Query 048199
Match_columns 495
No_of_seqs 492 out of 4992
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 12:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 99.8 8.4E-21 2.9E-25 184.0 15.2 144 335-495 173-316 (321)
2 4gqb_B Methylosome protein 50; 99.8 1.5E-20 5.3E-25 183.9 15.1 144 335-495 136-284 (344)
3 1got_B GT-beta; complex (GTP-b 99.8 2.5E-20 8.4E-25 182.1 15.4 142 336-495 194-338 (340)
4 2ynn_A Coatomer subunit beta'; 99.8 3.3E-20 1.1E-24 178.3 14.6 145 335-495 22-167 (304)
5 4gqb_B Methylosome protein 50; 99.8 6.5E-20 2.2E-24 179.4 16.0 152 333-495 88-241 (344)
6 1vyh_C Platelet-activating fac 99.8 4.6E-20 1.6E-24 185.1 13.6 144 335-495 117-260 (410)
7 2hes_X YDR267CP; beta-propelle 99.8 1.1E-19 3.7E-24 176.8 15.2 151 339-495 25-179 (330)
8 2pbi_B Guanine nucleotide-bind 99.8 1.4E-19 4.7E-24 177.9 15.6 140 338-495 210-352 (354)
9 2ynn_A Coatomer subunit beta'; 99.8 3.4E-19 1.2E-23 171.2 16.8 147 335-495 106-254 (304)
10 3fm0_A Protein CIAO1; WDR39,SG 99.8 1.3E-19 4.4E-24 177.4 14.0 150 334-495 24-176 (345)
11 3ow8_A WD repeat-containing pr 99.8 1.9E-19 6.6E-24 174.3 15.1 143 335-495 131-274 (321)
12 2hes_X YDR267CP; beta-propelle 99.8 1.7E-19 5.8E-24 175.4 14.4 151 335-495 67-225 (330)
13 3fm0_A Protein CIAO1; WDR39,SG 99.8 1.5E-19 5.3E-24 176.8 14.1 149 335-495 70-220 (345)
14 3iz6_a 40S ribosomal protein R 99.8 1.1E-19 3.9E-24 180.3 12.2 150 337-495 217-370 (380)
15 3frx_A Guanine nucleotide-bind 99.8 4.8E-19 1.6E-23 171.3 16.1 144 335-495 74-222 (319)
16 1vyh_C Platelet-activating fac 99.8 2.5E-19 8.6E-24 179.7 14.4 143 336-495 244-406 (410)
17 2pm7_B Protein transport prote 99.8 5.9E-19 2E-23 168.9 15.3 160 324-495 50-233 (297)
18 1got_B GT-beta; complex (GTP-b 99.8 8E-19 2.7E-23 171.3 16.3 148 331-495 147-296 (340)
19 4ery_A WD repeat-containing pr 99.8 9.5E-19 3.2E-23 168.4 16.2 144 335-495 32-175 (312)
20 1erj_A Transcriptional repress 99.8 1E-18 3.4E-23 174.2 15.8 144 335-495 132-282 (393)
21 4g56_B MGC81050 protein; prote 99.8 7.3E-19 2.5E-23 172.9 14.1 143 339-495 195-338 (357)
22 2j04_B YDR362CP, TAU91; beta p 99.8 1.9E-19 6.4E-24 185.6 10.2 148 332-495 271-423 (524)
23 4g56_B MGC81050 protein; prote 99.8 9.9E-19 3.4E-23 172.0 15.0 148 335-495 148-296 (357)
24 1nr0_A Actin interacting prote 99.8 1.6E-18 5.4E-23 183.0 17.1 146 340-495 162-350 (611)
25 3frx_A Guanine nucleotide-bind 99.8 1.7E-18 5.9E-23 167.5 15.6 158 324-495 14-180 (319)
26 2pbi_B Guanine nucleotide-bind 99.8 2.3E-18 7.9E-23 169.1 16.1 153 335-495 73-266 (354)
27 2kr4_A Ubiquitin conjugation f 99.8 1.1E-19 3.9E-24 137.6 5.0 73 44-116 6-78 (85)
28 2xzm_R RACK1; ribosome, transl 99.8 2.5E-18 8.4E-23 168.1 15.6 145 336-495 86-239 (343)
29 4h5i_A Guanine nucleotide-exch 99.8 1.4E-18 4.6E-23 171.5 13.5 149 335-495 185-338 (365)
30 1wgm_A Ubiquitin conjugation f 99.8 2.7E-19 9.3E-24 139.0 6.4 74 44-117 14-88 (98)
31 2w18_A PALB2, fancn, partner a 99.8 1.1E-18 3.9E-23 166.2 11.3 143 338-495 193-352 (356)
32 2pm7_B Protein transport prote 99.8 4.4E-18 1.5E-22 162.8 15.4 149 335-495 18-184 (297)
33 2kre_A Ubiquitin conjugation f 99.8 2.8E-19 9.6E-24 139.5 5.6 71 46-116 23-93 (100)
34 3iz6_a 40S ribosomal protein R 99.8 6.9E-18 2.3E-22 167.4 16.6 147 338-495 170-324 (380)
35 2ymu_A WD-40 repeat protein; u 99.8 5.5E-18 1.9E-22 177.2 14.5 140 336-495 436-575 (577)
36 2xzm_R RACK1; ribosome, transl 99.7 2.4E-17 8.4E-22 160.9 17.8 121 373-495 18-144 (343)
37 2aq5_A Coronin-1A; WD40 repeat 99.7 6.9E-18 2.4E-22 168.5 13.9 149 341-495 50-202 (402)
38 4e54_B DNA damage-binding prot 99.7 3.8E-18 1.3E-22 172.4 11.5 143 338-495 132-277 (435)
39 3lrv_A PRE-mRNA-splicing facto 99.7 1.4E-17 4.8E-22 162.6 15.1 141 341-495 88-239 (343)
40 1erj_A Transcriptional repress 99.7 1.2E-17 4.2E-22 166.4 14.3 155 337-495 218-384 (393)
41 3dwl_C Actin-related protein 2 99.7 4.3E-18 1.5E-22 168.1 11.0 150 334-495 19-172 (377)
42 1nr0_A Actin interacting prote 99.7 1.6E-17 5.6E-22 175.3 16.1 152 335-495 68-265 (611)
43 4ery_A WD repeat-containing pr 99.7 2.6E-17 9E-22 158.2 16.1 144 335-495 74-218 (312)
44 1t1h_A Gspef-atpub14, armadill 99.7 8.2E-19 2.8E-23 131.6 4.3 70 47-116 3-73 (78)
45 3bg1_A Protein SEC13 homolog; 99.7 4.7E-18 1.6E-22 164.1 10.5 160 325-495 55-242 (316)
46 4e54_B DNA damage-binding prot 99.7 8E-18 2.7E-22 170.0 12.5 156 325-495 162-322 (435)
47 3bg1_A Protein SEC13 homolog; 99.7 5.3E-18 1.8E-22 163.8 10.1 149 335-495 22-193 (316)
48 4gq1_A NUP37; propeller, trans 99.7 5.3E-18 1.8E-22 169.0 10.4 149 337-495 100-281 (393)
49 3dwl_C Actin-related protein 2 99.7 9E-18 3.1E-22 165.8 11.9 149 335-495 64-231 (377)
50 3dm0_A Maltose-binding peripla 99.7 2.5E-17 8.5E-22 176.5 15.7 148 335-495 439-587 (694)
51 4aow_A Guanine nucleotide-bind 99.7 4.3E-17 1.5E-21 158.0 15.1 137 340-495 187-332 (340)
52 3f3f_A Nucleoporin SEH1; struc 99.7 3.1E-17 1E-21 158.9 14.0 151 338-495 71-332 (351)
53 2j04_B YDR362CP, TAU91; beta p 99.7 7E-17 2.4E-21 166.4 15.5 148 339-495 174-337 (524)
54 3vl1_A 26S proteasome regulato 99.7 2.4E-17 8.2E-22 165.1 11.8 144 335-495 106-273 (420)
55 2ymu_A WD-40 repeat protein; u 99.7 9.8E-17 3.3E-21 167.7 15.7 140 336-495 395-534 (577)
56 2oaj_A Protein SNI1; WD40 repe 99.7 4.2E-17 1.4E-21 179.2 13.3 157 335-495 444-656 (902)
57 2aq5_A Coronin-1A; WD40 repeat 99.7 5.7E-17 2E-21 161.8 12.6 155 326-495 80-249 (402)
58 3ztg_A E3 ubiquitin-protein li 99.7 1.1E-17 3.8E-22 129.7 5.4 71 47-117 8-82 (92)
59 3k26_A Polycomb protein EED; W 99.7 2E-16 6.7E-21 154.8 15.6 144 341-495 37-187 (366)
60 4gga_A P55CDC, cell division c 99.7 1E-16 3.6E-21 161.0 13.7 145 336-495 240-390 (420)
61 1sq9_A Antiviral protein SKI8; 99.7 1.7E-16 5.8E-21 157.5 15.0 144 336-495 196-390 (397)
62 3f3f_A Nucleoporin SEH1; struc 99.7 2.2E-16 7.6E-21 152.8 15.4 165 325-495 9-244 (351)
63 3jrp_A Fusion protein of prote 99.7 1.9E-16 6.6E-21 155.7 15.1 146 338-495 69-235 (379)
64 3ei3_B DNA damage-binding prot 99.7 1.5E-16 5E-21 157.5 14.1 154 325-495 71-231 (383)
65 3dm0_A Maltose-binding peripla 99.7 1.8E-16 6.1E-21 169.9 15.4 157 325-495 380-545 (694)
66 3lrv_A PRE-mRNA-splicing facto 99.7 1.5E-16 5E-21 155.4 13.4 142 337-495 138-287 (343)
67 2xyi_A Probable histone-bindin 99.7 1.6E-16 5.4E-21 160.3 14.0 146 337-495 243-405 (430)
68 3zwl_B Eukaryotic translation 99.7 3.8E-16 1.3E-20 152.8 16.1 143 336-495 185-341 (369)
69 2egp_A Tripartite motif-contai 99.7 1.8E-18 6.2E-23 130.2 -0.6 66 45-110 5-77 (79)
70 2y43_A E3 ubiquitin-protein li 99.7 9.8E-18 3.3E-22 131.9 3.6 74 45-118 15-89 (99)
71 4aow_A Guanine nucleotide-bind 99.7 3.7E-16 1.3E-20 151.4 15.6 167 323-495 34-241 (340)
72 1gxr_A ESG1, transducin-like e 99.7 4.1E-16 1.4E-20 150.7 15.4 149 336-495 61-209 (337)
73 3mmy_A MRNA export factor; mRN 99.7 3.4E-16 1.2E-20 153.1 14.6 122 324-460 36-163 (368)
74 3dw8_B Serine/threonine-protei 99.7 2.2E-16 7.5E-21 159.3 13.4 153 335-495 186-368 (447)
75 2xyi_A Probable histone-bindin 99.7 2.7E-16 9.4E-21 158.5 13.7 152 338-495 141-304 (430)
76 1k8k_C P40, ARP2/3 complex 41 99.7 3.8E-16 1.3E-20 153.4 14.2 148 335-495 17-168 (372)
77 3vl1_A 26S proteasome regulato 99.7 1.3E-16 4.5E-21 159.7 11.2 143 334-495 64-207 (420)
78 1jm7_B BARD1, BRCA1-associated 99.7 1.3E-17 4.3E-22 135.4 2.8 71 46-118 16-87 (117)
79 4ggc_A P55CDC, cell division c 99.7 3.3E-16 1.1E-20 150.3 12.8 146 335-495 159-310 (318)
80 3jrp_A Fusion protein of prote 99.7 5.2E-16 1.8E-20 152.5 14.6 150 335-495 20-186 (379)
81 1k8k_C P40, ARP2/3 complex 41 99.7 5.9E-16 2E-20 152.0 14.9 149 336-495 62-228 (372)
82 1pgu_A Actin interacting prote 99.7 6.3E-16 2.1E-20 162.5 16.1 113 372-495 484-609 (615)
83 3ei3_B DNA damage-binding prot 99.7 3.9E-16 1.3E-20 154.5 13.6 143 337-495 130-277 (383)
84 3dw8_B Serine/threonine-protei 99.7 2.9E-16 9.9E-21 158.5 12.4 153 335-495 37-253 (447)
85 2yu4_A E3 SUMO-protein ligase 99.7 2.4E-17 8.3E-22 127.6 3.3 68 49-116 4-81 (94)
86 3k26_A Polycomb protein EED; W 99.7 3.8E-16 1.3E-20 152.8 12.3 137 339-495 86-255 (366)
87 4a11_B DNA excision repair pro 99.7 1E-15 3.5E-20 152.0 15.7 146 340-495 158-360 (408)
88 1gxr_A ESG1, transducin-like e 99.7 1.1E-15 3.9E-20 147.5 15.4 141 336-495 151-291 (337)
89 3sfz_A APAF-1, apoptotic pepti 99.7 7.2E-16 2.5E-20 175.8 16.2 145 335-495 624-769 (1249)
90 2pm9_A Protein WEB1, protein t 99.7 4.9E-16 1.7E-20 155.1 13.1 147 338-495 178-332 (416)
91 3vu4_A KMHSV2; beta-propeller 99.7 1E-15 3.5E-20 150.3 14.9 143 342-495 75-266 (355)
92 3lrq_A E3 ubiquitin-protein li 99.7 7.6E-18 2.6E-22 132.4 -0.3 71 46-116 16-88 (100)
93 3i2n_A WD repeat-containing pr 99.6 5.5E-16 1.9E-20 151.2 12.5 147 336-495 178-348 (357)
94 3gre_A Serine/threonine-protei 99.6 7.8E-16 2.7E-20 155.1 13.9 162 326-495 62-240 (437)
95 1r5m_A SIR4-interacting protei 99.6 1.4E-15 4.9E-20 151.7 15.5 144 334-495 213-356 (425)
96 4aez_A CDC20, WD repeat-contai 99.6 1.4E-15 4.7E-20 151.8 15.2 142 337-495 185-331 (401)
97 3fl2_A E3 ubiquitin-protein li 99.6 2.9E-17 9.9E-22 134.9 2.3 71 46-116 46-118 (124)
98 4aez_A CDC20, WD repeat-contai 99.6 1.8E-15 6.2E-20 150.9 15.9 140 338-495 103-243 (401)
99 2ecw_A Tripartite motif-contai 99.6 9E-18 3.1E-22 128.4 -0.8 67 44-110 11-83 (85)
100 2f42_A STIP1 homology and U-bo 99.6 7E-17 2.4E-21 138.3 4.5 71 46-116 100-171 (179)
101 3vu4_A KMHSV2; beta-propeller 99.6 1E-15 3.5E-20 150.2 13.5 136 344-494 155-330 (355)
102 2ecv_A Tripartite motif-contai 99.6 1.6E-17 5.5E-22 127.0 0.1 66 44-109 11-82 (85)
103 1r5m_A SIR4-interacting protei 99.6 6.2E-16 2.1E-20 154.4 11.7 142 336-495 257-420 (425)
104 4gq1_A NUP37; propeller, trans 99.6 7.6E-16 2.6E-20 153.4 12.2 148 337-493 155-383 (393)
105 3jro_A Fusion protein of prote 99.6 1.1E-15 3.9E-20 165.0 14.0 146 338-495 67-233 (753)
106 2pm9_A Protein WEB1, protein t 99.6 1.2E-15 4E-20 152.4 12.9 162 326-495 112-289 (416)
107 3odt_A Protein DOA1; ubiquitin 99.6 2E-15 6.8E-20 144.3 14.0 137 337-495 154-291 (313)
108 3mkq_A Coatomer beta'-subunit; 99.6 1.1E-15 3.6E-20 166.5 13.2 145 335-495 22-167 (814)
109 3i2n_A WD repeat-containing pr 99.6 9.3E-16 3.2E-20 149.5 10.9 147 336-495 127-286 (357)
110 4gga_A P55CDC, cell division c 99.6 3.9E-15 1.3E-19 149.5 15.5 140 338-495 116-256 (420)
111 3v7d_B Cell division control p 99.6 4.8E-15 1.6E-19 150.6 16.3 159 325-495 160-336 (464)
112 2vdu_B TRNA (guanine-N(7)-)-me 99.6 3.2E-15 1.1E-19 151.5 14.8 151 336-495 112-266 (450)
113 2oit_A Nucleoporin 214KDA; NH2 99.6 8.7E-16 3E-20 154.9 10.5 121 374-495 90-218 (434)
114 2djb_A Polycomb group ring fin 99.6 1.8E-16 6.1E-21 116.6 3.9 60 45-104 8-68 (72)
115 2oaj_A Protein SNI1; WD40 repe 99.6 1.1E-15 3.6E-20 168.0 11.8 152 333-495 64-237 (902)
116 1sq9_A Antiviral protein SKI8; 99.6 9E-16 3.1E-20 152.3 10.2 149 336-495 135-317 (397)
117 2ckl_A Polycomb group ring fin 99.6 1.1E-16 3.7E-21 128.0 2.8 72 45-116 8-84 (108)
118 1z6u_A NP95-like ring finger p 99.6 9.6E-17 3.3E-21 135.5 2.5 71 46-116 72-144 (150)
119 3odt_A Protein DOA1; ubiquitin 99.6 3.8E-15 1.3E-19 142.3 13.9 137 337-495 113-250 (313)
120 3gre_A Serine/threonine-protei 99.6 2.7E-16 9.1E-21 158.6 5.8 143 337-495 181-354 (437)
121 3jro_A Fusion protein of prote 99.6 3.1E-15 1.1E-19 161.6 14.3 150 335-495 18-184 (753)
122 3zwl_B Eukaryotic translation 99.6 1.9E-14 6.4E-19 140.7 18.0 112 374-495 30-146 (369)
123 2yur_A Retinoblastoma-binding 99.6 3.4E-16 1.2E-20 115.6 4.1 60 45-104 8-71 (74)
124 1yfq_A Cell cycle arrest prote 99.6 2.8E-15 9.7E-20 145.4 11.8 142 335-495 20-174 (342)
125 2j04_A TAU60, YPL007P, hypothe 99.6 6.2E-15 2.1E-19 149.4 14.6 108 374-495 83-206 (588)
126 2ecy_A TNF receptor-associated 99.6 5.1E-16 1.7E-20 112.0 4.7 57 45-101 8-65 (66)
127 3mmy_A MRNA export factor; mRN 99.6 7E-15 2.4E-19 143.7 14.3 113 374-495 37-155 (368)
128 4a11_B DNA excision repair pro 99.6 1E-14 3.6E-19 144.7 15.1 162 325-495 41-213 (408)
129 3v7d_B Cell division control p 99.6 7.8E-15 2.7E-19 149.0 14.3 142 334-495 128-294 (464)
130 2j04_A TAU60, YPL007P, hypothe 99.6 6.3E-15 2.2E-19 149.3 13.3 152 329-495 88-249 (588)
131 4ayc_A E3 ubiquitin-protein li 99.6 3.6E-16 1.2E-20 130.7 3.4 65 48-114 49-113 (138)
132 1yfq_A Cell cycle arrest prote 99.6 1.4E-14 4.7E-19 140.5 15.1 149 338-495 112-277 (342)
133 2vdu_B TRNA (guanine-N(7)-)-me 99.6 6E-15 2E-19 149.5 13.0 144 336-495 159-334 (450)
134 4h5i_A Guanine nucleotide-exch 99.6 3.6E-15 1.2E-19 146.9 11.0 143 336-495 143-295 (365)
135 2csy_A Zinc finger protein 183 99.6 6.9E-16 2.4E-20 116.3 4.4 60 47-107 10-69 (81)
136 2ysl_A Tripartite motif-contai 99.6 9.6E-16 3.3E-20 113.2 4.7 57 45-101 13-72 (73)
137 3mkq_A Coatomer beta'-subunit; 99.6 1.1E-14 3.7E-19 158.6 15.2 113 374-495 11-123 (814)
138 1p22_A F-BOX/WD-repeat protein 99.6 1.6E-14 5.5E-19 145.6 14.6 138 338-495 223-360 (435)
139 2ovr_B FBW7, F-BOX/WD repeat p 99.6 2.2E-14 7.5E-19 145.0 14.8 139 334-495 125-263 (445)
140 4ggc_A P55CDC, cell division c 99.6 3.6E-14 1.2E-18 135.9 15.4 139 339-495 37-176 (318)
141 2c2l_A CHIP, carboxy terminus 99.6 1.1E-15 3.7E-20 144.9 4.5 70 47-116 203-273 (281)
142 2oit_A Nucleoporin 214KDA; NH2 99.6 8.8E-15 3E-19 147.5 10.9 146 335-492 101-264 (434)
143 1jm7_A BRCA1, breast cancer ty 99.6 3.6E-16 1.2E-20 126.2 0.6 70 47-116 16-88 (112)
144 3l11_A E3 ubiquitin-protein li 99.6 1.2E-15 4E-20 123.5 3.2 69 47-115 10-86 (115)
145 3ng2_A RNF4, snurf, ring finge 99.6 1.4E-15 4.7E-20 111.7 3.2 57 49-105 7-70 (71)
146 3hct_A TNF receptor-associated 99.6 9.2E-16 3.2E-20 124.5 2.5 74 45-118 11-85 (118)
147 1p22_A F-BOX/WD-repeat protein 99.5 5.4E-14 1.8E-18 141.8 15.6 139 337-495 182-320 (435)
148 2ct2_A Tripartite motif protei 99.5 2.4E-15 8E-20 115.6 3.8 64 43-106 6-79 (88)
149 2d8t_A Dactylidin, ring finger 99.5 1.7E-15 5.9E-20 110.9 2.3 52 49-100 12-63 (71)
150 3sfz_A APAF-1, apoptotic pepti 99.5 3.8E-14 1.3E-18 161.6 14.5 147 339-495 714-908 (1249)
151 3htk_C E3 SUMO-protein ligase 99.5 2.4E-15 8.2E-20 134.6 3.4 72 45-116 174-250 (267)
152 2ysj_A Tripartite motif-contai 99.5 3.7E-15 1.2E-19 106.4 3.7 49 44-92 12-63 (63)
153 2ovr_B FBW7, F-BOX/WD repeat p 99.5 7.6E-14 2.6E-18 141.0 14.6 134 337-492 288-430 (445)
154 2ckl_B Ubiquitin ligase protei 99.5 2.2E-15 7.6E-20 130.2 2.7 71 46-116 48-121 (165)
155 1pgu_A Actin interacting prote 99.5 4.2E-14 1.4E-18 148.5 12.8 144 337-495 77-233 (615)
156 2ea6_A Ring finger protein 4; 99.5 7.5E-15 2.6E-19 107.1 3.6 52 47-98 10-68 (69)
157 1g25_A CDK-activating kinase a 99.5 6.9E-15 2.3E-19 105.7 3.3 55 51-105 2-62 (65)
158 2xeu_A Ring finger protein 4; 99.5 3.9E-15 1.3E-19 106.8 2.0 55 51-105 2-63 (64)
159 2ecj_A Tripartite motif-contai 99.5 1.4E-14 4.7E-19 101.6 4.0 48 45-92 8-58 (58)
160 2w18_A PALB2, fancn, partner a 99.5 1.1E-13 3.9E-18 131.8 11.6 131 346-495 155-309 (356)
161 2ect_A Ring finger protein 126 99.5 1.6E-14 5.6E-19 108.0 4.4 58 47-104 10-70 (78)
162 1e4u_A Transcriptional repress 99.5 3E-14 1E-18 105.2 5.1 56 46-101 5-65 (78)
163 1bor_A Transcription factor PM 99.5 1.6E-14 5.4E-19 100.0 3.3 48 50-100 4-51 (56)
164 1rmd_A RAG1; V(D)J recombinati 99.5 7.7E-15 2.6E-19 118.8 1.5 72 45-116 16-89 (116)
165 3knv_A TNF receptor-associated 99.5 7.4E-15 2.5E-19 122.4 1.2 74 45-118 24-107 (141)
166 1iym_A EL5; ring-H2 finger, ub 99.4 7.4E-14 2.5E-18 96.6 4.1 49 49-97 2-54 (55)
167 2bay_A PRE-mRNA splicing facto 99.4 1.5E-14 5.2E-19 101.2 0.6 54 52-105 3-57 (61)
168 3hcs_A TNF receptor-associated 99.4 2.9E-14 1E-18 123.8 2.4 74 45-118 11-85 (170)
169 1l0q_A Surface layer protein; 99.4 1.9E-12 6.6E-17 128.0 14.2 136 340-495 4-142 (391)
170 2ecn_A Ring finger protein 141 99.4 3.8E-14 1.3E-18 103.5 1.2 54 46-100 9-62 (70)
171 3bws_A Protein LP49; two-domai 99.4 1.8E-12 6.2E-17 130.1 11.7 145 337-495 133-287 (433)
172 1chc_A Equine herpes virus-1 r 99.4 1.5E-13 5.3E-18 99.6 2.5 49 50-98 3-52 (68)
173 2ecm_A Ring finger and CHY zin 99.4 2E-13 6.8E-18 94.5 2.6 47 51-97 4-54 (55)
174 2l0b_A E3 ubiquitin-protein li 99.4 6.4E-13 2.2E-17 102.1 5.5 51 48-98 36-89 (91)
175 2ep4_A Ring finger protein 24; 99.3 2.5E-13 8.7E-18 100.3 2.9 53 46-98 9-64 (74)
176 1x4j_A Ring finger protein 38; 99.3 2.4E-13 8.1E-18 100.6 2.4 50 49-98 20-72 (75)
177 2kiz_A E3 ubiquitin-protein li 99.3 4E-13 1.4E-17 97.7 3.1 51 48-98 10-63 (69)
178 4ap4_A E3 ubiquitin ligase RNF 99.3 3.4E-13 1.2E-17 112.2 2.9 55 50-104 5-66 (133)
179 1l0q_A Surface layer protein; 99.3 1.8E-11 6E-16 121.1 15.4 135 341-495 47-184 (391)
180 4ic3_A E3 ubiquitin-protein li 99.3 4.6E-13 1.6E-17 98.4 1.8 48 47-98 19-67 (74)
181 3bws_A Protein LP49; two-domai 99.3 1.8E-11 6.2E-16 122.7 13.9 141 336-495 179-329 (433)
182 2ecg_A Baculoviral IAP repeat- 99.3 7.5E-13 2.6E-17 97.7 2.5 48 47-98 20-68 (75)
183 2hqs_A Protein TOLB; TOLB, PAL 99.3 2.5E-11 8.5E-16 121.5 14.1 124 348-491 159-289 (415)
184 1v87_A Deltex protein 2; ring- 99.2 4.5E-12 1.5E-16 102.2 4.0 48 51-98 24-94 (114)
185 2ecl_A Ring-box protein 2; RNF 99.2 4E-12 1.4E-16 95.2 2.2 49 51-99 14-77 (81)
186 4ap4_A E3 ubiquitin ligase RNF 99.2 3.2E-12 1.1E-16 106.3 1.6 56 50-105 70-132 (133)
187 1nir_A Nitrite reductase; hemo 99.2 1.4E-10 4.8E-15 120.1 14.3 141 336-494 147-305 (543)
188 2y1n_A E3 ubiquitin-protein li 99.2 1.6E-11 5.5E-16 117.5 5.0 52 49-100 329-381 (389)
189 2vje_A E3 ubiquitin-protein li 99.1 8.7E-12 3E-16 88.5 1.7 47 51-97 7-56 (64)
190 2hqs_A Protein TOLB; TOLB, PAL 99.1 5.9E-10 2E-14 111.5 14.6 134 337-490 189-331 (415)
191 2vje_B MDM4 protein; proto-onc 99.1 1.5E-11 5.2E-16 87.0 1.7 46 52-97 7-55 (63)
192 2yho_A E3 ubiquitin-protein li 99.1 8.7E-12 3E-16 92.5 -0.3 48 47-98 13-61 (79)
193 3dpl_R Ring-box protein 1; ubi 99.1 5E-11 1.7E-15 93.4 3.3 48 51-98 36-101 (106)
194 1wim_A KIAA0161 protein; ring 99.0 2.5E-11 8.6E-16 93.9 0.7 45 51-95 4-61 (94)
195 1ri6_A Putative isomerase YBHE 99.0 4.5E-10 1.5E-14 108.3 8.4 140 341-495 8-155 (343)
196 2ea5_A Cell growth regulator w 99.0 1.8E-10 6.3E-15 82.5 3.8 45 50-98 13-58 (68)
197 2ojh_A Uncharacterized protein 99.0 5.9E-10 2E-14 104.7 8.4 134 343-491 146-293 (297)
198 2ojh_A Uncharacterized protein 99.0 2E-09 6.7E-14 101.0 10.5 130 344-495 18-155 (297)
199 3o4h_A Acylamino-acid-releasin 99.0 7.4E-10 2.5E-14 115.8 8.0 105 380-495 153-271 (582)
200 3t6p_A Baculoviral IAP repeat- 99.0 1.2E-10 4.2E-15 111.1 1.6 48 47-98 290-338 (345)
201 1ri6_A Putative isomerase YBHE 98.9 4.5E-09 1.5E-13 101.2 11.5 146 337-495 48-204 (343)
202 3u4y_A Uncharacterized protein 98.9 1E-08 3.5E-13 98.5 13.4 137 339-494 11-154 (331)
203 4a0k_B E3 ubiquitin-protein li 98.9 1.5E-10 5E-15 91.9 0.2 47 52-98 48-112 (117)
204 1xfd_A DIP, dipeptidyl aminope 98.9 2.3E-09 7.8E-14 115.0 9.2 139 335-491 25-194 (723)
205 3hfq_A Uncharacterized protein 98.9 8.2E-09 2.8E-13 100.1 11.4 151 337-494 151-311 (347)
206 2ecf_A Dipeptidyl peptidase IV 98.9 5E-09 1.7E-13 112.7 10.1 105 378-491 110-230 (741)
207 1k32_A Tricorn protease; prote 98.8 1.4E-08 4.7E-13 113.7 13.3 108 374-492 376-494 (1045)
208 3vgz_A Uncharacterized protein 98.8 3.2E-08 1.1E-12 95.7 13.8 141 341-494 104-256 (353)
209 1pby_B Quinohemoprotein amine 98.8 1.1E-08 3.8E-13 98.2 9.6 134 341-494 4-157 (337)
210 2ecf_A Dipeptidyl peptidase IV 98.8 2E-08 6.8E-13 108.0 12.0 107 376-494 36-175 (741)
211 3scy_A Hypothetical bacterial 98.8 3.7E-08 1.3E-12 96.0 12.6 145 341-494 170-331 (361)
212 1z68_A Fibroblast activation p 98.8 6E-09 2E-13 111.7 7.3 128 344-490 32-189 (719)
213 1nir_A Nitrite reductase; hemo 98.8 3.8E-08 1.3E-12 101.8 12.6 143 336-495 188-350 (543)
214 3hfq_A Uncharacterized protein 98.8 5.2E-08 1.8E-12 94.4 12.8 135 347-494 62-212 (347)
215 2d8s_A Cellular modulator of i 98.8 3.2E-09 1.1E-13 78.4 3.2 50 50-99 13-71 (80)
216 3u4y_A Uncharacterized protein 98.7 9.2E-08 3.2E-12 91.7 12.3 139 341-495 55-202 (331)
217 4a5s_A Dipeptidyl peptidase 4 98.7 2.3E-08 7.7E-13 107.7 8.7 143 334-492 24-193 (740)
218 3vgz_A Uncharacterized protein 98.7 8.5E-08 2.9E-12 92.7 11.9 129 347-494 68-209 (353)
219 1xfd_A DIP, dipeptidyl aminope 98.7 1.7E-08 6E-13 108.0 7.1 106 374-489 111-274 (723)
220 2z3z_A Dipeptidyl aminopeptida 98.7 3.7E-08 1.2E-12 105.3 9.5 133 347-491 100-279 (706)
221 3scy_A Hypothetical bacterial 98.7 3.2E-07 1.1E-11 89.3 15.1 117 376-494 154-285 (361)
222 1jmx_B Amine dehydrogenase; ox 98.6 5.6E-08 1.9E-12 93.8 8.8 133 338-489 11-166 (349)
223 1pby_B Quinohemoprotein amine 98.6 7.9E-08 2.7E-12 92.1 9.8 110 341-464 49-170 (337)
224 1k32_A Tricorn protease; prote 98.6 9.6E-08 3.3E-12 106.9 11.1 107 374-491 334-442 (1045)
225 1q7f_A NHL, brain tumor CG1071 98.6 5.6E-07 1.9E-11 84.4 14.2 137 339-495 133-275 (286)
226 3o4h_A Acylamino-acid-releasin 98.6 4.8E-08 1.6E-12 102.0 7.3 132 336-492 159-304 (582)
227 3azo_A Aminopeptidase; POP fam 98.6 1.6E-07 5.5E-12 99.5 10.6 108 375-492 128-264 (662)
228 1z68_A Fibroblast activation p 98.6 4.1E-08 1.4E-12 105.2 5.8 109 377-488 110-271 (719)
229 1jmx_B Amine dehydrogenase; ox 98.6 9.7E-08 3.3E-12 92.1 7.9 100 381-490 4-112 (349)
230 1xip_A Nucleoporin NUP159; bet 98.5 6.1E-07 2.1E-11 87.8 12.1 100 375-495 87-186 (388)
231 1jof_A Carboxy-CIS,CIS-muconat 98.5 3.3E-07 1.1E-11 89.6 9.6 145 337-494 50-218 (365)
232 2bkl_A Prolyl endopeptidase; m 98.5 3.6E-07 1.2E-11 97.5 10.0 109 374-491 118-248 (695)
233 2z3z_A Dipeptidyl aminopeptida 98.5 2.7E-07 9.3E-12 98.5 8.8 100 377-489 82-200 (706)
234 1xip_A Nucleoporin NUP159; bet 98.4 4.2E-07 1.4E-11 88.9 8.6 130 330-486 90-230 (388)
235 2ct0_A Non-SMC element 1 homol 98.4 2.1E-07 7.2E-12 67.0 4.0 46 52-97 15-63 (74)
236 2xdw_A Prolyl endopeptidase; a 98.4 1.1E-06 3.7E-11 94.1 10.7 106 374-489 122-252 (710)
237 4a5s_A Dipeptidyl peptidase 4 98.4 4.8E-07 1.7E-11 97.3 8.0 105 377-494 17-135 (740)
238 3m62_A Ubiquitin conjugation f 98.3 3E-07 1E-11 97.1 4.8 73 46-118 885-958 (968)
239 1jof_A Carboxy-CIS,CIS-muconat 98.3 7.9E-07 2.7E-11 86.9 7.6 110 376-494 39-170 (365)
240 3fvz_A Peptidyl-glycine alpha- 98.3 1.8E-06 6.1E-11 83.1 9.4 108 377-494 196-316 (329)
241 3fvz_A Peptidyl-glycine alpha- 98.3 1.3E-05 4.3E-10 77.0 15.4 110 376-494 23-169 (329)
242 2dg1_A DRP35, lactonase; beta 98.3 2.9E-05 9.8E-10 74.3 17.2 107 374-489 42-154 (333)
243 1q7f_A NHL, brain tumor CG1071 98.2 1.5E-05 5.1E-10 74.5 14.2 108 375-494 119-232 (286)
244 3vk6_A E3 ubiquitin-protein li 98.2 5.6E-07 1.9E-11 67.1 2.7 45 54-98 3-49 (101)
245 3e5z_A Putative gluconolactona 98.2 1.2E-05 4.2E-10 75.7 12.0 111 374-494 169-281 (296)
246 2oiz_A Aromatic amine dehydrog 98.2 8.3E-06 2.8E-10 79.5 11.0 89 382-482 259-360 (361)
247 1rwi_B Serine/threonine-protei 98.1 1.9E-05 6.5E-10 73.0 12.6 110 377-495 150-259 (270)
248 2gop_A Trilobed protease; beta 98.1 7.4E-06 2.5E-10 78.9 9.8 99 378-490 60-190 (347)
249 2oiz_A Aromatic amine dehydrog 98.1 8.6E-06 2.9E-10 79.4 10.2 128 345-493 28-175 (361)
250 3azo_A Aminopeptidase; POP fam 98.1 8.7E-06 3E-10 86.1 10.4 112 375-494 186-317 (662)
251 3no2_A Uncharacterized protein 98.1 1.3E-05 4.4E-10 75.0 10.4 135 338-494 5-149 (276)
252 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.4E-06 4.7E-11 60.2 2.7 49 50-98 4-59 (60)
253 1qks_A Cytochrome CD1 nitrite 98.1 3.9E-05 1.3E-09 79.2 13.9 137 339-493 168-322 (567)
254 3k1l_B Fancl; UBC, ring, RWD, 98.0 1.1E-06 3.7E-11 81.5 1.3 49 50-98 306-373 (381)
255 3e5z_A Putative gluconolactona 98.0 5.4E-05 1.9E-09 71.1 12.8 136 340-494 42-196 (296)
256 3pe7_A Oligogalacturonate lyas 98.0 2.2E-05 7.5E-10 76.8 9.8 95 382-486 41-141 (388)
257 2dg1_A DRP35, lactonase; beta 97.9 8.2E-05 2.8E-09 71.1 13.2 140 339-494 57-207 (333)
258 3pe7_A Oligogalacturonate lyas 97.9 3.3E-05 1.1E-09 75.5 10.3 107 374-489 78-208 (388)
259 1rwi_B Serine/threonine-protei 97.9 9.8E-05 3.4E-09 68.1 12.4 110 376-494 107-216 (270)
260 1yr2_A Prolyl oligopeptidase; 97.9 2.3E-05 7.9E-10 84.1 9.1 106 375-491 161-289 (741)
261 3c5m_A Oligogalacturonate lyas 97.7 0.00011 3.8E-09 71.7 10.4 99 378-489 239-370 (396)
262 1qks_A Cytochrome CD1 nitrite 97.7 0.00015 5E-09 74.9 11.2 100 384-494 163-269 (567)
263 3g4e_A Regucalcin; six bladed 97.7 0.00025 8.5E-09 66.8 11.8 107 377-488 149-260 (297)
264 3dsm_A Uncharacterized protein 97.7 0.00023 7.7E-09 68.2 11.3 128 347-494 151-296 (328)
265 1pjx_A Dfpase, DIISOPROPYLFLUO 97.7 0.0005 1.7E-08 64.8 13.6 112 377-493 172-292 (314)
266 3no2_A Uncharacterized protein 97.6 0.00023 7.8E-09 66.4 10.4 94 387-493 4-101 (276)
267 3dsm_A Uncharacterized protein 97.6 0.00019 6.7E-09 68.7 9.6 131 339-490 55-192 (328)
268 2z2n_A Virginiamycin B lyase; 97.6 0.0012 4.2E-08 61.3 14.4 109 374-494 12-123 (299)
269 2xdw_A Prolyl endopeptidase; a 97.5 0.00044 1.5E-08 73.7 12.2 111 375-494 231-360 (710)
270 3c5m_A Oligogalacturonate lyas 97.5 3.4E-05 1.2E-09 75.4 3.3 87 375-470 34-124 (396)
271 3iuj_A Prolyl endopeptidase; h 97.5 0.00014 4.8E-09 77.3 8.3 103 374-487 126-251 (693)
272 2qe8_A Uncharacterized protein 97.5 0.00089 3.1E-08 64.4 12.8 111 374-491 64-216 (343)
273 2gop_A Trilobed protease; beta 97.5 0.0005 1.7E-08 65.9 10.5 95 377-489 15-123 (347)
274 2z2n_A Virginiamycin B lyase; 97.4 0.0022 7.5E-08 59.6 14.2 110 375-494 97-207 (299)
275 2bkl_A Prolyl endopeptidase; m 97.4 0.00063 2.2E-08 72.3 11.6 110 374-495 224-344 (695)
276 3hrp_A Uncharacterized protein 97.4 0.0008 2.7E-08 66.6 10.6 107 377-494 131-243 (409)
277 2jun_A Midline-1; B-BOX, TRIM, 97.3 5.8E-05 2E-09 58.6 1.7 33 51-83 2-37 (101)
278 3hrp_A Uncharacterized protein 97.3 0.0022 7.4E-08 63.4 13.3 111 381-494 271-404 (409)
279 2ghs_A AGR_C_1268P; regucalcin 97.3 0.0046 1.6E-07 58.9 14.9 109 377-490 179-293 (326)
280 1pjx_A Dfpase, DIISOPROPYLFLUO 97.3 0.0012 4.2E-08 62.0 10.5 107 377-494 117-250 (314)
281 3sjl_D Methylamine dehydrogena 97.2 0.00087 3E-08 65.2 9.2 98 349-465 60-177 (386)
282 2mad_H Methylamine dehydrogena 97.2 0.0043 1.5E-07 60.4 13.4 97 349-465 48-165 (373)
283 2qc5_A Streptogramin B lactona 97.2 0.0092 3.2E-07 55.2 15.2 109 375-494 18-128 (300)
284 3g4e_A Regucalcin; six bladed 97.1 0.0043 1.5E-07 58.1 12.5 109 377-494 98-223 (297)
285 3dr2_A Exported gluconolactona 97.1 0.0026 8.8E-08 59.9 10.6 107 378-494 189-301 (305)
286 2hz6_A Endoplasmic reticulum t 97.1 2.1E-05 7.3E-10 76.8 -4.2 136 337-494 8-143 (369)
287 2qc5_A Streptogramin B lactona 97.1 0.0097 3.3E-07 55.1 14.2 110 375-494 144-254 (300)
288 2iwa_A Glutamine cyclotransfer 97.0 0.0056 1.9E-07 56.2 11.4 105 377-494 21-129 (266)
289 3sjl_D Methylamine dehydrogena 97.0 0.0014 4.8E-08 63.7 7.8 101 383-494 39-163 (386)
290 2ghs_A AGR_C_1268P; regucalcin 97.0 0.0083 2.8E-07 57.1 13.0 108 377-494 134-254 (326)
291 2qe8_A Uncharacterized protein 96.9 0.0033 1.1E-07 60.3 9.9 111 378-491 196-312 (343)
292 2mad_H Methylamine dehydrogena 96.8 0.0075 2.6E-07 58.7 11.7 100 384-494 28-151 (373)
293 3dr2_A Exported gluconolactona 96.8 0.0082 2.8E-07 56.4 11.6 108 375-490 84-208 (305)
294 3nw0_A Non-structural maintena 96.7 0.00067 2.3E-08 61.1 2.9 47 52-98 180-229 (238)
295 3nol_A Glutamine cyclotransfer 96.7 0.011 3.7E-07 53.8 10.6 106 376-494 42-149 (262)
296 3nok_A Glutaminyl cyclase; bet 96.6 0.021 7.2E-07 52.0 12.0 103 376-494 54-158 (268)
297 3c75_H MADH, methylamine dehyd 96.6 0.0041 1.4E-07 61.5 7.9 125 348-492 99-250 (426)
298 1yr2_A Prolyl oligopeptidase; 96.6 0.019 6.4E-07 61.4 13.4 111 375-494 266-387 (741)
299 3mbr_X Glutamine cyclotransfer 96.5 0.037 1.3E-06 49.8 13.0 105 375-494 19-127 (243)
300 3pbp_A Nucleoporin NUP82; beta 96.2 0.11 3.6E-06 50.6 14.5 114 378-494 67-206 (452)
301 3iuj_A Prolyl endopeptidase; h 96.1 0.031 1.1E-06 59.2 12.0 132 343-490 150-301 (693)
302 1mda_H Methylamine dehydrogena 96.1 0.0098 3.4E-07 57.6 7.2 88 390-489 34-143 (368)
303 1fwx_A Nitrous oxide reductase 95.9 0.01 3.5E-07 60.5 6.6 109 379-489 279-407 (595)
304 3c75_H MADH, methylamine dehyd 95.9 0.014 4.8E-07 57.6 7.5 98 386-494 82-203 (426)
305 1npe_A Nidogen, entactin; glyc 95.9 0.22 7.4E-06 45.3 15.3 101 378-488 37-140 (267)
306 2hz6_A Endoplasmic reticulum t 95.8 0.0014 4.8E-08 63.8 -0.4 70 387-466 8-77 (369)
307 1mda_H Methylamine dehydrogena 95.7 0.024 8.2E-07 54.9 8.2 88 382-478 269-366 (368)
308 1npe_A Nidogen, entactin; glyc 95.6 0.27 9.3E-06 44.7 14.4 109 377-494 79-192 (267)
309 2xe4_A Oligopeptidase B; hydro 95.4 0.042 1.4E-06 58.7 9.6 100 378-488 175-289 (751)
310 2iwa_A Glutamine cyclotransfer 95.3 0.09 3.1E-06 48.1 9.9 130 344-494 82-231 (266)
311 1yiq_A Quinohemoprotein alcoho 95.2 0.026 8.8E-07 59.7 6.7 81 398-488 455-537 (689)
312 3i2d_A E3 SUMO-protein ligase 95.1 0.0085 2.9E-07 56.7 2.5 64 50-113 247-315 (371)
313 2ece_A 462AA long hypothetical 95.1 0.12 4.1E-06 50.8 10.6 138 341-489 99-272 (462)
314 3tc9_A Hypothetical hydrolase; 95.0 0.24 8E-06 49.0 12.9 111 376-494 178-295 (430)
315 3v64_C Agrin; beta propeller, 94.9 0.42 1.4E-05 45.6 14.0 109 377-493 116-227 (349)
316 1kb0_A Quinohemoprotein alcoho 94.9 0.034 1.2E-06 58.7 6.6 78 398-485 457-535 (677)
317 3v64_C Agrin; beta propeller, 94.7 0.52 1.8E-05 45.0 14.0 110 377-493 73-184 (349)
318 1weo_A Cellulose synthase, cat 94.7 0.026 8.8E-07 40.8 3.4 47 52-98 16-70 (93)
319 2p4o_A Hypothetical protein; p 94.7 0.49 1.7E-05 44.0 13.6 106 377-493 32-140 (306)
320 3nok_A Glutaminyl cyclase; bet 94.7 0.22 7.4E-06 45.3 10.5 96 380-487 139-253 (268)
321 4fo9_A E3 SUMO-protein ligase 94.6 0.015 5.1E-07 54.8 2.6 64 49-112 212-280 (360)
322 3mbr_X Glutamine cyclotransfer 94.4 0.39 1.3E-05 43.1 11.5 118 349-488 86-222 (243)
323 2cs3_A Protein C14ORF4, MY039 94.2 0.017 5.9E-07 40.6 1.6 35 51-85 14-52 (93)
324 3v65_B Low-density lipoprotein 94.0 0.58 2E-05 45.4 12.9 108 376-490 115-223 (386)
325 1ijq_A LDL receptor, low-densi 94.0 0.88 3E-05 42.6 13.7 109 377-493 77-188 (316)
326 3v65_B Low-density lipoprotein 93.9 0.47 1.6E-05 46.0 12.1 108 378-493 160-270 (386)
327 2ece_A 462AA long hypothetical 93.9 0.21 7.3E-06 49.1 9.2 107 377-493 188-345 (462)
328 1tl2_A L10, protein (tachylect 93.8 0.19 6.4E-06 44.3 7.7 106 378-493 42-156 (236)
329 3nol_A Glutamine cyclotransfer 93.8 0.49 1.7E-05 42.9 10.9 97 386-488 134-243 (262)
330 1ijq_A LDL receptor, low-densi 93.5 1.2 4.2E-05 41.6 13.9 107 376-487 29-138 (316)
331 3p5b_L Low density lipoprotein 93.4 1.3 4.4E-05 43.1 14.2 110 376-493 158-270 (400)
332 2xe4_A Oligopeptidase B; hydro 93.4 0.43 1.5E-05 50.8 11.5 105 380-490 224-340 (751)
333 2p9w_A MAL S 1 allergenic prot 93.3 1.1 3.8E-05 42.1 12.7 112 378-493 64-208 (334)
334 1fwx_A Nitrous oxide reductase 93.1 0.39 1.3E-05 48.9 10.0 64 427-493 278-354 (595)
335 1kb0_A Quinohemoprotein alcoho 92.9 0.19 6.4E-06 53.0 7.6 45 448-494 457-501 (677)
336 3qqz_A Putative uncharacterize 92.8 2.1 7.3E-05 38.6 13.6 107 374-489 24-140 (255)
337 3p5b_L Low density lipoprotein 92.8 2.1 7.2E-05 41.6 14.7 108 376-487 111-220 (400)
338 2p4o_A Hypothetical protein; p 92.6 0.91 3.1E-05 42.1 11.4 102 378-489 170-277 (306)
339 3q7m_A Lipoprotein YFGL, BAMB; 92.5 0.69 2.4E-05 44.2 10.8 95 387-494 276-372 (376)
340 3sov_A LRP-6, low-density lipo 92.5 1.8 6E-05 40.7 13.3 109 377-493 79-190 (318)
341 2fp8_A Strictosidine synthase; 92.3 0.74 2.5E-05 43.1 10.4 101 377-488 126-247 (322)
342 2fp8_A Strictosidine synthase; 92.3 0.76 2.6E-05 43.0 10.5 105 379-493 187-306 (322)
343 3m0c_C LDL receptor, low-densi 92.2 1.5 5.3E-05 46.7 13.7 110 376-493 470-582 (791)
344 2ism_A Putative oxidoreductase 92.1 0.62 2.1E-05 44.5 9.7 106 377-488 31-153 (352)
345 3hxj_A Pyrrolo-quinoline quino 92.1 0.3 1E-05 45.6 7.3 101 376-492 136-236 (330)
346 3m0c_C LDL receptor, low-densi 92.0 1.6 5.6E-05 46.5 13.5 108 375-487 422-532 (791)
347 2ko5_A Ring finger protein Z; 91.7 0.064 2.2E-06 39.2 1.5 48 49-98 25-73 (99)
348 3tc9_A Hypothetical hydrolase; 91.5 0.86 2.9E-05 44.9 10.2 106 378-494 138-251 (430)
349 4hw6_A Hypothetical protein, I 91.3 0.86 2.9E-05 44.9 10.0 111 376-494 181-298 (433)
350 3qqz_A Putative uncharacterize 91.3 3.4 0.00012 37.3 13.1 112 375-492 119-245 (255)
351 3ghg_A Fibrinogen alpha chain; 91.2 0.31 1.1E-05 47.4 6.1 28 87-116 43-71 (562)
352 1cru_A Protein (soluble quinop 91.0 1 3.6E-05 44.6 10.2 112 377-489 27-163 (454)
353 4hw6_A Hypothetical protein, I 90.7 1.2 4.1E-05 43.9 10.3 109 379-494 230-368 (433)
354 1yiq_A Quinohemoprotein alcoho 90.6 1.1 3.6E-05 47.3 10.4 46 447-494 454-499 (689)
355 2p9w_A MAL S 1 allergenic prot 90.4 2.1 7.1E-05 40.2 11.0 106 379-493 15-161 (334)
356 3hxj_A Pyrrolo-quinoline quino 89.6 1.1 3.7E-05 41.7 8.6 104 376-494 214-318 (330)
357 3kya_A Putative phosphatase; s 89.4 2.9 9.9E-05 41.8 11.8 113 377-494 186-335 (496)
358 2g8s_A Glucose/sorbosone dehyd 89.3 1.9 6.5E-05 41.1 10.2 108 378-489 19-149 (353)
359 3sov_A LRP-6, low-density lipo 89.2 7.6 0.00026 36.2 14.2 108 376-493 121-231 (318)
360 2ad6_A Methanol dehydrogenase 89.2 0.55 1.9E-05 48.2 6.6 47 438-485 475-522 (571)
361 3a9g_A Putative uncharacterize 89.0 1.2 4.3E-05 42.4 8.6 107 377-489 29-154 (354)
362 4a0p_A LRP6, LRP-6, low-densit 88.5 6.8 0.00023 40.6 14.4 103 376-487 36-141 (628)
363 1n7d_A LDL receptor, low-densi 88.5 0.59 2E-05 49.3 6.4 108 378-494 454-565 (699)
364 2xbg_A YCF48-like protein; pho 88.4 10 0.00035 35.4 14.6 108 375-493 161-272 (327)
365 1flg_A Protein (quinoprotein e 87.9 0.61 2.1E-05 48.0 5.9 45 438-483 497-542 (582)
366 1wff_A Riken cDNA 2810002D23 p 87.8 0.55 1.9E-05 33.9 3.8 42 53-97 26-69 (85)
367 3das_A Putative oxidoreductase 87.1 5.4 0.00019 37.8 11.6 112 376-489 31-159 (347)
368 1k3i_A Galactose oxidase precu 87.1 3.6 0.00012 42.8 11.5 99 381-488 190-305 (656)
369 1n7d_A LDL receptor, low-densi 87.1 0.78 2.7E-05 48.4 6.3 107 377-487 406-514 (699)
370 3nmd_A CGMP dependent protein 87.0 3.9 0.00013 28.4 7.5 35 182-216 32-66 (72)
371 3q7m_A Lipoprotein YFGL, BAMB; 87.0 4.6 0.00016 38.3 11.4 92 388-494 239-331 (376)
372 4a2l_A BT_4663, two-component 86.8 11 0.00037 40.1 15.3 108 376-492 405-519 (795)
373 3sre_A PON1, serum paraoxonase 86.8 5.7 0.0002 37.8 11.6 103 377-490 165-287 (355)
374 2gmg_A Hypothetical protein PF 86.6 0.25 8.4E-06 37.3 1.5 29 64-97 67-95 (105)
375 1deq_A Fibrinogen (alpha chain 86.5 6.1 0.00021 37.0 10.9 8 86-93 45-53 (390)
376 4a2l_A BT_4663, two-component 86.4 10 0.00036 40.3 14.9 111 376-492 356-473 (795)
377 1kv9_A Type II quinohemoprotei 86.3 0.82 2.8E-05 48.0 5.9 62 397-467 437-498 (668)
378 3pbp_A Nucleoporin NUP82; beta 86.1 2.8 9.6E-05 40.8 9.0 78 375-453 123-208 (452)
379 3s94_A LRP-6, low-density lipo 86.0 10 0.00035 39.1 14.0 103 377-487 349-453 (619)
380 3s94_A LRP-6, low-density lipo 85.3 9.8 0.00033 39.3 13.4 109 377-493 84-195 (619)
381 4a0p_A LRP6, LRP-6, low-densit 85.2 11 0.00039 38.8 13.8 108 377-493 80-190 (628)
382 1gmj_A ATPase inhibitor; coile 85.1 5.5 0.00019 28.6 7.7 40 172-211 40-79 (84)
383 3mq7_A Bone marrow stromal ant 84.9 11 0.00038 28.6 12.3 50 165-214 53-102 (121)
384 2wg3_C Hedgehog-interacting pr 84.5 10 0.00035 37.5 12.6 112 378-491 15-160 (463)
385 2fiy_A Protein FDHE homolog; F 83.1 0.28 9.5E-06 45.7 0.5 46 50-95 180-231 (309)
386 2jrp_A Putative cytoplasmic pr 83.1 0.23 8E-06 35.6 -0.0 41 53-98 3-43 (81)
387 2l5g_B Putative uncharacterize 82.8 5.1 0.00018 24.3 5.7 33 180-212 6-38 (42)
388 2k5c_A Uncharacterized protein 82.5 0.42 1.4E-05 33.7 1.1 18 87-104 52-69 (95)
389 1weu_A Inhibitor of growth fam 82.5 1.9 6.6E-05 31.8 4.8 47 48-96 32-86 (91)
390 3kya_A Putative phosphatase; s 82.5 10 0.00035 37.8 11.6 76 379-455 249-339 (496)
391 2jne_A Hypothetical protein YF 82.0 0.18 6.1E-06 37.2 -1.0 41 53-98 33-73 (101)
392 3mjh_B Early endosome antigen 81.5 0.2 6.7E-06 29.4 -0.7 16 51-66 4-19 (34)
393 2ad6_A Methanol dehydrogenase 81.2 2.8 9.7E-05 42.9 7.3 47 446-494 442-488 (571)
394 2xbg_A YCF48-like protein; pho 80.7 24 0.00084 32.7 13.3 105 377-493 122-227 (327)
395 3v9f_A Two-component system se 80.2 17 0.0006 38.4 13.4 108 376-493 406-518 (781)
396 1k3i_A Galactose oxidase precu 79.7 4.9 0.00017 41.8 8.7 102 380-489 402-530 (656)
397 3amr_A 3-phytase; beta-propell 79.1 15 0.00052 34.7 10.9 114 377-492 128-255 (355)
398 1kv9_A Type II quinohemoprotei 78.4 4.1 0.00014 42.6 7.6 47 446-494 436-482 (668)
399 1m3v_A FLIN4, fusion of the LI 77.6 1.1 3.8E-05 35.3 2.3 49 53-101 33-84 (122)
400 2jmo_A Parkin; IBR, E3 ligase, 77.5 0.8 2.7E-05 33.1 1.3 37 52-90 25-74 (80)
401 1flg_A Protein (quinoprotein e 77.4 4 0.00014 41.8 7.0 46 447-494 465-510 (582)
402 1w6s_A Methanol dehydrogenase 77.0 4.1 0.00014 41.9 6.9 29 438-466 484-512 (599)
403 3oja_B Anopheles plasmodium-re 76.4 17 0.00059 37.1 11.6 12 73-84 356-367 (597)
404 1tl2_A L10, protein (tachylect 76.2 36 0.0012 29.9 11.5 105 379-493 90-203 (236)
405 6rxn_A Rubredoxin; electron tr 75.0 1.6 5.5E-05 27.6 2.0 34 52-95 4-39 (46)
406 2ct7_A Ring finger protein 31; 74.5 0.84 2.9E-05 33.5 0.7 29 54-82 27-61 (86)
407 1wd2_A Ariadne-1 protein homol 74.2 1.1 3.6E-05 30.3 1.1 33 53-85 7-47 (60)
408 1wil_A KIAA1045 protein; ring 74.2 3.3 0.00011 29.7 3.6 35 47-82 10-47 (89)
409 3v9f_A Two-component system se 74.1 53 0.0018 34.6 15.0 103 376-492 449-560 (781)
410 1z2q_A LM5-1; membrane protein 73.5 4 0.00014 29.6 4.2 32 51-82 20-55 (84)
411 2lri_C Autoimmune regulator; Z 73.2 3.8 0.00013 28.2 3.8 43 52-96 12-60 (66)
412 3sbq_A Nitrous-oxide reductase 73.0 20 0.0007 36.1 10.3 76 381-457 327-408 (638)
413 1y02_A CARP2, FYVE-ring finger 72.9 0.53 1.8E-05 36.9 -0.8 42 52-93 19-64 (120)
414 2xzh_A Clathrin heavy chain 1; 72.8 63 0.0021 30.3 13.2 102 374-477 197-310 (365)
415 2p22_A Suppressor protein STP2 72.2 32 0.0011 28.7 9.8 37 175-211 48-84 (174)
416 1vfy_A Phosphatidylinositol-3- 71.8 2.2 7.6E-05 30.1 2.4 30 53-82 12-45 (73)
417 2v71_A Nuclear distribution pr 71.7 45 0.0015 28.1 12.6 55 168-222 73-127 (189)
418 3iv1_A Tumor susceptibility ge 71.5 24 0.00083 24.9 10.2 43 169-211 32-74 (78)
419 3mq9_A Bone marrow stromal ant 71.1 42 0.0014 33.0 12.5 23 191-213 444-466 (471)
420 1deq_A Fibrinogen (alpha chain 70.3 48 0.0016 31.1 11.4 18 193-210 137-154 (390)
421 3mq9_A Bone marrow stromal ant 69.6 48 0.0016 32.6 12.6 41 170-210 430-470 (471)
422 2yw8_A RUN and FYVE domain-con 69.3 2.1 7.3E-05 31.0 1.9 32 52-83 19-54 (82)
423 3s84_A Apolipoprotein A-IV; fo 69.0 67 0.0023 29.0 13.3 16 176-191 81-96 (273)
424 2yy0_A C-MYC-binding protein; 68.6 13 0.00045 24.2 5.3 31 184-214 20-50 (53)
425 1rut_X Flinc4, fusion protein 67.9 1.6 5.6E-05 37.3 1.2 47 52-98 32-81 (188)
426 3nmd_A CGMP dependent protein 67.5 24 0.00083 24.4 6.7 31 180-210 37-67 (72)
427 1f62_A Transcription factor WS 66.6 4.1 0.00014 26.2 2.6 42 54-95 2-50 (51)
428 1x4w_A Hypothetical protein FL 66.0 3 0.0001 28.6 1.9 26 52-77 15-44 (67)
429 1joc_A EEA1, early endosomal a 65.8 2.2 7.5E-05 33.7 1.4 25 54-78 71-99 (125)
430 4e61_A Protein BIM1; EB1-like 64.9 24 0.00084 26.5 6.8 35 187-221 15-49 (106)
431 2dfs_A Myosin-5A; myosin-V, in 64.6 66 0.0022 35.5 13.2 19 192-210 1025-1043(1080)
432 2o35_A Hypothetical protein DU 63.1 2.1 7.2E-05 31.6 0.8 13 73-85 42-54 (105)
433 3fyb_A Protein of unknown func 63.0 2.1 7.3E-05 31.5 0.8 13 73-85 41-53 (104)
434 3sre_A PON1, serum paraoxonase 63.0 62 0.0021 30.5 11.2 106 378-488 51-183 (355)
435 2g8s_A Glucose/sorbosone dehyd 62.8 1E+02 0.0034 28.8 14.1 75 418-493 263-347 (353)
436 1mm2_A MI2-beta; PHD, zinc fin 62.7 5.3 0.00018 26.9 2.7 44 50-95 7-56 (61)
437 2l5u_A Chromodomain-helicase-D 62.4 5.4 0.00018 26.9 2.7 43 50-94 9-57 (61)
438 1w6s_A Methanol dehydrogenase 62.4 18 0.00062 37.1 7.9 47 446-494 451-497 (599)
439 1z60_A TFIIH basal transcripti 62.3 6 0.0002 26.5 2.8 40 53-92 16-58 (59)
440 1x4u_A Zinc finger, FYVE domai 62.2 5.8 0.0002 28.8 3.0 31 52-82 14-48 (84)
441 2dfs_A Myosin-5A; myosin-V, in 61.5 77 0.0027 34.9 13.0 25 193-217 1019-1043(1080)
442 2xjy_A Rhombotin-2; oncoprotei 60.8 2.5 8.5E-05 33.6 0.9 48 51-98 28-78 (131)
443 2xqn_T Testin, TESS; metal-bin 60.2 4 0.00014 32.1 2.0 45 52-98 30-75 (126)
444 2oqq_A Transcription factor HY 59.8 26 0.0009 21.2 6.5 30 184-213 11-40 (42)
445 2k16_A Transcription initiatio 59.6 2.7 9.2E-05 29.8 0.8 48 50-97 16-70 (75)
446 2ism_A Putative oxidoreductase 59.4 70 0.0024 29.9 11.1 107 379-488 204-333 (352)
447 4gq2_M Nucleoporin NUP120; bet 59.2 55 0.0019 35.6 11.4 32 377-408 236-267 (950)
448 2xzh_A Clathrin heavy chain 1; 59.0 1.2E+02 0.0041 28.4 12.4 94 382-488 72-170 (365)
449 1bpo_A Protein (clathrin); cla 58.2 1.4E+02 0.0049 29.1 16.2 117 374-493 196-324 (494)
450 1wfk_A Zinc finger, FYVE domai 57.6 3.9 0.00013 30.0 1.4 31 52-82 9-43 (88)
451 3pwf_A Rubrerythrin; non heme 57.6 3.5 0.00012 34.6 1.3 10 87-96 154-163 (170)
452 1cru_A Protein (soluble quinop 57.5 77 0.0026 31.0 11.3 20 466-487 226-245 (454)
453 3t7l_A Zinc finger FYVE domain 57.1 4.1 0.00014 30.1 1.4 32 52-83 20-55 (90)
454 3amr_A 3-phytase; beta-propell 56.8 88 0.003 29.4 10.9 90 397-491 98-201 (355)
455 4ayb_P DNA-directed RNA polyme 56.6 4.3 0.00015 25.4 1.2 29 67-97 6-34 (48)
456 2lv9_A Histone-lysine N-methyl 56.0 6 0.0002 29.7 2.2 43 51-94 27-75 (98)
457 2yql_A PHD finger protein 21A; 55.9 2.5 8.4E-05 28.0 0.1 43 50-94 7-55 (56)
458 1wfl_A Zinc finger protein 216 55.9 6.4 0.00022 27.5 2.1 26 52-77 25-51 (74)
459 1t3j_A Mitofusin 1; coiled coi 55.6 37 0.0013 25.1 6.3 50 168-217 32-81 (96)
460 1t2k_D Cyclic-AMP-dependent tr 55.3 43 0.0015 22.3 6.7 23 188-210 34-56 (61)
461 1kd8_B GABH BLL, GCN4 acid bas 55.1 29 0.00098 20.2 4.6 27 187-213 5-31 (36)
462 2dgc_A Protein (GCN4); basic d 54.7 46 0.0016 22.4 6.5 35 178-212 25-59 (63)
463 1dvp_A HRS, hepatocyte growth 54.4 5 0.00017 35.2 1.8 32 51-82 160-195 (220)
464 1fxk_C Protein (prefoldin); ar 53.9 55 0.0019 25.7 7.9 43 168-210 87-129 (133)
465 3r2p_A Apolipoprotein A-I; amp 53.5 81 0.0028 26.5 9.3 41 176-216 126-167 (185)
466 3oja_A Leucine-rich immune mol 53.3 1.7E+02 0.0059 28.6 13.3 22 192-213 444-465 (487)
467 2e6r_A Jumonji/ARID domain-con 52.4 4.4 0.00015 30.0 0.9 46 49-94 13-65 (92)
468 2p22_A Suppressor protein STP2 52.3 73 0.0025 26.5 8.4 39 171-209 51-89 (174)
469 3s84_A Apolipoprotein A-IV; fo 52.0 1.3E+02 0.0046 27.0 12.5 16 176-191 103-118 (273)
470 2lbm_A Transcriptional regulat 51.3 10 0.00035 30.5 3.0 43 52-94 63-116 (142)
471 2cup_A Skeletal muscle LIM-pro 51.1 6.7 0.00023 29.3 1.8 45 52-98 33-78 (101)
472 3zyq_A Hepatocyte growth facto 51.0 9.2 0.00031 33.7 3.0 31 52-82 164-198 (226)
473 1we9_A PHD finger family prote 50.8 3.5 0.00012 28.1 0.1 46 50-95 4-58 (64)
474 3c3f_A Alpha/beta peptide with 49.7 35 0.0012 19.5 4.3 24 189-212 7-30 (34)
475 3hnw_A Uncharacterized protein 49.7 97 0.0033 24.6 12.5 28 184-211 104-131 (138)
476 2xdj_A Uncharacterized protein 48.8 72 0.0024 22.9 10.1 35 180-214 24-58 (83)
477 3u5n_A E3 ubiquitin-protein li 48.7 8.1 0.00028 33.5 2.2 44 52-96 7-55 (207)
478 4emc_A Monopolin complex subun 48.5 89 0.0031 26.1 8.2 29 178-206 29-57 (190)
479 1m1j_A Fibrinogen alpha subuni 48.1 2E+02 0.0068 27.8 12.4 28 87-116 44-72 (491)
480 4g9i_A Hydrogenase maturation 48.0 11 0.00039 39.7 3.6 49 50-98 104-190 (772)
481 1wen_A Inhibitor of growth fam 48.0 18 0.0006 25.2 3.5 46 49-96 13-66 (71)
482 1hjb_A Ccaat/enhancer binding 47.8 77 0.0026 23.0 9.1 36 179-214 39-74 (87)
483 3o36_A Transcription intermedi 47.5 8.7 0.0003 32.6 2.2 44 52-96 4-52 (184)
484 4fla_A Regulation of nuclear P 47.3 1.1E+02 0.0038 24.7 12.6 44 168-211 99-142 (152)
485 1kd8_A GABH AIV, GCN4 acid bas 47.3 34 0.0011 19.9 3.8 26 188-213 6-31 (36)
486 1wfp_A Zinc finger (AN1-like) 47.1 16 0.00056 25.5 3.1 43 51-96 24-67 (74)
487 1wg2_A Zinc finger (AN1-like) 47.0 12 0.00041 25.4 2.3 43 52-97 15-58 (64)
488 3mq7_A Bone marrow stromal ant 46.7 94 0.0032 23.6 13.3 40 175-214 56-95 (121)
489 2l43_A N-teminal domain from h 46.6 4.7 0.00016 29.6 0.3 53 49-101 22-81 (88)
490 2jr6_A UPF0434 protein NMA0874 46.6 3.4 0.00012 28.6 -0.4 42 48-105 4-45 (68)
491 1ci6_A Transcription factor AT 46.6 64 0.0022 21.7 8.6 34 180-213 27-60 (63)
492 3zwu_A Alkaline phosphatase PH 46.3 2.5E+02 0.0086 28.5 13.8 59 427-487 477-548 (592)
493 4dzn_A Coiled-coil peptide CC- 46.2 35 0.0012 18.5 4.8 22 188-209 7-28 (33)
494 2jtn_A LIM domain-binding prot 46.1 11 0.00039 31.7 2.7 45 53-99 88-132 (182)
495 4gq2_M Nucleoporin NUP120; bet 46.0 20 0.00068 39.1 5.3 37 427-464 237-273 (950)
496 2l5g_B Putative uncharacterize 45.9 49 0.0017 20.1 5.1 28 188-215 7-34 (42)
497 1dx8_A Rubredoxin; electron tr 45.6 18 0.00063 25.0 3.2 39 51-95 6-49 (70)
498 1gmj_A ATPase inhibitor; coile 45.6 81 0.0028 22.6 9.1 21 192-212 53-73 (84)
499 1zbd_B Rabphilin-3A; G protein 45.5 7.1 0.00024 31.2 1.2 29 50-78 53-86 (134)
500 2js4_A UPF0434 protein BB2007; 45.4 3.7 0.00013 28.6 -0.4 44 45-104 1-44 (70)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.85 E-value=8.4e-21 Score=183.95 Aligned_cols=144 Identities=22% Similarity=0.283 Sum_probs=126.6
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|+.+++|++. ....+..+. +|...|++++|+|++.+|++|+.|++|++||++.+
T Consensus 173 spdg~~lasg~~dg~i~iwd~~---~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~------ 238 (321)
T 3ow8_A 173 SPDGKYLASGAIDGIINIFDIA---TGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA------ 238 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETT---TTEEEEEEC-----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC------
T ss_pred CCCCCEEEEEcCCCeEEEEECC---CCcEEEEEc-----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc------
Confidence 3456678899999999999984 234455555 89999999999999999999999999999999876
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.......+|...|.+++|+|+ +.+|++|+.||+|+|||+.++.++..+.+|...|++++|+| ++.+|++++.|++|+
T Consensus 239 -~~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~ 315 (321)
T 3ow8_A 239 -NLAGTLSGHASWVLNVAFCPD-DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIH 315 (321)
T ss_dssp -CEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEE
T ss_pred -ceeEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEE
Confidence 222334468889999999999 89999999999999999999999999999999999999999 999999999999998
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
|
T Consensus 316 v 316 (321)
T 3ow8_A 316 I 316 (321)
T ss_dssp E
T ss_pred E
Confidence 5
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=183.85 Aligned_cols=144 Identities=18% Similarity=0.263 Sum_probs=121.1
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
..++..+++|+.|+++++|++. ....+..+. +|.+.|++++|+|++. +|++++.|++|++||++++
T Consensus 136 spdg~~l~sgs~d~~i~iwd~~---~~~~~~~~~-----~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----- 202 (344)
T 4gqb_B 136 LSSGTQAVSGSKDICIKVWDLA---QQVVLSSYR-----AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP----- 202 (344)
T ss_dssp CTTSSEEEEEETTSCEEEEETT---TTEEEEEEC-----CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-----
T ss_pred CCCCCEEEEEeCCCeEEEEECC---CCcEEEEEc-----CcCCceEEEEecCCCCCceeeecccccccccccccc-----
Confidence 4567778999999999999984 335566665 8999999999999874 7899999999999999986
Q ss_pred CcCCCeeec---CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCC-CeEEEeeC
Q 048199 414 DVHCPVVEM---PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP-SMLVSGSD 489 (495)
Q Consensus 414 ~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g-~~l~s~s~ 489 (495)
.+...+ .+...+.+++|+|+++.+|++|+.||+|+|||+++++++.++.+|...|++++|+| ++ .+|+|||.
