|+++|++++|.|.-| .+||+++.|| |+|
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 0 12344457889999999998433 3689999998 764
No 168
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.17 E-value=1.6e-11 Score=123.66 Aligned_cols=111 Identities=20% Similarity=0.302 Sum_probs=99.9
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
+.||...|+|+.|+..|.++++|+.|..+|||...+. .+.....+|.+.|+.++.+.. ...+++++.|..|+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-------~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-------RCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIR 257 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccch-------hhhccCCCCccccchhccchh-hhhhhhcccCceEE
Confidence 4489999999999999999999999999999998887 344455688899999998877 78999999999999
Q ss_pred EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+|-+..+.++..+.||++.|++++|+| ..+.+.||++++
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~ 296 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRI 296 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCc-----cccCCCCCceEe
Confidence 999999999999999999999999999 448889999875
No 169
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=2.8e-10 Score=102.86 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=108.9
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
-.+.+.....+|.-|+.|+++|+.. +. ... +..|..+|++|.+.+....+++||.|++|++||.+..
T Consensus 60 c~F~d~~~~~~G~~dg~vr~~Dln~-~~---~~~-----igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~---- 126 (323)
T KOG1036|consen 60 CAFADESTIVTGGLDGQVRRYDLNT-GN---EDQ-----IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK---- 126 (323)
T ss_pred eeccCCceEEEeccCceEEEEEecC-Cc---cee-----eccCCCceEEEEeeccCCeEEEcccCccEEEEecccc----
Confidence 3344556677888888888888742 11 111 1258999999999998889999999999999999974
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc--ccCcEEEEEeecCCCCeEEEeeCC
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
..+..+....+|.++..+ ++.|+.|+.|..|.+||+++.....+... -.-.+.+|++.| ++.-++.+|-|
T Consensus 127 ----~~~~~~d~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSie 198 (323)
T KOG1036|consen 127 ----VVVGTFDQGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIE 198 (323)
T ss_pred ----ccccccccCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeec
Confidence 444555555689999988 77999999999999999998654433222 245789999999 88888999999
Q ss_pred CcEeC
Q 048199 491 CKVLY 495 (495)
Q Consensus 491 ~~v~l 495 (495)
|.|.+
T Consensus 199 GRVav 203 (323)
T KOG1036|consen 199 GRVAV 203 (323)
T ss_pred ceEEE
Confidence 99864
No 170
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.16 E-value=1.1e-11 Score=80.40 Aligned_cols=38 Identities=42% Similarity=1.135 Sum_probs=35.4
Q ss_pred cccccchhhhcc-ccCCCCccchhhHHhhhc--CCCCCCCC
Q 048199 55 CPICMQIIKEAF-LTACGHSFCYMCIITHLR--NKSDCPCC 92 (495)
Q Consensus 55 C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~--~~~~CP~C 92 (495)
|+||++.+.+|+ +++|||.||..||.+|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 45689988
No 171
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.15 E-value=1.9e-11 Score=109.83 Aligned_cols=48 Identities=35% Similarity=0.841 Sum_probs=42.0
Q ss_pred CCccccccccchhhhc--------cccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 50 DKDMLCPICMQIIKEA--------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~P--------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
.++..|+||++.+.++ +.++|||.||..||.+|+....+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 4567899999988764 45689999999999999999899999999875
No 172
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.15 E-value=9.5e-10 Score=98.35 Aligned_cols=101 Identities=15% Similarity=0.394 Sum_probs=80.2
Q ss_pred CCcEEEEEEccCCCEEEE--EeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---CCcE
Q 048199 376 ANIVSSIEFDRDDQLFAT--AGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---EGIV 450 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s--~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---dg~v 450 (495)
.+.|.+++|+|+|+.|+. |..++.|.+||++. .++..+. ...++.+.|+|+ |.+|+.|+. .|.|
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------~~i~~~~-~~~~n~i~wsP~-G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------KKIFSFG-TQPRNTISWSPD-GRFLVLAGFGNLNGDL 127 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------cEeEeec-CCCceEEEECCC-CCEEEEEEccCCCcEE
Confidence 457999999999998654 44678999999973 2334443 456789999999 888888764 4679
Q ss_pred EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
.+||+++...+..+. |. .+..++|+| +|.+|++++..
T Consensus 128 ~~wd~~~~~~i~~~~-~~-~~t~~~WsP-dGr~~~ta~t~ 164 (194)
T PF08662_consen 128 EFWDVRKKKKISTFE-HS-DATDVEWSP-DGRYLATATTS 164 (194)
T ss_pred EEEECCCCEEeeccc-cC-cEEEEEEcC-CCCEEEEEEec
Confidence 999999888888775 33 478999999 99999998753
No 173
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=2.9e-10 Score=112.56 Aligned_cols=117 Identities=16% Similarity=0.220 Sum_probs=94.0
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
..++.|.+++|+|++..+++|+.||.|++||...+.... -+...+.... ...-||++.|-.+ ..|++|+.-|+|+
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVT 228 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-EeeecccccccCCceEEEEEEEeec--CcEEEecCCceEE
Confidence 347899999999999999999999999999999871100 0000000111 1224899998855 5899999999999
Q ss_pred EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+||...|..++++..|...|.+++.++ ++.++++++.|+.|-
T Consensus 229 FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d~vfsaGvd~~ii 270 (691)
T KOG2048|consen 229 FWDSIFGTLIQSHSCHDADVLALAVAD-NEDRVFSAGVDPKII 270 (691)
T ss_pred EEcccCcchhhhhhhhhcceeEEEEcC-CCCeEEEccCCCceE
Confidence 999999999999999999999999998 889999999999863
No 174
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.1e-10 Score=111.89 Aligned_cols=72 Identities=31% Similarity=0.760 Sum_probs=62.1
Q ss_pred ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHh
Q 048199 44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSAR 117 (495)
Q Consensus 44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~ 117 (495)
..+..+.+++.|+||++.|++|++++|||+||+.||..++.....||.||. ... .+.+|+.+.++++.+...
T Consensus 5 ~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 5 ALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVERLRQL 76 (386)
T ss_pred hhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHHHHhc
Confidence 344667889999999999999999999999999999999985568999996 332 788999999999988754
No 175
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.13 E-value=1.1e-10 Score=114.72 Aligned_cols=147 Identities=12% Similarity=0.180 Sum_probs=105.2
Q ss_pred CcccchhhHHhhhhhhhcccCce-EEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLR-VIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
.++.+.+|+.|.+++..++. ++ .-..+ ...+.|...|.++.|-|....|++++.|.++++||+... .+...
T Consensus 66 iLavadE~G~i~l~dt~~~~-fr~ee~~l--k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-----~l~G~ 137 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIV-FRLEERQL--KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-----RLVGG 137 (720)
T ss_pred eEEEecCCCceeeecchhhh-cchhhhhh--cccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-----eeecc
Confidence 35667777888888865432 11 01111 123469999999999997679999999999999999986 12222
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--------------------cee-------ecccccCcE
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--------------------SVM-------EYEEHEKRA 471 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--------------------~~~-------~~~~h~~~v 471 (495)
...++|.+.+-+++|.|.+...|++|+.||.|.|||++-.. +.. .-..|...|
T Consensus 138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence 24678999999999999999999999999999999986321 000 111233334
Q ss_pred EE---EEeecCCCCeEEEeeC-CCcEeC
Q 048199 472 WS---VDFSRTEPSMLVSGSD-DCKVLY 495 (495)
Q Consensus 472 ~~---v~~~~~~g~~l~s~s~-D~~v~l 495 (495)
.+ +-+.. |..+|||+|. |+.|||
T Consensus 218 ~ssvTvv~fk-De~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 218 FSSVTVVLFK-DESTLASAGAADSTIKV 244 (720)
T ss_pred eeeeEEEEEe-ccceeeeccCCCcceEE
Confidence 43 44444 7789999998 999985
No 176
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.12 E-value=1.8e-10 Score=116.44 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=101.9
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
-..|.++|++++.+..++.+++++.+|.+++||+... .......-...+.++.+|.. ...++.+..|-.|.
T Consensus 489 ~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k--------~l~~~l~l~~~~~~iv~hr~-s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 489 SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK--------VLKKSLRLGSSITGIVYHRV-SDLLAIALDDFSIR 559 (910)
T ss_pred CccccCceeEEEecCCCceEEEccCcceEEEEecCCc--------ceeeeeccCCCcceeeeeeh-hhhhhhhcCceeEE
Confidence 3469999999999999999999999999999999986 34444445566788888888 77899999999999
Q ss_pred EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++|+-+.+.++.|.||.+.|++++||| ||++|++++.|++||+
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRT 602 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEE
Confidence 999999999999999999999999999 9999999999999984
No 177
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.7e-10 Score=108.45 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=112.5
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--C
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--P 412 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~ 412 (495)
..+++.+.+|..|+++++|++.+. ..+.. ...|.+.|.++.|+|||++|++-+.| ..+||+++++... .
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~---~t~l~-----e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSM---LTILE-----EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcc---hhhhh-----hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 345678899999999999996432 11222 22688999999999999999999999 9999999887110 0
Q ss_pred C---------------CcCCCe-------------ee-----c------------CCCCCeEEEEEcCCCCCEEEEecCC
Q 048199 413 A---------------DVHCPV-------------VE-----M------------PTRSKLSCLSWNKFSKNRIASSDYE 447 (495)
Q Consensus 413 ~---------------~~~~~~-------------~~-----~------------~~~~~i~~~~~~p~~~~~l~sg~~d 447 (495)
. ....+. .. . .....|++++.+++ |.+++-|+.|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d-Gkf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD-GKFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC-CcEEEEeccC
Confidence 0 000000 00 0 01236889999999 9999999999
Q ss_pred CcEEEEeCCCCcceeec-ccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 448 GIVTVWDVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 448 g~v~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
|.|-|++..+.+.++-+ +.|...|+.|.|+| +.+++++.|.|....
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAA 349 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCcee
Confidence 99999999988877665 46999999999999 989999888887654
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.1e-10 Score=122.03 Aligned_cols=143 Identities=17% Similarity=0.253 Sum_probs=115.4
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCC---cEEEEEccccccCCCCc
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSR---RIKVFDFASVVNEPADV 415 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~---~i~vwd~~~~~~~~~~~ 415 (495)
.+++|+.++.+.|||+.+. +++..+... +....+..|+|||+.. .+++++.|. .|.+||++..
T Consensus 176 ILAS~s~sg~~~iWDlr~~---~pii~ls~~---~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a------- 242 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKK---KPIIKLSDT---PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA------- 242 (1049)
T ss_pred HhhccCCCCCceeccccCC---CcccccccC---CCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-------
Confidence 3567777779999999543 344444431 2235688999999644 666776654 5999999876
Q ss_pred CCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 416 HCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 416 ~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
..++..+ +|..+|.++.|.+.+..+++|++.|+.|.+|+.++|+.+..+....+|+..+.|+|.++..++.++.||.|-
T Consensus 243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 4555555 788899999999987799999999999999999999999999998999999999998888999999999985
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
|
T Consensus 323 I 323 (1049)
T KOG0307|consen 323 I 323 (1049)
T ss_pred e
Confidence 4
No 179
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.11 E-value=1.4e-10 Score=117.15 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=110.2
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
..+++++.++-++.|++.. ...+..++- ...+..+..|....+|+.+..|-.|+++|+.+. ..
T Consensus 506 ~~~vsa~~~Gilkfw~f~~---k~l~~~l~l------~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~--------kv 568 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKK---KVLKKSLRL------GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR--------KV 568 (910)
T ss_pred ceEEEccCcceEEEEecCC---cceeeeecc------CCCcceeeeeehhhhhhhhcCceeEEEEEchhh--------hh
Confidence 3367888888999999842 234444443 356778888998999999999999999999986 33
Q ss_pred ee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 419 VV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 419 ~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
+. ..+|.++|+.++|+|| |..|++++.|++|++||+.++..+-.+. -..++.++.|+| +|.+|||+..|.
T Consensus 569 vR~f~gh~nritd~~FS~D-grWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP-ngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPD-GRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP-NGDFLATVHVDQ 639 (910)
T ss_pred hHHhhccccceeeeEeCCC-CcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC-CCCEEEEEEecC
Confidence 33 3479999999999999 9999999999999999999999887775 467889999999 999999999873
No 180
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.11 E-value=5.8e-10 Score=106.85 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=92.0
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
+|....+.++.||+.++|+|++.|+.+++|+ .. .+.-...-..+..+++|||. + .++.|...|...+.
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~---------k~~wt~~~~d~~~~~~fhps-g-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH---------KLEWTKIIEDPAECADFHPS-G-VVAVGTATGRWFVL 433 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEcc-CC---------ceeEEEEecCceeEeeccCc-c-eEEEeeccceEEEE
Confidence 6889999999999999999999999999999 22 34444445667899999999 7 99999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|..+...+..-.. ..+++.+.|+| +|.+||.||.|+.|+|
T Consensus 434 d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 434 DTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYI 473 (626)
T ss_pred ecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEE
Confidence 9998544444333 78999999999 9999999999999875
No 181
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.11 E-value=1.7e-10 Score=110.17 Aligned_cols=126 Identities=15% Similarity=0.234 Sum_probs=103.2
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
..+.++++++.|.+||....+ ++..... .|..+..+|+|+| +..+|++.|.|+.|.+||+... .
T Consensus 178 ~lL~~asd~G~VtlwDv~g~s---p~~~~~~----~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~--------~ 242 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMS---PIFHASE----AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ--------A 242 (673)
T ss_pred eeeEeeccCCeEEEEeccCCC---cccchhh----hccCCcCcceecCCccceEEEecccceEEEeecccc--------c
Confidence 346678889999999986332 2222221 6999999999999 4558899999999999999975 3
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEP 481 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g 481 (495)
....+....++..++|.++ |.+|+.|...|.|..||++. ..++..+..|...|++|+|-+ .+
T Consensus 243 s~~~l~y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~-s~ 305 (673)
T KOG4378|consen 243 STDRLTYSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP-SP 305 (673)
T ss_pred ccceeeecCCcceeeecCC-ceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee-cc
Confidence 3444556678999999999 99999999999999999985 578999999999999999988 54
No 182
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=7.8e-10 Score=113.11 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=115.3
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
....+.+|+.+.+|.++.+........+..+ +-++++++|+-+|++++.||.|-.|++-+.... .
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf--------tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-------s 129 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARF--------TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-------S 129 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeee--------eccceEEEEecCCcEEEeecCceeEEEEecccc-------c
Confidence 3456889999999999988654433233333 456999999999999999999999999999886 3
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc--------cCcEEEEEeecCCCCeEEEee
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH--------EKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h--------~~~v~~v~~~~~~g~~l~s~s 488 (495)
......+|.++|.++.|+|. +++||+.+.||.|+|||+.++.+..++.+- ...+..++|+| +|..|+..+
T Consensus 130 ~~~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~ 207 (933)
T KOG1274|consen 130 QEKVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPP 207 (933)
T ss_pred hheeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeec
Confidence 44566689999999999999 999999999999999999988877666541 45677889999 877777778
Q ss_pred CCCcEeC
Q 048199 489 DDCKVLY 495 (495)
Q Consensus 489 ~D~~v~l 495 (495)
.|++|++
T Consensus 208 ~d~~Vkv 214 (933)
T KOG1274|consen 208 VDNTVKV 214 (933)
T ss_pred cCCeEEE
Confidence 8888874
No 183
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.08 E-value=2.3e-10 Score=113.71 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=109.2
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-C----------CCEEEEEeCCCcEEEEEccccc
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-D----------DQLFATAGVSRRIKVFDFASVV 409 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~----------~~~l~s~s~d~~i~vwd~~~~~ 409 (495)
+.---+|.++.|||+....+......+ +.|...||++.--| + ...|+|++.|++||+||+....
T Consensus 339 lscVYndhSlYvWDvrD~~kvgk~~s~-----lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct 413 (1080)
T KOG1408|consen 339 LSCVYNDHSLYVWDVRDVNKVGKCSSM-----LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT 413 (1080)
T ss_pred EEEEEcCceEEEEeccccccccceeee-----eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc
Confidence 333456778999998755544333333 36889999988666 1 2368999999999999998731
Q ss_pred cC-------CC---------CcC--------------CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199 410 NE-------PA---------DVH--------------CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ 459 (495)
Q Consensus 410 ~~-------~~---------~~~--------------~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~ 459 (495)
+. +. +.. ..+.......++.+++.+|+ +.+|++|+.-|.++|||+...+
T Consensus 414 nn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 414 NNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELE 492 (1080)
T ss_pred ccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceecccCccCceEEEEehhhh
Confidence 10 00 000 00111123346899999999 9999999999999999999999
Q ss_pred ceeecccccCcEEEEEeecC--CCCeEEEeeCCCcEeC
Q 048199 460 SVMEYEEHEKRAWSVDFSRT--EPSMLVSGSDDCKVLY 495 (495)
Q Consensus 460 ~~~~~~~h~~~v~~v~~~~~--~g~~l~s~s~D~~v~l 495 (495)
....+..|+..|.++.|+.. ...+|||+|.|+.|.|
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred hhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 99999999999999999842 2468999999998864
No 184
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.06 E-value=5.6e-10 Score=104.35 Aligned_cols=118 Identities=20% Similarity=0.273 Sum_probs=93.4
Q ss_pred CCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCC--CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 376 ANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPA--DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 376 ~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
..+|.++.|+++.. .|+|||.|..|++|-+......-. .+........|...|+.+.|+|+ |.+|+||+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEE
Confidence 46899999998655 999999999999999987622211 11111222367888999999999 999999999999999
Q ss_pred EeCC--------C-----C---cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 453 WDVT--------T-----Q---QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 453 wd~~--------~-----~---~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|-.. + . .....+.+|...|+.++|+| ++.++++++.|..+++
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRL 149 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEE
Confidence 9654 2 1 12456678999999999999 9999999999998764
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.06 E-value=1.5e-09 Score=100.43 Aligned_cols=131 Identities=16% Similarity=0.293 Sum_probs=101.0
Q ss_pred hhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe--CCCcEEEEEccccccCCCCcCCCeeec-CCCC
Q 048199 350 SVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG--VSRRIKVFDFASVVNEPADVHCPVVEM-PTRS 426 (495)
Q Consensus 350 ~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~ 426 (495)
+.|+|+. ..+.+.++.+. ..|...+.++++++.+.+++.-+ ..|.|.|||+.+- .++..+ .|.+
T Consensus 108 IyIydI~---~MklLhTI~t~--~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--------~~v~~I~aH~~ 174 (391)
T KOG2110|consen 108 IYIYDIK---DMKLLHTIETT--PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--------QPVNTINAHKG 174 (391)
T ss_pred EEEEecc---cceeehhhhcc--CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--------eeeeEEEecCC
Confidence 5566663 22334444321 03455688888888888888643 3588999999986 444444 6899
Q ss_pred CeEEEEEcCCCCCEEEEecCCCc-EEEEeCCCCcceeecccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 427 KLSCLSWNKFSKNRIASSDYEGI-VTVWDVTTQQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 427 ~i~~~~~~p~~~~~l~sg~~dg~-v~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+-+++|+++ |.+|||++..|+ |+||++.+|+.+..|..- .-.|++++|+| ++.+|++.|..++|+|
T Consensus 175 ~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 175 PLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHI 244 (391)
T ss_pred ceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEE
Confidence 9999999999 999999999997 789999999999999743 34688999999 9999999999999875
No 186
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.05 E-value=7.8e-10 Score=109.80 Aligned_cols=120 Identities=10% Similarity=0.198 Sum_probs=92.8
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
+.+|.-.|+.|+|+|||++|+++|.|+++.+|.......... .......|..-||.++|+|+ +.+|+|+|.|.+|+
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~---~fa~~k~HtRIIWdcsW~pd-e~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF---RFACLKAHTRIIWDCSWSPD-EKYFATASRDKKVK 643 (764)
T ss_pred ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh---hhccccccceEEEEcccCcc-cceeEEecCCceEE
Confidence 448999999999999999999999999999999866522111 11123357778999999999 88999999999999
Q ss_pred EEeCCCC--cceee--cccccCcEEEEEeecCCCC----eEEEeeCCCcEeC
Q 048199 452 VWDVTTQ--QSVME--YEEHEKRAWSVDFSRTEPS----MLVSGSDDCKVLY 495 (495)
Q Consensus 452 iwd~~~~--~~~~~--~~~h~~~v~~v~~~~~~g~----~l~s~s~D~~v~l 495 (495)
||..... ..+.. ...+...|+.++|.|.+.. .++.|-..|.|.|
T Consensus 644 VW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l 695 (764)
T KOG1063|consen 644 VWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL 695 (764)
T ss_pred EEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence 9998766 33332 3347889999999875443 6777777777653
No 187
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1.2e-08 Score=94.35 Aligned_cols=51 Identities=27% Similarity=0.684 Sum_probs=40.2
Q ss_pred ccccccccch-hhhcc----ccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCc
Q 048199 52 DMLCPICMQI-IKEAF----LTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLY 102 (495)
Q Consensus 52 ~l~C~IC~~~-~~~Pv----~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~ 102 (495)
+-.||||... +.+|- +.+|||.||..|+.++|... ..||.|+.++....+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 4579999984 55663 22799999999999987554 5899999999876643
No 188
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.03 E-value=1.3e-09 Score=103.43 Aligned_cols=119 Identities=19% Similarity=0.284 Sum_probs=94.0
Q ss_pred cCCCcEEEEEEccCC--CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 374 HSANIVSSIEFDRDD--QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
-|.+.|++++|||.. +++++|..-|.|-+||+.+..... ........|..+|.++.|+|.+...|++.|+||+|+
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---CceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 468899999999954 488899999999999997432211 233445578889999999999889999999999999
Q ss_pred EEeCCCCcc---------------------------------------------eeecccccCcEEEEEeecCCCCeEEE
Q 048199 452 VWDVTTQQS---------------------------------------------VMEYEEHEKRAWSVDFSRTEPSMLVS 486 (495)
Q Consensus 452 iwd~~~~~~---------------------------------------------~~~~~~h~~~v~~v~~~~~~g~~l~s 486 (495)
.-|++.+.. ...+.-|...|.+|+++|..+.+|||
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence 998764310 11112377789999999999999999
Q ss_pred eeCCCcEeC
Q 048199 487 GSDDCKVLY 495 (495)
Q Consensus 487 ~s~D~~v~l 495 (495)
+|.|++++|
T Consensus 341 ~s~D~T~kI 349 (498)
T KOG4328|consen 341 ASLDQTAKI 349 (498)
T ss_pred cccCcceee
Confidence 999999875
No 189
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=1.5e-09 Score=112.72 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=110.5
Q ss_pred ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee
Q 048199 342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE 421 (495)
Q Consensus 342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 421 (495)
.+|+--+.+.+|++. +++ .++ . +.||.+.|.++.|+-+|.++++.|.|+++|+|++++... -....
T Consensus 149 ~~gsv~~~iivW~~~-~dn-~p~-~-----l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~------~~~~~ 214 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPH-EDN-KPI-R-----LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV------LGCTG 214 (967)
T ss_pred EeccccccEEEEecc-ccC-Ccc-e-----ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc------cCccc
Confidence 345444588899885 222 112 2 239999999999999999999999999999999998711 12467
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc-CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 422 MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE-KRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 422 ~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++|..++|.+.|+|. .|+|++.|-+.++|+.. +..+..+.+|. +.||.++..+ +...++|++.|+.+++
T Consensus 215 fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~ 284 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKL 284 (967)
T ss_pred ccccceeEEEEeccc---eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhh
Confidence 899999999999976 99999999999999865 67777999994 5799999998 8889999999999875
No 190
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.02 E-value=1.3e-10 Score=76.24 Aligned_cols=41 Identities=34% Similarity=0.861 Sum_probs=35.7
Q ss_pred ccccccchh---hhccccCCCCccchhhHHhhhcCCCCCCCCCC
Q 048199 54 LCPICMQII---KEAFLTACGHSFCYMCIITHLRNKSDCPCCGH 94 (495)
Q Consensus 54 ~C~IC~~~~---~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~ 94 (495)
.|+||++.| ..|++++|||+||..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 499999999 24678999999999999999855679999985
No 191
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=3.6e-09 Score=104.94 Aligned_cols=148 Identities=18% Similarity=0.275 Sum_probs=108.7
Q ss_pred ccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199 332 DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 332 ~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
...+..+.++.+.+.++++.-||+.. .+++..+. ...+.||+++.+|.+..++.|+.||.+.+++...+.
T Consensus 74 ~L~W~e~~RLFS~g~sg~i~EwDl~~---lk~~~~~d-----~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-- 143 (691)
T KOG2048|consen 74 SLAWAEGGRLFSSGLSGSITEWDLHT---LKQKYNID-----SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-- 143 (691)
T ss_pred eEEEccCCeEEeecCCceEEEEeccc---CceeEEec-----CCCcceeEEEeCCccceEEeecCCceEEEEecCCce--
Confidence 34455566677777777888999843 33344444 346899999999999999999999977777766651
Q ss_pred CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc-------c-ccCcEEEEEeecCCCCe
Q 048199 412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-------E-HEKRAWSVDFSRTEPSM 483 (495)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-------~-h~~~v~~v~~~~~~g~~ 483 (495)
.........-.+++.+++|+|+ +..|++|+.||.|++||+.++..+.... . ..--||+|.|-. + ..
T Consensus 144 ---I~~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d-~t 217 (691)
T KOG2048|consen 144 ---ITYKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-D-ST 217 (691)
T ss_pred ---EEEEeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-c-Cc
Confidence 1111122234578999999999 8889999999999999999987766221 1 234689999885 4 58
Q ss_pred EEEeeCCCcEeC
Q 048199 484 LVSGSDDCKVLY 495 (495)
Q Consensus 484 l~s~s~D~~v~l 495 (495)
|++|..-|+|++
T Consensus 218 I~sgDS~G~V~F 229 (691)
T KOG2048|consen 218 IASGDSAGTVTF 229 (691)
T ss_pred EEEecCCceEEE
Confidence 999999999874
No 192
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.00 E-value=3.8e-09 Score=101.55 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=94.1
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCPV 419 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 419 (495)
+.++..|+.+.+|+... ...+..+. +| ..+.++.|+|++..+ ++++.++.|++||+.++ ...
T Consensus 4 ~~s~~~d~~v~~~d~~t---~~~~~~~~-----~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--------~~~ 66 (300)
T TIGR03866 4 YVSNEKDNTISVIDTAT---LEVTRTFP-----VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--------EVI 66 (300)
T ss_pred EEEecCCCEEEEEECCC---CceEEEEE-----CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCC--------cEE
Confidence 45667788999999742 23344444 22 236789999999866 57778999999999876 222
Q ss_pred eecCCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 420 VEMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 420 ~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
..+.....+..+.|+|+ +..+ +++..|+.|++||+.++..+..+.. ...+.+++|+| +|.++++++.++
T Consensus 67 ~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~ 136 (300)
T TIGR03866 67 GTLPSGPDPELFALHPN-GKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETT 136 (300)
T ss_pred EeccCCCCccEEEECCC-CCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCC
Confidence 22222334567899999 6655 4556789999999998887777753 23468899999 999999888765
No 193
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.99 E-value=2.1e-09 Score=97.74 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=101.0
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCC
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
.++-|+...++.|+.- ....++..+. +|.+.|+-+.|+++|+.|++|+. |-.|-.||++.. ..+
T Consensus 222 ~~a~gsY~q~~giy~~---~~~~pl~llg-----gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~-------~~p 286 (406)
T KOG2919|consen 222 TLAVGSYGQRVGIYND---DGRRPLQLLG-----GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS-------RDP 286 (406)
T ss_pred ceeeecccceeeeEec---CCCCceeeec-----ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc-------cch
Confidence 4455555444444432 3445666666 89999999999999999999875 788999999986 334
Q ss_pred eeecC-CC---CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 419 VVEMP-TR---SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 419 ~~~~~-~~---~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
+..+. |. ..-.-.+..|+ +.+|++|+.||.|++||.+. |..+..+..|...|+.|+++| -=.+++++|...
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~-~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP-~mpilatssGqr 362 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPK-GEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP-IMPILATSSGQR 362 (406)
T ss_pred hhhhhhhccCccceEEEecCCC-CceeeccCCCccEEEEecCCCCCcccccccccccccceecCc-ccceeeeccCce
Confidence 33331 21 22234556788 89999999999999999998 777888989999999999999 556788877654
No 194
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.99 E-value=6e-10 Score=101.50 Aligned_cols=111 Identities=15% Similarity=0.246 Sum_probs=85.5
Q ss_pred ccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeee----cCCCCCeEEEEEcCCCCCEEEEec
Q 048199 371 DIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE----MPTRSKLSCLSWNKFSKNRIASSD 445 (495)
Q Consensus 371 ~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~p~~~~~l~sg~ 445 (495)
.+.+|...|..|.|+|+ .++++++|.|.+||+|++++. ..+.. .+|.+.|.+++|+++ +.+|+|++
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--------~Cv~VfGG~egHrdeVLSvD~~~~-gd~i~ScG 200 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--------VCVAVFGGVEGHRDEVLSVDFSLD-GDRIASCG 200 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--------eEEEEecccccccCcEEEEEEcCC-CCeeeccC
Confidence 44589999999999995 568999999999999999997 22222 368889999999999 88999999
Q ss_pred CCCcEEEEeCCCCc------ce-------------------e---ecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 446 YEGIVTVWDVTTQQ------SV-------------------M---EYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 446 ~dg~v~iwd~~~~~------~~-------------------~---~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
.|.++++|++...+ +. . +-.-|+..|-|+.|- |.+++|-|-++.|
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI 273 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAI 273 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceE
Confidence 99999999987321 11 1 112366777777773 4677777766655
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=4.7e-09 Score=91.91 Aligned_cols=117 Identities=14% Similarity=0.209 Sum_probs=87.9
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC--C---CcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCC
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP--A---DVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYE 447 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~--~---~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~d 447 (495)
+|.++|+.++|+ ..+|++|+ ||.|+-|..+...... + ....|... ...-..|+++-..|..+.+|..| .|
T Consensus 60 ahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD 135 (325)
T KOG0649|consen 60 AHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GD 135 (325)
T ss_pred ccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CC
Confidence 799999999997 45777776 6999999987652211 1 11122111 11123589999999955555555 79
Q ss_pred CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 448 GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 448 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+.+.-||+++|+....|.||++.|.+|.-.. ....++||+.||+|||
T Consensus 136 ~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRv 182 (325)
T KOG0649|consen 136 GVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRV 182 (325)
T ss_pred eEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEE
Confidence 9999999999999999999999999999855 4457889999999986
No 196
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=98.98 E-value=2.6e-09 Score=100.37 Aligned_cols=34 Identities=24% Similarity=0.850 Sum_probs=31.1
Q ss_pred CCCccccccccchhhhccccCCCCccchhhHHhh
Q 048199 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITH 82 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~ 82 (495)
++|+|.||||...|++|.+|+|||+.|+.|....
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNI 34 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhh
Confidence 3789999999999999999999999999998743
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.98 E-value=1.9e-09 Score=97.99 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=108.4
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
.+.++.+-....+.|+.....+-.....+++ .|...|+.|.|.|..+.|++|+.|+.-.||....+ . ....
T Consensus 22 rt~iAv~~~~~evhiy~~~~~~~w~~~htls-----~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-~---~Wkp 92 (361)
T KOG1523|consen 22 RTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-----EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-G---TWKP 92 (361)
T ss_pred CceEEeccCCceEEEEEecCCCCceeceehh-----hhCcceeEEeecCCCCceeEccCCCCccccccCCC-C---eecc
Confidence 3334444444455566554333345566666 78999999999999999999999999999999543 0 1122
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
......++...+++.|+|. ++.|++|+.-..|.||=...... -..-..+...|.+++|+| ++-+|+.||.|+..
T Consensus 93 tlvLlRiNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~ 170 (361)
T KOG1523|consen 93 TLVLLRINRAATCVKWSPK-ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKC 170 (361)
T ss_pred ceeEEEeccceeeEeecCc-CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcce
Confidence 3344467788999999999 99999999999999997653221 112234678899999999 99999999999988
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
||
T Consensus 171 rV 172 (361)
T KOG1523|consen 171 RV 172 (361)
T ss_pred eE
Confidence 75
No 198
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.98 E-value=2.6e-10 Score=75.87 Aligned_cols=43 Identities=40% Similarity=1.012 Sum_probs=37.7
Q ss_pred ccccccchhhhcccc-CCCCccchhhHHhhhcC-CCCCCCCCCcC
Q 048199 54 LCPICMQIIKEAFLT-ACGHSFCYMCIITHLRN-KSDCPCCGHYL 96 (495)
Q Consensus 54 ~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~ 96 (495)
.|+||++.+.+|+.+ +|||.||..|+.+|+.. ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999999888765 59999999999999987 67899999753
No 199
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.5e-10 Score=111.96 Aligned_cols=58 Identities=38% Similarity=0.812 Sum_probs=51.9
Q ss_pred ccccccccchhhhccccCCCCccchhhHHhhhcCC-----CCCCCCCCcCccCCCcchHHHHH
Q 048199 52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-----SDCPCCGHYLTNNQLYPNFLLDK 109 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-----~~CP~Cr~~~~~~~l~~n~~l~~ 109 (495)
++.||||++.+.-|+.+.|||.||..||.+||... ..||.|+..+.+++|.+.+....
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 78999999999999999999999999999999865 48999999999999888776543
No 200
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.96 E-value=2.8e-09 Score=96.94 Aligned_cols=149 Identities=19% Similarity=0.238 Sum_probs=110.6
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
.+++.+..| ....+++++..|-.+...+.......-.+..+.|.+++|+| +...++.++...++-||.-...
T Consensus 168 ~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~------ 240 (406)
T KOG2919|consen 168 PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR------ 240 (406)
T ss_pred CCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC------
Confidence 445555554 44578888887666655454443322225688999999999 4558999999999999988775
Q ss_pred cCCCee-ecCCCCCeEEEEEcCCCCCEEEEecC-CCcEEEEeCCC-CcceeecccccC-cEEE--EEeecCCCCeEEEee
Q 048199 415 VHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDY-EGIVTVWDVTT-QQSVMEYEEHEK-RAWS--VDFSRTEPSMLVSGS 488 (495)
Q Consensus 415 ~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~-dg~v~iwd~~~-~~~~~~~~~h~~-~v~~--v~~~~~~g~~l~s~s 488 (495)
.|.. ..+|.+.|+-+.|.++ |+.|++|.. |-.|..||++. +.++..+..|.+ .--. ....| .+.+|++|+
T Consensus 241 --~pl~llggh~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~ 316 (406)
T KOG2919|consen 241 --RPLQLLGGHGGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGD 316 (406)
T ss_pred --CceeeecccCCCeeeEEeccC-cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccC
Confidence 3433 3478899999999999 889999885 56899999985 678888888865 2222 34457 899999999
Q ss_pred CCCcEeC
Q 048199 489 DDCKVLY 495 (495)
Q Consensus 489 ~D~~v~l 495 (495)
.||.|++
T Consensus 317 tdG~V~v 323 (406)
T KOG2919|consen 317 TDGSVRV 323 (406)
T ss_pred CCccEEE
Confidence 9999975
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=3.1e-09 Score=98.82 Aligned_cols=122 Identities=18% Similarity=0.283 Sum_probs=99.3
Q ss_pred cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEecCC
Q 048199 370 GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASSDYE 447 (495)
Q Consensus 370 ~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~d 447 (495)
.++.+|.+.|.+|.|+.++++|++||.|..+++|.+...... ....|+..++ |.+.|.|++|+.. ..++++|..+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~--k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~ 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR--KTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERW 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh--cCCCCceeccCccccceEEEEEccC-CeeEecCCCc
Confidence 345589999999999999999999999999999999764110 1113444443 4578999999988 8899999999
Q ss_pred CcEEEEeCCCCcceeecccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 448 GIVTVWDVTTQQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 448 g~v~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++|.+-|+.+.+.+..+... .+.|+.+..+| ..++|++.+.|+.|.+
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~ 175 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSF 175 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEE
Confidence 99999999999888887632 45899999999 5678999999998753
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.95 E-value=1.5e-09 Score=104.78 Aligned_cols=135 Identities=15% Similarity=0.102 Sum_probs=100.4
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
+..++.++.+.+.|+.++||.-+..-+ ..+.....+|+|++|.|+.+.++.+. .+.+.|=-+...
T Consensus 112 W~~dGtgLlt~GEDG~iKiWSrsGMLR---------Stl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n----- 176 (737)
T KOG1524|consen 112 WSPDGAGLLTAGEDGVIKIWSRSGMLR---------STVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAAN----- 176 (737)
T ss_pred cCCCCceeeeecCCceEEEEeccchHH---------HHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccc-----
Confidence 346788999999999999997532211 11224567899999999877555443 234555444443
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
..++....|.+-|.+++|++. .++|+||+.|-..+|||.. |..+..-..|+.+|++|+|+| + ..++.+|.