T Consensus 203 ---~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-~g~~~lasgs~ 278 (344)
T 4gqb_B 203 ---KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-HSVPFLASLSE 278 (344)
T ss_dssp ---SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS-SSSCCEEEEET
T ss_pred ---ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-CCCeEEEEEeC
Confidence 233322 34557899999998788999999999999999999999999999999999999999 76 68999999
Q ss_pred CCcEeC
Q 048199 490 DCKVLY 495 (495)
Q Consensus 490 D~~v~l 495 (495)
|++|+|
T Consensus 279 D~~i~v 284 (344)
T 4gqb_B 279 DCSLAV 284 (344)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 999985
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.84 E-value=2.5e-20 Score=182.12 Aligned_cols=142 Identities=14% Similarity=0.154 Sum_probs=122.9
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..+++|+.|+++++|++.. ...+..+. +|...|.+++|+|++++|++|+.|++|++||++.+
T Consensus 194 ~~~~~l~sg~~d~~v~~wd~~~---~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~------- 258 (340)
T 1got_B 194 PDTRLFVSGACDASAKLWDVRE---GMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------- 258 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTT---CSEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred CCCCEEEEEeCCCcEEEEECCC---CeeEEEEc-----CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-------
Confidence 4556688999999999999853 23344454 89999999999999999999999999999999876
Q ss_pred CCCeeecCC---CCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 416 HCPVVEMPT---RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 416 ~~~~~~~~~---~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
..+..+.+ ...|.+++|+|+ +.+|++|+.||.|++||+.++..+..+.+|...|++++|+| +|.+|+|||.|++
T Consensus 259 -~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~ 335 (340)
T 1got_B 259 -QELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSF 335 (340)
T ss_dssp -EEEEEECCTTCCSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSC
T ss_pred -cEEEEEccCCcccceEEEEECCC-CCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCcc
Confidence 22333333 347999999999 99999999999999999999999999999999999999999 9999999999999
Q ss_pred EeC
Q 048199 493 VLY 495 (495)
Q Consensus 493 v~l 495 (495)
|+|
T Consensus 336 i~i 338 (340)
T 1got_B 336 LKI 338 (340)
T ss_dssp EEE
T ss_pred EEe
Confidence 985
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.83 E-value=3.3e-20 Score=178.29 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=124.9
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
.+++..+++|+.|+++++|++. ....+..+. +|...|.++.|+|++++|++|+.|++|++||+.++
T Consensus 22 sp~~~~l~s~~~dg~v~lWd~~---~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~------ 87 (304)
T 2ynn_A 22 HPTEPWVLTTLYSGRVELWNYE---TQVEVRSIQ-----VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG------ 87 (304)
T ss_dssp CSSSSEEEEEETTSEEEEEETT---TTEEEEEEE-----CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC------
T ss_pred CCCCCEEEEEcCCCcEEEEECC---CCceeEEee-----ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC------
Confidence 3566778899999999999984 334455555 78899999999999999999999999999999987
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
.......+|...|++++|+|+ +.+|++|+.||+|++||++++ .....+.+|...|++++|+|.++.+|++|+.|++|
T Consensus 88 -~~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 88 -EKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp -CEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred -cEEEEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 223334478899999999999 899999999999999999887 45577899999999999999667899999999999
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
+|
T Consensus 166 ~i 167 (304)
T 2ynn_A 166 KV 167 (304)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.83 E-value=6.5e-20 Score=179.42 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=122.0
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCC
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
..+.....+++|+.|++|+||++............. .+|.+.|++++|+|++++|++|+.|++|++||+.++
T Consensus 88 ~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~----~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~---- 159 (344)
T 4gqb_B 88 LTWVGERGILVASDSGAVELWELDENETLIVSKFCK----YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ---- 159 (344)
T ss_dssp EEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEE----ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----
T ss_pred EEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccc----cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----
Confidence 344445668899999999999985433222222211 289999999999999999999999999999999987
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc--cccCcEEEEEeecCCCCeEEEeeCC
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE--EHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
.......+|.+.|++++|+|++..+|++|+.||+|+|||+++++.+..+. .|...+.+++|+|.++.+|++|+.|
T Consensus 160 ---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 160 ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp ---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred ---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 22233446889999999999956789999999999999999999888775 4566799999999667889999999
Q ss_pred CcEeC
Q 048199 491 CKVLY 495 (495)
Q Consensus 491 ~~v~l 495 (495)
|+|+|
T Consensus 237 g~v~~ 241 (344)
T 4gqb_B 237 GTVSL 241 (344)
T ss_dssp SEEEE
T ss_pred CcEEE
Confidence 99975
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.82 E-value=4.6e-20 Score=185.09 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=125.2
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|++++||++.. ...+..+. +|.+.|++++|+|++++|++|+.|++|++||+.+.
T Consensus 117 ~p~~~~l~s~s~Dg~i~vwd~~~---~~~~~~l~-----~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~------ 182 (410)
T 1vyh_C 117 HPVFSVMVSASEDATIKVWDYET---GDFERTLK-----GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF------ 182 (410)
T ss_dssp CSSSSEEEEEESSSCEEEEETTT---CCCCEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS------
T ss_pred cCCCCEEEEEeCCCeEEEEECCC---CcEEEEEe-----ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------
Confidence 34566789999999999999853 22344444 89999999999999999999999999999999875
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.......+|...|++++|+|+ +.+|++|+.|++|++||++++.++.++.+|...|.++.|++ ++.+|++|+.|++|+
T Consensus 183 -~~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 183 -ECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVR 259 (410)
T ss_dssp -CEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred -ceeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEE
Confidence 122223368889999999999 89999999999999999999999999999999999999999 999999999999997
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
+
T Consensus 260 v 260 (410)
T 1vyh_C 260 V 260 (410)
T ss_dssp E
T ss_pred E
Confidence 5
No 7
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-19 Score=176.77 Aligned_cols=151 Identities=13% Similarity=0.211 Sum_probs=114.6
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
..+++|+.|+++++|++.. .....+..+.. .+|...|++++|+|++++|++|+.|++|+|||+.............
T Consensus 25 ~~las~~~D~~i~lw~~~~-~~~~~~~~~~~---~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 25 GILATGSTDRKIKLVSVKY-DDFTLIDVLDE---TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp TEEEEEESSSCEEEEECSS-SCCEEEEEECT---TCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEE
T ss_pred CEEEEEcCCCEEEEEEecC-CCeEEEEEEec---CCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeE
Confidence 3788999999999999842 22333444422 1499999999999999999999999999999996531100000111
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC----CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT----QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~----~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
....+|...|++++|+|+ +.+|++|+.|++|+|||++. ..++..+.+|...|++++|+| ++.+|+||+.|++|+
T Consensus 101 ~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~ 178 (330)
T 2hes_X 101 AIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVR 178 (330)
T ss_dssp EEEC----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEE
T ss_pred EEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEE
Confidence 223468889999999999 99999999999999999953 246778899999999999999 999999999999998
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
|
T Consensus 179 i 179 (330)
T 2hes_X 179 I 179 (330)
T ss_dssp E
T ss_pred E
Confidence 5
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=177.89 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=121.0
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
+..+++|+.|+++++|++.. ...+..+. +|...|.+++|+|++.+|++|+.|++|++||++.. .
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~---~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~--------~ 273 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRS---GQCVQAFE-----THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD--------R 273 (354)
T ss_dssp CCEEEEEETTSCEEEEETTT---CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------E
T ss_pred CCEEEEEeCCCeEEEEECCC---CcEEEEec-----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC--------c
Confidence 45788999999999999843 23444454 79999999999999999999999999999999875 2
Q ss_pred CeeecC---CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 418 PVVEMP---TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 418 ~~~~~~---~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+..+. +...+.+++|+|+ +.+|++|+.|++|+|||+.++..+..+.+|...|++++|+| +|.+|+|||.|++|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~-g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 274 EVAIYSKESIIFGASSVDFSLS-GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLR 351 (354)
T ss_dssp EEEEECCTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred EEEEEcCCCcccceeEEEEeCC-CCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEE
Confidence 222222 2346899999999 99999999999999999999999999999999999999999 999999999999998
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
|
T Consensus 352 v 352 (354)
T 2pbi_B 352 V 352 (354)
T ss_dssp E
T ss_pred e
Confidence 5
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.81 E-value=3.4e-19 Score=171.15 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=122.0
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
..++..+++|+.|+++++|++.. .......+. +|...|.+++|+| ++.+|++|+.|++|++||+.....
T Consensus 106 ~~~~~~l~sgs~D~~v~lWd~~~--~~~~~~~~~-----~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--- 175 (304)
T 2ynn_A 106 HPTKPYVLSGSDDLTVKLWNWEN--NWALEQTFE-----GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--- 175 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEEGGG--TTEEEEEEC-----CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC---
T ss_pred cCCCCEEEEECCCCeEEEEECCC--Ccchhhhhc-----ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc---
Confidence 34556788999999999999853 223333444 8999999999999 678999999999999999987511
Q ss_pred CcCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.......+...+..+.|+|. ++.+|++|+.||+|+|||++++.++..+.+|...|.+++|+| ++.+|+||+.||+
T Consensus 176 ---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 176 ---NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGT 251 (304)
T ss_dssp ---SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred ---cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCe
Confidence 11222345678999999873 267999999999999999999999999999999999999999 9999999999999
Q ss_pred EeC
Q 048199 493 VLY 495 (495)
Q Consensus 493 v~l 495 (495)
|+|
T Consensus 252 i~i 254 (304)
T 2ynn_A 252 LKI 254 (304)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=177.40 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=122.4
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
+..++..+++|+.|++++||++... .......+. .+|...|++++|+|++++|++|+.|++|++||+....
T Consensus 24 ~sp~g~~las~~~D~~i~iw~~~~~-~~~~~~~~~----~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~---- 94 (345)
T 3fm0_A 24 WNPAGTLLASCGGDRRIRIWGTEGD-SWICKSVLS----EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD---- 94 (345)
T ss_dssp ECTTSSCEEEEETTSCEEEEEEETT-EEEEEEEEC----SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-----
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCC-cceeeeeec----cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC----
Confidence 4456778899999999999997421 111112222 2799999999999999999999999999999988651
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc---ceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ---SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
........+|...|++++|+|+ +.+|++|+.|++|++||+.++. ++..+.+|...|.+++|+| ++.+|++|+.|
T Consensus 95 -~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d 171 (345)
T 3fm0_A 95 -FECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYD 171 (345)
T ss_dssp -EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETT
T ss_pred -eEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCC
Confidence 1112233468889999999999 9999999999999999998763 4677889999999999999 99999999999
Q ss_pred CcEeC
Q 048199 491 CKVLY 495 (495)
Q Consensus 491 ~~v~l 495 (495)
++|+|
T Consensus 172 ~~i~~ 176 (345)
T 3fm0_A 172 DTVKL 176 (345)
T ss_dssp SCEEE
T ss_pred CcEEE
Confidence 99975
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=174.33 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=124.5
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|+.+.+|++.. ......+. .|...|.+++|+|++++|++|+.|++|++||+.++
T Consensus 131 spdg~~l~~g~~dg~v~i~~~~~---~~~~~~~~-----~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~------ 196 (321)
T 3ow8_A 131 SPDSQYLATGTHVGKVNIFGVES---GKKEYSLD-----TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG------ 196 (321)
T ss_dssp CTTSSEEEEECTTSEEEEEETTT---CSEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------
T ss_pred CCCCCEEEEEcCCCcEEEEEcCC---CceeEEec-----CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC------
Confidence 45567788899999999999853 23344444 67889999999999999999999999999999886
Q ss_pred cCCCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 415 VHCPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 415 ~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
..+. ..+|...|++++|+|+ +.+|++|+.||+|+|||++++..+..+.+|...|.+++|+| ++.+|++|+.|++|
T Consensus 197 --~~~~~~~~h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 197 --KLLHTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSV 272 (321)
T ss_dssp --EEEEEECCCSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred --cEEEEEcccCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcE
Confidence 2233 3357888999999999 89999999999999999999999999999999999999999 99999999999999
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
+|
T Consensus 273 ~i 274 (321)
T 3ow8_A 273 KV 274 (321)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.7e-19 Score=175.42 Aligned_cols=151 Identities=23% Similarity=0.332 Sum_probs=117.6
Q ss_pred cccccCcccchhhHHhhhhhhhccc----CceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccccc
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYS----RLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN 410 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~----~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~ 410 (495)
.+++..+++|+.|.+++||+..... ....+..+. +|.+.|++++|+|++++|++|+.|++|++||+.....
T Consensus 67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-----~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-----GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC
T ss_pred CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-----CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC
Confidence 3456678899999999999974211 123344444 8999999999999999999999999999999954311
Q ss_pred CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC--cceeecccccCcEEEEEeecCC--CCeEEE
Q 048199 411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ--QSVMEYEEHEKRAWSVDFSRTE--PSMLVS 486 (495)
Q Consensus 411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~--g~~l~s 486 (495)
.. .......+|...|++++|+|+ +.+|++|+.|++|++||..++ .++..+.+|...|++++|+| + +.+|+|
T Consensus 142 ~~---~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s 216 (330)
T 2hes_X 142 EY---ECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCS 216 (330)
T ss_dssp CC---EEEEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEE
T ss_pred Ce---EEEEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEE
Confidence 00 111223468889999999999 899999999999999999876 67889999999999999999 6 678999
Q ss_pred eeCCCcEeC
Q 048199 487 GSDDCKVLY 495 (495)
Q Consensus 487 ~s~D~~v~l 495 (495)
|+.|++|+|
T Consensus 217 ~s~D~~v~i 225 (330)
T 2hes_X 217 GSDDSTVRV 225 (330)
T ss_dssp EETTSCEEE
T ss_pred EeCCCeEEE
Confidence 999999985
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=176.83 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=123.8
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|++++||++.. .....+..+. +|.+.|.+++|+|++++|++|+.|++|++||+.....
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~-~~~~~~~~~~-----~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~---- 139 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQ-DDFECVTTLE-----GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE---- 139 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECC-C-EEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC----
T ss_pred CCCCCEEEEEECCCcEEEEEccC-CCeEEEEEcc-----CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC----
Confidence 34667789999999999999742 2333455555 8999999999999999999999999999999987510
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--ceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.........|...|.+++|+|+ +.+|++|+.|++|++||.+++. +...+.+|...|++++|+| +|.+|++|+.|++
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRT 217 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred eEEEEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCe
Confidence 0011223467889999999999 8999999999999999998764 5578999999999999999 9999999999999
Q ss_pred EeC
Q 048199 493 VLY 495 (495)
Q Consensus 493 v~l 495 (495)
|+|
T Consensus 218 v~i 220 (345)
T 3fm0_A 218 VRI 220 (345)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.80 E-value=1.1e-19 Score=180.28 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=118.8
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
++..+++|+.|+++++||+.... ..+..+. +|.+.|++++|+|++.+|++|+.|++|++||++++.....-..
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITS--RAVRTYH-----GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTC--CCCEEEC-----CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred CCCEEEEEECCCeEEEEECCCCC--cceEEEC-----CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 45678899999999999985221 2334444 8999999999999999999999999999999998611000000
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec----ccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY----EEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~----~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.......+...+++++|+|+ +.+|++|+.||.|++||+.++..+..+ .+|.+.|++++|+| +|.+|+|||.|++
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSIS-GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKN 367 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSS-SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSC
T ss_pred cccccccccCceEEEEECCC-CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCC
Confidence 00000112234899999999 999999999999999999998887776 68999999999999 9999999999999
Q ss_pred EeC
Q 048199 493 VLY 495 (495)
Q Consensus 493 v~l 495 (495)
|+|
T Consensus 368 i~i 370 (380)
T 3iz6_a 368 LKI 370 (380)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.80 E-value=4.8e-19 Score=171.35 Aligned_cols=144 Identities=13% Similarity=0.161 Sum_probs=125.1
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|+++++|++.. ...+..+. +|.+.|.+++|+|++.+|++|+.|++|++||+...
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~---~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------ 139 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVAT---GETYQRFV-----GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------ 139 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTT---TEEEEEEE-----CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC------
T ss_pred CCCCCEEEEEeCCCEEEEEECCC---CCeeEEEc-----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------
Confidence 34567788999999999999842 34455555 89999999999999999999999999999999754
Q ss_pred cCCCeeecCCCCCeEEEEEcCC-----CCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKF-----SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~-----~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
......+|...+.++.|+|. ++.+|++|+.|+.|++||++++.....+.+|...|++++|+| ++.+|++|+.
T Consensus 140 --~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~ 216 (319)
T 3frx_A 140 --CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGK 216 (319)
T ss_dssp --EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEET
T ss_pred --eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeC
Confidence 33445578889999999985 245899999999999999999999999999999999999999 9999999999
Q ss_pred CCcEeC
Q 048199 490 DCKVLY 495 (495)
Q Consensus 490 D~~v~l 495 (495)
||+|+|
T Consensus 217 dg~i~i 222 (319)
T 3frx_A 217 DGEIML 222 (319)
T ss_dssp TCEEEE
T ss_pred CCeEEE
Confidence 999985
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.80 E-value=2.5e-19 Score=179.67 Aligned_cols=143 Identities=18% Similarity=0.244 Sum_probs=124.2
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--------------------CCEEEEEe
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--------------------DQLFATAG 395 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--------------------~~~l~s~s 395 (495)
.++..+++|+.|+++++|++.. ......+. +|...|.+++|+|+ +.+|++|+
T Consensus 244 ~~g~~l~s~s~D~~v~vwd~~~---~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 244 QDGTLIASCSNDQTVRVWVVAT---KECKAELR-----EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp TTSSEEEEEETTSCEEEEETTT---CCEEEEEC-----CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCC---CceeeEec-----CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 3456688999999999999843 23344444 89999999999996 67899999
Q ss_pred CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEE
Q 048199 396 VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVD 475 (495)
Q Consensus 396 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~ 475 (495)
.|++|++||+.++ .......+|...|++++|+|+ +.+|++|+.||+|++||+.++.++..+.+|...|++++
T Consensus 316 ~D~~i~iwd~~~~-------~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~ 387 (410)
T 1vyh_C 316 RDKTIKMWDVSTG-------MCLMTLVGHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 387 (410)
T ss_dssp TTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECSS-SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred CCCeEEEEECCCC-------ceEEEEECCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence 9999999999986 223334478889999999999 89999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEeeCCCcEeC
Q 048199 476 FSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 476 ~~~~~g~~l~s~s~D~~v~l 495 (495)
|+| ++.+|+|||.|++|+|
T Consensus 388 ~~~-~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 388 FHK-TAPYVVTGSVDQTVKV 406 (410)
T ss_dssp ECS-SSSCEEEEETTSEEEE
T ss_pred EcC-CCCEEEEEeCCCcEEE
Confidence 999 9999999999999985
No 17
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.80 E-value=5.9e-19 Score=168.87 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=125.4
Q ss_pred CCCCccccccccc---cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCC
Q 048199 324 QPHTKQESDKNII---HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSR 398 (495)
Q Consensus 324 ~~~~~~~~~~~~~---~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~ 398 (495)
..|...+....+. .+..+++|+.|++++||++.. .....+..+. +|...|.+++|+|+ +.+|++++.|+
T Consensus 50 ~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~-~~~~~~~~~~-----~h~~~v~~v~~~p~~~g~~l~s~s~d~ 123 (297)
T 2pm7_B 50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN-GRWSQIAVHA-----VHSASVNSVQWAPHEYGPMLLVASSDG 123 (297)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS-SCBCCCEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC-CceEEEEEee-----cCCCceeEEEeCcCCCCcEEEEEECCC
Confidence 3444444444432 256789999999999999852 2222333333 78999999999997 88999999999
Q ss_pred cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCC------------CCEEEEecCCCcEEEEeCCCCc----cee
Q 048199 399 RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFS------------KNRIASSDYEGIVTVWDVTTQQ----SVM 462 (495)
Q Consensus 399 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~------------~~~l~sg~~dg~v~iwd~~~~~----~~~ 462 (495)
+|++||++.... .......+|...|++++|+|+. +.+|++|+.|++|+|||++++. ...
T Consensus 124 ~v~~wd~~~~~~-----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~ 198 (297)
T 2pm7_B 124 KVSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198 (297)
T ss_dssp EEEEEEBCSSSC-----BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred cEEEEEecCCCc-----eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE
Confidence 999999987510 1123445788899999999972 4699999999999999998766 567
Q ss_pred ecccccCcEEEEEeecCC---CCeEEEeeCCCcEeC
Q 048199 463 EYEEHEKRAWSVDFSRTE---PSMLVSGSDDCKVLY 495 (495)
Q Consensus 463 ~~~~h~~~v~~v~~~~~~---g~~l~s~s~D~~v~l 495 (495)
.+.+|...|++++|+| + +.+|+|||.|++|+|
T Consensus 199 ~l~~H~~~V~~v~~sp-~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 199 TLEGHSDWVRDVAWSP-TVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp EECCCSSCEEEEEECC-CCSSSEEEEEEETTSCEEE
T ss_pred EecCCCCceEEEEECC-CCCCceEEEEEECCCcEEE
Confidence 8899999999999999 7 489999999999985
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.80 E-value=8e-19 Score=171.34 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=122.6
Q ss_pred cccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccccc
Q 048199 331 SDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN 410 (495)
Q Consensus 331 ~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~ 410 (495)
....+.+...+++|+.|+++++|++.. ...+..+. +|.+.|.+++|+|++.+|++|+.|++|++||++++
T Consensus 147 ~~~~~~~~~~l~s~s~d~~i~~wd~~~---~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-- 216 (340)
T 1got_B 147 SCCRFLDDNQIVTSSGDTTCALWDIET---GQQTTTFT-----GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-- 216 (340)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTT---TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--
T ss_pred EEEEECCCCcEEEEECCCcEEEEECCC---CcEEEEEc-----CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--
Confidence 333344455688899999999999842 34455555 89999999999999999999999999999999886
Q ss_pred CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc--ccCcEEEEEeecCCCCeEEEee
Q 048199 411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~~l~s~s 488 (495)
.......+|...|++++|+|+ +.+|++|+.||+|++||++++..+..+.. +...|.+++|+| +|.+|++|+
T Consensus 217 -----~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~ 289 (340)
T 1got_B 217 -----MCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGY 289 (340)
T ss_dssp -----SEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEE
T ss_pred -----eeEEEEcCCcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEEC
Confidence 222233468889999999999 89999999999999999999887777653 335799999999 999999999
Q ss_pred CCCcEeC
Q 048199 489 DDCKVLY 495 (495)
Q Consensus 489 ~D~~v~l 495 (495)
.|+.|+|
T Consensus 290 ~d~~i~v 296 (340)
T 1got_B 290 DDFNCNV 296 (340)
T ss_dssp TTSEEEE
T ss_pred CCCeEEE
Confidence 9999875
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.79 E-value=9.5e-19 Score=168.35 Aligned_cols=144 Identities=21% Similarity=0.266 Sum_probs=124.9
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|+.+++|+... ......+. +|...|.+++|+|++++|++++.|++|++||+.++
T Consensus 32 s~~~~~l~s~~~dg~i~iw~~~~---~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~------ 97 (312)
T 4ery_A 32 SPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG------ 97 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT---CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------
T ss_pred CCCCCEEEEeeCCCeEEEEeCCC---cccchhhc-----cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC------
Confidence 34566788999999999999742 23344444 79999999999999999999999999999999886
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
........|...|.+++|+|+ +.+|++|+.||.|++||++++..+..+.+|...|.+++|+| ++.+|++|+.|+.|+
T Consensus 98 -~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 98 -KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCR 174 (312)
T ss_dssp -CEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred -cEEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEE
Confidence 222233468889999999999 89999999999999999999999999999999999999999 999999999999987
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
+
T Consensus 175 ~ 175 (312)
T 4ery_A 175 I 175 (312)
T ss_dssp E
T ss_pred E
Confidence 5
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.79 E-value=1e-18 Score=174.24 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=124.2
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|+++++|++.. ...+..+. +|...|++++|+|++.+|++++.|++|++||+.++
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~---~~~~~~~~-----~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~------ 197 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIEN---RKIVMILQ-----GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG------ 197 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT---TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------
T ss_pred CCCCCEEEEEcCCCeEEEEECCC---CcEEEEEc-----cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC------
Confidence 34567788999999999999842 34455555 89999999999999999999999999999999886
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-------ccccCcEEEEEeecCCCCeEEEe
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-------EEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-------~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
.....+.+...+.+++|+|.++.+|++|+.||+|++||++++..+..+ .+|...|++++|+| +|.+|++|
T Consensus 198 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~ 274 (393)
T 1erj_A 198 --QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSG 274 (393)
T ss_dssp --EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEE
T ss_pred --eeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEE
Confidence 334445567789999999944999999999999999999998887766 67999999999999 99999999
Q ss_pred eCCCcEeC
Q 048199 488 SDDCKVLY 495 (495)
Q Consensus 488 s~D~~v~l 495 (495)
+.|++|+|
T Consensus 275 s~d~~v~~ 282 (393)
T 1erj_A 275 SLDRSVKL 282 (393)
T ss_dssp ETTSEEEE
T ss_pred eCCCEEEE
Confidence 99999975
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.79 E-value=7.3e-19 Score=172.92 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=117.0
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
..+++++.|+++++|++..... +..+ .+..|...|.+++|+|+ +.+|++|+.|+.|++||+.++ ..
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~---~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-------~~ 261 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKP---ATRI---DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-------DS 261 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSC---BCBC---CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-------GG
T ss_pred ceeeeeccCCceEEEECCCCce---eeee---eeccccccccchhhhhcccceEEEeecccceeEEECCCC-------cE
Confidence 3577899999999999853221 1111 12257788999999996 568999999999999999987 23
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
......|...|++++|+|+++.+|++|+.||+|+|||+++++.+..+ +|.+.|++|+|+|.++.+|+|||.||+|++
T Consensus 262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 262 AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 33444688899999999995678999999999999999998887665 799999999999867899999999999985
No 22
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.9e-19 Score=185.55 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=120.3
Q ss_pred ccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEE--EEccCC-CEEEEEeCCCcEEEEEcccc
Q 048199 332 DKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSI--EFDRDD-QLFATAGVSRRIKVFDFASV 408 (495)
Q Consensus 332 ~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~~p~~-~~l~s~s~d~~i~vwd~~~~ 408 (495)
...+.+...+++|+.|+++++|++... ..+...+. +|.+.|++| .|+|++ .+|+|||.|++|+|||++++
T Consensus 271 sv~~s~~~~lasgs~DgtV~lWD~~~~--~~~~~~~~-----~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 271 TFDFLSPTTVVCGFKNGFVAEFDLTDP--EVPSFYDQ-----VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp EEEESSSSEEEEEETTSEEEEEETTBC--SSCSEEEE-----CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred EEEecCCCeEEEEeCCCEEEEEECCCC--CCceEEee-----cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 333334457899999999999998532 12233344 899999999 567887 89999999999999999886
Q ss_pred ccCCCCcCCCeeecCCC--CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199 409 VNEPADVHCPVVEMPTR--SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS 486 (495)
Q Consensus 409 ~~~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s 486 (495)
.......+|. ..|++++|+|+ +..|++++.|++|++||++++.++.++.+|.+.|++|+|+| +|.+|+|
T Consensus 344 -------~~~~~~~~~~~~~~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l~S 414 (524)
T 2j04_B 344 -------ATTKTTVSRFRGSNLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLA 414 (524)
T ss_dssp -------HHHCEEEEECSCCSCCCEEEETT-TTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBCEE
T ss_pred -------CcccccccccccCcccceEeCCC-cCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeEEE
Confidence 1111222232 34789999999 88999999999999999999999999999999999999999 9999999
Q ss_pred eeCCCcEeC
Q 048199 487 GSDDCKVLY 495 (495)
Q Consensus 487 ~s~D~~v~l 495 (495)
||.|++|+|
T Consensus 415 gs~Dgtv~l 423 (524)
T 2j04_B 415 GSADGSLII 423 (524)
T ss_dssp EETTTEEEC
T ss_pred EECCCEEEE
Confidence 999999986
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.79 E-value=9.9e-19 Score=171.98 Aligned_cols=148 Identities=16% Similarity=0.233 Sum_probs=123.4
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
..++..+++|+.|+++++|++. ....+..+. +|.+.|++++|+|++. +|++++.|++|++||++++..
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~---~~~~~~~~~-----~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~--- 216 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLS---QKAVLKSYN-----AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP--- 216 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETT---TTEEEEEEC-----CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC---
T ss_pred CCCCCEEEEEeCCCeEEEEECC---CCcEEEEEc-----CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce---
Confidence 4466778999999999999984 334555555 8999999999999875 889999999999999988611
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
........+...+.+++|+|+++.+|++|+.|+.|++||++++..+..+.+|...|++++|+|.++.+|+||+.|++|
T Consensus 217 --~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 217 --ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp --BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred --eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 111122345667999999999778999999999999999999999999999999999999999334689999999999
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
+|
T Consensus 295 ~i 296 (357)
T 4g56_B 295 AV 296 (357)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 24
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.78 E-value=1.6e-18 Score=183.01 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=118.0
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPV 419 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 419 (495)
.+++|+.|+++++|+.. ....+..+. +|.+.|++++|+|++++|++++.|++|++||+.++.....-.....
T Consensus 162 ~l~s~s~D~~v~lwd~~---~~~~~~~l~-----~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGP---PFKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp EEEEEETTSCEEEEETT---TBEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred EEEEEeCCCeEEEEECC---CCeEeeeec-----cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 48899999999999974 234455555 8999999999999999999999999999999987611000000001
Q ss_pred eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee-------------------------------------
Q 048199 420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM------------------------------------- 462 (495)
Q Consensus 420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~------------------------------------- 462 (495)
...+|.+.|++++|+|+ +.+|++|+.|++|+|||+.++..+.
T Consensus 234 ~~~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~ 312 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 312 (611)
T ss_dssp SSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred cccccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC
Confidence 11268889999999999 9999999999999999998775443
Q ss_pred ------ecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 463 ------EYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 463 ------~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+.+|...|++++|+| +|.+|+|++.|++|++
T Consensus 313 ~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~ 350 (611)
T 1nr0_A 313 LGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINS 350 (611)
T ss_dssp TTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred CCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEE
Confidence 3457999999999999 9999999999999975
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.78 E-value=1.7e-18 Score=167.45 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=127.4
Q ss_pred CCCCcccccccccc--ccCcccchhhHHhhhhhhhcccC--ceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc
Q 048199 324 QPHTKQESDKNIIH--REGYNAGLADFQSVLTTFTRYSR--LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR 399 (495)
Q Consensus 324 ~~~~~~~~~~~~~~--~~~~~~g~~d~~~~lw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~ 399 (495)
.+|...+....+.. ...+++|+.|+++++|++..... ..++..+. +|...|.+++|+|++.+|++|+.|++
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-----CCcccEEEEEECCCCCEEEEEeCCCE
Confidence 44555555444432 35689999999999999853222 12344444 89999999999999999999999999
Q ss_pred EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecC
Q 048199 400 IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT 479 (495)
Q Consensus 400 i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 479 (495)
|++||+.++ .......+|...|.+++|+|+ +.+|++|+.|++|++||++ +.++..+.+|...|.++.|+|.
T Consensus 89 v~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 89 LRLWDVATG-------ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp EEEEETTTT-------EEEEEEECCSSCEEEEEECTT-SCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC
T ss_pred EEEEECCCC-------CeeEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccC
Confidence 999999987 222334578899999999999 8999999999999999996 6788899999999999999982
Q ss_pred -----CCCeEEEeeCCCcEeC
Q 048199 480 -----EPSMLVSGSDDCKVLY 495 (495)
Q Consensus 480 -----~g~~l~s~s~D~~v~l 495 (495)
++.+|++++.|+.|++
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~ 180 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKA 180 (319)
T ss_dssp ------CCEEEEEETTSCEEE
T ss_pred CCCCCCccEEEEEeCCCEEEE
Confidence 2348999999999975
No 26
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.78 E-value=2.3e-18 Score=169.12 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=123.6
Q ss_pred cccccCcccchhhHHhhhhhhhcccCc------------------------------eEEEEeec----------ccccc
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRL------------------------------RVIAELRH----------GDIFH 374 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~------------------------------~~~~~~~~----------~~~~~ 374 (495)
..++..+++|+.|+++++|+....... ..++.+.. ..+.+
T Consensus 73 s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~ 152 (354)
T 2pbi_B 73 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM 152 (354)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeec
Confidence 345667889999999999986432111 11222211 11236
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEE
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVW 453 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iw 453 (495)
|.+.|.++.|+|++..|++++.|++|++||+.++ .......+|...|.+++|+|+ .+.+|++|+.||+|++|
T Consensus 153 h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESG-------QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 8999999999999999999999999999999887 222233468889999999885 26899999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|++++.++..+.+|...|++++|+| ++.+|++|+.|++|+|
T Consensus 226 d~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~l 266 (354)
T 2pbi_B 226 DMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRL 266 (354)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred ECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEE
Confidence 9999999999999999999999999 9999999999999985
No 27
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.78 E-value=1.1e-19 Score=137.65 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=67.3
Q ss_pred ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
..+..+.+++.||||+++|+|||+++|||+||+.||.+|+....+||.||+++...+|.+|..+.++++.+..
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~ 78 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMR 78 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHH
Confidence 3446778899999999999999999999999999999999988899999999999999999999999998865
No 28
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.77 E-value=2.5e-18 Score=168.07 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=118.9
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..+++|+.|+++++|++.. ...+..+. +|.+.|++++|+|++++|++++.|++|++||+.....
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~---~~~~~~~~-----~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~----- 152 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRT---GTTYKRFV-----GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK----- 152 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTS---SCEEEEEE-----CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-----
T ss_pred CCCCEEEEEcCCCcEEEEECCC---CcEEEEEc-----CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-----
Confidence 3456678999999999999853 23445555 8999999999999999999999999999999974300
Q ss_pred CCCeeecCCCCCeEEEEEcCCC---------CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEE
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFS---------KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS 486 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~---------~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s 486 (495)
........|...|.+++|+|+. +.+|++|+.||+|++|| ..+.....+.+|...|++++|+| +|.+|++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s 230 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISP-NGKYIAT 230 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECT-TSSEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECC-CCCEEEE
Confidence 0001112577789999999983 16899999999999999 45677788999999999999999 9999999
Q ss_pred eeCCCcEeC
Q 048199 487 GSDDCKVLY 495 (495)
Q Consensus 487 ~s~D~~v~l 495 (495)
|+.|+.|+|
T Consensus 231 gs~dg~v~i 239 (343)
T 2xzm_R 231 GGKDKKLLI 239 (343)
T ss_dssp EETTCEEEE
T ss_pred EcCCCeEEE
Confidence 999999975
No 29
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.77 E-value=1.4e-18 Score=171.53 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=114.8
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC----cEEEEEcccccc
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR----RIKVFDFASVVN 410 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~----~i~vwd~~~~~~ 410 (495)
.+++..+++++++..+.+|... .... .... ..+|...|++++|+|++.++++++.|+ ++++|++.....
T Consensus 185 spdg~~l~s~s~~~~~~~~~~~--~~~~-~~~~----~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~ 257 (365)
T 4h5i_A 185 STDGKVVAYITGSSLEVISTVT--GSCI-ARKT----DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT 257 (365)
T ss_dssp CTTSSEEEEECSSCEEEEETTT--CCEE-EEEC----CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred ccCCceEEeccceeEEEEEecc--Ccce-eeee----cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence 3456667777766555444432 1111 1111 226889999999999999999999887 688888876511
Q ss_pred CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-ccccCcEEEEEeecCCCCeEEEeeC
Q 048199 411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.. ........|...|++++|+|+ +.+|++|+.|++|+|||+.+++++..+ .+|...|++|+|+| ||.+|||||.
T Consensus 258 ~~---~~~~~~~~~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~ 332 (365)
T 4h5i_A 258 SV---LRSKQVTNRFKGITSMDVDMK-GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP-DSTYVASVSA 332 (365)
T ss_dssp EE---EEEEEEESSCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-TSCEEEEEET
T ss_pred cc---eeeeeecCCCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-CCCEEEEEeC
Confidence 00 011123467788999999999 999999999999999999999999875 79999999999999 9999999999
Q ss_pred CCcEeC
Q 048199 490 DCKVLY 495 (495)
Q Consensus 490 D~~v~l 495 (495)
|++|||
T Consensus 333 D~tvrv 338 (365)
T 4h5i_A 333 ANTIHI 338 (365)
T ss_dssp TSEEEE
T ss_pred CCeEEE
Confidence 999986
No 30
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.77 E-value=2.7e-19 Score=139.00 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=68.1
Q ss_pred ccccCCCCccccccccchhhhccccCCC-CccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHh
Q 048199 44 VGVSELDKDMLCPICMQIIKEAFLTACG-HSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSAR 117 (495)
Q Consensus 44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CG-H~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~ 117 (495)
.....+.+++.||||+++|+|||+++|| |+||+.||++||....+||+||+++...+|.+|..+.++++.+...
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHH
Confidence 3446778899999999999999999999 9999999999999888999999999999999999999999988653
No 31
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.77 E-value=1.1e-18 Score=166.16 Aligned_cols=143 Identities=14% Similarity=0.172 Sum_probs=105.0
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEE------------EEEeCCCcEEEEEc
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLF------------ATAGVSRRIKVFDF 405 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l------------~s~s~d~~i~vwd~ 405 (495)
+..+++|+.|++++||++. ....+.++..+. .|...|.+++|+|+|.++ ++|+.|++|++||.
T Consensus 193 ~~~LaSgS~D~TIkIWDl~---TGk~l~tL~g~~--~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLK---TGQLLKKMHIDD--SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp TTEEEEEETTSEEEEEETT---TCCEEEEEECCC-----CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred CceEEEecCCCcEEEEECC---CCcEEEEEcCCC--cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 4668899999999999984 334566665211 134578888999999876 56889999999999
Q ss_pred cccccCCCCcCCCee----ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEE-EEEeecCC
Q 048199 406 ASVVNEPADVHCPVV----EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAW-SVDFSRTE 480 (495)
Q Consensus 406 ~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~~~~~ 480 (495)
.++... .+. ..+|...+.+..++ +.++++|+.||+|+|||+.+++++.++.+|...+. +++|+| |
T Consensus 268 ~tgk~l------~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-D 337 (356)
T 2w18_A 268 KTTLSV------GVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-T 337 (356)
T ss_dssp TTTEEE------EEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-S
T ss_pred CCCEEE------EEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-C
Confidence 887110 011 12444445444554 67899999999999999999999999999987665 589999 9
Q ss_pred CCeEEEeeCCCcEeC
Q 048199 481 PSMLVSGSDDCKVLY 495 (495)
Q Consensus 481 g~~l~s~s~D~~v~l 495 (495)
|.+|+|||.|++|||
T Consensus 338 G~~LaSGS~D~TIkl 352 (356)
T 2w18_A 338 DSHLLAGQKDGNIFV 352 (356)
T ss_dssp SSEEEEECTTSCEEE
T ss_pred CCEEEEEECCCcEEE
Confidence 999999999999986
No 32
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.77 E-value=4.4e-18 Score=162.77 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=119.8
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEccccccCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
..++..+++|+.|++++||++.. .....+..+. +|.+.|++++|+| ++++|++|+.|++|+|||+.++.
T Consensus 18 s~~g~~las~s~D~~v~iw~~~~-~~~~~~~~l~-----gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~--- 88 (297)
T 2pm7_B 18 DYYGKRMATCSSDKTIKIFEVEG-ETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR--- 88 (297)
T ss_dssp CTTSSEEEEEETTSCEEEEEBCS-SCBCCCEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC---
T ss_pred CCCCCEEEEEeCCCEEEEEecCC-CCcEEEEEEc-----cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc---
Confidence 35677889999999999999842 1223344554 8999999999986 48999999999999999998751
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCc--ceeecccccCcEEEEEeecCC---------
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTE--------- 480 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~--------- 480 (495)
.........|...|++++|+|+. +.+|++|+.||+|++||++++. ....+.+|...|++++|+| +
T Consensus 89 --~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~ 165 (297)
T 2pm7_B 89 --WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP-ATIEEDGEHN 165 (297)
T ss_dssp --BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC-CC--------
T ss_pred --eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC-CcccccccCC
Confidence 01122334588899999999973 6799999999999999998763 2466789999999999999 5
Q ss_pred ----CCeEEEeeCCCcEeC
Q 048199 481 ----PSMLVSGSDDCKVLY 495 (495)
Q Consensus 481 ----g~~l~s~s~D~~v~l 495 (495)
+.+|++|+.|++|+|
T Consensus 166 ~~~~~~~l~sgs~D~~v~l 184 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKI 184 (297)
T ss_dssp ----CCEEEEEETTSCEEE
T ss_pred CCCCcceEEEEcCCCcEEE
Confidence 569999999999985
No 33
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.77 E-value=2.8e-19 Score=139.49 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=66.4
Q ss_pred ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
...+.+++.||||+++|+|||+++|||+||+.||.+||....+||.||.++...+|.+|..+.++++.+..
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 93 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMR 93 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999988899999999999999999999999998865
No 34
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.76 E-value=6.9e-18 Score=167.38 Aligned_cols=147 Identities=14% Similarity=0.179 Sum_probs=119.6
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
...+++|+.|+++++|++.. ...+..+......+|...|.++.|++ ++++|++|+.|++|++||++... .
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~------~ 240 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTT---GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS------R 240 (380)
T ss_dssp SSCEEEECTTSCEEEECTTT---CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC------C
T ss_pred CCEEEEECCCCcEEEEEcCC---CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC------c
Confidence 34588999999999999853 23333432222237999999999987 88999999999999999998531 1
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc-------CcEEEEEeecCCCCeEEEeeC
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE-------KRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~-------~~v~~v~~~~~~g~~l~s~s~ 489 (495)
......+|.+.|++++|+|+ +.+|++|+.||+|+|||++++..+..+..+. ..|++++|+| +|.+|++|+.
T Consensus 241 ~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~ 318 (380)
T 3iz6_a 241 AVRTYHGHEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYS 318 (380)
T ss_dssp CCEEECCCSSCCCEEEECTT-SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECT
T ss_pred ceEEECCcCCCeEEEEEecC-CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEEC
Confidence 22334468889999999999 9999999999999999999999888876543 2489999999 9999999999
Q ss_pred CCcEeC
Q 048199 490 DCKVLY 495 (495)
Q Consensus 490 D~~v~l 495 (495)
||.|+|
T Consensus 319 dg~i~v 324 (380)
T 3iz6_a 319 NGDCYV 324 (380)
T ss_dssp TSCEEE
T ss_pred CCCEEE
Confidence 999875
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.75 E-value=5.5e-18 Score=177.20 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=121.4
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..+++++.|+++++|+.. ...+..+. +|...|++++|+|++++|++++.|++|++||....
T Consensus 436 ~d~~~l~~~~~d~~v~~w~~~----~~~~~~~~-----~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~------- 499 (577)
T 2ymu_A 436 PDDQTIASASDDKTVKLWNRN----GQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------- 499 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETT----SCEEEEEE-----CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSC-------
T ss_pred CCCCEEEEEcCCCEEEEEECC----CCEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC-------
Confidence 456678889999999999963 13344444 89999999999999999999999999999996542
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
......+|...|++++|+|+ +.+|++|+.||.|+|||. +++.+..+.+|.+.|++++|+| ||.+|+|+|.|++|++
T Consensus 500 -~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 500 -LLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKL 575 (577)
T ss_dssp -EEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEE
T ss_pred -EEEEEeCCCCCEEEEEEcCC-CCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEE
Confidence 23344578889999999999 899999999999999995 6899999999999999999999 9999999999999985
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.75 E-value=2.4e-17 Score=160.95 Aligned_cols=121 Identities=14% Similarity=0.188 Sum_probs=103.8
Q ss_pred ccCCCcEEEEEE-----cc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC
Q 048199 373 FHSANIVSSIEF-----DR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY 446 (495)
Q Consensus 373 ~~h~~~V~~l~~-----~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~ 446 (495)
.+|.+.|++++| ++ ++.+|+||+.|++|++||+.................+|...|++++|+|+ +.+|++|+.
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~ 96 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSW 96 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-TTEEEEEET
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-CCEEEEEcC
Confidence 389999999999 76 89999999999999999997641110000111233478889999999999 899999999
Q ss_pred CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|++|++||++++..+..+.+|...|++++|+| ++.+|++|+.|++|+|
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~ 144 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKL 144 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEE
Confidence 99999999999999999999999999999999 9999999999999975
No 37
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.75 E-value=6.9e-18 Score=168.48 Aligned_cols=149 Identities=15% Similarity=0.257 Sum_probs=119.5
Q ss_pred cccchhhHHhhhhhhhcccCc-eEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 341 YNAGLADFQSVLTTFTRYSRL-RVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
+.+|+.|+.+.||++....+. ..+. .+.+|.+.|++++|+| ++++|++|+.|++|+|||+..+..........
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~~~~~-----~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 124 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVDKNVP-----LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV 124 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECCTTCC-----CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCS
T ss_pred EEEEcCCCEEEEEECccCCCCCCCCc-----eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCce
Confidence 345777889999998532211 1111 2338999999999999 99999999999999999998861111000122
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec--ccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY--EEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~--~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
....+|...|++++|+|++..+|++|+.||.|+|||+.++..+..+ .+|...|++++|+| ++.+|++++.|+.|+|
T Consensus 125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i 202 (402)
T 2aq5_A 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRV 202 (402)
T ss_dssp EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEE
T ss_pred EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEE
Confidence 3344688999999999994479999999999999999999999999 88999999999999 9999999999999875
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.74 E-value=3.8e-18 Score=172.44 Aligned_cols=143 Identities=13% Similarity=0.139 Sum_probs=114.3
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
...+++|+.|++|+||++.... ...+..+ .+|.+.|++|+|+| ++++|+|||.|++|++||+.+. .
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~-~~~~~~~-----~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-------~ 198 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKD-KPTFIKG-----IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-------I 198 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCS-CCEEECC-----CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-------E
T ss_pred CCEEEEEeCCCEEEEEECCCCC-ceeEEEc-----cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-------c
Confidence 4568899999999999985322 2222222 38999999999998 7889999999999999999875 1
Q ss_pred CCeeec--CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 417 CPVVEM--PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 417 ~~~~~~--~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
...... .+...+.+++|+|+ +.+|++|+.||.|++||++ +..+..+.+|...|++++|+|.+..+|++|+.|++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred eeEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 111111 23345789999999 9999999999999999986 6778899999999999999993445889999999987
Q ss_pred C
Q 048199 495 Y 495 (495)
Q Consensus 495 l 495 (495)
|
T Consensus 277 i 277 (435)
T 4e54_B 277 I 277 (435)
T ss_dssp E
T ss_pred E
Confidence 4
No 39
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.4e-17 Score=162.61 Aligned_cols=141 Identities=14% Similarity=0.112 Sum_probs=114.4
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeecccc-----ccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDI-----FHSANIVSSIEFDR--DDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
+++|+.|+++++|+... ...++.+..+.+ .+|.+.|.+++|+| ++++|++++.|++|++||+.++
T Consensus 88 ~~s~s~D~~i~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~----- 159 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGN---QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD----- 159 (343)
T ss_dssp EEEECSTTEEEEEETTT---EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS-----
T ss_pred eEEecCCCeEEEEEccC---ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC-----
Confidence 78899999999998742 122333333221 15778999999999 9999999999999999999986
Q ss_pred CcCCCeee--cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcce-eeccc-ccCcEEEEEeecCCCCeEEEeeC
Q 048199 414 DVHCPVVE--MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSV-MEYEE-HEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 414 ~~~~~~~~--~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~-~~~~~-h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
..... ..+...+++++|+|+ +.+|++|+.||.|+|||++++..+ ..+.+ |..+|++++|+| ++.+|+++++
T Consensus 160 ---~~~~~~~~~~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~~ 234 (343)
T 3lrv_A 160 ---SQYIVHSAKSDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVECD 234 (343)
T ss_dssp ---CEEEEECCCSSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEES
T ss_pred ---cEEEEEecCCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEeC
Confidence 22222 234557999999999 999999999999999999999888 88888 999999999999 9999999995
Q ss_pred CCcEeC
Q 048199 490 DCKVLY 495 (495)
Q Consensus 490 D~~v~l 495 (495)
| .|+|
T Consensus 235 ~-~v~i 239 (343)
T 3lrv_A 235 Q-TVVC 239 (343)
T ss_dssp S-BEEE
T ss_pred C-eEEE
Confidence 4 8874
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.74 E-value=1.2e-17 Score=166.37 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=120.4
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeec--cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC-
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRH--GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA- 413 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~- 413 (495)
++..+++|+.|+++++|+... ...+..+.. ....+|...|++++|+|++.+|++|+.|++|++||+........
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~---~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSET---GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTT---CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred CCCEEEEEcCCCcEEEEECCC---CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence 456788999999999999843 222333321 11237999999999999999999999999999999986411100
Q ss_pred ----CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecC-----CCCeE
Q 048199 414 ----DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRT-----EPSML 484 (495)
Q Consensus 414 ----~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~-----~g~~l 484 (495)
.........+|...|.+++|+|+ +.+|++|+.||.|++||+.++..+..+.+|...|.+++|++. ++.+|
T Consensus 295 ~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ------CEEEEEECCSSCEEEEEECGG-GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred cCCCCCcceEEEecccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence 01122334578889999999999 899999999999999999999999999999999999998752 57899
Q ss_pred EEeeCCCcEeC
Q 048199 485 VSGSDDCKVLY 495 (495)
Q Consensus 485 ~s~s~D~~v~l 495 (495)
+|||.||+|+|
T Consensus 374 ~sgs~Dg~i~i 384 (393)
T 1erj_A 374 ATGSGDCKARI 384 (393)
T ss_dssp EEEETTSEEEE
T ss_pred EEECCCCcEEE
Confidence 99999999985
No 41
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.74 E-value=4.3e-18 Score=168.10 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=115.7
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
...++..+++|+.|+.+++|++... ....+..+. +|.+.|++++|+|++++|++++.|++|++||+.++.
T Consensus 19 ~s~~g~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~---- 88 (377)
T 3dwl_C 19 FNSQRTEFVTTTATNQVELYEQDGN-GWKHARTFS-----DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG---- 88 (377)
T ss_dssp ECSSSSEEECCCSSSCBCEEEEETT-EEEECCCBC-----CCSSCEEEEEECTTTCCEEEEETTSSEEEC----------
T ss_pred ECCCCCEEEEecCCCEEEEEEccCC-ceEEEEEEe-----cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----
Confidence 3445677889999999999998521 112233333 899999999999999999999999999999999861
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc---ceeeccc-ccCcEEEEEeecCCCCeEEEeeC
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ---SVMEYEE-HEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~---~~~~~~~-h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
..........|...|++++|+|+ +.+|++|+.|+.|++||++++. ....+.+ |...|++++|+| ++.+|++|+.
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~ 166 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCA 166 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEES
T ss_pred ceeeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeC
Confidence 00122334468889999999999 8999999999999999999877 4777887 999999999999 9999999999
Q ss_pred CCcEeC
Q 048199 490 DCKVLY 495 (495)
Q Consensus 490 D~~v~l 495 (495)
|++|++
T Consensus 167 d~~i~i 172 (377)
T 3dwl_C 167 DRKAYV 172 (377)
T ss_dssp SSCEEE
T ss_pred CCEEEE
Confidence 999875
No 42
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.74 E-value=1.6e-17 Score=175.25 Aligned_cols=152 Identities=12% Similarity=0.143 Sum_probs=122.2
Q ss_pred cccccCcccchhhHHhhhhhhhcccCc-e--------------------EE-------------EEeec----cccccCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRL-R--------------------VI-------------AELRH----GDIFHSA 376 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~-~--------------------~~-------------~~~~~----~~~~~h~ 376 (495)
.+++..+++|+.|++++||++...... . .+ +.... ..+.+|.
T Consensus 68 spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~ 147 (611)
T 1nr0_A 68 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 147 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS
T ss_pred CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCC
Confidence 456778899999999999997421110 0 00 00001 1244799
Q ss_pred CcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 377 NIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 377 ~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
..|++++|+|++. .|++|+.|++|++||.... .......+|...|++++|+|+ +.+|++|+.|++|++||+
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-------~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-------KFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-------eEeeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEEC
Confidence 9999999999887 6999999999999998765 222234468889999999999 999999999999999999
Q ss_pred CCCcceeecc-------cccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 456 TTQQSVMEYE-------EHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 456 ~~~~~~~~~~-------~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.++..+..+. +|.+.|++++|+| +|.+|+|++.|++|+|
T Consensus 220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~l 265 (611)
T 1nr0_A 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKI 265 (611)
T ss_dssp TTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred CCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 9999888884 7999999999999 9999999999999985
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.74 E-value=2.6e-17 Score=158.21 Aligned_cols=144 Identities=15% Similarity=0.259 Sum_probs=122.1
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|+.+++|++.. ...+..+. +|...|.++.|+|++++|++|+.|++|++||+.++
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------ 139 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------ 139 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTT---CCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------
T ss_pred cCCCCEEEEECCCCEEEEEECCC---CcEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------
Confidence 34567788999999999999853 34455555 78999999999999999999999999999999886
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
........|...|.+++|+|+ +.+|++|+.||.|++||++++..+..+. .|...+..++|+| ++.+|++++.|+.|
T Consensus 140 -~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i 216 (312)
T 4ery_A 140 -KCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTL 216 (312)
T ss_dssp -CEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEE
T ss_pred -EEEEEecCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeE
Confidence 222233357788999999999 8999999999999999999998887764 4567899999999 99999999999998
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
+|
T Consensus 217 ~i 218 (312)
T 4ery_A 217 KL 218 (312)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.74 E-value=8.2e-19 Score=131.59 Aligned_cols=70 Identities=23% Similarity=0.487 Sum_probs=64.5
Q ss_pred cCCCCccccccccchhhhccccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
..+.+++.||||+++|.+|++++|||+||+.||.+|+.. ...||.||+++...++.+|+.+.++++.+..
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999987 6799999999999999999999999998864
No 45
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.74 E-value=4.7e-18 Score=164.14 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=123.2
Q ss_pred CCCccccccccc---cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCc
Q 048199 325 PHTKQESDKNII---HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRR 399 (495)
Q Consensus 325 ~~~~~~~~~~~~---~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~ 399 (495)
.|...+....+. .+..+++|+.|+++++|++.. .....+..+. +|...|++++|+|+ +.+|++|+.|++
T Consensus 55 gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~~-----~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN-GTWEKSHEHA-----GHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS-SCCCEEEEEC-----CCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC-CcceEEEEcc-----CCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 344444444432 257789999999999999853 2223344444 89999999999997 789999999999
Q ss_pred EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCC----------------CCEEEEecCCCcEEEEeCCCC---cc
Q 048199 400 IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFS----------------KNRIASSDYEGIVTVWDVTTQ---QS 460 (495)
Q Consensus 400 i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~----------------~~~l~sg~~dg~v~iwd~~~~---~~ 460 (495)
|++||+...... ........|...+.+++|+|+. +.+|++|+.|++|++||++.+ ..
T Consensus 129 i~lwd~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 204 (316)
T 3bg1_A 129 ISLLTYTGEGQW----EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204 (316)
T ss_dssp EEEEEECSSSCE----EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE
T ss_pred EEEEecCCCCCc----ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce
Confidence 999999864100 0011223577789999999872 368999999999999999755 46
Q ss_pred eeecccccCcEEEEEeecCCC----CeEEEeeCCCcEeC
Q 048199 461 VMEYEEHEKRAWSVDFSRTEP----SMLVSGSDDCKVLY 495 (495)
Q Consensus 461 ~~~~~~h~~~v~~v~~~~~~g----~~l~s~s~D~~v~l 495 (495)
+..+.+|..+|++++|+| ++ .+|+|||.|++|+|
T Consensus 205 ~~~l~~h~~~V~~v~~sp-~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 205 EQKLEAHSDWVRDVAWAP-SIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp EECCBCCSSCEEEEECCC-CSSCSCCEEEEEETTCEEEE
T ss_pred eeecccCCCceEEEEecC-CCCCCCceEEEEcCCCeEEE
Confidence 788999999999999999 65 78999999999985
No 46
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.74 E-value=8e-18 Score=170.03 Aligned_cols=156 Identities=10% Similarity=0.134 Sum_probs=122.0
Q ss_pred CCCccccccccc--cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 048199 325 PHTKQESDKNII--HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKV 402 (495)
Q Consensus 325 ~~~~~~~~~~~~--~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~v 402 (495)
+|...+....+. ++..+++|+.|+++++|++.. ..+..+.... .+...+.+++|+|++.+|++|+.|++|++
T Consensus 162 gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg~i~~ 235 (435)
T 4e54_B 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG----NILRVFASSD--TINIWFCSLDVSASSRMVVTGDNVGNVIL 235 (435)
T ss_dssp SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS----CEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSSSBEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC----CceeEEeccC--CCCccEEEEEECCCCCEEEEEeCCCcEee
Confidence 344444554443 456789999999999999842 1122222211 34567889999999999999999999999
Q ss_pred EEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceee---cccccCcEEEEEeecC
Q 048199 403 FDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME---YEEHEKRAWSVDFSRT 479 (495)
Q Consensus 403 wd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~---~~~h~~~v~~v~~~~~ 479 (495)
||++.. .......|...|++++|+|++..+|++|+.|++|+|||++++..... ..+|...|++++|+|
T Consensus 236 wd~~~~--------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp- 306 (435)
T 4e54_B 236 LNMDGK--------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP- 306 (435)
T ss_dssp EESSSC--------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-
T ss_pred eccCcc--------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-
Confidence 999764 22233468889999999999667899999999999999998765443 367999999999999
Q ss_pred CCCeEEEeeCCCcEeC
Q 048199 480 EPSMLVSGSDDCKVLY 495 (495)
Q Consensus 480 ~g~~l~s~s~D~~v~l 495 (495)
+|.+|+||+.||.|+|
T Consensus 307 dg~~l~s~~~D~~i~i 322 (435)
T 4e54_B 307 DGARLLTTDQKSEIRV 322 (435)
T ss_dssp TSSEEEEEESSSCEEE
T ss_pred CCCeeEEEcCCCEEEE
Confidence 9999999999999975
No 47
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.73 E-value=5.3e-18 Score=163.76 Aligned_cols=149 Identities=12% Similarity=0.118 Sum_probs=119.4
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEccccccCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
..++..+++|+.|++++||++.. .....+..+. +|.+.|++++|+| ++++|++|+.|++|++||+.++.
T Consensus 22 s~~g~~lasgs~D~~v~lwd~~~-~~~~~~~~l~-----gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~--- 92 (316)
T 3bg1_A 22 DYYGTRLATCSSDRSVKIFDVRN-GGQILIADLR-----GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT--- 92 (316)
T ss_dssp CGGGCEEEEEETTTEEEEEEEET-TEEEEEEEEE-----CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC---
T ss_pred cCCCCEEEEEeCCCeEEEEEecC-CCcEEEEEEc-----CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc---
Confidence 35677899999999999999852 1222345555 8999999999975 48999999999999999998751
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCc---ceeecccccCcEEEEEeecCC--------
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQ---SVMEYEEHEKRAWSVDFSRTE-------- 480 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~~-------- 480 (495)
........+|...|++++|+|+. +.+|++|+.||+|++||++.+. ....+.+|...|.+++|+| +
T Consensus 93 --~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~ 169 (316)
T 3bg1_A 93 --WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLID 169 (316)
T ss_dssp --CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC-----
T ss_pred --ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccc
Confidence 01112234688899999999973 6799999999999999998753 2466788999999999998 5
Q ss_pred ---------CCeEEEeeCCCcEeC
Q 048199 481 ---------PSMLVSGSDDCKVLY 495 (495)
Q Consensus 481 ---------g~~l~s~s~D~~v~l 495 (495)
+.+|++|+.|++|+|
T Consensus 170 ~~~~~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp -CCSCCCCCCCBEECCBTTSBCCE
T ss_pred cccccCccccceEEEecCCCeEEE
Confidence 468999999999875
No 48
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.73 E-value=5.3e-18 Score=169.01 Aligned_cols=149 Identities=14% Similarity=0.102 Sum_probs=116.0
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc--------CCCEEEEEeCCCcEEEEEcccc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR--------DDQLFATAGVSRRIKVFDFASV 408 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p--------~~~~l~s~s~d~~i~vwd~~~~ 408 (495)
....+++|+.|++++||+..... ......+ +.+.||.+.|++++|+| ++++|+|||.|++|+|||+.++
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~-~~~~~~~--~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNET-IITQHVL--GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTE-EEEEEEE--CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred CCCEEEEEeCCCcEEEEECCCCc-cceeeee--cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 34457889999999999974321 1111112 34458999999999998 7899999999999999999876
Q ss_pred ccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceee-------------------------
Q 048199 409 VNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVME------------------------- 463 (495)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~------------------------- 463 (495)
........|...+.+++|+|+++.+|++|+.||+|++||++++.....
T Consensus 177 -------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 177 -------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp -------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred -------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 234455678899999999999557899999999999999987654322
Q ss_pred cccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 464 YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 464 ~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..+|...|.++.|.+.++..|++++.|++|++
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~v 281 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLR 281 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEE
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEE
Confidence 24678889999998449999999999999874
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.73 E-value=9e-18 Score=165.78 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=114.8
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|+++++|++...........+. +|...|++++|+|++++|++++.|++|++||++.+...
T Consensus 64 s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--- 135 (377)
T 3dwl_C 64 APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL-----RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW--- 135 (377)
T ss_dssp CTTTCCEEEEETTSSEEEC------CCCCEEECC-----CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C---
T ss_pred eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec-----ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc---
Confidence 3456778999999999999986432122334443 79999999999999999999999999999999886110
Q ss_pred cCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC------------------CCcceeecccccCcEEEEE
Q 048199 415 VHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT------------------TQQSVMEYEEHEKRAWSVD 475 (495)
Q Consensus 415 ~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~------------------~~~~~~~~~~h~~~v~~v~ 475 (495)
........ |...|++++|+|+ +.+|++|+.||.|++||++ .+.++..+ +|...|++++
T Consensus 136 -~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 136 -WVSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred -eeeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 01222233 8889999999999 8999999999999999985 35567777 8999999999
Q ss_pred eecCCCCeEEEeeCCCcEeC
Q 048199 476 FSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 476 ~~~~~g~~l~s~s~D~~v~l 495 (495)
|+| ++.+|++++.|++|+|
T Consensus 213 ~sp-~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 213 FSP-SGNALAYAGHDSSVTI 231 (377)
T ss_dssp ECT-TSSCEEEEETTTEEC-
T ss_pred ECC-CCCEEEEEeCCCcEEE
Confidence 999 9999999999999975
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.73 E-value=2.5e-17 Score=176.53 Aligned_cols=148 Identities=19% Similarity=0.190 Sum_probs=123.0
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|++++||++.. ...+..+. +|...|.+++|+|++++|++++.|++|++||+......
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~~---~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~--- 507 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLAA---GVSTRRFV-----GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY--- 507 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETTT---TEEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE---
T ss_pred CCCCCEEEEEeCCCcEEEEECCC---CcceeEEe-----CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce---
Confidence 34567788999999999999843 33444554 89999999999999999999999999999998654100
Q ss_pred cCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
.......+|...|.+++|+|+. ...|++|+.||+|+|||++++..+..+.+|.+.|++++|+| ++.+|+||+.||+|
T Consensus 508 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 508 -TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVV 585 (694)
T ss_dssp -EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBC
T ss_pred -eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeE
Confidence 0000112577889999999983 26899999999999999999999999999999999999999 99999999999999
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
+|
T Consensus 586 ~i 587 (694)
T 3dm0_A 586 LL 587 (694)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.72 E-value=4.3e-17 Score=158.05 Aligned_cols=137 Identities=12% Similarity=0.137 Sum_probs=114.2
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPV 419 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 419 (495)
.+++++.|..+++|++.. ...+..+. +|.+.|++++|+|++++|++|+.|++|++||+.+. ..+
T Consensus 187 ~~~s~~~d~~i~i~d~~~---~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--------~~~ 250 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLAN---CKLKTNHI-----GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--------KHL 250 (340)
T ss_dssp EEEEEETTSCEEEEETTT---TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--------EEE
T ss_pred EEEEEcCCCEEEEEECCC---CceeeEec-----CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--------cee
Confidence 356788899999999842 34455554 89999999999999999999999999999999986 455
Q ss_pred eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec---------ccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 420 VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY---------EEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 420 ~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~---------~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
..+.+...+.++.|+|+ +. +++++.|+.|+|||++++..+..+ .+|...|++++|+| +|.+|+||+.|
T Consensus 251 ~~~~~~~~v~~~~~~~~-~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D 327 (340)
T 4aow_A 251 YTLDGGDIINALCFSPN-RY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTD 327 (340)
T ss_dssp EEEECSSCEEEEEECSS-SS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETT
T ss_pred eeecCCceEEeeecCCC-Cc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCC
Confidence 56667788999999998 64 556667999999999987665554 46889999999999 99999999999
Q ss_pred CcEeC
Q 048199 491 CKVLY 495 (495)
Q Consensus 491 ~~v~l 495 (495)
|+|+|
T Consensus 328 g~v~i 332 (340)
T 4aow_A 328 NLVRV 332 (340)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 99985
No 52
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.72 E-value=3.1e-17 Score=158.88 Aligned_cols=151 Identities=18% Similarity=0.229 Sum_probs=120.3
Q ss_pred ccCcccchhhHHhhhhhhhcccC------ceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEccccc
Q 048199 338 REGYNAGLADFQSVLTTFTRYSR------LRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVV 409 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~------~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~ 409 (495)
+..+++|+.|+.+++|++..... ...+..+. +|.+.|.+++|+|+ +.+|++++.|++|++||+.++.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-----DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec-----ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 67789999999999999853211 13344444 78999999999999 9999999999999999997652
Q ss_pred cCCC---------------Cc----------------------------------CC---Cee-ecCCCCCeEEEEEcCC
Q 048199 410 NEPA---------------DV----------------------------------HC---PVV-EMPTRSKLSCLSWNKF 436 (495)
Q Consensus 410 ~~~~---------------~~----------------------------------~~---~~~-~~~~~~~i~~~~~~p~ 436 (495)
.... .. .. .+. ...|...|++++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence 1100 00 00 011 1257788999999999
Q ss_pred CC----CEEEEecCCCcEEEEeCCCC----------------------------------------------cceeeccc
Q 048199 437 SK----NRIASSDYEGIVTVWDVTTQ----------------------------------------------QSVMEYEE 466 (495)
Q Consensus 437 ~~----~~l~sg~~dg~v~iwd~~~~----------------------------------------------~~~~~~~~ 466 (495)
+ .+|++|+.||.|++||++++ ..+..+.+
T Consensus 226 -~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 226 -IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp -SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred -CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence 5 79999999999999999864 56777889
Q ss_pred ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 467 HEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 467 h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|...|++++|+| ++.+|++|+.||.|+|
T Consensus 305 h~~~v~~~~~s~-~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 305 HNGEVWSVSWNL-TGTILSSAGDDGKVRL 332 (351)
T ss_dssp TSSCEEEEEECS-SSCCEEEEETTSCEEE
T ss_pred ccccEEEEEEcC-CCCEEEEecCCCcEEE
Confidence 999999999999 9999999999999985
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.71 E-value=7e-17 Score=166.38 Aligned_cols=148 Identities=12% Similarity=0.120 Sum_probs=107.8
Q ss_pred cCcccchhhHHhhhhhhhcccCceE--EEEeeccccccCCCcEEEEEEccC------CCEEEEEeCCCcEEEEEcccccc
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRV--IAELRHGDIFHSANIVSSIEFDRD------DQLFATAGVSRRIKVFDFASVVN 410 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~--~~~~~~~~~~~h~~~V~~l~~~p~------~~~l~s~s~d~~i~vwd~~~~~~ 410 (495)
..+++|+.|++++||++.. .+... ...+. +|.+.|++++|+|+ +.+|++++.|++|+|||+..+..
T Consensus 174 ~~laS~s~D~tI~iWd~~~-~~~~~~~~~~l~-----~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNT-STLHCVKVQTIV-----HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp --------CEEEEEEEEET-TTCCEEEEEEEE-----ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred hhhccCCCCceEEEEEccC-CCCCceEEEEEE-----ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence 3467888999999999743 22111 12233 67899999999996 57999999999999999987521
Q ss_pred CC---CCcCCCe-eecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeecccccCcEEEE--EeecCCC-C
Q 048199 411 EP---ADVHCPV-VEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEYEEHEKRAWSV--DFSRTEP-S 482 (495)
Q Consensus 411 ~~---~~~~~~~-~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v--~~~~~~g-~ 482 (495)
.. .....+. ...+|...|++++|+++ + .|++|+.||+|++||++++. +...+.+|...|++| +|++ +| .
T Consensus 248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~ 324 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSLADSLITTFDFLSP-T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDT 324 (524)
T ss_dssp SSSEEECCCSCSEEECCTTTCEEEEEESSS-S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCC
T ss_pred ccccceeecCceEEEEcCCCCEEEEEecCC-C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCe
Confidence 10 0011122 23467889999999986 4 89999999999999999764 456789999999999 5677 87 8
Q ss_pred eEEEeeCCCcEeC
Q 048199 483 MLVSGSDDCKVLY 495 (495)
Q Consensus 483 ~l~s~s~D~~v~l 495 (495)
+|+|||.|++|+|
T Consensus 325 ~laS~S~D~tvkl 337 (524)
T 2j04_B 325 VVSTVAVDGYFYI 337 (524)
T ss_dssp EEEEEETTSEEEE
T ss_pred EEEEeccCCeEEE
Confidence 9999999999985
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.71 E-value=2.4e-17 Score=165.10 Aligned_cols=144 Identities=8% Similarity=0.157 Sum_probs=118.3
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|+.+.+|++. .......+. +|.+.|++++|+|++++|++++.|++|++||+.++
T Consensus 106 ~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~------ 171 (420)
T 3vl1_A 106 KLQMRRFILGTTEGDIKVLDSN---FNLQREIDQ-----AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG------ 171 (420)
T ss_dssp CSSSCEEEEEETTSCEEEECTT---SCEEEEETT-----SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------
T ss_pred ecCCCEEEEEECCCCEEEEeCC---Ccceeeecc-----cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC------
Confidence 3456678899999999999974 223333333 89999999999999999999999999999999986
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc---cCcEEE------------------
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH---EKRAWS------------------ 473 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h---~~~v~~------------------ 473 (495)
.......+|...|++++|+|+ +.+|++|+.||+|++||++++..+..+..| ...|.+
T Consensus 172 -~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 172 -SNPRTLIGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp -CCCEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred -cCceEEcCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 233334468899999999999 899999999999999999999988888753 344444
Q ss_pred ---EEeecCCCCeEEEeeCCCcEeC
Q 048199 474 ---VDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 474 ---v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++|+| ++.+|++|+.||.|++
T Consensus 250 v~~~~~s~-~~~~l~~~~~dg~i~i 273 (420)
T 3vl1_A 250 KNNLEFGT-YGKYVIAGHVSGVITV 273 (420)
T ss_dssp CCTTCSSC-TTEEEEEEETTSCEEE
T ss_pred ccceEEcC-CCCEEEEEcCCCeEEE
Confidence 45577 8899999999999875
No 55
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.70 E-value=9.8e-17 Score=167.65 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=121.6
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..+++|+.|+.+++|+.. ...+..+. +|...|++++|+|++++|++++.|++|++||....
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~~----~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------- 458 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNRN----GQLLQTLT-----GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------- 458 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTT----CCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-------
T ss_pred CCCCEEEEEeCCCEEEEEeCC----CCEEEEec-----CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-------
Confidence 456678899999999999863 23344454 89999999999999999999999999999997543
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.......|...|++++|+|+ +.+|++++.|++|+|||. ++..+..+.+|...|++++|+| ++.+|++++.|+.|+|
T Consensus 459 -~~~~~~~~~~~v~~~~~spd-~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~l 534 (577)
T 2ymu_A 459 -LLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKL 534 (577)
T ss_dssp -EEEEEECCSSCEEEEEECTT-SCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEE
T ss_pred -EEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEE
Confidence 23344578889999999999 999999999999999995 6889999999999999999999 9999999999999985
No 56
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.2e-17 Score=179.18 Aligned_cols=157 Identities=11% Similarity=0.091 Sum_probs=118.3
Q ss_pred cccccCcccchhhHHhhhhhhhcccCce--EEEEeecc--ccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccccc
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLR--VIAELRHG--DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN 410 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~--~~~~~~~~--~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~ 410 (495)
..++..+++|+.|++|++|++... ... ....+... ...+|...|++++|+|++++||+|+.|++|+|||+.++..
T Consensus 444 spdg~~laSgs~DgtVrlWd~~~g-~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~ 522 (902)
T 2oaj_A 444 AEYGTAFITGHSNGSVRIYDASHG-DIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQF 522 (902)
T ss_dssp CSEEEEEEEEETTSEEEEEESSCC-TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC
T ss_pred cccCcEEEEecCCCcEEEEECCCc-cccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccc
Confidence 356778999999999999998532 111 11111100 0017899999999999999999999999999999987521
Q ss_pred CC-------CC-------------------------------cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 411 EP-------AD-------------------------------VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 411 ~~-------~~-------------------------------~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.. .. ........+|.+.|++++|+|| | +|++|+.|++|+|
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd-G-~lAsgs~D~tv~l 600 (902)
T 2oaj_A 523 YSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI-G-FVGIAYAAGSLML 600 (902)
T ss_dssp ---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT-S-EEEEEETTSEEEE
T ss_pred cCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC-c-EEEEEeCCCcEEE
Confidence 00 00 0001122358899999999999 8 9999999999999
Q ss_pred EeCCCCcce-----eecc-cccCcEEEEEee-----cCCC---CeEEEeeCCCcEeC
Q 048199 453 WDVTTQQSV-----MEYE-EHEKRAWSVDFS-----RTEP---SMLVSGSDDCKVLY 495 (495)
Q Consensus 453 wd~~~~~~~-----~~~~-~h~~~v~~v~~~-----~~~g---~~l~s~s~D~~v~l 495 (495)
||++++..+ ..+. +|..+|++|+|+ | || .+|++|+.|++|++
T Consensus 601 wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~ 656 (902)
T 2oaj_A 601 IDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVIT 656 (902)
T ss_dssp EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEE
T ss_pred EECCCCeEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEE
Confidence 999876554 3454 899999999999 8 75 79999999999985
No 57
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.70 E-value=5.7e-17 Score=161.79 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=125.9
Q ss_pred CCcccccccc-c-cccCcccchhhHHhhhhhhhcccCc----eEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCCC
Q 048199 326 HTKQESDKNI-I-HREGYNAGLADFQSVLTTFTRYSRL----RVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVSR 398 (495)
Q Consensus 326 ~~~~~~~~~~-~-~~~~~~~g~~d~~~~lw~~~~~~~~----~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~ 398 (495)
|...+....+ . ++..+++|+.|+++++|++...... ..+..+. +|...|.+++|+|++ ++|++++.|+
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-----GHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-----CCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-----CCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 3333344333 3 5677899999999999998542110 2344444 899999999999998 6999999999
Q ss_pred cEEEEEccccccCCCCcCCCeee---cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-ccccCc-EEE
Q 048199 399 RIKVFDFASVVNEPADVHCPVVE---MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-EEHEKR-AWS 473 (495)
Q Consensus 399 ~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-~~h~~~-v~~ 473 (495)
+|++||+.++ ..+.. ..|...|.+++|+|+ +.+|++|+.||.|++||++++..+..+ .+|.+. +.+
T Consensus 155 ~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 225 (402)
T 2aq5_A 155 VILVWDVGTG--------AAVLTLGPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVH 225 (402)
T ss_dssp CEEEEETTTT--------EEEEEECTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCE
T ss_pred EEEEEECCCC--------CccEEEecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceE
Confidence 9999999986 23333 358889999999998 899999999999999999999999998 788776 899
Q ss_pred EEeecCCCCeEEEe---eCCCcEeC
Q 048199 474 VDFSRTEPSMLVSG---SDDCKVLY 495 (495)
Q Consensus 474 v~~~~~~g~~l~s~---s~D~~v~l 495 (495)
++|+| ++.+|++| +.|+.|++
T Consensus 226 ~~~~~-~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 226 AVFVS-EGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp EEECS-TTEEEEEEECTTCCEEEEE
T ss_pred EEEcC-CCcEEEEeccCCCCceEEE
Confidence 99999 99999999 78998874
No 58
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=129.73 Aligned_cols=71 Identities=28% Similarity=0.652 Sum_probs=63.6
Q ss_pred cCCCCccccccccchhhhccccC-CCCccchhhHHhhhcCC--CCCCCCCCcC-ccCCCcchHHHHHHHHHHhHh
Q 048199 47 SELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNK--SDCPCCGHYL-TNNQLYPNFLLDKLLKKTSAR 117 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~-CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~-~~~~l~~n~~l~~~v~~~~~~ 117 (495)
+.+++++.|+||+++|.+|++++ |||+||+.||.+|+... ..||.||.++ ..+++.+|+.+.++++.+...
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNE 82 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHH
Confidence 56788999999999999999999 99999999999999644 5899999997 567899999999999988653
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.69 E-value=2e-16 Score=154.81 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=116.5
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC----CCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD----DQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~----~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
+..+..+..+.+|++........+.... ...|...|++++|+|+ +.+|++|+.|++|++||+.++ .
T Consensus 37 ~~~~~~~~~v~vw~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------~ 106 (366)
T 3k26_A 37 VFATVGSNRVTLYECHSQGEIRLLQSYV---DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-------Q 106 (366)
T ss_dssp EEEEEETTEEEEEEECGGGCEEEEEEEE---CSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-------C
T ss_pred EEEECCCCEEEEEEcCCCcEEEeeeecc---ccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-------e
Confidence 4455555589999986433333333222 1147889999999998 679999999999999999886 2
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec---ccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY---EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
.......|...|.+++|+|+++.+|++|+.||.|++||++++..+..+ .+|...|.+++|+| ++.+|++++.||.|
T Consensus 107 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 185 (366)
T 3k26_A 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSL 185 (366)
T ss_dssp EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCE
Confidence 222333688999999999933999999999999999999999988888 78999999999999 99999999999998
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
++
T Consensus 186 ~i 187 (366)
T 3k26_A 186 KL 187 (366)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 60
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.69 E-value=1e-16 Score=160.99 Aligned_cols=145 Identities=14% Similarity=0.204 Sum_probs=117.1
Q ss_pred ccccCcccchhhHHhhhhhhhcccC-ceEEEEeeccccccCCCcEEEEEEccCC-CEEEE--EeCCCcEEEEEccccccC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSR-LRVIAELRHGDIFHSANIVSSIEFDRDD-QLFAT--AGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s--~s~d~~i~vwd~~~~~~~ 411 (495)
..+..+.++..|+.+++|+...... ...+.... .|.+.|.+++|+|.+ .++++ |+.|++|++||+.++
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-----~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~--- 311 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-----QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--- 311 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-----CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---
T ss_pred CCCCeeeeeeccccceEEeeccccccceeeeeec-----ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---
Confidence 4556678899999999999753221 11222333 789999999999955 46655 457999999999987
Q ss_pred CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEe--cCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASS--DYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg--~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.....+.+...+.++.|+|+ +..++++ +.||.|+|||+.++.++..+.+|.+.|++++|+| +|.+|+|||.
T Consensus 312 -----~~~~~~~~~~~v~~~~~~~~-~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~ 384 (420)
T 4gga_A 312 -----ACLSAVDAHSQVCSILWSPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAA 384 (420)
T ss_dssp -----EEEEEEECSSCEEEEEEETT-TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEET
T ss_pred -----ccceeeccccceeeeeecCC-CCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEec
Confidence 44555566778999999999 6666654 4799999999999999999999999999999999 9999999999
Q ss_pred CCcEeC
Q 048199 490 DCKVLY 495 (495)
Q Consensus 490 D~~v~l 495 (495)
|++|+|
T Consensus 385 D~tvri 390 (420)
T 4gga_A 385 DETLRL 390 (420)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 999985
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.69 E-value=1.7e-16 Score=157.53 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=121.0
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccC---CCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHS---ANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVV 409 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~ 409 (495)
.++ .+++|+.|+.+.+|++.. ...+..+.. ..+| ...|.+++|+|++.+|++++.| +.|++||+.++
T Consensus 196 ~~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~--~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~- 268 (397)
T 1sq9_A 196 ERG-LIATGFNNGTVQISELST---LRPLYNFES--QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG- 268 (397)
T ss_dssp TTS-EEEEECTTSEEEEEETTT---TEEEEEEEC--CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-
T ss_pred CCc-eEEEEeCCCcEEEEECCC---CceeEEEec--cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-
Confidence 345 788899999999999853 345555551 0128 8999999999999999999999 99999999876
Q ss_pred cCCCCcCCCeeec-C-------------CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecc------cc--
Q 048199 410 NEPADVHCPVVEM-P-------------TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYE------EH-- 467 (495)
Q Consensus 410 ~~~~~~~~~~~~~-~-------------~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~------~h-- 467 (495)
..+..+ . |...|.+++|+|+ +.+|++|+.||.|+|||++++..+..+. +|
T Consensus 269 -------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 340 (397)
T 1sq9_A 269 -------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 340 (397)
T ss_dssp -------CEEEEECBC--------CCBSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGG
T ss_pred -------cccceeccCcccccccccccccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchh
Confidence 222222 3 7889999999999 8999999999999999999999999999 88
Q ss_pred -------------cCcEEEEEeecCCC----------CeEEEeeCCCcEeC
Q 048199 468 -------------EKRAWSVDFSRTEP----------SMLVSGSDDCKVLY 495 (495)
Q Consensus 468 -------------~~~v~~v~~~~~~g----------~~l~s~s~D~~v~l 495 (495)
...|++++|+| ++ .+|++|+.||.|+|
T Consensus 341 ~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 341 DILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp GCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred hhhccccccccccCCceeEEEecc-ccccccccccccceEEEecCCCcEEE
Confidence 99999999999 87 79999999999975
No 62
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.69 E-value=2.2e-16 Score=152.78 Aligned_cols=165 Identities=11% Similarity=0.169 Sum_probs=124.0
Q ss_pred CCCcccccccc-ccccCcccchhhHHhhhhhhhcccC-ceEEEEeeccccccCCCcEEEEEEcc--CCCEEEEEeCCCcE
Q 048199 325 PHTKQESDKNI-IHREGYNAGLADFQSVLTTFTRYSR-LRVIAELRHGDIFHSANIVSSIEFDR--DDQLFATAGVSRRI 400 (495)
Q Consensus 325 ~~~~~~~~~~~-~~~~~~~~g~~d~~~~lw~~~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~d~~i 400 (495)
.|...+....+ .++..+++|+.|+.+++|++..... ...+..+. +|...|++++|+| ++++|++++.|++|
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-----AHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-----CCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-----cCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 34433444333 4566789999999999999853222 23444444 7999999999999 69999999999999
Q ss_pred EEEEccccccCCCC--cCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCcc-----------------
Q 048199 401 KVFDFASVVNEPAD--VHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQS----------------- 460 (495)
Q Consensus 401 ~vwd~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~~----------------- 460 (495)
++||+..+...... .........|...|.+++|+|+. +.+|++|+.||.|++||++++..
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999876211100 01122333688899999999974 67899999999999999876542
Q ss_pred -------------------------------------------eeecccccCcEEEEEeecCCC----CeEEEeeCCCcE
Q 048199 461 -------------------------------------------VMEYEEHEKRAWSVDFSRTEP----SMLVSGSDDCKV 493 (495)
Q Consensus 461 -------------------------------------------~~~~~~h~~~v~~v~~~~~~g----~~l~s~s~D~~v 493 (495)
+..+.+|...|++++|+| ++ .+|++|+.||.|
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeE
Confidence 445567899999999999 77 799999999998
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
+|
T Consensus 243 ~i 244 (351)
T 3f3f_A 243 RI 244 (351)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 63
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.9e-16 Score=155.67 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=121.1
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
+..+++|+.|+.+++|++.. .+...+..+. +|...|++++|+|+ +.+|++++.|++|++||+.... .
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~ 137 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEEN-GRWSQIAVHA-----VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-----T 137 (379)
T ss_dssp CSEEEEEETTSCEEEEEEET-TEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS-----C
T ss_pred CCEEEEeccCCEEEEEEcCC-CceeEeeeec-----CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC-----c
Confidence 67788999999999999853 2222444444 78999999999998 9999999999999999998761 1
Q ss_pred CCCeeecCCCCCeEEEEEcCC------------CCCEEEEecCCCcEEEEeCCCCc----ceeecccccCcEEEEEeecC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKF------------SKNRIASSDYEGIVTVWDVTTQQ----SVMEYEEHEKRAWSVDFSRT 479 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~------------~~~~l~sg~~dg~v~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~ 479 (495)
........|...|.+++|+|. ++.+|++|+.||.|++||++++. .+..+.+|...|++++|+|
T Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp- 216 (379)
T 3jrp_A 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP- 216 (379)
T ss_dssp CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-
T ss_pred eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-
Confidence 123344578889999999993 38999999999999999998764 4567888999999999999
Q ss_pred C---CCeEEEeeCCCcEeC
Q 048199 480 E---PSMLVSGSDDCKVLY 495 (495)
Q Consensus 480 ~---g~~l~s~s~D~~v~l 495 (495)
+ +.+|++++.||.|+|
T Consensus 217 ~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 217 TVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp CCSSSEEEEEEETTSCEEE
T ss_pred CCCCCCeEEEEeCCCEEEE
Confidence 7 899999999999875
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.69 E-value=1.5e-16 Score=157.54 Aligned_cols=154 Identities=10% Similarity=0.176 Sum_probs=122.3
Q ss_pred CCCccccccccc-cc-cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEE
Q 048199 325 PHTKQESDKNII-HR-EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIK 401 (495)
Q Consensus 325 ~~~~~~~~~~~~-~~-~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~ 401 (495)
.+...+....+. ++ ..+++|+.|+.++||++... ... ..+. ..+|.+.|.+++|+| ++++|++++.|++|+
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~--~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKT--SFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCE--EEEC---CCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccc--eeee---cCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 344444444433 34 57899999999999998532 222 2222 126999999999999 789999999999999
Q ss_pred EEEccccccCCCCcCCCeeec---CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeec
Q 048199 402 VFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSR 478 (495)
Q Consensus 402 vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 478 (495)
+||+... ...... .+...|.+++|+|+ +.+|++|+.||.|++||+ ++..+..+.+|...|.+++|+|
T Consensus 145 iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 145 LRDFSGS--------VIQVFAKTDSWDYWYCCVDVSVS-RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp EEETTSC--------EEEEEECCCCSSCCEEEEEEETT-TTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred EEECCCC--------ceEEEeccCCCCCCeEEEEECCC-CCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence 9999864 111221 34477999999999 899999999999999999 5888999999999999999999
Q ss_pred CCCC-eEEEeeCCCcEeC
Q 048199 479 TEPS-MLVSGSDDCKVLY 495 (495)
Q Consensus 479 ~~g~-~l~s~s~D~~v~l 495 (495)
++. +|++|+.|+.|+|
T Consensus 215 -~~~~~l~s~~~d~~i~i 231 (383)
T 3ei3_B 215 -RCDWLMATSSVDATVKL 231 (383)
T ss_dssp -SCTTEEEEEETTSEEEE
T ss_pred -CCCCEEEEEeCCCEEEE
Confidence 777 9999999999975
No 65
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.69 E-value=1.8e-16 Score=169.88 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=122.6
Q ss_pred CCCccccccccc-c-ccCcccchhhHHhhhhhhhcccCc--eEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 048199 325 PHTKQESDKNII-H-REGYNAGLADFQSVLTTFTRYSRL--RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRI 400 (495)
Q Consensus 325 ~~~~~~~~~~~~-~-~~~~~~g~~d~~~~lw~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i 400 (495)
.|...+....+. + ...+++|+.|+++++|++...... .....+. +|...|.+++|+|++++|++|+.|++|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-----GHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-----CCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 344444444443 2 346889999999999998543221 2233344 899999999999999999999999999
Q ss_pred EEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee---ecccccCcEEEEEee
Q 048199 401 KVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM---EYEEHEKRAWSVDFS 477 (495)
Q Consensus 401 ~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~---~~~~h~~~v~~v~~~ 477 (495)
+|||+.++ .......+|...|++++|+|+ +.+|+||+.|++|+|||+....... ...+|...|.+++|+
T Consensus 455 ~vwd~~~~-------~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 455 RLWDLAAG-------VSTRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp EEEETTTT-------EEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred EEEECCCC-------cceeEEeCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence 99999886 223344578899999999999 8999999999999999986543222 235799999999999
Q ss_pred cCCC--CeEEEeeCCCcEeC
Q 048199 478 RTEP--SMLVSGSDDCKVLY 495 (495)
Q Consensus 478 ~~~g--~~l~s~s~D~~v~l 495 (495)
| ++ .+|++|+.|++|+|
T Consensus 527 ~-~~~~~~l~s~s~d~~v~v 545 (694)
T 3dm0_A 527 P-NTLQPTIVSASWDKTVKV 545 (694)
T ss_dssp S-CSSSCEEEEEETTSCEEE
T ss_pred C-CCCcceEEEEeCCCeEEE
Confidence 9 65 58999999999985
No 66
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.5e-16 Score=155.38 Aligned_cols=142 Identities=11% Similarity=0.056 Sum_probs=109.8
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
++..+++|+.|+++++|++.. ...+..... .|...|.+++|+|++.+|++|+.|++|++||++++ .
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~~----~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~-------~ 203 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYED---DSQYIVHSA----KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP-------D 203 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSS---SCEEEEECC----CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT-------T
T ss_pred CCCEEEEEeCCCcEEEEECCC---CcEEEEEec----CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-------C
Confidence 566788899999999999853 222333321 45667999999999999999999999999999987 2
Q ss_pred CC-eeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc---ccCcEE--EEEeecCCCCeEEEeeC
Q 048199 417 CP-VVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE---HEKRAW--SVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 417 ~~-~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~---h~~~v~--~v~~~~~~g~~l~s~s~ 489 (495)
.. ..... |.+.|++++|+|+ +.+|++|+ |+.|++||++++..+..+.. |...+. +++|+| +|.+|++++.
T Consensus 204 ~~~~~~~~~h~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~ 280 (343)
T 3lrv_A 204 QASSRFPVDEEAKIKEVKFADN-GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSN 280 (343)
T ss_dssp SCCEECCCCTTSCEEEEEECTT-SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEET
T ss_pred CCccEEeccCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecC
Confidence 22 12233 7899999999999 89999999 55999999999887666554 444454 599999 9999999998
Q ss_pred -CCcEeC
Q 048199 490 -DCKVLY 495 (495)
Q Consensus 490 -D~~v~l 495 (495)
|+.|+|
T Consensus 281 ~d~~i~v 287 (343)
T 3lrv_A 281 ESNSLTI 287 (343)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 888874
No 67
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.69 E-value=1.6e-16 Score=160.26 Aligned_cols=146 Identities=12% Similarity=0.248 Sum_probs=120.4
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
....+++++.|+.+++|++........+..+. .|...|++++|+|++. +|++|+.|++|++||++..
T Consensus 243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~------- 310 (430)
T 2xyi_A 243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL------- 310 (430)
T ss_dssp CTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-----CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-------
T ss_pred CCCEEEEEeCCCeEEEEECCCCCCCcceeEee-----cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-------
Confidence 34567789999999999996433234455554 7889999999999887 7889999999999999975
Q ss_pred CCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC--------------CcceeecccccCcEEEEEeecCC
Q 048199 416 HCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT--------------QQSVMEYEEHEKRAWSVDFSRTE 480 (495)
Q Consensus 416 ~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~~~~~~ 480 (495)
..++.. ..|...|++++|+|++..+|++|+.||.|+|||+.. ...+..+.+|...|++++|+| +
T Consensus 311 ~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~ 389 (430)
T 2xyi_A 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-N 389 (430)
T ss_dssp TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS-S
T ss_pred CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC-C
Confidence 123333 358889999999999557899999999999999986 356778889999999999999 7
Q ss_pred CC-eEEEeeCCCcEeC
Q 048199 481 PS-MLVSGSDDCKVLY 495 (495)
Q Consensus 481 g~-~l~s~s~D~~v~l 495 (495)
+. +|++++.||.|+|
T Consensus 390 ~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 390 EPWIICSVSEDNIMQV 405 (430)
T ss_dssp STTEEEEEETTSEEEE
T ss_pred CCCEEEEEECCCCEEE
Confidence 77 8999999999875
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.8e-16 Score=152.80 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=125.3
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..++.|..|+.+.+|++.. ....+..+. .|...|.+++|+|++.+|++++.|+.|++||+.++
T Consensus 185 ~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~------- 250 (369)
T 3zwl_B 185 TKGKYIIAGHKDGKISKYDVSN--NYEYVDSID-----LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL------- 250 (369)
T ss_dssp GGGCEEEEEETTSEEEEEETTT--TTEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------
T ss_pred CCCCEEEEEcCCCEEEEEECCC--CcEeEEEEe-----cCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-------
Confidence 4556678888999999999852 234555555 78999999999999999999999999999999986
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC--------------cEEEEeCCCCcceeecccccCcEEEEEeecCCC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG--------------IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP 481 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg--------------~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g 481 (495)
.....+.+...+.+++|+|+ +.++++++.++ .|++||..++..+..+.+|...|++++|+| ++
T Consensus 251 -~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~ 327 (369)
T 3zwl_B 251 -QVLKKYETDCPLNTAVITPL-KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP-QG 327 (369)
T ss_dssp -CEEEEEECSSCEEEEEECSS-SSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS
T ss_pred -ceeeeecCCCCceeEEecCC-CceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC-CC
Confidence 44455557888999999999 88999999888 899999999999999999999999999999 99
Q ss_pred CeEEEeeCCCcEeC
Q 048199 482 SMLVSGSDDCKVLY 495 (495)
Q Consensus 482 ~~l~s~s~D~~v~l 495 (495)
.+|++++.||.|+|
T Consensus 328 ~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 328 TSYASGGEDGFIRL 341 (369)
T ss_dssp SEEEEEETTSEEEE
T ss_pred CEEEEEcCCCeEEE
Confidence 99999999999975
No 69
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-18 Score=130.19 Aligned_cols=66 Identities=32% Similarity=0.787 Sum_probs=58.4
Q ss_pred cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcC-------CCCCCCCCCcCccCCCcchHHHHHH
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-------KSDCPCCGHYLTNNQLYPNFLLDKL 110 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-------~~~CP~Cr~~~~~~~l~~n~~l~~~ 110 (495)
..+.+++.+.|+||++.|.+|++++|||+||+.||.+|+.. ...||.||.++..+++.+|+.+.++
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 44677889999999999999999999999999999999987 4689999999998888888766443
No 70
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.68 E-value=9.8e-18 Score=131.86 Aligned_cols=74 Identities=30% Similarity=0.651 Sum_probs=66.7
Q ss_pred cccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ 118 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~ 118 (495)
.++.+++.+.|+||++.|.+|+.+ +|||+||+.||.+|+.....||.||.++...++.+|+.+.++++.+....
T Consensus 15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 345567789999999999999987 89999999999999998899999999999899999999999999887643
No 71
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.68 E-value=3.7e-16 Score=151.39 Aligned_cols=167 Identities=17% Similarity=0.202 Sum_probs=129.9
Q ss_pred cCCCCcccccccccc--ccCcccchhhHHhhhhhhhcccC--ceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC
Q 048199 323 NQPHTKQESDKNIIH--REGYNAGLADFQSVLTTFTRYSR--LRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR 398 (495)
Q Consensus 323 ~~~~~~~~~~~~~~~--~~~~~~g~~d~~~~lw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~ 398 (495)
+.+|...+....+.+ +..+++|+.|++++||++..... ..+...+. +|...|.++.|+|++++|++++.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-----~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-----GHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-----CCCCCEEEEEECCCCCEEEEEcccc
Confidence 456777777666543 35688999999999999864322 12344444 8999999999999999999999999
Q ss_pred cEEEEEccccccCCC---------------CcC--------C-------------CeeecCCCCCeEEEEEcCCC-CCEE
Q 048199 399 RIKVFDFASVVNEPA---------------DVH--------C-------------PVVEMPTRSKLSCLSWNKFS-KNRI 441 (495)
Q Consensus 399 ~i~vwd~~~~~~~~~---------------~~~--------~-------------~~~~~~~~~~i~~~~~~p~~-~~~l 441 (495)
.|++|+......... ... . ......|...+..++|+++. ..++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 999999876411000 000 0 01112456778999998873 3578
Q ss_pred EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 442 ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 442 ~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++++.|+.|++||++++..+..+.+|.+.|++++|+| ++.+|++|+.|+.|+|
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAML 241 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEE
T ss_pred EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 9999999999999999999999999999999999999 9999999999999975
No 72
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.68 E-value=4.1e-16 Score=150.69 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=121.6
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..+++|+ |+.+++|++........+..+. ..+|...|.+++|+|++++|++++.|+.|++||+..+..
T Consensus 61 ~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----- 131 (337)
T 1gxr_A 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD---CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP----- 131 (337)
T ss_dssp SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE---CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------
T ss_pred cCCcEEEEcC-CCeEEEEECCCCCceeeeeccc---ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-----
Confidence 4455566776 8999999986433222233332 126889999999999999999999999999999988610
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
........|...+.+++|+|+ +.+|++|+.||.|++||++++..+..+.+|...|.+++|+| ++.+|++++.|+.|++
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 132 RIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRS 209 (337)
T ss_dssp EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred ceeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEE
Confidence 112233457788999999999 89999999999999999999999999999999999999999 9999999999999874
No 73
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=153.07 Aligned_cols=122 Identities=10% Similarity=0.107 Sum_probs=96.1
Q ss_pred CCCCcccccccccc----ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc
Q 048199 324 QPHTKQESDKNIIH----REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR 399 (495)
Q Consensus 324 ~~~~~~~~~~~~~~----~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~ 399 (495)
..+...+....+.. +..+++|+.|+.+++|++... .......+. +|.+.|++++|+|++++|++++.|++
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-GQTIPKAQQ-----MHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT-SCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-CceeEEEec-----cccCCEEEEEECcCCCEEEEEcCCCc
Confidence 34444444444443 367899999999999998531 222224444 79999999999999999999999999
Q ss_pred EEEEEccccccCCCCcCCCeeecCCCCCeEEEEE--cCCCCCEEEEecCCCcEEEEeCCCCcc
Q 048199 400 IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSW--NKFSKNRIASSDYEGIVTVWDVTTQQS 460 (495)
Q Consensus 400 i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~l~sg~~dg~v~iwd~~~~~~ 460 (495)
|++||+.++ .......|...|++++| +|+ +.+|++|+.||.|++||++++..
T Consensus 110 v~iwd~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 110 AKMWDLSSN--------QAIQIAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEEEETTTT--------EEEEEEECSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSC
T ss_pred EEEEEcCCC--------CceeeccccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcE
Confidence 999999986 34455678899999999 888 88999999999999999887653
No 74
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=159.33 Aligned_cols=153 Identities=16% Similarity=0.243 Sum_probs=117.7
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
..++..+++| .|+.+++|++........+..++...+.+|...|++++|+|++ ++|++|+.|++|++||++++...
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-- 262 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC-- 262 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS--
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc--
Confidence 3456677788 7999999998632222222233333455899999999999998 99999999999999999986210
Q ss_pred CcCCCeeec-CCCC------------CeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCc---------
Q 048199 414 DVHCPVVEM-PTRS------------KLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKR--------- 470 (495)
Q Consensus 414 ~~~~~~~~~-~~~~------------~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~--------- 470 (495)
......+ .|.. .|.+++|+|+ +.+|++|+. |.|+|||+++ +.++..+.+|...
T Consensus 263 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 263 --DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp --CTTCEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred --cceeeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 0012222 3333 8999999999 999999998 9999999997 8899999988642
Q ss_pred ------EEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 471 ------AWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 471 ------v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+..++|+| ++.+|++|+.||.|+|
T Consensus 339 ~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~i 368 (447)
T 3dw8_B 339 NDCIFDKFECCWNG-SDSVVMTGSYNNFFRM 368 (447)
T ss_dssp TSGGGCCCCEEECT-TSSEEEEECSTTEEEE
T ss_pred ccccccceEEEECC-CCCEEEEeccCCEEEE
Confidence 23499999 9999999999999975
No 75
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.67 E-value=2.7e-16 Score=158.49 Aligned_cols=152 Identities=12% Similarity=0.182 Sum_probs=121.6
Q ss_pred ccCcccchhhHHhhhhhhhcc-------cCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccc
Q 048199 338 REGYNAGLADFQSVLTTFTRY-------SRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVV 409 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~-------~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~ 409 (495)
+..+++|+.|+.|.+|++... .....+..+. +|...|++++|+|++. +|++|+.|++|++||+..+.
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 215 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-----GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP 215 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-----CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCC
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-----CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCC
Confidence 456888899999999998642 1234445555 8999999999999988 99999999999999998741
Q ss_pred cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC---cceeecccccCcEEEEEeecCCCC-eEE
Q 048199 410 NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ---QSVMEYEEHEKRAWSVDFSRTEPS-MLV 485 (495)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~g~-~l~ 485 (495)
..............|...|.+++|+|+++.+|++++.||.|++||++++ ..+..+.+|...|++++|+| ++. +|+
T Consensus 216 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~ 294 (430)
T 2xyi_A 216 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-YSEFILA 294 (430)
T ss_dssp BGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS-SCTTEEE
T ss_pred CCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC-CCCCEEE
Confidence 1100001122334688899999999965899999999999999999987 57788889999999999999 665 799
Q ss_pred EeeCCCcEeC
Q 048199 486 SGSDDCKVLY 495 (495)
Q Consensus 486 s~s~D~~v~l 495 (495)
+|+.||.|+|
T Consensus 295 tg~~dg~v~v 304 (430)
T 2xyi_A 295 TGSADKTVAL 304 (430)
T ss_dssp EEETTSEEEE
T ss_pred EEeCCCeEEE
Confidence 9999999975
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.67 E-value=3.8e-16 Score=153.38 Aligned_cols=148 Identities=14% Similarity=0.210 Sum_probs=120.7
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|+.+.+|++.. .+...+..+. +|...|.+++|+|++++|++++.|++|++||+.++.
T Consensus 17 s~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----- 85 (372)
T 1k8k_C 17 NKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELK-----EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT----- 85 (372)
T ss_dssp CTTSSEEEEECSSSEEEEEEEET-TEEEEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----
T ss_pred CCCCCEEEEEeCCCEEEEEeCCC-CcEEeeeeec-----CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-----
Confidence 34566778888899999999842 2222555555 799999999999999999999999999999998751
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
.........|...|.+++|+|+ +.+|++|+.||.|++||+..+.. .....+|...|.+++|+| ++.+|++|+.|
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 163 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCD 163 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETT
T ss_pred eeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCC
Confidence 0112223467888999999999 89999999999999999988763 333467899999999999 99999999999
Q ss_pred CcEeC
Q 048199 491 CKVLY 495 (495)
Q Consensus 491 ~~v~l 495 (495)
+.|++
T Consensus 164 g~i~~ 168 (372)
T 1k8k_C 164 FKCRI 168 (372)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 99874
No 77
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.67 E-value=1.3e-16 Score=159.67 Aligned_cols=143 Identities=12% Similarity=0.004 Sum_probs=118.7
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
...++..+++|+.|+.+++|++..... .. .+..| ..+....|+|++++|++++.|+.|++||+.++
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~---~~-----~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----- 129 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDG---SK-----MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----- 129 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEET---TT-----TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC-----
T ss_pred eeecCCeEEEEEcCCcEEEEEecccce---ee-----EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc-----
Confidence 345677788999999999999743211 10 11133 45556678999999999999999999999876
Q ss_pred CcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 414 DVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 414 ~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
..... ..|...|++++|+|+ +.+|++|+.||.|++||+.++..+..+.+|...|++++|+| ++.+|++++.|++
T Consensus 130 ---~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~ 204 (420)
T 3vl1_A 130 ---LQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGT 204 (420)
T ss_dssp ---EEEEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred ---ceeeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCc
Confidence 33333 378899999999999 88999999999999999999999999999999999999999 9999999999999
Q ss_pred EeC
Q 048199 493 VLY 495 (495)
Q Consensus 493 v~l 495 (495)
|++
T Consensus 205 v~i 207 (420)
T 3vl1_A 205 IRL 207 (420)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 78
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.67 E-value=1.3e-17 Score=135.38 Aligned_cols=71 Identities=27% Similarity=0.544 Sum_probs=64.3
Q ss_pred ccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199 46 VSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ 118 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~ 118 (495)
++.+.+.+.|+||++.|.+|+++ +|||+||+.||.+|+. ..||.||.++...++.+|+.+.++++.+....
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 45667889999999999999999 9999999999999987 78999999998899999999999999876543
No 79
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=150.26 Aligned_cols=146 Identities=13% Similarity=0.169 Sum_probs=116.4
Q ss_pred cccccCcccchhhHHhhhhhhhcccCc-eEEEEeeccccccCCCcEEEEEEccCCC-E--EEEEeCCCcEEEEEcccccc
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRL-RVIAELRHGDIFHSANIVSSIEFDRDDQ-L--FATAGVSRRIKVFDFASVVN 410 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~--l~s~s~d~~i~vwd~~~~~~ 410 (495)
...+..+.+|+.|+++++|++...... ....... .|.+.|.++.++|++. + +++++.+++|++||....
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-- 231 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-----QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-- 231 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC-----CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC--
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeec-----ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc--
Confidence 345566788999999999998532211 1122222 6788999999999655 3 346778999999999886
Q ss_pred CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEE--ecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIAS--SDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~s--g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
.......+...+..+.|+|+ +..+++ |+.|+.|+|||+++++++..+.+|.+.|++++|+| +|.+|+|||
T Consensus 232 ------~~~~~~~~~~~v~~~~~~~~-~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s 303 (318)
T 4ggc_A 232 ------ACLSAVDAHSQVCSILWSPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAA 303 (318)
T ss_dssp ------CEEEEEECSSCEEEEEEETT-TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEE
T ss_pred ------cccccccceeeeeeeeeccc-ccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEe
Confidence 44455567788999999999 666554 45899999999999999999999999999999999 999999999
Q ss_pred CCCcEeC
Q 048199 489 DDCKVLY 495 (495)
Q Consensus 489 ~D~~v~l 495 (495)
.||+|+|
T Consensus 304 ~D~~v~i 310 (318)
T 4ggc_A 304 ADETLRL 310 (318)
T ss_dssp TTTEEEE
T ss_pred cCCeEEE
Confidence 9999985
No 80
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.2e-16 Score=152.53 Aligned_cols=150 Identities=12% Similarity=0.143 Sum_probs=121.5
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEccccccCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
..++..+++|+.|+.++||++.. .....+..+. +|.+.|++++|+|+ +++|++++.|++|++||+.++.