T Consensus 177 --~k~i~WkAHDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~ 246 (737)
T KOG1524|consen 177 --SKIIRWRAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNP-E-KDYLLWSY 246 (737)
T ss_pred --cceeEEeccCcEEEEeecCcc-ccceeecCCceeEEeeccc-CcccccCChhccceeeeeecc-c-cceeeeee
Confidence 345666789999999999999 8999999999999999965 777777778888888888888 6 55566654
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=7.8e-09 Score=96.46 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=117.7
Q ss_pred cCcccchhh--HHhhhhhhhcccCceEEEEeec--cccccCC--CcEEEEEEccC--CCEEEEEeCCCcEEEEEcccccc
Q 048199 339 EGYNAGLAD--FQSVLTTFTRYSRLRVIAELRH--GDIFHSA--NIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVVN 410 (495)
Q Consensus 339 ~~~~~g~~d--~~~~lw~~~~~~~~~~~~~~~~--~~~~~h~--~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~~ 410 (495)
..++.|+.. ..+.||++.. ...+|..++ .+.++-. -+++++.|-+. ...|+++..-+.+|+||.+.+
T Consensus 162 ~Iva~GGke~~n~lkiwdle~---~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q-- 236 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQ---SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ-- 236 (412)
T ss_pred ceEecCchhcccceeeeeccc---ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--
Confidence 335567776 6788999843 256666654 1222222 35677889886 789999999999999999987
Q ss_pred CCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceee-cccccCcEEEEEeecCCCCeEEEee
Q 048199 411 EPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 411 ~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
+.|+..+. ...+++++...|+ +++|++|..-|.+..||.+.+..... |.+-.+.|.+|..+| .+.+|+++|
T Consensus 237 -----RRPV~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~G 309 (412)
T KOG3881|consen 237 -----RRPVAQFDFLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCG 309 (412)
T ss_pred -----CcceeEeccccCcceeeeecCC-CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeec
Confidence 56777664 4568999999999 99999999999999999999988776 888999999999999 889999999
Q ss_pred CCCcEeC
Q 048199 489 DDCKVLY 495 (495)
Q Consensus 489 ~D~~v~l 495 (495)
-|+.|||
T Consensus 310 LDRyvRI 316 (412)
T KOG3881|consen 310 LDRYVRI 316 (412)
T ss_pred cceeEEE
Confidence 9999986
No 204
>PHA02926 zinc finger-like protein; Provisional
Probab=98.94 E-value=3.5e-10 Score=97.56 Aligned_cols=50 Identities=30% Similarity=0.831 Sum_probs=40.4
Q ss_pred CCCCccccccccchhhh---------ccccCCCCccchhhHHhhhcCC------CCCCCCCCcCc
Q 048199 48 ELDKDMLCPICMQIIKE---------AFLTACGHSFCYMCIITHLRNK------SDCPCCGHYLT 97 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~---------Pv~l~CGH~FC~~Ci~~~~~~~------~~CP~Cr~~~~ 97 (495)
...++..|+||++...+ ++..+|+|+||..||.+|.... ..||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34567899999998744 2456899999999999998753 36999999875
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.92 E-value=6.6e-09 Score=94.53 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=116.0
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
+......+.+++.|....+|....-.+.++...+. .|+..++++.|+|.++.|++||.-+.|.||-++..-.-..
T Consensus 63 Wap~snrIvtcs~drnayVw~~~~~~~WkptlvLl-----RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 63 WAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL-----RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred ecCCCCceeEccCCCCccccccCCCCeeccceeEE-----EeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence 34445678899999999999985445555555555 6789999999999999999999999999999876411100
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC------------------CCcceeecccccCcEEEEE
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT------------------TQQSVMEYEEHEKRAWSVD 475 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~------------------~~~~~~~~~~h~~~v~~v~ 475 (495)
.......+.+.|.+++|||. +-+|+.|+.|+..+||... -|.....+....++|..+.
T Consensus 138 ---sKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~ 213 (361)
T KOG1523|consen 138 ---SKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL 213 (361)
T ss_pred ---hhhhCCccccceeeeeccCC-cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE
Confidence 11123345677999999999 8899999999999999642 1233444445678999999
Q ss_pred eecCCCCeEEEeeCCCcEeC
Q 048199 476 FSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 476 ~~~~~g~~l~s~s~D~~v~l 495 (495)
|+| .|..|+=.+.|++|.+
T Consensus 214 fs~-sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 214 FSP-SGNRLAWVGHDSTVSF 232 (361)
T ss_pred eCC-CCCEeeEecCCCceEE
Confidence 999 9999999999998753
No 206
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.92 E-value=1.4e-08 Score=97.49 Aligned_cols=137 Identities=14% Similarity=0.112 Sum_probs=108.5
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
.++...+.+.+.|+.+.||+ ..+.+|+... ..++.++.|||.| .++.|...|.+.+.|..+.
T Consensus 377 hps~~q~~T~gqdk~v~lW~-----~~k~~wt~~~------~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~------ 438 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN-----DHKLEWTKII------EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ------ 438 (626)
T ss_pred CCChhheeeccCcceEEEcc-----CCceeEEEEe------cCceeEeeccCcc-eEEEeeccceEEEEecccc------
Confidence 45566788889999999998 2345666553 4678899999999 9999999999999999985
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Ccceeeccc-ccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEE-HEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~-h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
..+..-....++++++|+|+ |.+||.|+.|+.|.||-+.. |..+....- |..+|+.++|++ |+++|.+-|.|-.
T Consensus 439 --~lv~~~~d~~~ls~v~ysp~-G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 439 --DLVTIHTDNEQLSVVRYSPD-GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYE 514 (626)
T ss_pred --eeEEEEecCCceEEEEEcCC-CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceE
Confidence 22333234778999999999 99999999999999999864 444333322 347999999999 9999999998865
Q ss_pred E
Q 048199 493 V 493 (495)
Q Consensus 493 v 493 (495)
|
T Consensus 515 i 515 (626)
T KOG2106|consen 515 I 515 (626)
T ss_pred E
Confidence 4
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.92 E-value=1.5e-08 Score=92.27 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=84.4
Q ss_pred CCCEEEE-EeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc-EEEEeCCCCcceeec
Q 048199 387 DDQLFAT-AGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI-VTVWDVTTQQSVMEY 464 (495)
Q Consensus 387 ~~~~l~s-~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~-v~iwd~~~~~~~~~~ 464 (495)
...+||. |-.-|.|+|-|+.... ...+.....|.+.|.|++.+.+ |..+||+|..|+ |+|||..+|..+..+
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~-----~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTK-----PNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcC-----cCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence 3345553 4456899999998751 1135667789999999999999 999999999998 899999999999998
Q ss_pred ccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 465 EEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 465 ~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..- ...|++++|+| +..+|+.+|+-|+|+|
T Consensus 221 RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHI 252 (346)
T ss_pred ecCCchheEEEEEeCC-CccEEEEEcCCCeEEE
Confidence 642 45799999999 9999999999999875
No 208
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.90 E-value=6.8e-09 Score=102.35 Aligned_cols=157 Identities=11% Similarity=0.064 Sum_probs=109.3
Q ss_pred ccccccccCcccchh-hHHhhhhhhhcccCceEEEEeeccccccC---CCcEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 048199 332 DKNIIHREGYNAGLA-DFQSVLTTFTRYSRLRVIAELRHGDIFHS---ANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS 407 (495)
Q Consensus 332 ~~~~~~~~~~~~g~~-d~~~~lw~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~ 407 (495)
...+.+...+++++. |..+++||+.+.-..-.........+..| .-.+.++..+..|.+|+..+.|++|.+|++.+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 345566677776665 99999999854321110111111111123 44678888888899888878899999999987
Q ss_pred cccCCCCcCCCeeecCCC---CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCe
Q 048199 408 VVNEPADVHCPVVEMPTR---SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSM 483 (495)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~ 483 (495)
.. ..++..+.+. .-...-..+|| +.++++|+.|....+|.+.+. .....+.||.-.|++|+|.|..-.-
T Consensus 303 ~s------~sP~~~~sg~~~~sf~vks~lSpd-~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 303 LS------ISPVAEFSGKLNSSFYVKSELSPD-DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP 375 (720)
T ss_pred cC------cCchhhccCcccceeeeeeecCCC-CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC
Confidence 51 2333333221 11223345788 899999999999999999875 4677889999999999999866667
Q ss_pred EEEeeCCCcEeC
Q 048199 484 LVSGSDDCKVLY 495 (495)
Q Consensus 484 l~s~s~D~~v~l 495 (495)
++++++|.+++|
T Consensus 376 v~TcSdD~~~ki 387 (720)
T KOG0321|consen 376 VATCSDDFRVKI 387 (720)
T ss_pred ceeeccCcceEE
Confidence 888899998875
No 209
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.87 E-value=8.1e-10 Score=70.85 Aligned_cols=38 Identities=42% Similarity=1.208 Sum_probs=35.0
Q ss_pred cccccchhhhccccCCCCccchhhHHhhhc-CCCCCCCC
Q 048199 55 CPICMQIIKEAFLTACGHSFCYMCIITHLR-NKSDCPCC 92 (495)
Q Consensus 55 C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~-~~~~CP~C 92 (495)
|+||++...+++.++|||.||..|+.+|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998 55689987
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.87 E-value=1.2e-08 Score=98.71 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=93.0
Q ss_pred CCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccC-------CC-------------CcCCCeeecC-CCCCeEEEEE
Q 048199 376 ANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNE-------PA-------------DVHCPVVEMP-TRSKLSCLSW 433 (495)
Q Consensus 376 ~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~-------~~-------------~~~~~~~~~~-~~~~i~~~~~ 433 (495)
...|+++.|-| +..+|+.+-.++.+.+||....... ++ ....|+..+. ..+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 57899999999 5567888889999999987532110 00 0112332221 2357899999
Q ss_pred cCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 434 NKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 434 ~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+|| +.+||+-+.||.++|||..+.+.+..++..-+...||+|+| ||++|++|+.|.-|.|
T Consensus 299 S~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 299 SPD-GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTV 358 (636)
T ss_pred cCC-CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEE
Confidence 998 99999999999999999999888888887788899999999 9999999999987754
No 211
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.4e-10 Score=113.72 Aligned_cols=59 Identities=29% Similarity=0.669 Sum_probs=52.0
Q ss_pred cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCcchH
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLYPNF 105 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~ 105 (495)
..+..-|.||+|..-|+|.+++.|||.||..|+...+... .+||.|+..|...|+.+.|
T Consensus 638 k~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 638 KEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 4567789999999999999999999999999999877654 6999999999998887654
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.8e-08 Score=95.04 Aligned_cols=106 Identities=21% Similarity=0.287 Sum_probs=86.9
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc
Q 048199 380 SSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ 459 (495)
Q Consensus 380 ~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~ 459 (495)
..++|+++|..+++++.||++|||++... ........|++.|.++.|+|| +.+|++-+.| ..+|||+++|.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-------~t~l~e~~~~~eV~DL~FS~d-gk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-------LTILEEIAHHAEVKDLDFSPD-GKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-------hhhhhhHhhcCccccceeCCC-CcEEEEecCC-ceEEEEeccCc
Confidence 68899999999999999999999998776 344455578899999999999 8999999988 99999998873
Q ss_pred ceeecc-----------------------------------------cc-------------cCcEEEEEeecCCCCeEE
Q 048199 460 SVMEYE-----------------------------------------EH-------------EKRAWSVDFSRTEPSMLV 485 (495)
Q Consensus 460 ~~~~~~-----------------------------------------~h-------------~~~v~~v~~~~~~g~~l~ 485 (495)
+++... .| ...|.+++.+. +|++++
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~A 297 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLA 297 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEE
Confidence 322211 01 13688999999 999999
Q ss_pred EeeCCCcEeC
Q 048199 486 SGSDDCKVLY 495 (495)
Q Consensus 486 s~s~D~~v~l 495 (495)
.|+.||.|-|
T Consensus 298 lGT~dGsVai 307 (398)
T KOG0771|consen 298 LGTMDGSVAI 307 (398)
T ss_pred EeccCCcEEE
Confidence 9999998854
No 213
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=1.6e-08 Score=92.78 Aligned_cols=142 Identities=10% Similarity=0.113 Sum_probs=99.1
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCC-CcEEEEEEccCCCEEEEEeC----CCcEEEEEccccccCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSA-NIVSSIEFDRDDQLFATAGV----SRRIKVFDFASVVNEP 412 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~l~s~s~----d~~i~vwd~~~~~~~~ 412 (495)
.-.+.+++.|++|++||+....+...+..- +|. .+..+++..-.++++++|.. |-.|.+||++..
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~---- 153 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAESARISWT------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE---- 153 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchhhhheecc------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc----
Confidence 345678889999999999654432222111 233 35556665556777877643 677999999987
Q ss_pred CCcCCCee--ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc----ceeecccccCcEEEEEeecCCC-CeEE
Q 048199 413 ADVHCPVV--EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ----SVMEYEEHEKRAWSVDFSRTEP-SMLV 485 (495)
Q Consensus 413 ~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~g-~~l~ 485 (495)
..++. .-.|.+.|+++.|||.+.++|+|||.||.|.|||++.-. .+.++ .|...|..+.|.. ++ ..|.
T Consensus 154 ---qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~-~~ykrI~ 228 (376)
T KOG1188|consen 154 ---QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLS-KKYKRIM 228 (376)
T ss_pred ---cchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeec-CCcceEE
Confidence 22222 336889999999999999999999999999999997532 23334 3777899999987 65 2466
Q ss_pred EeeCCCcEe
Q 048199 486 SGSDDCKVL 494 (495)
Q Consensus 486 s~s~D~~v~ 494 (495)
+-+.+++..
T Consensus 229 clTH~Etf~ 237 (376)
T KOG1188|consen 229 CLTHMETFA 237 (376)
T ss_pred EEEccCcee
Confidence 656555543
No 214
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.82 E-value=7e-08 Score=96.35 Aligned_cols=135 Identities=23% Similarity=0.319 Sum_probs=105.0
Q ss_pred chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCCeeec
Q 048199 344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCPVVEM 422 (495)
Q Consensus 344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~~~~~ 422 (495)
+..|..+.+|++.. .......+. .|...|.++.|+|++..+++++. |+.+++|++... .......
T Consensus 130 ~~~d~~~~~~~~~~--~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 195 (466)
T COG2319 130 SSLDGTVKLWDLST--PGKLIRTLE-----GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-------KPLSTLA 195 (466)
T ss_pred CCCCccEEEEEecC--CCeEEEEEe-----cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-------ceEEeec
Confidence 34467888888752 123333344 78999999999999998888886 999999999974 1122222
Q ss_pred CCCCCeEEEEEcCCCCC-EEEEecCCCcEEEEeCCCCccee-ecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 423 PTRSKLSCLSWNKFSKN-RIASSDYEGIVTVWDVTTQQSVM-EYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 423 ~~~~~i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.|...+.+++|+|+ +. ++++++.|+.|++||...+..+. .+.+|...+ ...|++ ++.++++++.|+.+++
T Consensus 196 ~~~~~v~~~~~~~~-~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~ 267 (466)
T COG2319 196 GHTDPVSSLAFSPD-GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRL 267 (466)
T ss_pred cCCCceEEEEEcCC-cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEE
Confidence 47889999999998 65 66666999999999999888887 688998775 448999 8788899999999874
No 215
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.81 E-value=2.4e-09 Score=78.51 Aligned_cols=40 Identities=33% Similarity=0.909 Sum_probs=34.0
Q ss_pred ccccccchhhhc-------------cccCCCCccchhhHHhhhcCCCCCCCCC
Q 048199 54 LCPICMQIIKEA-------------FLTACGHSFCYMCIITHLRNKSDCPCCG 93 (495)
Q Consensus 54 ~C~IC~~~~~~P-------------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr 93 (495)
.|+||++.|.+| +..+|||.|+..||.+|+..+.+||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 399999999543 2348999999999999999999999997
No 216
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=3.1e-08 Score=92.27 Aligned_cols=143 Identities=12% Similarity=0.183 Sum_probs=109.5
Q ss_pred cccCcccchhhHHhhhhhhhcc--cCc-eEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 337 HREGYNAGLADFQSVLTTFTRY--SRL-RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~--~~~-~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
.+..+++|++|..+++|.+... .+. +++..... .|.+.|.+++|+-...++++|+.+++|.+.|+.+.
T Consensus 67 N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~----~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~----- 137 (609)
T KOG4227|consen 67 NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH----PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK----- 137 (609)
T ss_pred CCeEEeecCCcceeeeechHHHHhhcCCCCceeccC----ccccceEEEEEccCCeeEecCCCcceeEeeecccc-----
Confidence 4566899999999999997432 122 34444432 57899999999998899999999999999999986
Q ss_pred CcCCCeeecCCC---CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-cee--ecccccCcEEEEEeecCCCCeEEEe
Q 048199 414 DVHCPVVEMPTR---SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVM--EYEEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 414 ~~~~~~~~~~~~---~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~--~~~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
..+....|. +.|+.+..+|- .++|++.+.+|.|.+||++... ... .........+++-|+|..+.+|++.
T Consensus 138 ---qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 138 ---QSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred ---eeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence 334444444 47999999999 8999999999999999998644 211 1222345678899999889999998
Q ss_pred eCCCc
Q 048199 488 SDDCK 492 (495)
Q Consensus 488 s~D~~ 492 (495)
+..+-
T Consensus 214 ~~~~G 218 (609)
T KOG4227|consen 214 SETGG 218 (609)
T ss_pred cccCC
Confidence 86553
No 217
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=4.9e-08 Score=92.96 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=110.9
Q ss_pred cccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccc
Q 048199 331 SDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVV 409 (495)
Q Consensus 331 ~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~ 409 (495)
...+++....+.+++-|++++|+.+..... ..++.+. --..+|.+..|.|+|. .++++|.-+.+..||+.+.+
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk~N-~~lqS~~-----l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIH-----LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCccC-hhheeee-----eccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 334455667778888999999998853221 2344443 1257899999999999 89999999999999998751
Q ss_pred cC----CCCcC------------CC-ee--------------------ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 410 NE----PADVH------------CP-VV--------------------EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 410 ~~----~~~~~------------~~-~~--------------------~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.. +.+.. .. +. .+.-.+.|..+.|+.| +..|+..+.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSD-SKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecC-CcEEEEEcCCceEEE
Confidence 11 00000 00 00 1112355788999988 677777777899999
Q ss_pred EeCCCCcceeecccccC-cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 453 WDVTTQQSVMEYEEHEK-RAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~-~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
||++...++..|....+ .-++++.++ +|.+||+||..|.|-|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNI 413 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEE
Confidence 99999999888875432 235677778 9999999999998754
No 218
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.80 E-value=1.4e-08 Score=91.16 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=105.9
Q ss_pred cccchhhHHhhhhhhhc-ccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 341 YNAGLADFQSVLTTFTR-YSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
+++.++ .++||.+.. -.+......+....-..+.++++++.|+. +-+++.++|.|-|-.|||+.++. .+.-.
T Consensus 116 LATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~----~~~vk 189 (364)
T KOG0290|consen 116 LATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV----SGTVK 189 (364)
T ss_pred hhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc----cccee
Confidence 444444 678998753 12233333343333235678999999986 77899999999999999999861 11223
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc---ccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE---HEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~---h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
...+.|...|..++|...+-..|+|.+.||+|++||++...--..+.+ ...+...++|++.|++++||-..|..
T Consensus 190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 455689999999999987778999999999999999997554333322 14577889999888899888776653
No 219
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.79 E-value=3e-08 Score=100.86 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=112.0
Q ss_pred cccCcccchhhHHhhhhhhhcccC--ceEEEEeeccccccCCCcEEEEEEccCC--CEEEEEeCCCcEEEEEccccccC-
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSR--LRVIAELRHGDIFHSANIVSSIEFDRDD--QLFATAGVSRRIKVFDFASVVNE- 411 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~~p~~--~~l~s~s~d~~i~vwd~~~~~~~- 411 (495)
+...++.|..+++|.+||...... ...+.... ..|..+|+.+.|..+. .-|+++|.||+|..|+++.....
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~----~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~ 329 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE----VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV 329 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCCCccccccc----ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence 345677888899999999864332 11222222 1689999999997644 45999999999999998642100
Q ss_pred ------CC-----------------------------------------CcC-CC------e-eecCCCCCeEEEEEcCC
Q 048199 412 ------PA-----------------------------------------DVH-CP------V-VEMPTRSKLSCLSWNKF 436 (495)
Q Consensus 412 ------~~-----------------------------------------~~~-~~------~-~~~~~~~~i~~~~~~p~ 436 (495)
.. +.. .+ . ....|.++|+++.++|.
T Consensus 330 e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF 409 (555)
T KOG1587|consen 330 EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF 409 (555)
T ss_pred hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence 00 000 00 0 12246678999999999
Q ss_pred CCCEEEEecCCCcEEEEeCC-CCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 437 SKNRIASSDYEGIVTVWDVT-TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 437 ~~~~l~sg~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
...+|.+++ |.+|+||.-. ...++..+..+.+.|++++|||+.+..++++..||.|.|
T Consensus 410 ~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~i 468 (555)
T KOG1587|consen 410 YPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDI 468 (555)
T ss_pred ccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence 555555655 9999999988 678888898899999999999988999999999998864
No 220
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.78 E-value=1.2e-09 Score=110.42 Aligned_cols=97 Identities=18% Similarity=0.306 Sum_probs=81.1
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
-...+|++|..++||.. .....+.+++ ||.+.|++++.+....+++++|.|..|++|-+..+ .+
T Consensus 203 ~~Iitgsdd~lvKiwS~---et~~~lAs~r-----Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~--------~p 266 (1113)
T KOG0644|consen 203 RYIITGSDDRLVKIWSM---ETARCLASCR-----GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG--------AP 266 (1113)
T ss_pred ceEeecCccceeeeeec---cchhhhccCC-----CCccccchhccchhhhhhhhcccCceEEEEecCCC--------ch
Confidence 34678999999999985 3344566666 99999999999988889999999999999999987 34
Q ss_pred e-eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 419 V-VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 419 ~-~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
+ ...+|.+.|++++|+|. . +.+.||++++||.+
T Consensus 267 vsvLrghtgavtaiafsP~-~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPR-A----SSSDDGTCRIWDAR 300 (1113)
T ss_pred HHHHhccccceeeeccCcc-c----cCCCCCceEecccc
Confidence 3 34589999999999997 3 77789999999976
No 221
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.2e-07 Score=93.04 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=83.2
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
||++.|++|+.+|.|.+|++|+.||+||||.+.++ ..+..+...+.|.+++|+|.....++....++.+.|-
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--------Rcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--------RCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--------eEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 99999999999999999999999999999999998 4555566677899999999854444444444556565
Q ss_pred eCCCCc-------------------------------------ceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 454 DVTTQQ-------------------------------------SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 454 d~~~~~-------------------------------------~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
+..-|. -+.....|...|..|.|+. .|.||++...|+
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~ 543 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDS 543 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCC
Confidence 532220 0112224778899999999 999999988654
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.78 E-value=9.4e-08 Score=94.85 Aligned_cols=150 Identities=15% Similarity=0.217 Sum_probs=102.3
Q ss_pred cccccCcccchhhHHhhhhhhh-----cccCceEEEEeeccc----------------------cccC--CCcEEEEEEc
Q 048199 335 IIHREGYNAGLADFQSVLTTFT-----RYSRLRVIAELRHGD----------------------IFHS--ANIVSSIEFD 385 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~-----~~~~~~~~~~~~~~~----------------------~~~h--~~~V~~l~~~ 385 (495)
.-++..+++|+.|..|.+|... +|+....++-+.-.- ...| ...|.+.+|.
T Consensus 62 s~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 62 AKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWT 141 (1081)
T ss_pred ccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeec
Confidence 3577889999999999999842 444333333332110 0112 3466777888
Q ss_pred cCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec--CCCCCeEEEEEcC----------------------------
Q 048199 386 RDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM--PTRSKLSCLSWNK---------------------------- 435 (495)
Q Consensus 386 p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p---------------------------- 435 (495)
.||++|+-|-.||+|.+-+-....+ ..... +.+++||+++|+|
T Consensus 142 nDGqylalG~~nGTIsiRNk~gEek-------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~ 214 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKNGEEK-------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ 214 (1081)
T ss_pred CCCcEEEEeccCceEEeecCCCCcc-------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence 9999999999999999886543200 00000 1233444444444
Q ss_pred ------------------CCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 436 ------------------FSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 436 ------------------~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+ |.++..|+.|+.+++|- +.|..+.++.....|||+|+..| |+.+++.|+.||+|-
T Consensus 215 Igk~r~L~FdP~CisYf~N-GEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALNFDPCCISYFTN-GEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCCCCchhheeccC-CcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeee
Confidence 4 67777777788888876 45777777777788999999999 999999999999973
No 223
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=7.1e-08 Score=84.66 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=81.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
-..|.++.++|..+-+++++.|+.+.-||++++ .......+|.+.|.++.--.. ...|+||+.||+++|||.
T Consensus 114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-------~i~r~~rGHtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-------RIQREYRGHTDYVHSVVGRNA-NGQILSGAEDGTVRVWDT 185 (325)
T ss_pred CCccceeEeccCCCcEEEecCCeEEEEEEecCC-------EEEEEEcCCcceeeeeeeccc-CcceeecCCCccEEEEec
Confidence 357899999998887778888999999999998 334455588899999988555 568999999999999999
Q ss_pred CCCcceeeccc---------c-cCcEEEEEeecCCCCeEEEeeC
Q 048199 456 TTQQSVMEYEE---------H-EKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 456 ~~~~~~~~~~~---------h-~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
++++++..+.. | ..+|-+++-+ ..+|+.|+.
T Consensus 186 kt~k~v~~ie~yk~~~~lRp~~g~wigala~~---edWlvCGgG 226 (325)
T KOG0649|consen 186 KTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN---EDWLVCGGG 226 (325)
T ss_pred cccceeEEeccccChhhcCcccCceeEEEecc---CceEEecCC
Confidence 99998887753 2 3456666654 478887764
No 224
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.3e-09 Score=95.09 Aligned_cols=50 Identities=28% Similarity=0.677 Sum_probs=43.3
Q ss_pred CccccccccchhhhccccCCCCccchhhHHh-hhcCCC-CCCCCCCcCccCC
Q 048199 51 KDMLCPICMQIIKEAFLTACGHSFCYMCIIT-HLRNKS-DCPCCGHYLTNNQ 100 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~-~~~~~~-~CP~Cr~~~~~~~ 100 (495)
.+..|+||++....|..++|||+||..||.. |-.... .||.||+.+.+.+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4678999999999999999999999999999 655554 5999999887644
No 225
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=1e-07 Score=90.88 Aligned_cols=110 Identities=15% Similarity=0.246 Sum_probs=82.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCC--eEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSK--LSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
.+.|.++.|+.+++.|+.++.+|.|.+||++.. ..+..+.-.+. -++++.+++ +.+||+|+..|.|.||
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~--------~~~~rf~D~G~v~gts~~~S~n-g~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN--------SCLHRFVDDGSVHGTSLCISLN-GSYLATGSDSGIVNIY 414 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCc--------ceEEEEeecCccceeeeeecCC-CceEEeccCcceEEEe
Confidence 678999999999999999999999999999986 22333323333 356677787 8899999999999999
Q ss_pred eCCCC------cceeec-----------------------------------------------ccccCcEEEEEeecCC
Q 048199 454 DVTTQ------QSVMEY-----------------------------------------------EEHEKRAWSVDFSRTE 480 (495)
Q Consensus 454 d~~~~------~~~~~~-----------------------------------------------~~h~~~v~~v~~~~~~ 480 (495)
|..+. +++..+ .+.-+.|+|++|+| +
T Consensus 415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~ 493 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-N 493 (514)
T ss_pred ccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-C
Confidence 95431 122211 11124689999999 9
Q ss_pred CCeEEEeeCCCcEeC
Q 048199 481 PSMLVSGSDDCKVLY 495 (495)
Q Consensus 481 g~~l~s~s~D~~v~l 495 (495)
+.+||.|..+|.|.|
T Consensus 494 sG~lAvGNe~grv~l 508 (514)
T KOG2055|consen 494 SGYLAVGNEAGRVHL 508 (514)
T ss_pred CceEEeecCCCceee
Confidence 999999999998864
No 226
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.70 E-value=1.1e-07 Score=88.46 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=74.8
Q ss_pred HHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc-EEEEEccccccCCCCcCCCeeecC---
Q 048199 348 FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR-IKVFDFASVVNEPADVHCPVVEMP--- 423 (495)
Q Consensus 348 ~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~~--- 423 (495)
+.|.||+. ....++..+. .|.+.+.+++|+++|.+|||+|..|+ ||||.+..+ ..+..+.
T Consensus 153 GdV~l~d~---~nl~~v~~I~-----aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G--------~kl~eFRRG~ 216 (391)
T KOG2110|consen 153 GDVVLFDT---INLQPVNTIN-----AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG--------QKLYEFRRGT 216 (391)
T ss_pred ceEEEEEc---ccceeeeEEE-----ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc--------cEeeeeeCCc
Confidence 37888887 4456666666 79999999999999999999999887 799999887 2222221
Q ss_pred CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
....|.+++|+|+ +.+|.+.+..++|+||.+.
T Consensus 217 ~~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 217 YPVSIYSLSFSPD-SQFLAASSNTETVHIFKLE 248 (391)
T ss_pred eeeEEEEEEECCC-CCeEEEecCCCeEEEEEec
Confidence 1235899999999 8899999999999999765
No 227
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.69 E-value=2.8e-07 Score=92.04 Aligned_cols=137 Identities=23% Similarity=0.303 Sum_probs=102.2
Q ss_pred Ccccchh-hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 340 GYNAGLA-DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 340 ~~~~g~~-d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
.+..+.. |..+.+|+... ...+..+. +|...|.+++|+|++. .+++++.|++|++||...+ ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-------~~ 233 (466)
T COG2319 169 LLASGSSLDGTIKLWDLRT---GKPLSTLA-----GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-------KL 233 (466)
T ss_pred EEEecCCCCCceEEEEcCC---CceEEeec-----cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-------cE
Confidence 3445553 78899998753 23344444 6899999999999988 6666699999999987744 11
Q ss_pred Ce-eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc-eeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 418 PV-VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS-VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 418 ~~-~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.. ....|.... -..|+|+ +.++++++.|+.+++||++.... +..+.+|...|.++.|+| ++..+++++.|+.++
T Consensus 234 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~ 309 (466)
T COG2319 234 LRSTLSGHSDSV-VSSFSPD-GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVR 309 (466)
T ss_pred EeeecCCCCcce-eEeECCC-CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEE
Confidence 11 233444443 2389999 68888999999999999987664 555578899999999999 888898888887654
No 228
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.69 E-value=1.6e-08 Score=100.23 Aligned_cols=125 Identities=13% Similarity=0.292 Sum_probs=97.8
Q ss_pred HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCe
Q 048199 349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKL 428 (495)
Q Consensus 349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i 428 (495)
.+.++|.. ....+.+++ +|.+.|++++|+.+|+.|++|+.|+.|.+|+-.-. -...+.|.+.|
T Consensus 34 rlliyD~n---dG~llqtLK-----gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---------G~LkYSH~D~I 96 (1081)
T KOG1538|consen 34 RLLVYDTS---DGTLLQPLK-----GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---------GILKYSHNDAI 96 (1081)
T ss_pred EEEEEeCC---Ccccccccc-----cccceEEEEEEccCCceeccCCCceeEEEeccccc---------ceeeeccCCee
Confidence 56677763 334466666 99999999999999999999999999999986643 34566899999
Q ss_pred EEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 429 SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 429 ~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
-|+.|+|- ..+|+|++.+ ..-+|..... .+.... -..+|.+.+|+. ||.+|+-|-.||+|.|
T Consensus 97 QCMsFNP~-~h~LasCsLs-dFglWS~~qK-~V~K~k-ss~R~~~CsWtn-DGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 97 QCMSFNPI-THQLASCSLS-DFGLWSPEQK-SVSKHK-SSSRIICCSWTN-DGQYLALGMFNGTISI 158 (1081)
T ss_pred eEeecCch-HHHhhhcchh-hccccChhhh-hHHhhh-hheeEEEeeecC-CCcEEEEeccCceEEe
Confidence 99999999 8889988764 5668876532 222221 245788999999 9999999999999864
No 229
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.68 E-value=2.3e-07 Score=89.09 Aligned_cols=134 Identities=11% Similarity=0.067 Sum_probs=91.1
Q ss_pred ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCcCCCee
Q 048199 342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADVHCPVV 420 (495)
Q Consensus 342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 420 (495)
..+..+..+.+|+... ...+..+. .+ ..+..+.|+|+++.++ +++.|+.|++||+.+. ..+.
T Consensus 47 ~~~~~~~~v~~~d~~~---~~~~~~~~-----~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~--------~~~~ 109 (300)
T TIGR03866 47 VCASDSDTIQVIDLAT---GEVIGTLP-----SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETR--------KVLA 109 (300)
T ss_pred EEECCCCeEEEEECCC---CcEEEecc-----CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCC--------eEEe
Confidence 4566677888998742 22233333 22 2246789999998665 4566899999999875 2233
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEecCCC-cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE-EeeCCCcEeC
Q 048199 421 EMPTRSKLSCLSWNKFSKNRIASSDYEG-IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV-SGSDDCKVLY 495 (495)
Q Consensus 421 ~~~~~~~i~~~~~~p~~~~~l~sg~~dg-~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~-s~s~D~~v~l 495 (495)
.+.....+.+++|+|+ +.++++++.++ .+.+||..++..+..+.. ...+..++|++ ++.+|+ ++..|+.|++
T Consensus 110 ~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~i 183 (300)
T TIGR03866 110 EIPVGVEPEGMAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTA-DGKELWVSSEIGGTVSV 183 (300)
T ss_pred EeeCCCCcceEEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECC-CCCEEEEEcCCCCEEEE
Confidence 3333445688999999 88888888765 577889988776655432 23457799999 888775 4445887763
No 230
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=6.4e-08 Score=100.75 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=106.3
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCc--EEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANI--VSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
++.++.|..|+++++||..--.....+..-+ .|+.. |..+.+.+.|- .|++|+.||.|++||++..... .
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-----~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e--~ 1293 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-----EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE--T 1293 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeec-----ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc--c
Confidence 4567789999999999974222222333333 57776 99999998665 4999999999999999984111 1
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-------cCcEEEEEeecCCCCeEEEe
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-------EKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~~l~s~ 487 (495)
....+......+.++++..|+. ..+||+|+. +.|+|||+. |+.+..+..+ .+.+.+++|+| .--+||.|
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~h-apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG 1369 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEH-APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAG 1369 (1387)
T ss_pred cceeeeccccCccceeeeeccC-CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhc
Confidence 1111222223345899999999 889999998 999999986 6665555433 34679999999 77789999
Q ss_pred eCCCcEeC
Q 048199 488 SDDCKVLY 495 (495)
Q Consensus 488 s~D~~v~l 495 (495)
+.|.+|.|
T Consensus 1370 ~~Ds~V~i 1377 (1387)
T KOG1517|consen 1370 SADSTVSI 1377 (1387)
T ss_pred cCCceEEE
Confidence 99998864
No 231
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=7.1e-08 Score=94.66 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=94.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
....|.+++.||.|..|+.++.|+.+..||++-. ..+... ..|...+++++||+. -.+|++|+.||++.||
T Consensus 606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldls-------skPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-------SKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVF 677 (733)
T ss_pred CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC-------cchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEE
Confidence 4668999999999999999999999999999876 223332 357778999999999 8999999999999999
Q ss_pred eCCC---------CcceeecccccCc----EEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTT---------QQSVMEYEEHEKR----AWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~---------~~~~~~~~~h~~~----v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.-.- -.++..+.+|... |..+.|+| .-.+|+|++.||+|+|
T Consensus 678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRL 731 (733)
T ss_pred eeeeehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEecCCCceEEe
Confidence 5321 2467888999765 88999999 7789999999999986
No 232
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.65 E-value=6.9e-08 Score=93.56 Aligned_cols=111 Identities=18% Similarity=0.376 Sum_probs=90.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
.|.+.|.+-.|+|+|.-|+|+|.||.|++|.-....+ ..+ ......|+|++|.|++.+++++.+ +.+.|=
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR------Stl--~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IK 171 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR------STV--VQNEESIRCARWAPNSNSIVFCQG--GHISIK 171 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH------HHH--hhcCceeEEEEECCCCCceEEecC--CeEEEe
Confidence 6999999999999999999999999999999766521 111 234557999999999778888765 456665
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
-+.....+-....|.+-|.+++|++ ..++++||+.|-..||
T Consensus 172 pL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 172 PLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKI 212 (737)
T ss_pred ecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEe
Confidence 6665666777889999999999999 8899999999987764
No 233
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.64 E-value=1.4e-08 Score=93.23 Aligned_cols=71 Identities=25% Similarity=0.596 Sum_probs=57.3
Q ss_pred ccccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccC----CCcchHHHHHHHHHH
Q 048199 44 VGVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNN----QLYPNFLLDKLLKKT 114 (495)
Q Consensus 44 ~~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~----~l~~n~~l~~~v~~~ 114 (495)
....++...++|.+|..+|.|+-++ -|-|+||+.||.+++.....||.|...+... .+.....++.++.++
T Consensus 7 vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 7 VKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 4456777889999999999999855 6999999999999999999999999877543 355556666665554
No 234
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=4.4e-07 Score=84.15 Aligned_cols=145 Identities=13% Similarity=0.195 Sum_probs=100.7
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCC------
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEP------ 412 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~------ 412 (495)
.++.+..|-.|++++-.. .....++. .....|++++|-|. +..|+.|+ -+-|.||..+...+.-
T Consensus 112 ~fava~nddvVriy~kss----t~pt~Lks----~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~ 182 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS----TCPTKLKS----VSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMM 182 (445)
T ss_pred hhhhhccCcEEEEeccCC----CCCceecc----hhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccc
Confidence 456677777888887532 11222222 12456999999995 44666666 4569999987652221
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
..++..+.....+..|+++.|++| +..+++++.+ ..|.|||..++..+.-..---+.+.-+.|+| ||.+|+.++-|+
T Consensus 183 s~~~~qvl~~pgh~pVtsmqwn~d-gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~da 260 (445)
T KOG2139|consen 183 STHHLQVLQDPGHNPVTSMQWNED-GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDA 260 (445)
T ss_pred cccchhheeCCCCceeeEEEEcCC-CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccc
Confidence 122233344445578999999999 8889988864 5799999999877655533356788899999 999999999998
Q ss_pred cEeC
Q 048199 492 KVLY 495 (495)
Q Consensus 492 ~v~l 495 (495)
..++
T Consensus 261 vfrl 264 (445)
T KOG2139|consen 261 VFRL 264 (445)
T ss_pred eeee
Confidence 7764
No 235
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.1e-09 Score=96.44 Aligned_cols=71 Identities=34% Similarity=0.787 Sum_probs=55.8
Q ss_pred ccccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCC-CCCCCCCCcCcc-CCCcchHHHHHHHHHH
Q 048199 44 VGVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNK-SDCPCCGHYLTN-NQLYPNFLLDKLLKKT 114 (495)
Q Consensus 44 ~~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~-~~l~~n~~l~~~v~~~ 114 (495)
..+..|..++.||||+++++...++ .|+|-||..||.+.+... ..||.||+.+.. +.|++.-.+..++..+
T Consensus 35 ~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 35 VDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred ecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 4456778899999999999999877 599999999999987765 689999998854 5666554444555544
No 236
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=2.1e-07 Score=97.05 Aligned_cols=139 Identities=13% Similarity=0.141 Sum_probs=101.2
Q ss_pred cchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee
Q 048199 343 AGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE 421 (495)
Q Consensus 343 ~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 421 (495)
.+++-..|+|||.. +...+.++.. +....|++++-+. .|+.++.|-.||.|++||.+.... ...+..