T Consensus 20 s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--- 90 (379)
T 3jrp_A 20 DYYGKRLATCSSDKTIKIFEVEG-ETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--- 90 (379)
T ss_dssp CSSSSEEEEEETTSCEEEEEEET-TEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE---
T ss_pred cCCCCEEEEEECCCcEEEEecCC-CcceeeeEec-----CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc---
Confidence 34567788999999999999842 2233444554 89999999999976 9999999999999999998861
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCCc--ceeecccccCcEEEEEeecC----------
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRT---------- 479 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~---------- 479 (495)
.........|...|++++|+|+. +.+|++|+.||.|++||++++. ....+.+|...|++++|+|.
T Consensus 91 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (379)
T 3jrp_A 91 --WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 168 (379)
T ss_dssp --EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred --eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence 01222334578899999999984 6799999999999999998873 44567789999999999994
Q ss_pred --CCCeEEEeeCCCcEeC
Q 048199 480 --EPSMLVSGSDDCKVLY 495 (495)
Q Consensus 480 --~g~~l~s~s~D~~v~l 495 (495)
++.+|++|+.|+.|++
T Consensus 169 ~~~~~~l~~~~~dg~i~i 186 (379)
T 3jrp_A 169 TKESRKFVTGGADNLVKI 186 (379)
T ss_dssp -CTTCEEEEEETTSCEEE
T ss_pred CCCCCEEEEEeCCCeEEE
Confidence 4899999999999875
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.66 E-value=5.9e-16 Score=151.96 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=120.3
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..+++|+.|+.+++|++.. .+......+ .+|...|.+++|+|++++|++++.|+.|++||+.......
T Consensus 62 ~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~--- 132 (372)
T 1k8k_C 62 PDSNRIVTCGTDRNAYVWTLKG-RTWKPTLVI-----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW--- 132 (372)
T ss_dssp TTTTEEEEEETTSCEEEEEEET-TEEEEEEEC-----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE---
T ss_pred CCCCEEEEEcCCCeEEEEECCC-CeeeeeEEe-----ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce---
Confidence 4566788899999999999842 211222222 2788999999999999999999999999999998861000
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC------------------CCcceeecccccCcEEEEEee
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT------------------TQQSVMEYEEHEKRAWSVDFS 477 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~------------------~~~~~~~~~~h~~~v~~v~~~ 477 (495)
........|...|.+++|+|+ +.+|++|+.||.|++||++ ++..+..+.+|...|.+++|+
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred eeeeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence 011222457889999999999 8999999999999999953 678888999999999999999
Q ss_pred cCCCCeEEEeeCCCcEeC
Q 048199 478 RTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 478 ~~~g~~l~s~s~D~~v~l 495 (495)
| ++.+|++++.|+.|++
T Consensus 212 ~-~~~~l~~~~~d~~i~i 228 (372)
T 1k8k_C 212 A-NGSRVAWVSHDSTVCL 228 (372)
T ss_dssp S-SSSEEEEEETTTEEEE
T ss_pred C-CCCEEEEEeCCCEEEE
Confidence 9 9999999999999875
No 82
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.66 E-value=6.3e-16 Score=162.46 Aligned_cols=113 Identities=16% Similarity=0.230 Sum_probs=102.0
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-C-CCCCeEEEEEcC----------CCCC
Q 048199 372 IFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-P-TRSKLSCLSWNK----------FSKN 439 (495)
Q Consensus 372 ~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~p----------~~~~ 439 (495)
+.+|...|++++|+|++++|++++.|+.|++||+.++ ..+..+ . |...|++++|+| + +.
T Consensus 484 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~-~~ 554 (615)
T 1pgu_A 484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR--------EVKTSRWAFRTSKINAISWKPAEKGANEEEIE-ED 554 (615)
T ss_dssp SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------EEEECCSCCCSSCEEEEEECCCC------CCS-CC
T ss_pred cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC--------cceeEeecCCCCceeEEEEcCccccccccccC-CC
Confidence 3468999999999999999999999999999999886 222333 3 888999999999 8 89
Q ss_pred EEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 440 RIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 440 ~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+|++|+.||.|++||+.++ ..+..+.+|...|++++|+| ++. |++++.||+|+|
T Consensus 555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~i 609 (615)
T 1pgu_A 555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKR 609 (615)
T ss_dssp EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcC-CCC-eEEecCCceEEE
Confidence 9999999999999999987 78999999999999999999 988 999999999975
No 83
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.66 E-value=3.9e-16 Score=154.46 Aligned_cols=143 Identities=16% Similarity=0.214 Sum_probs=117.4
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
++..+++|+.|+.+++|++.. ..+..+... .+|...|.+++|+|++.+|++++.|++|++||+...
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------- 195 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSG----SVIQVFAKT--DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-------- 195 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTS----CEEEEEECC--CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC--------
T ss_pred CCCEEEEEeCCCEEEEEECCC----CceEEEecc--CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC--------
Confidence 456788999999999999862 223333321 146689999999999999999999999999999532
Q ss_pred CCeeecCCCCCeEEEEEcCCCCC-EEEEecCCCcEEEEeCCC----CcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKN-RIASSDYEGIVTVWDVTT----QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~~----~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
.......|...|.+++|+|+ +. +|++|+.|+.|++||+++ +..+..+ +|...|++++|+|.++.+|++++.|+
T Consensus 196 ~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~ 273 (383)
T 3ei3_B 196 EIFKEKLHKAKVTHAEFNPR-CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRN 273 (383)
T ss_dssp EEEEEECSSSCEEEEEECSS-CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSS
T ss_pred EEEEeccCCCcEEEEEECCC-CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCC
Confidence 22333468889999999999 66 999999999999999987 5566666 79999999999987789999999999
Q ss_pred cEeC
Q 048199 492 KVLY 495 (495)
Q Consensus 492 ~v~l 495 (495)
.|+|
T Consensus 274 ~i~i 277 (383)
T 3ei3_B 274 EIRV 277 (383)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 9875
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=158.47 Aligned_cols=153 Identities=12% Similarity=0.158 Sum_probs=117.9
Q ss_pred cccccCcccchhhHHhhhhhhhccc--------CceEEEEeeccccccCC------------CcEEEEEEccCC--CEEE
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYS--------RLRVIAELRHGDIFHSA------------NIVSSIEFDRDD--QLFA 392 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~--------~~~~~~~~~~~~~~~h~------------~~V~~l~~~p~~--~~l~ 392 (495)
..++..+++|+.|+.++||++.... .+..+..+. +|. +.|.+++|+|++ .+|+
T Consensus 37 s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 37 NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-----SHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-----CCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-----cccccccccccccccCceEEEEEcCCCCcceEE
Confidence 3456778999999999999985322 122344444 787 889999999998 7999
Q ss_pred EEeCCCcEEEEEccccccC------------------CCCcCCC---------------eeecCCCCCeEEEEEcCCCCC
Q 048199 393 TAGVSRRIKVFDFASVVNE------------------PADVHCP---------------VVEMPTRSKLSCLSWNKFSKN 439 (495)
Q Consensus 393 s~s~d~~i~vwd~~~~~~~------------------~~~~~~~---------------~~~~~~~~~i~~~~~~p~~~~ 439 (495)
+++.|++|++||+...... ......+ ....+|...|++++|+|+ +.
T Consensus 112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~ 190 (447)
T 3dw8_B 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD-YE 190 (447)
T ss_dssp EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT-SS
T ss_pred EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC-CC
Confidence 9999999999999874110 0000000 112468889999999999 89
Q ss_pred EEEEecCCCcEEEEeCCC-Cccee-------ecccccCcEEEEEeecCCC-CeEEEeeCCCcEeC
Q 048199 440 RIASSDYEGIVTVWDVTT-QQSVM-------EYEEHEKRAWSVDFSRTEP-SMLVSGSDDCKVLY 495 (495)
Q Consensus 440 ~l~sg~~dg~v~iwd~~~-~~~~~-------~~~~h~~~v~~v~~~~~~g-~~l~s~s~D~~v~l 495 (495)
+|++| .||.|++||+++ +..+. .+.+|...|++++|+| ++ .+|++|+.||.|+|
T Consensus 191 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 191 TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEE
T ss_pred EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEE
Confidence 99999 799999999984 44444 4778999999999999 87 99999999999975
No 85
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-17 Score=127.60 Aligned_cols=68 Identities=21% Similarity=0.509 Sum_probs=61.3
Q ss_pred CCCccccccccchhhhccccC-CCCccchhhHHhhhcCC------CCCCC--CCCc-CccCCCcchHHHHHHHHHHhH
Q 048199 49 LDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNK------SDCPC--CGHY-LTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~Pv~l~-CGH~FC~~Ci~~~~~~~------~~CP~--Cr~~-~~~~~l~~n~~l~~~v~~~~~ 116 (495)
..+++.||||+++|+|||+++ |||+||+.||.+||... ..||+ |++. +...+|.+|..+.++|+.+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 467899999999999999996 99999999999999753 48999 8877 888999999999999998865
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.66 E-value=3.8e-16 Score=152.78 Aligned_cols=137 Identities=11% Similarity=0.202 Sum_probs=116.9
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
..+++|+.|+.+++|++.. ...+..+. +|...|.+++|+| ++.+|++++.|++|++||+.++ .
T Consensus 86 ~~l~~~~~dg~i~v~d~~~---~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------~ 149 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPIT---MQCIKHYV-----GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD--------T 149 (366)
T ss_dssp EEEEEEETTCEEEEECTTT---CCEEEEEE-----SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT--------E
T ss_pred CEEEEecCCCEEEEEEchh---ceEeeeec-----CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC--------e
Confidence 4688999999999999853 34455555 7999999999999 8999999999999999999886 2
Q ss_pred Ceee----cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc---------------------------
Q 048199 418 PVVE----MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--------------------------- 466 (495)
Q Consensus 418 ~~~~----~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--------------------------- 466 (495)
.... ..|...|.+++|+|+ +.+|++|+.||.|++||++++..+..+..
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred EEEEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 3333 368889999999999 89999999999999999998876665554
Q ss_pred -ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 467 -HEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 467 -h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|...|.+++|+ +.+|++++.|+.|++
T Consensus 229 ~~~~~v~~~~~~---~~~l~~~~~d~~i~~ 255 (366)
T 3k26_A 229 IHRNYVDCVRWL---GDLILSKSCENAIVC 255 (366)
T ss_dssp SCSSCCCEEEEE---TTEEEEECSSSEEEE
T ss_pred CCcceEEEEEEc---CCEEEEEecCCEEEE
Confidence 99999999998 469999999999874
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=151.98 Aligned_cols=146 Identities=15% Similarity=0.204 Sum_probs=115.3
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCc---
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADV--- 415 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~--- 415 (495)
.++.|..|+.+.+|++.. ...+..+. +|.+.|.+++|+|++. +|++++.|+.|++||++.........
T Consensus 158 ~~~~~~~~~~v~~~d~~~---~~~~~~~~-----~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKS---GSCSHILQ-----GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp EEEEEESSSSEEEEESSS---SCCCEEEC-----CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred EEEEEcCCCeEEEEeCCC---cceeeeec-----CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 577888889999999843 23344444 7899999999999988 58999999999999998762111100
Q ss_pred ------CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc------------------------------
Q 048199 416 ------HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ------------------------------ 459 (495)
Q Consensus 416 ------~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~------------------------------ 459 (495)
........|...|.+++|+|+ +.+|++|+.||.|++||+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T 4a11_B 230 NGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV 308 (408)
T ss_dssp TTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEE
T ss_pred ccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEE
Confidence 001111357788999999999 9999999999999999987643
Q ss_pred -----------------ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 460 -----------------SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 460 -----------------~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.+..+.+|...|++++|+| ++.+|++|+.||.|+|
T Consensus 309 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~i 360 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILA 360 (408)
T ss_dssp EEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred EEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEE
Confidence 3555678999999999999 9999999999999975
No 88
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.65 E-value=1.1e-15 Score=147.52 Aligned_cols=141 Identities=14% Similarity=0.131 Sum_probs=121.2
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..+.+|+.|+.+.+|++.. ...+..+. +|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 151 ~~~~~l~~~~~dg~v~~~d~~~---~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------- 215 (337)
T 1gxr_A 151 PDSKVCFSCCSDGNIAVWDLHN---QTLVRQFQ-----GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG------- 215 (337)
T ss_dssp TTSSEEEEEETTSCEEEEETTT---TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-------
T ss_pred CCCCEEEEEeCCCcEEEEeCCC---Cceeeeee-----cccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-------
Confidence 3556678888999999999842 34455554 78999999999999999999999999999999986
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.....+.+...+.+++|+|+ +.+|++|+.||.|++||++++.. ..+.+|...|.+++|+| ++.+|++++.||.|++
T Consensus 216 -~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 216 -RQLQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNA 291 (337)
T ss_dssp -EEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred -ceEeeecCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEE
Confidence 34455567788999999999 89999999999999999997765 46778999999999999 9999999999999874
No 89
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.65 E-value=7.2e-16 Score=175.84 Aligned_cols=145 Identities=15% Similarity=0.196 Sum_probs=126.0
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
..++..+++|+.|+++++|++.. ...+..+. +|.+.|.+++|+|++++|++++.|++|+|||+.++
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~~---~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~------ 689 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAET---GEKLLDIK-----AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG------ 689 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT---CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------
T ss_pred CCCCCEEEEEeCCCeEEEEECCC---CCEEEEec-----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC------
Confidence 34567788999999999999843 34455555 89999999999999999999999999999999987
Q ss_pred cCCCeeecCCCCCeEEEEEcCC-CCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKF-SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~-~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
........|...|++++|+|+ ++.++++|+.||.|++||+.++.++..+.+|.+.|++++|+| ++.+|++++.||+|
T Consensus 690 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 690 -KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTL 767 (1249)
T ss_dssp -CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS-STTEEEEEESSSEE
T ss_pred -ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec-CCCEEEEEECCCeE
Confidence 222233468889999999995 266899999999999999999999999999999999999999 99999999999998
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
++
T Consensus 768 ~v 769 (1249)
T 3sfz_A 768 RL 769 (1249)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 90
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.9e-16 Score=155.12 Aligned_cols=147 Identities=14% Similarity=0.243 Sum_probs=121.0
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeec-cccccCCCcEEEEEEccCC-CEEEEEeCCC---cEEEEEccccccCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRH-GDIFHSANIVSSIEFDRDD-QLFATAGVSR---RIKVFDFASVVNEP 412 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~---~i~vwd~~~~~~~~ 412 (495)
...+++|+.|+.+++|++.. ...+..+.. +...+|...|.+++|+|++ .+|++++.|+ .|++||++.+
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~---- 250 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA---- 250 (416)
T ss_dssp TTEEEEESSSSCEEEEETTT---TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST----
T ss_pred CcEEEEEcCCCCEEEEECCC---CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC----
Confidence 45678889999999999853 344444442 1122348899999999987 6899999999 9999999985
Q ss_pred CCcCCCeeec--CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCC-CeEEEeeC
Q 048199 413 ADVHCPVVEM--PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP-SMLVSGSD 489 (495)
Q Consensus 413 ~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g-~~l~s~s~ 489 (495)
..+...+ .|...|++++|+|+++.+|++|+.||.|++||+++++.+..+.+|...|++++|+| ++ .+|++++.
T Consensus 251 ---~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~ 326 (416)
T 2pm9_A 251 ---NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASF 326 (416)
T ss_dssp ---TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCS
T ss_pred ---CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEec
Confidence 1222223 57889999999993389999999999999999999999999999999999999999 77 89999999
Q ss_pred CCcEeC
Q 048199 490 DCKVLY 495 (495)
Q Consensus 490 D~~v~l 495 (495)
|+.|+|
T Consensus 327 d~~i~i 332 (416)
T 2pm9_A 327 DNKIEV 332 (416)
T ss_dssp SSEEEE
T ss_pred CCcEEE
Confidence 999875
No 91
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.65 E-value=1e-15 Score=150.26 Aligned_cols=143 Identities=12% Similarity=0.097 Sum_probs=104.2
Q ss_pred ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC---------------------------------
Q 048199 342 NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD--------------------------------- 388 (495)
Q Consensus 342 ~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~--------------------------------- 388 (495)
..|+.|.++++|+... ...+..+. |...|.++.|+++.
T Consensus 75 ~~~~~d~~v~iWd~~~---~~~~~~~~------~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 145 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVK---KQDVSRIK------VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEF 145 (355)
T ss_dssp EECSSTTEEEEEETTT---TEEEEEEE------CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEE
T ss_pred EEECCccEEEEEECCC---CcEEEEEE------CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEE
Confidence 5677778999999742 23333332 34466777666542
Q ss_pred --CEEEE--EeCCCcEEEEEccccccCCCCcC-------C--CeeecCCCCCeEEEEEcCCCCCEEEEecCCCc-EEEEe
Q 048199 389 --QLFAT--AGVSRRIKVFDFASVVNEPADVH-------C--PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI-VTVWD 454 (495)
Q Consensus 389 --~~l~s--~s~d~~i~vwd~~~~~~~~~~~~-------~--~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~-v~iwd 454 (495)
.+++. |+.|++|++||+.++........ . .....+|.+.|++++|+|+ +.+|++|+.||+ |+|||
T Consensus 146 s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 146 SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-SDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp ETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-SSEEEEEETTCSEEEEEE
T ss_pred EccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-CCEEEEEeCCCCEEEEEE
Confidence 23333 46677777777765410000000 0 2334578899999999999 999999999998 99999
Q ss_pred CCCCcceeecc-c-ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 455 VTTQQSVMEYE-E-HEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 455 ~~~~~~~~~~~-~-h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++++.++..+. + |...|++++|+| ++.+|++++.|++|+|
T Consensus 225 ~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~i 266 (355)
T 3vu4_A 225 TEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHV 266 (355)
T ss_dssp TTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEE
T ss_pred CCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEE
Confidence 99999999998 6 999999999999 9999999999999985
No 92
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.65 E-value=7.6e-18 Score=132.35 Aligned_cols=71 Identities=24% Similarity=0.548 Sum_probs=64.0
Q ss_pred ccCCCCccccccccchhhhccc-cCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 46 VSELDKDMLCPICMQIIKEAFL-TACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~-l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
.+.+++++.|+||++.|.+|+. ++|||+||+.||.+|+... ..||.||.++...++.+|..+..+++.+..
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 3566788999999999999998 9999999999999999987 699999999999999999988888777654
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=151.18 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=116.6
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEccccccCC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR---DDQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p---~~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
.++..+++|+.|+.+.+|++... ..... . .|...|.+++|+| ++.+|++++.|+.|++||+..+....
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~---~~~~~-~-----~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 248 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNM---ALRWE-T-----NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK 248 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTT---EEEEE-E-----ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred CCCCEEEEEccCCeEEEEECccC---ceeee-c-----CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence 45667888999999999998532 22221 2 6788999999999 89999999999999999998861110
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEecCCCcEEEEeCCCC-------------------cceeecccccCcEE
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSDYEGIVTVWDVTTQ-------------------QSVMEYEEHEKRAW 472 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~~~-------------------~~~~~~~~h~~~v~ 472 (495)
. ........|...|++++|+|+ +. +|++|+.||.|++||++++ ..+..+.+|...|+
T Consensus 249 -~-~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 249 -G-FASVSEKAHKSTVWQVRHLPQ-NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp -E-EEEEEEECCSSCEEEEEEETT-EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred -c-eeeeccCCCcCCEEEEEECCC-CCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 0 000112268889999999999 66 8999999999999999754 35677889999999
Q ss_pred EEEeecCCCCeEE-EeeCCCcEeC
Q 048199 473 SVDFSRTEPSMLV-SGSDDCKVLY 495 (495)
Q Consensus 473 ~v~~~~~~g~~l~-s~s~D~~v~l 495 (495)
+++|+| ++.+|+ |++.|+.|+|
T Consensus 326 ~~~~s~-~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 326 SLDWSP-DKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp EEEECS-SSTTEEEEEETTSEEEE
T ss_pred EEEEcC-CCCeEEEEecCCCcEEE
Confidence 999999 888888 8999999985
No 94
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.8e-16 Score=155.13 Aligned_cols=162 Identities=10% Similarity=0.031 Sum_probs=121.0
Q ss_pred CCcccccccc-c-cccCcccchhhHHhhhhhhhcccCc---eEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 048199 326 HTKQESDKNI-I-HREGYNAGLADFQSVLTTFTRYSRL---RVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRI 400 (495)
Q Consensus 326 ~~~~~~~~~~-~-~~~~~~~g~~d~~~~lw~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i 400 (495)
|...+....+ . ++..+++|+.|++++||++...... ..... .+|.+.|++++|+|++++|++++.|++|
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~s~dg~i 135 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT------YDCSSTVTQITMIPNFDAFAVSSKDGQI 135 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE------EECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee------ccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 3333344333 3 4678899999999999998642111 11111 1588999999999999999999999999
Q ss_pred EEEEcc---ccccCCCCcCCCeeec---C--CCCCeEEEE--EcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc--cc
Q 048199 401 KVFDFA---SVVNEPADVHCPVVEM---P--TRSKLSCLS--WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE--HE 468 (495)
Q Consensus 401 ~vwd~~---~~~~~~~~~~~~~~~~---~--~~~~i~~~~--~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~--h~ 468 (495)
++||+. .+..........+..+ . +...+.++. |+++ +.+|++|+.||.|++||++++..+..+.+ |.
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~ 214 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQIIENSPRH 214 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEEECCGGG
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCC
Confidence 999995 3200000000011111 1 556677777 5677 88999999999999999999999999998 89
Q ss_pred CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 469 KRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 469 ~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+.|++++|+| ++.+|++|+.||.|+|
T Consensus 215 ~~v~~~~~s~-~~~~l~s~~~dg~i~i 240 (437)
T 3gre_A 215 GAVSSICIDE-ECCVLILGTTRGIIDI 240 (437)
T ss_dssp CCEEEEEECT-TSCEEEEEETTSCEEE
T ss_pred CceEEEEECC-CCCEEEEEcCCCeEEE
Confidence 9999999999 9999999999999875
No 95
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.4e-15 Score=151.69 Aligned_cols=144 Identities=11% Similarity=0.129 Sum_probs=122.6
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
.+.....++.|..|+.+.+|++... ..+..+. +|...|.+++|+|++++|++++.|+.|++||+..+
T Consensus 213 ~~~~~~~~~~~~~~g~i~~~d~~~~---~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----- 279 (425)
T 1r5m_A 213 EWVDDDKFVIPGPKGAIFVYQITEK---TPTGKLI-----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG----- 279 (425)
T ss_dssp EEEETTEEEEECGGGCEEEEETTCS---SCSEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----
T ss_pred EEcCCCEEEEEcCCCeEEEEEcCCC---ceeeeec-----cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----
Confidence 3344556788889999999998532 2333444 78899999999999999999999999999999886
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
........|...|.+++|+|+ + +|++++.||.|++||++++..+..+..|...|.+++|+| ++.+|++++.||.|
T Consensus 280 --~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 280 --NSQNCFYGHSQSIVSASWVGD-D-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQV 354 (425)
T ss_dssp --SCSEEECCCSSCEEEEEEETT-T-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCE
T ss_pred --ccceEecCCCccEEEEEECCC-C-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeE
Confidence 222333457889999999999 6 999999999999999999999999999999999999999 99999999999998
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
+|
T Consensus 355 ~i 356 (425)
T 1r5m_A 355 NV 356 (425)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 96
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.65 E-value=1.4e-15 Score=151.80 Aligned_cols=142 Identities=15% Similarity=0.249 Sum_probs=118.9
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
++..+++|+.|+.+.+|++.. ....+..+. +|.+.|.+++|+|++.+|++|+.|++|++||+.++
T Consensus 185 ~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-------- 249 (401)
T 4aez_A 185 NRHVLSSGSRSGAIHHHDVRI--ANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-------- 249 (401)
T ss_dssp ETTEEEEEETTSEEEEEETTS--SSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS--------
T ss_pred CCCEEEEEcCCCCEEEEeccc--CcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC--------
Confidence 566788999999999999852 223344444 79999999999999999999999999999999986
Q ss_pred CCee-ecCCCCCeEEEEEcCCCCCEEEEec--CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEE--eeCCC
Q 048199 417 CPVV-EMPTRSKLSCLSWNKFSKNRIASSD--YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVS--GSDDC 491 (495)
Q Consensus 417 ~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~--~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s--~s~D~ 491 (495)
.+.. ...|...|.+++|+|++..++++|+ .||.|++||+.++..+..+. |...|.+++|+| ++.+|++ |+.||
T Consensus 250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~g~~dg 327 (401)
T 4aez_A 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSP-HSKEIMSTHGFPDN 327 (401)
T ss_dssp SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECTTTC
T ss_pred CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECC-CCCeEEEEeecCCC
Confidence 3333 3367889999999998677888866 89999999999999998886 667899999999 9999998 44899
Q ss_pred cEeC
Q 048199 492 KVLY 495 (495)
Q Consensus 492 ~v~l 495 (495)
.|+|
T Consensus 328 ~i~v 331 (401)
T 4aez_A 328 NLSI 331 (401)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 9875
No 97
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.64 E-value=2.9e-17 Score=134.86 Aligned_cols=71 Identities=23% Similarity=0.519 Sum_probs=63.2
Q ss_pred ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCcc-CCCcchHHHHHHHHHHhH
Q 048199 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTN-NQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~-~~l~~n~~l~~~v~~~~~ 116 (495)
+..+++.+.|+||++.|.+|++++|||+||+.||.+|+... ..||.||.++.. .++.+|+.+.++++.+..
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred HHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 34557789999999999999999999999999999999855 499999999987 789999999999988754
No 98
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.64 E-value=1.8e-15 Score=150.92 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=117.6
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
+..+++++.|+.+.+|++.. ......+.. .|...|.+++|+|++.+|++|+.|+.|++||+.++ ..
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~---~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~ 168 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADS---GSVSALAET----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-------TK 168 (401)
T ss_dssp TTSEEEEEETTEEEEEETTT---CCEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------CE
T ss_pred CCCEEEEECCCeEEEeeCCC---CcEeEeeec----CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-------eE
Confidence 45677888999999999843 223333332 47899999999999999999999999999999886 22
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC-CCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT-TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
......|...|.+++|+ +.+|++|+.||.|++||++ .+..+..+.+|...|.+++|+| ++.+|++|+.|+.|++
T Consensus 169 ~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~i 243 (401)
T 4aez_A 169 LRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQI 243 (401)
T ss_dssp EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred EEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEE
Confidence 22333688899999995 5699999999999999999 4677889999999999999999 9999999999999975
No 99
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=9e-18 Score=128.42 Aligned_cols=67 Identities=30% Similarity=0.758 Sum_probs=58.7
Q ss_pred ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcC------CCCCCCCCCcCccCCCcchHHHHHH
Q 048199 44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN------KSDCPCCGHYLTNNQLYPNFLLDKL 110 (495)
Q Consensus 44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~------~~~CP~Cr~~~~~~~l~~n~~l~~~ 110 (495)
...+.+.+.+.|+||++.|.+|+.++|||+||+.||.+|+.. ...||.||.++..+++.+|+.+.++
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 445677889999999999999999999999999999999987 5689999999998888888765443
No 100
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.64 E-value=7e-17 Score=138.28 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=64.7
Q ss_pred ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC-CCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK-SDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
...+.+.+.||||+++|+|||+++|||+||+.||.+|+... ..||+||.++...+|.||..+.++++.+..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999864 469999999999999999999999998854
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.64 E-value=1e-15 Score=150.20 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=103.9
Q ss_pred chhhHHhhhhhhhcccCc------------eE-EEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc-EEEEEccccc
Q 048199 344 GLADFQSVLTTFTRYSRL------------RV-IAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR-IKVFDFASVV 409 (495)
Q Consensus 344 g~~d~~~~lw~~~~~~~~------------~~-~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~-i~vwd~~~~~ 409 (495)
|..|+.+++|++...... .+ +..+. +|.+.|++++|+|++.+|++|+.|++ |+|||+.++
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~- 228 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-----AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG- 228 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEEC-----CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEE-----ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-
Confidence 678889999998532100 01 33333 89999999999999999999999999 999999986
Q ss_pred cCCCCcCCCeeec--C-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc--eeeccc------------------
Q 048199 410 NEPADVHCPVVEM--P-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS--VMEYEE------------------ 466 (495)
Q Consensus 410 ~~~~~~~~~~~~~--~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~--~~~~~~------------------ 466 (495)
..+..+ + |...|++++|+|+ +.+|++|+.|++|+|||+..+.. ...+.+
T Consensus 229 -------~~~~~~~~g~h~~~v~~~~~s~~-~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (355)
T 3vu4_A 229 -------VLVREFRRGLDRADVVDMKWSTD-GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKL 300 (355)
T ss_dssp -------CEEEEEECTTCCSCEEEEEECTT-SCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEEC
T ss_pred -------cEEEEEEcCCCCCcEEEEEECCC-CCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEe
Confidence 333333 3 8889999999999 99999999999999999976431 111111
Q ss_pred ---ccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 467 ---HEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 467 ---h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+......++|++ ++.+|++++.||.++
T Consensus 301 ~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 301 SVDKHVRGCKIAWIS-ESSLVVVWPHTRMIE 330 (355)
T ss_dssp CCCTTCCCCEEEESS-SSEEEEEETTTTEEE
T ss_pred ccCCCCCceEEEEeC-CCCEEEEEeCCCeEE
Confidence 122236689999 999999999999876
No 102
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-17 Score=127.01 Aligned_cols=66 Identities=26% Similarity=0.731 Sum_probs=58.5
Q ss_pred ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhcC------CCCCCCCCCcCccCCCcchHHHHH
Q 048199 44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN------KSDCPCCGHYLTNNQLYPNFLLDK 109 (495)
Q Consensus 44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~------~~~CP~Cr~~~~~~~l~~n~~l~~ 109 (495)
...+.+.+.+.|+||++.|.+|+.++|||+||+.||.+|+.. ...||.||..+..+++.+|+.+.+
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 11 GILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 445677889999999999999999999999999999999876 679999999999988988876543
No 103
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.2e-16 Score=154.39 Aligned_cols=142 Identities=7% Similarity=0.010 Sum_probs=120.2
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
.++..+++|+.|+.+.+|++... ..+..+. +|...|.++.|+|++ +|++++.|+.|++||+.++
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~-----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------- 320 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNG---NSQNCFY-----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN------- 320 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSB---SCSEEEC-----CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-------
T ss_pred CCCCEEEEEcCCCEEEEEECCCC---ccceEec-----CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-------
Confidence 34566888999999999998532 2233443 688999999999999 9999999999999999886
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--------------------ceeecccccC--cEEE
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--------------------SVMEYEEHEK--RAWS 473 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--------------------~~~~~~~h~~--~v~~ 473 (495)
........|...+.+++|+|+ +.+|++|+.||.|++||+.++. .+..+.+|.. .|++
T Consensus 321 ~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 399 (425)
T 1r5m_A 321 TLLALSIVDGVPIFAGRISQD-GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD 399 (425)
T ss_dssp EEEEEEECTTCCEEEEEECTT-SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred cEeEecccCCccEEEEEEcCC-CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence 222233357789999999999 8999999999999999999887 8899999976 9999
Q ss_pred EEeecCCCCeEEEeeCCCcEeC
Q 048199 474 VDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 474 v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++|+| ++.+|++++.||.|+|
T Consensus 400 ~~~s~-~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 400 LSWNC-AGNKISVAYSLQEGSV 420 (425)
T ss_dssp EEECT-TSSEEEEEESSSCCEE
T ss_pred EEccC-CCceEEEEecCceEEE
Confidence 99999 9999999999999875
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.64 E-value=7.6e-16 Score=153.38 Aligned_cols=148 Identities=9% Similarity=0.040 Sum_probs=104.3
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
++..+++|++|++++|||+.. ...+..+. +|...|.+++|+|++ .+|++++.|++|++||+.++.......
T Consensus 155 d~~~las~s~D~tv~~Wd~~~---~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTD---EGPILAGY-----PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEET---TEEEEEEE-----ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred CCCEEEEEECCCeEEEEECCC---Cceeeeec-----CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 567889999999999999842 23344443 678899999999987 489999999999999998652110000
Q ss_pred C------------------CCeeecCCCCCeEEE----------------------------------------------
Q 048199 416 H------------------CPVVEMPTRSKLSCL---------------------------------------------- 431 (495)
Q Consensus 416 ~------------------~~~~~~~~~~~i~~~---------------------------------------------- 431 (495)
. ......+|...+.++
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 0 000000111111111
Q ss_pred ---------------EEcCC-CCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 432 ---------------SWNKF-SKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 432 ---------------~~~p~-~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
.|+|. ++.++++|+.||+|+|||+.++..+..+.+|..+|++|+|+| +|.+||++++||.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGSVL 383 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSEEE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCeE
Confidence 22221 234667888899999999998888888888999999999999 99999999999864
No 105
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.1e-15 Score=165.04 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=122.1
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
+..+++|+.|+++++|++.. .....+..+. +|...|++++|+|+ +.+|++|+.|++|++||+..+. .
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~-~~~~~~~~~~-----~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~-----~ 135 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEEN-GRWSQIAVHA-----VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-----T 135 (753)
T ss_dssp CSEEEEEETTSCEEEEEEET-TEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS-----C
T ss_pred CCEEEEEeCCCeEEEEECCC-Cccccccccc-----CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC-----C
Confidence 66789999999999999853 2222344444 79999999999998 9999999999999999998761 1
Q ss_pred CCCeeecCCCCCeEEEEEcCC------------CCCEEEEecCCCcEEEEeCCCC----cceeecccccCcEEEEEeecC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKF------------SKNRIASSDYEGIVTVWDVTTQ----QSVMEYEEHEKRAWSVDFSRT 479 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~------------~~~~l~sg~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~ 479 (495)
........|...|.+++|+|. ++.+|++|+.||.|++||++++ ..+..+.+|...|++++|+|
T Consensus 136 ~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 214 (753)
T 3jro_A 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP- 214 (753)
T ss_dssp CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-
T ss_pred cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-
Confidence 233344578889999999994 3889999999999999999876 55678889999999999999
Q ss_pred C---CCeEEEeeCCCcEeC
Q 048199 480 E---PSMLVSGSDDCKVLY 495 (495)
Q Consensus 480 ~---g~~l~s~s~D~~v~l 495 (495)
+ +.+|++|+.||.|++
T Consensus 215 ~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 215 TVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp CCSSSEEEEEEESSSCEEE
T ss_pred CCCCCCEEEEEecCCEEEE
Confidence 7 899999999999875
No 106
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.2e-15 Score=152.37 Aligned_cols=162 Identities=19% Similarity=0.352 Sum_probs=123.8
Q ss_pred CCccccccccc-c-ccCcccchhhHHhhhhhhhcccCce-EEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEE
Q 048199 326 HTKQESDKNII-H-REGYNAGLADFQSVLTTFTRYSRLR-VIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIK 401 (495)
Q Consensus 326 ~~~~~~~~~~~-~-~~~~~~g~~d~~~~lw~~~~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~ 401 (495)
+...+....+. + +..+++|+.|+.+++|++....... ....+....+.+|...|.+++|+|+ +.+|++++.|+.|+
T Consensus 112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 191 (416)
T 2pm9_A 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS 191 (416)
T ss_dssp SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE
T ss_pred CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE
Confidence 33333333333 3 5678899999999999986432000 0000111223378999999999998 78999999999999
Q ss_pred EEEccccccCCCCcCCCeeecC-------CCCCeEEEEEcCCCCCEEEEecCCC---cEEEEeCCCC-cceeecc-cccC
Q 048199 402 VFDFASVVNEPADVHCPVVEMP-------TRSKLSCLSWNKFSKNRIASSDYEG---IVTVWDVTTQ-QSVMEYE-EHEK 469 (495)
Q Consensus 402 vwd~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~p~~~~~l~sg~~dg---~v~iwd~~~~-~~~~~~~-~h~~ 469 (495)
+||+.++ ..+..+. |...+.+++|+|++..+|++++.|+ .|++||++++ ..+..+. +|..
T Consensus 192 iwd~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~ 263 (416)
T 2pm9_A 192 IWDLKAK--------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK 263 (416)
T ss_dssp EEETTTT--------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS
T ss_pred EEECCCC--------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC
Confidence 9999886 2222222 2678999999999557999999999 9999999986 6788888 9999
Q ss_pred cEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 470 RAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 470 ~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.|++++|+|.++.+|++++.|+.|+|
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred ceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 99999999867899999999999875
No 107
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2e-15 Score=144.32 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=116.0
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
++..+++|+.|+.+.+|+.. ..+..+.. .|...|.+++|+|++. |++++.|+.|++||+.++
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~----~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-------- 215 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQND-----KVIKTFSG----IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-------- 215 (313)
T ss_dssp TTTEEEEEETTSCEEEEETT-----EEEEEECS----SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC--------
T ss_pred CCCEEEEEECCCCEEEEecC-----ceEEEEec----cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch--------
Confidence 46678889999999999842 23444441 3889999999999988 889999999999999886
Q ss_pred CCee-ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 417 CPVV-EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 417 ~~~~-~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..+. ...|...|++++|+|+ + .|++|+.||.|++||++++..+..+..|...|++++|+| ++. +++++.||.|+|
T Consensus 216 ~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i 291 (313)
T 3odt_A 216 DVLRTYEGHESFVYCIKLLPN-G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRI 291 (313)
T ss_dssp CEEEEEECCSSCEEEEEECTT-S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEE
T ss_pred hhhhhhhcCCceEEEEEEecC-C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEE
Confidence 2333 3368889999999999 6 689999999999999999999999999999999999999 887 667999999875
No 108
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.63 E-value=1.1e-15 Score=166.55 Aligned_cols=145 Identities=16% Similarity=0.148 Sum_probs=124.1
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
.+++..+++|+.|+.+.||++. ....+..+. +|.+.|++++|+|++++|++++.|++|++||+.++
T Consensus 22 sp~~~~la~~~~~g~v~iwd~~---~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~------ 87 (814)
T 3mkq_A 22 HPTEPWVLTTLYSGRVEIWNYE---TQVEVRSIQ-----VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG------ 87 (814)
T ss_dssp CSSSSEEEEEETTSEEEEEETT---TTEEEEEEE-----CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC------
T ss_pred CCCCCEEEEEeCCCEEEEEECC---CCceEEEEe-----cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------
Confidence 4456678888899999999974 234455555 78999999999999999999999999999999887
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
........|.+.|++++|+|+ +.+|++|+.||.|++||+.++ .....+.+|...|.+++|+|.++.+|++++.||.|
T Consensus 88 -~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 88 -EKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp -CEEEEEECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred -cEEEEEecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 222333468889999999999 889999999999999999987 67788899999999999998667899999999998
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
++
T Consensus 166 ~v 167 (814)
T 3mkq_A 166 KV 167 (814)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 109
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.62 E-value=9.3e-16 Score=149.53 Aligned_cols=147 Identities=13% Similarity=0.228 Sum_probs=117.8
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEE----EccCCCEEEEEeCCCcEEEEEccccccC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIE----FDRDDQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~----~~p~~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
.++..+++|+.|+.+++|++.... ..+..+.... ..+...|+++. |+|++++|++++.|+.|++||++++
T Consensus 127 ~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--- 200 (357)
T 3i2n_A 127 EGAPEIVTGSRDGTVKVWDPRQKD--DPVANMEPVQ-GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM--- 200 (357)
T ss_dssp -CCCEEEEEETTSCEEEECTTSCS--SCSEEECCCT-TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT---
T ss_pred CCccEEEEEeCCCeEEEEeCCCCC--CcceeccccC-CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC---
Confidence 345678899999999999986432 1233333100 01245899998 7889999999999999999999986
Q ss_pred CCCcCCCeeecCCCCCeEEEEEcC---CCCCEEEEecCCCcEEEEeCCCCcceeecc-----cccCcEEEEEeecCCCC-
Q 048199 412 PADVHCPVVEMPTRSKLSCLSWNK---FSKNRIASSDYEGIVTVWDVTTQQSVMEYE-----EHEKRAWSVDFSRTEPS- 482 (495)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~p---~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~~~~~g~- 482 (495)
.......+...|.+++|+| + +.+|++|+.||.|++||++++..+..+. +|...|++++|+| ++.
T Consensus 201 -----~~~~~~~~~~~v~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 273 (357)
T 3i2n_A 201 -----ALRWETNIKNGVCSLEFDRKDIS-MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRE 273 (357)
T ss_dssp -----EEEEEEECSSCEEEEEESCSSSS-CCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEE
T ss_pred -----ceeeecCCCCceEEEEcCCCCCC-CCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCc
Confidence 3345567888999999999 7 8999999999999999999887776665 8999999999999 877
Q ss_pred eEEEeeCCCcEeC
Q 048199 483 MLVSGSDDCKVLY 495 (495)
Q Consensus 483 ~l~s~s~D~~v~l 495 (495)
+|++|+.||.|+|
T Consensus 274 ~l~~~~~dg~i~i 286 (357)
T 3i2n_A 274 LFLTAGGAGGLHL 286 (357)
T ss_dssp EEEEEETTSEEEE
T ss_pred EEEEEeCCCcEEE
Confidence 8999999999875
No 110
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.62 E-value=3.9e-15 Score=149.45 Aligned_cols=140 Identities=16% Similarity=0.265 Sum_probs=114.6
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
...++.|. |.+|+||+... .+...+..+. +|...|++|+|+|+|++|++|+.|++|+|||+.++ ..
T Consensus 116 ~n~lAvgl-d~tV~lWd~~t-g~~~~~~~~~-----~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-------~~ 181 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASS-GDILQLLQME-----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------KR 181 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTT-CCEEEEEECC-----STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EE
T ss_pred CCEEEEEe-CCEEEEEECCC-CCEEEEEEec-----CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-------cE
Confidence 34455665 78999999843 2222333333 78899999999999999999999999999999987 22
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-CcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.....+|...+.++.|+ +.+|++|+.|+.+++||... ...+..+.+|...+..+.|+| ++.++++++.|+.|+|
T Consensus 182 ~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNV 256 (420)
T ss_dssp EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred EEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceE
Confidence 33344688889999987 56999999999999999986 456688899999999999999 9999999999999874
No 111
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.62 E-value=4.8e-15 Score=150.59 Aligned_cols=159 Identities=15% Similarity=0.168 Sum_probs=124.2
Q ss_pred CCCccccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEc--cCCCEEEEEeCCCcEEE
Q 048199 325 PHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFD--RDDQLFATAGVSRRIKV 402 (495)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~--p~~~~l~s~s~d~~i~v 402 (495)
.+...+....+.....+++|+.|+++++|++. ....+..+. +|.+.|.+++|+ +++.+|++++.|++|++
T Consensus 160 ~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~---~~~~~~~~~-----~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v 231 (464)
T 3v7d_B 160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIK---KGCCTHVFE-----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231 (464)
T ss_dssp CCSSCEEEEEECSTTEEEEEETTSCEEEEETT---TTEEEEEEC-----CCSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC---CCcEEEEEC-----CCCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence 34444444444444578899999999999984 334455555 799999999999 47789999999999999
Q ss_pred EEccccccCCCCcC----------------CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199 403 FDFASVVNEPADVH----------------CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE 466 (495)
Q Consensus 403 wd~~~~~~~~~~~~----------------~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~ 466 (495)
||+........... ......+|...+.++.. + +.+|++|+.||.|++||++++..+..+.+
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 308 (464)
T 3v7d_B 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--H-GNIVVSGSYDNTLIVWDVAQMKCLYILSG 308 (464)
T ss_dssp EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE--E-TTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC--C-CCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 99987621110000 01123357777887754 4 78999999999999999999999999999
Q ss_pred ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 467 HEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 467 h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|...|++++|+| ++.+|++|+.||.|++
T Consensus 309 ~~~~v~~~~~~~-~~~~l~sg~~dg~i~v 336 (464)
T 3v7d_B 309 HTDRIYSTIYDH-ERKRCISASMDTTIRI 336 (464)
T ss_dssp CSSCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred CCCCEEEEEEcC-CCCEEEEEeCCCcEEE
Confidence 999999999999 9999999999999975
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.2e-15 Score=151.50 Aligned_cols=151 Identities=15% Similarity=0.082 Sum_probs=118.6
Q ss_pred ccccCc-ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC
Q 048199 336 IHREGY-NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 336 ~~~~~~-~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
.++..+ ++|+.|++++||++... ....+..+.. ..|...|.+++|+|++.+|++++.|+.|++|++..+.....
T Consensus 112 ~d~~~l~~~~~~dg~v~iwd~~~~-~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~- 186 (450)
T 2vdu_B 112 SDESRLIACADSDKSLLVFDVDKT-SKNVLKLRKR---FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF- 186 (450)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECSS-SSSCEEEEEE---EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC-
T ss_pred CCCCEEEEEECCCCeEEEEECcCC-CCceeeeeec---ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc-
Confidence 445554 78999999999998510 1222333321 15678899999999999999999999999999987611100
Q ss_pred cCCCeeecCCCCCeEEEEEcCC--CCCEEEEecCCCcEEEEeCCCCcceee-cccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKF--SKNRIASSDYEGIVTVWDVTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~--~~~~l~sg~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
......+|...|++++|+|+ ++.+|++|+.|++|++||++++..+.. +.+|...|++++|+ ++.+|++|+.|+
T Consensus 187 --~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~ 262 (450)
T 2vdu_B 187 --TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDD 262 (450)
T ss_dssp --CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--STTEEEEEESSS
T ss_pred --cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--CCCEEEEEeCCC
Confidence 01122357889999999997 356999999999999999999998887 66899999999999 889999999999
Q ss_pred cEeC
Q 048199 492 KVLY 495 (495)
Q Consensus 492 ~v~l 495 (495)
+|+|
T Consensus 263 ~v~v 266 (450)
T 2vdu_B 263 KIFA 266 (450)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9975
No 113
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.62 E-value=8.7e-16 Score=154.85 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=99.6
Q ss_pred cCCCcEEEEEEccCCCEEE----EEeCCCcEEEEEccccccCCCCcCCC----eeecCCCCCeEEEEEcCCCCCEEEEec
Q 048199 374 HSANIVSSIEFDRDDQLFA----TAGVSRRIKVFDFASVVNEPADVHCP----VVEMPTRSKLSCLSWNKFSKNRIASSD 445 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~----s~s~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~p~~~~~l~sg~ 445 (495)
.|.+.|++++|+|++++|+ +|+.|++|+|||+.+..........+ ....+|...|++++|+|+.+.+|++|+
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4677899999999999999 88999999999997641100000011 112247789999999998788999999
Q ss_pred CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 446 YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.||+|++||++++..+....+|...|++++|+| +|.+|++|+.||+|++
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~i 218 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQ 218 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEE
Confidence 999999999999877777778999999999999 9999999999999874
No 114
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=116.58 Aligned_cols=60 Identities=32% Similarity=0.686 Sum_probs=53.8
Q ss_pred cccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcch
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN 104 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 104 (495)
.++.+++.+.|+||++.|.+|+.+ +|||+||+.||.+|+.....||.||+++...++..|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 346778899999999999999987 999999999999999888899999999988777655
No 115
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-15 Score=168.03 Aligned_cols=152 Identities=8% Similarity=0.049 Sum_probs=118.8
Q ss_pred cccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-
Q 048199 333 KNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE- 411 (495)
Q Consensus 333 ~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~- 411 (495)
..+..+..+++++.|++++||++.. ...+..+. |.+.|++++|+|++++|++|+.|++|++||+.++...
T Consensus 64 l~fspg~~L~S~s~D~~v~lWd~~~---~~~~~~~~------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~ 134 (902)
T 2oaj_A 64 MRFVKGIYLVVINAKDTVYVLSLYS---QKVLTTVF------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS 134 (902)
T ss_dssp EEEETTTEEEEEETTCEEEEEETTT---CSEEEEEE------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEcCCCEEEEEECcCeEEEEECCC---CcEEEEEc------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 3333345688999999999999853 23344442 4578999999999999999999999999999876110
Q ss_pred CCC--cCCC-eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc------------------cCc
Q 048199 412 PAD--VHCP-VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH------------------EKR 470 (495)
Q Consensus 412 ~~~--~~~~-~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h------------------~~~ 470 (495)
+.. .... ....+|.+.|++++|+|+++.+|++|+.||+| +||++++..+..+.+| ...
T Consensus 135 ~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~ 213 (902)
T 2oaj_A 135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213 (902)
T ss_dssp EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCC
Confidence 000 0000 11235788999999999756799999999999 9999999888887765 578
Q ss_pred EEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 471 AWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 471 v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|++++|+| +|.+|+||+.||+|+|
T Consensus 214 V~~v~fsp-dg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 214 VIQSLYHP-NSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEECT-TSSEEEEEETTCCEEE
T ss_pred eEEEEEcC-CCCEEEEEECCCeEEE
Confidence 99999999 9999999999999975
No 116
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.62 E-value=9e-16 Score=152.27 Aligned_cols=149 Identities=13% Similarity=0.180 Sum_probs=119.1
Q ss_pred ccccC-cccchhhHHhhhhhhhc------ccCce--EEEEeec--cccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 048199 336 IHREG-YNAGLADFQSVLTTFTR------YSRLR--VIAELRH--GDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFD 404 (495)
Q Consensus 336 ~~~~~-~~~g~~d~~~~lw~~~~------~~~~~--~~~~~~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd 404 (495)
.++.. +++|+.|+.+.+|++.. ..... +...+.. .....|...|.+++|+|++ +|++++.|+.|++||
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE 213 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence 45666 88899999999999864 22211 1112210 0001588999999999999 999999999999999
Q ss_pred ccccccCCCCcCCCeeec-C---C---CCCeEEEEEcCCCCCEEEEecCC---CcEEEEeCCCCcceeeccc--------
Q 048199 405 FASVVNEPADVHCPVVEM-P---T---RSKLSCLSWNKFSKNRIASSDYE---GIVTVWDVTTQQSVMEYEE-------- 466 (495)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~-~---~---~~~i~~~~~~p~~~~~l~sg~~d---g~v~iwd~~~~~~~~~~~~-------- 466 (495)
++++ ..+..+ . | ...|.+++|+|+ +.+|++|+.| |.|++||++++..+..+.+
T Consensus 214 ~~~~--------~~~~~~~~~~~h~~~~~~i~~i~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~ 284 (397)
T 1sq9_A 214 LSTL--------RPLYNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 284 (397)
T ss_dssp TTTT--------EEEEEEECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred CCCC--------ceeEEEeccccccccCCccceEEECCC-CCEEEEEecCCCCceEEEEECCCCcccceeccCccccccc
Confidence 9876 233333 3 6 889999999999 8999999999 9999999999999999999
Q ss_pred -----ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 467 -----HEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 467 -----h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|...|.+++|+| ++.+|++++.|+.|+|
T Consensus 285 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 285 LGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRF 317 (397)
T ss_dssp -CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEE
T ss_pred ccccccCCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 999999999999 9999999999999875
No 117
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.62 E-value=1.1e-16 Score=128.01 Aligned_cols=72 Identities=25% Similarity=0.577 Sum_probs=63.8
Q ss_pred cccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccC----CCcchHHHHHHHHHHhH
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNN----QLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~----~l~~n~~l~~~v~~~~~ 116 (495)
.++.+++++.|+||++.|.+|+++ +|||+||+.||.+|+.....||.||..+... ++.+|..+.++++.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp EHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred chhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 345677889999999999999987 9999999999999999889999999999865 68899999999887743
No 118
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.61 E-value=9.6e-17 Score=135.47 Aligned_cols=71 Identities=27% Similarity=0.653 Sum_probs=63.5
Q ss_pred ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCccC-CCcchHHHHHHHHHHhH
Q 048199 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNN-QLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~-~l~~n~~l~~~v~~~~~ 116 (495)
+..+++.+.|+||++.|.+|++++|||+||+.||.+|+.... .||.||.++... .+.+|+.+.++++.+..
T Consensus 72 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred HHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 344667899999999999999999999999999999998764 899999999887 89999999999998753
No 119
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3.8e-15 Score=142.32 Aligned_cols=137 Identities=17% Similarity=0.156 Sum_probs=116.3
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
++..+++|+.|+.+.+|+. ...+..+. .|...|.++.|+| ++++|++++.|+.|++||....
T Consensus 113 ~~~~l~~~~~d~~i~~~d~-----~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------- 175 (313)
T 3odt_A 113 QDGVVISGSWDKTAKVWKE-----GSLVYNLQ-----AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV------- 175 (313)
T ss_dssp ETTEEEEEETTSEEEEEET-----TEEEEEEE-----CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-------
T ss_pred cCCEEEEEeCCCCEEEEcC-----CcEEEecc-----cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-------
Confidence 5667889999999999982 23455555 7899999999998 8999999999999999995443
Q ss_pred CCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 416 HCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 416 ~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
.......+...+.+++|+|+ +. |++|+.||.|++||++++..+..+.+|...|++++|+| ++ .|++++.||.|++
T Consensus 176 -~~~~~~~~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~i 250 (313)
T 3odt_A 176 -IKTFSGIHNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRI 250 (313)
T ss_dssp -EEEECSSCSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEE
T ss_pred -EEEEeccCcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEE
Confidence 12222237788999999999 65 99999999999999999999999999999999999999 87 6999999999875
No 120
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.7e-16 Score=158.58 Aligned_cols=143 Identities=10% Similarity=0.158 Sum_probs=114.4
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
++..+++|+.|+.+++|++.. ...+..+... .|.+.|++++|+|++.+|++|+.|++|++||++.+
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-------- 246 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRT---LERLQIIENS---PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-------- 246 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTT---CCEEEEEECC---GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--------
T ss_pred CCCEEEEEeCCCeEEEEeCCC---CeeeEEEccC---CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--------
Confidence 356788999999999999843 3445555510 27899999999999999999999999999999986
Q ss_pred CCeee--cCCCCCeEEEEEcCC---CCCEEEEecCCCcEEEEeCCCCcceeeccc-------------------------
Q 048199 417 CPVVE--MPTRSKLSCLSWNKF---SKNRIASSDYEGIVTVWDVTTQQSVMEYEE------------------------- 466 (495)
Q Consensus 417 ~~~~~--~~~~~~i~~~~~~p~---~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~------------------------- 466 (495)
..+.. ..|...|.+++|+|. ++.+|++|+.||.|+|||++++.++..+.+
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (437)
T 3gre_A 247 VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI 326 (437)
T ss_dssp EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence 33333 367778999966653 267999999999999999999887776654
Q ss_pred -ccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 467 -HEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 467 -h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|...|++++|+ ++.+|++|+.|+.|++
T Consensus 327 ~~~~~v~~l~~~--~~~~l~s~~~d~~i~~ 354 (437)
T 3gre_A 327 RSLNALSTISVS--NDKILLTDEATSSIVM 354 (437)
T ss_dssp CSGGGGCCEEEE--TTEEEEEEGGGTEEEE
T ss_pred ccCCceEEEEEC--CceEEEecCCCCeEEE
Confidence 55567888888 4589999999999975
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3.1e-15 Score=161.59 Aligned_cols=150 Identities=12% Similarity=0.145 Sum_probs=122.4
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEccccccCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRD--DQLFATAGVSRRIKVFDFASVVNEP 412 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~d~~i~vwd~~~~~~~~ 412 (495)
..++..+++|+.|+++++|++.. .....+..+. +|.+.|++++|+|+ +++|++|+.|++|++||+.++.
T Consensus 18 s~dg~~latg~~dg~I~vwd~~~-~~~~~~~~l~-----~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~--- 88 (753)
T 3jro_A 18 DYYGKRLATCSSDKTIKIFEVEG-ETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--- 88 (753)
T ss_dssp CSSSCCEEEEETTTEEEEEEEET-TEEEEEEEEC-----CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE---
T ss_pred CCCCCeEEEEECCCcEEEEecCC-CCCccceecc-----CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc---
Confidence 34567789999999999999842 2234444554 89999999999987 9999999999999999998861
Q ss_pred CCcCCCeeecCCCCCeEEEEEcCCC-CCEEEEecCCCcEEEEeCCCC--cceeecccccCcEEEEEeecC----------
Q 048199 413 ADVHCPVVEMPTRSKLSCLSWNKFS-KNRIASSDYEGIVTVWDVTTQ--QSVMEYEEHEKRAWSVDFSRT---------- 479 (495)
Q Consensus 413 ~~~~~~~~~~~~~~~i~~~~~~p~~-~~~l~sg~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~---------- 479 (495)
.........|...|++++|+|+. +.+|++|+.||.|++||++++ .....+.+|...|.+++|+|.
T Consensus 89 --~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 89 --WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp --EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred --ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 01223344688899999999984 679999999999999999877 345567789999999999994
Q ss_pred --CCCeEEEeeCCCcEeC
Q 048199 480 --EPSMLVSGSDDCKVLY 495 (495)
Q Consensus 480 --~g~~l~s~s~D~~v~l 495 (495)
++.+|++|+.||.|++
T Consensus 167 ~~d~~~l~sgs~dg~I~i 184 (753)
T 3jro_A 167 TKESRKFVTGGADNLVKI 184 (753)
T ss_dssp CGGGCCEEEEETTSCEEE
T ss_pred CCCCCEEEEEECCCeEEE
Confidence 4889999999999875
No 122
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.9e-14 Score=140.66 Aligned_cols=112 Identities=11% Similarity=0.156 Sum_probs=101.1
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
+|.+.|++++|+|++++|++++.|+.|++||+.++ ........|...|++++|+|+ +.+|++++.||.|++|
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-------ERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLW 101 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEE
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-------hhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEE
Confidence 89999999999999999999999999999999886 222233368889999999999 8999999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC-----CcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD-----CKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D-----~~v~l 495 (495)
|+.++..+..+. |...|.+++|+| ++.+|++++.+ +.|++
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~ 146 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINI 146 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEE
Confidence 999999998888 889999999999 99999999998 88764
No 123
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-16 Score=115.58 Aligned_cols=60 Identities=30% Similarity=0.687 Sum_probs=50.7
Q ss_pred cccCCCCccccccccchhhhccccC-CCCccchhhHHhhhcCC--CCCCCCCCcCcc-CCCcch
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLTA-CGHSFCYMCIITHLRNK--SDCPCCGHYLTN-NQLYPN 104 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l~-CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~-~~l~~n 104 (495)
..+.+.+++.|+||++.|.+|++++ |||+||+.||.+|+... ..||+||+++.. +.+.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 3467788999999999999999999 99999999999999865 689999998654 344444
No 124
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.60 E-value=2.8e-15 Score=145.38 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=117.7
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEc-cccccCC
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDF-ASVVNEP 412 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~-~~~~~~~ 412 (495)
..++..+++|+.|+.+++|++...........+. +|...|.+++|+|+++ +|++++.|+.|++||+ ..+
T Consensus 20 s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---- 90 (342)
T 1yfq_A 20 IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-----RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---- 90 (342)
T ss_dssp EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-----ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS----
T ss_pred cCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-----ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC----
Confidence 3456678899999999999986433222333333 7899999999999999 9999999999999999 775
Q ss_pred CCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC---------CcceeecccccCcEEEEEeecCCC
Q 048199 413 ADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT---------QQSVMEYEEHEKRAWSVDFSRTEP 481 (495)
Q Consensus 413 ~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~---------~~~~~~~~~h~~~v~~v~~~~~~g 481 (495)
....... |...|++++|+| +.+|++++.||.|++||+++ +.++..+. |...|++++|++ ++
T Consensus 91 ----~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~ 162 (342)
T 1yfq_A 91 ----SFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS-SR 162 (342)
T ss_dssp ----SEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS-SE
T ss_pred ----ceEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC-Cc
Confidence 2233345 888999999999 67999999999999999998 88888887 899999999998 65
Q ss_pred CeEEEeeCCCcEeC
Q 048199 482 SMLVSGSDDCKVLY 495 (495)
Q Consensus 482 ~~l~s~s~D~~v~l 495 (495)
|++++.|+.|++
T Consensus 163 --l~~~~~d~~i~i 174 (342)
T 1yfq_A 163 --LIVGMNNSQVQW 174 (342)
T ss_dssp --EEEEESTTEEEE
T ss_pred --EEEEeCCCeEEE
Confidence 999999999874
No 125
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.2e-15 Score=149.38 Aligned_cols=108 Identities=11% Similarity=0.232 Sum_probs=91.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC-----CeEEEEEcCCCCCEEEEecCCC
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS-----KLSCLSWNKFSKNRIASSDYEG 448 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~p~~~~~l~sg~~dg 448 (495)
+|.+.|++++|+|+|.+||+++.||+|++||.... +..+.|.. .+.+++|||| |.+|++|+.||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~----------l~~l~~~~~~~~~sv~svafSPD-G~~LAsgs~DG 151 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKM----------LTNLDSKGNLSSRTYHCFEWNPI-ESSIVVGNEDG 151 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEE----------EEECCCSSCSTTTCEEEEEECSS-SSCEEEEETTS
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCce----------eeeccCCCccccccEEEEEEcCC-CCEEEEEcCCC
Confidence 46889999999999999999999999999995442 12222332 5999999999 99999999999
Q ss_pred cEEEEeCCCCcc-------eeec----ccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 449 IVTVWDVTTQQS-------VMEY----EEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 449 ~v~iwd~~~~~~-------~~~~----~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+|+|||+.++.. +.++ .+|.++|.+++|+| +| |++++.|++|++
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrl 206 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFS 206 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEE
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEE
Confidence 999999998753 5666 67889999999999 88 888899999985
No 126
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.1e-16 Score=112.04 Aligned_cols=57 Identities=23% Similarity=0.621 Sum_probs=50.4
Q ss_pred cccCCCCccccccccchhhhccccCCCCccchhhHHhhhc-CCCCCCCCCCcCccCCC
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR-NKSDCPCCGHYLTNNQL 101 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l 101 (495)
.++.+++.+.|+||++.+.+|+.++|||+||+.||.+|+. ....||.||+++..+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 3466788999999999999999999999999999999995 45799999999887654
No 127
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.60 E-value=7e-15 Score=143.67 Aligned_cols=113 Identities=9% Similarity=0.284 Sum_probs=99.1
Q ss_pred cCCCcEEEEEEccC---CCEEEEEeCCCcEEEEEccccccCCCCcCCC-eeecCCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199 374 HSANIVSSIEFDRD---DQLFATAGVSRRIKVFDFASVVNEPADVHCP-VVEMPTRSKLSCLSWNKFSKNRIASSDYEGI 449 (495)
Q Consensus 374 ~h~~~V~~l~~~p~---~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~ 449 (495)
+|.+.|++++|+|+ |++|++|+.|+.|++||+.+.. ... .....|...|++++|+|+ +.+|++|+.||.
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~ 109 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCDKT 109 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcC-CCEEEEEcCCCc
Confidence 89999999999998 6999999999999999998730 111 234468899999999999 999999999999
Q ss_pred EEEEeCCCCcceeecccccCcEEEEEe--ecCCCCeEEEeeCCCcEeC
Q 048199 450 VTVWDVTTQQSVMEYEEHEKRAWSVDF--SRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~~h~~~v~~v~~--~~~~g~~l~s~s~D~~v~l 495 (495)
|++||+.++..+. +.+|...|++++| ++ ++.+|++++.|+.|++
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~v 155 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKF 155 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEE
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEE
Confidence 9999999887766 5679999999999 88 8899999999999875
No 128
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=144.71 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=127.1
Q ss_pred CCCcccccccc-c-cccCcccchhhHHhhhhhhhcccCceEEE-----EeeccccccCCCcEEEEEEcc-CCCEEEEEeC
Q 048199 325 PHTKQESDKNI-I-HREGYNAGLADFQSVLTTFTRYSRLRVIA-----ELRHGDIFHSANIVSSIEFDR-DDQLFATAGV 396 (495)
Q Consensus 325 ~~~~~~~~~~~-~-~~~~~~~g~~d~~~~lw~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~ 396 (495)
.|...+....+ . ++..+++|+.|+.+++|++.......... ........+|...|.+++|+| ++.+|++++.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 34444444444 3 56778899999999999985432222111 111111225899999999999 7889999999
Q ss_pred CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCC--CCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEE
Q 048199 397 SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFS--KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSV 474 (495)
Q Consensus 397 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v 474 (495)
|+.|++||+.++ .....+.+...+.++.|+|.+ +.++++|+.||.|++||++++..+..+.+|...|.++
T Consensus 121 d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 121 DKTLKVWDTNTL--------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp TSEEEEEETTTT--------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred CCeEEEeeCCCC--------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 999999999986 444555677889999999862 4499999999999999999999999999999999999
Q ss_pred EeecCCCC-eEEEeeCCCcEeC
Q 048199 475 DFSRTEPS-MLVSGSDDCKVLY 495 (495)
Q Consensus 475 ~~~~~~g~-~l~s~s~D~~v~l 495 (495)
+|+| ++. +|++|+.||.|++
T Consensus 193 ~~~~-~~~~ll~~~~~dg~i~i 213 (408)
T 4a11_B 193 SWSP-RYDYILATASADSRVKL 213 (408)
T ss_dssp EECS-SCTTEEEEEETTSCEEE
T ss_pred EECC-CCCcEEEEEcCCCcEEE
Confidence 9999 777 5999999999875
No 129
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.59 E-value=7.8e-15 Score=148.97 Aligned_cols=142 Identities=17% Similarity=0.241 Sum_probs=116.8
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
...++..+++|+.|+++++|++. ....+..+. +|.+.|++++|+|++ +|++|+.|++|++||+.++
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~---~~~~~~~~~-----~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~----- 193 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSI---NKKFLLQLS-----GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG----- 193 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETT---TTEEEEEEC-----CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-----
T ss_pred EEECCCEEEEEcCCCcEEEEECC---CCcEEEEEe-----CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-----
Confidence 34466788999999999999984 334566665 899999999999987 9999999999999999987
Q ss_pred CcCCCeeecCCCCCeEEEEEcC--CCCCEEEEecCCCcEEEEeCCCCcc-----------------------eeeccccc
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNK--FSKNRIASSDYEGIVTVWDVTTQQS-----------------------VMEYEEHE 468 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p--~~~~~l~sg~~dg~v~iwd~~~~~~-----------------------~~~~~~h~ 468 (495)
.......+|.+.|.+++|++ + +.+|++|+.||+|++||+.++.. +..+.+|.
T Consensus 194 --~~~~~~~~h~~~v~~l~~~~~~~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 194 --CCTHVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp --EEEEEECCCSSCEEEEEEEESSS-CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred --cEEEEECCCCCccEEEEEecCCC-CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 22223346888999999985 5 78999999999999999987652 55678899
Q ss_pred CcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 469 KRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 469 ~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..|.++. + ++.+|++|+.|+.|++
T Consensus 271 ~~v~~~~--~-~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 271 ASVRTVS--G-HGNIVVSGSYDNTLIV 294 (464)
T ss_dssp SCEEEEE--E-ETTEEEEEETTSCEEE
T ss_pred ceEEEEc--C-CCCEEEEEeCCCeEEE
Confidence 9998874 5 6799999999999875
No 130
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.3e-15 Score=149.33 Aligned_cols=152 Identities=7% Similarity=-0.010 Sum_probs=112.0
Q ss_pred cccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcccc
Q 048199 329 QESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASV 408 (495)
Q Consensus 329 ~~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~ 408 (495)
.....+.+++..+++++.|+.+++|+... .+..+. .+..--...|.+++|+|+|++|++|+.||+|+|||+..+
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 34445567788899999999999999532 233222 110000236999999999999999999999999999886
Q ss_pred ccCCCCcC-CCeee-----cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc---eeec-ccccCcEEEEEeec
Q 048199 409 VNEPADVH-CPVVE-----MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS---VMEY-EEHEKRAWSVDFSR 478 (495)
Q Consensus 409 ~~~~~~~~-~~~~~-----~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~---~~~~-~~h~~~v~~v~~~~ 478 (495)
.. .... ..+.. .+|.+.|.+++|+|+ + +++++.|++|++||+..+.. ..++ .+|...|++++|+
T Consensus 162 ~l--~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 162 SE--NTPEFYFESSIRLSDAGSKDWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp TT--TCCCCEEEEEEECSCTTCCCCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred cc--ccccceeeeeeecccccccccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 10 0000 01122 357789999999999 6 78888899999999987763 3456 4788999999998
Q ss_pred CCCCeEEEeeCCCcEeC
Q 048199 479 TEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 479 ~~g~~l~s~s~D~~v~l 495 (495)
|.+||+++ |++|++
T Consensus 236 --g~~LASa~-~~tIkL 249 (588)
T 2j04_A 236 --DYKVVLTC-PGYVHK 249 (588)
T ss_dssp --TTEEEEEC-SSEEEE
T ss_pred --CCEEEEEe-CCeEEE
Confidence 47999998 688875
No 131
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.59 E-value=3.6e-16 Score=130.67 Aligned_cols=65 Identities=31% Similarity=0.711 Sum_probs=53.7
Q ss_pred CCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHH
Q 048199 48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKT 114 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~ 114 (495)
.+++++.|+||++.|.+|++++|||+||..||.+|+.....||.||+++... ..++.++.+++.+
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~ 113 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK--TYSLVLDNCINKM 113 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE--EECHHHHHHHHHH
T ss_pred hccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC--CCccchhHHHHHH
Confidence 3456789999999999999999999999999999999989999999998643 2355555555443
No 132
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.59 E-value=1.4e-14 Score=140.50 Aligned_cols=149 Identities=12% Similarity=0.080 Sum_probs=117.4
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccc-cccCCCCcC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVH 416 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~ 416 (495)
+..+++|+.|+.+++|++..+...........-..+.|...|.+++|+|++ +++++.|+.|++||+.. +.. .
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~-----~ 184 (342)
T 1yfq_A 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD-----N 184 (342)
T ss_dssp TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC-----C
T ss_pred CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc-----c
Confidence 677889999999999998653221111111111122478999999999887 88999999999999988 511 1
Q ss_pred CCeeecCCCCCeEEEEEcC-CCCCEEEEecCCCcEEEEeCCCC------cceeecccccC---------cEEEEEeecCC
Q 048199 417 CPVVEMPTRSKLSCLSWNK-FSKNRIASSDYEGIVTVWDVTTQ------QSVMEYEEHEK---------RAWSVDFSRTE 480 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p-~~~~~l~sg~~dg~v~iwd~~~~------~~~~~~~~h~~---------~v~~v~~~~~~ 480 (495)
.......+...+.+++|+| + +.+|++|+.||.|++||++.. ..+..+.+|.. .|++++|+| +
T Consensus 185 ~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~ 262 (342)
T 1yfq_A 185 GTIEESGLKYQIRDVALLPKE-QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-R 262 (342)
T ss_dssp CEEEECSCSSCEEEEEECSGG-GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-T
T ss_pred ceeeecCCCCceeEEEECCCC-CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-C
Confidence 1223446778899999999 8 899999999999999999887 78888888865 999999999 9
Q ss_pred CCeEEEeeCCCcEeC
Q 048199 481 PSMLVSGSDDCKVLY 495 (495)
Q Consensus 481 g~~l~s~s~D~~v~l 495 (495)
+.+|++|+.||.|++
T Consensus 263 ~~~l~~~~~dg~i~v 277 (342)
T 1yfq_A 263 HKFLYTAGSDGIISC 277 (342)
T ss_dssp TCCEEEEETTSCEEE
T ss_pred CCEEEEecCCceEEE
Confidence 999999999999875
No 133
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6e-15 Score=149.52 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=115.6
Q ss_pred ccccCcccchhhHHhhhhhhhcccCce-EEEEeeccccccCCCcEEEEEEccC---CCEEEEEeCCCcEEEEEccccccC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLR-VIAELRHGDIFHSANIVSSIEFDRD---DQLFATAGVSRRIKVFDFASVVNE 411 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~p~---~~~l~s~s~d~~i~vwd~~~~~~~ 411 (495)
.++..+++|+.|+.+.+|++....... .+.. +.+|.+.|++++|+|+ +.+|++|+.|++|++||+.++
T Consensus 159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~--- 230 (450)
T 2vdu_B 159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEP-----ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC--- 230 (450)
T ss_dssp TTSSEEEEEETTSEEEEEETTSCCCSSCCCCC-----SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT---
T ss_pred CCCCEEEEEeCCCcEEEEecCCccccccccee-----eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC---
Confidence 455667788888888888874322111 1112 2379999999999999 999999999999999999876
Q ss_pred CCCcCCCee--ecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc----------------------
Q 048199 412 PADVHCPVV--EMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH---------------------- 467 (495)
Q Consensus 412 ~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h---------------------- 467 (495)
..+. ..+|...|++++|+ + +.+|++|+.|++|+|||+.++..+..+..+
T Consensus 231 -----~~~~~~~~~h~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T 2vdu_B 231 -----FIVDKWLFGHKHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303 (450)
T ss_dssp -----TCEEEECCCCSSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred -----ceeeeeecCCCCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccc
Confidence 2222 33688899999999 7 999999999999999999999988877632
Q ss_pred ---cCcEEEEEeecCCCCeEEEee-CCCcEeC
Q 048199 468 ---EKRAWSVDFSRTEPSMLVSGS-DDCKVLY 495 (495)
Q Consensus 468 ---~~~v~~v~~~~~~g~~l~s~s-~D~~v~l 495 (495)
...|.+++|+| ++.+|++++ .|+.|+|
T Consensus 304 ~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~i 334 (450)
T 2vdu_B 304 DIIEFAVSKIIKSK-NLPFVAFFVEATKCIII 334 (450)
T ss_dssp -CBCCCEEEEEECS-SSSEEEEEETTCSEEEE
T ss_pred ccceEEEEEEEEeC-CCCEEEEEECCCCeEEE
Confidence 35789999999 999999999 8998874
No 134
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.59 E-value=3.6e-15 Score=146.91 Aligned_cols=143 Identities=11% Similarity=0.076 Sum_probs=108.6
Q ss_pred ccccCc--ccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 336 IHREGY--NAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 336 ~~~~~~--~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
+++..+ ++|+.|.+++||++.. ...+..+ .|.+.|++++|+|+|++|++++. ..+.+|+..++..
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~~---~~~~~~~------~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~--- 209 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPSD---LTEKFEI------ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSC--- 209 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETTT---TEEEEEE------ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCE---
T ss_pred CCCCEEEEEECCCCCEEEEeECCC---CcEEEEe------CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcc---
Confidence 344444 3566889999999853 3444444 35678999999999999999985 4566777666510
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC----cEEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEE
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG----IVTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLV 485 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg----~v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~ 485 (495)
........|...|++++|+|+ +.++++++.|+ .+++||+..+.. ...+.+|...|++++|+| +|.+||
T Consensus 210 --~~~~~~~~~~~~v~~v~fspd-g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~la 285 (365)
T 4h5i_A 210 --IARKTDFDKNWSLSKINFIAD-DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAV 285 (365)
T ss_dssp --EEEECCCCTTEEEEEEEEEET-TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEE
T ss_pred --eeeeecCCCCCCEEEEEEcCC-CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceE
Confidence 011122356678999999999 88999998887 688999876543 456788999999999999 999999
Q ss_pred EeeCCCcEeC
Q 048199 486 SGSDDCKVLY 495 (495)
Q Consensus 486 s~s~D~~v~l 495 (495)
+|+.|++|+|
T Consensus 286 sgs~D~~V~i 295 (365)
T 4h5i_A 286 LASNDNSIAL 295 (365)
T ss_dssp EEETTSCEEE
T ss_pred EEcCCCEEEE
Confidence 9999999985
No 135
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.9e-16 Score=116.33 Aligned_cols=60 Identities=28% Similarity=0.585 Sum_probs=52.5
Q ss_pred cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHH
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLL 107 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l 107 (495)
+..++.+.|+||++.|.+|++++|||+||+.||.+|+.....||+||.++. ..+.+|..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHH
Confidence 345667899999999999999999999999999999988889999999986 567777544
No 136
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.6e-16 Score=113.20 Aligned_cols=57 Identities=32% Similarity=0.817 Sum_probs=50.4
Q ss_pred cccCCCCccccccccchhhhccccCCCCccchhhHHhhhc---CCCCCCCCCCcCccCCC
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR---NKSDCPCCGHYLTNNQL 101 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~---~~~~CP~Cr~~~~~~~l 101 (495)
..+.+++.+.|+||++.|.+|+.++|||+||+.||.+|+. ....||.||+++..+++
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4467788999999999999999999999999999999997 34689999999987654
No 137
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.58 E-value=1.1e-14 Score=158.55 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=103.8
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
+|.+.|++++|+|++.+|++++.|++|+|||+.++ ........|.+.|.+++|+|+ +.+|++|+.||.|+||
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-------VEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC-------ceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEE
Confidence 89999999999999999999999999999999886 222233368889999999999 8999999999999999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
|+.++..+..+.+|.+.|++++|+| ++.+|++++.||.|++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKL 123 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEE
Confidence 9999999999999999999999999 9999999999999874
No 138
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.57 E-value=1.6e-14 Score=145.62 Aligned_cols=138 Identities=18% Similarity=0.290 Sum_probs=114.9
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
+..+++|+.|+.+++|++...........+. +|...|.++.| ++++|++|+.|++|++||+.++ ..
T Consensus 223 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-------~~ 288 (435)
T 1p22_A 223 NGMMVTCSKDRSIAVWDMASPTDITLRRVLV-----GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-------EF 288 (435)
T ss_dssp TTEEEEEETTSCEEEEECSSSSCCEEEEEEC-----CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-------CE
T ss_pred CCEEEEeeCCCcEEEEeCCCCCCceeeeEec-----CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-------cE
Confidence 4567889999999999985433322223333 89999999999 7889999999999999999986 22
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
......|...|.++.|+ +.+|++|+.||.|++||++++.++..+.+|...|.+++| ++.+|++|+.||.|+|
T Consensus 289 ~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~v 360 (435)
T 1p22_A 289 VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKV 360 (435)
T ss_dssp EEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEE
T ss_pred EEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEE
Confidence 22333678889999996 679999999999999999999999999999999999999 5689999999999975
No 139
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.56 E-value=2.2e-14 Score=145.01 Aligned_cols=139 Identities=19% Similarity=0.255 Sum_probs=114.9
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCC
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPA 413 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~ 413 (495)
...++..+++|+.|+++++|++.. ...+..+. +|.+.|+++.|+ +++|++|+.|++|++||+.++
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~---~~~~~~~~-----~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~----- 189 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVT---GKCLRTLV-----GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG----- 189 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTT---CCEEEECC-----CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-----
T ss_pred EEEcCCEEEEEECCCcEEEEECCC---CcEEEEEc-----CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC-----
Confidence 445677889999999999999843 34455555 899999999997 669999999999999999886
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
.......+|...|.++.|+ +..|++|+.||+|++||+.++..+..+.+|...|.+++| ++.+|++|+.||.|
T Consensus 190 --~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 190 --ECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMV 261 (445)
T ss_dssp --EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCE
T ss_pred --cEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEE
Confidence 2222334678889999997 558999999999999999999999999999999999988 56789999999988
Q ss_pred eC
Q 048199 494 LY 495 (495)
Q Consensus 494 ~l 495 (495)
++
T Consensus 262 ~i 263 (445)
T 2ovr_B 262 KV 263 (445)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 140
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.56 E-value=3.6e-14 Score=135.90 Aligned_cols=139 Identities=17% Similarity=0.244 Sum_probs=111.7
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
..++.| .|++|+||++.. ...+..+. +.+|...|++++|+|++++|++|+.|++|++||+.++ ...
T Consensus 37 ~~lAvg-~D~tV~iWd~~t---g~~~~~~~---~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~-------~~~ 102 (318)
T 4ggc_A 37 NVLAVA-LDNSVYLWSASS---GDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------KRL 102 (318)
T ss_dssp SEEEEE-ETTEEEEEETTT---CCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT-------EEE
T ss_pred CEEEEE-eCCEEEEEECCC---CCEEEEEE---ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc-------eeE
Confidence 344445 588999999843 23333332 1278899999999999999999999999999999987 222
Q ss_pred eeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCC-cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQ-QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
....+|...+.++.+. +.++++|+.++.+++|+..++ ..+..+.+|...+..+.|.+ ++.+|++++.|++|+|
T Consensus 103 ~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i 176 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNV 176 (318)
T ss_dssp EEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred EEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeE
Confidence 3334677778777766 569999999999999999875 55678899999999999999 9999999999999875
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.56 E-value=1.1e-15 Score=144.90 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=63.3
Q ss_pred cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
..+.+.+.||||+++|+|||+++|||+||+.||.+|+...+ .||+||.+++..+|.||..+.++++.+..
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999998654 59999999999999999999999998854
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.56 E-value=8.8e-15 Score=147.51 Aligned_cols=146 Identities=11% Similarity=0.108 Sum_probs=108.5
Q ss_pred cccccCcc----cchhhHHhhhhhhhcc-----cCceEEEEeeccccccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEE
Q 048199 335 IIHREGYN----AGLADFQSVLTTFTRY-----SRLRVIAELRHGDIFHSANIVSSIEFDRD-DQLFATAGVSRRIKVFD 404 (495)
Q Consensus 335 ~~~~~~~~----~g~~d~~~~lw~~~~~-----~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd 404 (495)
..++..++ +|+.|++++||++... .....+..+. .+.+|.+.|++++|+|+ +.+|++++.|++|++||
T Consensus 101 spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD 178 (434)
T 2oit_A 101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK--LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ 178 (434)
T ss_dssp CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE--CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee--ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence 34556666 7899999999998643 1112222222 12278999999999997 88999999999999999
Q ss_pred ccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-------cCcEEEEEee
Q 048199 405 FASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-------EKRAWSVDFS 477 (495)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~~ 477 (495)
++++ ........|...|++++|+|+ +.+|++|+.||+|++||++ +.....+..| ...|.+++|+
T Consensus 179 ~~~~-------~~~~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 179 VTET-------VKVCATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp ESSS-------EEEEEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred cCCC-------cceeeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 9886 222334457788999999999 9999999999999999998 6555555433 3489999999
Q ss_pred cCCCCeEEE-eeCCCc
Q 048199 478 RTEPSMLVS-GSDDCK 492 (495)
Q Consensus 478 ~~~g~~l~s-~s~D~~ 492 (495)
+ ++.++++ ++.||.
T Consensus 250 ~-~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 250 G-TYVFAIVYAAADGT 264 (434)
T ss_dssp E-TTEEEEEEEETTCC
T ss_pred c-CceEEEEEccCCCc
Confidence 9 7766644 334543
No 143
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.56 E-value=3.6e-16 Score=126.15 Aligned_cols=70 Identities=33% Similarity=0.747 Sum_probs=60.6
Q ss_pred cCCCCccccccccchhhhccccCCCCccchhhHHhhhcCC---CCCCCCCCcCccCCCcchHHHHHHHHHHhH
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
+.+.+.+.|+||++.|.+|++++|||+||+.||.+|+... ..||.||.++...++.+|..+.++++.+..
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred HhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 4456678999999999999999999999999999999865 489999999999899888877777776643
No 144
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=123.51 Aligned_cols=69 Identities=23% Similarity=0.508 Sum_probs=58.3
Q ss_pred cCCCCccccccccchhhhccccCCCCccchhhHHhhhcC-CCCCCCCCCcCcc-------CCCcchHHHHHHHHHHh
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTN-------NQLYPNFLLDKLLKKTS 115 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~-------~~l~~n~~l~~~v~~~~ 115 (495)
..+.+++.|+||++.|.+|++++|||+||+.||.+|+.. ...||.||..+.. +++..|..+..+++++.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 455678999999999999999999999999999999976 5689999999864 55667777777776653
No 145
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.55 E-value=1.4e-15 Score=111.73 Aligned_cols=57 Identities=33% Similarity=0.807 Sum_probs=51.9
Q ss_pred CCCccccccccchhhhc-------cccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199 49 LDKDMLCPICMQIIKEA-------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF 105 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~P-------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~ 105 (495)
.++++.|+||++.|.+| +.++|||+||+.||.+|+.....||.||.++...++.+++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 45678999999999999 8899999999999999999889999999999988887764
No 146
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.55 E-value=9.2e-16 Score=124.52 Aligned_cols=74 Identities=32% Similarity=0.700 Sum_probs=66.4
Q ss_pred cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ 118 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~ 118 (495)
..+.+++.+.|+||++.|.+|+.++|||+||+.||.+|+.... .||.||.++...++.++..+.+.+..+...+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C 85 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKC 85 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEEC
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeEC
Confidence 4577889999999999999999999999999999999998765 9999999999888999999988888776544
No 147
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.55 E-value=5.4e-14 Score=141.78 Aligned_cols=139 Identities=19% Similarity=0.307 Sum_probs=116.0
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
++..+++|+.|+++++|++.. ...+..+. +|...|.++.|+ +.+|++|+.|++|++||+.++... .
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~-----~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~----~ 247 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNT---GEMLNTLI-----HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI----T 247 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSS---CCEEEEEC-----CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC----E
T ss_pred CCCEEEEEcCCCeEEEEECCC---CcEEEEEc-----CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc----e
Confidence 667789999999999999843 34455555 799999999996 459999999999999999886110 0
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
......+|...|.+++|+ +.+|++|+.||.|++||++++..+..+.+|...|.+++|+ +.+|++|+.||.|++
T Consensus 248 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~i 320 (435)
T 1p22_A 248 LRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRL 320 (435)
T ss_dssp EEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEE
T ss_pred eeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEE
Confidence 113345788899999994 7799999999999999999999999999999999999995 479999999999975
No 148
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.4e-15 Score=115.60 Aligned_cols=64 Identities=31% Similarity=0.662 Sum_probs=54.4
Q ss_pred cccccCCCCccccccccchhhh----ccccCCCCccchhhHHhhhcCC---CCCCCCCCcCccC---CCcchHH
Q 048199 43 EVGVSELDKDMLCPICMQIIKE----AFLTACGHSFCYMCIITHLRNK---SDCPCCGHYLTNN---QLYPNFL 106 (495)
Q Consensus 43 ~~~~~~~~~~l~C~IC~~~~~~----Pv~l~CGH~FC~~Ci~~~~~~~---~~CP~Cr~~~~~~---~l~~n~~ 106 (495)
+...+.+++.+.|+||++.|.+ |+.++|||+||+.||.+|+... ..||.||+++... .|..|+.
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~ 79 (88)
T 2ct2_A 6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLT 79 (88)
T ss_dssp CCSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTT
T ss_pred ccChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHH
Confidence 3455778889999999999999 9999999999999999999875 6999999998764 4555554
No 149
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-15 Score=110.92 Aligned_cols=52 Identities=23% Similarity=0.531 Sum_probs=47.0
Q ss_pred CCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCC
Q 048199 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQ 100 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 100 (495)
..+.+.|+||++.+.+|+.++|||+||+.||.+|+.....||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 3567889999999999999999999999999999998899999999987543
No 150
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.53 E-value=3.8e-14 Score=161.63 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=120.8
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC--CC---
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE--PA--- 413 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~--~~--- 413 (495)
..+++|+.|+.+++|++.. ...+..+. +|.+.|++++|+|++++|++++.|++|++||+.++... +.
T Consensus 714 ~~l~sg~~d~~v~vwd~~~---~~~~~~~~-----~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 785 (1249)
T 3sfz_A 714 LLLATGSNDFFLKLWDLNQ---KECRNTMF-----GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785 (1249)
T ss_dssp CEEEEEETTSCEEEEETTS---SSEEEEEC-----CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC
T ss_pred eEEEEEeCCCeEEEEECCC---cchhheec-----CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccc
Confidence 3467899999999999843 33455554 89999999999999999999999999999999765110 00
Q ss_pred ---C-----------cC---------------------------C--CeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199 414 ---D-----------VH---------------------------C--PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV 450 (495)
Q Consensus 414 ---~-----------~~---------------------------~--~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v 450 (495)
. .. . .....+|...+.+++|+|+ +.++++|+.||.|
T Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v 864 (1249)
T 3sfz_A 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCV 864 (1249)
T ss_dssp CC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS-TTEEEEECSSSCE
T ss_pred cccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC-CCEEEEEeCCCeE
Confidence 0 00 0 0011256778999999999 9999999999999
Q ss_pred EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++||+.++..+..+.+|...|++++|+| +|.+|++++.||.|++
T Consensus 865 ~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 865 ELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRV 908 (1249)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred EEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEE
Confidence 9999999999999999999999999999 9999999999999874
No 151
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.4e-15 Score=134.59 Aligned_cols=72 Identities=18% Similarity=0.384 Sum_probs=63.6
Q ss_pred cccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcCC--CCCCC--CCCcCccCCCcchHHHHHHHHHHhH
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNK--SDCPC--CGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~--~~CP~--Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
.++....++.||||+++|++||++ .|||+||+.||.+||... ..||+ |++.+...+|.+|..+.++++....
T Consensus 174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 345667889999999999999975 999999999999999865 47999 9999999999999999999887644
No 152
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-15 Score=106.44 Aligned_cols=49 Identities=35% Similarity=0.902 Sum_probs=43.9
Q ss_pred ccccCCCCccccccccchhhhccccCCCCccchhhHHhhhc---CCCCCCCC
Q 048199 44 VGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR---NKSDCPCC 92 (495)
Q Consensus 44 ~~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~---~~~~CP~C 92 (495)
..++.+++++.|+||++.|.+|+.++|||+||+.||.+|+. ....||.|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567888999999999999999999999999999999998 34689998
No 153
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.52 E-value=7.6e-14 Score=141.03 Aligned_cols=134 Identities=19% Similarity=0.316 Sum_probs=105.3
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
++..+++|+.|+.+++|++.. ...+..+. +|...|.++.+ ++++|++|+.|++|++||+.++
T Consensus 288 ~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-------- 349 (445)
T 2ovr_B 288 DGIHVVSGSLDTSIRVWDVET---GNCIHTLT-----GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG-------- 349 (445)
T ss_dssp CSSEEEEEETTSCEEEEETTT---CCEEEEEC-----CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------
T ss_pred CCCEEEEEeCCCeEEEEECCC---CCEEEEEc-----CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC--------
Confidence 455566777777777777642 23344444 67788887777 4568888888888888888775
Q ss_pred CCeeec----CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-----ccccCcEEEEEeecCCCCeEEEe
Q 048199 417 CPVVEM----PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-----EEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 417 ~~~~~~----~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
..+..+ .|...|++++|+ +.+|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+| ++.+|++|
T Consensus 350 ~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~ 425 (445)
T 2ovr_B 350 QCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVG 425 (445)
T ss_dssp CEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEE
T ss_pred cEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEc
Confidence 222222 277789999997 569999999999999999999998888 57889999999999 99999999
Q ss_pred eCCCc
Q 048199 488 SDDCK 492 (495)
Q Consensus 488 s~D~~ 492 (495)
+.||+
T Consensus 426 ~~dg~ 430 (445)
T 2ovr_B 426 SRNGT 430 (445)
T ss_dssp CSSSS
T ss_pred ccCCC
Confidence 99997
No 154
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.52 E-value=2.2e-15 Score=130.19 Aligned_cols=71 Identities=37% Similarity=0.821 Sum_probs=61.0
Q ss_pred ccCCCCccccccccchhhhcccc-CCCCccchhhHHhhhcC-CCCCCCCCCcCc-cCCCcchHHHHHHHHHHhH
Q 048199 46 VSELDKDMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRN-KSDCPCCGHYLT-NNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~l~~n~~l~~~v~~~~~ 116 (495)
.+.+.+.+.|+||++.|.+|+.+ +|||+||+.||.+|+.. ...||.||.++. .+.+.+|+.+.++++.+..
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 34567788999999999999987 99999999999999987 678999999985 4678999999999888754
No 155
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.52 E-value=4.2e-14 Score=148.47 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=119.2
Q ss_pred cccCcccchhhHHhhhhhhhccc-----CceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC----CcEEEEEccc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYS-----RLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS----RRIKVFDFAS 407 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d----~~i~vwd~~~ 407 (495)
++..+++|+.|+++++|++.... ....+..+. +|...|.+++|+|++++|++++.| +.|++||...
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~ 151 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-----VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN 151 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-----CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC
T ss_pred CCCEEEEecCCCEEEEEeCCCCcccccccccccchhh-----cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC
Confidence 56778899999999999984210 223344444 789999999999999999999988 6888888432
Q ss_pred cccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccC---cEEEEEeecCC-CCe
Q 048199 408 VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEK---RAWSVDFSRTE-PSM 483 (495)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~---~v~~v~~~~~~-g~~ 483 (495)
.......|...|++++|+|++..+|++|+.||.|++||+.+++.+..+.+|.. .|++++|+| + +.+
T Consensus 152 ---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 221 (615)
T 1pgu_A 152 ---------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEF 221 (615)
T ss_dssp ---------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCE
T ss_pred ---------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCE
Confidence 22233468889999999999434899999999999999999999999999999 999999999 8 999
Q ss_pred EEEeeCCCcEeC
Q 048199 484 LVSGSDDCKVLY 495 (495)
Q Consensus 484 l~s~s~D~~v~l 495 (495)
|++++.|+.|++
T Consensus 222 l~~~~~dg~i~v 233 (615)
T 1pgu_A 222 VITVGSDRKISC 233 (615)
T ss_dssp EEEEETTCCEEE
T ss_pred EEEEeCCCeEEE
Confidence 999999999874
No 156
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7.5e-15 Score=107.11 Aligned_cols=52 Identities=35% Similarity=0.810 Sum_probs=47.0
Q ss_pred cCCCCccccccccchhhhc-------cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 47 SELDKDMLCPICMQIIKEA-------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~P-------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+.+.+.+.|+||++.|.+| +.++|||+||+.||.+|+.....||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567788999999999998 789999999999999999988899999998753
No 157
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.50 E-value=6.9e-15 Score=105.68 Aligned_cols=55 Identities=25% Similarity=0.670 Sum_probs=47.4
Q ss_pred Cccccccccc-hhhhcc----ccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCCCcchH
Q 048199 51 KDMLCPICMQ-IIKEAF----LTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQLYPNF 105 (495)
Q Consensus 51 ~~l~C~IC~~-~~~~Pv----~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~ 105 (495)
+++.||||++ .|.+|+ +++|||+||+.||.+|+.. ...||.||+++...++.+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence 4678999999 999994 6899999999999999765 46899999999988876653
No 158
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.50 E-value=3.9e-15 Score=106.85 Aligned_cols=55 Identities=35% Similarity=0.834 Sum_probs=49.6
Q ss_pred Cccccccccchhhhc-------cccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199 51 KDMLCPICMQIIKEA-------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF 105 (495)
Q Consensus 51 ~~l~C~IC~~~~~~P-------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~ 105 (495)
+.+.|+||++.|.+| +.++|||+||..||.+|+.....||.||+++...++.+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 467899999999998 7889999999999999999888999999999888776654
No 159
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=101.62 Aligned_cols=48 Identities=31% Similarity=0.911 Sum_probs=42.5
Q ss_pred cccCCCCccccccccchhhhccccCCCCccchhhHHhhhc---CCCCCCCC
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR---NKSDCPCC 92 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~---~~~~CP~C 92 (495)
.++.+++.+.|+||++.+.+|++++|||+||+.||.+|+. ....||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3466788899999999999999999999999999999954 45689998
No 160
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.49 E-value=1.1e-13 Score=131.77 Aligned_cols=131 Identities=10% Similarity=0.000 Sum_probs=96.3
Q ss_pred hhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec
Q 048199 346 ADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR---DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM 422 (495)
Q Consensus 346 ~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 422 (495)
.|..|++|++.. ..+.+..+. +|...|+.++|+| ++.+|++++.|++|||||+.++ ..+..+
T Consensus 155 ~d~~V~~~~~s~--dG~~~~s~~-----~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG--------k~l~tL 219 (356)
T 2w18_A 155 SDQQVEVMTFAE--DGGGKENQF-----LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG--------QLLKKM 219 (356)
T ss_dssp TTCEEEEEEECT--TSCEEEEEE-----ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC--------CEEEEE
T ss_pred CCCcEEEEEECC--CCceeeeec-----cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC--------cEEEEE
Confidence 467888888742 223344444 7888899999998 7789999999999999999987 222222
Q ss_pred -CCC---CCeEEEEEcCCCCCEE------------EEecCCCcEEEEeCCCCcceeec-----ccccCcEEEEEeecCCC
Q 048199 423 -PTR---SKLSCLSWNKFSKNRI------------ASSDYEGIVTVWDVTTQQSVMEY-----EEHEKRAWSVDFSRTEP 481 (495)
Q Consensus 423 -~~~---~~i~~~~~~p~~~~~l------------~sg~~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~v~~~~~~g 481 (495)
+|. ..+.+++|+|+ +.++ ++|+.|++|++||..++..+..+ .+|...+.+.++ ++
T Consensus 220 ~g~~~~v~~v~~vafSpd-G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg 295 (356)
T 2w18_A 220 HIDDSYQASVCHKAYSEM-GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KD 295 (356)
T ss_dssp ECCC---CCCEEEEEEET-TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ET
T ss_pred cCCCcceeeeEEEEECCC-CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CC
Confidence 222 35778899998 7665 67889999999999999887665 477766555544 46
Q ss_pred CeEEEeeCCCcEeC
Q 048199 482 SMLVSGSDDCKVLY 495 (495)
Q Consensus 482 ~~l~s~s~D~~v~l 495 (495)
.++++|+.|++|||
T Consensus 296 ~~lASgS~DgTIkI 309 (356)
T 2w18_A 296 HCAAAILTSGTIAI 309 (356)
T ss_dssp TEEEEEETTSCEEE
T ss_pred CEEEEEcCCCcEEE
Confidence 89999999999986
No 161
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=1.6e-14 Score=107.97 Aligned_cols=58 Identities=26% Similarity=0.586 Sum_probs=49.9
Q ss_pred cCCCCccccccccchhhhcc---ccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcch
Q 048199 47 SELDKDMLCPICMQIIKEAF---LTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN 104 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv---~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 104 (495)
+...+.+.|+||++.|.+|. .++|||.||+.||.+|+.....||+||+++...++.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 44567789999999998773 56999999999999999988999999999988766554
No 162
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.47 E-value=3e-14 Score=105.20 Aligned_cols=56 Identities=20% Similarity=0.581 Sum_probs=46.3
Q ss_pred ccCCCCccccccccchhh--hccccC--CCCccchhhHHhhhcC-CCCCCCCCCcCccCCC
Q 048199 46 VSELDKDMLCPICMQIIK--EAFLTA--CGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQL 101 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~--~Pv~l~--CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l 101 (495)
...+++++.||||++.+. +++.++ |||+||+.|+.+++.. ...||.||+++....+
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 356788999999999994 556665 9999999999999854 4689999999986544
No 163
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.47 E-value=1.6e-14 Score=100.00 Aligned_cols=48 Identities=23% Similarity=0.444 Sum_probs=42.7
Q ss_pred CCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCC
Q 048199 50 DKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQ 100 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 100 (495)
.+.+.|+||++.|.+|++++|||+||+.||.+| ...||.||+++..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 567899999999999999999999999999883 568999999987643
No 164
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.46 E-value=7.7e-15 Score=118.85 Aligned_cols=72 Identities=28% Similarity=0.526 Sum_probs=59.3
Q ss_pred cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcC-CCCCCCCCCcCccCCCc-chHHHHHHHHHHhH
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTNNQLY-PNFLLDKLLKKTSA 116 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~-~n~~l~~~v~~~~~ 116 (495)
..+.+.+.+.|+||++.|.+|+.++|||+||+.||.+|+.. ...||.||.++...++. ++..+..++..+..
T Consensus 16 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v 89 (116)
T 1rmd_A 16 FPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMV 89 (116)
T ss_dssp CCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEE
T ss_pred hHHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcC
Confidence 33456678999999999999999999999999999999987 57999999999887764 45666666665544
No 165
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.46 E-value=7.4e-15 Score=122.39 Aligned_cols=74 Identities=22% Similarity=0.577 Sum_probs=60.4
Q ss_pred cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCcc---------CCCcchHHHHHHHHHH
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTN---------NQLYPNFLLDKLLKKT 114 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~---------~~l~~n~~l~~~v~~~ 114 (495)
..+.+++.+.|+||+++|.+|+.++|||+||+.||.+|+.... .||.||.++.. .++.++..+.+.+..+
T Consensus 24 ~~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 24 LGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp TGGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred hhccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 3467889999999999999999999999999999999998664 89999997532 3456777777777766
Q ss_pred hHhh
Q 048199 115 SARQ 118 (495)
Q Consensus 115 ~~~~ 118 (495)
...+
T Consensus 104 ~v~C 107 (141)
T 3knv_A 104 PAVC 107 (141)
T ss_dssp EEEC
T ss_pred cccc
Confidence 5533
No 166
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.43 E-value=7.4e-14 Score=96.62 Aligned_cols=49 Identities=29% Similarity=0.737 Sum_probs=43.9
Q ss_pred CCCccccccccchhhh---ccccC-CCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 49 LDKDMLCPICMQIIKE---AFLTA-CGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~---Pv~l~-CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
+++...|+||++.|.+ ++.++ |||.||..||.+|+.....||.||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4667889999999988 67776 9999999999999999999999999874
No 167
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.43 E-value=1.5e-14 Score=101.18 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=50.1
Q ss_pred ccccccccchhhhcccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199 52 DMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF 105 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~ 105 (495)
.+.||||+++++|||++ +|||+||+.||++|+....+||++++++...+|.+|.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 47899999999999999 9999999999999999888999999999999998875
No 168
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.42 E-value=2.9e-14 Score=123.84 Aligned_cols=74 Identities=32% Similarity=0.700 Sum_probs=65.7
Q ss_pred cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCC-CCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKS-DCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ 118 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~ 118 (495)
.++.+++.+.||||+++|.+|+.++|||+||+.||.+|+.... .||.||.++...++.++..+.+.+..+...+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C 85 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKC 85 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEEC
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCC
Confidence 5578899999999999999999999999999999999997654 9999999999888889988888888766543
No 169
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.40 E-value=1.9e-12 Score=128.01 Aligned_cols=136 Identities=14% Similarity=0.120 Sum_probs=106.6
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
.+++++.|..+.+|++. ....+..+. +| ..+.+++|+|+++++ ++++.|++|++||+.++ ..
T Consensus 4 l~vs~~~d~~v~v~d~~---~~~~~~~~~-----~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--------~~ 66 (391)
T 1l0q_A 4 AYIANSESDNISVIDVT---SNKVTATIP-----VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NV 66 (391)
T ss_dssp EEEEETTTTEEEEEETT---TTEEEEEEE-----CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EE
T ss_pred EEEEcCCCCEEEEEECC---CCeEEEEee-----cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC--------eE
Confidence 35677888899999984 234455554 34 348999999999976 67779999999999886 33
Q ss_pred eeecCCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE-EEeeCCCcEeC
Q 048199 419 VVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDDCKVLY 495 (495)
Q Consensus 419 ~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~~v~l 495 (495)
...+.+...+.+++|+|+ +.+| ++++.++.|++||+.+++.+..+..|. .+.+++|+| ++.+| ++++.|+.|++
T Consensus 67 ~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 67 IATVPAGSSPQGVAVSPD-GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSP-DGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp EEEEECSSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred EEEEECCCCccceEECCC-CCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECC-CCCEEEEEeCCCCEEEE
Confidence 444455558999999999 6655 667778999999999999888887554 689999999 88877 78888998864
No 170
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.8e-14 Score=103.49 Aligned_cols=54 Identities=31% Similarity=0.704 Sum_probs=48.5
Q ss_pred ccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCC
Q 048199 46 VSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQ 100 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 100 (495)
++.+.+.+.|+||++.+.+ +.++|||+||+.||.+|+.....||.||.++...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 4566788999999999999 99999999999999999998899999999987543
No 171
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.37 E-value=1.8e-12 Score=130.07 Aligned_cols=145 Identities=11% Similarity=0.076 Sum_probs=112.9
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
++..++++..|..+.+|+... ...+..+..+.+.+|.+.|.+++|+|++.++++++.|++|++||+.++
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-------- 201 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINS---GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-------- 201 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTT---CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--------
T ss_pred CCeEEEEeCCCCeEEEEECCC---CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--------
Confidence 344566777788899999743 233343333344579999999999999999999999999999999876
Q ss_pred CCeeec-CCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEee------
Q 048199 417 CPVVEM-PTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS------ 488 (495)
Q Consensus 417 ~~~~~~-~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s------ 488 (495)
.....+ .+...+.+++|+|+ +..+ ++++.|+.|++||++++..+..+..+ ..+.+++|+| ++.+|++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 202 AYKATVDLTGKWSKILLYDPI-RDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQ 278 (433)
T ss_dssp CEEEEEECSSSSEEEEEEETT-TTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTT
T ss_pred eEEEEEcCCCCCeeEEEEcCC-CCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCcc
Confidence 222222 56778999999999 6655 66768999999999999888888765 4589999999 999998888
Q ss_pred --CCCcEeC
Q 048199 489 --DDCKVLY 495 (495)
Q Consensus 489 --~D~~v~l 495 (495)
.|+.|++
T Consensus 279 ~~~dg~i~~ 287 (433)
T 3bws_A 279 ESGGGRLGI 287 (433)
T ss_dssp CSCCEEEEE
T ss_pred ccCCCeEEE
Confidence 4667653
No 172
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.36 E-value=1.5e-13 Score=99.63 Aligned_cols=49 Identities=31% Similarity=0.786 Sum_probs=43.9
Q ss_pred CCccccccccchhhhc-cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 50 DKDMLCPICMQIIKEA-FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~P-v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
++...|+||++.+.+| +.++|||.||+.||.+|+.....||.||.++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3456899999999997 688999999999999999988999999998863
No 173
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.36 E-value=2e-13 Score=94.45 Aligned_cols=47 Identities=30% Similarity=0.654 Sum_probs=42.2
Q ss_pred Cccccccccchhhh----ccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 51 KDMLCPICMQIIKE----AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 51 ~~l~C~IC~~~~~~----Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
+...|+||++.|.+ ++.++|||.||..||.+|+.....||.||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35679999999976 778999999999999999998899999999864
No 174
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.35 E-value=6.4e-13 Score=102.12 Aligned_cols=51 Identities=27% Similarity=0.642 Sum_probs=45.4
Q ss_pred CCCCccccccccchhhh---ccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 48 ELDKDMLCPICMQIIKE---AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
...++..|+||++.|.+ ++.++|||.||..||.+|+.....||.||.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34567889999999987 7789999999999999999999999999998753
No 175
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.5e-13 Score=100.28 Aligned_cols=53 Identities=30% Similarity=0.639 Sum_probs=46.4
Q ss_pred ccCCCCccccccccchhhhcccc---CCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 46 VSELDKDMLCPICMQIIKEAFLT---ACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l---~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+..+.++..|+||++.|.+|..+ +|||.||+.||.+|+.....||.||+++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 35667788999999999988644 999999999999999988899999998854
No 176
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.4e-13 Score=100.64 Aligned_cols=50 Identities=24% Similarity=0.563 Sum_probs=44.8
Q ss_pred CCCccccccccchhhhc---cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 49 LDKDMLCPICMQIIKEA---FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~P---v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
..+...|+||++.|.++ +.++|||.||..||.+|+.....||.||+++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 35667899999999987 678999999999999999988999999998864
No 177
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=4e-13 Score=97.71 Aligned_cols=51 Identities=27% Similarity=0.627 Sum_probs=44.2
Q ss_pred CCCCccccccccchhh---hccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 48 ELDKDMLCPICMQIIK---EAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~---~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
..++...|+||++.|. .++.++|||.||..||.+|+.....||.||.++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3456678999999985 45789999999999999999988999999998864
No 178
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=3.4e-13 Score=112.25 Aligned_cols=55 Identities=35% Similarity=0.820 Sum_probs=49.8
Q ss_pred CCccccccccchhhhc-------cccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcch
Q 048199 50 DKDMLCPICMQIIKEA-------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN 104 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~P-------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 104 (495)
.+.+.|+||++.|.+| +.++|||+||+.||.+|+.....||.||+.+...++.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc
Confidence 4578999999999999 899999999999999999999999999999987766554
No 179
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.32 E-value=1.8e-11 Score=121.05 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=105.9
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCcCCCe
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADVHCPV 419 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~ 419 (495)
++++..|.++.+|+.. ....+..+. . ...|.+++|+|++++|+ +++.|++|++||+.++ ..+
T Consensus 47 ~~~~~~d~~i~v~d~~---~~~~~~~~~-----~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--------~~~ 109 (391)
T 1l0q_A 47 YVANAHSNDVSIIDTA---TNNVIATVP-----A-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--------TVA 109 (391)
T ss_dssp EEEEGGGTEEEEEETT---TTEEEEEEE-----C-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------EEE
T ss_pred EEECCCCCeEEEEECC---CCeEEEEEE-----C-CCCccceEECCCCCEEEEEECCCCEEEEEECCCC--------eEE
Confidence 3677788999999984 234445554 2 23899999999999775 5556799999999986 334
Q ss_pred eecCCCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE-EEeeCCCcEeC
Q 048199 420 VEMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDDCKVLY 495 (495)
Q Consensus 420 ~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~~v~l 495 (495)
..+.+...+.+++|+|+ +..| ++++.|+.|++||+.+++.+..+..|. .+.+++|+| ++.+| ++++.|+.|++
T Consensus 110 ~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~-dg~~l~~~~~~~~~v~~ 184 (391)
T 1l0q_A 110 GTVKTGKSPLGLALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTP-DGTKVYVANFDSMSISV 184 (391)
T ss_dssp EEEECSSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred EEEeCCCCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECC-CCCEEEEEeCCCCEEEE
Confidence 44456667999999999 6655 789999999999999999888887664 568999999 88777 67788888864
No 180
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.30 E-value=4.6e-13 Score=98.42 Aligned_cols=48 Identities=31% Similarity=0.693 Sum_probs=43.1
Q ss_pred cCCCCccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+.+++++.|+||++.+.+|+.+||||+ ||+.|+.+| ..||.||+++..
T Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 19 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred hcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 445677899999999999999999999 999999998 679999998864
No 181
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.30 E-value=1.8e-11 Score=122.73 Aligned_cols=141 Identities=11% Similarity=0.050 Sum_probs=111.0
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~ 414 (495)
.++..++++..|..+.+|++.. ...+..+. .|...+.+++|+|++++++ +++.|+.|++||+.++
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~------ 244 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKT---LAYKATVD-----LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK------ 244 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTT---CCEEEEEE-----CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT------
T ss_pred CCCEEEEEECCCCEEEEEECCC---ceEEEEEc-----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC------
Confidence 3456678888999999999842 33445554 6788999999999999775 5558999999999876
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEec--------CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCC-eEE
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSD--------YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPS-MLV 485 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~--------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~-~l~ 485 (495)
..+..+.....+.+++|+|+ +.+|++++ .||.|++||+.++..+..+ .|...+.+++|+| ++. +++
T Consensus 245 --~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~-~g~~l~~ 319 (433)
T 3bws_A 245 --LEIRKTDKIGLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGN-TENKIYV 319 (433)
T ss_dssp --EEEEECCCCSEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECS-STTEEEE
T ss_pred --cEEEEecCCCCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECC-CCCEEEE
Confidence 33444555667999999999 88888887 4889999999988777665 4666899999999 876 557
Q ss_pred EeeCCCcEeC
Q 048199 486 SGSDDCKVLY 495 (495)
Q Consensus 486 s~s~D~~v~l 495 (495)
+++.|+.|++
T Consensus 320 ~~~~~~~v~v 329 (433)
T 3bws_A 320 SDMCCSKIEV 329 (433)
T ss_dssp EETTTTEEEE
T ss_pred EecCCCEEEE
Confidence 7788998864
No 182
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=7.5e-13 Score=97.67 Aligned_cols=48 Identities=31% Similarity=0.693 Sum_probs=42.0
Q ss_pred cCCCCccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+.+++.+.|+||++.+.+|+.+||||. ||..|+.+. ..||.||.++..
T Consensus 20 ~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 20 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred HcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 444667899999999999999999999 999999764 679999998864
No 183
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.28 E-value=2.5e-11 Score=121.52 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=98.4
Q ss_pred HHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC---cEEEEEccccccCCCCcCCCeeecCC
Q 048199 348 FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR---RIKVFDFASVVNEPADVHCPVVEMPT 424 (495)
Q Consensus 348 ~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~ 424 (495)
.++.+|++.. . ....+. +|...|.+++|+|+|++|++++.|+ .|++||+.++ .......+
T Consensus 159 ~~i~i~d~~g-~---~~~~l~-----~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--------~~~~l~~~ 221 (415)
T 2hqs_A 159 YELRVSDYDG-Y---NQFVVH-----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--------AVRQVASF 221 (415)
T ss_dssp EEEEEEETTS-C---SCEEEE-----EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--------CEEEEECC
T ss_pred ceEEEEcCCC-C---CCEEEe-----CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--------cEEEeecC
Confidence 5888998742 1 123333 6788999999999999999999885 9999999986 23334456
Q ss_pred CCCeEEEEEcCCCCCEEE-EecCCCc--EEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC-CC
Q 048199 425 RSKLSCLSWNKFSKNRIA-SSDYEGI--VTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD-DC 491 (495)
Q Consensus 425 ~~~i~~~~~~p~~~~~l~-sg~~dg~--v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~-D~ 491 (495)
...+.+++|+|| +..|+ +++.++. |.+||+.++.. ..+..|...+.+++|+| ||.+|++++. ++
T Consensus 222 ~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g 289 (415)
T 2hqs_A 222 PRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAG 289 (415)
T ss_dssp SSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECT-TSSEEEEEECTTS
T ss_pred CCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECC-CCCEEEEEECCCC
Confidence 778999999999 77666 7776665 99999988765 66778889999999999 9999988886 44
No 184
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.22 E-value=4.5e-12 Score=102.15 Aligned_cols=48 Identities=29% Similarity=0.708 Sum_probs=41.3
Q ss_pred Cccccccccchhhhcc------------------ccCCCCccchhhHHhhh-----cCCCCCCCCCCcCcc
Q 048199 51 KDMLCPICMQIIKEAF------------------LTACGHSFCYMCIITHL-----RNKSDCPCCGHYLTN 98 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv------------------~l~CGH~FC~~Ci~~~~-----~~~~~CP~Cr~~~~~ 98 (495)
.+..|+||++.|.+|. .++|||.||..||.+|+ .....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3458999999998875 67999999999999999 445799999998864
No 185
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=4e-12 Score=95.18 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=41.6
Q ss_pred Cccccccccchhhh--------------cccc-CCCCccchhhHHhhhcCCCCCCCCCCcCccC
Q 048199 51 KDMLCPICMQIIKE--------------AFLT-ACGHSFCYMCIITHLRNKSDCPCCGHYLTNN 99 (495)
Q Consensus 51 ~~l~C~IC~~~~~~--------------Pv~l-~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 99 (495)
++..|+||++.|.+ ++.+ +|||.||..||.+|+....+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45679999999977 3444 5999999999999999999999999998653
No 186
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.19 E-value=3.2e-12 Score=106.31 Aligned_cols=56 Identities=34% Similarity=0.835 Sum_probs=50.9
Q ss_pred CCccccccccchhhhc-------cccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199 50 DKDMLCPICMQIIKEA-------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF 105 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~P-------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~ 105 (495)
++.+.|+||++.|.+| +.++|||+||..||.+|+.....||.||.++..+++.++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 5678899999999998 8889999999999999999999999999999988877654
No 187
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.19 E-value=1.4e-10 Score=120.08 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=109.9
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEc--cccccCCC
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDF--ASVVNEPA 413 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~--~~~~~~~~ 413 (495)
.++..++++..|.++.+||.. ....+..+.. +|. +..++|+|+|++|++++.|++|++||+ .++
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~---t~~~~~~i~~----g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~----- 212 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGD---SKKIVKVIDT----GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP----- 212 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETT---TCCEEEEEEC----STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC-----
T ss_pred CCCEEEEEEcCCCeEEEEECC---CceEEEEEec----Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC-----
Confidence 345667788889999999974 3344566653 333 889999999999999999999999999 554
Q ss_pred CcCCCeeecCCCCCeEEEEEcC----CCCCEEEEecC-CCcEEEEeCCCCcceeeccc----------ccC-cEEEEEee
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNK----FSKNRIASSDY-EGIVTVWDVTTQQSVMEYEE----------HEK-RAWSVDFS 477 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p----~~~~~l~sg~~-dg~v~iwd~~~~~~~~~~~~----------h~~-~v~~v~~~ 477 (495)
..+..+.+...+..++|+| + +.++++++. +++|.|||..+++++..+.. |.. .+.++.|+
T Consensus 213 ---~~~~~i~~g~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 213 ---TKVAEIKIGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp ---EEEEEEECCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred ---cEEEEEecCCCcceEEeCCCcCCC-CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 2344445566789999999 8 888888884 89999999999998888764 323 78999999
Q ss_pred cCCCCeEEEeeCCCcEe
Q 048199 478 RTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 478 ~~~g~~l~s~s~D~~v~ 494 (495)
|.++.++++...++.|.
T Consensus 289 ~~~~~~~vs~~~~g~i~ 305 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVL 305 (543)
T ss_dssp SSSSEEEEEETTTTEEE
T ss_pred CCCCEEEEEECCCCeEE
Confidence 94455677777888875
No 188
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.16 E-value=1.6e-11 Score=117.53 Aligned_cols=52 Identities=25% Similarity=0.620 Sum_probs=46.1
Q ss_pred CCCccccccccchhhhccccCCCCccchhhHHhhhc-CCCCCCCCCCcCccCC
Q 048199 49 LDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLR-NKSDCPCCGHYLTNNQ 100 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 100 (495)
.+....|+||++.+.+|+.++|||+||..||..|+. ....||.||.++....