T Consensus 1182 ~tGd~r~IRIWDa~---~E~~~~diP~----~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-----ds~v~~ 1249 (1387)
T KOG1517|consen 1182 VTGDVRSIRIWDAH---KEQVVADIPY----GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-----DSLVCV 1249 (1387)
T ss_pred ecCCeeEEEEEecc---cceeEeeccc----CCCccceeecccccCCceEEEeecCCceEEeecccCCc-----ccccee
Confidence 34445678899883 4455666665 4467788888764 679999999999999999987622 123322
Q ss_pred -cCCCCC--eEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--ceeeccccc--C-cEEEEEeecCCCCeEEEeeCCCcE
Q 048199 422 -MPTRSK--LSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHE--K-RAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 422 -~~~~~~--i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~--~-~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
..|... |..+.+.+.+-..|++|+.||.|++||++... ..-++..|. + .++++..++ +..++|+|+. +.|
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLI 1327 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceE
Confidence 246655 99999998734469999999999999999642 223333443 3 489999999 8899999997 666
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
+|
T Consensus 1328 kI 1329 (1387)
T KOG1517|consen 1328 KI 1329 (1387)
T ss_pred EE
Confidence 64
No 237
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.62 E-value=6.1e-08 Score=86.07 Aligned_cols=71 Identities=18% Similarity=0.401 Sum_probs=62.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
...|..+.+-||++.|||+|.|+.||||..++. .|... ..|.+.|++++|+|+ -.++|+++.|+.|.+|+
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl--------~pLAVLkyHsagvn~vAfspd-~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL--------NPLAVLKYHSAGVNAVAFSPD-CELMAAASKDARISLWK 321 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccC--------CchhhhhhhhcceeEEEeCCC-CchhhhccCCceEEeee
Confidence 456889999999999999999999999999997 44333 357789999999999 88999999999999998
Q ss_pred C
Q 048199 455 V 455 (495)
Q Consensus 455 ~ 455 (495)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 6
No 238
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.61 E-value=1.5e-07 Score=95.83 Aligned_cols=114 Identities=11% Similarity=0.195 Sum_probs=91.1
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.|.+.|+++.++|-+..++..+.|.+|+||..... ..|...+. +...+++++|+|....+|+++..||.|.|
T Consensus 396 ~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~-------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~i 468 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI-------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDI 468 (555)
T ss_pred ccCcceEeeecCCCccceeeeeccceeEeccccCC-------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence 47899999999997665554444999999998843 24555543 44559999999998899999999999999
Q ss_pred EeCCC--CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 453 WDVTT--QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 453 wd~~~--~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
||+.. ..++.+..-+....+.+.|++ +|.+|+.|...|++++
T Consensus 469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 469 WDLLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHI 512 (555)
T ss_pred hhhhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEE
Confidence 99964 456666665666777888888 9999999999998764
No 239
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.60 E-value=1.4e-08 Score=69.86 Aligned_cols=42 Identities=26% Similarity=0.654 Sum_probs=30.5
Q ss_pred CCccccccccchhhhccc-cCCCCccchhhHHhhhcCC--CCCCC
Q 048199 50 DKDMLCPICMQIIKEAFL-TACGHSFCYMCIITHLRNK--SDCPC 91 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~-l~CGH~FC~~Ci~~~~~~~--~~CP~ 91 (495)
.-.+.|||.+..|++||. ..|||+|.+..|..|+... ..||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 446899999999999985 5899999999999999443 48998
No 240
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.57 E-value=1.3e-06 Score=79.91 Aligned_cols=75 Identities=17% Similarity=0.356 Sum_probs=64.8
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCc-EEEEEccccccCCCCcCCCeeec---CCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRR-IKVFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNKFSKNRIASSDYEGI 449 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~sg~~dg~ 449 (495)
.|.+.|.+++++.+|.++||+|..|| |||||..++ ..+..+ .....|++++|+|+ ..+|+.+|..|+
T Consensus 179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--------~~l~E~RRG~d~A~iy~iaFSp~-~s~LavsSdKgT 249 (346)
T KOG2111|consen 179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--------TLLQELRRGVDRADIYCIAFSPN-SSWLAVSSDKGT 249 (346)
T ss_pred cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC--------cEeeeeecCCchheEEEEEeCCC-ccEEEEEcCCCe
Confidence 79999999999999999999999988 899999998 333333 23456999999999 999999999999
Q ss_pred EEEEeCCC
Q 048199 450 VTVWDVTT 457 (495)
Q Consensus 450 v~iwd~~~ 457 (495)
|+||.++.
T Consensus 250 lHiF~l~~ 257 (346)
T KOG2111|consen 250 LHIFSLRD 257 (346)
T ss_pred EEEEEeec
Confidence 99998764
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.55 E-value=1.4e-07 Score=85.20 Aligned_cols=140 Identities=15% Similarity=0.108 Sum_probs=102.8
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEE-eeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAE-LRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
+.+.+|++|..+.-||+. ..+ ..++. .+ -|+..|.+|.-+| .+.+++||+.|-.|++||+++. .
T Consensus 179 nlvytGgDD~~l~~~D~R-~p~-~~i~~n~k-----vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm-------~ 244 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIR-IPK-TFIWHNSK-----VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM-------G 244 (339)
T ss_pred ceEEecCCCceEEEEEec-CCc-ceeeecce-----eeecceEEEecCCCCCceEEEeccccceeeeehhcc-------c
Confidence 567899999999999985 222 33333 22 5889999999986 6889999999999999999987 3
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC--c---ceeecccccCcEEEEEeecCCCCeEEEee-CC
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ--Q---SVMEYEEHEKRAWSVDFSRTEPSMLVSGS-DD 490 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~--~---~~~~~~~h~~~v~~v~~~~~~g~~l~s~s-~D 490 (495)
.|+..-.-.++||.+.++|.....++.++.-.-.+|-++..+ + ....+..|.+-++.-.|.. ...+|+|+| +|
T Consensus 245 kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYD 323 (339)
T KOG0280|consen 245 KPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYD 323 (339)
T ss_pred CccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccccc-ccceeeeeeccc
Confidence 455554555899999999985444555555555677777543 3 4556677888888888866 456789887 46
Q ss_pred CcE
Q 048199 491 CKV 493 (495)
Q Consensus 491 ~~v 493 (495)
+.+
T Consensus 324 k~~ 326 (339)
T KOG0280|consen 324 KKI 326 (339)
T ss_pred cce
Confidence 654
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.54 E-value=9.9e-08 Score=87.80 Aligned_cols=154 Identities=19% Similarity=0.304 Sum_probs=111.5
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
.+.+.+.++ +|..+.||.+.-.+..-.+.+++..++..-+..|++..||| ..+.|+..+..|+||+.|++.. .+..
T Consensus 174 sD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~--aLCd 250 (433)
T KOG1354|consen 174 SDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS--ALCD 250 (433)
T ss_pred CccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh--hhhc
Confidence 445555554 88899999987666666788888655544567899999999 6789999999999999999853 1111
Q ss_pred cCCCeee-----------cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC-CCcceeecccccC------------c
Q 048199 415 VHCPVVE-----------MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT-TQQSVMEYEEHEK------------R 470 (495)
Q Consensus 415 ~~~~~~~-----------~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~-~~~~~~~~~~h~~------------~ 470 (495)
.+..... ..--+.|..+.|+++ |.++++-++ -+|++||+. ..+++.++.-|.. .
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 1111111 011245788999999 999999987 499999994 5677777776632 2
Q ss_pred E---EEEEeecCCCCeEEEeeCCCcEeC
Q 048199 471 A---WSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 471 v---~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
| ..++|+. ++.+++|||....+++
T Consensus 329 IfdKFec~~sg-~~~~v~TGsy~n~frv 355 (433)
T KOG1354|consen 329 IFDKFECSWSG-NDSYVMTGSYNNVFRV 355 (433)
T ss_pred hhheeEEEEcC-CcceEecccccceEEE
Confidence 2 4568888 8889999999887664
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.54 E-value=5.6e-07 Score=80.51 Aligned_cols=101 Identities=11% Similarity=0.200 Sum_probs=73.1
Q ss_pred ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCC
Q 048199 342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~ 418 (495)
..|..+..+.+|+.. ...+..+. ...+..|.|+|+|++|++++.+ |.|.+||++.. ..
T Consensus 77 i~g~~~~~v~lyd~~----~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--------~~ 137 (194)
T PF08662_consen 77 IYGSMPAKVTLYDVK----GKKIFSFG-------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--------KK 137 (194)
T ss_pred EEccCCcccEEEcCc----ccEeEeec-------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--------EE
Confidence 345555688899883 33444443 4567889999999999998754 56999999975 33
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecC------CCcEEEEeCCCCcceeec
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDY------EGIVTVWDVTTQQSVMEY 464 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~------dg~v~iwd~~~~~~~~~~ 464 (495)
+....|. .+..++|+|+ |.+|+++.. |..++||+.. |..+...
T Consensus 138 i~~~~~~-~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 138 ISTFEHS-DATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred eeccccC-cEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 4444443 4789999999 889888774 7789999975 6655443
No 244
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=1.4e-06 Score=80.86 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=77.2
Q ss_pred CcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 377 NIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
..|+++.|.+||..+++++. |..|.|||.+++.. .++. ....+.++-+.|+|| +.+|+.+.-|+..++|.-
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~------~pL~-~~glgg~slLkwSPd-gd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK------IPLI-PKGLGGFSLLKWSPD-GDVLFAATCDAVFRLWQE 267 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc------cccc-ccCCCceeeEEEcCC-CCEEEEecccceeeeehh
Confidence 78999999999999999885 68899999999721 2222 234466889999999 999999999999999965
Q ss_pred CCC-cceeecccccCcEEEEEeecCCCCeE-EEeeCC
Q 048199 456 TTQ-QSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDD 490 (495)
Q Consensus 456 ~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D 490 (495)
... ....-.- -.+.|...+|+| .|.+| ++.+..
T Consensus 268 ~q~wt~erw~l-gsgrvqtacWsp-cGsfLLf~~sgs 302 (445)
T KOG2139|consen 268 NQSWTKERWIL-GSGRVQTACWSP-CGSFLLFACSGS 302 (445)
T ss_pred cccceecceec-cCCceeeeeecC-CCCEEEEEEcCC
Confidence 432 2222222 244899999999 77755 444433
No 245
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.2e-08 Score=90.67 Aligned_cols=49 Identities=27% Similarity=0.614 Sum_probs=42.1
Q ss_pred CCccccccccchhh-h------------ccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 50 DKDMLCPICMQIIK-E------------AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 50 ~~~l~C~IC~~~~~-~------------Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
..+-.|.||+|.+- . |+-|||||.|...|+..|++.+++||+||.++.-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 35678999999843 2 4789999999999999999999999999999643
No 246
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=5.5e-07 Score=91.36 Aligned_cols=127 Identities=11% Similarity=0.145 Sum_probs=84.1
Q ss_pred hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecC
Q 048199 347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMP 423 (495)
Q Consensus 347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~ 423 (495)
+..+.+||..... ...+. .|...|.+..|+|+|+.|+..+.+ ..|.+||+.++.. ..+..
T Consensus 183 ~~~i~i~d~dg~~----~~~lt-----~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~------~~l~~-- 245 (429)
T PRK01742 183 PYEVRVADYDGFN----QFIVN-----RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR------KVVAS-- 245 (429)
T ss_pred eEEEEEECCCCCC----ceEec-----cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce------EEEec--
Confidence 4567777764221 12222 567789999999999999887654 3699999987611 11111
Q ss_pred CCCCeEEEEEcCCCCCEEEEe-cCCCcEEEE--eCCCCcceeecccccCcEEEEEeecCCCCeEEEee-CCCcE
Q 048199 424 TRSKLSCLSWNKFSKNRIASS-DYEGIVTVW--DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS-DDCKV 493 (495)
Q Consensus 424 ~~~~i~~~~~~p~~~~~l~sg-~~dg~v~iw--d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s-~D~~v 493 (495)
..+....++|+|| +..|+.+ +.+|.+.|| |+.++. +..+..|...+....|+| ||..|+.++ .++.+
T Consensus 246 ~~g~~~~~~wSPD-G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~ 316 (429)
T PRK01742 246 FRGHNGAPAFSPD-GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSP 316 (429)
T ss_pred CCCccCceeECCC-CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC-CCCEEEEEECCCCCc
Confidence 1223346899999 7766654 568876665 655544 455666777788999999 998777665 45543
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.50 E-value=8.9e-07 Score=87.22 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=96.3
Q ss_pred chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC
Q 048199 344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP 423 (495)
Q Consensus 344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 423 (495)
|..-+.+.+++. ......+.+.++ +|-+.|.++.++.+-..|.|++.|+.+-+|+.... ........
T Consensus 76 gt~~g~v~~ys~---~~g~it~~~st~---~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-------~~~~~~~~ 142 (541)
T KOG4547|consen 76 GTPQGSVLLYSV---AGGEITAKLSTD---KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-------VIIRIWKE 142 (541)
T ss_pred ecCCccEEEEEe---cCCeEEEEEecC---CCCCcceeeecccccCceEecCCceeEEEEecccc-------eeeeeecc
Confidence 333334444444 223334444433 68999999999999999999999999999999886 11112223
Q ss_pred CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCC-----CCeEEEe
Q 048199 424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE-----PSMLVSG 487 (495)
Q Consensus 424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~-----g~~l~s~ 487 (495)
....+.+++++|| +.++++++ +.|++||+++++.+.+|.||.++|+++.|.. + |.++.++
T Consensus 143 ~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-~~~g~~G~~vLss 207 (541)
T KOG4547|consen 143 QKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-LIDGIIGKYVLSS 207 (541)
T ss_pred CCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-eccccccceeeec
Confidence 4456889999999 88999987 7999999999999999999999999999987 5 5555554
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.49 E-value=1.3e-06 Score=78.99 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=86.8
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC-C
Q 048199 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT-T 457 (495)
Q Consensus 379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~-~ 457 (495)
..++.|++.+..++++-.+|.+.+-+.... ..........|.-.+|.+.|+-.+.+++++|+.||.+..||++ .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 457788898888999999999985554443 0111112335777899999987778899999999999999999 3
Q ss_pred Ccceee-cccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 458 QQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 458 ~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+..+.. ..-|...|.++.-+|..+.+|+||++|.+|++
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV 237 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence 444433 55688899999988878999999999999874
No 249
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.6e-08 Score=92.12 Aligned_cols=46 Identities=26% Similarity=0.625 Sum_probs=40.4
Q ss_pred cccccccchhhhc---cccCCCCccchhhHHhhhcCCC-CCCCCCCcCcc
Q 048199 53 MLCPICMQIIKEA---FLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTN 98 (495)
Q Consensus 53 l~C~IC~~~~~~P---v~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~ 98 (495)
.+|.||+|.|+.- ++|||+|.|+..||..|+.... .||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4899999999964 5899999999999999999885 49999987653
No 250
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.48 E-value=6.8e-07 Score=57.04 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=30.4
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFD 404 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd 404 (495)
+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 8999999999999999999999999999997
No 251
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.46 E-value=2.1e-07 Score=88.91 Aligned_cols=110 Identities=17% Similarity=0.203 Sum_probs=96.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
...|..+.|-|.--+|++++..|.++.-|+.++ ..+..+ ...+.+..++-+|. +.++-.|..+|+|.+|.
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G--------klVa~~~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG--------KLVASIRTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWS 279 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechh--------hhhHHHHccCCccchhhcCCc-cceEEEcCCCceEEecC
Confidence 467889999998889999999999999999998 333333 34456777888999 78999999999999999
Q ss_pred CCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..+.+++..+..|.++|.+|++.+ +|+++||++.|..|+|
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kI 319 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKI 319 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeE
Confidence 999999999999999999999999 9999999999999986
No 252
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=1.6e-06 Score=89.09 Aligned_cols=116 Identities=12% Similarity=0.179 Sum_probs=91.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
.|+-.+++.++||.++++++|..||.|.+|.--..... ..+....-=|...|++++|+++ |.+|+||+..|.+-+|
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~---~~t~t~lHWH~~~V~~L~fS~~-G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD---SETCTLLHWHHDEVNSLSFSSD-GAYLLSGGREGVLVLW 278 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccc---cccceEEEecccccceeEEecC-CceEeecccceEEEEE
Confidence 57878999999999999999999999999965431000 0111122237789999999999 9999999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
-+.++. .+-+..-.++|..+.++| |+.+.+....|..|.+
T Consensus 279 q~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 279 QLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHL 318 (792)
T ss_pred eecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence 999887 333444578999999999 9988888888887753
No 253
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=8.9e-07 Score=85.18 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=124.2
Q ss_pred hhhccCCCCccccccc-cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEe
Q 048199 319 RQMANQPHTKQESDKN-IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAG 395 (495)
Q Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s 395 (495)
....+..+.+.++... ...+..+.+|++|..+.+|+..+. .+...+.. ||...|..-.|-| +..-+++++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~---~~~l~f~S----GH~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG---SPKLSFES----GHCNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhcc---Cccccccc----ccccchhhhhccCCCCCcCceecc
Confidence 3344556666555544 456788999999999999998532 23334433 7888898889998 456899999
Q ss_pred CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc---cccC---
Q 048199 396 VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE---EHEK--- 469 (495)
Q Consensus 396 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~---~h~~--- 469 (495)
.||.|++=.+..... .........|.++|.-++.-|+....|+|++.|+.|.-+|++++.+...+. .+..
T Consensus 207 ~dgqvr~s~i~~t~~----~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 207 RDGQVRVSEILETGY----VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred ccCceeeeeeccccc----eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 999999988765411 112334446889999999999988999999999999999999876544432 2333
Q ss_pred cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 470 RAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 470 ~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..++++..|.+.+.+++|+.|..+++
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~Rv 308 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARV 308 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhh
Confidence 56889999988889999999987764
No 254
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.40 E-value=5.6e-07 Score=86.02 Aligned_cols=94 Identities=14% Similarity=0.236 Sum_probs=79.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
..+.+..+.-+|-+..+-+|...|+|.+|.-... .|+. ...|.++|.++++++. |.|++|.+.|..|+||
T Consensus 250 ~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk--------ePLvKiLcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIW 320 (545)
T KOG1272|consen 250 GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK--------EPLVKILCHRGPVSSIAVDRG-GRYMATTGLDRKVKIW 320 (545)
T ss_pred cCCccchhhcCCccceEEEcCCCceEEecCCCCc--------chHHHHHhcCCCcceEEECCC-CcEEeecccccceeEe
Confidence 4678888889999999999999999999998875 4443 4478999999999999 9999999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeec
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSR 478 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~ 478 (495)
|++.-..+.++.. ..+...++||.
T Consensus 321 DlR~~~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 321 DLRNFYQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred eeccccccceeec-CCCcccccccc
Confidence 9998776666654 45677788886
No 255
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.35 E-value=1.8e-05 Score=75.74 Aligned_cols=48 Identities=27% Similarity=0.695 Sum_probs=39.7
Q ss_pred CCCCccccccccchhhhcc----ccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 48 ELDKDMLCPICMQIIKEAF----LTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~Pv----~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
.+.|.-+||||++.+.+-+ ++.|-|+|...|+.+|+. .+||+||....
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 3455668999999998764 568999999999999975 58999997665
No 256
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2e-07 Score=83.06 Aligned_cols=48 Identities=33% Similarity=0.803 Sum_probs=40.7
Q ss_pred CCccccccccchhhhcccc-CCCCccchhhHHhhhcC--CCCCCCCCCcCc
Q 048199 50 DKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRN--KSDCPCCGHYLT 97 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~--~~~CP~Cr~~~~ 97 (495)
....+||+|++.++.|.+. +|||.||+.||...... ..+||.|+..+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4567899999999999855 79999999999976554 479999999875
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.35 E-value=3.4e-06 Score=88.28 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=88.6
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee
Q 048199 383 EFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM 462 (495)
Q Consensus 383 ~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~ 462 (495)
-++++.-++++|+.-+.|.+|+.... ..++...+|.+.|.++.|+-| |.+++|.|.|.++++|++.+++.+.
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~d-------n~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHED-------NKPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLG 211 (967)
T ss_pred eccCcEEEEEeccccccEEEEecccc-------CCcceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccC
Confidence 34556668999999999999999843 345567799999999999999 9999999999999999999987766
Q ss_pred -ecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 463 -EYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 463 -~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+.-+|+.+||.++|.| + .++|++.|.+.++
T Consensus 212 ~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 212 CTGFGHSARVWACCFLP-N--RIITVGEDCTCRV 242 (967)
T ss_pred cccccccceeEEEEecc-c--eeEEeccceEEEE
Confidence 7779999999999998 5 9999999988763
No 258
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.32 E-value=9.1e-07 Score=89.05 Aligned_cols=134 Identities=25% Similarity=0.369 Sum_probs=103.1
Q ss_pred HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCC
Q 048199 349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRS 426 (495)
Q Consensus 349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~ 426 (495)
...+|.+...+....-..+. ||+..|+++.|+| +...+++++.|..+..||+++. +.++..+. -..
T Consensus 92 kaiiwnlA~ss~~aIef~lh-----ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp-------~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 92 KAIIWNLAKSSSNAIEFVLH-----GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP-------HRPFYSTSSWRS 159 (1081)
T ss_pred hhhhhhhhcCCccceEEEEe-----cCccceeccccCCCCCcceeeccccccceeeeccCC-------Ccceeeeecccc
Confidence 34588876543333233333 8999999999998 4568999999999999999997 56666553 345
Q ss_pred CeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 427 KLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 427 ~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
....++|+-.+++.+++. ....|.+||.+.| .++..+++|...|++++|+..-...+.+.+.|++|+.
T Consensus 160 ~asqVkwnyk~p~vlass-hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASS-HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cCceeeecccCcchhhhc-cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 567899987757666655 4568999999875 6889999999999999998644567889999999874
No 259
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.31 E-value=1.4e-06 Score=82.13 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=70.9
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
+.||-+.+++++|+||+++++|+..|..|||-.+... ..-....++|..-|..++.-++ ..|+||+.|++|+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~------f~IesfclGH~eFVS~isl~~~--~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT------FVIESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc------cchhhhccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence 4489999999999999999999999999999888764 0112244578888999998865 4689999999999
Q ss_pred EEeCCCCcceeec
Q 048199 452 VWDVTTQQSVMEY 464 (495)
Q Consensus 452 iwd~~~~~~~~~~ 464 (495)
+||+.+|+++.++
T Consensus 219 ~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 219 LWDITSGKLLDTC 231 (390)
T ss_pred EEecccCCccccc
Confidence 9999999887665
No 260
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.31 E-value=5.6e-07 Score=80.79 Aligned_cols=62 Identities=31% Similarity=0.707 Sum_probs=47.6
Q ss_pred cccccccchhhhcccc-CCCCccchhhHHhhhcC-CCCCCCCCC-cCccCCCcchHHHHHHHHHH
Q 048199 53 MLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRN-KSDCPCCGH-YLTNNQLYPNFLLDKLLKKT 114 (495)
Q Consensus 53 l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~-~~~CP~Cr~-~~~~~~l~~n~~l~~~v~~~ 114 (495)
|.||.|..++++|+-+ .|||+||..||...+-. .+.||.|.+ .+-++.|.+.+....-|+.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~ 339 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKA 339 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHH
Confidence 8999999999999977 58999999999976554 479999975 34456677766554444444
No 261
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=2.8e-06 Score=83.40 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=104.3
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccc-cccC-----CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGD-IFHS-----ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~-~~~h-----~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
...++.|..++.|..||...-+... .+..+. +..| ...|+++.|+.+|-.++.|..+|.|.|||+++.
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~---~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~--- 260 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVG---TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS--- 260 (703)
T ss_pred cceEEecccCceEEEecchhhhhhe---eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC---
Confidence 3446778889999999985333322 222211 1122 446999999999999999999999999999986
Q ss_pred CCCcCCCeeecCC--CCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 412 PADVHCPVVEMPT--RSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 412 ~~~~~~~~~~~~~--~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
.|...-.| .-+|..+.|.+.+ ++.++|.+ ...++|||-.+|.....+.. +..++.+|+-| ++.++++|-
T Consensus 261 -----~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p-~sGm~f~An 332 (703)
T KOG2321|consen 261 -----KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEP-TSDLNDFCFVP-GSGMFFTAN 332 (703)
T ss_pred -----CceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccc-cCCcCceeeec-CCceEEEec
Confidence 55554444 3478999997652 34566654 57899999999999888875 44599999999 888999987
Q ss_pred CCCcE
Q 048199 489 DDCKV 493 (495)
Q Consensus 489 ~D~~v 493 (495)
.+..+
T Consensus 333 e~~~m 337 (703)
T KOG2321|consen 333 ESSKM 337 (703)
T ss_pred CCCcc
Confidence 76654
No 262
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.30 E-value=2.5e-07 Score=77.92 Aligned_cols=46 Identities=35% Similarity=0.872 Sum_probs=41.8
Q ss_pred ccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
.+.|.||...|..||.+.|||.||..|..+-.+....|-+|++...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 4789999999999999999999999999888777889999998753
No 263
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.8e-07 Score=89.42 Aligned_cols=52 Identities=31% Similarity=0.825 Sum_probs=47.1
Q ss_pred cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+.+..++.|-||...+.+|+++||||+||..||.+.+.....||.||.++..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3457789999999999999999999999999999988888899999998764
No 264
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.28 E-value=4.1e-07 Score=66.93 Aligned_cols=48 Identities=27% Similarity=0.667 Sum_probs=38.0
Q ss_pred Cccccccccchhhh------------cc-ccCCCCccchhhHHhhhcCC---CCCCCCCCcCcc
Q 048199 51 KDMLCPICMQIIKE------------AF-LTACGHSFCYMCIITHLRNK---SDCPCCGHYLTN 98 (495)
Q Consensus 51 ~~l~C~IC~~~~~~------------Pv-~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~ 98 (495)
++-.|+||...|.- |+ .-.|+|.|...||.+|++.+ +.||.||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 35668888888862 33 34799999999999999864 699999998653
No 265
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.28 E-value=1.1e-05 Score=79.11 Aligned_cols=136 Identities=10% Similarity=0.075 Sum_probs=84.3
Q ss_pred hhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCCeeecCC
Q 048199 346 ADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCPVVEMPT 424 (495)
Q Consensus 346 ~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 424 (495)
.+..+.+|++........+.... ..+....+.|+|++++|++++. ++.|.+|+++..... ...+....+
T Consensus 55 ~~~~i~~~~~~~~g~l~~~~~~~------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~----~~~~~~~~~ 124 (330)
T PRK11028 55 PEFRVLSYRIADDGALTFAAESP------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP----VAPIQIIEG 124 (330)
T ss_pred CCCcEEEEEECCCCceEEeeeec------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC----CCceeeccC
Confidence 34566677774212222222222 1234678999999998887764 889999999743100 112222223
Q ss_pred CCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCccee-------ecccccCcEEEEEeecCCCCeEEEeeC-CCcEe
Q 048199 425 RSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVM-------EYEEHEKRAWSVDFSRTEPSMLVSGSD-DCKVL 494 (495)
Q Consensus 425 ~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~-------~~~~h~~~v~~v~~~~~~g~~l~s~s~-D~~v~ 494 (495)
.....+++|+|+ +.++ ++...++.|.+||+.+...+. .+.. ......++|+| +|.+++++.. +++|.
T Consensus 125 ~~~~~~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~p-dg~~lyv~~~~~~~v~ 200 (330)
T PRK11028 125 LEGCHSANIDPD-NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHP-NQQYAYCVNELNSSVD 200 (330)
T ss_pred CCcccEeEeCCC-CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECC-CCCEEEEEecCCCEEE
Confidence 345678899999 6666 556667999999997632221 1111 23456799999 9999887775 77664
No 266
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.8e-07 Score=83.40 Aligned_cols=46 Identities=28% Similarity=0.658 Sum_probs=41.1
Q ss_pred cccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCcc
Q 048199 53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTN 98 (495)
Q Consensus 53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~ 98 (495)
-.|+||+....-|+.++|+|.||+-||+...... ..||+||.++..
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 4599999999999999999999999999877665 469999999864
No 267
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.8e-07 Score=82.27 Aligned_cols=47 Identities=28% Similarity=0.632 Sum_probs=40.1
Q ss_pred Cccccccccchhhhc---cccCCCCccchhhHHhhhc-CCCCCCCCCCcCc
Q 048199 51 KDMLCPICMQIIKEA---FLTACGHSFCYMCIITHLR-NKSDCPCCGHYLT 97 (495)
Q Consensus 51 ~~l~C~IC~~~~~~P---v~l~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~~ 97 (495)
....|.||++-|..- +.+||-|.|+..|+++|+. ...+||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 347899999999732 4889999999999999998 4579999998874
No 268
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.25 E-value=1.2e-05 Score=78.81 Aligned_cols=138 Identities=11% Similarity=0.061 Sum_probs=87.3
Q ss_pred chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEE-eCCCcEEEEEccccccCCCCcCCCeeec
Q 048199 344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATA-GVSRRIKVFDFASVVNEPADVHCPVVEM 422 (495)
Q Consensus 344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 422 (495)
...|+++.+|++....+...+..+.. .+....+.|+|++++|+.+ ..++.|.+|+++.. ..+ ......
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~~------~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l----~~~~~~ 76 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVDV------PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GAL----TFAAES 76 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEec------CCCCccEEECCCCCEEEEEECCCCcEEEEEECCC-Cce----EEeeee
Confidence 34567888999843233334444432 3446678999999987665 45889999999732 000 111222
Q ss_pred CCCCCeEEEEEcCCCCCEEEEec-CCCcEEEEeCCC-Cc---ceeecccccCcEEEEEeecCCCCeEEEee-CCCcEeC
Q 048199 423 PTRSKLSCLSWNKFSKNRIASSD-YEGIVTVWDVTT-QQ---SVMEYEEHEKRAWSVDFSRTEPSMLVSGS-DDCKVLY 495 (495)
Q Consensus 423 ~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd~~~-~~---~~~~~~~h~~~v~~v~~~~~~g~~l~s~s-~D~~v~l 495 (495)
...+....+.|+|+ +.+|++++ .++.|.+||+.+ +. .+..+.+ ......++|+| ++.++++++ .++.|.+
T Consensus 77 ~~~~~p~~i~~~~~-g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p-~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 77 PLPGSPTHISTDHQ-GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP-DNRTLWVPCLKEDRIRL 152 (330)
T ss_pred cCCCCceEEEECCC-CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC-CCCEEEEeeCCCCEEEE
Confidence 23345678999999 77777665 488999999964 32 2333332 23467788999 888875554 5677653
No 269
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=1.7e-06 Score=79.86 Aligned_cols=118 Identities=22% Similarity=0.306 Sum_probs=91.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
+..+-|.++.|+..+++++.|...|.|..+|++.. .++...+...+.|.+.|+++..-..++.+|++.+.+|+|++|
T Consensus 250 ~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r---nqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 250 QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR---NQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred ccchhHHHHHhcccCCeeEecccCCcEEEEEeeec---ccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 34678889999999999999999999999999876 122345667778999999988766338899999999999999
Q ss_pred eCCCCcc---eeecccccCcEEE--EEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQS---VMEYEEHEKRAWS--VDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~---~~~~~~h~~~v~~--v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|.+.-++ +.++.||-..-.- +...+ ....++++++|...||
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRI 372 (425)
T ss_pred eehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEE
Confidence 9987555 9999999543222 23445 4567788888887664
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.23 E-value=1.7e-06 Score=55.17 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=34.1
Q ss_pred CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 458 QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 458 ~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++++.++.+|.+.|++++|+| ++.+|+||+.|++|+|
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~v 37 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRV 37 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEE
Confidence 357889999999999999999 9999999999999985
No 271
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=4.9e-06 Score=84.50 Aligned_cols=107 Identities=12% Similarity=0.003 Sum_probs=73.4
Q ss_pred cCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.|...+.+..|+|+|+.|+.++ .++.+.||+++... .......+.. ....|+|+ +..|+.++.++ +.+
T Consensus 289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~-------~~~~~l~~~~--~~~~~SpD-G~~ia~~~~~~-i~~ 357 (429)
T PRK01742 289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG-------GGASLVGGRG--YSAQISAD-GKTLVMINGDN-VVK 357 (429)
T ss_pred cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC-------CCeEEecCCC--CCccCCCC-CCEEEEEcCCC-EEE
Confidence 4556788999999999766544 67889999886531 1111222322 45789999 77887777665 555
Q ss_pred EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
||+.++........+ ...++.|+| ||.+|+.++.++.++
T Consensus 358 ~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~ 396 (429)
T PRK01742 358 QDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGK 396 (429)
T ss_pred EECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCce
Confidence 999887654322222 235678999 999999999887654
No 272
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=1.6e-05 Score=80.98 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=76.7
Q ss_pred cCCCcEEEEEEccCCCEEEEEeC---CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCE-EEEecCCCc
Q 048199 374 HSANIVSSIEFDRDDQLFATAGV---SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNR-IASSDYEGI 449 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~-l~sg~~dg~ 449 (495)
.|...+.+..|+|||+.|+..+. +..|.+||+.++ .......+.+.+....|+|| +.. +++.+.+|.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g--------~~~~l~~~~g~~~~~~~SPD-G~~la~~~~~~g~ 269 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG--------QRELVGNFPGMTFAPRFSPD-GRKVVMSLSQGGN 269 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC--------cEEEeecCCCcccCcEECCC-CCEEEEEEecCCC
Confidence 56778999999999998887653 468999999876 11122234456678899999 654 456666665
Q ss_pred --EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 450 --VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 450 --v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
|.+||+.++.. ..+..+........|+| ||..|+..+.
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s~ 309 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP-DGSQIVFESD 309 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcC-CCCEEEEEEC
Confidence 77778886654 45666666677899999 9998887764
No 273
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.16 E-value=2.9e-06 Score=75.49 Aligned_cols=68 Identities=22% Similarity=0.452 Sum_probs=61.1
Q ss_pred CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 426 SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 426 ~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
..|.+++-||...+++++|+.||.+-+||.+... ++..+..|+..||.|-|+|.++..|++++.||.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence 4489999999978899999999999999999864 5567789999999999999999999999999976
No 274
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.15 E-value=1e-05 Score=86.08 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=101.2
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccc-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIF-HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
+.+++|++|++|++|+..+..... .+.+..... --.+.+..+.+.+.++.||.++.||.|++.+++...... ....
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~--~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~-~~~~ 1138 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEG--GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSK-RVAT 1138 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCc--ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccc-ceee
Confidence 568899999999999975432221 111110000 135788999999999999999999999999998730000 0000
Q ss_pred Cee--ecCCCCC-eEEEEEcCCCCC-EEEEecCCCcEEEEeCCCCcceeeccc--ccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 418 PVV--EMPTRSK-LSCLSWNKFSKN-RIASSDYEGIVTVWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 418 ~~~--~~~~~~~-i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
... .....+. +..-+|....+. .++.+...+.|..||+++...+.+++. ..+.|++++.+| .+.+++.|+.-|
T Consensus 1139 ~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1139 QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRG 1217 (1431)
T ss_pred eeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCc
Confidence 000 1112222 333344433344 788888899999999998766655543 357899999999 999999999888
Q ss_pred cEe
Q 048199 492 KVL 494 (495)
Q Consensus 492 ~v~ 494 (495)
.+-
T Consensus 1218 ~l~ 1220 (1431)
T KOG1240|consen 1218 QLV 1220 (1431)
T ss_pred eEE
Confidence 753
No 275
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=4.7e-06 Score=80.31 Aligned_cols=115 Identities=17% Similarity=0.296 Sum_probs=93.7
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee--cCCCCCeEEEEEcCCC-CCEEEEecCCC
Q 048199 372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE--MPTRSKLSCLSWNKFS-KNRIASSDYEG 448 (495)
Q Consensus 372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p~~-~~~l~sg~~dg 448 (495)
+.+|.+.|..|.|+..|..|++||.|..|.+||+... .+... -+|...|....|-|.. ...|++.+.||
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~--------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG--------SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhcc--------CcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 3389999999999999999999999999999999987 22222 2566777778887763 45789999999
Q ss_pred cEEEEeCCC-C--cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 449 IVTVWDVTT-Q--QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 449 ~v~iwd~~~-~--~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.|++=-+.. + +....+..|.++|..++.-|..++.|.|++.|+.|+
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~ 258 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVF 258 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCccccccccccee
Confidence 999887653 3 234566779999999999997888999999999875
No 276
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.13 E-value=1.8e-05 Score=80.30 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=74.0
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCCc
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGI 449 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~ 449 (495)
.+...+.+.+|+|+|+.|+..+.+ ..|.+||+.++ .........+.+....|+|| +..| ++.+.+|.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g--------~~~~l~~~~g~~~~~~~SPD-G~~la~~~~~~g~ 263 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG--------RRRVVANFKGSNSAPAWSPD-GRTLAVALSRDGN 263 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC--------CEEEeecCCCCccceEECCC-CCEEEEEEccCCC
Confidence 456778999999999988877643 35999999876 11112223345668899999 6555 56788888
Q ss_pred EEEEeCC-CCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 450 VTVWDVT-TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 450 v~iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
..||.+. .+.....+..|........|+| ||..|+..+.
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~ 303 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSD 303 (427)
T ss_pred ceEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEec
Confidence 7777653 2333555665666667789999 9998877664
No 277
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.13 E-value=5.5e-05 Score=67.28 Aligned_cols=50 Identities=32% Similarity=0.702 Sum_probs=36.9
Q ss_pred cccccccchhh-hcc-ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcch
Q 048199 53 MLCPICMQIIK-EAF-LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN 104 (495)
Q Consensus 53 l~C~IC~~~~~-~Pv-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 104 (495)
..|-.|+-... +|. ++.|+|+||..|..-... ..||.|++++....+..+
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc--cccccccceeeeeecccc
Confidence 46887776665 343 679999999999876432 389999999876555544
No 278
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=6.6e-07 Score=92.76 Aligned_cols=46 Identities=30% Similarity=0.731 Sum_probs=42.5
Q ss_pred ccccccccchhhh-----ccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 52 DMLCPICMQIIKE-----AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 52 ~l~C~IC~~~~~~-----Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
...|+||.+.+.. |..++|||.||..|+..|++...+||.||..+.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 5789999999998 789999999999999999999999999999543
No 279
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=2.4e-05 Score=79.56 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=74.2
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCC-
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEG- 448 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg- 448 (495)
.|...+.+..|+|+|+.|+..+.+ ..|.+||+.++ .........+...+..|+|| +..| ++.+.+|
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g--------~~~~l~~~~g~~~~~~~SpD-G~~l~~~~s~~g~ 271 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG--------QRELVASFRGINGAPSFSPD-GRRLALTLSRDGN 271 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC--------CEEEeccCCCCccCceECCC-CCEEEEEEeCCCC
Confidence 456678999999999998887643 46999999876 11111122334557899999 6544 5656565
Q ss_pred -cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 449 -IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 449 -~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.|.+||+.++.. ..+..|.......+|+| ||..|+.++.
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp-DG~~l~f~sd 311 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP-DGKSIYFTSD 311 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEEC
Confidence 599999987764 44555655567889999 9998887764
No 280
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=6e-05 Score=72.45 Aligned_cols=62 Identities=27% Similarity=0.516 Sum_probs=52.4
Q ss_pred cccccccchhhh------ccccCCCCccchhhHHhhhcCC-CCCCCCCCcCcc-----CCCcchHHHHHHHHHH
Q 048199 53 MLCPICMQIIKE------AFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTN-----NQLYPNFLLDKLLKKT 114 (495)
Q Consensus 53 l~C~IC~~~~~~------Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~-----~~l~~n~~l~~~v~~~ 114 (495)
+.|-||.+.|.. |..|.|||+||..|+.+.+... ..||.||.+... ..|.+||.+...+...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 579999999973 8899999999999999998876 478999999543 3588999988888775
No 281
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1e-06 Score=79.65 Aligned_cols=45 Identities=27% Similarity=0.723 Sum_probs=41.9
Q ss_pred cccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
+.|-||...|.+||.+.|||.||..|..+.++....|++|.+.+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 459999999999999999999999999999988899999998764
No 282
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.08 E-value=2.2e-06 Score=84.62 Aligned_cols=69 Identities=38% Similarity=0.854 Sum_probs=54.6
Q ss_pred cCCCCccccccccchhhhccc-cCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcc-hHHHHHHHHHHh
Q 048199 47 SELDKDMLCPICMQIIKEAFL-TACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP-NFLLDKLLKKTS 115 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~-l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~-n~~l~~~v~~~~ 115 (495)
..+++.+.|+||..++.+|+. +.|||.||..|+..|....+.||.|+.........+ .......+.++.
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 346888999999999999998 599999999999999999899999998887654443 333344444433
No 283
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.06 E-value=8e-06 Score=72.77 Aligned_cols=74 Identities=14% Similarity=0.267 Sum_probs=62.7
Q ss_pred CcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 377 NIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
..|.+++-|| ..+++++|+.||.+-+||.+.. ..|+..+ .|...++.+-|||.++..|++++.||.+..||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccc-------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 4499999999 5567888999999999999986 3444333 68889999999999999999999999999999
Q ss_pred CCC
Q 048199 455 VTT 457 (495)
Q Consensus 455 ~~~ 457 (495)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 763
No 284
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=5.8e-05 Score=76.58 Aligned_cols=106 Identities=12% Similarity=0.054 Sum_probs=72.7
Q ss_pred cCCCcEEEEEEccCCCEEEEEe---CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEE-EecCCC-
Q 048199 374 HSANIVSSIEFDRDDQLFATAG---VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIA-SSDYEG- 448 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~-sg~~dg- 448 (495)
.+...+.+..|+|||+.|+..+ .+..|.+||+.++ .........+.+....|+|| +..|+ +.+.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G--------~~~~l~~~~~~~~~~~~SPD-G~~La~~~~~~g~ 266 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--------AVRQVASFPRHNGAPAFSPD-GSKLAFALSKTGS 266 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--------CeEEccCCCCCcCCeEECCC-CCEEEEEEcCCCC
Confidence 3456789999999999888654 2457999999876 11111112233456899999 66555 445455
Q ss_pred -cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 449 -IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 449 -~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
.|.+||+.++.... +..+...+....|+| ||..|+..+.+
T Consensus 267 ~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP-DG~~I~f~s~~ 307 (429)
T PRK03629 267 LNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP-DSQNLAYTSDQ 307 (429)
T ss_pred cEEEEEECCCCCEEE-ccCCCCCcCceEECC-CCCEEEEEeCC
Confidence 48899998776543 444445678899999 99988777754
No 285
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4.2e-05 Score=71.75 Aligned_cols=49 Identities=24% Similarity=0.651 Sum_probs=36.2
Q ss_pred cccccccchhhhcc----ccCCCCccchhhHHhhhcCCC---CCCCCCCcCccCCC
Q 048199 53 MLCPICMQIIKEAF----LTACGHSFCYMCIITHLRNKS---DCPCCGHYLTNNQL 101 (495)
Q Consensus 53 l~C~IC~~~~~~Pv----~l~CGH~FC~~Ci~~~~~~~~---~CP~Cr~~~~~~~l 101 (495)
-.|.||-+.+-+-. +-.|||+|.-.|+..|+...+ .||+|+-.+..+.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 35999976664432 335999999999999999764 69999955544433
No 286
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=5.1e-05 Score=75.67 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=61.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
...+.|.+.+++|+...|+.|+.||+|.+||...+. . ......-.++.++|||+ |.+|+.|+.-|.+.+|
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-------t--~~~ka~~~P~~iaWHp~-gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-------T--LLAKAEFIPTLIAWHPD-GAIFVVGSEQGELQCF 326 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-------e--eeeeecccceEEEEcCC-CcEEEEEcCCceEEEE
Confidence 467889999999999999999999999999998761 1 11123345789999999 9999999999999999
Q ss_pred eCC
Q 048199 454 DVT 456 (495)
Q Consensus 454 d~~ 456 (495)
|+.
T Consensus 327 D~A 329 (545)
T PF11768_consen 327 DMA 329 (545)
T ss_pred Eee
Confidence 975
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=6.3e-06 Score=80.49 Aligned_cols=120 Identities=14% Similarity=0.266 Sum_probs=82.9
Q ss_pred ccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199 371 DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV 450 (495)
Q Consensus 371 ~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v 450 (495)
.+.||+..|+.+.--.+.+-|++++.|++|++|.++..........+......|..+|..+.|-.+ ..++++. ||.|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-LRSIASC--DGGI 806 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-cceeeec--cCcc
Confidence 344899999999887788899999999999999998763333333344455578889999999877 5566654 7999
Q ss_pred EEEeCCCCcceeeccc---c--cCcEEEEEeecCCCCeEEEe-eCCCcEeC
Q 048199 451 TVWDVTTQQSVMEYEE---H--EKRAWSVDFSRTEPSMLVSG-SDDCKVLY 495 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~---h--~~~v~~v~~~~~~g~~l~s~-s~D~~v~l 495 (495)
++||.--|+.+..... | .+.|.++- .++..+++.| +...+||+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~--nv~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE--NVDRHILIAGCSAESTVKL 855 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecc--cCcchheeeeccchhhhee
Confidence 9999888887765432 2 22333332 1133444444 55666664
No 288
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.2e-06 Score=57.25 Aligned_cols=45 Identities=29% Similarity=0.714 Sum_probs=39.0
Q ss_pred cccccccchhhhccccCCCCc-cchhhHHhhhc-CCCCCCCCCCcCc
Q 048199 53 MLCPICMQIIKEAFLTACGHS-FCYMCIITHLR-NKSDCPCCGHYLT 97 (495)
Q Consensus 53 l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~-~~~~CP~Cr~~~~ 97 (495)
-.|.||.+-+.|.|.-.|||. .|+.|-.+.+. ....||.||+++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 469999999999999999997 49999888877 4579999999863
No 289
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=5.1e-05 Score=78.38 Aligned_cols=144 Identities=10% Similarity=0.007 Sum_probs=99.2
Q ss_pred cccccCcccchhhHHhhhhhhhc-ccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTR-YSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
.+.+..+++|..|+.+.+|.-.. .+.......++ .|...|.+++|+++|.+|+|||..+-+-+|.+.++.
T Consensus 214 spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-----WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---- 284 (792)
T KOG1963|consen 214 SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-----WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---- 284 (792)
T ss_pred ccccceEEEeccCCcEEEEeccccccccccceEEE-----ecccccceeEEecCCceEeecccceEEEEEeecCCC----
Confidence 34556677888889999997422 11112233333 699999999999999999999999999999999982
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-----------cCcEEEEEeecCCCC
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-----------EKRAWSVDFSRTEPS 482 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-----------~~~v~~v~~~~~~g~ 482 (495)
+...-.-.++|..+.|+|| +.+.+....|..|.+-...+.....++.|- .+-.+.++++| ...
T Consensus 285 ----kqfLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~ 358 (792)
T KOG1963|consen 285 ----KQFLPRLGSPILHIVVSPD-SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTN 358 (792)
T ss_pred ----cccccccCCeeEEEEEcCC-CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCC
Confidence 2222235678999999999 888888888999999887554433333321 23345566666 444
Q ss_pred eEEEeeCCCcE
Q 048199 483 MLVSGSDDCKV 493 (495)
Q Consensus 483 ~l~s~s~D~~v 493 (495)
.++-.+..|+|
T Consensus 359 ~~vln~~~g~v 369 (792)
T KOG1963|consen 359 SLVLNGHPGHV 369 (792)
T ss_pred ceeecCCCceE
Confidence 44444444443
No 290
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.92 E-value=0.00015 Score=71.61 Aligned_cols=124 Identities=16% Similarity=0.157 Sum_probs=78.8
Q ss_pred hhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCC
Q 048199 345 LADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT 424 (495)
Q Consensus 345 ~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 424 (495)
.+++++.+.|.. ..+.+..+..+ ...-..+.|+|||++++.++.|+.|.++|+.+. ..+..+..
T Consensus 13 ~~~~~v~viD~~---t~~~~~~i~~~-----~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--------~~v~~i~~ 76 (369)
T PF02239_consen 13 RGSGSVAVIDGA---TNKVVARIPTG-----GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--------KVVATIKV 76 (369)
T ss_dssp GGGTEEEEEETT---T-SEEEEEE-S-----TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--------SEEEEEE-
T ss_pred cCCCEEEEEECC---CCeEEEEEcCC-----CCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--------cEEEEEec
Confidence 344566666653 34456666542 222345779999999999999999999999997 34455555
Q ss_pred CCCeEEEEEcCCCCCEEEEec-CCCcEEEEeCCCCcceeecccc-------cCcEEEEEeecCCCC-eEEE
Q 048199 425 RSKLSCLSWNKFSKNRIASSD-YEGIVTVWDVTTQQSVMEYEEH-------EKRAWSVDFSRTEPS-MLVS 486 (495)
Q Consensus 425 ~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~-~l~s 486 (495)
.....++++++| |.+++++. ..+.|.|+|..+.+.++.+... ..++.++..++ ... ++++
T Consensus 77 G~~~~~i~~s~D-G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~ 145 (369)
T PF02239_consen 77 GGNPRGIAVSPD-GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVN 145 (369)
T ss_dssp SSEEEEEEE--T-TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEE
T ss_pred CCCcceEEEcCC-CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEE
Confidence 556789999999 77777665 6889999999999988887543 34677777777 444 4444
No 291
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.90 E-value=0.00012 Score=67.42 Aligned_cols=129 Identities=17% Similarity=0.186 Sum_probs=75.0
Q ss_pred hhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCc---CCCeee
Q 048199 346 ADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADV---HCPVVE 421 (495)
Q Consensus 346 ~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~---~~~~~~ 421 (495)
.|..|.+|++.. ..--..+. .....+.++.|+|+|+ +|.+...|-.|.||.+.+....+..+ ......
T Consensus 69 k~~~vqvwsl~Q---pew~ckId-----eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~ 140 (447)
T KOG4497|consen 69 KDPKVQVWSLVQ---PEWYCKID-----EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYA 140 (447)
T ss_pred ccceEEEEEeec---ceeEEEec-----cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEE
Confidence 344677787642 12222233 2357788999999995 67788889999999998751110000 000000
Q ss_pred cC----------------------------------CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199 422 MP----------------------------------TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH 467 (495)
Q Consensus 422 ~~----------------------------------~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h 467 (495)
+. ..-..+.+.|+|| |+. +-|||.--.-.+. .-|
T Consensus 141 f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-g~~---------laVwd~~Leykv~--aYe 208 (447)
T KOG4497|consen 141 FHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-GNW---------LAVWDNVLEYKVY--AYE 208 (447)
T ss_pred ECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-CcE---------EEEecchhhheee--eee
Confidence 00 0012345566666 433 4456532111111 223
Q ss_pred -cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 468 -EKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 468 -~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.-.+..++|+| .+.+|+.|+.|+.+||
T Consensus 209 ~~lG~k~v~wsP-~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 209 RGLGLKFVEWSP-CNQFLAVGSYDQMLRV 236 (447)
T ss_pred eccceeEEEecc-ccceEEeeccchhhhh
Confidence 24688999999 9999999999999875
No 292
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.90 E-value=0.00011 Score=74.38 Aligned_cols=105 Identities=16% Similarity=0.061 Sum_probs=72.4
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEecCCC-
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSDYEG- 448 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~dg- 448 (495)
.+...+.+..|+|+|++|+.++.+ ..|.+||+.++ .......+.+.+.++.|+|| +. ++++.+.++
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g--------~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~ 257 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG--------QREKVASFPGMNGAPAFSPD-GSKLAVSLSKDGN 257 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC--------CEEEeecCCCCccceEECCC-CCEEEEEECCCCC
Confidence 455678899999999998877654 47999999876 11122223445667899999 55 445665555
Q ss_pred -cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 449 -IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 449 -~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.|.+||+.++.. ..+..+........|+| +|..|+..+.
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~-dg~~l~~~s~ 297 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSP-DGKSIAFTSD 297 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECC-CCCEEEEEEC
Confidence 588899887643 34444555556778999 9988876664
No 293
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.89 E-value=1.1e-05 Score=73.64 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=101.3
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEcccc-c----cC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASV-V----NE 411 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~-~----~~ 411 (495)
.+.+. ..+|..+.+|.+.-.+..-.+.+++...+..-+..|++..||| ..+.|...+..|.|++-|++.. . ..
T Consensus 184 ~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 34444 4478899999987666666778887544333456789999999 5667888888999999999853 0 00
Q ss_pred -CCCcCCCe---eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Ccceeeccccc------------CcE---
Q 048199 412 -PADVHCPV---VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHE------------KRA--- 471 (495)
Q Consensus 412 -~~~~~~~~---~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~------------~~v--- 471 (495)
+.....++ ....-.+.|..+.|++. |.+|++-++ -+|+|||++. ..++.++.-|. +.|
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~n-gryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDN-GRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCC-CcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 00000000 01112346888999998 899999987 4999999985 45677765442 223
Q ss_pred EEEEeecCCCCeEEEeeCCCc
Q 048199 472 WSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 472 ~~v~~~~~~g~~l~s~s~D~~ 492 (495)
..+.|+. +...++|||+...
T Consensus 341 FeisfSg-d~~~v~sgsy~NN 360 (460)
T COG5170 341 FEISFSG-DDKHVLSGSYSNN 360 (460)
T ss_pred EEEEecC-Ccccccccccccc
Confidence 3467787 7788888887543
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.85 E-value=5.7e-05 Score=71.48 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=74.5
Q ss_pred EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-cccc
Q 048199 390 LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-EEHE 468 (495)
Q Consensus 390 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-~~h~ 468 (495)
....++....+.+|....+ .....++|-+.++.++|+|| +.+|++++.|..|+|-.......+.+| -||+
T Consensus 124 v~dkagD~~~~di~s~~~~--------~~~~~lGhvSml~dVavS~D-~~~IitaDRDEkIRvs~ypa~f~IesfclGH~ 194 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSG--------RCEPILGHVSMLLDVAVSPD-DQFIITADRDEKIRVSRYPATFVIESFCLGHK 194 (390)
T ss_pred EEeecCCceeeeeeccccc--------CcchhhhhhhhhheeeecCC-CCEEEEecCCceEEEEecCcccchhhhccccH
Confidence 3334555566666666544 45566789999999999999 899999999999999887655555554 5899
Q ss_pred CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 469 KRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 469 ~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.-|..++.-+ ++.|+|||.|++|++
T Consensus 195 eFVS~isl~~--~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 195 EFVSTISLTD--NYLLLSGSGDKTLRL 219 (390)
T ss_pred hheeeeeecc--CceeeecCCCCcEEE
Confidence 9999999875 577999999999985
No 295
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00024 Score=70.07 Aligned_cols=101 Identities=15% Similarity=0.352 Sum_probs=80.2
Q ss_pred CCcEEEEEEccCCCEEE--EEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---CCcE
Q 048199 376 ANIVSSIEFDRDDQLFA--TAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---EGIV 450 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~--s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---dg~v 450 (495)
.++|.++.|+|++.-|+ .|-+--++.|||++.. ++..+ ..++-+++-|+|. |++|+-++. -|.|
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---------~v~df-~egpRN~~~fnp~-g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---------PVFDF-PEGPRNTAFFNPH-GNIILLAGFGNLPGDM 338 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---------EeEeC-CCCCccceEECCC-CCEEEEeecCCCCCce
Confidence 78999999999998655 4567789999999874 44444 3456788999999 888877664 4689
Q ss_pred EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
-|||+.+.+++..+..-. .+-+.|+| ||.+|+|+...
T Consensus 339 EvwDv~n~K~i~~~~a~~--tt~~eW~P-dGe~flTATTa 375 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAAN--TTVFEWSP-DGEYFLTATTA 375 (566)
T ss_pred EEEeccchhhccccccCC--ceEEEEcC-CCcEEEEEecc
Confidence 999999988888887543 44578999 99999998754
No 296
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=9.5e-06 Score=71.14 Aligned_cols=53 Identities=19% Similarity=0.400 Sum_probs=46.5
Q ss_pred Cccccccccchhhhcc----ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcc
Q 048199 51 KDMLCPICMQIIKEAF----LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP 103 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv----~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 103 (495)
....||||.+.+++.+ .-+|||+||+.|.++++..-..||+|.+++..++++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 3568999999999864 3389999999999999999999999999999888654
No 297
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=9.8e-05 Score=72.87 Aligned_cols=110 Identities=12% Similarity=0.194 Sum_probs=78.6
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC-----CeEEEEEcCCCCCEEEEecCCCc
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS-----KLSCLSWNKFSKNRIASSDYEGI 449 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~p~~~~~l~sg~~dg~ 449 (495)
..+.++++..++-..+|++|+.||.|-+||.+..... ...........+.+ .|+++.|+.+ |..++.|..+|.
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv-~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~ 251 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV-GTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGS 251 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhhhh-eeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCc
Confidence 3588999999998889999999999999999875110 00001111111222 4999999988 999999999999
Q ss_pred EEEEeCCCCcceeecc-cccCcEEEEEeecCC-CCeEEE
Q 048199 450 VTVWDVTTQQSVMEYE-EHEKRAWSVDFSRTE-PSMLVS 486 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~-g~~l~s 486 (495)
|.|||+++.+++..-. +..-+|..+.|.+.+ ...++|
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S 290 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS 290 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeecccccCCCceEEe
Confidence 9999999887765432 335688899997732 234444
No 298
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=7.4e-05 Score=70.41 Aligned_cols=124 Identities=13% Similarity=0.094 Sum_probs=89.2
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
..++++..-+.+++||.. ..-+++..+.. -..+|+++...|.++++++|..-+.+..||++.+ ...
T Consensus 217 ~~fat~T~~hqvR~YDt~--~qRRPV~~fd~-----~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-------kl~ 282 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTR--HQRRPVAQFDF-----LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-------KLL 282 (412)
T ss_pred ceEEEEecceeEEEecCc--ccCcceeEecc-----ccCcceeeeecCCCcEEEEecccchhheecccCc-------eee
Confidence 334455555577777764 22345555542 2578999999999999999999999999999987 222
Q ss_pred ee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeec
Q 048199 419 VV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478 (495)
Q Consensus 419 ~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 478 (495)
.. .-+..+.|+++.-||. ..++++++.|..|+|+|+.+...+.... -...+++|-+.+
T Consensus 283 g~~~kg~tGsirsih~hp~-~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 283 GCGLKGITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred ccccCCccCCcceEEEcCC-CceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 22 2245678999999998 8899999999999999999865554332 133456666644
No 299
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.77 E-value=3.8e-05 Score=84.86 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=104.8
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
..-.+.+|+.|+.+++|... ....+...++ ...+.|+.+.|+.+|+.+..+..||.+.+|.+...
T Consensus 2219 ~~~~Yltgs~dgsv~~~~w~---~~~~v~~~rt----~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-------- 2283 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWG---HGQQVVCFRT----AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-------- 2283 (2439)
T ss_pred CCceEEecCCCceEEEEecc---CCCeEEEeec----cCcchhhhhhhcccCCceeeeccCCceeecccCCc--------
Confidence 34557899999999999874 3344555554 22488999999999999999999999999999843
Q ss_pred CCeeec-CCCCCeEEEEEcCCCCCEEEEec---CCCcEEEEeCCC---CcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 417 CPVVEM-PTRSKLSCLSWNKFSKNRIASSD---YEGIVTVWDVTT---QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 417 ~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~---~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
+.... .|....+.+.|- +..+++++ .++.+.+||... ...+. ..|.+.++++++.| ...+|+|||.
T Consensus 2284 -~~~s~qchnk~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllisggr 2356 (2439)
T KOG1064|consen 2284 -PYTSWQCHNKALSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLISGGR 2356 (2439)
T ss_pred -ceeccccCCccccceeee---ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEecCC
Confidence 33333 456667777776 45666654 577899999753 22333 77999999999999 9999999999
Q ss_pred CCcEeC
Q 048199 490 DCKVLY 495 (495)
Q Consensus 490 D~~v~l 495 (495)
+|.|+|
T Consensus 2357 ~G~v~l 2362 (2439)
T KOG1064|consen 2357 KGEVCL 2362 (2439)
T ss_pred cCcEEE
Confidence 999975
No 300
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.76 E-value=0.00025 Score=72.28 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=69.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeC-CC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCCc-
Q 048199 375 SANIVSSIEFDRDDQLFATAGV-SR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGI- 449 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~- 449 (495)
+...+.+..|+|||+.|+..+. ++ .|.+||+.++ .........+......|+|| +..| ++.+.+|.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg--------~~~~lt~~~g~~~~~~wSPD-G~~La~~~~~~g~~ 286 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ--------VREKVTSFPGINGAPRFSPD-GKKLALVLSKDGQP 286 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC--------CeEEecCCCCCcCCeeECCC-CCEEEEEEeCCCCe
Confidence 4567889999999998886654 33 4788888775 11111111223346899999 6654 55666775
Q ss_pred -EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 450 -VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 450 -v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
|.+||+.++.. ..+..+.......+|+| ||..|+..+.
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp-DG~~I~f~s~ 325 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHP-DGKSLIFTSE 325 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEEC
Confidence 77778876653 44555555667889999 8888766554
No 301
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.76 E-value=0.00031 Score=71.52 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=71.2
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEE-EecCCC-
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIA-SSDYEG- 448 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~-sg~~dg- 448 (495)
.+...+....|+|+|+.|+..+.+ ..|.+||+.++ .........+......|+|| +..|+ +.+.+|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g--------~~~~l~~~~g~~~~~~~SpD-G~~la~~~~~~g~ 266 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG--------RREQITNFEGLNGAPAWSPD-GSKLAFVLSKDGN 266 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC--------CEEEccCCCCCcCCeEECCC-CCEEEEEEccCCC
Confidence 456778999999999988776543 35888899876 11111112233456899999 66554 565555
Q ss_pred -cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 449 -IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 449 -~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.|.+||+.++.. ..+..+........|+| ||..|+..+.
T Consensus 267 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~sp-Dg~~i~f~s~ 306 (430)
T PRK00178 267 PEIYVMDLASRQL-SRVTNHPAIDTEPFWGK-DGRTLYFTSD 306 (430)
T ss_pred ceEEEEECCCCCe-EEcccCCCCcCCeEECC-CCCEEEEEEC
Confidence 588889987654 34555555667789999 8887766553
No 302
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=6.3e-06 Score=73.26 Aligned_cols=54 Identities=28% Similarity=0.654 Sum_probs=43.5
Q ss_pred Cccccccccchhhhc----------cccCCCCccchhhHHhhhcC--CCCCCCCCCcCccCCCcch
Q 048199 51 KDMLCPICMQIIKEA----------FLTACGHSFCYMCIITHLRN--KSDCPCCGHYLTNNQLYPN 104 (495)
Q Consensus 51 ~~l~C~IC~~~~~~P----------v~l~CGH~FC~~Ci~~~~~~--~~~CP~Cr~~~~~~~l~~n 104 (495)
++-.|.||+..+..- ..|.|+|+|..-||..|.-- .++||.|++.+....++.|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 455799999988643 36799999999999999653 4699999999987666655
No 303
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.71 E-value=0.00056 Score=68.41 Aligned_cols=108 Identities=14% Similarity=0.251 Sum_probs=76.0
Q ss_pred EEEEEEcc-CCCEEEEE----eCCCc----EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199 379 VSSIEFDR-DDQLFATA----GVSRR----IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI 449 (495)
Q Consensus 379 V~~l~~~p-~~~~l~s~----s~d~~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~ 449 (495)
..++.|+- ++..+.|. +.+|. ..+|++... .+ ....+..+...+.+.+++++|+ ...++.|+.||+
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~--kl--qrvsvtsipL~s~v~~ca~sp~-E~kLvlGC~DgS 282 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN--KL--QRVSVTSIPLPSQVICCARSPS-EDKLVLGCEDGS 282 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC--ce--eEEEEEEEecCCcceEEecCcc-cceEEEEecCCe
Confidence 35677775 44444443 22333 445655443 11 1234566678889999999999 899999999999
Q ss_pred EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
|.+||...+... +..+.-.++.++|+| +|.++++|+.-|.+.
T Consensus 283 iiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ 324 (545)
T PF11768_consen 283 IILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQ 324 (545)
T ss_pred EEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEE
Confidence 999998766332 333445678899999 999999999988764
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=6.5e-05 Score=73.61 Aligned_cols=140 Identities=13% Similarity=0.148 Sum_probs=95.2
Q ss_pred cccCcccchhhHHhhhhhhhcccCce----EEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLR----VIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~----~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
+...+.+++.|++|++|.+..-.... ..++.. .|+.+|.++.|-.+-++++++ |+-|.+||.-.+
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-----aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFig---- 814 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-----AHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIG---- 814 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhh-----hccCcccceeeeeccceeeec--cCcceeeccccc----
Confidence 34668899999999999985332211 223333 799999999999888888766 889999997665
Q ss_pred CCcCCCeeec---CCC---CCeEEEEEcCCCCCEEEEe-cCCCcEEEEeCCCCcceeecc-----cccCcEEEEEeecCC
Q 048199 413 ADVHCPVVEM---PTR---SKLSCLSWNKFSKNRIASS-DYEGIVTVWDVTTQQSVMEYE-----EHEKRAWSVDFSRTE 480 (495)
Q Consensus 413 ~~~~~~~~~~---~~~---~~i~~~~~~p~~~~~l~sg-~~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~~~~~ 480 (495)
.+...+ ... +.|.++. +-+ ..++..| +...+|+++|.+.+.-+..++ +....+.+++..+ .
T Consensus 815 ----r~Laq~~dapk~~a~~~ikcl~-nv~-~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~ 887 (1034)
T KOG4190|consen 815 ----RLLAQMEDAPKEGAGGNIKCLE-NVD-RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-K 887 (1034)
T ss_pred ----chhHhhhcCcccCCCceeEecc-cCc-chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-C
Confidence 111111 111 2233332 212 4444444 788899999999887555443 3456788999998 8
Q ss_pred CCeEEEeeCCCcEe
Q 048199 481 PSMLVSGSDDCKVL 494 (495)
Q Consensus 481 g~~l~s~s~D~~v~ 494 (495)
|++++.|=.+|+|-
T Consensus 888 GN~lAa~LSnGci~ 901 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIA 901 (1034)
T ss_pred cchhhHHhcCCcEE
Confidence 99998887777764
No 305
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.66 E-value=1.8e-05 Score=76.82 Aligned_cols=51 Identities=24% Similarity=0.653 Sum_probs=44.3
Q ss_pred CCccccccccchhhhccccCCCCccchhhHHhhhcC-----CCCCCCCCCcCccCC
Q 048199 50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-----KSDCPCCGHYLTNNQ 100 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~ 100 (495)
..+..|.+|.+.-.|++...|.|+||+.||..|+.. +.+||.|-..++.+.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 456789999999999999999999999999988764 248999999988753
No 306
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.65 E-value=0.00056 Score=69.42 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=66.0
Q ss_pred CcEEEEEEccCCCEEEEE-eCCC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEE
Q 048199 377 NIVSSIEFDRDDQLFATA-GVSR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTV 452 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~-s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~i 452 (495)
+.+.+..|+|||+.|+.. +.++ .|.+||+.++ .......+...+....|+|| +..|+..+ .+|...|
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg--------~~~~lt~~~~~~~~~~wSPD-G~~I~f~s~~~g~~~I 313 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--------QIRQVTDGRSNNTEPTWFPD-SQNLAYTSDQAGRPQV 313 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC--------CEEEccCCCCCcCceEECCC-CCEEEEEeCCCCCceE
Confidence 335568999999977754 4454 4888898775 12222233445778999999 76665444 4455555
Q ss_pred E--eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 453 W--DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 453 w--d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
| |+.++.. ..+..+........|+| ||.+|+..+.+
T Consensus 314 y~~d~~~g~~-~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~ 351 (429)
T PRK03629 314 YKVNINGGAP-QRITWEGSQNQDADVSS-DGKFMVMVSSN 351 (429)
T ss_pred EEEECCCCCe-EEeecCCCCccCEEECC-CCCEEEEEEcc
Confidence 5 6655543 34444444566789999 99988776643
No 307
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.5e-05 Score=73.17 Aligned_cols=52 Identities=27% Similarity=0.663 Sum_probs=44.9
Q ss_pred ccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcc
Q 048199 52 DMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP 103 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 103 (495)
.-.||||+..-.+|..+ ..|.+||+.||-.|..+.+.||+.+.+....++++
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~r 352 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIR 352 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHH
Confidence 34699999999999866 56999999999999999999999999987665543
No 308
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.64 E-value=0.00059 Score=73.31 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=63.0
Q ss_pred cCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.|.+.|..++.++ ++.+|+|||.||+||+||.+.........++........+.+.++.+-+. ++.+|.|+.||.|++
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~-~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN-GDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC-CCeEEEEcCCCeEEE
Confidence 5888888999886 56999999999999999998753221112222222235667888888777 889999999999999
Q ss_pred EeCCC
Q 048199 453 WDVTT 457 (495)
Q Consensus 453 wd~~~ 457 (495)
.++.-
T Consensus 1125 ~~id~ 1129 (1431)
T KOG1240|consen 1125 LRIDH 1129 (1431)
T ss_pred EEccc
Confidence 99864
No 309
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.64 E-value=0.00024 Score=66.00 Aligned_cols=77 Identities=14% Similarity=0.312 Sum_probs=63.7
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
+|.+.|++++|.|...+|.+|..|..|.+||+-... .......+|..+|..+..-+- -..+.+++.||.|-+|
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~------g~~~el~gh~~kV~~l~~~~~-t~~l~S~~edg~i~~w 267 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK------GTAYELQGHNDKVQALSYAQH-TRQLISCGEDGGIVVW 267 (404)
T ss_pred CcccceEEEEEcCCCcEEEeccccCceEEEeccCCc------ceeeeeccchhhhhhhhhhhh-heeeeeccCCCeEEEE
Confidence 899999999999999999999999999999997651 122334467788888877666 6789999999999999
Q ss_pred eCCC
Q 048199 454 DVTT 457 (495)
Q Consensus 454 d~~~ 457 (495)
|++.
T Consensus 268 ~mn~ 271 (404)
T KOG1409|consen 268 NMNV 271 (404)
T ss_pred eccc
Confidence 8754
No 310
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.59 E-value=0.00044 Score=70.19 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=68.2
Q ss_pred cCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC---c
Q 048199 374 HSANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG---I 449 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg---~ 449 (495)
.|.+.+....|+|||+.|+..+ .++...||.++.... ....... .........|+|+ +.+|+..+.++ .
T Consensus 281 ~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-----~~~~lt~-~g~~~~~~~~SpD-G~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 281 QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-----AAQRVTF-TGSYNTSPRISPD-GKLLAYISRVGGAFK 353 (427)
T ss_pred CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-----ceEEEec-CCCCcCceEECCC-CCEEEEEEccCCcEE
Confidence 3445567788999999877655 356777887653200 1111111 1222346789999 77777665544 5
Q ss_pred EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
|.+||+.++.... +..+ .......|+| ||.+|+.++.++
T Consensus 354 I~v~d~~~g~~~~-lt~~-~~~~~p~~sp-dg~~l~~~~~~~ 392 (427)
T PRK02889 354 LYVQDLATGQVTA-LTDT-TRDESPSFAP-NGRYILYATQQG 392 (427)
T ss_pred EEEEECCCCCeEE-ccCC-CCccCceECC-CCCEEEEEEecC
Confidence 9999998776443 3322 2346789999 999887777544
No 311
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.56 E-value=0.00077 Score=68.67 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=68.3
Q ss_pred CCCcEEEEEEccCCCEEE-EEeCCCc--EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCC--
Q 048199 375 SANIVSSIEFDRDDQLFA-TAGVSRR--IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEG-- 448 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~-s~s~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg-- 448 (495)
+.+.+.+..|+|+|+.|+ +.+.++. |.+||+.++ .......+........|+|| +..|+..+ .+|
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--------~~~~Lt~~~~~~~~~~~spD-G~~i~f~s~~~g~~ 314 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG--------TTTRLTDSPAIDTSPSYSPD-GSQIVFESDRSGSP 314 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC--------ceEEccCCCCccCceeEcCC-CCEEEEEECCCCCC
Confidence 455677889999998765 5566666 566677665 11122223344567899999 76666544 344
Q ss_pred cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 449 IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
.|.+||+..+. ...+..+...+....|+| +|.+|+..+.+
T Consensus 315 ~Iy~~d~~g~~-~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~ 354 (435)
T PRK05137 315 QLYVMNADGSN-PRRISFGGGRYSTPVWSP-RGDLIAFTKQG 354 (435)
T ss_pred eEEEEECCCCC-eEEeecCCCcccCeEECC-CCCEEEEEEcC
Confidence 57788876554 344443455567788999 99988876643
No 312
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.53 E-value=0.00017 Score=67.00 Aligned_cols=109 Identities=16% Similarity=0.247 Sum_probs=78.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-C-----CCCeEEEEEcCCCCCEEEEecCC
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-T-----RSKLSCLSWNKFSKNRIASSDYE 447 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~-----~~~i~~~~~~p~~~~~l~sg~~d 447 (495)
.|+-.|.+|+++.|++.++++. |-.|.+|++...-. ..-+..+. + ..-|++..|||..-+.|+-++..
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~-----sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSK 235 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ-----SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSK 235 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCC-----ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCC
Confidence 4889999999999999998885 88999999976411 11122221 1 12478899999977888888889
Q ss_pred CcEEEEeCCCCcc----eee------------cccccCcEEEEEeecCCCCeEEEeeC
Q 048199 448 GIVTVWDVTTQQS----VME------------YEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 448 g~v~iwd~~~~~~----~~~------------~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
|+|++.|++.... ... |.+--..|..+.|++ +|.+++|-+.
T Consensus 236 GtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy 292 (433)
T KOG1354|consen 236 GTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY 292 (433)
T ss_pred CcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc
Confidence 9999999984211 111 122234688899999 9999988653
No 313
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.51 E-value=1.9e-05 Score=57.31 Aligned_cols=47 Identities=21% Similarity=0.659 Sum_probs=24.1
Q ss_pred ccccccccchhh-h---cc-c---cCCCCccchhhHHhhhcCC-----------CCCCCCCCcCcc
Q 048199 52 DMLCPICMQIIK-E---AF-L---TACGHSFCYMCIITHLRNK-----------SDCPCCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~~~~~-~---Pv-~---l~CGH~FC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 98 (495)
++.|+||...+. + |. + ..|++.|...||.+|+... +.||.|+++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 568999998865 2 43 2 2799999999999998631 369999998764
No 314
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.48 E-value=0.0012 Score=67.32 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=64.9
Q ss_pred CCcEEEEEEccCCCEEE-EEeCCC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCc--
Q 048199 376 ANIVSSIEFDRDDQLFA-TAGVSR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGI-- 449 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~-s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~-- 449 (495)
.+...+..|+|+|+.++ +.+.++ .|.+||+.++ .......+.......+|+|| +..|+..+ .+|.
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g--------~~~~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~ 317 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR--------QLTRLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQ 317 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC--------CeEECccCCCCccceEECCC-CCEEEEEECCCCCce
Confidence 34455789999998665 555555 4888898775 11111223334567899999 76665544 4555
Q ss_pred EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
|.++|+.++.. ..+..+......++|+| +|.+|+..+.+
T Consensus 318 iy~~dl~~g~~-~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~ 356 (433)
T PRK04922 318 IYRVAASGGSA-ERLTFQGNYNARASVSP-DGKKIAMVHGS 356 (433)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECC-CCCEEEEEECC
Confidence 55667666543 22322333455789999 99988776543
No 315
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0016 Score=59.31 Aligned_cols=48 Identities=27% Similarity=0.663 Sum_probs=37.8
Q ss_pred cccccc-chhhhcc----ccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCC
Q 048199 54 LCPICM-QIIKEAF----LTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQL 101 (495)
Q Consensus 54 ~C~IC~-~~~~~Pv----~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l 101 (495)
.||+|. +.|.+|- +-+|||..|..|..+.+... ..||.|...+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 499997 4567773 23899999999999988765 599999998866443
No 316
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=6e-05 Score=71.88 Aligned_cols=48 Identities=33% Similarity=0.769 Sum_probs=39.7
Q ss_pred CCccccccccchhhhcc-------c-cCCCCccchhhHHhhhc--C-----CCCCCCCCCcCc
Q 048199 50 DKDMLCPICMQIIKEAF-------L-TACGHSFCYMCIITHLR--N-----KSDCPCCGHYLT 97 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv-------~-l~CGH~FC~~Ci~~~~~--~-----~~~CP~Cr~~~~ 97 (495)
..+-.|.||++...++. + .+|-|.||..||.+|-. . ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45778999999999876 3 46999999999999973 2 368999998764
No 317
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.44 E-value=5e-05 Score=54.16 Aligned_cols=45 Identities=29% Similarity=0.556 Sum_probs=36.8
Q ss_pred ccccccchhhhc---------------c-ccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 54 LCPICMQIIKEA---------------F-LTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 54 ~C~IC~~~~~~P---------------v-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
.|.||...+-++ + .-.|-|.|...||.+|+.....||.||++...