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred cCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 345578999999999999999999999999999998 6789999999987643
No 189
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.14 E-value=8.7e-12 Score=88.52 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=43.0
Q ss_pred Cccccccccchhhhcccc--CCCCc-cchhhHHhhhcCCCCCCCCCCcCc
Q 048199 51 KDMLCPICMQIIKEAFLT--ACGHS-FCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l--~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
++..|+||++.+.+++.+ ||||. ||..|+.+|+.....||.||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456799999999999977 99999 899999999988889999999875
No 190
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.12 E-value=5.9e-10 Score=111.45 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=96.2
Q ss_pred cccCcccchhhH---HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEE-EEeCCCc--EEEEEcccccc
Q 048199 337 HREGYNAGLADF---QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFA-TAGVSRR--IKVFDFASVVN 410 (495)
Q Consensus 337 ~~~~~~~g~~d~---~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~d~~--i~vwd~~~~~~ 410 (495)
++..++.++.+. .+.+|++.. .+ ...+. +|.+.+.+++|+|+|+.|+ +++.|+. |.+||+.++
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~t-g~---~~~l~-----~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-- 257 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLAN-GA---VRQVA-----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-- 257 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTT-CC---EEEEE-----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--
T ss_pred CCCEEEEEEecCCCcEEEEEECCC-Cc---EEEee-----cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC--
Confidence 444455555553 677887742 11 11222 5678899999999999777 6666655 999999876
Q ss_pred CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC-CC--cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199 411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY-EG--IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~-dg--~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
.......+...+.+++|+|| +..|++++. ++ .|.+||+.++.. ..+..|...+.+++|+| +|.+|+++
T Consensus 258 ------~~~~l~~~~~~~~~~~~spd-g~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-dG~~l~~~ 328 (415)
T 2hqs_A 258 ------QIRQVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSS-DGKFMVMV 328 (415)
T ss_dssp ------CEEECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECT-TSSEEEEE
T ss_pred ------CEEeCcCCCCcccceEECCC-CCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECC-CCCEEEEE
Confidence 22333456678999999999 887777765 45 577779887753 45566778899999999 99999888
Q ss_pred eCC
Q 048199 488 SDD 490 (495)
Q Consensus 488 s~D 490 (495)
+.+
T Consensus 329 ~~~ 331 (415)
T 2hqs_A 329 SSN 331 (415)
T ss_dssp EEC
T ss_pred ECc
Confidence 764
No 191
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.11 E-value=1.5e-11 Score=86.97 Aligned_cols=46 Identities=20% Similarity=0.556 Sum_probs=42.1
Q ss_pred ccccccccchhhhcccc--CCCCc-cchhhHHhhhcCCCCCCCCCCcCc
Q 048199 52 DMLCPICMQIIKEAFLT--ACGHS-FCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l--~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
...|+||++.+.+++++ ||||. ||..|+.+++.....||.||+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45799999999999887 99999 999999999988889999999875
No 192
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.09 E-value=8.7e-12 Score=92.51 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=42.4
Q ss_pred cCCCCccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+.+++...|+||++.+.+|+.+||||. ||..|+.++. .||.||.++..
T Consensus 13 ~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~ 61 (79)
T 2yho_A 13 RKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCE
T ss_pred HcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhC
Confidence 344567889999999999999999999 9999999874 79999998864
No 193
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.07 E-value=5e-11 Score=93.40 Aligned_cols=48 Identities=25% Similarity=0.492 Sum_probs=41.9
Q ss_pred Cccccccccchhhhc------------------cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 51 KDMLCPICMQIIKEA------------------FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 51 ~~l~C~IC~~~~~~P------------------v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
++..|+||++.|.++ +.++|||.||..||.+|+.....||.||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 356799999999976 247999999999999999999999999998753
No 194
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=2.5e-11 Score=93.87 Aligned_cols=45 Identities=22% Similarity=0.565 Sum_probs=39.0
Q ss_pred Cccccccccchhhhcccc---CCCCccchhhHHhhhcC--------CCCCCC--CCCc
Q 048199 51 KDMLCPICMQIIKEAFLT---ACGHSFCYMCIITHLRN--------KSDCPC--CGHY 95 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l---~CGH~FC~~Ci~~~~~~--------~~~CP~--Cr~~ 95 (495)
+.+.|+||++.+.+|+++ +|||.||+.|+.+|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999999999754 79999999999999874 238999 9998
No 195
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.02 E-value=4.5e-10 Score=108.30 Aligned_cols=140 Identities=14% Similarity=0.067 Sum_probs=97.3
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC-CcEEEEEcc--ccccCCCCcCC
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS-RRIKVFDFA--SVVNEPADVHC 417 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d-~~i~vwd~~--~~~~~~~~~~~ 417 (495)
+.++..|+.+.+|++........+..+ .|...+.+++|+|++++|++++.+ +.|++|++. ++. ..
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~------~~ 75 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVV------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA------LT 75 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC------EE
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeE------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc------ee
Confidence 445567889999988432222333333 356678899999999988888876 999999998 330 01
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEe-cCCCcEEEEeC---CCCcceeecccccCcEEEEEeecCCCCeEEEee-CCCc
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASS-DYEGIVTVWDV---TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS-DDCK 492 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg-~~dg~v~iwd~---~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s-~D~~ 492 (495)
.+..+.....+..++|+|+ +.+|+++ ..++.|.+||+ .++..+..+..+. .+.+++|+| ++.+|++++ .|+.
T Consensus 76 ~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 76 FAAESALPGSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISP-DNRTLWVPALKQDR 152 (343)
T ss_dssp EEEEEECSSCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECT-TSSEEEEEEGGGTE
T ss_pred eccccccCCCCcEEEEcCC-CCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECC-CCCEEEEecCCCCE
Confidence 2222333347889999999 7766555 45889999999 4444555555443 588899999 998887777 7787
Q ss_pred EeC
Q 048199 493 VLY 495 (495)
Q Consensus 493 v~l 495 (495)
|++
T Consensus 153 v~~ 155 (343)
T 1ri6_A 153 ICL 155 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 753
No 196
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.8e-10 Score=82.54 Aligned_cols=45 Identities=22% Similarity=0.672 Sum_probs=39.8
Q ss_pred CCccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 50 DKDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
.+...|+||++.+.+++.+||||. ||..|+.+. ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhc
Confidence 346789999999999999999999 999999963 579999998864
No 197
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.00 E-value=5.9e-10 Score=104.68 Aligned_cols=134 Identities=9% Similarity=-0.001 Sum_probs=95.9
Q ss_pred cchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeee
Q 048199 343 AGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVE 421 (495)
Q Consensus 343 ~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~ 421 (495)
.+..+..+.||++.... .....+. .|...+.++.|+|++++|+.++ .++.++||++.... ......
T Consensus 146 ~~~~~~~~~l~~~~~~~--~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~------~~~~~~ 212 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDS--GVETRLT-----HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG------SSVERI 212 (297)
T ss_dssp EEEETTEEEEEEEETTT--CCEEECC-----CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS------SCEEEC
T ss_pred EECCCCceEEEEEECCC--CcceEcc-----cCCCccccceECCCCCEEEEEecCCCCccEEEECCCC------CCcEEE
Confidence 55566667788753211 1122222 5678899999999999877665 59999999987430 112222
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEecCC-----------CcEEEEeCCCCcc--eeecccccCcEEEEEeecCCCCeEEEee
Q 048199 422 MPTRSKLSCLSWNKFSKNRIASSDYE-----------GIVTVWDVTTQQS--VMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 422 ~~~~~~i~~~~~~p~~~~~l~sg~~d-----------g~v~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
..+...+..+.|+|+ +.+|++++.+ +.|.+||+.++.. +..+.+|...+..++|+| ++.+|++++
T Consensus 213 ~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~ 290 (297)
T 2ojh_A 213 TDSAYGDWFPHPSPS-GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVR 290 (297)
T ss_dssp CCCSEEEEEEEECTT-SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEE
T ss_pred ecCCcccCCeEECCC-CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEE
Confidence 245567889999999 8888877765 5699999988765 444557888999999999 999988887
Q ss_pred CCC
Q 048199 489 DDC 491 (495)
Q Consensus 489 ~D~ 491 (495)
.|.
T Consensus 291 ~~~ 293 (297)
T 2ojh_A 291 YFP 293 (297)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 198
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.97 E-value=2e-09 Score=101.04 Aligned_cols=130 Identities=9% Similarity=0.002 Sum_probs=90.9
Q ss_pred chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccc-cccCCCCcCCCeeec
Q 048199 344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-VVNEPADVHCPVVEM 422 (495)
Q Consensus 344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~ 422 (495)
+..|.++.+|++.. .. ...+. .|...|.+++|+|++++|++++ ++.|.+||+.+ + ......
T Consensus 18 ~~~~~~i~~~d~~~---~~-~~~~~-----~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--------~~~~~~ 79 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT---RK-MRVVW-----QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--------SPEKVD 79 (297)
T ss_dssp CCCCEEEEEEETTT---TE-EEEEE-----EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC--------SCEECC
T ss_pred CCcceeEEEEeCCC---Cc-eeeec-----cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC--------CceEec
Confidence 44567888998742 12 12222 5678899999999999999987 88999999988 5 122222
Q ss_pred -CC-CCCeEEEEEcCCCCCEEEEec--CCCcEEEEeC--CCCcceeecccccCcEEEEEeecCCCCeEE-EeeCCCcEeC
Q 048199 423 -PT-RSKLSCLSWNKFSKNRIASSD--YEGIVTVWDV--TTQQSVMEYEEHEKRAWSVDFSRTEPSMLV-SGSDDCKVLY 495 (495)
Q Consensus 423 -~~-~~~i~~~~~~p~~~~~l~sg~--~dg~v~iwd~--~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~-s~s~D~~v~l 495 (495)
.+ ...+.+++|+|+ +.+|++++ .++.+.||++ .++. ...+..+. .+..++|+| ++.+|+ +++.|+.++|
T Consensus 80 ~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp-dg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 80 TGFATICNNDHGISPD-GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP-DGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp CTTCCCBCSCCEECTT-SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT-TSSEEEEEEEETTEEEE
T ss_pred cccccccccceEECCC-CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC-CCCEEEEEECCCCceEE
Confidence 22 356889999999 88888888 3355555554 4443 44454443 488999999 888776 7777886653
No 199
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.96 E-value=7.4e-10 Score=115.80 Aligned_cols=105 Identities=13% Similarity=-0.015 Sum_probs=89.7
Q ss_pred EEEEEccCCCEEEEEeCC----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC--cEEEE
Q 048199 380 SSIEFDRDDQLFATAGVS----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG--IVTVW 453 (495)
Q Consensus 380 ~~l~~~p~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg--~v~iw 453 (495)
.++.|+|||+++++++.| ..|++||+.++ .......+.+.+..++|+|| |..|++++.++ .|.+|
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g--------~~~~l~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG--------GLRVFDSGEGSFSSASISPG-MKVTAGLETAREARLVTV 223 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC--------CCEEECCSSCEEEEEEECTT-SCEEEEEECSSCEEEEEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC--------CceEeecCCCccccceECCC-CCEEEEccCCCeeEEEEE
Confidence 789999999999988877 78999999886 23344456677899999999 88999888888 89999
Q ss_pred eCCCCcceeecccccCcEEEEE--------eecCCCCeEEEeeCCCcEeC
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVD--------FSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~--------~~~~~g~~l~s~s~D~~v~l 495 (495)
|+.++... .+.+|...+..++ |+| ||.++++++.|++++|
T Consensus 224 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l 271 (582)
T 3o4h_A 224 DPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAV 271 (582)
T ss_dssp CTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEE
T ss_pred cCCCCcEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEE
Confidence 99988877 7788888887777 999 8899999999998764
No 200
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.95 E-value=1.2e-10 Score=111.15 Aligned_cols=48 Identities=25% Similarity=0.694 Sum_probs=43.4
Q ss_pred cCCCCccccccccchhhhccccCCCCc-cchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 47 SELDKDMLCPICMQIIKEAFLTACGHS-FCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l~CGH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+.+++++.|+||++.+.+|+.+||||+ ||..|+.+| ..||.||.++..
T Consensus 290 ~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred HhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 556778999999999999999999999 999999998 579999998853
No 201
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.92 E-value=4.5e-09 Score=101.18 Aligned_cols=146 Identities=10% Similarity=0.050 Sum_probs=95.1
Q ss_pred cccCcccchh-hHHhhhhhhhc-ccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCC
Q 048199 337 HREGYNAGLA-DFQSVLTTFTR-YSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPA 413 (495)
Q Consensus 337 ~~~~~~~g~~-d~~~~lw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~ 413 (495)
++..+..+.. +..+.+|++.. ......+..+. .+ ..+..++|+|++++|++++. ++.|.+||+..+.
T Consensus 48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~---- 117 (343)
T 1ri6_A 48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-----LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL---- 117 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-----CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE----
T ss_pred CCCEEEEeecCCCeEEEEEecCCCCceeeccccc-----cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc----
Confidence 3343444443 37889998741 12333444443 22 36889999999997766654 8899999995220
Q ss_pred CcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEEEeCCC-Cccee----eccc-ccCcEEEEEeecCCCCeEEE
Q 048199 414 DVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTVWDVTT-QQSVM----EYEE-HEKRAWSVDFSRTEPSMLVS 486 (495)
Q Consensus 414 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd~~~-~~~~~----~~~~-h~~~v~~v~~~~~~g~~l~s 486 (495)
.............+.+++|+|+ +.+|++++ .++.|.+||+.+ +.... .+.. ....+..++|+| ++.+|+.
T Consensus 118 -~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~ 194 (343)
T 1ri6_A 118 -PVGVVDVVEGLDGCHSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYC 194 (343)
T ss_dssp -EEEEEEEECCCTTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEE
T ss_pred -cccccccccCCCCceEEEECCC-CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEE
Confidence 0122333444556889999999 77666666 899999999987 54322 2222 234788999999 8886654
Q ss_pred e-eCCCcEeC
Q 048199 487 G-SDDCKVLY 495 (495)
Q Consensus 487 ~-s~D~~v~l 495 (495)
+ ..++.|++
T Consensus 195 ~~~~~~~i~~ 204 (343)
T 1ri6_A 195 VNELNSSVDV 204 (343)
T ss_dssp EETTTTEEEE
T ss_pred EeCCCCEEEE
Confidence 4 47777753
No 202
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.91 E-value=1e-08 Score=98.53 Aligned_cols=137 Identities=7% Similarity=-0.013 Sum_probs=94.5
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEccccccCCCCcCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGV-SRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~~ 417 (495)
..++++..+..+.+|+... ...+..+. .+...+ .++|+|+++++++++. ++.|.+||+.++ ..
T Consensus 11 ~~~v~~~~~~~v~~~d~~~---~~~~~~~~-----~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-------~~ 74 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDT---LEILNQIT-----LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-------PP 74 (331)
T ss_dssp EEEEEEGGGTEEEEEETTT---CCEEEEEE-----CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-------SC
T ss_pred EEEEEecCCCeEEEEeCcc---cceeeeEE-----ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-------ce
Confidence 3356777788999999742 22233333 234556 9999999996665554 899999999886 11
Q ss_pred CeeecCCCCCeEE-EEEcCCCCCEEEEecCCC---cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEE-EeeCCCc
Q 048199 418 PVVEMPTRSKLSC-LSWNKFSKNRIASSDYEG---IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLV-SGSDDCK 492 (495)
Q Consensus 418 ~~~~~~~~~~i~~-~~~~p~~~~~l~sg~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~-s~s~D~~ 492 (495)
............. ++|+|+ +.+|+++..++ .|.+||+.+++.+..+..+ ....+++|+| +|.+|+ ++..++.
T Consensus 75 ~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~ 151 (331)
T 3u4y_A 75 KVVAIQEGQSSMADVDITPD-DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDRSSAN 151 (331)
T ss_dssp EEEEEEECSSCCCCEEECTT-SSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTT
T ss_pred eEEecccCCCCccceEECCC-CCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEecCCCc
Confidence 1333333333444 999999 88888666553 8999999999888877654 4568999999 887554 4455566
Q ss_pred -Ee
Q 048199 493 -VL 494 (495)
Q Consensus 493 -v~ 494 (495)
|.
T Consensus 152 ~i~ 154 (331)
T 3u4y_A 152 TVR 154 (331)
T ss_dssp EEE
T ss_pred eEE
Confidence 54
No 203
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.91 E-value=1.5e-10 Score=91.87 Aligned_cols=47 Identities=26% Similarity=0.526 Sum_probs=0.4
Q ss_pred ccccccccchhhhcc------------------ccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 52 DMLCPICMQIIKEAF------------------LTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv------------------~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+-.|+||++.|.+|. .++|||.||..||.+|+.....||.||+++..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 357999999998752 25899999999999999999999999998653
No 204
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.90 E-value=2.3e-09 Score=114.97 Aligned_cols=139 Identities=8% Similarity=-0.094 Sum_probs=96.9
Q ss_pred cccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCC---cEEEEEEccCCCEEEEEeCC---------CcEEE
Q 048199 335 IIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSAN---IVSSIEFDRDDQLFATAGVS---------RRIKV 402 (495)
Q Consensus 335 ~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~p~~~~l~s~s~d---------~~i~v 402 (495)
..++..+.+ +.|+++.+|+.... +. ...+. +|.. .|.+++|+|||++|++++.+ +.|.+
T Consensus 25 spdg~~~~~-~~dg~i~~~d~~~g-~~--~~~~~-----~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 25 ISDTEFIYR-EQKGTVRLWNVETN-TS--TVLIE-----GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp SSSSCBCCC-CSSSCEEEBCGGGC-CC--EEEEC-----TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cCCCcEEEE-eCCCCEEEEECCCC-cE--EEEec-----cccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 344444443 56779999998532 21 22222 3443 49999999999999999875 67889
Q ss_pred EEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcE----------
Q 048199 403 FDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRA---------- 471 (495)
Q Consensus 403 wd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v---------- 471 (495)
||+.++.. ..+.. ..+...+..++|+|| |..|+.++. +.|.+||+.++........+...+
T Consensus 96 ~d~~~~~~------~~l~~~~~~~~~~~~~~~SPd-G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 96 SKIPHGDP------QSLDPPEVSNAKLQYAGWGPK-GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp EESSSCCC------EECCCTTCCSCCCSBCCBCSS-TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred EECCCCce------EeccCCccccccccccEECCC-CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence 99988611 00111 123345888999999 888888875 799999999887766555443333
Q ss_pred --------EEEEeecCCCCeEEEeeCCC
Q 048199 472 --------WSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 472 --------~~v~~~~~~g~~l~s~s~D~ 491 (495)
.+++|+| ||.+|++++.|+
T Consensus 168 ~ee~~~~~~~~~~Sp-Dg~~la~~~~~~ 194 (723)
T 1xfd_A 168 EEEILKTHIAHWWSP-DGTRLAYAAIND 194 (723)
T ss_dssp HHTTSSSSEEEEECT-TSSEEEEEEEEC
T ss_pred EEEeccCcceEEECC-CCCEEEEEEECC
Confidence 7899999 999999988653
No 205
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.88 E-value=8.2e-09 Score=100.10 Aligned_cols=151 Identities=11% Similarity=0.075 Sum_probs=96.8
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEccccccCCCCc
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFA-TAGVSRRIKVFDFASVVNEPADV 415 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~~~~~~~~~~ 415 (495)
++..+.++..+..+.+|++........+..+.. .....+..++|+|+|++++ ++..++.|.+|+++.....+..
T Consensus 151 dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~----~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~- 225 (347)
T 3hfq_A 151 DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM----EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ- 225 (347)
T ss_dssp TSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE-
T ss_pred CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc----CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE-
Confidence 444455566667888898752233232322221 1234678899999999555 4567899999999852000000
Q ss_pred CCCeeecC----CCCCeEEEEEcCCCCCEE-EEecCCCcEEEEeCCC---CcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199 416 HCPVVEMP----TRSKLSCLSWNKFSKNRI-ASSDYEGIVTVWDVTT---QQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 416 ~~~~~~~~----~~~~i~~~~~~p~~~~~l-~sg~~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
........ ....+..++|+|+ +.+| +++..++.|.+||+.. ...+..+..+...+..++|+| +|.+|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spd-G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~ 303 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHD-GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVV 303 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTT-SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEE
T ss_pred eeeeeecCCCCCCCCcceeEEECCC-CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEE
Confidence 00000011 1245889999999 7765 5666789999999973 245566666667789999999 99988887
Q ss_pred eCC-CcEe
Q 048199 488 SDD-CKVL 494 (495)
Q Consensus 488 s~D-~~v~ 494 (495)
+.+ +.|.
T Consensus 304 ~~~~~~v~ 311 (347)
T 3hfq_A 304 NQNTDNAT 311 (347)
T ss_dssp ETTTTEEE
T ss_pred EcCCCcEE
Confidence 754 6665
No 206
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.86 E-value=5e-09 Score=112.67 Aligned_cols=105 Identities=7% Similarity=-0.059 Sum_probs=80.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC
Q 048199 378 IVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT 457 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~ 457 (495)
.|.+++|+|||++|++++. +.|.+||+.++... .......+...+..++|+|| +.+|+.++ ++.|.+||+.+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~SPD-G~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-----AVRQLTHGEGFATDAKLSPK-GGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-----SCCBCCCSSSCEEEEEECTT-SSEEEEEE-TTEEEEEETTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-----eEEEcccCCcccccccCCCC-CCEEEEEe-CCcEEEEecCC
Confidence 4789999999999999886 99999999875100 11222345567999999999 88888887 56999999998
Q ss_pred CcceeecccccCc----------------EEEEEeecCCCCeEEEeeCCC
Q 048199 458 QQSVMEYEEHEKR----------------AWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 458 ~~~~~~~~~h~~~----------------v~~v~~~~~~g~~l~s~s~D~ 491 (495)
+........+... +.+++|+| ||.+|++++.|+
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~ 230 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDE 230 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEEC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcC
Confidence 8766555444332 47899999 999999988765
No 207
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.84 E-value=1.4e-08 Score=113.69 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=91.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCC----
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEG---- 448 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg---- 448 (495)
+|...+..++|+|+|++|++++.++.|++||+.++ ...... .|...+.+++|+|| +.+|++++.++
T Consensus 376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg--------~~~~~~~~~~~~v~~~~~SpD-G~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--------KPTVIERSREAMITDFTISDN-SRFIAYGFPLKHGET 446 (1045)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEEEEECSSSCCCCEEECTT-SCEEEEEEEECSSTT
T ss_pred CCccceeeeEECCCCCEEEEECCCCeEEEEECCCC--------ceEEeccCCCCCccceEECCC-CCeEEEEecCccccc
Confidence 57788999999999999999999999999999886 222222 57778899999999 88888877654
Q ss_pred ------cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 449 ------IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 449 ------~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.|++||+.++. +..+..|...+..++|+| +|.+|++++.++.
T Consensus 447 ~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~ 494 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSL 494 (1045)
T ss_dssp CSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCC
T ss_pred cCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccC
Confidence 89999999877 777888988999999999 9999999887654
No 208
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.83 E-value=3.2e-08 Score=95.73 Aligned_cols=141 Identities=11% Similarity=0.039 Sum_probs=98.5
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccc----cCCCcEEEEEEccCCCEEEEEe--CCCcEEEEEccccccCCCC
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIF----HSANIVSSIEFDRDDQLFATAG--VSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~~p~~~~l~s~s--~d~~i~vwd~~~~~~~~~~ 414 (495)
+..+..+..+.+|+... ...+..+..+.-. .....+.++.|+|++++++.++ .++.|.+||..++
T Consensus 104 ~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~------ 174 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKT---GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI------ 174 (353)
T ss_dssp EEEETTTTEEEEEETTT---CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT------
T ss_pred EEEecCCCEEEEEeCCC---CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC------
Confidence 44555566888888742 2334444421100 0011278999999999777665 4889999999876
Q ss_pred cCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc----ccCcEEEEEeecCCCCeEEEeeC
Q 048199 415 VHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE----HEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 415 ~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~----h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.....+. +...+.+++|+|+ +.+|++++.++.|.+||..+++.+..+.. +...+.+++|+| ++.+|+.++.
T Consensus 175 --~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~ 250 (353)
T 3vgz_A 175 --KLKTAIQNTGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDS 250 (353)
T ss_dssp --EEEEEECCCCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEES
T ss_pred --ceEEEecCCCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeC
Confidence 2333333 4445788999999 88899999999999999999988777654 566788999999 8887666654
Q ss_pred -CCcEe
Q 048199 490 -DCKVL 494 (495)
Q Consensus 490 -D~~v~ 494 (495)
++.|.
T Consensus 251 ~~~~v~ 256 (353)
T 3vgz_A 251 KAAEVL 256 (353)
T ss_dssp SSSEEE
T ss_pred CCCEEE
Confidence 46664
No 209
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.81 E-value=1.1e-08 Score=98.17 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=94.6
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCC-cEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSAN-IVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
++++..+.++.+|+... ...+..+.. ++.. .+..++|+|+++.+ ++++.++.|.+||+.++ ..
T Consensus 4 ~v~~~~~~~v~~~d~~~---~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--------~~ 68 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEK---MAVDKVITI----ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--------ET 68 (337)
T ss_dssp EEEEETTTEEEEEETTT---TEEEEEEEC----TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--------CE
T ss_pred EEEcCCCCeEEEEECCC---CcEEEEEEc----CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC--------Ce
Confidence 45566777899998742 344444442 2222 47889999999755 56667899999999876 22
Q ss_pred eeecCCC------CCeEEEEEcCCCCCEEEEec------------CCCcEEEEeCCCCcceeecccccCcEEEEEeecCC
Q 048199 419 VVEMPTR------SKLSCLSWNKFSKNRIASSD------------YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE 480 (495)
Q Consensus 419 ~~~~~~~------~~i~~~~~~p~~~~~l~sg~------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 480 (495)
+..+... ..+..++|+|+ +.+|++++ .++.|.+||+.+++.+..+.. ...+..++|+| +
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-d 145 (337)
T 1pby_B 69 LGRIDLSTPEERVKSLFGAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-D 145 (337)
T ss_dssp EEEEECCBTTEEEECTTCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-T
T ss_pred EeeEEcCCcccccccccceEECCC-CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-C
Confidence 2222111 15678999999 87888775 579999999998888777764 45678899999 9
Q ss_pred CCeEEEeeCCCcEe
Q 048199 481 PSMLVSGSDDCKVL 494 (495)
Q Consensus 481 g~~l~s~s~D~~v~ 494 (495)
|.+|+++ ++.|+
T Consensus 146 g~~l~~~--~~~i~ 157 (337)
T 1pby_B 146 GSKLYGL--GRDLH 157 (337)
T ss_dssp SSCEEEE--SSSEE
T ss_pred CCEEEEe--CCeEE
Confidence 9888877 45554
No 210
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.79 E-value=2e-08 Score=107.97 Aligned_cols=107 Identities=10% Similarity=0.061 Sum_probs=84.7
Q ss_pred CCcEEEEEEccCCCEEEEEeC-CC-----cEEEEEccccccCCCCcCCCeeecC-C--C---------------------
Q 048199 376 ANIVSSIEFDRDDQLFATAGV-SR-----RIKVFDFASVVNEPADVHCPVVEMP-T--R--------------------- 425 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~-d~-----~i~vwd~~~~~~~~~~~~~~~~~~~-~--~--------------------- 425 (495)
...|.+++|+|||++|++++. |+ +|++||+.++. ...... + .
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ--------TRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC--------EEEEECGGGTC--------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc--------eeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 356899999999999999998 88 89999998861 111111 1 1
Q ss_pred -CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc--ceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 426 -SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 426 -~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
..+.+++|+|| +.+|++++. +.|.+||+.++. .+..+..|...+..++|+| ||.+|++++. +.|+
T Consensus 108 ~~~v~~~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~~-~~i~ 175 (741)
T 2ecf_A 108 MTGIVDYQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIRG-RNLW 175 (741)
T ss_dssp CEESCCCEECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEET-TEEE
T ss_pred ccCcceeEECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEeC-CcEE
Confidence 23788999999 888888876 999999999873 5566778888999999999 9999999885 3554
No 211
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.78 E-value=3.7e-08 Score=96.00 Aligned_cols=145 Identities=8% Similarity=0.051 Sum_probs=92.8
Q ss_pred cccchhhHHhhhhhhhcccC------ceEE---EEeeccccccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEcccccc
Q 048199 341 YNAGLADFQSVLTTFTRYSR------LRVI---AELRHGDIFHSANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVN 410 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~------~~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~ 410 (495)
+..+..+..+.+|++..... +... ..... .+...+..++|+|+|+++++++ .++.|.+||+.++..
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV----APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceec----CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 34555566788887753221 2111 11111 3345678999999999777666 689999999986510
Q ss_pred CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC--CCcEEEEeCC--CCc--ceeecccccCcEEEEEeecCCCCeE
Q 048199 411 EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY--EGIVTVWDVT--TQQ--SVMEYEEHEKRAWSVDFSRTEPSML 484 (495)
Q Consensus 411 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~--dg~v~iwd~~--~~~--~~~~~~~h~~~v~~v~~~~~~g~~l 484 (495)
. ..........+...+..++|+|| +.+|+++.. ++.|.+||+. ++. .+..+.. ...+..++|+| +|.+|
T Consensus 246 ~--~~~~~~~~~~~~~~~~~i~~spd-g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l 320 (361)
T 3scy_A 246 D--EIQTVAADTVNAQGSGDIHLSPD-GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYL 320 (361)
T ss_dssp E--EEEEEESCSSCCCCEEEEEECTT-SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEE
T ss_pred E--EeEEEecCCCCCCCcccEEECCC-CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEE
Confidence 0 00000001123345789999999 777766554 4899999996 344 3444444 45788999999 99988
Q ss_pred EEee-CCCcEe
Q 048199 485 VSGS-DDCKVL 494 (495)
Q Consensus 485 ~s~s-~D~~v~ 494 (495)
++++ .++.|.
T Consensus 321 ~~~~~~~~~v~ 331 (361)
T 3scy_A 321 LVACRDTNVIQ 331 (361)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCCEE
Confidence 8887 566665
No 212
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.78 E-value=6e-09 Score=111.71 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=89.1
Q ss_pred chhhHHhhhhhhhcccCceEEEEeeccccccCCC---cEEEEEEccCCCEEEEEeC---------CCcEEEEEccccccC
Q 048199 344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSAN---IVSSIEFDRDDQLFATAGV---------SRRIKVFDFASVVNE 411 (495)
Q Consensus 344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~p~~~~l~s~s~---------d~~i~vwd~~~~~~~ 411 (495)
...|.++.+|+... . .....+. +|.. .|.+++|+|||++|++++. |++|++||+.++..
T Consensus 32 ~~~d~~i~~~~~~~-g--~~~~~~~-----~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~- 102 (719)
T 1z68_A 32 QSADNNIVLYNIET-G--QSYTILS-----NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF- 102 (719)
T ss_dssp ECTTSCEEEEESSS-C--CEEEEEC-----HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-
T ss_pred EcCCCCEEEEEcCC-C--cEEEEEc-----cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc-
Confidence 33577888998742 1 2222222 2222 4889999999999998876 78999999988721
Q ss_pred CCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec-ccccCcE-----------------EE
Q 048199 412 PADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY-EEHEKRA-----------------WS 473 (495)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~-~~h~~~v-----------------~~ 473 (495)
+........+..++|+|| |..|+.+. ++.|++||+.++...... .++...| .+
T Consensus 103 -------~~~~~l~~~~~~~~~SPD-G~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 103 -------VRGNELPRPIQYLCWSPV-GSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp -------CCSSCCCSSBCCEEECSS-TTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred -------ccceecCcccccceECCC-CCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 000011245788999999 88888875 789999999887765432 2333322 48
Q ss_pred EEeecCCCCeEEEeeCC
Q 048199 474 VDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 474 v~~~~~~g~~l~s~s~D 490 (495)
++|+| ||.+|++++.|
T Consensus 174 ~~wSP-DG~~la~~~~d 189 (719)
T 1z68_A 174 LWWSP-NGKFLAYAEFN 189 (719)
T ss_dssp EEECT-TSSEEEEEEEE
T ss_pred EEECC-CCCEEEEEEEC
Confidence 99999 99999998865
No 213
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.77 E-value=3.8e-08 Score=101.80 Aligned_cols=143 Identities=9% Similarity=0.049 Sum_probs=104.4
Q ss_pred ccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEcc----CCCEEEEEe-CCCcEEEEEcccccc
Q 048199 336 IHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDR----DDQLFATAG-VSRRIKVFDFASVVN 410 (495)
Q Consensus 336 ~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p----~~~~l~s~s-~d~~i~vwd~~~~~~ 410 (495)
.++..+..++.|.++.+||+.. .....+..+.. ...++.++|+| +|+++++++ .+++|.|||..+.
T Consensus 188 pdg~~l~v~~~d~~V~v~D~~~-~t~~~~~~i~~------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-- 258 (543)
T 1nir_A 188 ASGRYLLVIGRDARIDMIDLWA-KEPTKVAEIKI------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-- 258 (543)
T ss_dssp TTSCEEEEEETTSEEEEEETTS-SSCEEEEEEEC------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC--
T ss_pred CCCCEEEEECCCCeEEEEECcC-CCCcEEEEEec------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc--
Confidence 4555667777778999999821 12344555542 34689999999 999998887 4899999998875
Q ss_pred CCCCcCCCeeec------------CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee--ecccccCcEEEEEe
Q 048199 411 EPADVHCPVVEM------------PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM--EYEEHEKRAWSVDF 476 (495)
Q Consensus 411 ~~~~~~~~~~~~------------~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~--~~~~h~~~v~~v~~ 476 (495)
.++..+ .....+.++.|+|+++.++++...++.|.+||..++..+. .+ .+...+..++|
T Consensus 259 ------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~ 331 (543)
T 1nir_A 259 ------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGW 331 (543)
T ss_dssp ------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEE
T ss_pred ------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceE
Confidence 111111 1233789999999867788899999999999998876544 44 46677889999
Q ss_pred ecCCCCeEEEe-eCCCcEeC
Q 048199 477 SRTEPSMLVSG-SDDCKVLY 495 (495)
Q Consensus 477 ~~~~g~~l~s~-s~D~~v~l 495 (495)
+| +|.+|+++ ..|++|.+
T Consensus 332 sp-dg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 332 DS-SHRYFMTAANNSNKVAV 350 (543)
T ss_dssp CT-TSCEEEEEEGGGTEEEE
T ss_pred CC-CCCEEEEEecCCCeEEE
Confidence 99 98876654 45777764
No 214
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.76 E-value=5.2e-08 Score=94.38 Aligned_cols=135 Identities=10% Similarity=-0.005 Sum_probs=89.2
Q ss_pred hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeeecC--
Q 048199 347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMP-- 423 (495)
Q Consensus 347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~-- 423 (495)
+..+.+|++.. .....+..+. .|...+..++|+|+|++|++++ .+++|.+|++..... ...+....
T Consensus 62 ~~~v~~~~~~~-g~~~~~~~~~-----~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~ 130 (347)
T 3hfq_A 62 EGGIAAWQIDG-QTAHKLNTVV-----APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA-----LTLTDTVQHS 130 (347)
T ss_dssp EEEEEEEEEET-TEEEEEEEEE-----EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC-----EEEEEEEECC
T ss_pred CceEEEEEecC-CcEEEeeeee-----cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC-----eeecceeecC
Confidence 56788888731 2223333332 4566788999999999888877 789999999964200 01111111
Q ss_pred --------CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC-CCcce--eecccc-cCcEEEEEeecCCCCeEEE-eeCC
Q 048199 424 --------TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT-TQQSV--MEYEEH-EKRAWSVDFSRTEPSMLVS-GSDD 490 (495)
Q Consensus 424 --------~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~-~~~~~--~~~~~h-~~~v~~v~~~~~~g~~l~s-~s~D 490 (495)
....+.+++|+|+ +.+++++..++.|.+||+. ++... ..+..+ ...+..++|+| +|.+|+. +..+
T Consensus 131 ~~~p~~~~~~~~~~~~~~spd-g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~ 208 (347)
T 3hfq_A 131 GHGPRPEQDGSHIHYTDLTPD-NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELS 208 (347)
T ss_dssp CCCSSTTCSSCCEEEEEECTT-SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred CCCCCccccCCCceEEEECCC-CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCC
Confidence 1235889999999 6688888888999999998 45432 222222 23677899999 9986655 4556
Q ss_pred CcEe
Q 048199 491 CKVL 494 (495)
Q Consensus 491 ~~v~ 494 (495)
+.|+
T Consensus 209 ~~v~ 212 (347)
T 3hfq_A 209 SQIA 212 (347)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 6664
No 215
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=3.2e-09 Score=78.40 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=42.2
Q ss_pred CCccccccccchhh--hccccCCC-----CccchhhHHhhhcCC--CCCCCCCCcCccC
Q 048199 50 DKDMLCPICMQIIK--EAFLTACG-----HSFCYMCIITHLRNK--SDCPCCGHYLTNN 99 (495)
Q Consensus 50 ~~~l~C~IC~~~~~--~Pv~l~CG-----H~FC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 99 (495)
.++..|+||++.|. +++++||. |.|+..||.+|+... .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34567999999884 67888996 999999999999876 4899999998753
No 216
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.70 E-value=9.2e-08 Score=91.75 Aligned_cols=139 Identities=9% Similarity=0.099 Sum_probs=90.0
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC---cEEEEEccccccCCCCcCC
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR---RIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~---~i~vwd~~~~~~~~~~~~~ 417 (495)
+..+..+..+.+|+... .+. ....+. .+...+.+++|+|++++++++..++ .|.+||+.++ .
T Consensus 55 ~~~~~~~~~i~~~d~~~-~~~-~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~--------~ 119 (331)
T 3u4y_A 55 VVTSDFCQTLVQIETQL-EPP-KVVAIQ-----EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN--------K 119 (331)
T ss_dssp EEEESTTCEEEEEECSS-SSC-EEEEEE-----ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT--------E
T ss_pred EEEeCCCCeEEEEECCC-Cce-eEEecc-----cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC--------C
Confidence 34444466777887742 221 133333 3445555599999999988555553 8999999876 3
Q ss_pred CeeecCCCCCeEEEEEcCCCCCEEEEecCCCc-EEEEeCCCCccee----ecccccCcEEEEEeecCCCCeE-EEeeCCC
Q 048199 418 PVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI-VTVWDVTTQQSVM----EYEEHEKRAWSVDFSRTEPSML-VSGSDDC 491 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~-v~iwd~~~~~~~~----~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~ 491 (495)
.+..+.....+.+++|+|++..+++++..++. |.+||+.....+. ....+...+..++|+| +|.+| +++..++
T Consensus 120 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~ 198 (331)
T 3u4y_A 120 FISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGN 198 (331)
T ss_dssp EEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTT
T ss_pred eEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCC
Confidence 33344455667999999993345566666688 9999987543321 1112345678999999 88855 5555677
Q ss_pred cEeC
Q 048199 492 KVLY 495 (495)
Q Consensus 492 ~v~l 495 (495)
.|++
T Consensus 199 ~v~v 202 (331)
T 3u4y_A 199 SIGI 202 (331)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7753
No 217
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.70 E-value=2.3e-08 Score=107.67 Aligned_cols=143 Identities=10% Similarity=0.032 Sum_probs=94.4
Q ss_pred ccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC---------CcEEEEE
Q 048199 334 NIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS---------RRIKVFD 404 (495)
Q Consensus 334 ~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d---------~~i~vwd 404 (495)
+..++..+.++ |+++.+|++.. .+ ....+....+..+.....++.|+|||++|+.++.+ +.+.+||
T Consensus 24 w~~dg~~~~~~--~~~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 24 WISDHEYLYKQ--ENNILVFNAEY-GN--SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp ECSSSEEEEEE--TTEEEEEETTT-CC--EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ECCCCcEEEEc--CCcEEEEECCC-Cc--eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 33445555554 77899999743 22 22223321111222334568999999999998876 4566999
Q ss_pred ccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee-ecccccCcE------------
Q 048199 405 FASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM-EYEEHEKRA------------ 471 (495)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~-~~~~h~~~v------------ 471 (495)
+.++ .......+...+...+|+|| |..|+.+. |+.|.+||+.++.... +..++...+
T Consensus 99 ~~~~--------~~~~l~~~~~~~~~~~~SPd-G~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 99 LNKR--------QLITEERIPNNTQWVTWSPV-GHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp TTTT--------EECCSSCCCTTEEEEEECSS-TTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred CCCC--------cEEEcccCCCcceeeEECCC-CCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 9987 11222345667999999999 88888774 7899999998876543 223333322
Q ss_pred -----EEEEeecCCCCeEEEeeCCCc
Q 048199 472 -----WSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 472 -----~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.++.||| ||.+||.++.|.+
T Consensus 169 ~~~~~~~~~wSp-Dg~~la~~~~d~~ 193 (740)
T 4a5s_A 169 VFSAYSALWWSP-NGTFLAYAQFNDT 193 (740)
T ss_dssp TSSSSBCEEECT-TSSEEEEEEEECT
T ss_pred hcCCCcceEECC-CCCEEEEEEEccc
Confidence 2489999 9999999876543
No 218
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.69 E-value=8.5e-08 Score=92.69 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=93.7
Q ss_pred hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCE-EEEEeCCCcEEEEEccccccCCCCcCCCeeecC--
Q 048199 347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQL-FATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-- 423 (495)
Q Consensus 347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-- 423 (495)
+..+.+|+... ...+..+.. ...+.+++|+|++++ ++++..++.|.+||..++ ..+..+.
T Consensus 68 ~~~v~~~d~~~---~~~~~~~~~------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--------~~~~~~~~~ 130 (353)
T 3vgz_A 68 GGVVYRLDPVT---LEVTQAIHN------DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--------EVKGRLVLD 130 (353)
T ss_dssp SEEEEEECTTT---CCEEEEEEE------SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC--------CEEEEEESC
T ss_pred CccEEEEcCCC---CeEEEEEec------CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC--------eeEEEEecC
Confidence 45788888742 233444432 234678999999984 555666899999999886 1111111
Q ss_pred CC--------CCeEEEEEcCCCCCEEEEec--CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 424 TR--------SKLSCLSWNKFSKNRIASSD--YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 424 ~~--------~~i~~~~~~p~~~~~l~sg~--~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
.. ..+.++.|+|+ +.+++.++ .++.|.+||..+++.+..+..+...+.+++|+| ++.+|++++.|+.|
T Consensus 131 ~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i 208 (353)
T 3vgz_A 131 DRKRTEEVRPLQPRELVADDA-TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGEL 208 (353)
T ss_dssp CCCCCSSCCCCEEEEEEEETT-TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEE
T ss_pred CCccccccCCCCCceEEECCC-CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeE
Confidence 11 12789999999 66666655 478999999999998888876666788999999 99999999888877
Q ss_pred e
Q 048199 494 L 494 (495)
Q Consensus 494 ~ 494 (495)
.
T Consensus 209 ~ 209 (353)
T 3vgz_A 209 I 209 (353)
T ss_dssp E
T ss_pred E
Confidence 5
No 219
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.68 E-value=1.7e-08 Score=108.04 Aligned_cols=106 Identities=11% Similarity=0.013 Sum_probs=79.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC------------------CeEEEEEcC
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS------------------KLSCLSWNK 435 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~------------------~i~~~~~~p 435 (495)
+|...|..++|+|||+.|++++. +.|++||+.++. .......+.. .+.++.|+|
T Consensus 111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp 182 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP 182 (723)
T ss_dssp CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred cccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-------eEEEecCCCCCceECcccceeEEEEeccCcceEEECC
Confidence 45566899999999999999885 799999998761 1111111111 337899999
Q ss_pred CCCCEEEEecCCC----------------------------------cEEEEeCCCCcceeecccc------cCcEEEEE
Q 048199 436 FSKNRIASSDYEG----------------------------------IVTVWDVTTQQSVMEYEEH------EKRAWSVD 475 (495)
Q Consensus 436 ~~~~~l~sg~~dg----------------------------------~v~iwd~~~~~~~~~~~~h------~~~v~~v~ 475 (495)
| +..|++++.|+ .|.+||+.++.....+..+ ...+..++
T Consensus 183 D-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (723)
T 1xfd_A 183 D-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK 261 (723)
T ss_dssp T-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred C-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEE
Confidence 9 88888877553 7999999988765666554 67899999
Q ss_pred eecCCCCeEEEeeC
Q 048199 476 FSRTEPSMLVSGSD 489 (495)
Q Consensus 476 ~~~~~g~~l~s~s~ 489 (495)
|+| ||.+|++.+.
T Consensus 262 ~Sp-Dg~~l~~~~~ 274 (723)
T 1xfd_A 262 WAT-STKVAVTWLN 274 (723)
T ss_dssp ESS-SSEEEEEEEE
T ss_pred EeC-CCeEEEEEEc
Confidence 999 9998877653
No 220
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.68 E-value=3.7e-08 Score=105.30 Aligned_cols=133 Identities=12% Similarity=0.028 Sum_probs=90.4
Q ss_pred hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccc-----cccC-C-CCcCCCe
Q 048199 347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFAS-----VVNE-P-ADVHCPV 419 (495)
Q Consensus 347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~-----~~~~-~-~~~~~~~ 419 (495)
+..+.+|++.. .. ...+. .+...+.+++|+|+|+.|+++ .|+.|++||+.+ +... + ......+
T Consensus 100 ~~~i~~~d~~~---~~-~~~l~-----~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 100 QGGLVGFDMLA---RK-VTYLF-----DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp TTEEEEEETTT---TE-EEEEE-----CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred CCEEEEEECCC---Cc-eEEcc-----CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 46788888742 12 22222 445678899999999999885 689999999987 5110 0 0000000
Q ss_pred e-----ecCCCCCeEEEEEcCCCCCEEEEec---------------------------------CCCcEEEEeCCCCcce
Q 048199 420 V-----EMPTRSKLSCLSWNKFSKNRIASSD---------------------------------YEGIVTVWDVTTQQSV 461 (495)
Q Consensus 420 ~-----~~~~~~~i~~~~~~p~~~~~l~sg~---------------------------------~dg~v~iwd~~~~~~~ 461 (495)
. ...+...+.++.|+|| +.+|++++ .+..|.+||+.++...
T Consensus 170 ~~g~~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred EcccchhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 0 0001122578999999 88888887 4467999999988765
Q ss_pred eecc--cccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 462 MEYE--EHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 462 ~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
.... .|...+..++|+| ||.+|++++.|+
T Consensus 249 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~ 279 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLSWSP-DENILYVAEVNR 279 (706)
T ss_dssp ECCCCSCTTCEEEEEEECT-TSSEEEEEEECT
T ss_pred eeccCCCCceeEeeEEEEC-CCCEEEEEEeCC
Confidence 4442 5777899999999 999999887664
No 221
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.66 E-value=3.2e-07 Score=89.33 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=79.1
Q ss_pred CCcEEEEEEccCCCEEEEE-eCCCcEEEEEcccccc----C-CCCc-CCCeeecCCCCCeEEEEEcCCCCCEEEEec-CC
Q 048199 376 ANIVSSIEFDRDDQLFATA-GVSRRIKVFDFASVVN----E-PADV-HCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YE 447 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~-s~d~~i~vwd~~~~~~----~-~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~d 447 (495)
...+.+++|+|+|++++.+ ..++.|.+|++..... . +... ............+..++|+|+ +.+++.++ .+
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~ 232 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD-GKFAYLINEIG 232 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTT
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC-CCEEEEEcCCC
Confidence 4457889999999966554 4589999999986511 0 1000 001223345567889999999 77666655 68
Q ss_pred CcEEEEeCCCCcc--eeec---ccccCcEEEEEeecCCCCeEEEeeCC--CcEe
Q 048199 448 GIVTVWDVTTQQS--VMEY---EEHEKRAWSVDFSRTEPSMLVSGSDD--CKVL 494 (495)
Q Consensus 448 g~v~iwd~~~~~~--~~~~---~~h~~~v~~v~~~~~~g~~l~s~s~D--~~v~ 494 (495)
+.|.+||+.++.. +..+ ..+...+..++|+| +|.+|+++..+ +.|.
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVA 285 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEE
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEE
Confidence 9999999987643 2222 33445578999999 99988666554 6665
No 222
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.64 E-value=5.6e-08 Score=93.76 Aligned_cols=133 Identities=6% Similarity=-0.036 Sum_probs=90.7
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
...++++..+.++.+|+... ...+..+.. ++...+..++|+|+++++ +++..++.|.+||+.++
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~---~~~~~~~~~----~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-------- 75 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVAS---DTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-------- 75 (349)
T ss_dssp CEEEEEEETTTEEEEEETTT---TEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--------
T ss_pred CEEEEEeCCCCeEEEEECCC---CcEEEEEec----CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--------
Confidence 34566777788999999742 334444442 222257789999999855 56667899999999876
Q ss_pred CCeeec--CC-----CCCeEEEEEcCCCCCEEEEecCC------------CcEEEEeCCCCcce---eecccccCcEEEE
Q 048199 417 CPVVEM--PT-----RSKLSCLSWNKFSKNRIASSDYE------------GIVTVWDVTTQQSV---MEYEEHEKRAWSV 474 (495)
Q Consensus 417 ~~~~~~--~~-----~~~i~~~~~~p~~~~~l~sg~~d------------g~v~iwd~~~~~~~---~~~~~h~~~v~~v 474 (495)
.....+ .+ ...+..++|+|+ +.+|++++.+ +.|.+||+.++... ..+. +...+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~ 153 (349)
T 1jmx_B 76 KNTFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLM 153 (349)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCE
T ss_pred cEEEEEEcccccccccccccceEECCC-CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccce
Confidence 122222 11 123678999999 8888888765 89999999885443 3333 33468899
Q ss_pred EeecCCCCeEEEeeC
Q 048199 475 DFSRTEPSMLVSGSD 489 (495)
Q Consensus 475 ~~~~~~g~~l~s~s~ 489 (495)
+|+| +|. ++.++.
T Consensus 154 ~~s~-dg~-l~~~~~ 166 (349)
T 1jmx_B 154 RAAD-DGS-LYVAGP 166 (349)
T ss_dssp EECT-TSC-EEEESS
T ss_pred eECC-CCc-EEEccC
Confidence 9999 888 555544
No 223
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.64 E-value=7.9e-08 Score=92.12 Aligned_cols=110 Identities=10% Similarity=0.114 Sum_probs=73.2
Q ss_pred cccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe------------CCCcEEEEEcccc
Q 048199 341 YNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG------------VSRRIKVFDFASV 408 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s------------~d~~i~vwd~~~~ 408 (495)
+.++..+..+.+|+... ...+..+..+....|...+.+++|+|+++++++++ .++.|.+||+.++
T Consensus 49 ~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 125 (337)
T 1pby_B 49 YATVNKSESLVKIDLVT---GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL 125 (337)
T ss_dssp EEEETTTTEEEEEETTT---CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred EEEeCCCCeEEEEECCC---CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC
Confidence 34555667888888742 23333343211000223567899999999888876 5799999999875
Q ss_pred ccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec
Q 048199 409 VNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY 464 (495)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~ 464 (495)
.....+.....+.+++|+|+ +.+|+++ ++.|.+||+.+++.+..+
T Consensus 126 --------~~~~~~~~~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 126 --------SRRKAFEAPRQITMLAWARD-GSKLYGL--GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp --------EEEEEEECCSSCCCEEECTT-SSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred --------cEEEEEeCCCCcceeEECCC-CCEEEEe--CCeEEEEECCCCcEeeee
Confidence 22233333456788999999 7777777 688999999877655433
No 224
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.62 E-value=9.6e-08 Score=106.85 Aligned_cols=107 Identities=7% Similarity=-0.027 Sum_probs=90.4
Q ss_pred cCCC-cEEEEEEccCCCEEEEEeCCCcEE-EEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 374 HSAN-IVSSIEFDRDDQLFATAGVSRRIK-VFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 374 ~h~~-~V~~l~~~p~~~~l~s~s~d~~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
.|.. .+..+.|+ +|+.|++++.+..+. +||+..+ .......+...+..++|+|| +.+|++++.++.|+
T Consensus 334 ~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~--------~~~~l~~~~~~~~~~~~SpD-G~~la~~~~~~~v~ 403 (1045)
T 1k32_A 334 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG--------KAEKFEENLGNVFAMGVDRN-GKFAVVANDRFEIM 403 (1045)
T ss_dssp CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC--------CEEECCCCCCSEEEEEECTT-SSEEEEEETTSEEE
T ss_pred CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC--------CceEecCCccceeeeEECCC-CCEEEEECCCCeEE
Confidence 5666 89999999 999999998888888 8898765 22222256678999999999 99999999999999
Q ss_pred EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
+||+.++.....+.+|...+.+++|+| ||.+|++++.++
T Consensus 404 ~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~ 442 (1045)
T 1k32_A 404 TVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLK 442 (1045)
T ss_dssp EEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEEC
T ss_pred EEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCc
Confidence 999999988888878999999999999 999998887654
No 225
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.60 E-value=5.6e-07 Score=84.44 Aligned_cols=137 Identities=10% Similarity=0.184 Sum_probs=95.8
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
..+++...+..+.+|+.. . ..+..+... ++...+.+|+++|+++++++...++.|++||.... .
T Consensus 133 ~l~v~~~~~~~i~~~~~~--g--~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---------~ 196 (286)
T 1q7f_A 133 RIIVVECKVMRVIIFDQN--G--NVLHKFGCS---KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---------Y 196 (286)
T ss_dssp CEEEEETTTTEEEEECTT--S--CEEEEEECT---TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---------E
T ss_pred CEEEEECCCCEEEEEcCC--C--CEEEEeCCC---CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC---------E
Confidence 334444445566677642 1 222233210 34567899999999998888888999999997543 1
Q ss_pred eeecC---CCCCeEEEEEcCCCCCEEEEecCCC-cEEEEeCCCCcceeecccccC--cEEEEEeecCCCCeEEEeeCCCc
Q 048199 419 VVEMP---TRSKLSCLSWNKFSKNRIASSDYEG-IVTVWDVTTQQSVMEYEEHEK--RAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 419 ~~~~~---~~~~i~~~~~~p~~~~~l~sg~~dg-~v~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
+..+. +...+..++++++ +.++++...++ .|.+||. ++..+..+..+.. .+.+++|+| +|.++++ +.|++
T Consensus 197 ~~~~~~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~~~ 272 (286)
T 1q7f_A 197 LRQIGGEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVLA-SKDYR 272 (286)
T ss_dssp EEEESCTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEEE-ETTTE
T ss_pred EEEEccCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC-CCcEEEE-CCCCe
Confidence 22222 2256899999999 88888888776 9999995 5777777766543 478999999 9987777 57888
Q ss_pred EeC
Q 048199 493 VLY 495 (495)
Q Consensus 493 v~l 495 (495)
|++
T Consensus 273 v~v 275 (286)
T 1q7f_A 273 LYI 275 (286)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 226
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.59 E-value=4.8e-08 Score=101.99 Aligned_cols=132 Identities=11% Similarity=-0.030 Sum_probs=93.6
Q ss_pred ccccCcccchhh----HHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCC--cEEEEEccccc
Q 048199 336 IHREGYNAGLAD----FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSR--RIKVFDFASVV 409 (495)
Q Consensus 336 ~~~~~~~~g~~d----~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~--~i~vwd~~~~~ 409 (495)
+++..++.++.+ ..+.+|++.. .+ ...+. +|.+.+.+++|+|||+.|+++..++ .|++||+.++
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~-g~---~~~l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~- 228 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSS-GG---LRVFD-----SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG- 228 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTT-CC---CEEEC-----CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC-
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCC-CC---ceEee-----cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC-
Confidence 445555544444 4566666532 11 12222 6788899999999999999888888 8999999876
Q ss_pred cCCCCcCCCeeecCCCCCeEEEE--------EcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCC
Q 048199 410 NEPADVHCPVVEMPTRSKLSCLS--------WNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEP 481 (495)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~~--------~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g 481 (495)
.......+...+..+. |+|| +.++++++.||+++||++ |+.+. .+.+.|.+++|+ ++
T Consensus 229 -------~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg 293 (582)
T 3o4h_A 229 -------SVEDLELPSKDFSSYRPTAITWLGYLPD-GRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW--RG 293 (582)
T ss_dssp -------CEEECCCSCSHHHHHCCSEEEEEEECTT-SCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE--TT
T ss_pred -------cEEEccCCCcChhhhhhccccceeEcCC-CcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec--CC
Confidence 1222223444455555 9999 699999999999999999 66554 234678999999 77
Q ss_pred CeEEEeeCCCc
Q 048199 482 SMLVSGSDDCK 492 (495)
Q Consensus 482 ~~l~s~s~D~~ 492 (495)
.++++++.+.+
T Consensus 294 ~~l~~~s~~~~ 304 (582)
T 3o4h_A 294 KLVTSHTSLST 304 (582)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEcCCCC
Confidence 88888887654
No 227
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.57 E-value=1.6e-07 Score=99.46 Aligned_cols=108 Identities=6% Similarity=-0.078 Sum_probs=83.5
Q ss_pred CCCcEEEEEEccCCCEEEEEeCC----------CcEEEEEccc------cccCCCCcCCCeeec-CCCCCeEEEEEcCCC
Q 048199 375 SANIVSSIEFDRDDQLFATAGVS----------RRIKVFDFAS------VVNEPADVHCPVVEM-PTRSKLSCLSWNKFS 437 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d----------~~i~vwd~~~------~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~ 437 (495)
|...+.+++|+|||+.|++++.| ..|.+||+.+ + ...... .+...+..++|+||
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~SpD- 198 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS--------AVRELSDDAHRFVTGPRLSPD- 198 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG--------GSEESSCSCSSEECCCEECTT-
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC--------ceeEEEecCCCcccCceECCC-
Confidence 66788999999999999988877 5899999987 4 122222 34456778999999
Q ss_pred CCEEEEecCC--------CcEEEEeCC-CC---cceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 438 KNRIASSDYE--------GIVTVWDVT-TQ---QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 438 ~~~l~sg~~d--------g~v~iwd~~-~~---~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
|.+|+.++.+ ..|.+||+. ++ .......+|...+..+.|+| ||.++++++.|+.
T Consensus 199 G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~ 264 (662)
T 3azo_A 199 GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGW 264 (662)
T ss_dssp SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSS
T ss_pred CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCC
Confidence 8888877655 379999998 56 44444455678899999999 9998888888874
No 228
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.56 E-value=4.1e-08 Score=105.19 Aligned_cols=109 Identities=7% Similarity=-0.039 Sum_probs=76.2
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-CC-CcCCCeeecCCC---------CCeEEEEEcCCCCCEEEEec
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-PA-DVHCPVVEMPTR---------SKLSCLSWNKFSKNRIASSD 445 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-~~-~~~~~~~~~~~~---------~~i~~~~~~p~~~~~l~sg~ 445 (495)
..+..++|+|||+.|++++ |+.|++||+.++... +. .........++. ....+++|+|| |..|++++
T Consensus 110 ~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~ 187 (719)
T 1z68_A 110 RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAE 187 (719)
T ss_dssp SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEE
T ss_pred cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC-CCEEEEEE
Confidence 4588999999999999886 889999999876110 00 000000011111 11258999999 88998887
Q ss_pred CCC----------------------------------cEEEEeCCCCcce--------eecccccCcEEEEEeecCCCCe
Q 048199 446 YEG----------------------------------IVTVWDVTTQQSV--------MEYEEHEKRAWSVDFSRTEPSM 483 (495)
Q Consensus 446 ~dg----------------------------------~v~iwd~~~~~~~--------~~~~~h~~~v~~v~~~~~~g~~ 483 (495)
.|. .|.+||+.++... ..+.+|...+..++|+| |+.+
T Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~ 266 (719)
T 1z68_A 188 FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERV 266 (719)
T ss_dssp EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEE
T ss_pred ECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeE
Confidence 652 7889999987653 33557888999999999 8877
Q ss_pred EEEee
Q 048199 484 LVSGS 488 (495)
Q Consensus 484 l~s~s 488 (495)
+++..