T Consensus 22 ~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 22 VCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred hhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 577887777653 2 22699999999999999999999999998754
No 318
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.41 E-value=0.0027 Score=57.27 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=71.6
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC
Q 048199 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ 458 (495)
Q Consensus 379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~ 458 (495)
+.++.+++++.++++.+....|..|.++..-.- ......-...+.-.+..|+.. ...+|++.+||++.|||++..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey----~~~~~~a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY----IENIYEAPTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccce----eeeeEecccCCCceeeeeccC-cceEEEEecCCcEEEEEeccc
Confidence 789999999999999999999999999875100 001112223344578899988 889999999999999999874
Q ss_pred cce-----eecccccCcEEEEEeec
Q 048199 459 QSV-----MEYEEHEKRAWSVDFSR 478 (495)
Q Consensus 459 ~~~-----~~~~~h~~~v~~v~~~~ 478 (495)
... .+-..|.+.+..+.|++
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecC
Confidence 322 22335889999999997
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.40 E-value=0.00047 Score=71.81 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=95.1
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC---------CCcEEEEEccccccC
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV---------SRRIKVFDFASVVNE 411 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~---------d~~i~vwd~~~~~~~ 411 (495)
+..|..-++|.+-|.. .++.+.++. .|++.|.++.. .|++|+|+|. |.-|+|||++..
T Consensus 190 lf~G~t~G~V~LrD~~---s~~~iht~~-----aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm--- 256 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLRDPN---SFETIHTFD-----AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM--- 256 (1118)
T ss_pred EEeecccceEEeecCC---cCceeeeee-----ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh---
Confidence 4445555577777663 345566666 79999998766 7999999987 455899999986
Q ss_pred CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Ccc---eeecccccCcEEEEEeecCCCCeEEEe
Q 048199 412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQS---VMEYEEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~---~~~~~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
..+.-++......-+.|+|.-...++..+..|.+.+-|..+ +.+ +..+......+.++++++ +|..|+-|
T Consensus 257 -----ral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafg 330 (1118)
T KOG1275|consen 257 -----RALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFG 330 (1118)
T ss_pred -----hccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEe
Confidence 11111222223356788888667888888999999999432 222 233333355699999999 99999999
Q ss_pred eCCCcEeC
Q 048199 488 SDDCKVLY 495 (495)
Q Consensus 488 s~D~~v~l 495 (495)
..+|.|.+
T Consensus 331 d~~g~v~~ 338 (1118)
T KOG1275|consen 331 DHEGHVNL 338 (1118)
T ss_pred cccCcEee
Confidence 99998864
No 320
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.39 E-value=0.002 Score=65.32 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=68.1
Q ss_pred CCCcEEEEEEccCCCEEE-EEeCCC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEe-cCCC--
Q 048199 375 SANIVSSIEFDRDDQLFA-TAGVSR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS-DYEG-- 448 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~-s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg-~~dg-- 448 (495)
+.+.+.++.|+|+|+.|+ +.+.++ .|.+||+.++ .......+........|+|+ +..|+.. ..++
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~--------~~~~l~~~~~~~~~~~~s~d-g~~l~~~s~~~g~~ 302 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK--------QLTRLTNGPGIDTEPSWSPD-GKSIAFTSDRGGSP 302 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC--------CEEECCCCCCCCCCEEECCC-CCEEEEEECCCCCc
Confidence 345567789999998665 444444 5888888765 11111122333456789999 6666544 3344
Q ss_pred cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 449 IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
.|.+||+.++.. ..+..+...+..+.|+| +|.+|+.++.++
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~ 343 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSP-DGDLIAFVHREG 343 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECC-CCCEEEEEEccC
Confidence 477778776543 34444556677889999 999888877664
No 321
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.39 E-value=0.00023 Score=65.72 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=75.9
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcce
Q 048199 382 IEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV 461 (495)
Q Consensus 382 l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~ 461 (495)
.+|+|+|+++|+++.- .+-|-|..+- ..+..+..-.+|.-+.|..|.-.+|-....|+.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tl--------q~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETL--------QLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchh--------hHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 4699999999999854 7777787764 222333345677889999884444555566779999999888777
Q ss_pred eecccccCcEEEEEeecCCCCeEEE-eeCCCcEe
Q 048199 462 MEYEEHEKRAWSVDFSRTEPSMLVS-GSDDCKVL 494 (495)
Q Consensus 462 ~~~~~h~~~v~~v~~~~~~g~~l~s-~s~D~~v~ 494 (495)
..+..-...+.+++|+| +|++|.. ...|-+|.
T Consensus 85 ckIdeg~agls~~~WSP-dgrhiL~tseF~lriT 117 (447)
T KOG4497|consen 85 CKIDEGQAGLSSISWSP-DGRHILLTSEFDLRIT 117 (447)
T ss_pred EEeccCCCcceeeeECC-CcceEeeeecceeEEE
Confidence 88887788999999999 9866554 44565554
No 322
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.00027 Score=65.75 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=69.9
Q ss_pred cCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCC--eEEEEEcCCCCCEEEEecCCCcE
Q 048199 374 HSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSK--LSCLSWNKFSKNRIASSDYEGIV 450 (495)
Q Consensus 374 ~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~p~~~~~l~sg~~dg~v 450 (495)
-|.+.|+++..-. ++++|.+.+++|+|++||++.-+.. .......+|-.. ..-+..++. ...+++++.|...
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~----~~V~qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcyt 370 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK----KSVMQYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYT 370 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc----cceeeeecccccccccccccccc-cceEEEccCeeEE
Confidence 4788999988776 7889999999999999999875211 011122233221 222334555 5678889999999
Q ss_pred EEEeCCCCcceeeccc----ccCcEEEEEeec
Q 048199 451 TVWDVTTQQSVMEYEE----HEKRAWSVDFSR 478 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~----h~~~v~~v~~~~ 478 (495)
+||.++.|..+.++.- -+..+++++|..
T Consensus 371 RiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EEEecccCceeeccCCCCccccccccceehhc
Confidence 9999999998877753 234677888764
No 323
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=7.6e-05 Score=69.04 Aligned_cols=48 Identities=38% Similarity=0.767 Sum_probs=44.0
Q ss_pred CCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
.|+-.||||.--..+.|..||||--|+.||.+++.+.+.|=.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 356679999999999999999999999999999999999999988765
No 324
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.34 E-value=8.8e-05 Score=49.47 Aligned_cols=40 Identities=18% Similarity=0.575 Sum_probs=32.5
Q ss_pred ccccccc--hhhhccccCCC-----CccchhhHHhhhcCC--CCCCCCC
Q 048199 54 LCPICMQ--IIKEAFLTACG-----HSFCYMCIITHLRNK--SDCPCCG 93 (495)
Q Consensus 54 ~C~IC~~--~~~~Pv~l~CG-----H~FC~~Ci~~~~~~~--~~CP~Cr 93 (495)
.|.||++ ...+|.+.||. |.|...|+.+|+... .+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 44567788984 889999999999765 4899995
No 325
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.34 E-value=0.0021 Score=72.12 Aligned_cols=116 Identities=12% Similarity=0.120 Sum_probs=78.4
Q ss_pred cEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCC-CCcC----CCeeecC---------CCCCeEEEEEcCCCCCEEE
Q 048199 378 IVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEP-ADVH----CPVVEMP---------TRSKLSCLSWNKFSKNRIA 442 (495)
Q Consensus 378 ~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~-~~~~----~~~~~~~---------~~~~i~~~~~~p~~~~~l~ 442 (495)
....|+|+|++. ++++.+.++.|++||+.++.... .... .....++ ......+++|+++ +.+++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d-G~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD-GQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC-CcEEE
Confidence 456799999987 56677778999999998651100 0000 0000111 1113468999999 88999
Q ss_pred EecCCCcEEEEeCCCCcceeec-------------ccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 443 SSDYEGIVTVWDVTTQQSVMEY-------------EEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 443 sg~~dg~v~iwd~~~~~~~~~~-------------~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+-..++.|++||..++...... .++-.....|++++ +|.++++.+.+++|++
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRY 884 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEE
Confidence 9999999999999876543221 11223577899999 9999999989998874
No 326
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0013 Score=65.51 Aligned_cols=93 Identities=10% Similarity=0.036 Sum_probs=80.6
Q ss_pred EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccC
Q 048199 390 LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEK 469 (495)
Q Consensus 390 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~ 469 (495)
.++-|-..|.|-+|++..+ ........-.|.+.|+++.|+.+ -..|+|++.|+.|-.|+...+..++.+.+...
T Consensus 72 ~lvlgt~~g~v~~ys~~~g-----~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~ 145 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGG-----EITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKP 145 (541)
T ss_pred EEEeecCCccEEEEEecCC-----eEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCC
Confidence 6777888999999999887 22333344568899999999988 77999999999999999999999999999999
Q ss_pred cEEEEEeecCCCCeEEEeeC
Q 048199 470 RAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 470 ~v~~v~~~~~~g~~l~s~s~ 489 (495)
.+.+++.+| ||.+|++||.
T Consensus 146 ~~~sl~is~-D~~~l~~as~ 164 (541)
T KOG4547|consen 146 LVSSLCISP-DGKILLTASR 164 (541)
T ss_pred ccceEEEcC-CCCEEEeccc
Confidence 999999999 8999998875
No 327
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.30 E-value=5.8e-05 Score=76.80 Aligned_cols=47 Identities=21% Similarity=0.510 Sum_probs=40.4
Q ss_pred ccccccccchhhhccc---cCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 52 DMLCPICMQIIKEAFL---TACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~---l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
.-.||+|+..|.|-.. .+|+|.||..||.-|-....+||+||..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 3469999999998643 3799999999999999999999999988753
No 328
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.29 E-value=0.0024 Score=63.18 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=67.9
Q ss_pred CCEE-EEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCe-EEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc
Q 048199 388 DQLF-ATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKL-SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE 465 (495)
Q Consensus 388 ~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~ 465 (495)
++++ ++-..+++|.|.|..+. ..+..+.....+ ..+.|+|| +.+++..+.||.|.++|+.+++.+.++.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~--------~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~ 75 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATN--------KVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIK 75 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCC--------eEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEe
Confidence 3444 46667899999999886 444455433344 45789999 8899999999999999999999999887
Q ss_pred cccCcEEEEEeecCCCCeEEEeeC-CCcEe
Q 048199 466 EHEKRAWSVDFSRTEPSMLVSGSD-DCKVL 494 (495)
Q Consensus 466 ~h~~~v~~v~~~~~~g~~l~s~s~-D~~v~ 494 (495)
.- ....++++++ ||.+++++.. ++.|.
T Consensus 76 ~G-~~~~~i~~s~-DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 76 VG-GNPRGIAVSP-DGKYVYVANYEPGTVS 103 (369)
T ss_dssp -S-SEEEEEEE---TTTEEEEEEEETTEEE
T ss_pred cC-CCcceEEEcC-CCCEEEEEecCCCcee
Confidence 53 4567899999 9999988874 55443
No 329
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.27 E-value=0.00015 Score=67.85 Aligned_cols=53 Identities=23% Similarity=0.607 Sum_probs=43.3
Q ss_pred CCccccccccchhhh--c-c-ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcc
Q 048199 50 DKDMLCPICMQIIKE--A-F-LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP 103 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~--P-v-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 103 (495)
...+.|||++..|.. + | +-+|||+|+..+|...- ....||+|.+++...|+++
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 456899999999954 2 3 34999999999999984 3567999999999888765
No 330
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.26 E-value=0.0035 Score=56.61 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=71.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCC-CEEEEecCCCcEEEEe
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK-NRIASSDYEGIVTVWD 454 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~~l~sg~~dg~v~iwd 454 (495)
++.=.+.+|+.....||++..||++.|||++........ .....-.|.+.+..+.|++.+. .+|+-.-.-+.+++.|
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~--~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE--ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh--hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 344567889999999999999999999999986111100 0001124778899999997622 2333333457899999
Q ss_pred CCCCcceeecc-------ccc-CcEEEEEeecCCCCeEEEee
Q 048199 455 VTTQQSVMEYE-------EHE-KRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 455 ~~~~~~~~~~~-------~h~-~~v~~v~~~~~~g~~l~s~s 488 (495)
++++...+.+. .|. ..|..-.|+. ++.-+.+.+
T Consensus 281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~-~n~s~~v~~ 321 (344)
T KOG4532|consen 281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN-ENESNDVKN 321 (344)
T ss_pred cccCceeeEEecCccccccccccccccccccC-CCccccccc
Confidence 99986554432 232 3477777877 554444443
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.24 E-value=0.00045 Score=71.31 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=79.6
Q ss_pred EEEEccCCCEEEEEeC----CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 381 SIEFDRDDQLFATAGV----SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 381 ~l~~~p~~~~l~s~s~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
-++|||...+|+.++. .|+|.||-- ++ .|.......-.+.+++|||. ...|+.|-.-|.+.+|...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfad-tG--------EPqr~Vt~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-TG--------EPQRDVTYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEec-CC--------CCCcccccceehhhhccChH-HHHHhhccccceeEEEecC
Confidence 3569999999888764 577888743 33 12222223334678999999 8899999999999999988
Q ss_pred CCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 457 TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 457 ~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+.+.-..-..|..+|..+.|++ +|..|+|+..-|.|.
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVH 126 (1416)
T ss_pred CceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeE
Confidence 7666666677999999999999 999999998777664
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0025 Score=65.88 Aligned_cols=96 Identities=8% Similarity=0.111 Sum_probs=70.3
Q ss_pred ccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC----CCCEEEEecCCCcEEEEeCCC-Cc
Q 048199 385 DRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF----SKNRIASSDYEGIVTVWDVTT-QQ 459 (495)
Q Consensus 385 ~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~----~~~~l~sg~~dg~v~iwd~~~-~~ 459 (495)
+-+|.+++|||.||+|.|..+.+. ..........++.+++++|+ ....+++|+.-| +.++.-+= |.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~--------~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn 150 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTD--------DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN 150 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCC--------ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC
Confidence 447999999999999999999886 23344445667899999998 356789999888 66665321 11
Q ss_pred ce-eecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 460 SV-MEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 460 ~~-~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.. ..+..-.++|.++.| .|+++|=++++|.
T Consensus 151 k~~v~l~~~eG~I~~i~W---~g~lIAWand~Gv 181 (846)
T KOG2066|consen 151 KDSVVLSEGEGPIHSIKW---RGNLIAWANDDGV 181 (846)
T ss_pred ccceeeecCccceEEEEe---cCcEEEEecCCCc
Confidence 11 134445789999999 5689999988883
No 333
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.21 E-value=0.00021 Score=47.64 Aligned_cols=49 Identities=22% Similarity=0.596 Sum_probs=38.8
Q ss_pred CCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCC
Q 048199 50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQ 100 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 100 (495)
.....|-.|...-+..+.++|||..|..|.... .-.-||.|..++...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence 345678888888888999999999999997642 2356999999987543
No 334
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.18 E-value=0.0098 Score=54.46 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=27.2
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFAS 407 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~ 407 (495)
..=+-++|+||+.+||.+...|+|++||+-.
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 3456789999999999999999999999863
No 335
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.16 E-value=0.00036 Score=77.56 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=89.0
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe---CCCcEEEEEccccccCCCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG---VSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s---~d~~i~vwd~~~~~~~~~~ 414 (495)
+..+.-+..|+.+.+|.... .+...-+ -|.....++.|-. ..+++++ .++.+.+||..-. .
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~p----k~~~s~q-----chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~-----~ 2326 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASP----KPYTSWQ-----CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP-----P 2326 (2439)
T ss_pred CCceeeeccCCceeecccCC----cceeccc-----cCCccccceeeee--hhhhccccCCCCCcccchhcccC-----c
Confidence 33444444566677777641 1122222 4777788888854 6777765 4788999998654 1
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
....+. ..|.+.++++++-|. ..+|+||+.+|.|++||++..+.+..|.. +. ...++++|+..|.++
T Consensus 2327 ~~s~v~-~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2327 MNSLVH-TCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIK 2393 (2439)
T ss_pred ccceee-eecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceE
Confidence 122233 678899999999999 89999999999999999998777666653 22 235777888877776
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
|
T Consensus 2394 I 2394 (2439)
T KOG1064|consen 2394 I 2394 (2439)
T ss_pred E
Confidence 4
No 336
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.16 E-value=0.0045 Score=62.70 Aligned_cols=105 Identities=14% Similarity=0.189 Sum_probs=64.6
Q ss_pred CcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEe-cCC--CcEEE
Q 048199 377 NIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS-DYE--GIVTV 452 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg-~~d--g~v~i 452 (495)
+......|+|||+.|+..+ .++...+|.+..... + ..+.........+....|+|| +..|+.. ..+ ..|.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~---g-~~~~~lt~~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v 355 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE---G-QSPRLLTKKYRNSSCPAWSPD-GKKIAFCSVIKGVRQICV 355 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECccc---c-cceEEeccCCCCccceeECCC-CCEEEEEEcCCCCcEEEE
Confidence 3446789999999777655 567667775532100 0 011111223345678899999 6666544 333 36899
Q ss_pred EeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
||+.++.... +......+....|+| ||.+|+..+
T Consensus 356 ~dl~~g~~~~-Lt~~~~~~~~p~wSp-DG~~L~f~~ 389 (428)
T PRK01029 356 YDLATGRDYQ-LTTSPENKESPSWAI-DSLHLVYSA 389 (428)
T ss_pred EECCCCCeEE-ccCCCCCccceEECC-CCCEEEEEE
Confidence 9998776543 332334567789999 888776443
No 337
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.16 E-value=0.00033 Score=71.24 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=77.2
Q ss_pred CCCCcccccccccc--ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcE
Q 048199 324 QPHTKQESDKNIIH--REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRI 400 (495)
Q Consensus 324 ~~~~~~~~~~~~~~--~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i 400 (495)
.+|...+.+..+.. ...+++.+.|+.+-.|++..-. .++..... .| ..-..++|+- +++.+ ..+..+.|
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~----w~-s~asqVkwnyk~p~vl-asshg~~i 182 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSS----WR-SAASQVKWNYKDPNVL-ASSHGNDI 182 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeec----cc-ccCceeeecccCcchh-hhccCCce
Confidence 34444444444432 3456778889999999986333 23333221 22 3345678886 45555 45567889
Q ss_pred EEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 401 KVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 401 ~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
++||++.+ ..+.... +|-..++.++|+......+.+.+.||+|++||..
T Consensus 183 ~vwd~r~g-------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 183 FVWDLRKG-------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred EEEeccCC-------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 99999987 3444444 4667788888887656678899999999999753
No 338
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00016 Score=67.96 Aligned_cols=48 Identities=21% Similarity=0.588 Sum_probs=41.3
Q ss_pred CccccccccchhhhccccCCCCcc-chhhHHhhhcCCCCCCCCCCcCcc
Q 048199 51 KDMLCPICMQIIKEAFLTACGHSF-CYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l~CGH~F-C~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
..-.|-||+...+|-++|||-|.- |..|.+...-....||+||+++..
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 356799999999999999999985 999998776556789999998753
No 339
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.0039 Score=63.50 Aligned_cols=118 Identities=14% Similarity=0.273 Sum_probs=88.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC--CcCCC------eeecCCCCCeEEEEEcCCCCCEEEEecC
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA--DVHCP------VVEMPTRSKLSCLSWNKFSKNRIASSDY 446 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~~~------~~~~~~~~~i~~~~~~p~~~~~l~sg~~ 446 (495)
......+++|+....+++.||.||.++|.-+.+...... +...+ ...-+|...|.-+.|+.. ...|-|++.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCC
Confidence 345678999999999999999999999998876522221 10011 122378889999999988 889999999
Q ss_pred CCcEEEEeCCCCcceeecc--cccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 447 EGIVTVWDVTTQQSVMEYE--EHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+|.|.||-+..|.=...+. ...+.|.+++|+- +|..++-.=.||.|-
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVI 140 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEE
Confidence 9999999998775433332 2356788999998 888877766676653
No 340
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.14 E-value=0.0016 Score=39.84 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=29.0
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFD 404 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd 404 (495)
.|...|.++.|++.+.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 6788999999999999999999999999996
No 341
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=9.6e-05 Score=52.25 Aligned_cols=45 Identities=27% Similarity=0.605 Sum_probs=35.7
Q ss_pred ccccccchhhh------------cccc-CCCCccchhhHHhhhcCC---CCCCCCCCcCcc
Q 048199 54 LCPICMQIIKE------------AFLT-ACGHSFCYMCIITHLRNK---SDCPCCGHYLTN 98 (495)
Q Consensus 54 ~C~IC~~~~~~------------Pv~l-~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~ 98 (495)
+|.||.-.|.- |.++ .|-|.|...||.+|+... ..||.||+....
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 78888887752 3333 699999999999999764 589999998653
No 342
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.03 E-value=0.006 Score=61.83 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=62.5
Q ss_pred CcEEEEEEccCCCEEEEEeC-----CCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEE-EecCCCc
Q 048199 377 NIVSSIEFDRDDQLFATAGV-----SRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIA-SSDYEGI 449 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~-sg~~dg~ 449 (495)
+......|+|||+.|+..+. |..+.+|++..+. ...+..... ..+......|+|| |..|+ +...+|.
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~-----~g~~~~lt~~~~~~~~~p~wSPD-G~~Laf~s~~~g~ 304 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA-----IGKPRRLLNEAFGTQGNPSFSPD-GTRLVFVSNKDGR 304 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC-----CCcceEeecCCCCCcCCeEECCC-CCEEEEEECCCCC
Confidence 34556789999998776542 3344556766430 001111111 1233457799999 66554 4555776
Q ss_pred EEEEeC--CC-CcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 450 VTVWDV--TT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 450 v~iwd~--~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
..||.+ .. +.....+..+...+....|+| ||..|+..+.
T Consensus 305 ~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~ 346 (428)
T PRK01029 305 PRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSV 346 (428)
T ss_pred ceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEc
Confidence 666644 32 233444554555677889999 9998877654
No 343
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00021 Score=67.21 Aligned_cols=46 Identities=30% Similarity=0.816 Sum_probs=36.0
Q ss_pred CCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
......|.||++.+.+.+.+||||+-| |..-.. .-++||+||+...
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHH
Confidence 344567999999999999999999988 765432 2345999998764
No 344
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.01 E-value=0.0076 Score=61.35 Aligned_cols=102 Identities=16% Similarity=0.050 Sum_probs=62.1
Q ss_pred CcEEEEEEccCCCEEE-EEeCCC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCC--cE
Q 048199 377 NIVSSIEFDRDDQLFA-TAGVSR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEG--IV 450 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~-s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg--~v 450 (495)
+.+....|+|+|+.|+ +.+.++ .|.+||+.++ .......+........|+|| +..| +++..+| .|
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~--------~~~~lt~~~~~~~~~~~spD-g~~i~f~s~~~g~~~i 313 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR--------QLSRVTNHPAIDTEPFWGKD-GRTLYFTSDRGGKPQI 313 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC--------CeEEcccCCCCcCCeEECCC-CCEEEEEECCCCCceE
Confidence 4455789999999776 455555 5777788775 11111223334566789999 5554 4544444 47
Q ss_pred EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.+||+.++.... +...........|+| +|.+|+..+.
T Consensus 314 y~~d~~~g~~~~-lt~~~~~~~~~~~Sp-dg~~i~~~~~ 350 (430)
T PRK00178 314 YKVNVNGGRAER-VTFVGNYNARPRLSA-DGKTLVMVHR 350 (430)
T ss_pred EEEECCCCCEEE-eecCCCCccceEECC-CCCEEEEEEc
Confidence 777877665332 221122334578999 8888877664
No 345
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.98 E-value=0.00023 Score=67.07 Aligned_cols=45 Identities=29% Similarity=0.769 Sum_probs=39.6
Q ss_pred ccccccchhhhccccCCCCccchhhHHhhhcCC--CCCCCCCCcCcc
Q 048199 54 LCPICMQIIKEAFLTACGHSFCYMCIITHLRNK--SDCPCCGHYLTN 98 (495)
Q Consensus 54 ~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~ 98 (495)
.|-||-+-=+|-.+=||||..|-.|+..|.... ..||.||..+.-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 599999999999999999999999999997543 689999987754
No 346
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00031 Score=68.08 Aligned_cols=48 Identities=31% Similarity=0.651 Sum_probs=37.3
Q ss_pred CCccccccccchhh-----hc------------cccCCCCccchhhHHhhhcCC-CCCCCCCCcCc
Q 048199 50 DKDMLCPICMQIIK-----EA------------FLTACGHSFCYMCIITHLRNK-SDCPCCGHYLT 97 (495)
Q Consensus 50 ~~~l~C~IC~~~~~-----~P------------v~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~ 97 (495)
+....|+||+.... .| ..+||-|.|...|+++|...- -.||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 34456999998763 11 245999999999999999854 48999999864
No 347
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.94 E-value=0.0086 Score=61.15 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=60.7
Q ss_pred EEEEEEccCCCEEE-EEeCCCc--EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCCc--EEE
Q 048199 379 VSSIEFDRDDQLFA-TAGVSRR--IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGI--VTV 452 (495)
Q Consensus 379 V~~l~~~p~~~~l~-s~s~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~--v~i 452 (495)
.....|+|+|+.|+ +.+.++. |.+||+.++ .......+........|+|| +..| +++..+|. |.+
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg--------~~~~lt~~~~~~~~p~wSpD-G~~I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK--------ALTRITRHRAIDTEPSWHPD-GKSLIFTSERGGKPQIYR 334 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC--------CeEECccCCCCccceEECCC-CCEEEEEECCCCCceEEE
Confidence 45689999999776 4566676 666677664 11111223334567899999 5555 45544554 556
Q ss_pred EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
+|+.++.... +..+.......+|+| ||.+|+..+.
T Consensus 335 ~dl~~g~~~~-Lt~~g~~~~~~~~Sp-DG~~l~~~~~ 369 (448)
T PRK04792 335 VNLASGKVSR-LTFEGEQNLGGSITP-DGRSMIMVNR 369 (448)
T ss_pred EECCCCCEEE-EecCCCCCcCeeECC-CCCEEEEEEe
Confidence 6777665432 221222334578999 8888877654
No 348
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0037 Score=59.56 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=62.1
Q ss_pred CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 423 PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 423 ~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+...|..++|+|.+..++..++.+.+|+|.|+++...+.++..| ..+|+.+|.-.+..+|+.|-.+|.|.|
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 455679999999996558999999999999999999999999988 789999999856677888888888864
No 349
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.92 E-value=0.00069 Score=44.22 Aligned_cols=42 Identities=29% Similarity=0.759 Sum_probs=22.5
Q ss_pred cccccchhhhc--c--ccCCCCccchhhHHhhhc-CCCCCCCCCCcC
Q 048199 55 CPICMQIIKEA--F--LTACGHSFCYMCIITHLR-NKSDCPCCGHYL 96 (495)
Q Consensus 55 C~IC~~~~~~P--v--~l~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~ 96 (495)
||+|.+.+..- . -.+||+-+|+.|..+... ..+.||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888888321 2 236999999999999886 468999999875
No 350
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0049 Score=62.16 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=71.4
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeE-EEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLS-CLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~-~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
-.|.-+.|+|.-.++|++..+|.|-++.+... .+-.+. +...++ +++|.|| |..|+.|-.||+|++-|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q---------Rlwtip~p~~~v~~sL~W~~D-GkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ---------RLWTIPIPGENVTASLCWRPD-GKLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccc---------eeEeccCCCCccceeeeecCC-CCEEEEEecCCeEEEEE
Confidence 45788999999999999999999888887742 222233 444455 9999999 99999999999999999
Q ss_pred CCCCcceeecc-cccCcEEEEEeec
Q 048199 455 VTTQQSVMEYE-EHEKRAWSVDFSR 478 (495)
Q Consensus 455 ~~~~~~~~~~~-~h~~~v~~v~~~~ 478 (495)
+.++..+..+. .-...|.++.|.+
T Consensus 91 ve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 91 VEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ccCCCceeccccccccchheeeccc
Confidence 99998877732 1245677777754
No 351
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00042 Score=69.30 Aligned_cols=64 Identities=22% Similarity=0.455 Sum_probs=47.5
Q ss_pred CCCCccccccccchhh----hccccCCCCccchhhHHhhhcCCCCCCCCCCcC-----ccCCCcchHHHHHHHHHH
Q 048199 48 ELDKDMLCPICMQIIK----EAFLTACGHSFCYMCIITHLRNKSDCPCCGHYL-----TNNQLYPNFLLDKLLKKT 114 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~----~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~-----~~~~l~~n~~l~~~v~~~ 114 (495)
.+.+.|.|+||+..|- .||.+.|||+.|+.|++.... .+|| |...- .+++++.|+.+-..+...
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp-~~~De~~~~~~~~e~p~n~alL~~~~d~ 79 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP-TKRDEDSSLMQLKEEPRNYALLRREHDA 79 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC-CCccccchhcChhhcchhHHHHHhhcch
Confidence 4566789999988885 599999999999999998654 4677 44321 235677888876665544
No 352
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00015 Score=65.55 Aligned_cols=42 Identities=33% Similarity=0.890 Sum_probs=35.7
Q ss_pred ccccccccchhhhccccCCCCcc-chhhHHhhhcCCCCCCCCCCcCc
Q 048199 52 DMLCPICMQIIKEAFLTACGHSF-CYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l~CGH~F-C~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
.-.|.||++.+.|-+.|+|||.- |..|-.+.- .||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----ECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccc----cCchHHHHHH
Confidence 56799999999999999999975 888877653 6999998753
No 353
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.82 E-value=0.034 Score=54.32 Aligned_cols=109 Identities=6% Similarity=-0.068 Sum_probs=86.8
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCC-cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSR-RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
+|.+.|+=..+.-+++-++.|..|+ .+-|||.+++ ........-+.|.++..+++ |.+++.+.....+.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------e~kr~e~~lg~I~av~vs~d-GK~~vvaNdr~el~v 427 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------EVKRIEKDLGNIEAVKVSPD-GKKVVVANDRFELWV 427 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------eEEEeeCCccceEEEEEcCC-CcEEEEEcCceEEEE
Confidence 5677788888877777888899998 8999999987 22233345577999999999 889999988888999
Q ss_pred EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.|+.+|.....=+...+-|+.++|+| ++.++|-+=-+|.
T Consensus 428 ididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy 466 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGY 466 (668)
T ss_pred EEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcce
Confidence 99999876555555567899999999 9999987654443
No 354
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.76 E-value=0.00026 Score=74.33 Aligned_cols=47 Identities=32% Similarity=0.921 Sum_probs=41.0
Q ss_pred cccccccchhhhccccCCCCccchhhHHhhhcCC--CCCCCCCCcCccCC
Q 048199 53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK--SDCPCCGHYLTNNQ 100 (495)
Q Consensus 53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 100 (495)
..|+||.+ ...+++++|||.||..|+...+... ..||.||..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 8888999999999999999998865 37999998876543
No 355
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=96.76 E-value=0.006 Score=57.03 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=91.7
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
||.+.|++...-|...-+++.+.|.++|||--+.. +...|-.......+++++.+++. ...|+.|-.+|++.=+
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds-----~q~wpsI~~~mP~~~~~~~y~~e-~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS-----GQYWPSIYHYMPSPCSAMEYVSE-SRRLYVGQDNGTVTEF 95 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccc-----cccCchhhhhCCCCceEeeeecc-ceEEEEEEecceEEEE
Confidence 88888999888898888999999999999966554 11233333345678999999998 8899999999999988
Q ss_pred eC----CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 454 DV----TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 454 d~----~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
.+ +....++.+..|..+|..+.|+. ...++++.+.|..+
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~ 138 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQF 138 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccce
Confidence 54 45667788888999999999998 78899999988764
No 356
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.74 E-value=0.0077 Score=61.51 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=81.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
...|.=-+++..+++++-|+.-|.+.+|+-..+.. .....-+..+.+..+..|++ ..++|.|+..|.|.|+-+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~------~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM------RKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQL 105 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhh------hcccccCccceEEEEEecch-hHhhhhhcCCceEEeehh
Confidence 34454555677899999999999999999877611 01111123445667778888 889999999999999988
Q ss_pred CCCcce-----eec-ccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 456 TTQQSV-----MEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 456 ~~~~~~-----~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
..+.+- ..+ ..|...|++++|++ |+..+++|..-|+|.
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~ 149 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVV 149 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEE
Confidence 764321 111 13778999999999 999999999998874
No 357
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.71 E-value=0.017 Score=65.02 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=73.9
Q ss_pred EEEEEcc-CCCEEEEEeCCCcEEEEEccccccC-CCCcCCCe------eecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 380 SSIEFDR-DDQLFATAGVSRRIKVFDFASVVNE-PADVHCPV------VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 380 ~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~------~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
++++|+| ++.++++.+.++.|++||..++... +.+..... .........+.++|+|+++.++++...++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 5789999 6677888888999999998765110 00000000 00011234678999999333667777789999
Q ss_pred EEeCCCCccee-------------ecccc--------cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 452 VWDVTTQQSVM-------------EYEEH--------EKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 452 iwd~~~~~~~~-------------~~~~h--------~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+||+.++.... .+..+ -....+++|++ +|.++++.+.+++|++
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrv 829 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKK 829 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEE
Confidence 99998754211 11101 11246889999 8999999888888863
No 358
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00054 Score=51.64 Aligned_cols=44 Identities=27% Similarity=0.631 Sum_probs=36.3
Q ss_pred cccccccchhhhcc---------------c--cCCCCccchhhHHhhhcCCCCCCCCCCcC
Q 048199 53 MLCPICMQIIKEAF---------------L--TACGHSFCYMCIITHLRNKSDCPCCGHYL 96 (495)
Q Consensus 53 l~C~IC~~~~~~Pv---------------~--l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~ 96 (495)
-.|.||..-+-|+. . -.|-|.|...||.+|++....||.|.++-
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 36999998876541 1 15999999999999999999999998764
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.61 E-value=0.091 Score=41.47 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=67.8
Q ss_pred EEEEEEcc---CC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 379 VSSIEFDR---DD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 379 V~~l~~~p---~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
|++|++.. +| +.|+.||.|..||+|+-... +..+...+.|.++.-... ..|+.|..+|+|-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~----------~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI----------VAEITETDKVTSLCSLGG--GRFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE----------EEEEecccceEEEEEcCC--CEEEEEecCCEEEEEe
Confidence 56676654 33 47899999999999987653 455566677888876654 5799999999999998
Q ss_pred CCCCcceeecccccCcEEEEEeecCCC---CeEEEeeCCCcEe
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEP---SMLVSGSDDCKVL 494 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g---~~l~s~s~D~~v~ 494 (495)
-.. .+-..+. ...+.++++...++ .-|++|=.+|.|-
T Consensus 70 ~~~--RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 70 RSQ--RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred Ccc--eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 532 2222221 22366666553232 2588888888874
No 360
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.54 E-value=0.0044 Score=57.08 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=77.5
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CC-----CCeEEEEEcCCCCCEEEEecCC
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TR-----SKLSCLSWNKFSKNRIASSDYE 447 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~-----~~i~~~~~~p~~~~~l~sg~~d 447 (495)
.|.-.|.+|+|+.|.+.++++. |-.|.+|++... ++..-+..+. |. .-|++..|||..-+.|.-++..
T Consensus 170 aH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~-----D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSAD-DLRINLWNLEII-----DGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred cceeEeeeeeecCchheeeecc-ceeeeecccccc-----CCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 4778899999999988887775 889999998865 1112222221 21 2478899999877788888889
Q ss_pred CcEEEEeCCCCc-c---------------eeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 448 GIVTVWDVTTQQ-S---------------VMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 448 g~v~iwd~~~~~-~---------------~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
|.|++-|++... | +.-|.+-...|..+.|++ +|.++++-+.
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy 300 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY 300 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc
Confidence 999999998421 1 111223345788899999 9999988654
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.54 E-value=0.0047 Score=37.61 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=30.9
Q ss_pred cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 459 QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 459 ~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+...+..|...|+++.|++ ++.++++++.|+.|++
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~ 38 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKL 38 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEE
Confidence 45566778899999999999 8889999999999875
No 362
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.51 E-value=0.035 Score=54.28 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=75.9
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC----c
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG----I 449 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg----~ 449 (495)
..-+.|.++..+|+|++++.+.....+-+.|++++ ...+......+-|..+.|||+ +.+||-+--+| .
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididng-------nv~~idkS~~~lItdf~~~~n-sr~iAYafP~gy~tq~ 470 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG-------NVRLIDKSEYGLITDFDWHPN-SRWIAYAFPEGYYTQS 470 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC-------CeeEecccccceeEEEEEcCC-ceeEEEecCcceeeee
Confidence 35678999999999999999988888999999987 223334455677999999999 88888776665 5
Q ss_pred EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 450 VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
|+++|+..++....-. ....=.+-+|.| ++.+|.--|
T Consensus 471 Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 471 IKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred EEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEe
Confidence 9999998765433322 222224456777 777665433
No 363
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.017 Score=59.91 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=82.2
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC-----CCEEEEEeCCCcEEEEEccccccC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD-----DQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-----~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
.++.++++++|++|.|..+-. ++.....++ .-++.+|+++|+ ...|++||.-| +-++.-...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~-~~~~~~~df--------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl--- 148 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFT-DDEITQYDF--------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL--- 148 (846)
T ss_pred CCceEEEecCCCcEEEeeccC-CccceeEec--------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh---
Confidence 467788999999888866532 222222333 357899999997 55889999888 777765433
Q ss_pred CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCc------EEEEEeec
Q 048199 412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR------AWSVDFSR 478 (495)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~------v~~v~~~~ 478 (495)
+....+......++|.++.|. |++||=++.+ -|+|||+.+++.+..+..-... ...+.|.+
T Consensus 149 --gnk~~v~l~~~eG~I~~i~W~---g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~ 215 (846)
T KOG2066|consen 149 --GNKDSVVLSEGEGPIHSIKWR---GNLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD 215 (846)
T ss_pred --cCccceeeecCccceEEEEec---CcEEEEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecC
Confidence 112333344567889999999 7799888755 5799999988766665432222 24566765
No 364
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.012 Score=58.35 Aligned_cols=100 Identities=9% Similarity=0.187 Sum_probs=71.8
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC----------C-C
Q 048199 380 SSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY----------E-G 448 (495)
Q Consensus 380 ~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~----------d-g 448 (495)
+-+.|+|.|.||+|-..-| |.+|-=.+. .....+.|. .|.-+.|+|. ..||+|=+. + .
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--------~r~~RF~Hp-~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESF--------DRIQRFYHP-GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccH--------HHHHhccCC-CceeeecCCc-cceEEEecCCccccCcccCCCc
Confidence 4578999999999987554 888965443 222333443 5788999999 899998542 2 3
Q ss_pred cEEEEeCCCCcceeeccc--ccCcEEE-EEeecCCCCeEEEeeCCC
Q 048199 449 IVTVWDVTTQQSVMEYEE--HEKRAWS-VDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~--h~~~v~~-v~~~~~~g~~l~s~s~D~ 491 (495)
.+.|||+++|...++|.. ....+|- +.||. |+.++|--..|+
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~~s 327 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTGNS 327 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEeccce
Confidence 689999999999888876 3334443 47898 888888766554
No 365
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.006 Score=58.97 Aligned_cols=141 Identities=14% Similarity=0.029 Sum_probs=91.4
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~ 417 (495)
....+++-|+.++.|.-.+..-...+.- +..|.+.|.+++.+-++.++.|.+. |+.+|+||+.+- .
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKh-----FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~--------D 87 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKH-----FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF--------D 87 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhh-----hHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc--------c
Confidence 3345778888999998754322222222 2268899999999999999999887 999999999875 1
Q ss_pred CeeecCCCCCeEEEEEcCCCC----CEEEEecCCCcEEEEeCCCCc-ce-eecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSK----NRIASSDYEGIVTVWDVTTQQ-SV-MEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~----~~l~sg~~dg~v~iwd~~~~~-~~-~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
....+........+.|.-..| .+-++.-.+|.+.|+|-.... .. ..-.-|..+|..+.+++ -+..++|....|
T Consensus 88 minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~g 166 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISG 166 (558)
T ss_pred hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccc
Confidence 111111112223344433313 233444467889999987543 22 33334899999999999 777787776556
Q ss_pred cE
Q 048199 492 KV 493 (495)
Q Consensus 492 ~v 493 (495)
.|
T Consensus 167 mV 168 (558)
T KOG0882|consen 167 MV 168 (558)
T ss_pred ee
Confidence 55
No 366
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.42 E-value=0.057 Score=54.52 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=64.0
Q ss_pred cEEEEEEccCCCE-EEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC--cEE
Q 048199 378 IVSSIEFDRDDQL-FATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG--IVT 451 (495)
Q Consensus 378 ~V~~l~~~p~~~~-l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg--~v~ 451 (495)
.+..-.|+|+|+. ++..+.+ ..|.++|+.++ .........+......|+||+..++++.+.++ .|.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg--------~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG--------KKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC--------cEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence 6778999999984 5544433 45888888776 11121223444567889999444555555454 577
Q ss_pred EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
++|+.++. ...+..+........|+| ||..|+-.+.
T Consensus 261 ~~dl~~g~-~~~LT~~~~~d~~p~~SP-DG~~I~F~Sd 296 (419)
T PRK04043 261 LYDTNTKT-LTQITNYPGIDVNGNFVE-DDKRIVFVSD 296 (419)
T ss_pred EEECCCCc-EEEcccCCCccCccEECC-CCCEEEEEEC
Confidence 77887665 344444443334567999 9987766664
No 367
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.33 E-value=0.049 Score=53.60 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=71.0
Q ss_pred CCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCcCCCeee----cCCCCCeEEEEEcCCCCCEEEEec-CCCc
Q 048199 376 ANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADVHCPVVE----MPTRSKLSCLSWNKFSKNRIASSD-YEGI 449 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~p~~~~~l~sg~-~dg~ 449 (495)
...-+.+.|+|+++++. ..-.+.+|.+|++......+... ..+.. .........+.++|| +.+|+.+. ...+
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~i~ispd-g~~lyvsnr~~~s 268 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI-QTISTLPEGFTGENAPAEIAISPD-GRFLYVSNRGSNS 268 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE-EEEESCETTSCSSSSEEEEEE-TT-SSEEEEEECTTTE
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE-EEeeeccccccccCCceeEEEecC-CCEEEEEeccCCE
Confidence 45678999999998765 45568889999998321111000 00011 112236889999999 77666554 5668
Q ss_pred EEEEeCC--CCc--ceeecccccCcEEEEEeecCCCCeEEEeeC-CCcE
Q 048199 450 VTVWDVT--TQQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGSD-DCKV 493 (495)
Q Consensus 450 v~iwd~~--~~~--~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~-D~~v 493 (495)
|.+|++. +|. .+..+.......+.++|+| +|.+|+++.. ++.|
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v 316 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTV 316 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEE
T ss_pred EEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeE
Confidence 9999994 232 3333433345578999999 9999888774 4444
No 368
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=0.03 Score=57.96 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=82.2
Q ss_pred cCCCcEEEEEEccC------C------CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCC---C
Q 048199 374 HSANIVSSIEFDRD------D------QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKF---S 437 (495)
Q Consensus 374 ~h~~~V~~l~~~p~------~------~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~---~ 437 (495)
.|...|+.+.|.|- + -+++++...|.|.+||+... ..+..+. +.+++-.++|-+. +
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--------s~~~~l~~~~~~~qdl~W~~~rd~S 124 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--------SVINWLSHSNDSVQDLCWVPARDDS 124 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--------hhhhhhcCCCcchhheeeeeccCcc
Confidence 68999999999872 1 15778888999999999886 3333343 4456777777542 2
Q ss_pred CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 438 KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 438 ~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
..+|+.-..-.+|-+|+..+|+.+-.+..-.....++.+.|.|..++..-+..|.|
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence 35677766678999999999998877765556677788888887777666666655
No 369
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.29 E-value=0.001 Score=62.67 Aligned_cols=43 Identities=28% Similarity=0.690 Sum_probs=36.6
Q ss_pred ccccccccchhhh-c---cccCCCCccchhhHHhhhcCC--CCCCCCCC
Q 048199 52 DMLCPICMQIIKE-A---FLTACGHSFCYMCIITHLRNK--SDCPCCGH 94 (495)
Q Consensus 52 ~l~C~IC~~~~~~-P---v~l~CGH~FC~~Ci~~~~~~~--~~CP~Cr~ 94 (495)
+|.|..|++.+-. | -.|||.|+|..+|+..++.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 6899999999853 2 378999999999999998765 58999994
No 370
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.0024 Score=56.47 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=33.2
Q ss_pred ccCCCCccccccccchhhhccccCCCCccchhhHHhhh
Q 048199 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHL 83 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~ 83 (495)
.+.+.+.--|++|+..+.+||+++=||.||+.||.+++
T Consensus 37 rDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 37 RDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 34555666799999999999999999999999999875
No 371
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=96.14 E-value=0.034 Score=49.12 Aligned_cols=47 Identities=28% Similarity=0.709 Sum_probs=36.2
Q ss_pred cccccccc-chhhhcc--cc--C-CCCccchhhHHhhhcCCC-CCC--CCCCcCcc
Q 048199 52 DMLCPICM-QIIKEAF--LT--A-CGHSFCYMCIITHLRNKS-DCP--CCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~-~~~~~Pv--~l--~-CGH~FC~~Ci~~~~~~~~-~CP--~Cr~~~~~ 98 (495)
+-.||||. +.|-+|- ++ | |-|-.|.+|+.+.+...+ .|| -|++-+..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 45799997 4566773 22 5 999999999999988765 899 78776543
No 372
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0021 Score=61.34 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=34.9
Q ss_pred Cccccccccchhhhc---cccCCCCccchhhHHhhhcCC--------CCCCCCCCc
Q 048199 51 KDMLCPICMQIIKEA---FLTACGHSFCYMCIITHLRNK--------SDCPCCGHY 95 (495)
Q Consensus 51 ~~l~C~IC~~~~~~P---v~l~CGH~FC~~Ci~~~~~~~--------~~CP~Cr~~ 95 (495)
..+.|.||++...-- +.+||+|.||+.|+..|.... .+||.|+-.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 346799999999753 467999999999999987632 379876643
No 373
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.09 E-value=0.004 Score=58.71 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=49.3
Q ss_pred CCCCccccccccchhhhcc-ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 48 ELDKDMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
...+.|.||||++.+.-|. ...=||.-|-.|-.+. ..+||.||.++.. +.++.+..+++....
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~---~~~CP~Cr~~~g~---~R~~amEkV~e~~~v 107 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV---SNKCPTCRLPIGN---IRCRAMEKVAEAVLV 107 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh---cccCCcccccccc---HHHHHHHHHHHhcee
Confidence 3455688999999999995 4566999999998654 3589999999873 467888888776654
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.07 E-value=0.0022 Score=64.65 Aligned_cols=133 Identities=17% Similarity=0.256 Sum_probs=84.0
Q ss_pred hhHHhhhhhhhcc-cCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCC
Q 048199 346 ADFQSVLTTFTRY-SRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT 424 (495)
Q Consensus 346 ~d~~~~lw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 424 (495)
.|+.+.|||+.+. .....-+.+..+ -...+.+++|..+.+++++|...+.++++|++.. ......-.
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~----~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs--------~~~~~svn 194 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSS----TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS--------LDSVSSVN 194 (783)
T ss_pred ccCCccceecccccCCCccccccccc----cccCccccccccCcchhhcccccchhhhhhhhhh--------hhhhhhhh
Confidence 4567889997532 111112222222 2234558888888889999999999999999954 11111112
Q ss_pred CCCeEEEEEcCCCCCEEEEecCCCcEEEEe-CCC-CcceeecccccC----cEEEEEeecCCCCeEEEeeCCC
Q 048199 425 RSKLSCLSWNKFSKNRIASSDYEGIVTVWD-VTT-QQSVMEYEEHEK----RAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 425 ~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd-~~~-~~~~~~~~~h~~----~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
...+..+...|..++++++-. ||.|-+|| .++ ..++.++...+. .+..++|+|.....+++.+.|.
T Consensus 195 Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS 266 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS 266 (783)
T ss_pred hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc
Confidence 223556777785577877766 99999999 333 234444443333 4899999997667788877654
No 375
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.032 Score=59.94 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=73.2
Q ss_pred CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE 466 (495)
Q Consensus 387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~ 466 (495)
.+..++.|+..|.+-.+|+....+.+ .......++|.+++|+.+ |.++..|-.+|.|.+||+..+..++.+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~------~~ne~v~~~Vtsvafn~d-g~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPL------HQNERVQGPVTSVAFNQD-GSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchh------hcCCccCCcceeeEecCC-CceeccccCCCcEEEEEccCCcceeeeee
Confidence 45567888888889999888752211 111234568999999999 99999999999999999999999999888
Q ss_pred ccCcEEEEEe---ecCCCCeEEEeeCCCcE
Q 048199 467 HEKRAWSVDF---SRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 467 h~~~v~~v~~---~~~~g~~l~s~s~D~~v 493 (495)
|..+..++-+ .. ++..++++..-|.+
T Consensus 171 ~~ap~t~vi~v~~t~-~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTS-QNSKLLTSDTGGSF 199 (1206)
T ss_pred cCCccceEEEEEEeC-CCcEEEEccCCCce
Confidence 8776666543 33 44567777666643
No 376
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.99 E-value=0.13 Score=50.23 Aligned_cols=99 Identities=16% Similarity=0.087 Sum_probs=66.7
Q ss_pred HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC----------CCcEEEEEccccccCCCCcCCC
Q 048199 349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV----------SRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~----------d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
++.+.|. ...+.+..+..|. ... .+ ++||++.|+.+.. +..|.+||+.+. ..
T Consensus 28 ~v~ViD~---~~~~v~g~i~~G~----~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--------~~ 89 (352)
T TIGR02658 28 QVYTIDG---EAGRVLGMTDGGF----LPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--------LP 89 (352)
T ss_pred eEEEEEC---CCCEEEEEEEccC----CCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--------cE
Confidence 5556665 3345555666533 122 24 8999997776655 789999999997 33
Q ss_pred eeecCC--------CCCeEEEEEcCCCCCEEEEec-C-CCcEEEEeCCCCcceeeccc
Q 048199 419 VVEMPT--------RSKLSCLSWNKFSKNRIASSD-Y-EGIVTVWDVTTQQSVMEYEE 466 (495)
Q Consensus 419 ~~~~~~--------~~~i~~~~~~p~~~~~l~sg~-~-dg~v~iwd~~~~~~~~~~~~ 466 (495)
+..+.. ......++++|| +.+|+... . +..|.++|+.+++.+..+.-
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCC-CCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 322221 223458899999 77777655 3 68999999999988887753
No 377
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.99 E-value=0.0037 Score=49.93 Aligned_cols=48 Identities=27% Similarity=0.566 Sum_probs=41.5
Q ss_pred CccccccccchhhhccccC----CCCccchhhHHhhhcCC---CCCCCCCCcCcc
Q 048199 51 KDMLCPICMQIIKEAFLTA----CGHSFCYMCIITHLRNK---SDCPCCGHYLTN 98 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l~----CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~ 98 (495)
....|-||.|...|...|+ ||...|..|-...|+.. +.||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 3457999999999999873 99999999999988865 699999998865
No 378
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.95 E-value=0.0028 Score=66.39 Aligned_cols=50 Identities=22% Similarity=0.608 Sum_probs=39.2
Q ss_pred CCCCccccccccchhhh-----cc--ccCCCCccchhhHHhhhcCC--CCCCCCCCcCc
Q 048199 48 ELDKDMLCPICMQIIKE-----AF--LTACGHSFCYMCIITHLRNK--SDCPCCGHYLT 97 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~-----Pv--~l~CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~ 97 (495)
.++..-.|+||..++.. |- .-.|.|-|+-+|+-+|+..+ .+||.||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34445579999999972 32 33699999999999999876 58999997654
No 379
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.91 E-value=0.26 Score=48.48 Aligned_cols=115 Identities=14% Similarity=0.108 Sum_probs=69.3
Q ss_pred CcEEEEEEccCCCEEEEEe-CCCcEEEEEcccc--ccCCCCc-----CCCeeecCCCCCeEEEEEcCCCCCEEEEec-CC
Q 048199 377 NIVSSIEFDRDDQLFATAG-VSRRIKVFDFASV--VNEPADV-----HCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YE 447 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~--~~~~~~~-----~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~d 447 (495)
..-..++++|++++|+++. .+++|.+|++... ....... ..+...........++.|+|+ +.+++..+ ..
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-g~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-GRFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT-SSEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC-CCEEEEEecCC
Confidence 3455799999999888876 4899999999873 0000000 000000122345889999999 66666544 44
Q ss_pred CcEEEEeCCCCc--c--eeecc-cccCcEEEEEeecCCCCeEEEee-CCCcE
Q 048199 448 GIVTVWDVTTQQ--S--VMEYE-EHEKRAWSVDFSRTEPSMLVSGS-DDCKV 493 (495)
Q Consensus 448 g~v~iwd~~~~~--~--~~~~~-~h~~~v~~v~~~~~~g~~l~s~s-~D~~v 493 (495)
..|.+|++.... . ...+. ........+.|+| ++.+++... .++.|
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v 216 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTV 216 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEE
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcE
Confidence 579999997644 2 12222 2344578899999 888776655 35544
No 380
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.84 E-value=0.17 Score=47.02 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=71.6
Q ss_pred CcEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCCeeecCCC-CCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 377 NIVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTR-SKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
.....|+|+|+++.| ++-+..+.|..|++......+.. .......... +..-.+++..+ ++++++....+.|.++|
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN-RRVFIDFPGGPGYPDGLAVDSD-GNLWVADWGGGRIVVFD 211 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE-EEEEEE-SSSSCEEEEEEEBTT-S-EEEEEETTTEEEEEE
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceee-eeeEEEcCCCCcCCCcceEcCC-CCEEEEEcCCCEEEEEC
Confidence 456799999999865 46778888999998754111100 0111122222 34788999998 88888877889999999
Q ss_pred CCCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS 486 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s 486 (495)
.. |+.+..+.--...+++++|...+...|+.
T Consensus 212 p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 212 PD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp TT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred CC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 87 88888777555689999995225454443
No 381
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.74 E-value=0.15 Score=48.44 Aligned_cols=114 Identities=8% Similarity=0.102 Sum_probs=75.9
Q ss_pred CCcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccC---CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcE
Q 048199 376 ANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNE---PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIV 450 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v 450 (495)
...-+-|.|||++++..... .+++|-+|.++..... ++.+...-..+....+...|..++| |.+|+.+... ..|
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d-GrFLYasNRg~dsI 268 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD-GRFLYASNRGHDSI 268 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC-CCEEEEecCCCCeE
Confidence 34567899999999776544 6999999999885222 2222222223445567788999999 8888887632 267
Q ss_pred EEEeCCC--Cc--ceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 451 TVWDVTT--QQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 451 ~iwd~~~--~~--~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
-+|.+.. +. .+.....+....+...|++ +|++|+.+..|+
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~s 312 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKS 312 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCC
Confidence 7777653 22 2222333445578889999 899998888654
No 382
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.74 E-value=0.07 Score=59.14 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=72.4
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc-----------------------ccCCC--Cc--C-------CCe--
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV-----------------------VNEPA--DV--H-------CPV-- 419 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~-----------------------~~~~~--~~--~-------~~~-- 419 (495)
...|.+++|+||+++|+....++++-+.+-+-. +++.+ +. + .+.
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 356999999999999999888988888763311 11100 00 0 000
Q ss_pred ----eecCCCCCeEEEEEcCCCCCEEEEecC---C---CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 420 ----VEMPTRSKLSCLSWNKFSKNRIASSDY---E---GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 420 ----~~~~~~~~i~~~~~~p~~~~~l~sg~~---d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
......+.-..++|-.| |.+||..+. + ..|+||+-. |....+-..-.+--.+++|.| .|.+||+...
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGD-G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~ 276 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGD-GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQR 276 (928)
T ss_pred ccccCccccCCCceEEEECCC-CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEE
Confidence 00112335568999999 999998875 3 479999954 664444433333345689999 9999998764
No 383
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.15 Score=50.95 Aligned_cols=98 Identities=10% Similarity=0.225 Sum_probs=70.5
Q ss_pred EEEEccCCC---EEEEEeCCC---------cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEE--EecC
Q 048199 381 SIEFDRDDQ---LFATAGVSR---------RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIA--SSDY 446 (495)
Q Consensus 381 ~l~~~p~~~---~l~s~s~d~---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~--sg~~ 446 (495)
.+.|++-|. +|++...|+ ++.+.++.. ..........++|.++.|+|+ +.-|+ -|-.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g--------~s~~V~L~k~GPVhdv~W~~s-~~EF~VvyGfM 292 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG--------ESVSVPLLKEGPVHDVTWSPS-GREFAVVYGFM 292 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC--------ceEEEecCCCCCceEEEECCC-CCEEEEEEecc
Confidence 466877665 233444565 366666663 244555667899999999999 64443 3556
Q ss_pred CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
=..+.|||.+ +.++..|. +++-+++-|+| .|++|+-++.+.
T Consensus 293 PAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGN 333 (566)
T KOG2315|consen 293 PAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGN 333 (566)
T ss_pred cceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCC
Confidence 6689999987 77777775 66778899999 999999888754
No 384
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.58 E-value=0.0054 Score=56.76 Aligned_cols=50 Identities=24% Similarity=0.731 Sum_probs=37.8
Q ss_pred Cccccccccchhhh----ccccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCC
Q 048199 51 KDMLCPICMQIIKE----AFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQ 100 (495)
Q Consensus 51 ~~l~C~IC~~~~~~----Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 100 (495)
|+-.||+|.+.+.- =.-.+||.-.|+-|....-+. +++||.||+.+..+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 34449999998752 245689999999998765443 479999999887654
No 385
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=95.46 E-value=0.0054 Score=63.28 Aligned_cols=66 Identities=27% Similarity=0.586 Sum_probs=49.6
Q ss_pred cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC---CCCCCCCCcCccCCCcchHHHHHHHH
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLYPNFLLDKLLK 112 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~~v~ 112 (495)
..+...+.|+||+..+.+|+.+.|-|.||..|+...+... ..||+|+.......++--.....+++
T Consensus 16 ~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 16 NAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSK 84 (684)
T ss_pred HHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHH
Confidence 3445678999999999999999999999999998766544 48999997776554443333334444
No 386
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.42 E-value=0.027 Score=57.73 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=61.1
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
+.||++.|.-+.|+.+.+.|-|+..+|-|.||-+-.+ ..-.........+-|.+++|+.| |..|...-.||.|.
T Consensus 67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg-----sW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG-----SWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVI 140 (1189)
T ss_pred hccCcceEEEEEeccccccccccCCCceEEEEeeecc-----cHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEE
Confidence 4489999999999999999999999999999998776 11111122234556899999999 88888888888887
Q ss_pred EEeCC
Q 048199 452 VWDVT 456 (495)
Q Consensus 452 iwd~~ 456 (495)
|=.+.
T Consensus 141 VGsvd 145 (1189)
T KOG2041|consen 141 VGSVD 145 (1189)
T ss_pred EEeec
Confidence 76654
No 387
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.34 Score=46.06 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=71.0
Q ss_pred EEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEe-cCCCcEEEEeCC
Q 048199 379 VSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS-DYEGIVTVWDVT 456 (495)
Q Consensus 379 V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg-~~dg~v~iwd~~ 456 (495)
+-...|.|++++|++... --.|.+|++..+.-.. .....+.......-+.|||+ +.+.+.- =.+++|-+|..+
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~----~~~~~v~~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP----ADPAEVKPGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCcccc----ccccccCCCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEc
Confidence 778889999999888754 3469999998662111 11122245567889999999 7766554 468999999987
Q ss_pred CC-cceeeccc---------ccCcEEEEEeecCCCCeEEEee
Q 048199 457 TQ-QSVMEYEE---------HEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 457 ~~-~~~~~~~~---------h~~~v~~v~~~~~~g~~l~s~s 488 (495)
.. ..+..++. -..+.-.|..++ ||++|..+.
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasN 262 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASN 262 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEec
Confidence 63 22222221 134667788889 999987764
No 388
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.0076 Score=57.65 Aligned_cols=50 Identities=18% Similarity=0.448 Sum_probs=41.1
Q ss_pred CCCccccccccchhhh---ccccCCCCccchhhHHhhhcCC---CCCCCCCCcCcc
Q 048199 49 LDKDMLCPICMQIIKE---AFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTN 98 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~ 98 (495)
+..-+.|||-.+.-++ |+.|.|||+.|+.-|.+...+. .+||.|-.....
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~ 386 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLA 386 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCH
Confidence 4556789999988875 7899999999999999987764 589999765543
No 389
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.046 Score=55.43 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=59.3
Q ss_pred CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEE-EEEeecCCCCeEEEeeCCCcEeC
Q 048199 424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAW-SVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
-...+..+.|+|. -.+||.+..+|.|.+..+. -+.+.++.-|...++ +++|.| ||+.||.|=.||+|+|
T Consensus 19 l~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 19 LPINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRL 88 (665)
T ss_pred cccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEE
Confidence 3446888999999 8999999999999888877 677777876766666 999999 9999999999999985
No 390
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.26 E-value=0.15 Score=50.44 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=71.9
Q ss_pred CCCcEEEEEEccCCCEEEEE--eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC---Cc
Q 048199 375 SANIVSSIEFDRDDQLFATA--GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE---GI 449 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~--s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d---g~ 449 (495)
-.++|-+.+|.|+++.|++. -++-++.++|++.. +.......+=+.+-|+|. +.+++.++.| |.
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------l~~~~Pe~~rNT~~fsp~-~r~il~agF~nl~gn 341 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------LRFYFPEQKRNTIFFSPH-ERYILFAGFDNLQGN 341 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc----------eEEecCCcccccccccCc-ccEEEEecCCccccc
Confidence 36899999999988877654 47899999999885 233334445567889998 8888886655 46
Q ss_pred EEEEeCCCCcce-eecccccCcEEEEEeecCCCCeEEEee
Q 048199 450 VTVWDVTTQQSV-MEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 450 v~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
|-+||......+ ..+.+-. ..-+.|+| |+.++.+.-
T Consensus 342 i~i~~~~~rf~~~~~~~~~n--~s~~~wsp-d~qF~~~~~ 378 (561)
T COG5354 342 IEIFDPAGRFKVAGAFNGLN--TSYCDWSP-DGQFYDTDT 378 (561)
T ss_pred eEEeccCCceEEEEEeecCC--ceEeeccC-CceEEEecC
Confidence 999998754433 3565543 34467999 988876654
No 391
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.23 E-value=0.041 Score=56.41 Aligned_cols=110 Identities=19% Similarity=0.321 Sum_probs=74.8
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
-.+.+..+.+|++..++|.|+..+.|.+|-+......-.....+ ....|...|++++|+++ +..+++|+.-|+|..--
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~-~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP-CDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTE 152 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc-ccccCCceEEEEEeccc-ccEEeecCCCceEEEEE
Confidence 35667778889999999999999999999988752211111111 11136778999999999 99999999999998887
Q ss_pred CCCC----cceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 455 VTTQ----QSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 455 ~~~~----~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
+.+. ...+.+-.-.+.|-.+++. .+.+|++..
T Consensus 153 L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl 188 (726)
T KOG3621|consen 153 LDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL 188 (726)
T ss_pred echhhhhccccceeeccCcceEEeecc--cceehHhhh
Confidence 7662 1223333345667677665 345555543
No 392
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.02 E-value=0.23 Score=48.41 Aligned_cols=79 Identities=9% Similarity=0.070 Sum_probs=59.0
Q ss_pred cEEEEEEccCCCEEEEEeC----------CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEec-
Q 048199 378 IVSSIEFDRDDQLFATAGV----------SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSD- 445 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s~s~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~- 445 (495)
.+.-++++|+++.++.... ...|.++|..+. ..+..+.-...++.++++|| +. +|++..
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--------kvi~~i~vG~~~~~iavS~D-gkp~lyvtn~ 319 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--------KRLRKIELGHEIDSINVSQD-AKPLLYALST 319 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC--------eEEEEEeCCCceeeEEECCC-CCeEEEEeCC
Confidence 3444999999887776431 246889998886 44444445568999999999 66 777665
Q ss_pred CCCcEEEEeCCCCcceeecc
Q 048199 446 YEGIVTVWDVTTQQSVMEYE 465 (495)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~ 465 (495)
.++.|.+.|..+++.+.++.
T Consensus 320 ~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 320 GDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCCcEEEEECcCCeEEeeec
Confidence 67889999999998888873
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.99 E-value=0.1 Score=34.37 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=29.9
Q ss_pred CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc
Q 048199 424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS 460 (495)
Q Consensus 424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~ 460 (495)
....|..++|+|. ..+||.|+.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence 3456899999999 899999999999999998 4543
No 394
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.91 E-value=0.4 Score=44.51 Aligned_cols=108 Identities=9% Similarity=0.120 Sum_probs=65.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCC--------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCE-EEEecC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVS--------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNR-IASSDY 446 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~-l~sg~~ 446 (495)
.....+++++|+|++.++.... +.|..++.. + ........-...+.++|+|+ +.. +++-+.
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--------~~~~~~~~~~~pNGi~~s~d-g~~lyv~ds~ 154 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--------KVTVVADGLGFPNGIAFSPD-GKTLYVADSF 154 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--------EEEEEEEEESSEEEEEEETT-SSEEEEEETT
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C--------eEEEEecCcccccceEECCc-chheeecccc
Confidence 4568899999999988877654 345555555 2 11111222345789999999 654 457778
Q ss_pred CCcEEEEeCCCCcc-------eeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 447 EGIVTVWDVTTQQS-------VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 447 dg~v~iwd~~~~~~-------~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+.|..||+..... +..+..-.+..-.+++.. +|++.++.-..+.|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIV 208 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEE
Confidence 88999999863221 222222223477888988 888777655555553
No 395
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.90 E-value=0.016 Score=48.14 Aligned_cols=34 Identities=32% Similarity=0.694 Sum_probs=24.3
Q ss_pred CccccccccchhhhccccCC------------CCccc-hhhHHhhhc
Q 048199 51 KDMLCPICMQIIKEAFLTAC------------GHSFC-YMCIITHLR 84 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l~C------------GH~FC-~~Ci~~~~~ 84 (495)
|+.+||||+|.+-+.|.|-| +-+|= ..|+.++.+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 46789999999999998754 43442 347876643
No 396
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.90 E-value=0.017 Score=53.75 Aligned_cols=49 Identities=27% Similarity=0.609 Sum_probs=40.3
Q ss_pred CCCCccccccccchhhhccccCCCCccchhhHHhh--hcCCCCCCCCCCcC
Q 048199 48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITH--LRNKSDCPCCGHYL 96 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~--~~~~~~CP~Cr~~~ 96 (495)
.-++...|-||-+-.+=-..+||||-.|.-|-.+. +-....||.||...
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 34567889999999998889999999999998764 33457899999764
No 397
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=94.89 E-value=0.052 Score=53.56 Aligned_cols=97 Identities=14% Similarity=0.253 Sum_probs=73.4
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc------
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI------ 449 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~------ 449 (495)
.-++..+.|+|.|.+|++... .-|.+|+-... ..+..+.| ..|..+.|+|. +.+|.+=+..+.
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~--------~~l~~~~~-~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHA-AGVECWGGPSK--------AKLVRFRH-PDVKYLDFSPN-EKYLVTWSREPIIEPEIE 100 (561)
T ss_pred CcchhheeecCcchheehhhc-cceEEccccch--------hheeeeec-CCceecccCcc-cceeeeeccCCccChhhc
Confidence 456888999999999988764 45899988776 23344433 45888999999 889988655444
Q ss_pred ---------EEEEeCCCCcceeecccccCc--EE-EEEeecCCCCeE
Q 048199 450 ---------VTVWDVTTQQSVMEYEEHEKR--AW-SVDFSRTEPSML 484 (495)
Q Consensus 450 ---------v~iwd~~~~~~~~~~~~h~~~--v~-~v~~~~~~g~~l 484 (495)
+.+||+.+|..+..|.+-..+ .| -+.|+- +..++
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ 146 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYV 146 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhh
Confidence 999999999999999887666 66 678887 54443
No 398
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.84 E-value=0.0095 Score=47.64 Aligned_cols=34 Identities=24% Similarity=0.657 Sum_probs=27.9
Q ss_pred CCCCccccccccchhhhcc--ccCCCCccchhhHHh
Q 048199 48 ELDKDMLCPICMQIIKEAF--LTACGHSFCYMCIIT 81 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~Pv--~l~CGH~FC~~Ci~~ 81 (495)
.+.+.-.|++|...+.+++ ..||||.|+..|+.+
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 3456677999999999875 559999999999864
No 399
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.79 E-value=0.18 Score=39.83 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=59.5
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
..+..|++|+.+++|+-. ..+..+.. ++.|.++.-... ..|+.+-.+|+|-+|+-... .
T Consensus 16 ~eLlvGs~D~~IRvf~~~-----e~~~Ei~e------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---------l 74 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD-----EIVAEITE------TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---------L 74 (111)
T ss_pred ceEEEecCCcEEEEEeCC-----cEEEEEec------ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce---------e
Confidence 447789999999998642 34566653 567888776654 67899999999999976543 0
Q ss_pred eeecCCCCCeEEEEE---cCCCCCEEEEecCCCcEE
Q 048199 419 VVEMPTRSKLSCLSW---NKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~---~p~~~~~l~sg~~dg~v~ 451 (495)
.. ......+.++.+ +.|+..-|++|-.+|.|-
T Consensus 75 WR-iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WR-IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee-eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 00 112223445544 444345788898888764
No 400
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.78 E-value=0.46 Score=47.98 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=57.9
Q ss_pred CCcEEEEEEccCCCEEE-EEeCC--CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC--cE
Q 048199 376 ANIVSSIEFDRDDQLFA-TAGVS--RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG--IV 450 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~-s~s~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg--~v 450 (495)
.+.+....|+|||+.++ +.+.+ ..|.++|+.++ .......+........|+||+..++++....| .|
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g--------~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK--------TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNI 303 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC--------cEEEcccCCCccCccEECCCCCEEEEEECCCCCceE
Confidence 34456678999998655 44444 44666676665 11111112222334579999434555554444 47
Q ss_pred EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.++|+.++....... ... +...|+| +|.+|+-.+.
T Consensus 304 y~~dl~~g~~~rlt~-~g~--~~~~~SP-DG~~Ia~~~~ 338 (419)
T PRK04043 304 FMKKLNSGSVEQVVF-HGK--NNSSVST-YKNYIVYSSR 338 (419)
T ss_pred EEEECCCCCeEeCcc-CCC--cCceECC-CCCEEEEEEc
Confidence 777887766533222 111 1248999 9988876654
No 401
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.012 Score=61.40 Aligned_cols=39 Identities=28% Similarity=0.698 Sum_probs=33.9
Q ss_pred cccccccchhhhcc-ccCCCCccchhhHHhhhcCCCCCCCCCC
Q 048199 53 MLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNKSDCPCCGH 94 (495)
Q Consensus 53 l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~ 94 (495)
-.|+.|.-.+.-|+ -..|||+|++.|++ .....||.|+-
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc---cCcccCCccch
Confidence 47999999999996 56999999999999 34568999976
No 402
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.61 E-value=0.24 Score=49.60 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=71.8
Q ss_pred CCcEEEEEEccCCCEEEEEeC---CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec---CCCc
Q 048199 376 ANIVSSIEFDRDDQLFATAGV---SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD---YEGI 449 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~---~dg~ 449 (495)
...|...+|.|.|+.|++-+. -.++.+|-+.+..... ..+..+ .....+.+-|+|. |.+++.+. ..|.
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~----~lVk~~-dk~~~N~vfwsPk-G~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP----SLVKEL-DKKFANTVFWSPK-GRFVVVAALVSRRGD 518 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch----hhhhhh-cccccceEEEcCC-CcEEEEEEecccccc
Confidence 567888999999998776443 3578888888531111 111111 1234678999999 77776654 4678
Q ss_pred EEEEeCCCCcceee-cccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 450 VTVWDVTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 450 v~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+.++|.....+..+ ...|. ..+.+-|.| .|.|++|+|.-...+
T Consensus 519 l~F~D~~~a~~k~~~~~eh~-~at~veWDP-tGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHF-AATEVEWDP-TGRYVVTSSSSWRHK 562 (698)
T ss_pred eEEEecchhhhhhccCcccc-ccccceECC-CCCEEEEeeehhhhc
Confidence 99999874222111 12243 356788999 999999998755443
No 403
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=94.59 E-value=1.2 Score=36.22 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 048199 161 EEAERNMQILLDFLHCLRKQKVDELKEIQTD-LHYIKEDINAVERHRIDLYRARDRYSVKL 220 (495)
Q Consensus 161 ~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~-~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 220 (495)
..+...|+.|+.+|++.+..+...++..... ...|..++..++..+..+...+......+
T Consensus 42 ~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 42 AQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567889999999999999999999988777 58899999999999988888877655544
No 404
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.026 Score=50.50 Aligned_cols=69 Identities=23% Similarity=0.311 Sum_probs=61.6
Q ss_pred CCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
...+.|-|.|-++++++||+.|-|=+|-+.=|+.+++.-+ .-|+.|.+++..++.||+.+...|..+..
T Consensus 207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~ 276 (284)
T KOG4642|consen 207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLK 276 (284)
T ss_pred cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHH
Confidence 3456788999999999999999999999999999988754 78999999999999999999999888754
No 405
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.49 E-value=0.02 Score=38.31 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=22.9
Q ss_pred ccccccccchhhhcc-ccCCCCccchhhHHhhhcC-----CCCCCCCCCc
Q 048199 52 DMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRN-----KSDCPCCGHY 95 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~-----~~~CP~Cr~~ 95 (495)
.|.|||....++-|+ ...|-|.-|..-. .|+.. .-.||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~-~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLE-SFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHH-HHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHH-HHHHHhhccCCeECcCCcCc
Confidence 478999999999998 6689999887642 22221 1379999874
No 406
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.37 E-value=0.0089 Score=60.41 Aligned_cols=115 Identities=17% Similarity=0.280 Sum_probs=76.2
Q ss_pred cCCCcEEEEEEcc-CCCEEEEEe----CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC
Q 048199 374 HSANIVSSIEFDR-DDQLFATAG----VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG 448 (495)
Q Consensus 374 ~h~~~V~~l~~~p-~~~~l~s~s----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg 448 (495)
+|....++++|++ |.+.||.|- .|..++|||+.+...... ..+....+......+++|-.+ ..++.+|....
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk--e~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr 176 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK--ESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSR 176 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc--cccccccccccCccccccccC-cchhhcccccc
Confidence 6788999999998 555666552 256799999998733221 111121124445679999977 88899999999
Q ss_pred cEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 449 IVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 449 ~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.|+++|++. ......+ .+..+..+...|..+.++++-+ ||.|.