T Consensus 267 ~~~~~ 271 (719)
T 1z68_A 267 CLQWL 271 (719)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77744
No 229
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.56 E-value=9.7e-08 Score=92.05 Aligned_cols=100 Identities=9% Similarity=0.030 Sum_probs=76.6
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC--CeEEEEEcCCCCC-EEEEecCCCcEEEEeCCC
Q 048199 381 SIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS--KLSCLSWNKFSKN-RIASSDYEGIVTVWDVTT 457 (495)
Q Consensus 381 ~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~~ 457 (495)
++++++++.++++++.+++|.+||+.++ .....+.... .+..++|+|+ +. +++++..++.|.+||+.+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTT
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC--------cEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCC
Confidence 4567888999999999999999999886 2222222222 5789999999 65 456677889999999999
Q ss_pred Ccceeeccccc------CcEEEEEeecCCCCeEEEeeCC
Q 048199 458 QQSVMEYEEHE------KRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 458 ~~~~~~~~~h~------~~v~~v~~~~~~g~~l~s~s~D 490 (495)
++.+..+..+. ..+..++|+| +|.+|++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~ 112 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNP 112 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEE
T ss_pred CcEEEEEEcccccccccccccceEECC-CCCEEEEEccc
Confidence 88877665322 2378899999 99999988855
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.51 E-value=6.1e-07 Score=87.77 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=78.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
+.+ |+.|+| ++.+|+++ .++.|++||+.+.. .......+...+.++.+.+. .++.++.||.|.+||
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~-------~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~d 152 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS-------EFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALD 152 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT-------CEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEE
T ss_pred CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh-------ccCccceeecceeeEEecCC---CEEEEECCCCEEEEE
Confidence 445 999999 88999888 88999999998861 11122344556888887754 388889999999999
Q ss_pred CCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
+.++.... +...|.+++|+| +| ++.|..||+|++
T Consensus 153 l~~~~~~~----~~~~Vs~v~WSp-kG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 153 LRTKSTKQ----LAQNVTSFDVTN-SQ--LAVLLKDRSFQS 186 (388)
T ss_dssp TTTCCEEE----EEESEEEEEECS-SE--EEEEETTSCEEE
T ss_pred ccCCcccc----ccCCceEEEEcC-Cc--eEEEEcCCcEEE
Confidence 99776543 556899999999 88 778889998863
No 231
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.49 E-value=3.3e-07 Score=89.61 Aligned_cols=145 Identities=8% Similarity=0.018 Sum_probs=89.8
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCE--EEEEe-------------CCCcEE
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQL--FATAG-------------VSRRIK 401 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~--l~s~s-------------~d~~i~ 401 (495)
++..+..+..+ .+.+|++....+...+.... .+ +.+..++|+|+|++ +++++ .++++.
T Consensus 50 dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-----~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~ 122 (365)
T 1jof_A 50 ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-----IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN 122 (365)
T ss_dssp TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-----CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred CCCEEEEEccc-eEEEEEECCCCCEEEeeEee-----cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence 33434445444 78888874112211111111 11 22456889999994 45553 689999
Q ss_pred EEEccccccCCCCcCCCeeec--CCCCCeEEEEEcCCCCCEEEEec-CCCcEEEEeCC-CCcce--eecc--cccCcEEE
Q 048199 402 VFDFASVVNEPADVHCPVVEM--PTRSKLSCLSWNKFSKNRIASSD-YEGIVTVWDVT-TQQSV--MEYE--EHEKRAWS 473 (495)
Q Consensus 402 vwd~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd~~-~~~~~--~~~~--~h~~~v~~ 473 (495)
+|++..... ....+..+ .+...+.+++|+|+ +.+|++++ .++.|.+||+. +++.. ..+. .|...+..
T Consensus 123 v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 123 VFSVSETGK----LEKNVQNYEYQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp EEEECTTCC----EEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred EEccCCCCc----CcceEeeEEeCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 999974200 00111111 24567999999999 77777665 46799999998 67542 3333 24567899
Q ss_pred EEeecCCCCeEEEeeC-CCcEe
Q 048199 474 VDFSRTEPSMLVSGSD-DCKVL 494 (495)
Q Consensus 474 v~~~~~~g~~l~s~s~-D~~v~ 494 (495)
++|+| +|.+|++++. ++.|.
T Consensus 198 ~~~sp-dg~~l~v~~~~~~~v~ 218 (365)
T 1jof_A 198 VAMHP-TGNYLYALMEAGNRIC 218 (365)
T ss_dssp EEECT-TSSEEEEEETTTTEEE
T ss_pred eEECC-CCCEEEEEECCCCeEE
Confidence 99999 9998887764 56664
No 232
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.46 E-value=3.6e-07 Score=97.54 Aligned_cols=109 Identities=15% Similarity=0.043 Sum_probs=79.5
Q ss_pred cCCCcEEEEEEccCCCEEE-----EEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC
Q 048199 374 HSANIVSSIEFDRDDQLFA-----TAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG 448 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~-----s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg 448 (495)
+|...+.+++|+|||++|+ +|+.+.+|++||+.++... . ..... ......++|+|| +..|+.++.|.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~-----~-~~~~~-~~~~~~~~wspD-g~~l~~~~~d~ 189 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS-----K-VDVIE-GGKYATPKWTPD-SKGFYYEWLPT 189 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC-----S-SCCBS-CCTTCCCEECTT-SSEEEEEECCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc-----C-CcccC-cccccceEEecC-CCEEEEEEecC
Confidence 4666789999999999988 4444578999999987211 0 00111 112267899999 88888888877
Q ss_pred c-------------EEEEeCCCCc----ceeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 449 I-------------VTVWDVTTQQ----SVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 449 ~-------------v~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
. |++|++.++. .+....+|...+.++.|+| ||.+|+.++.++
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~ 248 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRG 248 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEET
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCC
Confidence 6 9999998876 3334445667889999999 999888877655
No 233
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.46 E-value=2.7e-07 Score=98.49 Aligned_cols=100 Identities=10% Similarity=-0.051 Sum_probs=77.1
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
..|.+++|+|+ ..++.+ .|++|++||+.++ .......+...+.+++|+|| +..|+++ .|+.|.+||+.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~--------~~~~l~~~~~~~~~~~~Spd-G~~la~~-~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR--------KVTYLFDTNEETASLDFSPV-GDRVAYV-RNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT--------EEEEEECCTTCCTTCEECTT-SSEEEEE-ETTEEEEEECB
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC--------ceEEccCCcccccCCcCCCC-CCEEEEE-ECCeEEEEecC
Confidence 56999999999 655554 3699999999876 22333445567888999999 8888885 68999999999
Q ss_pred C-----CcceeecccccCc--------------EEEEEeecCCCCeEEEeeC
Q 048199 457 T-----QQSVMEYEEHEKR--------------AWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 457 ~-----~~~~~~~~~h~~~--------------v~~v~~~~~~g~~l~s~s~ 489 (495)
+ +........+... +.++.|+| ||.+|++++.
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 8 7766555444433 48899999 9999999883
No 234
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.43 E-value=4.2e-07 Score=88.92 Aligned_cols=130 Identities=9% Similarity=0.047 Sum_probs=94.9
Q ss_pred ccccccccccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc
Q 048199 330 ESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV 409 (495)
Q Consensus 330 ~~~~~~~~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~ 409 (495)
+....+ ++..+..+ .++.+.+|++..+.... ... .|...|.++.+.+. .++++..||+|.+||+..+
T Consensus 90 V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~---~~~-----~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~- 156 (388)
T 1xip_A 90 VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFR---TVT-----SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK- 156 (388)
T ss_dssp EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEE---EEE-----ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-
T ss_pred eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccC---ccc-----eeecceeeEEecCC--CEEEEECCCCEEEEEccCC-
Confidence 334444 66666666 77889999986554322 222 44566888877654 3888999999999999876
Q ss_pred cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcc--eeec------c---cccCcEEEEEeec
Q 048199 410 NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQS--VMEY------E---EHEKRAWSVDFSR 478 (495)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~--~~~~------~---~h~~~v~~v~~~~ 478 (495)
... .+...|.+++|+|+ | ++.|..||++++|+...+.. ..++ . +|...|.+|.|.+
T Consensus 157 -------~~~---~~~~~Vs~v~WSpk-G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 157 -------STK---QLAQNVTSFDVTNS-Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp -------CEE---EEEESEEEEEECSS-E--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred -------ccc---cccCCceEEEEcCC-c--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 111 13357999999999 6 67888999999999887664 4555 3 4788999999999
Q ss_pred CCCCeEEE
Q 048199 479 TEPSMLVS 486 (495)
Q Consensus 479 ~~g~~l~s 486 (495)
++.+|++
T Consensus 224 -~~~flv~ 230 (388)
T 1xip_A 224 -PQDFLAV 230 (388)
T ss_dssp -SSEEEEE
T ss_pred -CCeEEEE
Confidence 8888876
No 235
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=2.1e-07 Score=67.00 Aligned_cols=46 Identities=22% Similarity=0.678 Sum_probs=39.0
Q ss_pred ccccccccchhhhcc-ccCCCCccchhhHHhhhcCC--CCCCCCCCcCc
Q 048199 52 DMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNK--SDCPCCGHYLT 97 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~ 97 (495)
.-.|+||.+++..-. ...|+|.|...||.+|++.. .+||.||....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 356999999998433 33899999999999999887 79999998875
No 236
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.37 E-value=1.1e-06 Score=94.09 Aligned_cols=106 Identities=17% Similarity=0.265 Sum_probs=76.9
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCC-----cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSR-----RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG 448 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg 448 (495)
+|+..+.+++|+|||++|+.++.++ .|++||+.++ ...........+..++|+|| +..|+.++.++
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--------~~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~ 192 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--------KELPDVLERVKFSCMAWTHD-GKGMFYNAYPQ 192 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--------EEEEEEEEEECSCCEEECTT-SSEEEEEECCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--------CCCcccccCcccceEEEEeC-CCEEEEEEECC
Confidence 3555688999999999988766543 8999999987 11111111223567999999 88888877776
Q ss_pred c----------------EEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 449 I----------------VTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 449 ~----------------v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
. |.+|++.++.. +.....|...+.++.|+| ||.+|+.++.
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~ 252 (710)
T 2xdw_A 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIR 252 (710)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEE
T ss_pred ccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEE
Confidence 6 99999988763 223333566788999999 9998887764
No 237
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.37 E-value=4.8e-07 Score=97.26 Aligned_cols=105 Identities=13% Similarity=0.034 Sum_probs=79.1
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCC-----CeEEEEEcCCCCCEEEEecCC----
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRS-----KLSCLSWNKFSKNRIASSDYE---- 447 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~p~~~~~l~sg~~d---- 447 (495)
....++.|+|+|++++++ |++|++||+.++. .......+.. ....+.|+|| +.+|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN-------SSVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQW 86 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCC-------EEEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECS
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCc-------eEEEEechhhhhhcccccceEECCC-CCEEEEEECCeeeE
Confidence 345688999999999886 9999999999871 1111122221 2345899999 8888888876
Q ss_pred -----CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 448 -----GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 448 -----g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+.+.+||+.+++.. .+..|...+..++||| ||..||.++ |+.|+
T Consensus 87 r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~ 135 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIY 135 (740)
T ss_dssp SSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEE
T ss_pred EEccceEEEEEECCCCcEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEE
Confidence 56679999988754 4677888899999999 999999885 45554
No 238
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.32 E-value=3e-07 Score=97.12 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=66.9
Q ss_pred ccCCCCccccccccchhhhccccCCC-CccchhhHHhhhcCCCCCCCCCCcCccCCCcchHHHHHHHHHHhHhh
Q 048199 46 VSELDKDMLCPICMQIIKEAFLTACG-HSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQ 118 (495)
Q Consensus 46 ~~~~~~~l~C~IC~~~~~~Pv~l~CG-H~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~v~~~~~~~ 118 (495)
..++.+++.|||-+++++|||+++.| ++|.+.+|++|+....+||..|++++..++.||..+...|+.+....
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence 45678899999999999999999998 69999999999998899999999999999999999999999886543
No 239
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.32 E-value=7.9e-07 Score=86.86 Aligned_cols=110 Identities=13% Similarity=0.143 Sum_probs=76.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEcc-ccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC--EEEEec-------
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFA-SVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN--RIASSD------- 445 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~--~l~sg~------- 445 (495)
...+..++|+|++++|++++.+ .|.+|++. ++.. .........+.+..++|+|+ +. ++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~------~~~~~~~~~g~~~~~~~spd-g~~l~~~~~~~~~~~~~ 110 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI------VHEASHPIGGHPRANDADTN-TRAIFLLAAKQPPYAVY 110 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE------EEEEEEECCSSGGGGCTTSC-CEEEEEEECSSTTCCEE
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE------EEeeEeecCCCCccEEECCC-CCEEEEEEecCCcceec
Confidence 3467889999999999999888 99999997 5410 01111111123556899999 76 455664
Q ss_pred ------CCCcEEEEeCC-CCcceeecc----cccCcEEEEEeecCCCCeEEEeeC-CCcEe
Q 048199 446 ------YEGIVTVWDVT-TQQSVMEYE----EHEKRAWSVDFSRTEPSMLVSGSD-DCKVL 494 (495)
Q Consensus 446 ------~dg~v~iwd~~-~~~~~~~~~----~h~~~v~~v~~~~~~g~~l~s~s~-D~~v~ 494 (495)
.+|++.+|++. .+.....+. .+...+.+++|+| +|.+|++++. ++.|+
T Consensus 111 ~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~ 170 (365)
T 1jof_A 111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLW 170 (365)
T ss_dssp EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred cceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEE
Confidence 68999999997 465544443 2456789999999 9998877653 55665
No 240
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.30 E-value=1.8e-06 Score=83.09 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=84.9
Q ss_pred CcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---CCCCCeEEEEEcC------CCCCEEEEecC
Q 048199 377 NIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNK------FSKNRIASSDY 446 (495)
Q Consensus 377 ~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p------~~~~~l~sg~~ 446 (495)
....+|+|+|+ +.++++...++.|++||..++ ..+..+ .+...+..++|+| + +..+++...
T Consensus 196 ~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G--------~~~~~~~~~~~~~~~~~~~~~pg~~~~~~-g~~~v~~~~ 266 (329)
T 3fvz_A 196 SVPHSLALVPHLDQLCVADRENGRIQCFKTDTK--------EFVREIKHASFGRNVFAISYIPGFLFAVN-GKPYFGDQE 266 (329)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTTC--------CEEEEECCTTTTTCEEEEEEETTEEEEEE-CCCCTTCSC
T ss_pred CCCcEEEEECCCCEEEEEECCCCEEEEEECCCC--------cEEEEEeccccCCCcceeeecCCEEEEeC-CCEEeccCC
Confidence 45889999998 888888889999999999865 122222 3455788999998 4 444444555
Q ss_pred CCcEEEEeCCCCcceeecc---cccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 447 EGIVTVWDVTTQQSVMEYE---EHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+..|++||..++..+..+. ++...+.+|+|+| +|.++++...+++|+
T Consensus 267 ~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 267 PVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVW 316 (329)
T ss_dssp CCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEE
T ss_pred CcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEE
Confidence 6699999999999888873 6777899999999 998889988888886
No 241
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.29 E-value=1.3e-05 Score=77.04 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=83.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCC------------------------CcEEEEEccccccCCCCcCCCeeec--CCCCCeE
Q 048199 376 ANIVSSIEFDRDDQLFATAGVS------------------------RRIKVFDFASVVNEPADVHCPVVEM--PTRSKLS 429 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d------------------------~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~i~ 429 (495)
.+.|.+|+|+|+|+++++.+.+ ++|.+||..++ ...... .+...+.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--------EILQSSGKNLFYLPH 94 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------CEEEEECTTTCSSEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------eEEeccCCCccCCce
Confidence 4569999999999999988877 47999998876 122222 2335689
Q ss_pred EEEEcCCCCCEEEEecCCCcEEEEeCCCCc-ceeec---------ccccCcEEEEEeecCCCCeEEEee-CCCcEe
Q 048199 430 CLSWNKFSKNRIASSDYEGIVTVWDVTTQQ-SVMEY---------EEHEKRAWSVDFSRTEPSMLVSGS-DDCKVL 494 (495)
Q Consensus 430 ~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~-~~~~~---------~~h~~~v~~v~~~~~~g~~l~s~s-~D~~v~ 494 (495)
.++++|+ +.++++...++.|++||..... .+..+ .++-...+.|+|+|.++.++++.+ .++.|+
T Consensus 95 gia~d~~-g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 95 GLSIDTD-GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp EEEECTT-SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred EEEECCC-CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 9999999 8899999999999999976432 45555 344557899999985678888886 577775
No 242
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.26 E-value=2.9e-05 Score=74.34 Aligned_cols=107 Identities=10% Similarity=0.010 Sum_probs=80.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC----Cc
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE----GI 449 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d----g~ 449 (495)
.+...+.+++|+|++++++++..++.|.+||..++ ........+...+.+++|+|+ +.++++...+ +.
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK-------EIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGG 113 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC-------CEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCE
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC-------cEEEEeeCCCCCcceEEECCC-CcEEEEeCCCCCCCce
Confidence 45667899999999998888888999999999875 111111134567999999999 7888877766 68
Q ss_pred EEEEeCCCCcceeecc--cccCcEEEEEeecCCCCeEEEeeC
Q 048199 450 VTVWDVTTQQSVMEYE--EHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 450 v~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
|.+||..++.....+. .+...++.++|+| +|.++++...
T Consensus 114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~ 154 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFR 154 (333)
T ss_dssp EEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECC
T ss_pred EEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEecc
Confidence 9999988766542332 2456789999999 8888887654
No 243
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.24 E-value=1.5e-05 Score=74.54 Aligned_cols=108 Identities=10% Similarity=0.114 Sum_probs=84.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---CCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
+...+.+++++|+|+++++...++.|.+||.... .+..+ .+...+..++++++ +.++++...++.|.
T Consensus 119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---------~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~ 188 (286)
T 1q7f_A 119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---------VLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVK 188 (286)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---------EEEEEECTTTCSSEEEEEECSS-SEEEEEEGGGTEEE
T ss_pred cCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC---------EEEEeCCCCccCCcEEEEECCC-CCEEEEECCCCEEE
Confidence 4567899999999998888888899999996542 11222 33456899999999 88888888899999
Q ss_pred EEeCCCCcceeecccc--cCcEEEEEeecCCCCeEEEeeCCC-cEe
Q 048199 452 VWDVTTQQSVMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDC-KVL 494 (495)
Q Consensus 452 iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~-~v~ 494 (495)
+||. .+..+..+..+ ...+.++++++ +|.++++...++ .|+
T Consensus 189 ~~~~-~g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~ 232 (286)
T 1q7f_A 189 VFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLT 232 (286)
T ss_dssp EEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEE
T ss_pred EEcC-CCCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEE
Confidence 9997 46666666543 36789999999 999888887775 665
No 244
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.21 E-value=5.6e-07 Score=67.14 Aligned_cols=45 Identities=33% Similarity=0.773 Sum_probs=38.4
Q ss_pred ccccccchhhh-ccccCCCCccchhhHHhhhcC-CCCCCCCCCcCcc
Q 048199 54 LCPICMQIIKE-AFLTACGHSFCYMCIITHLRN-KSDCPCCGHYLTN 98 (495)
Q Consensus 54 ~C~IC~~~~~~-Pv~l~CGH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~ 98 (495)
.|++|.-.+.. .+++||.|+||+.|+..|... ...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 59999888876 468999999999999999754 5799999998864
No 245
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.17 E-value=1.2e-05 Score=75.67 Aligned_cols=111 Identities=10% Similarity=-0.069 Sum_probs=82.6
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcc-ccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFA-SVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.+......++|+|+++.+++.+.++.|.+||+. .+. +. ....+. ..+...+.+++++++ +.++++. ++.|.+
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~--~~-~~~~~~-~~~~~~p~~i~~d~~-G~l~v~~--~~~v~~ 241 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE--TE-YQGVHF-TVEPGKTDGLRVDAG-GLIWASA--GDGVHV 241 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC--EE-EEEEEE-CCSSSCCCSEEEBTT-SCEEEEE--TTEEEE
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc--Cc-CCCeEe-eCCCCCCCeEEECCC-CCEEEEc--CCeEEE
Confidence 445677899999999988888888999999997 320 00 000111 123445678999999 7776666 789999
Q ss_pred EeCCCCcceeecccccCcEEEEEee-cCCCCeEEEeeCCCcEe
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFS-RTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~-~~~g~~l~s~s~D~~v~ 494 (495)
||.. +..+..+..+.. +.+++|. + ++..|+.++.++.++
T Consensus 242 ~~~~-g~~~~~~~~~~~-~~~~~f~~~-d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 242 LTPD-GDELGRVLTPQT-TSNLCFGGP-EGRTLYMTVSTEFWS 281 (296)
T ss_dssp ECTT-SCEEEEEECSSC-CCEEEEEST-TSCEEEEEETTEEEE
T ss_pred ECCC-CCEEEEEECCCC-ceeEEEECC-CCCEEEEEcCCeEEE
Confidence 9986 888888887777 9999995 6 888888888887655
No 246
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.16 E-value=8.3e-06 Score=79.54 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=70.7
Q ss_pred EEEccCCCEEEEEeC-----------CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199 382 IEFDRDDQLFATAGV-----------SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV 450 (495)
Q Consensus 382 l~~~p~~~~l~s~s~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v 450 (495)
++|+|++..++.+.. ..+|.+||+.+. ..+..+.... +++++|+|| +.+|+++.. ++|
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--------~~v~~i~~~~-p~~ia~spd-g~~l~v~n~-~~v 327 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--------QRVARIPGRD-ALSMTIDQQ-RNLMLTLDG-GNV 327 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------EEEEEEECTT-CCEEEEETT-TTEEEEECS-SCE
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------cEEEEEecCC-eeEEEECCC-CCEEEEeCC-CeE
Confidence 689999776665432 347999999886 3333333333 899999999 889998887 999
Q ss_pred EEEeCCCC--cceeecccccCcEEEEEeecCCCC
Q 048199 451 TVWDVTTQ--QSVMEYEEHEKRAWSVDFSRTEPS 482 (495)
Q Consensus 451 ~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~g~ 482 (495)
.+||..++ +.+..+..+....+.++|+| +|.
T Consensus 328 ~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 328 NVYDISQPEPKLLRTIEGAAEASLQVQFHP-VGG 360 (361)
T ss_dssp EEEECSSSSCEEEEEETTSCSSEEEEEECC-CSC
T ss_pred EEEECCCCcceeeEEeccCCCCcEEEEecC-CCC
Confidence 99999999 99999877778889999999 775
No 247
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.14 E-value=1.9e-05 Score=72.98 Aligned_cols=110 Identities=10% Similarity=0.055 Sum_probs=82.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
..+.+++++++|+++++...++.|.+||..... ...........+.+++++++ +.++++...++.|.+||..
T Consensus 150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-------QVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC-------EEECCCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTT
T ss_pred CCceeEEEeCCCCEEEEECCCCEEEEEecCCCc-------eEeecccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCC
Confidence 467899999999988888888999999987651 11111122356899999999 7888888888999999987
Q ss_pred CCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 457 TQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 457 ~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
..........+...+.++++++ +|.++++.+.+++|++
T Consensus 222 ~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~ 259 (270)
T 1rwi_B 222 STTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVK 259 (270)
T ss_dssp CSCCEECCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEE
T ss_pred CCcceeeccCCCCCceeEEECC-CCCEEEEECCCCEEEE
Confidence 5543333223445789999999 8998899888988864
No 248
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.13 E-value=7.4e-06 Score=78.90 Aligned_cols=99 Identities=15% Similarity=0.264 Sum_probs=71.2
Q ss_pred cEEEEEEccCCCEEEEEeCC---Cc--EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-----
Q 048199 378 IVSSIEFDRDDQLFATAGVS---RR--IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE----- 447 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s~s~d---~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d----- 447 (495)
.+..+.|+|+|+.|+.++.+ +. |.+||+.++ .......... +..+.|+|| +..|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--------~~~~l~~~~~-~~~~~wspd-g~~l~~~~~~~~~~~ 129 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--------SSKKILEAKN-IRSLEWNED-SRKLLIVGFKRREDE 129 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--------EEEEEEEESE-EEEEEECTT-SSEEEEEEECCCC--
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--------ceEEEEcCCC-ccceeECCC-CCEEEEEEccCCCcC
Confidence 47789999999998887754 33 677777665 1222222233 899999999 7777766532
Q ss_pred ----------------------CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 448 ----------------------GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 448 ----------------------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
..|.+||+.++..+..+.. . .+..++|+| +| ++++++.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~ 190 (347)
T 2gop_A 130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHR 190 (347)
T ss_dssp -------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECC
T ss_pred CcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecc
Confidence 5699999998876455555 4 788999999 98 88887665
No 249
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.12 E-value=8.6e-06 Score=79.43 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=82.2
Q ss_pred hhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEccccccCCCC
Q 048199 345 LADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG----------VSRRIKVFDFASVVNEPAD 414 (495)
Q Consensus 345 ~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s----------~d~~i~vwd~~~~~~~~~~ 414 (495)
..|..+.+||.. ..+.+..+.. +..+ .++|+|+++++++++ .+++|.+||+.+.
T Consensus 28 ~~d~~v~v~D~~---t~~~~~~i~~-----g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~------ 91 (361)
T 2oiz_A 28 LTESRVHVYDYT---NGKFLGMVPT-----AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL------ 91 (361)
T ss_dssp GGGCEEEEEETT---TCCEEEEEEC-----CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC------
T ss_pred cccCeEEEEECC---CCeEEEEecC-----CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC------
Confidence 345678888863 2233445543 2333 899999999988876 3678999999875
Q ss_pred cCCCeeecC-------CCCCeEEEEEcCCCCCEEEEecC--CCcEEEEeCCCCcceee-cccccCcEEEEEeecCCCCeE
Q 048199 415 VHCPVVEMP-------TRSKLSCLSWNKFSKNRIASSDY--EGIVTVWDVTTQQSVME-YEEHEKRAWSVDFSRTEPSML 484 (495)
Q Consensus 415 ~~~~~~~~~-------~~~~i~~~~~~p~~~~~l~sg~~--dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l 484 (495)
..+..+. +......++|+|| +.+|+++.. +++|.+||+.+++.+.. +.. . ..+.+.+.|.++..+
T Consensus 92 --~~~~~i~~~~~~~~~g~~p~~i~~spd-g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 92 --TFEKEISLPPKRVQGLNYDGLFRQTTD-GKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSF 166 (361)
T ss_dssp --CEEEEEEECTTBCCBCCCGGGEEECTT-SSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEE
T ss_pred --cEEEEEEcCccccccCCCcceEEECCC-CCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeE
Confidence 2222111 2234678999999 888888764 57999999999988877 542 2 223344455222445
Q ss_pred EEeeCCCcE
Q 048199 485 VSGSDDCKV 493 (495)
Q Consensus 485 ~s~s~D~~v 493 (495)
++.+.||.+
T Consensus 167 ~~~~~dg~~ 175 (361)
T 2oiz_A 167 MTICGDGGL 175 (361)
T ss_dssp EEEETTSSE
T ss_pred EEECCCCcE
Confidence 555555543
No 250
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.10 E-value=8.7e-06 Score=86.07 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=78.3
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCC--------cEEEEEcc-ccccCCCCcCCCee-ecCCCCCeEEEEEcCCCCCEEEEe
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSR--------RIKVFDFA-SVVNEPADVHCPVV-EMPTRSKLSCLSWNKFSKNRIASS 444 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~--------~i~vwd~~-~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~sg 444 (495)
+...+..++|+|||++|+.++.++ .|.+||+. ++. ...... ...+...+..+.|+|| +.+++++
T Consensus 186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-----~~~~~~l~~~~~~~~~~~~~spd-g~l~~~~ 259 (662)
T 3azo_A 186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-----FADTRTLLGGPEEAIAQAEWAPD-GSLIVAT 259 (662)
T ss_dssp CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-----EEEEEEEEEETTBCEEEEEECTT-SCEEEEE
T ss_pred CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-----ccccEEeCCCCCceEcceEECCC-CeEEEEE
Confidence 346788899999999999887654 79999998 330 001111 1234567899999999 6688899
Q ss_pred cCCC--cEEEEeCCCCcceeecccccCc--------EEEEEeecCCCCeEEEeeCCCcEe
Q 048199 445 DYEG--IVTVWDVTTQQSVMEYEEHEKR--------AWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 445 ~~dg--~v~iwd~~~~~~~~~~~~h~~~--------v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+.++ .|.+||..++.......++... +..++|++ ++.++++++. +.++
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~ 317 (662)
T 3azo_A 260 DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAV 317 (662)
T ss_dssp CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCE
T ss_pred CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccE
Confidence 8888 5666666566654444433322 56788998 8999999887 6654
No 251
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.10 E-value=1.3e-05 Score=74.97 Aligned_cols=135 Identities=7% Similarity=-0.004 Sum_probs=96.9
Q ss_pred ccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCC-CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 338 REGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSA-NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 338 ~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
+..++.++.+..+.+|+. ...+.+|.+.. +. ..+.++.+.|+|++|+ +.++.|..||. ++
T Consensus 5 ~~~lv~~~~~~~v~~~d~---~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G-------- 65 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINK---DTKEIVWEYPL-----EKGWECNSVAATKAGEILF--SYSKGAKMITR-DG-------- 65 (276)
T ss_dssp CEEEEECTTCSEEEEEET---TTTEEEEEEEC-----CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS--------
T ss_pred CcEEEeeCCCCEEEEEEC---CCCeEEEEeCC-----CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC--------
Confidence 345667788888999986 23456788773 22 4678999999999998 34788999998 55
Q ss_pred CCeeecC--CCCCeEEEEEcCCCCCEEEEecC-CCcEEEEeCCCCcceeecc------cccCcEEEEEeecCCCCeEEEe
Q 048199 417 CPVVEMP--TRSKLSCLSWNKFSKNRIASSDY-EGIVTVWDVTTQQSVMEYE------EHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 417 ~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~-dg~v~iwd~~~~~~~~~~~------~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
..+-.+. ....+.++.+.++ +.++++.+. ++.|..+|. +|+.+..+. ++......+++.+ +|.+|++.
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~d-G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~ 142 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPD-GNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPL 142 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTT-SCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEE
T ss_pred CEEEEEcCCCCccccccEECCC-CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEe
Confidence 1222221 2246888999999 889998877 788888885 677766654 2223455667788 99999999
Q ss_pred eCCCcEe
Q 048199 488 SDDCKVL 494 (495)
Q Consensus 488 s~D~~v~ 494 (495)
+.++.|.
T Consensus 143 ~~~~~v~ 149 (276)
T 3no2_A 143 FATSEVR 149 (276)
T ss_dssp TTTTEEE
T ss_pred cCCCEEE
Confidence 8888875
No 252
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.10 E-value=1.4e-06 Score=60.24 Aligned_cols=49 Identities=24% Similarity=0.536 Sum_probs=40.3
Q ss_pred CCccccccccchhhhccccCCC--C---ccchhhHHhhhcC--CCCCCCCCCcCcc
Q 048199 50 DKDMLCPICMQIIKEAFLTACG--H---SFCYMCIITHLRN--KSDCPCCGHYLTN 98 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l~CG--H---~FC~~Ci~~~~~~--~~~CP~Cr~~~~~ 98 (495)
++...|.||++...+|.++||. | .|.+.||.+|+.. +..||+|+.++..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3456799999988888888864 4 8999999999975 4689999998754
No 253
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.05 E-value=3.9e-05 Score=79.23 Aligned_cols=137 Identities=13% Similarity=0.072 Sum_probs=93.6
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEcc--ccccCCCCcC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFA--SVVNEPADVH 416 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~--~~~~~~~~~~ 416 (495)
..+++..++.++.++|.. ....+..+..| ..+..+.|+|+|+++++++.|+.|.+||+. +.
T Consensus 168 ~~~V~~~~~~~V~viD~~---t~~v~~~i~~g------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-------- 230 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGS---TYEIKTVLDTG------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-------- 230 (567)
T ss_dssp EEEEEETTTTEEEEEETT---TCCEEEEEECS------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------
T ss_pred eEEEEeCCCCeEEEEECC---CCeEEEEEeCC------CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC--------
Confidence 344555666788888873 33445555542 246689999999999999999999999996 43
Q ss_pred CCeeecCCCCCeEEEEEc----CCCCCEEEEec-CCCcEEEEeCCCCcceeeccc----------ccC-cEEEEEeecCC
Q 048199 417 CPVVEMPTRSKLSCLSWN----KFSKNRIASSD-YEGIVTVWDVTTQQSVMEYEE----------HEK-RAWSVDFSRTE 480 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~----p~~~~~l~sg~-~dg~v~iwd~~~~~~~~~~~~----------h~~-~v~~v~~~~~~ 480 (495)
..+..+........++|+ || +.+++++. .+++|.|||..+.+.+..+.. |.. .+..+.+++.+
T Consensus 231 ~~v~~i~~G~~P~~ia~s~~~~pD-Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 231 TTVAEIKIGSEARSIETSKMEGWE-DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp CEEEEEECCSEEEEEEECCSTTCT-TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred cEeEEEecCCCCceeEEccccCCC-CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 233344344457899999 68 76666655 458999999999888776542 222 67778888733
Q ss_pred CCeEEEeeCCCcE
Q 048199 481 PSMLVSGSDDCKV 493 (495)
Q Consensus 481 g~~l~s~s~D~~v 493 (495)
+.++++...+|.|
T Consensus 310 ~~~vv~~~~~g~v 322 (567)
T 1qks_A 310 PEFIVNVKETGKI 322 (567)
T ss_dssp SEEEEEETTTTEE
T ss_pred CEEEEEecCCCeE
Confidence 4455555555555
No 254
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.02 E-value=1.1e-06 Score=81.46 Aligned_cols=49 Identities=18% Similarity=0.557 Sum_probs=39.6
Q ss_pred CCccccccccchhhh----cc----ccCCCCccchhhHHhhhcCC-----------CCCCCCCCcCcc
Q 048199 50 DKDMLCPICMQIIKE----AF----LTACGHSFCYMCIITHLRNK-----------SDCPCCGHYLTN 98 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~----Pv----~l~CGH~FC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 98 (495)
+....|+||+..+.+ |. ..+|||.|+..||.+|+... +.||.||++++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 455679999999987 42 24799999999999999642 479999998763
No 255
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.00 E-value=5.4e-05 Score=71.15 Aligned_cols=136 Identities=10% Similarity=-0.052 Sum_probs=89.2
Q ss_pred CcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCe
Q 048199 340 GYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPV 419 (495)
Q Consensus 340 ~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 419 (495)
.+..+..+..+..|+... . ...+. .+...+.+++|+|+|+++++...++.|.+||..++... ...
T Consensus 42 l~~~~~~~~~i~~~~~~~--~---~~~~~-----~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~-----~~~ 106 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDG--Q---LSPEM-----HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE-----SIA 106 (296)
T ss_dssp EEEEEGGGTEEEEEETTS--C---EEEEE-----SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE-----EEE
T ss_pred EEEEeCCCCEEEEEECCC--C---eEEEE-----CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE-----EEe
Confidence 355666666677776532 1 22222 35677999999999999888877899999999765100 000
Q ss_pred eec--CCCCCeEEEEEcCCCCCEEEE----ecC-------------CCcEEEEeCCCCcceeecccccCcEEEEEeecCC
Q 048199 420 VEM--PTRSKLSCLSWNKFSKNRIAS----SDY-------------EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTE 480 (495)
Q Consensus 420 ~~~--~~~~~i~~~~~~p~~~~~l~s----g~~-------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 480 (495)
... .....++.++++|+ +.++++ |.. .+.|..||.. +. +..+..+....+.++|+| +
T Consensus 107 ~~~~~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~-d 182 (296)
T 3e5z_A 107 DSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLP-S 182 (296)
T ss_dssp CEETTEECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECT-T
T ss_pred eccCCCCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECC-C
Confidence 000 11234678999999 888887 431 3456566654 43 444555667789999999 9
Q ss_pred CCeEEEeeCCCcEe
Q 048199 481 PSMLVSGSDDCKVL 494 (495)
Q Consensus 481 g~~l~s~s~D~~v~ 494 (495)
+.+|++.+.++.|+
T Consensus 183 g~~lv~~~~~~~i~ 196 (296)
T 3e5z_A 183 GNLLVSDTGDNATH 196 (296)
T ss_dssp SCEEEEETTTTEEE
T ss_pred CCEEEEeCCCCeEE
Confidence 98888877777765
No 256
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=97.97 E-value=2.2e-05 Score=76.77 Aligned_cols=95 Identities=11% Similarity=0.012 Sum_probs=69.4
Q ss_pred EEEccCCCEEEEEeC-CCc--EEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC
Q 048199 382 IEFDRDDQLFATAGV-SRR--IKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT 457 (495)
Q Consensus 382 l~~~p~~~~l~s~s~-d~~--i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~ 457 (495)
.+|+|||++|+.++. ++. |.+||+.++ ...... .+...+..+.|+|| +..|+.++.++.|.+||+.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~spd-g~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--------VATQLTEGRGDNTFGGFLSPD-DDALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--------EEEECCCSSCBCSSSCEECTT-SSEEEEEETTTEEEEEETTT
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--------ceEEeeeCCCCCccceEEcCC-CCEEEEEeCCCeEEEEECCC
Confidence 789999999988887 674 777787775 111111 22233446789999 88999999899999999999
Q ss_pred CcceeecccccCcEEEEEe--ecCCCCeEEE
Q 048199 458 QQSVMEYEEHEKRAWSVDF--SRTEPSMLVS 486 (495)
Q Consensus 458 ~~~~~~~~~h~~~v~~v~~--~~~~g~~l~s 486 (495)
++....+..+...+....| ++ ++.+++.
T Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~ 141 (388)
T 3pe7_A 112 LEENVVYQVPAEWVGYGTWVANS-DCTKLVG 141 (388)
T ss_dssp CCEEEEEECCTTEEEEEEEEECT-TSSEEEE
T ss_pred CcceeeeechhhcccccceeECC-CCCeecc
Confidence 8877766666666654444 77 8888764
No 257
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.94 E-value=8.2e-05 Score=71.08 Aligned_cols=140 Identities=9% Similarity=-0.024 Sum_probs=86.0
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC----CcEEEEEccccccCCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS----RRIKVFDFASVVNEPAD 414 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d----~~i~vwd~~~~~~~~~~ 414 (495)
..+..+..+..+.+|+... .+...+ .. .+...+.+++|+|+++++++...+ +.|.+||..++...
T Consensus 57 ~l~~~~~~~~~i~~~d~~~-~~~~~~--~~-----~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~--- 125 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPET-KEIKRP--FV-----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ--- 125 (333)
T ss_dssp CEEEEETTTCEEEEECTTT-CCEEEE--EE-----CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE---
T ss_pred CEEEEECCCCEEEEEeCCC-CcEEEE--ee-----CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE---
Confidence 3344555556677776531 111111 11 245679999999999988887766 68999998875110
Q ss_pred cCCCeeecCCCCCeEEEEEcCCCCCEEEEecC------CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE-EEe
Q 048199 415 VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY------EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSG 487 (495)
Q Consensus 415 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~ 487 (495)
...........++.+.|+|+ +.++++... .+.|..||..++.. ..+..+...+..++|+| ++.+| ++.
T Consensus 126 --~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~-dg~~l~v~~ 200 (333)
T 2dg1_A 126 --DIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALST-DEKVLWVTE 200 (333)
T ss_dssp --EEECSSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECT-TSSEEEEEE
T ss_pred --EEEccCccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCCCEE-EEeecCCCcccceEECC-CCCEEEEEe
Confidence 00001123456899999999 777777654 35566666654443 33333445678999999 88755 454
Q ss_pred eCCCcEe
Q 048199 488 SDDCKVL 494 (495)
Q Consensus 488 s~D~~v~ 494 (495)
+.++.|.
T Consensus 201 ~~~~~i~ 207 (333)
T 2dg1_A 201 TTANRLH 207 (333)
T ss_dssp GGGTEEE
T ss_pred CCCCeEE
Confidence 5555554
No 258
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=97.93 E-value=3.3e-05 Score=75.46 Aligned_cols=107 Identities=11% Similarity=-0.019 Sum_probs=74.5
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEE--EcCCCCCEEEE--------
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLS--WNKFSKNRIAS-------- 443 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~p~~~~~l~s-------- 443 (495)
+|...+.++.|+|+|+.|+.++.++.|.+||+.++ ........+...+.... ++|+ +.+++.
T Consensus 78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g-------~~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL-------EENVVYQVPAEWVGYGTWVANSD-CTKLVGIEIRREDW 149 (388)
T ss_dssp SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC-------CEEEEEECCTTEEEEEEEEECTT-SSEEEEEEEEGGGC
T ss_pred CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC-------cceeeeechhhcccccceeECCC-CCeeccccccCccc
Confidence 44555556789999999999999999999999986 11111222333343333 4888 777763
Q ss_pred --------------ecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 444 --------------SDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 444 --------------g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
...++.|.+||+.++.. ..+..+...+..++|+|.+|..|+..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~ 208 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHE 208 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEEC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEe
Confidence 23456899999998854 4455677789999999856677776664
No 259
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.90 E-value=9.8e-05 Score=68.07 Aligned_cols=110 Identities=10% Similarity=0.139 Sum_probs=80.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
...+.+++++|+|+++++...++.|.+|+..+.. ...........+.+++++++ +.++++...++.|.+||.
T Consensus 107 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~ 178 (270)
T 1rwi_B 107 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-------QTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEA 178 (270)
T ss_dssp CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-------CEECCCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECT
T ss_pred cCCCcceEECCCCCEEEEECCCCEEEEEECCCce-------eEeeccccCCCceeEEEeCC-CCEEEEECCCCEEEEEec
Confidence 3568999999999988888888999999765431 11111122345788999998 778888877899999998
Q ss_pred CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
...........+...+.++++.+ +|.++++...++.|.
T Consensus 179 ~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~ 216 (270)
T 1rwi_B 179 ESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVV 216 (270)
T ss_dssp TTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEE
T ss_pred CCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEE
Confidence 86654443333446788999999 888888777777664
No 260
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.89 E-value=2.3e-05 Score=84.12 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCCcEEEEEEccCCCEEEEEeCC-----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCc
Q 048199 375 SANIVSSIEFDRDDQLFATAGVS-----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGI 449 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~ 449 (495)
|...+.+++|+|||++|+.++.+ ..|++||+.++ ..+....+...+..++|+|| ..++++. .++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg--------~~~~~~~~~~~~~~~~wspD-~~l~~~~-~~~~ 230 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG--------KPLADELKWVKFSGLAWLGN-DALLYSR-FAEP 230 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC--------CEEEEEEEEEESCCCEESTT-SEEEEEE-CCCC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--------CCCCccCCCceeccEEEECC-CEEEEEE-ecCc
Confidence 44468899999999998877654 46999999987 11111111112357899999 5555544 4443
Q ss_pred --------------EEEEeCCCCcc----eeecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 450 --------------VTVWDVTTQQS----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 450 --------------v~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
|.+|++.++.. +.....|...+.++.|+| ||.+|+..+.++
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~ 289 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEG 289 (741)
T ss_dssp --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECT
T ss_pred ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEcc
Confidence 89999987652 222233444688999999 999888777543
No 261
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.74 E-value=0.00011 Score=71.74 Aligned_cols=99 Identities=11% Similarity=-0.000 Sum_probs=68.0
Q ss_pred cEEEEEEccCCCEEEEEeCC-----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcC-CCCCEEEEec------
Q 048199 378 IVSSIEFDRDDQLFATAGVS-----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNK-FSKNRIASSD------ 445 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~~l~sg~------ 445 (495)
.+..+.|+|+|+.|+.++.+ +.|.+||+.++ ......... ... +.|+| + +.+|++++
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g--------~~~~l~~~~-~~~-~~~s~~d-g~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL--------ENEEVMVMP-PCS-HLMSNFD-GSLMVGDGCDAPVD 307 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC--------CEEEEEECC-SEE-EEEECSS-SSEEEEEECCC---
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCC--------CeEEeeeCC-CCC-CCccCCC-CceEEEecCCccee
Confidence 57889999999987776554 44999999876 111111111 233 89999 8 77777654
Q ss_pred ----------CCCcEEEEeCCCCcceeecccccC-----------cEEEEEeecCCCCeEEEeeC
Q 048199 446 ----------YEGIVTVWDVTTQQSVMEYEEHEK-----------RAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 446 ----------~dg~v~iwd~~~~~~~~~~~~h~~-----------~v~~v~~~~~~g~~l~s~s~ 489 (495)
.++.|.+||+.++.. ..+..|.. .+..++|+| +|..|+.++.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~ 370 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSD 370 (396)
T ss_dssp -------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEEC
T ss_pred eccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEcc-CCCeEEEEec
Confidence 347899999987764 44555544 256788999 9988887765
No 262
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.71 E-value=0.00015 Score=74.93 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=77.1
Q ss_pred EccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC--CCcce
Q 048199 384 FDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT--TQQSV 461 (495)
Q Consensus 384 ~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~--~~~~~ 461 (495)
.+|.+.++++...+++|.+||..++ ..+..+.....+..+.|+|| +.++++++.|+.|.+||+. +++.+
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~--------~v~~~i~~g~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTY--------EIKTVLDTGYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTC--------CEEEEEECSSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCC--------eEEEEEeCCCCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEe
Confidence 3455667788888999999999986 33444444456789999999 8899999999999999996 78877
Q ss_pred eecccccCcEEEEEee----cCCCCeEEEeeC-CCcEe
Q 048199 462 MEYEEHEKRAWSVDFS----RTEPSMLVSGSD-DCKVL 494 (495)
Q Consensus 462 ~~~~~h~~~v~~v~~~----~~~g~~l~s~s~-D~~v~ 494 (495)
..+.... ....++|+ | ||+++++++. ++.|.
T Consensus 234 ~~i~~G~-~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ 269 (567)
T 1qks_A 234 AEIKIGS-EARSIETSKMEGW-EDKYAIAGAYWPPQYV 269 (567)
T ss_dssp EEEECCS-EEEEEEECCSTTC-TTTEEEEEEEETTEEE
T ss_pred EEEecCC-CCceeEEccccCC-CCCEEEEEEccCCeEE
Confidence 7776533 45789999 7 9988887775 35543
No 263
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.70 E-value=0.00025 Score=66.78 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=77.0
Q ss_pred CcEEEEEEccCCCEE-EEEeCCCcEEEEEcc--ccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 377 NIVSSIEFDRDDQLF-ATAGVSRRIKVFDFA--SVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l-~s~s~d~~i~vwd~~--~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.....++|+|+++.| ++.+.++.|.+||++ ++. +.. ......+ .....+..++++++ ++++++...++.|.+
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~--~~~-~~~~~~~~~~~~~p~g~~~d~~-G~lwva~~~~~~v~~ 224 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ--ISN-RRSVYKLEKEEQIPDGMCIDAE-GKLWVACYNGGRVIR 224 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC--EEE-EEEEEECCGGGCEEEEEEEBTT-SCEEEEEETTTEEEE
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc--ccC-cEEEEECCCCCCCCCeeEECCC-CCEEEEEcCCCEEEE
Confidence 446789999999855 566678899999984 320 000 0111111 12346789999999 888888777889999
Q ss_pred EeCCCCcceeecccccCcEEEEEee-cCCCCeEEEee
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFS-RTEPSMLVSGS 488 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~-~~~g~~l~s~s 488 (495)
||..+|+.+..+..+...+++++|. | ++..|+.++
T Consensus 225 ~d~~tG~~~~~i~~p~~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 225 LDPVTGKRLQTVKLPVDKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp ECTTTCCEEEEEECSSSBEEEEEEESG-GGCEEEEEE
T ss_pred EcCCCceEEEEEECCCCCceEEEEeCC-CCCEEEEEc
Confidence 9999999998888777789999998 7 766654443
No 264
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.68 E-value=0.00023 Score=68.19 Aligned_cols=128 Identities=10% Similarity=0.083 Sum_probs=83.7
Q ss_pred hHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCC----------CcEEEEEccccccCCCCcC
Q 048199 347 DFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVS----------RRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 347 d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d----------~~i~vwd~~~~~~~~~~~~ 416 (495)
+.++.++|... ...+..+..+ .....+.++|+|++++++..+ +.|.+||..++
T Consensus 151 ~~~v~viD~~t---~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-------- 213 (328)
T 3dsm_A 151 QNRILKIDTET---DKVVDELTIG------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-------- 213 (328)
T ss_dssp CCEEEEEETTT---TEEEEEEECS------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT--------
T ss_pred CCEEEEEECCC---CeEEEEEEcC------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC--------
Confidence 44566666532 2333344321 234678899999988777655 78999999876
Q ss_pred CCeee--cCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCccee-e-cccccCcEEEEEeecCCCCeEEEe----e
Q 048199 417 CPVVE--MPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVM-E-YEEHEKRAWSVDFSRTEPSMLVSG----S 488 (495)
Q Consensus 417 ~~~~~--~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~-~-~~~h~~~v~~v~~~~~~g~~l~s~----s 488 (495)
..... ......++.++|+|+ +..|+.+.. .|.+||..+++... . +..+....+.++++|.++.++++. .
T Consensus 214 ~v~~~~~~~~g~~p~~la~~~d-~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~ 290 (328)
T 3dsm_A 214 TVEKQFKFKLGDWPSEVQLNGT-RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQ 290 (328)
T ss_dssp EEEEEEECCTTCCCEEEEECTT-SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSS
T ss_pred eEEEEEecCCCCCceeEEEecC-CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccc
Confidence 11112 222346899999999 777777654 89999998877542 2 222246789999998566666776 5
Q ss_pred CCCcEe
Q 048199 489 DDCKVL 494 (495)
Q Consensus 489 ~D~~v~ 494 (495)
.++.|.
T Consensus 291 ~~~~V~ 296 (328)
T 3dsm_A 291 QQGIVY 296 (328)
T ss_dssp SEEEEE
T ss_pred cCCEEE
Confidence 566664
No 265
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.68 E-value=0.0005 Score=64.77 Aligned_cols=112 Identities=10% Similarity=0.134 Sum_probs=78.5
Q ss_pred CcEEEEEEc----cCCCEE-EEEeCCCcEEEEEcc-ccccCCCCcCCCeeecC-CC-CCeEEEEEcCCCCCEEEEecCCC
Q 048199 377 NIVSSIEFD----RDDQLF-ATAGVSRRIKVFDFA-SVVNEPADVHCPVVEMP-TR-SKLSCLSWNKFSKNRIASSDYEG 448 (495)
Q Consensus 377 ~~V~~l~~~----p~~~~l-~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~p~~~~~l~sg~~dg 448 (495)
.....++|+ |+++.+ ++...++.|.+||+. .+. +.. ......+. +. ..+..++++++ +.++++...++
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~--~~~-~~~~~~~~~~~~~~p~~i~~d~~-G~l~v~~~~~~ 247 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK--IEN-KKVWGHIPGTHEGGADGMDFDED-NNLLVANWGSS 247 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE--EEE-EEEEEECCCCSSCEEEEEEEBTT-CCEEEEEETTT
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc--ccc-ceEEEECCCCCCCCCCceEECCC-CCEEEEEcCCC
Confidence 446789999 998654 455668999999986 220 000 00111121 22 55788999999 88888877788
Q ss_pred cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeE-EEeeCCCcE
Q 048199 449 IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDDCKV 493 (495)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~~v 493 (495)
.|.+||..++..+..+..+...+.+++|++ ++..| ++...++.|
T Consensus 248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l 292 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAV 292 (314)
T ss_dssp EEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEE
T ss_pred EEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeE
Confidence 999999988887777777777899999999 88855 444445554
No 266
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.64 E-value=0.00023 Score=66.41 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=73.3
Q ss_pred CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CC-CCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec
Q 048199 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TR-SKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY 464 (495)
Q Consensus 387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~ 464 (495)
.+++|++++.|+.|.+||..++ ..+-.+. +. ..++++.+.|+ +++|++ .++.|..||. +|+.+..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~~~~~~pd-G~ilvs--~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK--------EIVWEYPLEKGWECNSVAATKA-GEILFS--YSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT--------EEEEEEECCTTCCCCEEEECTT-SCEEEE--CBSEEEEECT-TSCEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCC--------eEEEEeCCCccCCCcCeEECCC-CCEEEe--CCCCEEEECC-CCCEEEEE
Confidence 3678999999999999999787 2222222 22 35789999999 888884 4788999998 89999888
Q ss_pred cccc-CcEEEEEeecCCCCeEEEeeC-CCcE
Q 048199 465 EEHE-KRAWSVDFSRTEPSMLVSGSD-DCKV 493 (495)
Q Consensus 465 ~~h~-~~v~~v~~~~~~g~~l~s~s~-D~~v 493 (495)
..+. ..+.++.+.+ +|.++++.+. ++.|
T Consensus 72 ~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v 101 (276)
T 3no2_A 72 AAPAGCEMQTARILP-DGNALVAWCGHPSTI 101 (276)
T ss_dssp ECCTTCEEEEEEECT-TSCEEEEEESTTEEE
T ss_pred cCCCCccccccEECC-CCCEEEEecCCCCEE
Confidence 8653 4788999999 9999999876 5544
No 267
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.60 E-value=0.00019 Score=68.66 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=84.8
Q ss_pred cCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCC
Q 048199 339 EGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 339 ~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
..+.....+..+.+||... .+.+..+. .......++|++++.++++...++.|.+||..++ ..
T Consensus 55 ~lyv~~~~~~~v~viD~~t---~~~~~~i~------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~--------~~ 117 (328)
T 3dsm_A 55 IGWIVVNNSHVIFAIDINT---FKEVGRIT------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY--------EI 117 (328)
T ss_dssp EEEEEEGGGTEEEEEETTT---CCEEEEEE------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT--------EE
T ss_pred EEEEEEcCCCEEEEEECcc---cEEEEEcC------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC--------eE
Confidence 3444445556777887642 23344443 1356889999998866666658999999999886 11
Q ss_pred eeecCCCC------CeEEEEEcCCCCCEEEEec-CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 419 VVEMPTRS------KLSCLSWNKFSKNRIASSD-YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 419 ~~~~~~~~------~i~~~~~~p~~~~~l~sg~-~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
...+.... ....+++ +++.++++.. .++.|.+||..+++.+..+... .....+.+++ +|.+++++..+
T Consensus 118 ~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~-dG~l~v~~~~~ 192 (328)
T 3dsm_A 118 TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDK-YNKMWTITDGG 192 (328)
T ss_dssp EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECT-TSEEEEEBCCB
T ss_pred EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcC-CCCEEEEECCC
Confidence 11111111 4556777 3244444443 4889999999999887777643 3456788999 88877777654
No 268
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.56 E-value=0.0012 Score=61.31 Aligned_cols=109 Identities=7% Similarity=0.072 Sum_probs=79.5
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.+...+.++.++++|+++++...++.|.+||.. + ...... ......+.+++++++ +.++++...++.|..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~-------~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-G-------KITEYPLPTPDAKVMCLTISSD-GEVWFTENAANKIGR 82 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-------CEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C-------CeEEecCCcccCceeeEEECCC-CCEEEeCCCCCeEEE
Confidence 345679999999999988887778999999987 4 111111 123457899999998 888888777889999
Q ss_pred EeCCCCcceeec--ccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 453 WDVTTQQSVMEY--EEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 453 wd~~~~~~~~~~--~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
||.. +.. ..+ ..+...+.++++.+ +|.++++...++.|.
T Consensus 83 ~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~ 123 (299)
T 2z2n_A 83 ITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIG 123 (299)
T ss_dssp ECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEE
T ss_pred ECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEE
Confidence 9976 432 222 22455789999999 888888776666553
No 269
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.54 E-value=0.00044 Score=73.72 Aligned_cols=111 Identities=10% Similarity=-0.087 Sum_probs=75.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeC-----CCcEEEEEccc------cccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEE
Q 048199 375 SANIVSSIEFDRDDQLFATAGV-----SRRIKVFDFAS------VVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIAS 443 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~-----d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~s 443 (495)
|...+.++.|+|+|++|+.++. +..|.+||+.+ +.. .......+...+.. .|+|+ +..|+.
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~l~~~~~~~~~-~~s~d-g~~l~~ 302 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL------KWVKLIDNFEGEYD-YVTNE-GTVFTF 302 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC------CCEEEECSSSSCEE-EEEEE-TTEEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc------ceEEeeCCCCcEEE-EEecc-CCEEEE
Confidence 4566889999999998887765 56899999986 300 12222234444444 48888 555554
Q ss_pred ecC-C---CcEEEEeCCCCc--ceeecccccC--cEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 444 SDY-E---GIVTVWDVTTQQ--SVMEYEEHEK--RAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 444 g~~-d---g~v~iwd~~~~~--~~~~~~~h~~--~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+. + +.|.+||+.++. ....+..|.. .+.+++|++ ++.++++...|+..+
T Consensus 303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNT 360 (710)
T ss_dssp EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEE
T ss_pred EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEE
Confidence 433 2 369999998764 3455555644 788899997 778889988888654
No 270
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.54 E-value=3.4e-05 Score=75.44 Aligned_cols=87 Identities=14% Similarity=0.023 Sum_probs=59.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeCC---CcEEEEEccccccCCCCcCCCeeecCCCCC-eEEEEEcCCCCCEEEEecCCCcE
Q 048199 375 SANIVSSIEFDRDDQLFATAGVS---RRIKVFDFASVVNEPADVHCPVVEMPTRSK-LSCLSWNKFSKNRIASSDYEGIV 450 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~p~~~~~l~sg~~dg~v 450 (495)
|...+.+++|+|+|++|+..... ..|.+||+.++ .......+... ...+.|+|| +..|+.++.++.|
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--------~~~~l~~~~~~~~~~~~~spd-g~~l~~~~~~~~l 104 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--------QAVQLTEGKGDNTFGGFISTD-ERAFFYVKNELNL 104 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--------EEEECCCSSCBCTTTCEECTT-SSEEEEEETTTEE
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC--------cEEEeecCCCCccccceECCC-CCEEEEEEcCCcE
Confidence 34447788999999988776543 46788888775 11111122222 223789999 8899888888899
Q ss_pred EEEeCCCCcceeecccccCc
Q 048199 451 TVWDVTTQQSVMEYEEHEKR 470 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~h~~~ 470 (495)
.+||+.++.....+..+..+
T Consensus 105 ~~~d~~~~~~~~~~~~~~~~ 124 (396)
T 3c5m_A 105 MKVDLETLEEQVIYTVDEEW 124 (396)
T ss_dssp EEEETTTCCEEEEEECCTTE
T ss_pred EEEECCCCCcEEEEeccccc
Confidence 99999988766555544443
No 271
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.54 E-value=0.00014 Score=77.33 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=69.2
Q ss_pred cCCCcEEEEEEccCCCEEEEE-----eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC
Q 048199 374 HSANIVSSIEFDRDDQLFATA-----GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG 448 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~-----s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg 448 (495)
+|...+.+++|+|||++|+.+ +...+|++||+.++ ..+.......+...++|+ | +..|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg--------~~~~~~~~~~k~~~~~Ws-D-g~~l~y~~~~~ 195 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK--------QPLETPLKDVKFSGISWL-G-NEGFFYSSYDK 195 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC--------SEEEEEEEEEESCCCEEE-T-TTEEEEEESSC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC--------CCCccccCCceeccEEEe-C-CCEEEEEEecC
Confidence 355678899999999988842 33367999999987 111111111113567899 8 77777776664
Q ss_pred -------------cEEEEeCCCCcc----eeeccc-ccCcEEEEEeecCCCCeEEEe
Q 048199 449 -------------IVTVWDVTTQQS----VMEYEE-HEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 449 -------------~v~iwd~~~~~~----~~~~~~-h~~~v~~v~~~~~~g~~l~s~ 487 (495)
.|.+|++.++.. +..... |...+.++.|+| ||.+|+..