T Consensus 177 ~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iA 220 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIA 220 (783)
T ss_pred hhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCcee
Confidence 999999983 2222223 2445556666776677887766 55543
No 407
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.36 E-value=0.32 Score=52.27 Aligned_cols=97 Identities=9% Similarity=0.086 Sum_probs=66.3
Q ss_pred CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc-eeecccc
Q 048199 389 QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS-VMEYEEH 467 (495)
Q Consensus 389 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~-~~~~~~h 467 (495)
..-+.|-.+..+..||.+-..+.+. ......+.......|++-..+ | +||.|+.+|.|++||- .|.. -..|.+-
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v--~~~~k~Y~~~~~Fs~~aTt~~-G-~iavgs~~G~IRLyd~-~g~~AKT~lp~l 617 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLV--DSQSKQYSSKNNFSCFATTED-G-YIAVGSNKGDIRLYDR-LGKRAKTALPGL 617 (794)
T ss_pred CceEEEECCCceEEeccCCCCCcee--eccccccccCCCceEEEecCC-c-eEEEEeCCCcEEeecc-cchhhhhcCCCC
Confidence 3455677788999999986411111 111122234445777777765 4 8999999999999994 4433 3445577
Q ss_pred cCcEEEEEeecCCCCeEEEeeCCC
Q 048199 468 EKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 468 ~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
..+|.+|+.+. ||.+|+..+...
T Consensus 618 G~pI~~iDvt~-DGkwilaTc~ty 640 (794)
T PF08553_consen 618 GDPIIGIDVTA-DGKWILATCKTY 640 (794)
T ss_pred CCCeeEEEecC-CCcEEEEeecce
Confidence 88999999999 999988776543
No 408
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.34 E-value=0.24 Score=49.37 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=62.4
Q ss_pred CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE 466 (495)
Q Consensus 387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~ 466 (495)
.+..++.++.|+.+..+|..++..... . .... .....+.... +..|+.++.+|.|.+||..+|+.+..+..
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~---~--~~~~-~~~~ssp~i~---g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSELWK---N--DELK-YRQLTAPAVV---GGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEEEc---c--cccc-CCccccCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 466777778899999999987611100 0 0000 0111122222 56889999999999999999999988876
Q ss_pred ccCcEEE-EEeecCCCCeEEEeeCCCcEe
Q 048199 467 HEKRAWS-VDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 467 h~~~v~~-v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+...++. ..+. + ..|+.++.||.|.
T Consensus 349 ~~~~~~~sp~~~--~-~~l~v~~~dG~l~ 374 (377)
T TIGR03300 349 DGSGIASPPVVV--G-DGLLVQTRDGDLY 374 (377)
T ss_pred CCCccccCCEEE--C-CEEEEEeCCceEE
Confidence 6644433 2333 3 4588888999875
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.31 E-value=0.14 Score=33.70 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=28.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccc
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS 407 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~ 407 (495)
...|..++|+|...++|.+..||.|.+|.++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45699999999999999999999999999943
No 410
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.26 E-value=0.011 Score=64.52 Aligned_cols=47 Identities=32% Similarity=0.794 Sum_probs=41.1
Q ss_pred CCCCccccccccchhhhc-cccCCCCccchhhHHhhhcCCCCCCCCCC
Q 048199 48 ELDKDMLCPICMQIIKEA-FLTACGHSFCYMCIITHLRNKSDCPCCGH 94 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~P-v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~ 94 (495)
.+.+...|+||++.+.+- -+..|||.||.+|++-|+..+..||.|+.
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 445566999999999965 47799999999999999999999999983
No 411
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.19 E-value=0.06 Score=56.70 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=41.9
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF 436 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 436 (495)
.|+...++++|+-+.+.|+.|+..|.|++|++.++. .......|.+.|+-+.=+.|
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-------~e~s~ncH~SavT~vePs~d 1154 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------MEESVNCHQSAVTLVEPSVD 1154 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcc-------ccccccccccccccccccCC
Confidence 678899999999999999999999999999999982 11122235555555554444
No 412
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.12 E-value=0.22 Score=44.47 Aligned_cols=101 Identities=10% Similarity=0.037 Sum_probs=62.2
Q ss_pred CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE 466 (495)
Q Consensus 387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~ 466 (495)
.+..++.|+.++.|.+|...-. +.+.-....... .|-+.--.-+.+.+..+|..||.|+.|++.-++.+.....
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~e-~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGEE-SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred cCceEEeecccceEEEecCCcc-----chHHHhhhcccc-cceeccccccccceeEEeccCCceeeeccccCceeeeecc
Confidence 3557888999999999998732 001111111111 2222222223367899999999999999998887777777
Q ss_pred cc-CcEEEEEeecCCCCeEEEe--eCCCcEe
Q 048199 467 HE-KRAWSVDFSRTEPSMLVSG--SDDCKVL 494 (495)
Q Consensus 467 h~-~~v~~v~~~~~~g~~l~s~--s~D~~v~ 494 (495)
|+ .++.....+. .+.+|+.+ |.|..++
T Consensus 143 h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k 172 (238)
T KOG2444|consen 143 HNFESGEELIVVG-SDEFLKIADTSHDRVLK 172 (238)
T ss_pred ccCCCcceeEEec-CCceEEeeccccchhhh
Confidence 76 4554444444 45566666 5555443
No 413
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.037 Score=48.36 Aligned_cols=47 Identities=23% Similarity=0.601 Sum_probs=37.8
Q ss_pred Cccccccccchhhh--ccccCCCCccchhhHHhhhcCC--------CCCCCCCCcCc
Q 048199 51 KDMLCPICMQIIKE--AFLTACGHSFCYMCIITHLRNK--------SDCPCCGHYLT 97 (495)
Q Consensus 51 ~~l~C~IC~~~~~~--Pv~l~CGH~FC~~Ci~~~~~~~--------~~CP~Cr~~~~ 97 (495)
..-.|.+|.-.+.. -+-|.|-|.|...|+..|..+- ..||.|..++-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 34569999999874 4677899999999999987642 38999988764
No 414
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.93 E-value=2.4 Score=40.63 Aligned_cols=20 Identities=30% Similarity=0.873 Sum_probs=15.6
Q ss_pred ccccccchhhhccccCCCCccchhhHHh
Q 048199 54 LCPICMQIIKEAFLTACGHSFCYMCIIT 81 (495)
Q Consensus 54 ~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~ 81 (495)
.|+||. .+..+.||..|+..
T Consensus 1 ~C~iC~--------~~~~~~~C~~C~~~ 20 (302)
T PF10186_consen 1 QCPICH--------NSRRRFYCANCVNN 20 (302)
T ss_pred CCCCCC--------CCCCCeECHHHHHH
Confidence 499998 45667788888886
No 415
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=93.78 E-value=1.2 Score=41.12 Aligned_cols=94 Identities=11% Similarity=0.208 Sum_probs=61.0
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCC-C----------cEEEEEcccc---ccC-------CC------CcC--CCeee---
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVS-R----------RIKVFDFASV---VNE-------PA------DVH--CPVVE--- 421 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d-~----------~i~vwd~~~~---~~~-------~~------~~~--~~~~~--- 421 (495)
++...|.++.|+|.-++|+.||.. . -+..|.+-++ .+. .. ... .....
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence 346789999999988877766542 1 1455555433 000 00 000 00001
Q ss_pred -cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc
Q 048199 422 -MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE 468 (495)
Q Consensus 422 -~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~ 468 (495)
....+.|..+..+|| +..|++...+|.|.+|++.+......+.-++
T Consensus 225 ~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred cccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 123567999999999 9999999999999999999877666655443
No 416
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=93.75 E-value=0.4 Score=50.99 Aligned_cols=92 Identities=12% Similarity=0.252 Sum_probs=70.6
Q ss_pred CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc
Q 048199 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE 465 (495)
Q Consensus 387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~ 465 (495)
++..++-|+....+-.+|+++. ....... ..+++.-+..+ +.++.+|+..|+|.+-|.++.+.+.+|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~--------~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE--------KETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred CCcceeecchhhheeeeecccc--------eeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeee
Confidence 4557778888888889999886 1111111 22236666665 7799999999999999999999999999
Q ss_pred cccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 466 EHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 466 ~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.|++.|..++. .|+.|+|+|..+.
T Consensus 215 aHs~siSDfDv---~GNlLitCG~S~R 238 (1118)
T KOG1275|consen 215 AHSGSISDFDV---QGNLLITCGYSMR 238 (1118)
T ss_pred ccccceeeeec---cCCeEEEeecccc
Confidence 99999987665 6789999987543
No 417
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.57 E-value=1.1 Score=47.42 Aligned_cols=135 Identities=7% Similarity=0.037 Sum_probs=84.1
Q ss_pred HhhhhhhhcccCce---EEE--EeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC
Q 048199 349 QSVLTTFTRYSRLR---VIA--ELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP 423 (495)
Q Consensus 349 ~~~lw~~~~~~~~~---~~~--~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 423 (495)
.+++|++.+-++.. .+. .+.+........++.++++|.+-..+|.|-.+|.|..+.=+-. ++ .+........
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~-RD--rgsr~~~~~~ 169 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL-RD--RGSRQDYSHR 169 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch-hc--cccceeeecc
Confidence 68899987654433 121 1111111124678999999999889999999999988853321 00 0011122234
Q ss_pred CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc--eeecccccCcEEEEEeecCCCCeEEEee
Q 048199 424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS--VMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
...+|+++.+..+....++.+. ...|.+|.+. |+. +..+..|...++|..|++..+.++++++
T Consensus 170 ~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 170 GKEPITGLALRSDGKSVLFVAT-TEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred CCCCceeeEEecCCceeEEEEe-cceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence 5568999999888444233333 3579999987 443 5557778889999999973333444443
No 418
>PHA03096 p28-like protein; Provisional
Probab=93.54 E-value=0.033 Score=52.26 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=32.4
Q ss_pred cccccccchhhhc-----c--cc-CCCCccchhhHHhhhcCC---CCCCCCCCc
Q 048199 53 MLCPICMQIIKEA-----F--LT-ACGHSFCYMCIITHLRNK---SDCPCCGHY 95 (495)
Q Consensus 53 l~C~IC~~~~~~P-----v--~l-~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~ 95 (495)
-.|.||++...+- . +| .|-|.||..||..|.... ..||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 5799999988742 1 33 699999999999998764 356666553
No 419
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.48 E-value=0.058 Score=56.47 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=59.2
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
+++++|||..-+|+.|=.-|-+.+|...+. ........|..+|..+.|+++ |..++|++.-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~-------e~htv~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-------ETHTVVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCc-------eeeeeccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence 567999999889999988899999998775 223334468889999999999 9999999999999999754
No 420
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.44 E-value=1.1 Score=43.11 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=69.7
Q ss_pred CcEEEEEEccCCCEEEEE-eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC-cEEEEe
Q 048199 377 NIVSSIEFDRDDQLFATA-GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG-IVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg-~v~iwd 454 (495)
..-.+|+|+||++.|..+ +..+.|.-|++.............+......+..-.++...+ +++.+++-.+| .|.+|+
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC-CCEEEecccCCceEEEEC
Confidence 344689999999766655 445778888876310001010111111123345556677777 77776666665 899999
Q ss_pred CCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
.. |+.+..+.-....+.+++|--.+.+.|+..+
T Consensus 242 pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 242 PD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 88 9999888877678889999643445554444
No 421
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=0.27 Score=53.15 Aligned_cols=95 Identities=17% Similarity=0.242 Sum_probs=59.9
Q ss_pred ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee
Q 048199 342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE 421 (495)
Q Consensus 342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 421 (495)
+-|.+.+.+.+.|... ...+ +..++ ...++|++++|+.+|..++.|-.+|.|.+||+..+. .......
T Consensus 103 vi~Ts~ghvl~~d~~~--nL~~---~~~ne--~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-----~l~~i~e 170 (1206)
T KOG2079|consen 103 VIGTSHGHVLLSDMTG--NLGP---LHQNE--RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-----ILKVITE 170 (1206)
T ss_pred EEEcCchhhhhhhhhc--ccch---hhcCC--ccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-----ceeeeee
Confidence 3455555666766642 1111 12222 347899999999999999999999999999999860 0111111
Q ss_pred cCC-CCCeEEEEEcCCCCCEEEEecCCCc
Q 048199 422 MPT-RSKLSCLSWNKFSKNRIASSDYEGI 449 (495)
Q Consensus 422 ~~~-~~~i~~~~~~p~~~~~l~sg~~dg~ 449 (495)
.++ ...+..+.|..+ +..+++++..|.
T Consensus 171 ~~ap~t~vi~v~~t~~-nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQ-NSKLLTSDTGGS 198 (1206)
T ss_pred cCCccceEEEEEEeCC-CcEEEEccCCCc
Confidence 122 223555666666 557888887776
No 422
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=93.27 E-value=0.57 Score=52.14 Aligned_cols=105 Identities=22% Similarity=0.306 Sum_probs=70.4
Q ss_pred CCcEEEEEEccCCCEEEEEeC---C---CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---
Q 048199 376 ANIVSSIEFDRDDQLFATAGV---S---RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY--- 446 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~---d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~--- 446 (495)
.+.-..|+|-.||.+||+.+. + +.+|||+-+... .....++. +--.+++|.|. |++||+...
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L---~stSE~v~-----gLe~~l~WrPs-G~lIA~~q~~~~ 279 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGEL---QSTSEPVD-----GLEGALSWRPS-GNLIASSQRLPD 279 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceE---EeccccCC-----CccCCccCCCC-CCEEEEEEEcCC
Confidence 345568999999999998876 2 579999877421 11111211 22347899999 999988764
Q ss_pred CCcEEEEeCCCCcceeec----ccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 447 EGIVTVWDVTTQQSVMEY----EEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 447 dg~v~iwd~~~~~~~~~~----~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
...|.+|. ++|..-..| ......|..+.|++ |+.+||..-.|.
T Consensus 280 ~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~ 326 (928)
T PF04762_consen 280 RHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR 326 (928)
T ss_pred CcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC
Confidence 33566776 445433333 23456899999999 999998876554
No 423
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=0.054 Score=53.58 Aligned_cols=48 Identities=38% Similarity=0.737 Sum_probs=34.6
Q ss_pred ccccccccchhhhc----cccCCCCccchhhHHhhhcCC------CCCCC--CCCcCccC
Q 048199 52 DMLCPICMQIIKEA----FLTACGHSFCYMCIITHLRNK------SDCPC--CGHYLTNN 99 (495)
Q Consensus 52 ~l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~~~~~------~~CP~--Cr~~~~~~ 99 (495)
..+|.||..-...+ .+..|||-||..|..++++.. .+||. |...++..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~ 205 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLE 205 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHH
Confidence 56799999444333 256899999999999998843 47875 65655543
No 424
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.04 E-value=0.05 Score=50.16 Aligned_cols=50 Identities=18% Similarity=0.513 Sum_probs=40.2
Q ss_pred CCCCccccccccchhhh---ccccCCCCccchhhHHhhhcCC---CCCCCCCCcCc
Q 048199 48 ELDKDMLCPICMQIIKE---AFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLT 97 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~ 97 (495)
.+..-++||+-.+.-++ |+++.|||+.-+.-+.+.-++. ++||.|-....
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~ 387 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSK 387 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchh
Confidence 45667899999988875 7899999999999998876654 58999965443
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.85 E-value=0.48 Score=30.31 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCC--CEEEEecCCCcEEEEeCCC
Q 048199 426 SKLSCLSWNKFSK--NRIASSDYEGIVTVWDVTT 457 (495)
Q Consensus 426 ~~i~~~~~~p~~~--~~l~sg~~dg~v~iwd~~~ 457 (495)
+.+.++.|+|..+ .+|+-.-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3578999998755 6888888889999999995
No 426
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.80 E-value=0.23 Score=52.51 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=56.1
Q ss_pred CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 424 TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 424 ~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
+....+|++|+.+ .++|+.|+..|.|++|++.+|.......+|...|+-|.=+. +|.++.+.+
T Consensus 1100 ~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSS 1162 (1516)
T ss_pred cccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccC-Ccceeeeec
Confidence 5567899999998 88999999999999999999999999999999999998887 777766654
No 427
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=92.79 E-value=0.083 Score=38.02 Aligned_cols=46 Identities=24% Similarity=0.638 Sum_probs=19.7
Q ss_pred cccccccchhh-----hcccc--CCCCccchhhHHhhhc-CCCCCCCCCCcCcc
Q 048199 53 MLCPICMQIIK-----EAFLT--ACGHSFCYMCIITHLR-NKSDCPCCGHYLTN 98 (495)
Q Consensus 53 l~C~IC~~~~~-----~Pv~l--~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~ 98 (495)
-.|.||++..- +|.+. -|+-..|+.|.+--.+ ..+.||.|+.++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 46999999885 45433 6999999999985443 45789999987754
No 428
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.72 E-value=0.063 Score=49.68 Aligned_cols=43 Identities=28% Similarity=0.708 Sum_probs=37.4
Q ss_pred ccccccccchhh----hccccCCCCccchhhHHhhhcCCCCCCCCCC
Q 048199 52 DMLCPICMQIIK----EAFLTACGHSFCYMCIITHLRNKSDCPCCGH 94 (495)
Q Consensus 52 ~l~C~IC~~~~~----~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~ 94 (495)
...||||.+.+. +|..++|||.-..+|.+...-....||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 455999999875 4668899999999999999887899999988
No 429
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.70 E-value=0.097 Score=43.66 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=35.2
Q ss_pred CCccccccccchhhhccccC--CCCcc---chhhHHhhhcCC--CCCCCCCCcCcc
Q 048199 50 DKDMLCPICMQIIKEAFLTA--CGHSF---CYMCIITHLRNK--SDCPCCGHYLTN 98 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l~--CGH~F---C~~Ci~~~~~~~--~~CP~Cr~~~~~ 98 (495)
..+-.|-||.+.-. +..-| |-.+. ++.|+++|+..+ ..||+|+.++..
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 34567999998864 33334 54433 789999999876 489999998865
No 430
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.69 E-value=1.3 Score=44.68 Aligned_cols=102 Identities=22% Similarity=0.216 Sum_probs=58.7
Q ss_pred EEEEEEccCCCEEEEE-eCCCc----EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC------
Q 048199 379 VSSIEFDRDDQLFATA-GVSRR----IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE------ 447 (495)
Q Consensus 379 V~~l~~~p~~~~l~s~-s~d~~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d------ 447 (495)
+..+.++|++++++.+ +..|. |+++|+.++ ..+...-......++.|.+++..++++...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--------~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--------KFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--------EEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--------cCcCCcccccccceEEEeCCCCEEEEEEeCccccccc
Confidence 4467899999987744 44444 999999987 1111110111123499999944445554333
Q ss_pred ----CcEEEEeCCCCcce--eecccccCc--EEEEEeecCCCCeEEEeeC
Q 048199 448 ----GIVTVWDVTTQQSV--MEYEEHEKR--AWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 448 ----g~v~iwd~~~~~~~--~~~~~h~~~--v~~v~~~~~~g~~l~s~s~ 489 (495)
..|..|.+.+...- ..|.+.... ...+..++ ++.+|+..+.
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~ 246 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSS 246 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEE
T ss_pred CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEE
Confidence 23788888765432 344443332 56788888 8888765443
No 431
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.65 E-value=1.8 Score=39.60 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=61.4
Q ss_pred CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199 388 DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH 467 (495)
Q Consensus 388 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h 467 (495)
..+++.||..+.+.--|..++ ...-..-...++-+-+.- - +++++.|+++|.+.+.++++|.....|..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG--------~~~We~ilg~RiE~sa~v-v-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSG--------NLIWEAILGVRIECSAIV-V-GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCC--------cEEeehhhCceeeeeeEE-E-CCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 456777788888888887776 111111112223222221 1 778999999999999999999877777643
Q ss_pred cCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 468 EKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 468 ~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
...-......+ ++..+..|+.|+..+
T Consensus 93 ~~vk~~a~~d~-~~glIycgshd~~~y 118 (354)
T KOG4649|consen 93 ETVKVRAQCDF-DGGLIYCGSHDGNFY 118 (354)
T ss_pred hhhccceEEcC-CCceEEEecCCCcEE
Confidence 22111223344 788999999998764
No 432
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.099 Score=47.54 Aligned_cols=36 Identities=19% Similarity=0.805 Sum_probs=31.3
Q ss_pred CccccccccchhhhccccCC----CCccchhhHHhhhcCC
Q 048199 51 KDMLCPICMQIIKEAFLTAC----GHSFCYMCIITHLRNK 86 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l~C----GH~FC~~Ci~~~~~~~ 86 (495)
..|.|.+|.|.+.|-....| .|-||..|-...++.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 45899999999999876666 8999999999988764
No 433
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.59 E-value=0.61 Score=51.22 Aligned_cols=96 Identities=22% Similarity=0.350 Sum_probs=63.9
Q ss_pred EEEEEccCCCEEEEEe----CC-CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec---CCCcEE
Q 048199 380 SSIEFDRDDQLFATAG----VS-RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD---YEGIVT 451 (495)
Q Consensus 380 ~~l~~~p~~~~l~s~s----~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~---~dg~v~ 451 (495)
.+|.|--||++|++.. .+ ++|+|||-+...+. ...+... .-.+++|-|. |..+++-. .|+.|.
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns---~se~~~~-----l~~~LsWkPs-gs~iA~iq~~~sd~~Iv 269 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNS---TSEPVEG-----LQHSLSWKPS-GSLIAAIQCKTSDSDIV 269 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccchhhc---ccCcccc-----cccceeecCC-CCeEeeeeecCCCCcEE
Confidence 3588999999999832 24 89999998832111 1122222 2348999998 88888743 455788
Q ss_pred EEeCCCCc----ceeecccccCcEEEEEeecCCCCeEEE
Q 048199 452 VWDVTTQQ----SVMEYEEHEKRAWSVDFSRTEPSMLVS 486 (495)
Q Consensus 452 iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~g~~l~s 486 (495)
+|.-+ |. .+-.+......|..++|+. ++..|+.
T Consensus 270 ffErN-GL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv 306 (1265)
T KOG1920|consen 270 FFERN-GLRHGEFVLPFPLDEKEVEELAWNS-NSDILAV 306 (1265)
T ss_pred EEecC-CccccccccCCcccccchheeeecC-CCCceee
Confidence 88743 43 3333333455599999999 9998887
No 434
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.57 E-value=0.047 Score=44.30 Aligned_cols=43 Identities=23% Similarity=0.478 Sum_probs=33.8
Q ss_pred ccccccccchhhh--cc-ccCCC------CccchhhHHhhhcCCCCCCCCCC
Q 048199 52 DMLCPICMQIIKE--AF-LTACG------HSFCYMCIITHLRNKSDCPCCGH 94 (495)
Q Consensus 52 ~l~C~IC~~~~~~--Pv-~l~CG------H~FC~~Ci~~~~~~~~~CP~Cr~ 94 (495)
.+.|.||++...+ -| .++|| |.||..|+.+|-....+-|.=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccc
Confidence 6789999999998 44 56777 67999999999665566776554
No 435
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.55 E-value=1 Score=47.56 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=60.9
Q ss_pred CcEEEEEEccCCCEEEEEe------CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC----
Q 048199 377 NIVSSIEFDRDDQLFATAG------VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---- 446 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---- 446 (495)
..+.+.+++|+|+.++..- .|..-.||-...+ +...++ . .....+.-.|+|| +..|++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-----g~~~~l--t-~g~~~t~PsWspD-G~~lw~v~dg~~~ 420 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-----GVAVQV--L-EGHSLTRPSWSLD-ADAVWVVVDGNTV 420 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-----Ccceee--e-cCCCCCCceECCC-CCceEEEecCcce
Confidence 4678899999999877654 2444455543322 001121 1 1223677889999 555555432
Q ss_pred --------CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 447 --------EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 447 --------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+.+.+.++..++... ...+.|..+.|+| ||..|+-.. ++.|.
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~ 471 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVY 471 (591)
T ss_pred EEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEE
Confidence 2234334555444433 2355799999999 999877655 35554
No 436
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.42 E-value=0.091 Score=33.86 Aligned_cols=38 Identities=26% Similarity=0.721 Sum_probs=24.3
Q ss_pred cccccchhhhccccC---CCCccchhhHHhhhcCCC--CCCCC
Q 048199 55 CPICMQIIKEAFLTA---CGHSFCYMCIITHLRNKS--DCPCC 92 (495)
Q Consensus 55 C~IC~~~~~~Pv~l~---CGH~FC~~Ci~~~~~~~~--~CP~C 92 (495)
|.+|.++...-+.-+ |+=.+...|+.+|+.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888888776554 888899999999998765 79988
No 437
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.29 E-value=0.39 Score=50.11 Aligned_cols=92 Identities=14% Similarity=0.188 Sum_probs=69.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCC-----------CCEEEEe
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFS-----------KNRIASS 444 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~-----------~~~l~sg 444 (495)
..-.++.|+|.| +|+.|+ ...|.+-|..+. ..+..+ .|...|+.+.|.|-. ..+|+++
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~--------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa 85 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSL--------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA 85 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhh--------hhhhccccCccceeEEEeccCCCchhccCccccceeEEec
Confidence 335678888865 666665 457888888775 222222 466789999998741 3478999
Q ss_pred cCCCcEEEEeCCCCcceeecccccCcEEEEEeec
Q 048199 445 DYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478 (495)
Q Consensus 445 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 478 (495)
+..|.|.+||+..+..+..+..|.+++-.++|-+
T Consensus 86 D~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 86 DISGRIILVDFVLASVINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred cccCcEEEEEehhhhhhhhhcCCCcchhheeeee
Confidence 9999999999999999999999999999998865
No 438
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.24 E-value=1.8 Score=41.06 Aligned_cols=99 Identities=12% Similarity=0.093 Sum_probs=65.3
Q ss_pred EEEEcc-CCCEEEEEeCCCc-EEEEEccccccCCCCcCCCeeecCCCCC--eEEEEEcCCCCCEEEEe-----cCCCcEE
Q 048199 381 SIEFDR-DDQLFATAGVSRR-IKVFDFASVVNEPADVHCPVVEMPTRSK--LSCLSWNKFSKNRIASS-----DYEGIVT 451 (495)
Q Consensus 381 ~l~~~p-~~~~l~s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~p~~~~~l~sg-----~~dg~v~ 451 (495)
+++.+| ....++.+-.-|+ ..+||..++. .........+. .---.|++| |.+|++. ...|.|-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~-------~~~~~~a~~gRHFyGHg~fs~d-G~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQ-------LLQRLWAPPGRHFYGHGVFSPD-GRLLYTTENDYETGRGVIG 80 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCc-------eeeEEcCCCCCEEecCEEEcCC-CCEEEEeccccCCCcEEEE
Confidence 567788 4555666666555 6678888761 11111111111 123579999 8888873 4467899
Q ss_pred EEeCC-CCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 452 VWDVT-TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 452 iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
|||.. +...+..|..|.-.-..+.+.| ||..|+.+-
T Consensus 81 Vyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVAN 117 (305)
T PF07433_consen 81 VYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVAN 117 (305)
T ss_pred EEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEc
Confidence 99998 6677888888776667788999 987777653
No 439
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.13 E-value=0.065 Score=45.05 Aligned_cols=49 Identities=27% Similarity=0.621 Sum_probs=34.1
Q ss_pred CCccccccccchhhh---c--c--ccCCCCccchhhHHhhhcCC-----------CCCCCCCCcCcc
Q 048199 50 DKDMLCPICMQIIKE---A--F--LTACGHSFCYMCIITHLRNK-----------SDCPCCGHYLTN 98 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~---P--v--~l~CGH~FC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 98 (495)
++..-|.||.-+--+ | + .+.||..|.+-|+..|+..- +.||.|..++.+
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 334446666544322 2 2 45899999999999998741 379999998865
No 440
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.46 Score=46.51 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=68.4
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC-------cCCCee-ecCCCCCeEEEEEcCCCCCEEEEec
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD-------VHCPVV-EMPTRSKLSCLSWNKFSKNRIASSD 445 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~-------~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~ 445 (495)
-|..+|..+.+.|.+..+++....|.|..|.....++.+.. +..... .........++.|+|+ +..|.+-.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~ 220 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD-GAQISTLN 220 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc-cCcccccC
Confidence 38999999999999999999999999999998853222211 001111 1123455789999999 99999999
Q ss_pred CCCcEEEEeCCCCcceeec
Q 048199 446 YEGIVTVWDVTTQQSVMEY 464 (495)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~ 464 (495)
.|..|+++++++|..++.+
T Consensus 221 ~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccEEEEEEeccchhhhhh
Confidence 9999999999998766655
No 441
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.02 E-value=4.8 Score=42.51 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=11.6
Q ss_pred CCCCCCCCCCcCccC
Q 048199 85 NKSDCPCCGHYLTNN 99 (495)
Q Consensus 85 ~~~~CP~Cr~~~~~~ 99 (495)
....||.|.+.+...
T Consensus 283 ~~~~Cp~C~~~~~~~ 297 (562)
T PHA02562 283 KGGVCPTCTQQISEG 297 (562)
T ss_pred CCCCCCCCCCcCCCc
Confidence 356899999998653
No 442
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=91.65 E-value=0.029 Score=51.31 Aligned_cols=47 Identities=28% Similarity=0.692 Sum_probs=37.6
Q ss_pred ccccccccchhhh-c-c-ccCCCCccchhhHHhhhcC-----------------------CCCCCCCCCcCcc
Q 048199 52 DMLCPICMQIIKE-A-F-LTACGHSFCYMCIITHLRN-----------------------KSDCPCCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~~~~~~-P-v-~l~CGH~FC~~Ci~~~~~~-----------------------~~~CP~Cr~~~~~ 98 (495)
...|.||+--|.+ | . .++|-|-|...|+.+|+.. .-.||+||.++..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 4579999999986 4 2 5689999999999998863 0159999998865
No 443
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.072 Score=49.04 Aligned_cols=41 Identities=27% Similarity=0.681 Sum_probs=28.7
Q ss_pred ccccccchhhh-ccccCCCCccchhhHHhhhcCCCCCCCCCCcC
Q 048199 54 LCPICMQIIKE-AFLTACGHSFCYMCIITHLRNKSDCPCCGHYL 96 (495)
Q Consensus 54 ~C~IC~~~~~~-Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~ 96 (495)
.|--|.-.+.- -.++||-|+||..|..-. .-+.||.|-.++
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcC--ccccCcCcccHH
Confidence 46556544332 258899999999997642 246899997765
No 444
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=91.59 E-value=0.037 Score=39.31 Aligned_cols=42 Identities=31% Similarity=0.591 Sum_probs=24.7
Q ss_pred ccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
++.||.|...+. +.. ||-+|..|-..+. ....||.|.+++..
T Consensus 1 e~~CP~C~~~L~-~~~---~~~~C~~C~~~~~-~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELE-WQG---GHYHCEACQKDYK-KEAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEE-EET---TEEEETTT--EEE-EEEE-TTT-SB-EE
T ss_pred CCcCCCCCCccE-EeC---CEEECccccccce-ecccCCCcccHHHH
Confidence 468999998854 322 8999999988754 34679999999864
No 445
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.46 E-value=0.13 Score=46.02 Aligned_cols=51 Identities=20% Similarity=0.472 Sum_probs=40.8
Q ss_pred Cccccccccchhhhcc----ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcc
Q 048199 51 KDMLCPICMQIIKEAF----LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYP 103 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv----~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 103 (495)
-.++|||-+-.+..-. .-+|||+|-.+-+.+.- ...|++|+..+...+.++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEe
Confidence 4578999998887653 44899999999888764 568999999998877543
No 446
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.45 E-value=2 Score=43.55 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=33.8
Q ss_pred CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 438 KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 438 ~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
|.+|+..+ ++.|.+||+.++..+..+... .|..|.|++ +|.+++-.+.|..
T Consensus 117 G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~-~g~~val~t~~~i 167 (443)
T PF04053_consen 117 GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSD-DGELVALVTKDSI 167 (443)
T ss_dssp SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-T-TSSEEEEE-S-SE
T ss_pred CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEEC-CCCEEEEEeCCeE
Confidence 45555554 348999999999999999743 489999999 9999998887754
No 447
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=91.39 E-value=2 Score=39.79 Aligned_cols=112 Identities=11% Similarity=0.123 Sum_probs=63.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc--cCCCC-cCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV--NEPAD-VHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGI 449 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~--~~~~~-~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~ 449 (495)
.++..+-.|+|+|.++.|+.+-...-.+||.+.... ..+.. ...... ....-..+.++.++|..+++++-++.+..
T Consensus 115 ~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~ 194 (248)
T PF06977_consen 115 KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL 194 (248)
T ss_dssp --SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence 356779999999987777777777788888887621 00000 000000 01123458899999998888888889999
Q ss_pred EEEEeCCCCcceeecc--c--cc-----CcEEEEEeecCCCCeEEEe
Q 048199 450 VTVWDVTTQQSVMEYE--E--HE-----KRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~--~--h~-----~~v~~v~~~~~~g~~l~s~ 487 (495)
|.++| .+|+.+..+. . |. ...-.|+|.+ +|++.++.
T Consensus 195 l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs 239 (248)
T PF06977_consen 195 LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS 239 (248)
T ss_dssp EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE
T ss_pred EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc
Confidence 99999 5677655442 1 11 2356899999 88776665
No 448
>PHA02862 5L protein; Provisional
Probab=91.28 E-value=0.12 Score=42.23 Aligned_cols=46 Identities=20% Similarity=0.509 Sum_probs=34.2
Q ss_pred ccccccchhhhccccCCC-----CccchhhHHhhhcCC--CCCCCCCCcCccCC
Q 048199 54 LCPICMQIIKEAFLTACG-----HSFCYMCIITHLRNK--SDCPCCGHYLTNNQ 100 (495)
Q Consensus 54 ~C~IC~~~~~~Pv~l~CG-----H~FC~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 100 (495)
.|-||.+.-.+.+ -||. .--++.|+.+|+..+ ..||+|+.++....
T Consensus 4 iCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 4 ICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred EEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 6999999876543 4443 234689999999865 48999999987543
No 449
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.06 E-value=0.086 Score=33.92 Aligned_cols=31 Identities=35% Similarity=0.894 Sum_probs=23.0
Q ss_pred ccCC-CCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 67 LTAC-GHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 67 ~l~C-GH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
.+.| -|-.|..|+...+..+..||+|++++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 4456 678899999999999999999999874
No 450
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.97 E-value=4.4 Score=39.29 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=67.9
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
..++|++|+-- .+. |+.+ ....|.+|++.... ...+.........+.++... +++|+.|+....|.++.
T Consensus 87 ~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~-----~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 87 VKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSK-----TLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp ESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTS-----SEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred ecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcc-----cchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEE
Confidence 36889998866 343 4333 35899999998861 01222333344467777777 56999999888888774
Q ss_pred CCC-Ccceeeccc--ccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 455 VTT-QQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 455 ~~~-~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+. +..+..+.. ...+++++.|-+ ++..++.+..+|.|.
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLF 197 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEE
T ss_pred EEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEE
Confidence 432 222333222 355788888886 556888888888875
No 451
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=0.086 Score=55.77 Aligned_cols=37 Identities=30% Similarity=0.661 Sum_probs=29.6
Q ss_pred CCCCccccccccchhh-hcc-ccCCCCccchhhHHhhhc
Q 048199 48 ELDKDMLCPICMQIIK-EAF-LTACGHSFCYMCIITHLR 84 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~-~Pv-~l~CGH~FC~~Ci~~~~~ 84 (495)
.++..-.|.+|...+- .|. ..||||.|.+.||++...
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3555678999998875 576 559999999999997654
No 452
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.86 E-value=2.4 Score=43.36 Aligned_cols=112 Identities=8% Similarity=0.091 Sum_probs=67.7
Q ss_pred cCCCcEEEEEEccC----CCEEEEEeCCCcEEEEEccccccC-CCCcCCCeeecCCCCC--eEEEEEcCCCCCEEEEecC
Q 048199 374 HSANIVSSIEFDRD----DQLFATAGVSRRIKVFDFASVVNE-PADVHCPVVEMPTRSK--LSCLSWNKFSKNRIASSDY 446 (495)
Q Consensus 374 ~h~~~V~~l~~~p~----~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~--i~~~~~~p~~~~~l~sg~~ 446 (495)
|.-..|.++.|.|- ..-|+..-..+.|.||.+.....+ -+-.......+...-+ .-++.|||. ..+|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEec
Confidence 45566999999984 224556667899999998743100 0000111122221112 347889999 777776555
Q ss_pred CCcEEEEeCCC--CcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 447 EGIVTVWDVTT--QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 447 dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
...--+++++. .+....+. -.+.|.+.+|.+ ||..|+.+-
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~-DG~RLVVAv 174 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTK-DGQRLVVAV 174 (671)
T ss_pred CceeEeeeeeeCCceEEEecc-CCceEEEEEecC-cCCEEEEEe
Confidence 44445666653 23334443 467899999999 998877664
No 453
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.83 E-value=2.2 Score=47.18 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=67.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc---ccCC----------C--CcCCCeeecC-----------------
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV---VNEP----------A--DVHCPVVEMP----------------- 423 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~---~~~~----------~--~~~~~~~~~~----------------- 423 (495)
...|.+++|+||++.++-...+.++-+-+..-. .+.+ . +.....+.+.
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 567999999999999998888888877664221 0000 0 0000001110
Q ss_pred -----CCCCeEEEEEcCCCCCEEEE-----ecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 424 -----TRSKLSCLSWNKFSKNRIAS-----SDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 424 -----~~~~i~~~~~~p~~~~~l~s-----g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
-.+.=.+|.|-.| |.++++ ......|+|||.. |..-.+-....+-=.+++|.| .|..+++-..
T Consensus 189 ~~~~~~~~~~~~IsWRgD-g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~ 261 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRGD-GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQC 261 (1265)
T ss_pred ccchhhccCCceEEEccC-CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeee
Confidence 0112245999999 888887 3333789999976 433222222233345789999 8888887653
No 454
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=90.79 E-value=1.4 Score=44.44 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=64.8
Q ss_pred CCcEEEEEEccCCCEEEEEe---CC-CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE-
Q 048199 376 ANIVSSIEFDRDDQLFATAG---VS-RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV- 450 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s---~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v- 450 (495)
...+..-.|+|++..++..+ .. ..+.++|+.++. .+. .....+.-..-+|+||+..++++...||..
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-------~~~-i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-------RPV-ILNFNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-------cce-eeccCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 45566778999888655432 22 358888998872 111 111223334568999976777888888875
Q ss_pred -EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 451 -TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 451 -~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.+.|+.++. +..+..-.+.-..=.|+| ||+.|+-.|+
T Consensus 264 iy~~dl~~~~-~~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sd 301 (425)
T COG0823 264 IYLMDLDGKN-LPRLTNGFGINTSPSWSP-DGSKIVFTSD 301 (425)
T ss_pred EEEEcCCCCc-ceecccCCccccCccCCC-CCCEEEEEeC
Confidence 455666555 333443333333567899 9998877765
No 455
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.78 E-value=1.3 Score=36.95 Aligned_cols=67 Identities=10% Similarity=0.234 Sum_probs=43.3
Q ss_pred CCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhhhccCCCchhhhhhhhhhccCCcHHHHHHHHHH
Q 048199 71 GHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSL 150 (495)
Q Consensus 71 GH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (495)
-+.||..|=.+.+. .||.|..++.-..-.+.+.. -......+.||+.+.....+....+....+.
T Consensus 27 ~~~fC~kCG~~tI~---~Cp~C~~~IrG~y~v~gv~~------------~g~~~~~PsYC~~CGkpyPWt~~~L~aa~el 91 (158)
T PF10083_consen 27 REKFCSKCGAKTIT---SCPNCSTPIRGDYHVEGVFG------------LGGHYEAPSYCHNCGKPYPWTENALEAANEL 91 (158)
T ss_pred HHHHHHHhhHHHHH---HCcCCCCCCCCceecCCeee------------eCCCCCCChhHHhCCCCCchHHHHHHHHHHH
Confidence 35699999998876 59999998865322221110 0123447889999999877766666555444
Q ss_pred HH
Q 048199 151 LS 152 (495)
Q Consensus 151 l~ 152 (495)
+.
T Consensus 92 ~e 93 (158)
T PF10083_consen 92 IE 93 (158)
T ss_pred HH
Confidence 44
No 456
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=1.2 Score=44.77 Aligned_cols=122 Identities=15% Similarity=0.101 Sum_probs=70.3
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeecc-----------ccc---cCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-----------DIF---HSANIVSSIEFDRDDQLFATAGVSRRIKVFD 404 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~-----------~~~---~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd 404 (495)
..++.+.+| .+..|+..++.-...-+.+..+ .++ .-+-.|..+..++.|..++-+|.+|.+-++=
T Consensus 53 rN~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 53 RNVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred cchhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 335566666 7889997654322222221111 010 1234678888999999999999888665543
Q ss_pred ccc-c-ccCCCCcCCCe-----------eecCCCCCeEEEEEcCCC--CCEEEEecCCCcEEEEeCCCCcce
Q 048199 405 FAS-V-VNEPADVHCPV-----------VEMPTRSKLSCLSWNKFS--KNRIASSDYEGIVTVWDVTTQQSV 461 (495)
Q Consensus 405 ~~~-~-~~~~~~~~~~~-----------~~~~~~~~i~~~~~~p~~--~~~l~sg~~dg~v~iwd~~~~~~~ 461 (495)
-+. | ...+.+.+..+ +.....-.+..++|||++ ...|..-+.|.+|+|||....+.+
T Consensus 132 p~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 132 PKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred hhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 221 1 01111111111 111122246788999995 577888888999999998765444
No 457
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.64 E-value=2.8 Score=38.38 Aligned_cols=83 Identities=8% Similarity=-0.080 Sum_probs=53.4
Q ss_pred CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCe-EEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc
Q 048199 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKL-SCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE 465 (495)
Q Consensus 387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~ 465 (495)
-|++++.|...+.+.+.++.++ ...-.+...+.| ......++ +..|+.|+.|+.....|.++..++...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tG--------s~~w~f~~~~~vk~~a~~d~~-~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTG--------SQIWNFVILETVKVRAQCDFD-GGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ECCEEEEEEccCcEEEEEecch--------hheeeeeehhhhccceEEcCC-CceEEEecCCCcEEEecccccceEEecc
Confidence 4778899999999999999987 111111111111 12223555 7899999999999999999888877655
Q ss_pred cccCcEEEEEeec
Q 048199 466 EHEKRAWSVDFSR 478 (495)
Q Consensus 466 ~h~~~v~~v~~~~ 478 (495)
--.+.-.+-+..|
T Consensus 133 cgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 133 CGGGTFVSPVIAP 145 (354)
T ss_pred cCCceeccceecC
Confidence 3322222334444
No 458
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.57 E-value=0.91 Score=29.05 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=26.8
Q ss_pred CcEEEEEEccC-C--CEEEEEeCCCcEEEEEcccc
Q 048199 377 NIVSSIEFDRD-D--QLFATAGVSRRIKVFDFASV 408 (495)
Q Consensus 377 ~~V~~l~~~p~-~--~~l~s~s~d~~i~vwd~~~~ 408 (495)
+.|+++.|+|. + .+|+-+-.-+.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 3 58888888899999999964
No 459
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.36 E-value=6.4 Score=37.67 Aligned_cols=105 Identities=8% Similarity=0.112 Sum_probs=57.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
.+.+.++..+++|.+++.++.-.-..-||--.. .-..........|.++.|.|+ +.+.+.+ ..|.|++=|.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-------~w~~~~r~~~~riq~~gf~~~-~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-------TWQPHNRNSSRRIQSMGFSPD-GNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-------S-EEEE--SSS-EEEEEE-TT-S-EEEEE-TTTEEEEEE-
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc-------cceEEccCccceehhceecCC-CCEEEEe-CCcEEEEccC
Confidence 567888888999999988876666667775432 122233344567999999999 7666655 7788888772
Q ss_pred -CCCcc----eeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 456 -TTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 456 -~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
..... +..+....-.+..++|.+ +....++|+..
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~G 253 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGSG 253 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEESTT
T ss_pred CCCccccccccCCcccCceeeEEEEecC-CCCEEEEeCCc
Confidence 21211 111222233478899998 76677766543
No 460
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.28 E-value=2.4 Score=44.25 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=54.9
Q ss_pred cEEEEEEccCCCEEEE-EeCCCcEEEEEccccccCCC----CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 378 IVSSIEFDRDDQLFAT-AGVSRRIKVFDFASVVNEPA----DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s-~s~d~~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
....+.++|||++++. +..+.+|.|.|+......+. .....+....-.-.....+|.++ |+.+.|--.|..|-.
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf~dsqv~k 400 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLFLDSQIVK 400 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEeecceeEE
Confidence 4568999999997665 45699999999988632111 11112222222334567889998 788888889999999
Q ss_pred EeCCC
Q 048199 453 WDVTT 457 (495)
Q Consensus 453 wd~~~ 457 (495)
||+.+
T Consensus 401 wn~~~ 405 (635)
T PRK02888 401 WNIEA 405 (635)
T ss_pred EehHH
Confidence 99865
No 461
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.21 E-value=5.4 Score=37.89 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=65.6
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCc-------EEEEEccccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEecC
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRR-------IKVFDFASVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDY 446 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~-------i~vwd~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~ 446 (495)
|.-.|+-++++++|..++..-..+- |-+++-...... ...+.. .....+.+-+|++++++..+.+|+-.
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~---~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRL---LPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCccee---ccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 6678899999988877765543332 222222221000 001100 11233568899999993334466667
Q ss_pred CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
.+.+.+||..++..+....- ..+..|+-.+ ++ +++|.+.-.
T Consensus 238 Gg~~~~~d~~tg~~~~~~~l--~D~cGva~~~-~~-f~~ssG~G~ 278 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVPL--PDACGVAPTD-DG-FLVSSGQGQ 278 (305)
T ss_pred CCEEEEEECCCCCEeecccc--CceeeeeecC-Cc-eEEeCCCcc
Confidence 78999999999998776652 3466777665 54 666655443
No 462
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.06 E-value=3.4 Score=43.14 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=44.7
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc------------eeecccccCcEEEEEeecCCCCeEEE
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS------------VMEYEEHEKRAWSVDFSRTEPSMLVS 486 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~------------~~~~~~h~~~v~~v~~~~~~g~~l~s 486 (495)
+..+.-....+.+.++||+..+++++..+.+|.|.|+.+... +....- ...-...+|.+ +|+...|
T Consensus 314 ~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~ayts 391 (635)
T PRK02888 314 TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTT 391 (635)
T ss_pred EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEe
Confidence 334445566789999999444556667799999999987542 222221 12234567877 7765555
Q ss_pred eeCCCc
Q 048199 487 GSDDCK 492 (495)
Q Consensus 487 ~s~D~~ 492 (495)
---|..
T Consensus 392 lf~dsq 397 (635)
T PRK02888 392 LFLDSQ 397 (635)
T ss_pred Eeecce
Confidence 544544
No 463
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=89.55 E-value=1.5 Score=44.32 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=57.7
Q ss_pred cEEEEEEccCCCEEE-EEeCCCcEEEE--EccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE-
Q 048199 378 IVSSIEFDRDDQLFA-TAGVSRRIKVF--DFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW- 453 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~-s~s~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw- 453 (495)
.-..-.|+|||+.|+ +...|+...|| |+... .........+.-..=.|+||+..++++.+..|.-.||
T Consensus 239 ~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~--------~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~ 310 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK--------NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYL 310 (425)
T ss_pred ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC--------cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence 334567999999666 55567776555 44443 1111111122223557999955556666677764544
Q ss_pred -eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 454 -DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 454 -d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
|...+. +..+....+.-..-.|+| ||.+|+..+.
T Consensus 311 ~~~~g~~-~~riT~~~~~~~~p~~Sp-dG~~i~~~~~ 345 (425)
T COG0823 311 YDLEGSQ-VTRLTFSGGGNSNPVWSP-DGDKIVFESS 345 (425)
T ss_pred ECCCCCc-eeEeeccCCCCcCccCCC-CCCEEEEEec
Confidence 554333 333333332223667899 9998887774
No 464
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=89.16 E-value=2.7 Score=41.78 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=55.7
Q ss_pred CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199 388 DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH 467 (495)
Q Consensus 388 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h 467 (495)
+..++.++.++.+..||..++... -.... ........ + +..++.++.||.|..+|..+|+.+-.+...
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~--------W~~~~-~~~~~p~~--~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~ 308 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVL--------WKRDA-SSYQGPAV--D-DNRLYVTDADGVVVALDRRSGSELWKNDEL 308 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEE--------Eeecc-CCccCceE--e-CCEEEEECCCCeEEEEECCCCcEEEccccc
Confidence 456777888999999999887211 11111 11112222 2 567888889999999999999876555321
Q ss_pred cCc-EEEEEeecCCCCeEEEeeCCCcEe
Q 048199 468 EKR-AWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 468 ~~~-v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
... ..+... .+..|+.++.||.|+
T Consensus 309 ~~~~~ssp~i---~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 309 KYRQLTAPAV---VGGYLVVGDFEGYLH 333 (377)
T ss_pred cCCccccCEE---ECCEEEEEeCCCEEE
Confidence 111 122222 345777788887765
No 465
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.09 E-value=4.2 Score=42.83 Aligned_cols=102 Identities=11% Similarity=0.116 Sum_probs=63.1
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEE--cCCCCCEEEEecCCCcEEEEeCC
Q 048199 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW--NKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
..-+.-+..++..+..+...++.|||...+.- .....+...+.|..++| .|+ ++.+++-+....|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l------E~~~~f~~~~~I~dLDWtst~d-~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVL------EYEESFSEDDPIRDLDWTSTPD-GQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEE------EEeeeecCCCceeeceeeecCC-CCEEEEEEcCcEEEEEEcc
Confidence 33444444555555555567899999988621 11122245678999999 466 6777777788899888531
Q ss_pred -----C-C---cceee--ccccc-CcEEEEEeecCCCCeEEEee
Q 048199 457 -----T-Q---QSVME--YEEHE-KRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 457 -----~-~---~~~~~--~~~h~-~~v~~v~~~~~~g~~l~s~s 488 (495)
. + ..+.. +..|+ .+|.+..|.+ +|.+++.++
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG 147 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG 147 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC
Confidence 1 1 12222 23444 6799999998 886655443
No 466
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.48 E-value=2.4 Score=42.64 Aligned_cols=92 Identities=11% Similarity=0.130 Sum_probs=59.3
Q ss_pred EEeCCCcEEEEEcccccc-CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcce-eecccccCc
Q 048199 393 TAGVSRRIKVFDFASVVN-EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV-MEYEEHEKR 470 (495)
Q Consensus 393 s~s~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~-~~~~~h~~~ 470 (495)
.|-.|..|.-||.+-.-. .+. ...-..+.......|.+-.. ..+|+.|+.+|.|++||- .+... ..|.+-..+
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~--~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~ 473 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLA--VVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDA 473 (644)
T ss_pred EeecCCceEEecccccCcceee--eeeccccccccccceeeecC--CceEEEeecCCcEEeehh-hhhhhhhcccccCCc
Confidence 455688899999885411 000 00001112223344555444 348999999999999996 55443 446677889
Q ss_pred EEEEEeecCCCCeEEEeeCC
Q 048199 471 AWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 471 v~~v~~~~~~g~~l~s~s~D 490 (495)
|..|..+. +|.+|+..+..
T Consensus 474 I~hVdvta-dGKwil~Tc~t 492 (644)
T KOG2395|consen 474 IKHVDVTA-DGKWILATCKT 492 (644)
T ss_pred eeeEEeec-cCcEEEEeccc
Confidence 99999998 99988777654
No 467
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=88.29 E-value=6.3 Score=36.28 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048199 193 HYIKEDINAVERHRIDLYRA 212 (495)
Q Consensus 193 ~~l~~~i~~l~~~~~~l~~~ 212 (495)
++.+.+|++|++-++.++..
T Consensus 120 KEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444433
No 468
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.25 E-value=0.44 Score=33.63 Aligned_cols=39 Identities=28% Similarity=0.581 Sum_probs=28.5
Q ss_pred ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHH
Q 048199 67 LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLL 107 (495)
Q Consensus 67 ~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l 107 (495)
+..=-|+||..|.+..+ ...||.|+-.+..+.++|.-.+
T Consensus 24 ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 24 ICTFECTFCADCAENRL--HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EEEEeeehhHhHHHHhh--cCcCCCCCchhhcCcCChHHHH
Confidence 33346799999999765 3689999998877666664433
No 469
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=87.98 E-value=6.1 Score=39.40 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=69.2
Q ss_pred EEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---CCcEEEEe
Q 048199 379 VSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---EGIVTVWD 454 (495)
Q Consensus 379 V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---dg~v~iwd 454 (495)
-..+++++.+. .+++...+..|.+.|..+. .......-......++|+|+ +..++.+.. ++++.+.|
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--------~~~~~~~vG~~P~~~~~~~~-~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATN--------TVLGSIPVGLGPVGLAVDPD-GKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCccc--------ceeeEeeeccCCceEEECCC-CCEEEEEecccCCceEEEEe
Confidence 34677888777 5556666799999996664 22222222225678999999 545544444 68999999
Q ss_pred CCCCcceeecccccCcEEEEEeecCCCCeEEEee-CCCcEe
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS-DDCKVL 494 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s-~D~~v~ 494 (495)
..++........-..+ ..+++.| +|..++.+. .++.|.
T Consensus 147 ~~t~~~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 147 AATNKVTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVS 185 (381)
T ss_pred CCCCeEEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEE
Confidence 9888877774433334 8899999 888555444 555553
No 470
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.96 E-value=7.9 Score=35.04 Aligned_cols=107 Identities=13% Similarity=0.192 Sum_probs=66.0
Q ss_pred EEEEEEccCCCE-EEEEeCCCcEEEEEccccccCCCCcCCCeeecCC----CC-CeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 379 VSSIEFDRDDQL-FATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT----RS-KLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 379 V~~l~~~p~~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----~~-~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
-..++|+-+.+. .+.-+.+-+|.-||.+-....+.. ...+..+.. .. -.-.+++..+ |+++++.-..|+|..
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-r~~i~dlrk~~~~e~~~PDGm~ID~e-G~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-RKVIFDLRKSQPFESLEPDGMTIDTE-GNLYVATFNGGTVQK 237 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccC-cceeEEeccCCCcCCCCCCcceEccC-CcEEEEEecCcEEEE
Confidence 356788876554 446778888988985432111100 001111110 00 1123344555 778887777889999
Q ss_pred EeCCCCcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
+|..+|+.+..+.-.+..|++++|--.+-..|++.
T Consensus 238 ~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred ECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 99999999999987889999999974243455444
No 471
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.54 E-value=1.4 Score=43.42 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=50.9
Q ss_pred CCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee-eccc-------c
Q 048199 397 SRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM-EYEE-------H 467 (495)
Q Consensus 397 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~-~~~~-------h 467 (495)
.+.+.|||+.++ . ...+. ....+....|+|+ +..++-.. ++.|.+++..++...+ +..| -
T Consensus 22 ~~~y~i~d~~~~--------~-~~~l~~~~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~ 90 (353)
T PF00930_consen 22 KGDYYIYDIETG--------E-ITPLTPPPPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGV 90 (353)
T ss_dssp EEEEEEEETTTT--------E-EEESS-EETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB
T ss_pred ceeEEEEecCCC--------c-eEECcCCccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCc
Confidence 456888999886 1 11111 1456788999999 88777775 5789999987664321 1112 0
Q ss_pred ---------cCcEEEEEeecCCCCeEEEeeCC
Q 048199 468 ---------EKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 468 ---------~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
-+.-..+-|+| |+.+|+....|
T Consensus 91 ~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d 121 (353)
T PF00930_consen 91 PDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFD 121 (353)
T ss_dssp --HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE
T ss_pred cceeccccccccccceEECC-CCCEEEEEEEC
Confidence 11235677999 99999877654
No 472
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=87.19 E-value=0.29 Score=46.45 Aligned_cols=44 Identities=20% Similarity=0.482 Sum_probs=34.3
Q ss_pred ccccccccchhhhccccC----CC--CccchhhHHhhhcCCCCCCCCCCc
Q 048199 52 DMLCPICMQIIKEAFLTA----CG--HSFCYMCIITHLRNKSDCPCCGHY 95 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l~----CG--H~FC~~Ci~~~~~~~~~CP~Cr~~ 95 (495)
.-.||||+....--++.. =| |.+|..|-..|--....||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 448999999986654432 33 677999999998777899999974
No 473
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=86.96 E-value=5.2 Score=40.06 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=58.4
Q ss_pred CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE 466 (495)
Q Consensus 387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~ 466 (495)
.+..++.++.++.+..+|..++..... ... .. .....+.... +..|+.++.||.|.++|..+|+.+..+.-
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~---~~~--~~-~~~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWS---QSD--LL-HRLLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEc---ccc--cC-CCcccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 355666777889999999887621110 000 00 0111122222 45788899999999999999998877654
Q ss_pred ccCcEEE-EEeecCCCCeEEEeeCCCcEe
Q 048199 467 HEKRAWS-VDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 467 h~~~v~~-v~~~~~~g~~l~s~s~D~~v~ 494 (495)
....+.+ ..+. + ..|+.++.||.|.
T Consensus 364 ~~~~~~s~P~~~--~-~~l~v~t~~G~l~ 389 (394)
T PRK11138 364 DSSGFLSEPVVA--D-DKLLIQARDGTVY 389 (394)
T ss_pred CCCcceeCCEEE--C-CEEEEEeCCceEE
Confidence 3333332 2222 3 4788889999875
No 474
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=86.75 E-value=0.32 Score=44.00 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=35.8
Q ss_pred ccccccccchhhhccc-cCCCCccchhhHHhhhcCC--CCCCCCC
Q 048199 52 DMLCPICMQIIKEAFL-TACGHSFCYMCIITHLRNK--SDCPCCG 93 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~-l~CGH~FC~~Ci~~~~~~~--~~CP~Cr 93 (495)
.+.|||-+..+.+|++ ..|||+|-+.=|..++... -.||+=+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 5789999999999984 5899999999999998774 4799743
No 475
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=86.73 E-value=17 Score=33.65 Aligned_cols=106 Identities=9% Similarity=0.144 Sum_probs=60.3
Q ss_pred cCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
+-...+++|+|+|+ +.+++.....+.|..++.... ......+...+..-.|++..+ +.++++.-.++.+.+
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~-------vlr~i~l~g~~D~EgI~y~g~-~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK-------VLRRIPLDGFGDYEGITYLGN-GRYVLSEERDQRLYI 90 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS-SSEEEEEE-ST-TEEEEEETTTTEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC-------EEEEEeCCCCCCceeEEEECC-CEEEEEEcCCCcEEE
Confidence 44556999999996 457777777888877776532 111122334456788888766 666666666889999
Q ss_pred EeCCCCc------ceeecc-----cccCcEEEEEeecCCCCeEEEee
Q 048199 453 WDVTTQQ------SVMEYE-----EHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 453 wd~~~~~------~~~~~~-----~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
+++.... .+..+. .+...+-+++|.+ .+..|+.+-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~k 136 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAK 136 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEE
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEe
Confidence 9884321 111121 2455688999999 555555443
No 476
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=86.54 E-value=3.2 Score=44.95 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=64.7
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
+....|.+++.+..||..- .....++. . +..........+++-..+| +||.|+.+|.||+||--.. ...
T Consensus 543 e~tflGls~n~lfriDpR~-~~~k~v~~-~-~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~-------~AK 611 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRL-SGNKLVDS-Q-SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGK-------RAK 611 (794)
T ss_pred CceEEEECCCceEEeccCC-CCCceeec-c-ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccch-------hhh
Confidence 3445688888999999742 22222221 1 1111234456666554444 7789999999999994321 122
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
...-+-..+|..|+.+.| |.+|+..+ +..+.++|.
T Consensus 612 T~lp~lG~pI~~iDvt~D-GkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 612 TALPGLGDPIIGIDVTAD-GKWILATC-KTYLLLIDT 646 (794)
T ss_pred hcCCCCCCCeeEEEecCC-CcEEEEee-cceEEEEEE
Confidence 222245679999999999 77766555 467778875
No 477
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=0.94 Score=49.20 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=62.2
Q ss_pred ccCCCCccccccccchhhhccccC-CCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 46 VSELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l~-CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
+.+..++..=||=..+..|||.+| -|++-|+.=|.+++-...+-|.||.+++.+.+.+|-.+...++.+..
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ 935 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIK 935 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHH
Confidence 345666777788888999999998 99999999999999999999999999999999999988887776644
No 478
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=86.21 E-value=0.26 Score=26.93 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=12.1
Q ss_pred cchhhHHhhhcCCCCCCCCCCc
Q 048199 74 FCYMCIITHLRNKSDCPCCGHY 95 (495)
Q Consensus 74 FC~~Ci~~~~~~~~~CP~Cr~~ 95 (495)
||..|=.+.-.....||.|+.+
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 4445544544445567777655
No 479
>PRK02224 chromosome segregation protein; Provisional
Probab=86.14 E-value=16 Score=40.97 Aligned_cols=16 Identities=25% Similarity=0.702 Sum_probs=12.8
Q ss_pred CCCCCCCCCcCccCCC
Q 048199 86 KSDCPCCGHYLTNNQL 101 (495)
Q Consensus 86 ~~~CP~Cr~~~~~~~l 101 (495)
...||+|++++...+.
T Consensus 451 ~~~Cp~C~r~~~~~~~ 466 (880)
T PRK02224 451 AGKCPECGQPVEGSPH 466 (880)
T ss_pred cccCCCCCCcCCCcch
Confidence 4689999999876554
No 480
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=86.13 E-value=0.22 Score=47.51 Aligned_cols=44 Identities=23% Similarity=0.476 Sum_probs=23.7
Q ss_pred ccccccccchhhhccccCC-----CCccchhhHHhhhcCCCCCCCCCCc
Q 048199 52 DMLCPICMQIIKEAFLTAC-----GHSFCYMCIITHLRNKSDCPCCGHY 95 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l~C-----GH~FC~~Ci~~~~~~~~~CP~Cr~~ 95 (495)
.-.||||+..+.--++..= -|.+|..|-..|--....||.|+..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 4589999999876655433 3778999999998777899999875
No 481
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.06 E-value=23 Score=32.36 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 166 NMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHR 206 (495)
Q Consensus 166 ~~~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~ 206 (495)
++...++.|..++....++|+++.+.+..|+..|.+.+...
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445444444444444444444333
No 482
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.04 E-value=4.3 Score=36.94 Aligned_cols=72 Identities=8% Similarity=0.086 Sum_probs=49.7
Q ss_pred EccCCCEEEEEeCCCcEEEEEccccccCCCC-cCCCeeec------CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 384 FDRDDQLFATAGVSRRIKVFDFASVVNEPAD-VHCPVVEM------PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 384 ~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~~~------~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
+...+++|+.-..+|.+++||+.+....+.. ...++... .....|..+.++.+ |..|++-+ +|....||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~-G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN-GVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC-CCEEEEEe-CCCEEEeccc
Confidence 3447888999999999999999987433322 11122211 34557889999977 77777665 6888999875
Q ss_pred C
Q 048199 457 T 457 (495)
Q Consensus 457 ~ 457 (495)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 3
No 483
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=85.91 E-value=0.65 Score=51.78 Aligned_cols=46 Identities=28% Similarity=0.630 Sum_probs=33.1
Q ss_pred ccccccccchhh--hcc-ccCCCCccchhhHHhhhcCC----------CCCCCCCCcCc
Q 048199 52 DMLCPICMQIIK--EAF-LTACGHSFCYMCIITHLRNK----------SDCPCCGHYLT 97 (495)
Q Consensus 52 ~l~C~IC~~~~~--~Pv-~l~CGH~FC~~Ci~~~~~~~----------~~CP~Cr~~~~ 97 (495)
+-.|-||+..-- .|. .|.|||.|...|..+.+++. ..||.|..++.
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 346888875432 354 67999999999987666543 28999988763
No 484
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=85.79 E-value=0.44 Score=31.39 Aligned_cols=38 Identities=24% Similarity=0.691 Sum_probs=24.4
Q ss_pred cccccchhhh--ccccCCCC-----ccchhhHHhhhcCC--CCCCCC
Q 048199 55 CPICMQIIKE--AFLTACGH-----SFCYMCIITHLRNK--SDCPCC 92 (495)
Q Consensus 55 C~IC~~~~~~--Pv~l~CGH-----~FC~~Ci~~~~~~~--~~CP~C 92 (495)
|-||++.-.+ |.+.||+= ...+.|+.+|+... .+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6788888764 45667632 34688999999853 579887
No 485
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.49 E-value=3.8 Score=41.62 Aligned_cols=87 Identities=10% Similarity=0.134 Sum_probs=50.7
Q ss_pred CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC---------
Q 048199 388 DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ--------- 458 (495)
Q Consensus 388 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~--------- 458 (495)
|.+|+..+.+ .|.+||+.++ ..+..+... +|..+.|+++ +.+++-.+. .++.|++....
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~--------~~i~~i~v~-~vk~V~Ws~~-g~~val~t~-~~i~il~~~~~~~~~~~~~g 184 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETG--------KLIRRIDVS-AVKYVIWSDD-GELVALVTK-DSIYILKYNLEAVAAIPEEG 184 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT----------EEEEESS--E-EEEEE-TT-SSEEEEE-S--SEEEEEE-HHHHHHBTTTB
T ss_pred CcEEEEECCC-CEEEEEhhHc--------ceeeEEecC-CCcEEEEECC-CCEEEEEeC-CeEEEEEecchhcccccccC
Confidence 8877777654 8999999986 445555443 3889999999 888888774 47778775422
Q ss_pred --cceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 459 --QSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 459 --~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
..+..+..-...|.+.+|.. + -++.|..
T Consensus 185 ~e~~f~~~~E~~~~IkSg~W~~-d-~fiYtT~ 214 (443)
T PF04053_consen 185 VEDAFELIHEISERIKSGCWVE-D-CFIYTTS 214 (443)
T ss_dssp -GGGEEEEEEE-S--SEEEEET-T-EEEEE-T
T ss_pred chhceEEEEEecceeEEEEEEc-C-EEEEEcC
Confidence 13444444356788888876 4 4555543
No 486
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=85.47 E-value=0.47 Score=52.14 Aligned_cols=45 Identities=24% Similarity=0.645 Sum_probs=34.1
Q ss_pred cccccccchhh-----hccc-c-CCCCccchhhHHhh-hcCCCCCCCCCCcCc
Q 048199 53 MLCPICMQIIK-----EAFL-T-ACGHSFCYMCIITH-LRNKSDCPCCGHYLT 97 (495)
Q Consensus 53 l~C~IC~~~~~-----~Pv~-l-~CGH~FC~~Ci~~~-~~~~~~CP~Cr~~~~ 97 (495)
-.|.||++..- +|.+ . .||---|+.|.+-= -+.++.||+|+.++.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 37999999874 4542 2 69999999999632 234579999998876
No 487
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=85.06 E-value=0.52 Score=32.12 Aligned_cols=37 Identities=27% Similarity=0.581 Sum_probs=25.1
Q ss_pred ccccccccchhhhccccCCCCccchhhHHhhhcC--CCCCCCCCCc
Q 048199 52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN--KSDCPCCGHY 95 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~--~~~CP~Cr~~ 95 (495)
.+.||.|.+.|... .++.-|...+... ...||+|...
T Consensus 2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 57899999966643 2455566665543 2579999864
No 488
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.99 E-value=0.75 Score=49.02 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=69.4
Q ss_pred cCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCC--CCCEEEEecCCCc
Q 048199 374 HSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKF--SKNRIASSDYEGI 449 (495)
Q Consensus 374 ~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~--~~~~l~sg~~dg~ 449 (495)
|-.+.|-+|.|-. +...+. -.-|...|||++--...+... -.+... .....+.-+.|-|. +..++-.+..++.
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~-l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQ-LEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccc-eEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 4467788888843 333333 334678899987531111100 001111 12222334444433 2567888888999
Q ss_pred EEEEeCCCCcceeecccccCcEEEEE-----------eecCCCCeEEEeeCCCcEeC
Q 048199 450 VTVWDVTTQQSVMEYEEHEKRAWSVD-----------FSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~~h~~~v~~v~-----------~~~~~g~~l~s~s~D~~v~l 495 (495)
|++.++.+.. ...|.+|..++..++ .+| ||+.++.++.||.|+.
T Consensus 207 i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 207 IRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGF 261 (1283)
T ss_pred eeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccce
Confidence 8887776433 256677877776654 478 9999999999998863
No 489
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=84.89 E-value=6.8 Score=27.97 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=26.2
Q ss_pred CchhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 048199 124 SPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQ 160 (495)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 160 (495)
..++.+...+|.+|+..+.+...+.+.+...+++|..
T Consensus 4 ~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 4 TSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677888888887777777777777666653
No 490
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.78 E-value=20 Score=36.42 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=39.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-CCCcCCCeeecCCCCCeEEEEEcCC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-PADVHCPVVEMPTRSKLSCLSWNKF 436 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~p~ 436 (495)
-..-++|+|.|++++|++--..|.|++++....... .... ..+........+..++|+|+
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l-~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTL-PEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecC-CceeccCCCCceeeEEECCC
Confidence 455789999999998888765799999986554111 1111 01111123677899999987
No 491
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.67 E-value=12 Score=40.57 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=53.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccc--ccc-CCCCcCCCee-----------ecCCCCCeEEEEEcCCC--CCE
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFAS--VVN-EPADVHCPVV-----------EMPTRSKLSCLSWNKFS--KNR 440 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~--~~~-~~~~~~~~~~-----------~~~~~~~i~~~~~~p~~--~~~ 440 (495)
-.|..|.++|+|.+++..|.. .|.|-.+.. +.. .+.+....+. .......|..+.|||.+ +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~-~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPR-GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCC-cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 368899999999999988864 456655542 111 1111111111 11234468999999983 578
Q ss_pred EEEecCCCcEEEEeCCC
Q 048199 441 IASSDYEGIVTVWDVTT 457 (495)
Q Consensus 441 l~sg~~dg~v~iwd~~~ 457 (495)
|+.-..|+++++||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 88999999999999965
No 492
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=0.43 Score=48.59 Aligned_cols=37 Identities=32% Similarity=0.676 Sum_probs=31.3
Q ss_pred CCccccccccchhhh-ccccCCCCccchhhHHhhhcCC
Q 048199 50 DKDMLCPICMQIIKE-AFLTACGHSFCYMCIITHLRNK 86 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~-Pv~l~CGH~FC~~Ci~~~~~~~ 86 (495)
.....|.||.+.+.. ...+.|||.||..|+..|+...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhhe
Confidence 345789999999986 5677999999999999998763
No 493
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=84.23 E-value=0.95 Score=40.53 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=36.6
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV 408 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~ 408 (495)
..++-|..+..+.+|....|+... .+... +-......|.--.++.+..+++.|+.||.|++...
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~---d~~~s---~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHS---DRVCS---GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred ceEEeecccceEEEecCCccchHH---Hhhhc---ccccceeccccccccceeEEeccCCceeeeccccC
Confidence 345567777777777764332211 11100 11122222222335668889999999999999876
No 494
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=83.82 E-value=18 Score=33.64 Aligned_cols=99 Identities=18% Similarity=0.053 Sum_probs=60.4
Q ss_pred cEEEEEEccCCCEEEEEe---CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 378 IVSSIEFDRDDQLFATAG---VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s~s---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
.+.+.++++++..++... ....+.++..... .........+..-.|+++ +..++....+...+++-
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----------~~~~~~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----------VRPVLTGGSLTRPSWDPD-GWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----------ceeeccCCccccccccCC-CCEEEEEcCCCceEEEE
Confidence 688999999999776554 3344444444332 111112236777899999 77777777677777773
Q ss_pred -CCCCccee-ec--ccccCcEEEEEeecCCCCeEEEee
Q 048199 455 -VTTQQSVM-EY--EEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 455 -~~~~~~~~-~~--~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
...+.... .. .+-...|..+.++| ||..++--.
T Consensus 94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~ 130 (253)
T PF10647_consen 94 DSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVV 130 (253)
T ss_pred ecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEE
Confidence 33332211 11 11122899999999 998776555
No 495
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.75 E-value=0.52 Score=49.19 Aligned_cols=47 Identities=11% Similarity=0.226 Sum_probs=35.3
Q ss_pred Cccccccccchhhhcc----ccC---CCCccchhhHHhhhcCC------CCCCCCCCcCc
Q 048199 51 KDMLCPICMQIIKEAF----LTA---CGHSFCYMCIITHLRNK------SDCPCCGHYLT 97 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv----~l~---CGH~FC~~Ci~~~~~~~------~~CP~Cr~~~~ 97 (495)
+..+|.||.-.+.+|+ +++ |+|.||..||..|...- -.|++|..-+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3467888888888864 455 99999999999997642 25888876543
No 496
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.72 E-value=7.1 Score=41.62 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=71.7
Q ss_pred EEEEEEcc--CCCEEEEEeCCCcEEEEEcccccc---CC---------CCcCCCeeecCCCCCeEEEEEc--CCCCCEEE
Q 048199 379 VSSIEFDR--DDQLFATAGVSRRIKVFDFASVVN---EP---------ADVHCPVVEMPTRSKLSCLSWN--KFSKNRIA 442 (495)
Q Consensus 379 V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~---~~---------~~~~~~~~~~~~~~~i~~~~~~--p~~~~~l~ 442 (495)
|.-|.... +...|+.|..||.|.+|.+..-.. .. .....|...+.....+|+++++ .. ..+||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-SRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-ceEEE
Confidence 44444443 456888999999999998854310 00 0111233444455689999998 66 77888
Q ss_pred EecCCCcEEEEeCCCC--c-ceeecccccCcEEEEEeecCC----CC-eEEEeeCCCcEe
Q 048199 443 SSDYEGIVTVWDVTTQ--Q-SVMEYEEHEKRAWSVDFSRTE----PS-MLVSGSDDCKVL 494 (495)
Q Consensus 443 sg~~dg~v~iwd~~~~--~-~~~~~~~h~~~v~~v~~~~~~----g~-~l~s~s~D~~v~ 494 (495)
.++....|.||-.... + ....-..|...|.+|+|-+.+ |. +|++++-.|.|-
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~ 241 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVW 241 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEE
Confidence 8888888888865431 1 111111256679999998632 22 677777777653
No 497
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.30 E-value=34 Score=30.72 Aligned_cols=23 Identities=4% Similarity=0.108 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048199 188 IQTDLHYIKEDINAVERHRIDLY 210 (495)
Q Consensus 188 ~~~~~~~l~~~i~~l~~~~~~l~ 210 (495)
++.+.+.|.+++..++.++..++
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443333
No 498
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=83.16 E-value=1.1 Score=30.15 Aligned_cols=26 Identities=38% Similarity=0.781 Sum_probs=21.2
Q ss_pred CccchhhHHhhhcCCCCCCCCCCcCccC
Q 048199 72 HSFCYMCIITHLRNKSDCPCCGHYLTNN 99 (495)
Q Consensus 72 H~FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 99 (495)
-+||..|.+..+ ...||.|+-.+..+
T Consensus 29 CTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 29 CTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CcccHHHHHHHh--cCcCcCCCCccccC
Confidence 479999999987 46899999887653
No 499
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.11 E-value=7.3 Score=38.00 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=56.3
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccccc-cCCCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEEecCC-------
Q 048199 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVV-NEPADVHCPVVEMPTRSKLSCLSWNKF---SKNRIASSDYE------- 447 (495)
Q Consensus 379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~sg~~d------- 447 (495)
-++|+|.|+|.+|++- ..|.|++++..... ..+... +.........+..++|+|+ ++.++++.+..
T Consensus 4 P~~~a~~pdG~l~v~e-~~G~i~~~~~~g~~~~~v~~~--~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAE-RSGRIWVVDKDGSLKTPVADL--PEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEEEE-TTTEEEEEETTTEECEEEEE---TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEEEe-CCceEEEEeCCCcCcceeccc--ccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 5799999999888765 49999999933321 000000 0112234557899999994 23333333311
Q ss_pred -CcEEEEeCCCC-------cce-eeccc---ccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 448 -GIVTVWDVTTQ-------QSV-MEYEE---HEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 448 -g~v~iwd~~~~-------~~~-~~~~~---h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
..|.-|....+ +.+ ..+.. .......|.|.| ||.+.++.++.+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCC
Confidence 12333333222 111 11111 234566799999 997777766543
No 500
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.07 E-value=0.16 Score=48.46 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=39.4
Q ss_pred ccccccchhhhc----cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 54 LCPICMQIIKEA----FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 54 ~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
.|.||++-++.- ..+.|||.+...||++|+....+||.|++.+..
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 599999999865 367899999999999999988899999988754
Done!