T Consensus 196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~ 251 (693)
T 3iuj_A 196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLIS 251 (693)
T ss_dssp CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEE
T ss_pred cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEE
Confidence 399999987643 333344 556678899999 99877543
No 272
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.50 E-value=0.00089 Score=64.40 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=77.1
Q ss_pred cCCCcEEEEEEccCCCEEEEEeC-----CCcEEEEEccccccCCCCcCCCeeec-----CCCCCeEEEEEcCCCCCEEEE
Q 048199 374 HSANIVSSIEFDRDDQLFATAGV-----SRRIKVFDFASVVNEPADVHCPVVEM-----PTRSKLSCLSWNKFSKNRIAS 443 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~l~s 443 (495)
+|...+.+++|+++++++++... +..|.+||+.++.. .....+ .+...++.++++++++..+++
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~------~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt 137 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL------SRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS 137 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE------EEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE------EEEEECChhhcccccccceEEEecCCCEEEEE
Confidence 46678999999999987776544 67899999987610 000111 123456899999874555566
Q ss_pred ec---CCCcEEEEeCCCCcceeeccccc-----------------------------CcEEEEEeecCCCCeEEEeeCCC
Q 048199 444 SD---YEGIVTVWDVTTQQSVMEYEEHE-----------------------------KRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 444 g~---~dg~v~iwd~~~~~~~~~~~~h~-----------------------------~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
.. .++.|.+||..++.....+.+|. ..++.++|+| +|.+|+.+..++
T Consensus 138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~ 216 (343)
T 2qe8_A 138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHS 216 (343)
T ss_dssp ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSC
T ss_pred cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCC
Confidence 55 67899999998877655554321 2368899999 998888776654
No 273
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.47 E-value=0.0005 Score=65.86 Aligned_cols=95 Identities=14% Similarity=0.030 Sum_probs=66.8
Q ss_pred CcEEEEEEccCCCEEEEEe---------CCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC
Q 048199 377 NIVSSIEFDRDDQLFATAG---------VSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE 447 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d 447 (495)
..+....| +|+.++... .+..|.+||+.++ .. ..+ ..+..+.|+|| +..|+..+.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~--------~~-~~l---~~~~~~~~SpD-g~~la~~~~~ 79 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN--------AR-RFI---ENATMPRISPD-GKKIAFMRAN 79 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC--------CE-EEE---ESCEEEEECTT-SSEEEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC--------ce-EEc---ccCCCeEECCC-CCEEEEEEec
Confidence 34667777 787766542 3667999999876 11 112 45788999999 8777776643
Q ss_pred ---C--cEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 448 ---G--IVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 448 ---g--~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
+ .|.+||+.+++.......+ . +..++|+| ||..|+.++.
T Consensus 80 ~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~ 123 (347)
T 2gop_A 80 EEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGF 123 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEE
T ss_pred cCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEc
Confidence 3 3888898877665544433 3 99999999 9998888764
No 274
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.42 E-value=0.0022 Score=59.55 Aligned_cols=110 Identities=6% Similarity=-0.110 Sum_probs=78.7
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
+...+.++.+++++.++++...++.|.+||. ++. ............+..++++++ +.++++...++.|.+||
T Consensus 97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~------~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK------IREYELPNKGSYPSFITLGSD-NALWFTENQNNAIGRIT 168 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC------EEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEEC
T ss_pred cCCCceeeEECCCCCEEEEecCCceEEEECC-CCC------EEEecCCCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEc
Confidence 3457899999999998888877889999998 430 011111123456899999999 78888877788999999
Q ss_pred CCCCcceee-cccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 455 VTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 455 ~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
. ++..... +..+...+.++++.+ +|.++++...++.|.
T Consensus 169 ~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 169 E-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIG 207 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEE
T ss_pred C-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEE
Confidence 8 6654432 333445688999999 888777766566553
No 275
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.42 E-value=0.00063 Score=72.31 Aligned_cols=110 Identities=8% Similarity=-0.118 Sum_probs=72.2
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCC----cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec---C
Q 048199 374 HSANIVSSIEFDRDDQLFATAGVSR----RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD---Y 446 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~~l~s~s~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~---~ 446 (495)
.|...+.++.|+|+|++|+.++.++ .|.+|+..++ .......+...+....| ++++ +++++. .
T Consensus 224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--------~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~ 293 (695)
T 2bkl_A 224 GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--------DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAP 293 (695)
T ss_dssp CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS--------SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCT
T ss_pred CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC--------ceEEeecCCCceEEEEe-cCCc-EEEEECCCCC
Confidence 3556889999999999888777665 4555554332 22222334445566667 4535 666555 3
Q ss_pred CCcEEEEeCCCCcc--eeecccc--cCcEEEEEeecCCCCeEEEeeCCCcEeC
Q 048199 447 EGIVTVWDVTTQQS--VMEYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKVLY 495 (495)
Q Consensus 447 dg~v~iwd~~~~~~--~~~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v~l 495 (495)
++.|.+||+.++.. ...+..| ...+.+++|+ ++.++++...|+..+|
T Consensus 294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 294 RQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEV 344 (695)
T ss_dssp TCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEE
Confidence 57899999987653 2344333 4568888887 5678888888887653
No 276
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.35 E-value=0.0008 Score=66.55 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=74.5
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCC--cEEEEe
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEG--IVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg--~v~iwd 454 (495)
.....|+|+++++++++...++.|++||..++ ............. ++|+++ +..|+.++.++ .|.+||
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--------~~~~~~~~~~~~~-ia~~~~-g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--------KVTTVHPGFKGGK-PAVTKD-KQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--------EEEEEEETCCBCB-CEECTT-SSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--------EEEEeeccCCCCc-eeEecC-CCcEEEEecCCCceEEEEE
Confidence 46889999999998888888899999999875 1111111222334 999999 77888888766 799999
Q ss_pred CCCCcceeec----ccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 455 VTTQQSVMEY----EEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 455 ~~~~~~~~~~----~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
...+.....+ ..+...+++++++| ++..|+.+..++.|+
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~ 243 (409)
T 3hrp_A 201 KASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFG 243 (409)
T ss_dssp GGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEE
T ss_pred cCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEE
Confidence 8765543333 22456678899998 444555565666654
No 277
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.34 E-value=5.8e-05 Score=58.61 Aligned_cols=33 Identities=27% Similarity=0.654 Sum_probs=28.4
Q ss_pred Cccccccccch-hhhccc--cCCCCccchhhHHhhh
Q 048199 51 KDMLCPICMQI-IKEAFL--TACGHSFCYMCIITHL 83 (495)
Q Consensus 51 ~~l~C~IC~~~-~~~Pv~--l~CGH~FC~~Ci~~~~ 83 (495)
+++.|+||.+. +.+|+. +.|||+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 46889999975 788887 8999999999999833
No 278
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.32 E-value=0.0022 Score=63.40 Aligned_cols=111 Identities=5% Similarity=-0.050 Sum_probs=77.3
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcC-CC-----eeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEE
Q 048199 381 SIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVH-CP-----VVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTV 452 (495)
Q Consensus 381 ~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~-----~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~i 452 (495)
.++|+| ++.++++...++.|+.|+.+.....+.+.. .. ............++|+|+ +.++++-. .++.|+.
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~ 349 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRK 349 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEE
Confidence 999999 577777778889999999875311100000 00 000011235789999999 88888887 8999999
Q ss_pred EeCCCCcceeecccc---------------cCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 453 WDVTTQQSVMEYEEH---------------EKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 453 wd~~~~~~~~~~~~h---------------~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
||..++. +.++.++ -...+.|++++ +|.++++...+++|+
T Consensus 350 ~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 350 LDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIR 404 (409)
T ss_dssp EETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEE
T ss_pred EECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEE
Confidence 9987665 4444444 24688999999 888888888888876
No 279
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.29 E-value=0.0046 Score=58.89 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=74.0
Q ss_pred CcEEEEEEccCCCEEE-EEeCCCcEEEEEcc--ccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 377 NIVSSIEFDRDDQLFA-TAGVSRRIKVFDFA--SVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~-s~s~d~~i~vwd~~--~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.....++|+|+++.++ +.+.++.|.+||+. ++.. +.. ......+ .....+..+.++++ +.++++...++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~-~~~-~~~~~~~~~~~~~p~gi~~d~~-G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP-TGK-AEVFIDSTGIKGGMDGSVCDAE-GHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB-SSC-CEEEEECTTSSSEEEEEEECTT-SCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCc-ccC-ceEEEECCCCCCCCCeeEECCC-CCEEEEEeCCCEEEE
Confidence 3567899999998654 55567899999986 3200 000 0111111 12345788999999 777777766789999
Q ss_pred EeCCCCcceeecccccCcEEEEEee-cCCCCeEE-EeeCC
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFS-RTEPSMLV-SGSDD 490 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~-~~~g~~l~-s~s~D 490 (495)
||. ++..+..+..+...+.+++|. + ++..|+ +...+
T Consensus 256 ~d~-~g~~~~~i~~~~~~~~~~af~g~-d~~~L~vt~~~~ 293 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGKQTTCPAFIGP-DASRLLVTSARE 293 (326)
T ss_dssp ECT-TCCEEEEEECSCSBEEEEEEEST-TSCEEEEEEBCT
T ss_pred ECC-CCCEEEEEECCCCCcEEEEEecC-CCCEEEEEecCC
Confidence 998 577777777777789999998 7 766654 44443
No 280
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.27 E-value=0.0012 Score=62.02 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=72.2
Q ss_pred CcEEEEEEccCCCEEEEEeCC---------------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEc----CCC
Q 048199 377 NIVSSIEFDRDDQLFATAGVS---------------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWN----KFS 437 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d---------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----p~~ 437 (495)
..+.+++++++|+++++...+ +.|..||.. + .......+......++|+ |+
T Consensus 117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g--------~~~~~~~~~~~~~~i~~~~~~d~d- 186 (314)
T 1pjx_A 117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G--------QMIQVDTAFQFPNGIAVRHMNDGR- 186 (314)
T ss_dssp BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S--------CEEEEEEEESSEEEEEEEECTTSC-
T ss_pred cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C--------CEEEeccCCCCcceEEEecccCCC-
Confidence 458899999999988877655 455555544 2 111112223456889999 99
Q ss_pred CC-EEEEecCCCcEEEEeCC-CCc-----ceeeccccc-CcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 438 KN-RIASSDYEGIVTVWDVT-TQQ-----SVMEYEEHE-KRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 438 ~~-~l~sg~~dg~v~iwd~~-~~~-----~~~~~~~h~-~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+. ++++...++.|.+||.. ++. ....+.++. ..+..+++.+ +|.++++...++.|.
T Consensus 187 g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 187 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIE 250 (314)
T ss_dssp EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEE
T ss_pred CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEE
Confidence 64 45555678899999976 443 233444444 6688999999 998888877666654
No 281
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.25 E-value=0.00087 Score=65.19 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=68.1
Q ss_pred HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEccccccCCCCcCCC
Q 048199 349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG----------VSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s----------~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
.+.+.|. ...+.+..+..| ..+ .+.++|+|++++.++ .+.+|.+||..+. ..
T Consensus 60 ~V~ViD~---~t~~v~~~I~vG-----~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--------~v 121 (386)
T 3sjl_D 60 QQFVIDG---EAGRVIGMIDGG-----FLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--------LP 121 (386)
T ss_dssp EEEEEET---TTTEEEEEEEEC-----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------CE
T ss_pred EEEEEEC---CCCeEEEEEECC-----CCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------eE
Confidence 5556555 344556666643 223 499999999877665 3678999999986 22
Q ss_pred eeec--CC------CCCeEEEEEcCCCCCEEEEecC--CCcEEEEeCCCCcceeecc
Q 048199 419 VVEM--PT------RSKLSCLSWNKFSKNRIASSDY--EGIVTVWDVTTQQSVMEYE 465 (495)
Q Consensus 419 ~~~~--~~------~~~i~~~~~~p~~~~~l~sg~~--dg~v~iwd~~~~~~~~~~~ 465 (495)
+..+ .. ......+.|+|| +.+++.+.. ++.|.++|+.+++.+.++.
T Consensus 122 ~~~I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~~vv~tI~ 177 (386)
T 3sjl_D 122 TADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 177 (386)
T ss_dssp EEEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCccccccCCCCceEEEcCC-CCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 2222 11 124667999999 787777753 6899999999999888875
No 282
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.17 E-value=0.0043 Score=60.44 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=65.0
Q ss_pred HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEccccccCCCCcCCC
Q 048199 349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG----------VSRRIKVFDFASVVNEPADVHCP 418 (495)
Q Consensus 349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s----------~d~~i~vwd~~~~~~~~~~~~~~ 418 (495)
++.++|.. ..+.+..+..| ..+ .+.|+|||+.++.+. .+.+|.+||..+. ..
T Consensus 48 ~v~v~D~~---t~~~~~~i~~g-----~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--------~~ 109 (373)
T 2mad_H 48 QQWVLDAG---SGSILGHVNGG-----FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--------LP 109 (373)
T ss_pred EEEEEECC---CCeEEEEecCC-----CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--------cE
Confidence 45566652 33445555532 223 899999999888775 3678999999875 11
Q ss_pred eeec--C------CCCCeEEEEEcCCCCCEEEEecC--CCcEEEEeCCCCcceee-cc
Q 048199 419 VVEM--P------TRSKLSCLSWNKFSKNRIASSDY--EGIVTVWDVTTQQSVME-YE 465 (495)
Q Consensus 419 ~~~~--~------~~~~i~~~~~~p~~~~~l~sg~~--dg~v~iwd~~~~~~~~~-~~ 465 (495)
+..+ . .......+.|+|| +.+|+.+.. ++.|.++| .+++.+.. +.
T Consensus 110 ~~~i~~~~~~~~~~g~~p~~~~~spD-G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~ 165 (373)
T 2mad_H 110 IADIELPDAPRFDVGPYSWMNANTPN-NADLLFFQFAAGPAVGLVV-QGGSSDDQLLS 165 (373)
T ss_pred EEEEECCCccccccCCCccceEECCC-CCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence 1111 1 1123568999999 888887764 57899999 99988877 54
No 283
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.15 E-value=0.0092 Score=55.25 Aligned_cols=109 Identities=8% Similarity=0.069 Sum_probs=79.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
....+.++.++++|+++++...++.|.+||.. +. ...... .....+.+++++++ +.++++...++.|..|
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~ 88 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------IKEFEVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKL 88 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------eEEEECCCCCCcceeEEECCC-CCEEEEecCCCeEEEE
Confidence 35678999999999998888788999999987 41 111111 22356899999998 7888887778899999
Q ss_pred eCCCCcce-eecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 454 DVTTQQSV-MEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 454 d~~~~~~~-~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
|.. +... ..+......+.++++.+ +|.++++...++.|.
T Consensus 89 d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~ 128 (300)
T 2qc5_A 89 SKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIG 128 (300)
T ss_dssp CTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEE
T ss_pred CCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEE
Confidence 987 5542 12222346788999998 888888776566553
No 284
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.13 E-value=0.0043 Score=58.14 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=71.7
Q ss_pred CcEEEEEEccCCCEEEEEeCC---------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEecC
Q 048199 377 NIVSSIEFDRDDQLFATAGVS---------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSDY 446 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~ 446 (495)
..+.++.++|+|+++++...+ ..-.||.+... .............+.++|+|+ +. ++++.+.
T Consensus 98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-------g~~~~~~~~~~~pngi~~spd-g~~lyv~~~~ 169 (297)
T 3g4e_A 98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-------HHVKKYFDQVDISNGLDWSLD-HKIFYYIDSL 169 (297)
T ss_dssp EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-------SCEEEEEEEESBEEEEEECTT-SCEEEEEEGG
T ss_pred CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-------CCEEEEeeccccccceEEcCC-CCEEEEecCC
Confidence 457899999999977765332 34567766543 011111222345689999999 65 4566777
Q ss_pred CCcEEEEeC--CCCcc-----eeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 447 EGIVTVWDV--TTQQS-----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 447 dg~v~iwd~--~~~~~-----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
++.|.+||+ .+|.. +..+..+...+..+++.+ +|.+.++...++.|.
T Consensus 170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~ 223 (297)
T 3g4e_A 170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVI 223 (297)
T ss_dssp GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEE
T ss_pred CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEE
Confidence 889999997 44532 233444456788999999 888877776666553
No 285
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.09 E-value=0.0026 Score=59.93 Aligned_cols=107 Identities=13% Similarity=0.067 Sum_probs=71.4
Q ss_pred cEEEEEEccCCCEEEEEeCC------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 378 IVSSIEFDRDDQLFATAGVS------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
....++|+|+++.|+.+... +.|.+|++.... +. ...+......+.+..+.++++ ++++++ ..+ .|.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~--~~~~~~~~~~~~pdgi~~d~~-G~lwv~-~~~-gv~ 261 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LH--DRRHFASVPDGLPDGFCVDRG-GWLWSS-SGT-GVC 261 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EE--EEEEEECCSSSCCCSEEECTT-SCEEEC-CSS-EEE
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--cc--CCeEEEECCCCCCCeEEECCC-CCEEEe-cCC-cEE
Confidence 45789999999977666554 789999987541 00 000111112234567889998 775544 444 499
Q ss_pred EEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 452 VWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 452 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+||. .+..+..+..+. .+.+++|.+ ++..|+.++.++..+
T Consensus 262 ~~~~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 262 VFDS-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCLWM 301 (305)
T ss_dssp EECT-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTEEEE
T ss_pred EECC-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeEEE
Confidence 9997 577777776555 588999998 888887777776544
No 286
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.07 E-value=2.1e-05 Score=76.83 Aligned_cols=136 Identities=10% Similarity=0.007 Sum_probs=60.5
Q ss_pred cccCcccchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcC
Q 048199 337 HREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVH 416 (495)
Q Consensus 337 ~~~~~~~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 416 (495)
.+..+..|+.|+.+..|+.. ..+.+|.+.. +.+.+..+..++.++++++.|+.|..||..++..... ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~---tG~~~W~~~~-------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~-~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKR---TGSIKWTLKE-------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK-LP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETT---TCCEEEEEEC-------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEE-CS
T ss_pred eCCEEEEEcCCCEEEEEECC---CCCEEEEecC-------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeee-ee
Confidence 34455667777788888863 3455676653 2333444556777888888999999999987621100 00
Q ss_pred CCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 417 CPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 417 ~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
..........++ +. + +..+++|+.|+.|..||..+|+.+..+..+. .+.++| ++..+++++.|+.|+
T Consensus 77 ~~~~~~~~~sp~----~~-~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 77 FTIPELVQASPC----RS-S-DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSP-STSLLYLGRTEYTIT 143 (369)
T ss_dssp CCHHHHHTTCSC----C-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEE
T ss_pred ccCccccccCce----Ee-c-CCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccc-cCCEEEEEecCCEEE
Confidence 000000011111 11 2 4467888889999999999999888777554 234567 777888888887765
No 287
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.05 E-value=0.0097 Score=55.10 Aligned_cols=110 Identities=6% Similarity=-0.045 Sum_probs=76.9
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
....+.++.++++++++++...++.|..||..... ...........+..+.++++ +.++++...++.|.+||
T Consensus 144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~-------~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 144 KGSYPAFITLGSDNALWFTENQNNSIGRITNTGKL-------EEYPLPTNAAAPVGITSGND-GALWFVEIMGNKIGRIT 215 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE-------EEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEEC
T ss_pred CCCCceeEEECCCCCEEEEecCCCeEEEECCCCcE-------EEeeCCCCCCCcceEEECCC-CCEEEEccCCCEEEEEc
Confidence 34578999999999988777778889999983220 01111123356889999998 78877777778899999
Q ss_pred CCCCcceee-cccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 455 VTTQQSVME-YEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 455 ~~~~~~~~~-~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
. ++..... +..+...+.++++.+ +|.++++...++.|.
T Consensus 216 ~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~ 254 (300)
T 2qc5_A 216 T-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIG 254 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEE
T ss_pred C-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEE
Confidence 8 4543322 333456788999999 888777765556553
No 288
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.99 E-value=0.0056 Score=56.24 Aligned_cols=105 Identities=10% Similarity=0.181 Sum_probs=67.6
Q ss_pred CcEEEEEEccCCCEEEEEeC--CCcEEEEEccccccCCCCcCCCeeec--CCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 377 NIVSSIEFDRDDQLFATAGV--SRRIKVFDFASVVNEPADVHCPVVEM--PTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.....+.|+|++.++++.+. +++|+++|+.++ ..+..+ ......-.++++. +.++++.-.++.+.+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--------~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG--------KVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFI 90 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC--------CEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC--------CEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEE
Confidence 45689999998777766664 689999999987 222222 1222233455552 345556667889999
Q ss_pred EeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 453 WDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 453 wd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+|..+++.+.++..-...-+. +++ ||..|+.+..++.|.
T Consensus 91 iD~~t~~v~~~i~~g~~~g~g--lt~-Dg~~l~vs~gs~~l~ 129 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQMKDGWG--LAT-DGKILYGSDGTSILY 129 (266)
T ss_dssp EETTTTEEEEEEECCSSSCCE--EEE-CSSSEEEECSSSEEE
T ss_pred EECCCCcEEEEEECCCCCeEE--EEE-CCCEEEEECCCCeEE
Confidence 999999988888532122233 455 666666655666664
No 289
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=96.99 E-value=0.0014 Score=63.72 Aligned_cols=101 Identities=13% Similarity=-0.036 Sum_probs=70.3
Q ss_pred EEccCCCEEEEEeC-----CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec----------CC
Q 048199 383 EFDRDDQLFATAGV-----SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD----------YE 447 (495)
Q Consensus 383 ~~~p~~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~----------~d 447 (495)
...|+++.++.... +++|.++|..+. ..+..+....... +.++|| +.+++.++ .+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--------~v~~~I~vG~~P~-va~spD-G~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGFLPN-PVVADD-GSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECSSCE-EEECTT-SSCEEEEEEEEEETTEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCC--------eEEEEEECCCCCc-EEECCC-CCEEEEEcccccccccCCCC
Confidence 45688887766654 679999999886 3333332222234 999999 76666654 36
Q ss_pred CcEEEEeCCCCcceeecccc-------cCcEEEEEeecCCCCeEEEeeC--CCcEe
Q 048199 448 GIVTVWDVTTQQSVMEYEEH-------EKRAWSVDFSRTEPSMLVSGSD--DCKVL 494 (495)
Q Consensus 448 g~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~~l~s~s~--D~~v~ 494 (495)
+.|.+||..+++.+..+.-. ....+.++|+| ||.+|+.+.. ++.|.
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~Vs 163 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVG 163 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEE
Confidence 78999999999988877421 12456799999 9998887764 56654
No 290
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.96 E-value=0.0083 Score=57.06 Aligned_cols=108 Identities=6% Similarity=-0.104 Sum_probs=68.0
Q ss_pred CcEEEEEEccCCCEEEEEeCC----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEE-EEecCCCcEE
Q 048199 377 NIVSSIEFDRDDQLFATAGVS----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRI-ASSDYEGIVT 451 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~sg~~dg~v~ 451 (495)
..+.++.++|+|+++++...+ ....||.++.+ ............+.++|+|+ +..| ++.+.++.|.
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g--------~~~~~~~~~~~~~~i~~s~d-g~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG--------KVTKLFADISIPNSICFSPD-GTTGYFVDTKVNRLM 204 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT--------EEEEEEEEESSEEEEEECTT-SCEEEEEETTTCEEE
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC--------cEEEeeCCCcccCCeEEcCC-CCEEEEEECCCCEEE
Confidence 468899999999977765422 23455555433 11111122234679999999 6654 5556678999
Q ss_pred EEeCC--CC-cc-----eeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 452 VWDVT--TQ-QS-----VMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 452 iwd~~--~~-~~-----~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+||+. ++ .. +..+......+.++++.+ +|.++++...++.|.
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVD 254 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEE
T ss_pred EEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEE
Confidence 99986 55 32 223333445678899998 888777765555553
No 291
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.93 E-value=0.0033 Score=60.35 Aligned_cols=111 Identities=11% Similarity=0.101 Sum_probs=72.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEcccc--cc-CCCC--cCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 378 IVSSIEFDRDDQLFATAGVSRRIKVFDFASV--VN-EPAD--VHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~--~~-~~~~--~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
.+..|+|+|+++.|+.+..++. ++|.+... .. .+.. ....+...++.+....++++++ +.++++...++.|.+
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~ 273 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD-HNIYVGDLAHSAIGV 273 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT-CCEEEEEGGGTEEEE
T ss_pred ccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC-CCEEEEccCCCeEEE
Confidence 4688999999998888776664 55655432 00 0000 0001111223335667899999 899999999999999
Q ss_pred EeCCCCcceeeccc-ccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 453 WDVTTQQSVMEYEE-HEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 453 wd~~~~~~~~~~~~-h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
||..+++....... +-..+.+++|.+ ++.++++.+..+
T Consensus 274 ~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~~ 312 (343)
T 2qe8_A 274 ITSADRAYKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQLH 312 (343)
T ss_dssp EETTTTEEEEEEECGGGSCEEEEEECT-TSCEEEEECCGG
T ss_pred EECCCCCEEEEEECCceecCCeeEECC-CCcEEEEeCccc
Confidence 99855653222221 245689999999 888888877543
No 292
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=96.84 E-value=0.0075 Score=58.68 Aligned_cols=100 Identities=13% Similarity=-0.075 Sum_probs=67.2
Q ss_pred EccCCCEEEEEeC--CC---cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec----------CCC
Q 048199 384 FDRDDQLFATAGV--SR---RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD----------YEG 448 (495)
Q Consensus 384 ~~p~~~~l~s~s~--d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~----------~dg 448 (495)
..|+++.++.... .. +|.+||..++ ..+..+...... .+.|+|| +..++.+. .++
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~--------~~~~~i~~g~~p-~i~~spD-g~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP-NPVAAHS-GSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCC--------eEEEEecCCCCC-CeEECCC-CCEEEEEeccccccccCCCCC
Confidence 3467776555543 22 8899999886 223333322333 8999999 77777765 367
Q ss_pred cEEEEeCCCCcceeecccc-------cCcEEEEEeecCCCCeEEEeeC--CCcEe
Q 048199 449 IVTVWDVTTQQSVMEYEEH-------EKRAWSVDFSRTEPSMLVSGSD--DCKVL 494 (495)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~~l~s~s~--D~~v~ 494 (495)
.|.+||..+++.+..+.-- ......++|+| ||++|+.++. ++.|.
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~ 151 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVG 151 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEE
Confidence 8999999988877765321 12345899999 9999988874 35453
No 293
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.83 E-value=0.0082 Score=56.40 Aligned_cols=108 Identities=9% Similarity=-0.090 Sum_probs=70.7
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEE----ecC----
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIAS----SDY---- 446 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~s----g~~---- 446 (495)
+...+.++.|+++|+++++...++.|.+|+.......+. ..........++.+.++++ +.+++| |..
T Consensus 84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~----~~~~~~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~ 158 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLV----GRYAGKRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQ 158 (305)
T ss_dssp SCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE----CEETTEECSCCCCEEECTT-SCEEEECCSGGGSCGGG
T ss_pred CCCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEE----eccCCCccCCCCCEEECCC-CCEEEeCcCCCcccccc
Confidence 456789999999999887766678899999762210000 0000001234678999999 888886 442
Q ss_pred ---------CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 447 ---------EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 447 ---------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
.+.|..||..++...... +....+.++|+| ++..|+.+..+
T Consensus 159 ~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~sp-dg~~lyv~~~~ 208 (305)
T 3dr2_A 159 GCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSP-DEQTLYVSQTP 208 (305)
T ss_dssp SCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECT-TSSEEEEEECC
T ss_pred ccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcC-CCCEEEEEecC
Confidence 256788887666544333 445678899999 98877666544
No 294
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.72 E-value=0.00067 Score=61.08 Aligned_cols=47 Identities=21% Similarity=0.665 Sum_probs=38.9
Q ss_pred ccccccccchhhhcccc-CCCCccchhhHHhhhcCC--CCCCCCCCcCcc
Q 048199 52 DMLCPICMQIIKEAFLT-ACGHSFCYMCIITHLRNK--SDCPCCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l-~CGH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~ 98 (495)
...|.||.++...-+.. .|+|.|+..|+.+|+... ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 45699999999966544 499999999999999765 499999987543
No 295
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.67 E-value=0.011 Score=53.82 Aligned_cols=106 Identities=9% Similarity=0.239 Sum_probs=66.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCC--cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSR--RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
......|.|+ ++.++.+.+.++ .|+++|+.++ .......-...+......++++.+++..-.++.+.+|
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg--------kv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESG--------KTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTC--------CEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCC--------cEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 5667899999 678888888876 8999999987 2222222223333322233323344444468899999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
|..+++.+.++..-. .-+.++ + ++..|+.+..++.|.
T Consensus 113 D~~t~~~~~ti~~~~-eG~glt--~-dg~~L~~SdGs~~i~ 149 (262)
T 3nol_A 113 NIRNLRQVRSFNYDG-EGWGLT--H-NDQYLIMSDGTPVLR 149 (262)
T ss_dssp ETTTCCEEEEEECSS-CCCCEE--E-CSSCEEECCSSSEEE
T ss_pred ECccCcEEEEEECCC-CceEEe--c-CCCEEEEECCCCeEE
Confidence 999999998887422 224454 4 556665555455554
No 296
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.61 E-value=0.021 Score=52.01 Aligned_cols=103 Identities=14% Similarity=0.215 Sum_probs=69.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeE--EEEEcCCCCCEEEEecCCCcEEEE
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLS--CLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
......|.|+ ++.++.+.+.++.|+++|+.++ ...... -...+. .+++.. +.++...-.++.+.+|
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tg--------kv~~~~-l~~~~FgeGit~~g--~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESA--------QPVWME-RLGNIFAEGLASDG--ERLYQLTWTEGLLFTW 121 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCS--------SCSEEE-ECTTCCEEEEEECS--SCEEEEESSSCEEEEE
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCC--------cEEeEE-CCCCcceeEEEEeC--CEEEEEEccCCEEEEE
Confidence 4667899998 4678888999999999999997 112222 122333 355543 4555566678899999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
|..+++.+.++..- ..-+.+++ ++..|+.+..++.|.
T Consensus 122 D~~Tl~~~~ti~~~-~eGwGLt~---Dg~~L~vSdGs~~l~ 158 (268)
T 3nok_A 122 SGMPPQRERTTRYS-GEGWGLCY---WNGKLVRSDGGTMLT 158 (268)
T ss_dssp ETTTTEEEEEEECS-SCCCCEEE---ETTEEEEECSSSEEE
T ss_pred ECCcCcEEEEEeCC-CceeEEec---CCCEEEEECCCCEEE
Confidence 99999999888742 33355654 556666655566654
No 297
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.61 E-value=0.0041 Score=61.46 Aligned_cols=125 Identities=15% Similarity=0.085 Sum_probs=79.8
Q ss_pred HHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEccccccCCCCcCC
Q 048199 348 FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAG----------VSRRIKVFDFASVVNEPADVHC 417 (495)
Q Consensus 348 ~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s----------~d~~i~vwd~~~~~~~~~~~~~ 417 (495)
..+.+.|. ...+.+..+..| ..+ .+.|+|+++.++.+. .++.|.++|..+. .
T Consensus 99 ~~VsVID~---~t~~vv~~I~vG-----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--------~ 160 (426)
T 3c75_H 99 TQQFVIDG---STGRILGMTDGG-----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--------L 160 (426)
T ss_dssp EEEEEEET---TTTEEEEEEEEC-----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------C
T ss_pred CeEEEEEC---CCCEEEEEEECC-----CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--------c
Confidence 35666665 344566666653 233 899999999777665 3678999999886 2
Q ss_pred Ceeec--C------CCCCeEEEEEcCCCCCEEEEecC--CCcEEEEeCCCCcceeecccccC-------cEEEEEeecCC
Q 048199 418 PVVEM--P------TRSKLSCLSWNKFSKNRIASSDY--EGIVTVWDVTTQQSVMEYEEHEK-------RAWSVDFSRTE 480 (495)
Q Consensus 418 ~~~~~--~------~~~~i~~~~~~p~~~~~l~sg~~--dg~v~iwd~~~~~~~~~~~~h~~-------~v~~v~~~~~~ 480 (495)
.+..+ . .......+.|+|| +.+++.+.. ++.|.+.|..+++.+..+.--.. .-.-+.+++ +
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spD-Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~-d 238 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPD-NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCR-D 238 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET-T
T ss_pred EEEEEECCCccccccCCCcceEEEcCC-CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcC-C
Confidence 22221 1 0123567899999 888887764 57899999999988777653110 011245666 6
Q ss_pred CCeEEEeeCCCc
Q 048199 481 PSMLVSGSDDCK 492 (495)
Q Consensus 481 g~~l~s~s~D~~ 492 (495)
|.+++....++.
T Consensus 239 G~~~~V~~~~~~ 250 (426)
T 3c75_H 239 GSLARVDFADGE 250 (426)
T ss_dssp SSEEEEECCTTC
T ss_pred CCEEEEECCCCc
Confidence 666555444443
No 298
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=96.56 E-value=0.019 Score=61.40 Aligned_cols=111 Identities=9% Similarity=-0.033 Sum_probs=70.7
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCC-----cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSR-----RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY--- 446 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~--- 446 (495)
|...+.++.|+|||++|+..+.++ .|.+||+.++... .......+........ +|+ +..|+..+.
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-----~~~~l~~~~~~~~~~~-~~d-g~~l~~~s~~~~ 338 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-----PVTALIPDLKAQWDFV-DGV-GDQLWFVSGDGA 338 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-----CCEEEECSSSSCEEEE-EEE-TTEEEEEECTTC
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc-----ccEEecCCCCceEEEE-ecc-CCEEEEEECCCC
Confidence 334688999999999888777554 7999998764100 0122223333344443 477 666666554
Q ss_pred -CCcEEEEeCCCC--cceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 447 -EGIVTVWDVTTQ--QSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 447 -dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
++.|.+||+.++ .....+.++...+.+++|. ++.++++...|+..+
T Consensus 339 ~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQ 387 (741)
T ss_dssp TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEE
T ss_pred CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEE
Confidence 345999999875 2333344455667778887 556888888888755
No 299
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.53 E-value=0.037 Score=49.82 Aligned_cols=105 Identities=10% Similarity=0.139 Sum_probs=67.4
Q ss_pred CCCcEEEEEEccCCCEEEEEeCC--CcEEEEEccccccCCCCcCCCeeecCCCCCe--EEEEEcCCCCCEEEEecCCCcE
Q 048199 375 SANIVSSIEFDRDDQLFATAGVS--RRIKVFDFASVVNEPADVHCPVVEMPTRSKL--SCLSWNKFSKNRIASSDYEGIV 450 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~p~~~~~l~sg~~dg~v 450 (495)
....+..+.|++ +.++.+.+.+ ..|+++|+.++ .......-...+ -.+++. ++.++...-.++.+
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg--------kv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG--------RILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEG 87 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC--------CEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEE
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCC--------CEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEE
Confidence 356788999987 6777777775 48999999987 222222222222 234443 24455556678899
Q ss_pred EEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 451 TVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+||..+.+.+.++..- ..-+.+++ ++..|+.+..++.|.
T Consensus 88 ~v~D~~tl~~~~ti~~~-~~Gwglt~---dg~~L~vSdgs~~l~ 127 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYP-GEGWALTS---DDSHLYMSDGTAVIR 127 (243)
T ss_dssp EEEETTTTEEEEEEECS-SCCCEEEE---CSSCEEEECSSSEEE
T ss_pred EEEECCcCcEEEEEeCC-CCceEEee---CCCEEEEECCCCeEE
Confidence 99999999999888743 23356654 455554444466554
No 300
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.16 E-value=0.11 Score=50.62 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=78.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCC------cCCCeeecC-----CCCCeEEEEEcCCC--CCEEEEe
Q 048199 378 IVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPAD------VHCPVVEMP-----TRSKLSCLSWNKFS--KNRIASS 444 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~------~~~~~~~~~-----~~~~i~~~~~~p~~--~~~l~sg 444 (495)
.|..+..+|+|++||..+ +..|.|-.+..+...... ........+ ...+|..+.|||-+ +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 467899999999999886 679999999854211110 000011111 35679999999983 4589999
Q ss_pred cCCCcEEEEeCCCCc--ceeec---------ccccCcEEEEEeecCCCCeEEEee--CCCcEe
Q 048199 445 DYEGIVTVWDVTTQQ--SVMEY---------EEHEKRAWSVDFSRTEPSMLVSGS--DDCKVL 494 (495)
Q Consensus 445 ~~dg~v~iwd~~~~~--~~~~~---------~~h~~~v~~v~~~~~~g~~l~s~s--~D~~v~ 494 (495)
..|++|++||+.... +. .+ ..+...|.+++|.. +|-.|...+ ..|-|+
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEE
Confidence 999999999998532 22 22 12235788999999 887777744 777764
No 301
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.13 E-value=0.031 Score=59.18 Aligned_cols=132 Identities=10% Similarity=0.065 Sum_probs=76.5
Q ss_pred cchhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCc-------------EEEEEccccc
Q 048199 343 AGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRR-------------IKVFDFASVV 409 (495)
Q Consensus 343 ~g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~-------------i~vwd~~~~~ 409 (495)
.|++...+.+|++.. .+.... .+. + ....+++|+ |++.|+.++.+.. |++|++.+..
T Consensus 150 ~G~~~~~i~v~dl~t-g~~~~~-~~~-----~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~ 219 (693)
T 3iuj_A 150 AGSDWREIHLMDVES-KQPLET-PLK-----D--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ 219 (693)
T ss_dssp SSCCEEEEEEEETTT-CSEEEE-EEE-----E--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCG
T ss_pred CCCceEEEEEEECCC-CCCCcc-ccC-----C--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCc
Confidence 466667788888742 221111 111 1 112467899 9999888887754 9999987751
Q ss_pred cCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEE-Eec---CCCcEEEEeCCCCc-ceeecccccCcEEEEEeecCCCC
Q 048199 410 NEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIA-SSD---YEGIVTVWDVTTQQ-SVMEYEEHEKRAWSVDFSRTEPS 482 (495)
Q Consensus 410 ~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~-sg~---~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~g~ 482 (495)
.. ...+.... +...+.++.|+|| +.+|+ +.+ .+..|.+||+.++. ....+..+....... |++.++.
T Consensus 220 ~~----~~~v~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~ 293 (693)
T 3iuj_A 220 ED----DRLVFGAIPAQHHRYVGATVTED-DRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGST 293 (693)
T ss_dssp GG----CEEEESCSGGGCCSEEEEEECTT-SCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTE
T ss_pred cc----ceEEEecCCCCCeEEEEEEEcCC-CCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCE
Confidence 10 01111111 2335788999999 66654 333 23479999998764 456666666666555 5551344
Q ss_pred eEEEeeCC
Q 048199 483 MLVSGSDD 490 (495)
Q Consensus 483 ~l~s~s~D 490 (495)
+++++..|
T Consensus 294 l~~~t~~~ 301 (693)
T 3iuj_A 294 LYLLTNRD 301 (693)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
Confidence 44454443
No 302
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.10 E-value=0.0098 Score=57.60 Aligned_cols=88 Identities=11% Similarity=-0.118 Sum_probs=62.0
Q ss_pred EEEEEeCCC----cEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEec----------CCCcEEEEe
Q 048199 390 LFATAGVSR----RIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSD----------YEGIVTVWD 454 (495)
Q Consensus 390 ~l~s~s~d~----~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~----------~dg~v~iwd 454 (495)
.+++...+. +|.++|..++ ..+..+. ...+ .+.++|| +..++.+. .+++|.+||
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~--------~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD 102 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCG--------VTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFD 102 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred EEEECCccCCccceEEEEECCCC--------eEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEE
Confidence 444555444 7889999886 2333332 2223 7999999 66666664 368999999
Q ss_pred CCCCcceeecccc-------cCcEEEEEeecCCCCeEEEeeC
Q 048199 455 VTTQQSVMEYEEH-------EKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 455 ~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
..+++.+.++.-. ......++|+| ||++|+.+..
T Consensus 103 ~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~ 143 (368)
T 1mda_H 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLF 143 (368)
T ss_dssp TTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEEC
T ss_pred CCCCCEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEcc
Confidence 9999999888533 12356799999 9999888764
No 303
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.93 E-value=0.01 Score=60.53 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=72.9
Q ss_pred EEEEEEccCCCEEEE-EeCCCcEEEEEccccc----cCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 379 VSSIEFDRDDQLFAT-AGVSRRIKVFDFASVV----NEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 379 V~~l~~~p~~~~l~s-~s~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
.-++.|+|||++++. +..+.+|.++|+.+.. ..+......+....-....+.++|+|+ |..+.+.-.|+.|.+|
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~d-G~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGR-GNAYTSLFLDSQVVKW 357 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTT-SEEEEEETTTTEEEEE
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCC-CeEEEEEecCCcEEEE
Confidence 347899999996665 4578999999999641 011111122334444567899999999 6656677789999999
Q ss_pred eCCC----------CcceeecccccCcE-----EEEEeecCCCCeEEEeeC
Q 048199 454 DVTT----------QQSVMEYEEHEKRA-----WSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 454 d~~~----------~~~~~~~~~h~~~v-----~~v~~~~~~g~~l~s~s~ 489 (495)
|+.+ ...+..+..|-.+- .++.+++ ||++|++...
T Consensus 358 di~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk 407 (595)
T 1fwx_A 358 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSK 407 (595)
T ss_dssp EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEES
T ss_pred EhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCC
Confidence 9876 34455555443321 2235578 9999988864
No 304
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=95.92 E-value=0.014 Score=57.62 Aligned_cols=98 Identities=12% Similarity=-0.059 Sum_probs=65.6
Q ss_pred cCCCEEEEE-eCC----CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec----------CCCcE
Q 048199 386 RDDQLFATA-GVS----RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD----------YEGIV 450 (495)
Q Consensus 386 p~~~~l~s~-s~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~----------~dg~v 450 (495)
|+++.++.+ ..+ ++|.++|..+. ..+..+.-.... .+.++|| +..++.+. .++.|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--------~vv~~I~vG~~P-gia~SpD-gk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG--------RILGMTDGGFLP-HPVAAED-GSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECSSC-EEEECTT-SSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC--------EEEEEEECCCCC-ceEECCC-CCEEEEEeccccccccCCCCCEE
Confidence 355544443 333 69999999886 333333222233 8999999 66666655 36789
Q ss_pred EEEeCCCCcceeecccc-------cCcEEEEEeecCCCCeEEEeeC--CCcEe
Q 048199 451 TVWDVTTQQSVMEYEEH-------EKRAWSVDFSRTEPSMLVSGSD--DCKVL 494 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~g~~l~s~s~--D~~v~ 494 (495)
.++|..+++.+..+.-- ......+.|+| ||++|+.+.. ++.|.
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~Vs 203 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVG 203 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEE
T ss_pred EEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEE
Confidence 99999999888776421 12345789999 9999988774 45553
No 305
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=95.92 E-value=0.22 Score=45.33 Aligned_cols=101 Identities=8% Similarity=-0.006 Sum_probs=65.2
Q ss_pred cEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 378 IVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 378 ~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
.+.+++|++++ .++++....+.|.+++.... ...... ........++++++++.++++-..++.|.++|.
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~--------~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGG--------EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSC--------CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCC--------CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence 36799999965 45556667789999998764 111111 222468899999974556666667789999998
Q ss_pred CCCcceeeccc-ccCcEEEEEeecCCCCeEEEee
Q 048199 456 TTQQSVMEYEE-HEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 456 ~~~~~~~~~~~-h~~~v~~v~~~~~~g~~l~s~s 488 (495)
... ....+.. .......++++| ++..|+.+.
T Consensus 109 ~g~-~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~ 140 (267)
T 1npe_A 109 DGT-QRRVLFDTGLVNPRGIVTDP-VRGNLYWTD 140 (267)
T ss_dssp TSC-SCEEEECSSCSSEEEEEEET-TTTEEEEEE
T ss_pred CCC-CEEEEEECCCCCccEEEEee-CCCEEEEEE
Confidence 643 2222221 224568899998 555444333
No 306
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=95.78 E-value=0.0014 Score=63.83 Aligned_cols=70 Identities=3% Similarity=-0.015 Sum_probs=42.2
Q ss_pred CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEE 466 (495)
Q Consensus 387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~ 466 (495)
++..+++++.|+.|..||..++. ..-.+.. +.+.+..+..+ +.++++++.||.|..||..+|+.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~--------~~W~~~~-~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS--------IKWTLKE-DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC--------EEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC--------EEEEecC-CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 57788899999999999999871 1111111 23333444455 66788888999999999998887665543
No 307
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=95.74 E-value=0.024 Score=54.86 Aligned_cols=88 Identities=6% Similarity=-0.011 Sum_probs=62.1
Q ss_pred EEEccCCCEEEEEeC---------CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEE
Q 048199 382 IEFDRDDQLFATAGV---------SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVT 451 (495)
Q Consensus 382 l~~~p~~~~l~s~s~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~ 451 (495)
+.|+|+++.++.+.. +..+.+||+.+. ..+..+.-....+.+.|+||+..++++.. .++.|.
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~--------~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--------QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--------CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC--------eEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEE
Confidence 679999887665432 235669999886 22333322235889999999444677777 599999
Q ss_pred EEeCCCCcceeecccccCcEEEEEeec
Q 048199 452 VWDVTTQQSVMEYEEHEKRAWSVDFSR 478 (495)
Q Consensus 452 iwd~~~~~~~~~~~~h~~~v~~v~~~~ 478 (495)
++|+.+++.+.++.... ..+.+++.+
T Consensus 341 VID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 341 IYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred EEECCCCcEEEEEECCC-CCCEEEeec
Confidence 99999999999987554 345666653
No 308
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=95.55 E-value=0.27 Score=44.67 Aligned_cols=109 Identities=11% Similarity=-0.015 Sum_probs=67.0
Q ss_pred CcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC--CCcEEEE
Q 048199 377 NIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY--EGIVTVW 453 (495)
Q Consensus 377 ~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~--dg~v~iw 453 (495)
.....++++|++ .++++....+.|.+++++... ..............++++|+++.++++... .+.|..+
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 467899999964 556666667899999987531 111111122467899999973544444433 4688888
Q ss_pred eCCCCcceeecc-cccCcEEEEEeecCCCCeE-EEeeCCCcEe
Q 048199 454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSML-VSGSDDCKVL 494 (495)
Q Consensus 454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l-~s~s~D~~v~ 494 (495)
++. +.....+. ..-.....++|++ ++..| ++....+.|.
T Consensus 152 ~~d-g~~~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 152 HMD-GTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAE 192 (267)
T ss_dssp ETT-SCCCEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEE
T ss_pred ecC-CCCcEEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEE
Confidence 876 43333332 2234678999999 66555 4444455553
No 309
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.45 E-value=0.042 Score=58.72 Aligned_cols=100 Identities=16% Similarity=0.031 Sum_probs=63.0
Q ss_pred cEEEEEEc-cCCCEEEEEeC-CC----cEEEEEcccc-ccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC---
Q 048199 378 IVSSIEFD-RDDQLFATAGV-SR----RIKVFDFASV-VNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE--- 447 (495)
Q Consensus 378 ~V~~l~~~-p~~~~l~s~s~-d~----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d--- 447 (495)
.+.+..|+ |||++|+.+.. +| +|+++|+.++ .. +. ..+.. ....+.|+|| +..|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~---~~~~~-----~~~~~~WspD-g~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IA---DKVSG-----TNGEIVWGPD-HTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CC---CCEEE-----ECSCCEECSS-TTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CC---ccccC-----ceeeEEEecC-CCEEEEEEECCCC
Confidence 67889999 99998775432 22 4999999876 21 10 11111 1246789999 6555554544
Q ss_pred --CcEEEEeCCCCcce--eecc-cccCcEEEEEeecCCCCeEEEee
Q 048199 448 --GIVTVWDVTTQQSV--MEYE-EHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 448 --g~v~iwd~~~~~~~--~~~~-~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
..|.+|++.++... ..+. .+.....++.|+| ||.+|+..+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~ 289 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGS 289 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEe
Confidence 25788888776432 2332 2234566889999 998877655
No 310
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.27 E-value=0.09 Score=48.15 Aligned_cols=130 Identities=9% Similarity=-0.038 Sum_probs=79.9
Q ss_pred chhhHHhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-
Q 048199 344 GLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM- 422 (495)
Q Consensus 344 g~~d~~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~- 422 (495)
...+..+.++|.. ..+.+..+..+ ...=+. +.++|..++.+..+++|.++|..+. .....+
T Consensus 82 t~~~~~v~viD~~---t~~v~~~i~~g-----~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~--------~v~~~I~ 143 (266)
T 2iwa_A 82 VWLKNIGFIYDRR---TLSNIKNFTHQ-----MKDGWG--LATDGKILYGSDGTSILYEIDPHTF--------KLIKKHN 143 (266)
T ss_dssp ETTCSEEEEEETT---TTEEEEEEECC-----SSSCCE--EEECSSSEEEECSSSEEEEECTTTC--------CEEEEEE
T ss_pred EecCCEEEEEECC---CCcEEEEEECC-----CCCeEE--EEECCCEEEEECCCCeEEEEECCCC--------cEEEEEE
Confidence 3334455555552 34455556543 111123 4457776666667889999999875 111111
Q ss_pred -C----CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-------------cCcEEEEEeecCCCC-e
Q 048199 423 -P----TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-------------EKRAWSVDFSRTEPS-M 483 (495)
Q Consensus 423 -~----~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~g~-~ 483 (495)
+ .-..++.+.|. + +.+++....++.|.+-|..+++.+..+.-. ....+.|+|+| ++. +
T Consensus 144 Vg~~~~p~~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~-~~~~l 220 (266)
T 2iwa_A 144 VKYNGHRVIRLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ-ENKRI 220 (266)
T ss_dssp CEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET-TTTEE
T ss_pred ECCCCcccccceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC-CCCEE
Confidence 1 11247788888 5 655566556789999999999988877521 13568999999 665 5
Q ss_pred EEEeeCCCcEe
Q 048199 484 LVSGSDDCKVL 494 (495)
Q Consensus 484 l~s~s~D~~v~ 494 (495)
++++....+|.
T Consensus 221 fVTgk~~~~v~ 231 (266)
T 2iwa_A 221 FVTGKLWPKLF 231 (266)
T ss_dssp EEEETTCSEEE
T ss_pred EEECCCCCeEE
Confidence 56665565553
No 311
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.15 E-value=0.026 Score=59.70 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=49.7
Q ss_pred CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccccCc-EEEEEe
Q 048199 398 RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR-AWSVDF 476 (495)
Q Consensus 398 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~ 476 (495)
++|..||+.++. .+-...+...++.-.+... +.+++.|+.||.|+.||.++|+.+..+...... ..-+.|
T Consensus 455 g~l~A~D~~tG~--------~~W~~~~~~~~~~g~~~ta-gglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty 525 (689)
T 1yiq_A 455 GKLIAWDPVKQQ--------AAWEVPYVTIFNGGTLSTA-GNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTY 525 (689)
T ss_dssp EEEEEEETTTTE--------EEEEEEESSSCCCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred eeEEEEECCCCC--------eEeEccCCCCccCccceEC-CCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEE
Confidence 668888887761 1111111222222244445 678899999999999999999999888754322 233556
Q ss_pred ecCCCC-eEEEee
Q 048199 477 SRTEPS-MLVSGS 488 (495)
Q Consensus 477 ~~~~g~-~l~s~s 488 (495)
.. +|. +++..+
T Consensus 526 ~~-~G~qyv~~~~ 537 (689)
T 1yiq_A 526 SV-DGEQYVTFMA 537 (689)
T ss_dssp EE-TTEEEEEEEE
T ss_pred EE-CCEEEEEEEe
Confidence 66 766 444333
No 312
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.0085 Score=56.67 Aligned_cols=64 Identities=20% Similarity=0.411 Sum_probs=48.7
Q ss_pred CCccccccccchhhhcc-ccCCCCccchhhH--HhhhcCC--CCCCCCCCcCccCCCcchHHHHHHHHH
Q 048199 50 DKDMLCPICMQIIKEAF-LTACGHSFCYMCI--ITHLRNK--SDCPCCGHYLTNNQLYPNFLLDKLLKK 113 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci--~~~~~~~--~~CP~Cr~~~~~~~l~~n~~l~~~v~~ 113 (495)
.-.|.|||.+..+..|+ ...|.|.-|.... ..+.... -.||+|.+.+...+|.....+..++..
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 44689999999999998 6789999777642 2222222 389999999999999888777776553
No 313
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=95.09 E-value=0.12 Score=50.84 Aligned_cols=138 Identities=13% Similarity=0.159 Sum_probs=86.5
Q ss_pred cccchhhHHhhhhhhhcc-cCceEEEEeecccccc--CCCcEEEEEEccCCCEEEEEeCC------CcEEEEEccccccC
Q 048199 341 YNAGLADFQSVLTTFTRY-SRLRVIAELRHGDIFH--SANIVSSIEFDRDDQLFATAGVS------RRIKVFDFASVVNE 411 (495)
Q Consensus 341 ~~~g~~d~~~~lw~~~~~-~~~~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~l~s~s~d------~~i~vwd~~~~~~~ 411 (495)
++.|..+.+|.++|+... .+.+.+.++...++.. ....-..+.+.|+| +++++..+ +.|.++|..+.
T Consensus 99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~--- 174 (462)
T 2ece_A 99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF--- 174 (462)
T ss_dssp EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC---
T ss_pred EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC---
Confidence 456777778888887422 2334444453222210 11123456778999 77777666 78999999876
Q ss_pred CCCcCCCeeecC---C-CCCeEEEEEcCCCCCEEEEec-------------------CCCcEEEEeCCCCcceeecccc-
Q 048199 412 PADVHCPVVEMP---T-RSKLSCLSWNKFSKNRIASSD-------------------YEGIVTVWDVTTQQSVMEYEEH- 467 (495)
Q Consensus 412 ~~~~~~~~~~~~---~-~~~i~~~~~~p~~~~~l~sg~-------------------~dg~v~iwd~~~~~~~~~~~~h- 467 (495)
..+..+. . ..-.+.+-|+|+ ++.+++.. .+.+|.+||+.+++.+.++.--
T Consensus 175 -----~v~~~~~~~~~~~~~~Yd~~~~p~-~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 175 -----EPLGKWEIDRGDQYLAYDFWWNLP-NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp -----CEEEECCSBCTTCCCCCCEEEETT-TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred -----eEEEEEccCCCCccccceEEECCC-CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 2222221 1 112346888999 78888885 4689999999988877777532
Q ss_pred -cCcEEEEEe--ecCCCCeEEEeeC
Q 048199 468 -EKRAWSVDF--SRTEPSMLVSGSD 489 (495)
Q Consensus 468 -~~~v~~v~~--~~~~g~~l~s~s~ 489 (495)
......+.| +| ++.+++.++.
T Consensus 249 ~g~~P~~i~f~~~P-dg~~aYV~~e 272 (462)
T 2ece_A 249 ENRMALELRPLHDP-TKLMGFINMV 272 (462)
T ss_dssp TEEEEEEEEECSST-TCCEEEEEEE
T ss_pred CCCccceeEeeECC-CCCEEEEEEe
Confidence 123445555 89 8888777663
No 314
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.02 E-value=0.24 Score=49.00 Aligned_cols=111 Identities=12% Similarity=0.112 Sum_probs=65.8
Q ss_pred CCcEEEEEEccCCCEEEEEeC-CC----cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199 376 ANIVSSIEFDRDDQLFATAGV-SR----RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIV 450 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~-d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v 450 (495)
......|+|+++++.|+.+.. ++ .+.+++..... .....+........++++|+++.++++-..++.|
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~-------~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V 250 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF-------KVITELTKGQNCNGAETHPINGELYFNSWNAGQV 250 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS-------CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce-------eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEE
Confidence 456789999999995444433 22 23334433221 1001111223467889999548788887788899
Q ss_pred EEEeCCCCcceeecc-cccCcEEEEEeecCCCCe-EEEeeCCCcEe
Q 048199 451 TVWDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSM-LVSGSDDCKVL 494 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~-l~s~s~D~~v~ 494 (495)
..||...+.....+. +.....+.++|+| +|.+ +++-...+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 251 FRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQHYIL 295 (430)
T ss_dssp EEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEE
T ss_pred EEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCCEEE
Confidence 999988654322111 1124567899999 8884 45544555553
No 315
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=94.90 E-value=0.42 Score=45.63 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=69.5
Q ss_pred CcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcEEEEe
Q 048199 377 NIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iwd 454 (495)
....++++++ .++++++-...+.|.+++++.. ...+...........++++|.++.++++-..+ +.|..+|
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-------~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-------SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-------ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 3456899997 4566677777889999998764 11112222335678999999756666666555 7899998
Q ss_pred CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
+. |.....+. ..-...+.|+|++.++.+.++-+..+.|
T Consensus 189 ~d-G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I 227 (349)
T 3v64_C 189 MD-GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 227 (349)
T ss_dssp TT-SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CC-CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEE
Confidence 76 44333332 2344678999998344444554445544
No 316
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=94.86 E-value=0.034 Score=58.68 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=49.6
Q ss_pred CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeeccccc-CcEEEEEe
Q 048199 398 RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEHE-KRAWSVDF 476 (495)
Q Consensus 398 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~ 476 (495)
+.|..||+.++. .+-...+...+++..+..+ +.+++.|+.||.+++||..+|+.+.++.... ....-+.|
T Consensus 457 g~l~A~D~~tG~--------~~W~~~~~~~~~~g~~~~~-g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y 527 (677)
T 1kb0_A 457 GRLLAWDPVAQK--------AAWSVEHVSPWNGGTLTTA-GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTY 527 (677)
T ss_dssp EEEEEEETTTTE--------EEEEEEESSSCCCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred cEEEEEeCCCCc--------EEeecCCCCCCcCcceEeC-CCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEE
Confidence 678888888761 1111122223344445555 6688889999999999999999998887432 22233455
Q ss_pred ecCCCCeEE
Q 048199 477 SRTEPSMLV 485 (495)
Q Consensus 477 ~~~~g~~l~ 485 (495)
.. +|..++
T Consensus 528 ~~-~G~~~v 535 (677)
T 1kb0_A 528 MV-DGRQYV 535 (677)
T ss_dssp EE-TTEEEE
T ss_pred Ee-CCEEEE
Confidence 56 665443
No 317
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=94.69 E-value=0.52 Score=44.99 Aligned_cols=110 Identities=7% Similarity=0.035 Sum_probs=68.2
Q ss_pred CcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 377 NIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 377 ~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
..+.+++|++. +.++.+-...+.|..+++.... ..............+++++.++.++++-...+.|.+++.
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 145 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 145 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCC-------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence 44789999975 4555666678889999987651 111111122345688888765667777777889999998
Q ss_pred CCCcceeecccccCcEEEEEeecCCCCeEEEeeCC-CcE
Q 048199 456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD-CKV 493 (495)
Q Consensus 456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D-~~v 493 (495)
........+...-.....+++.|.++.++++-..+ +.|
T Consensus 146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence 74332222323335578899998445445554433 444
No 318
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=94.69 E-value=0.026 Score=40.78 Aligned_cols=47 Identities=28% Similarity=0.693 Sum_probs=35.9
Q ss_pred ccccccccchhh-----hcccc--CCCCccchhhHHhhhc-CCCCCCCCCCcCcc
Q 048199 52 DMLCPICMQIIK-----EAFLT--ACGHSFCYMCIITHLR-NKSDCPCCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~~~~~-----~Pv~l--~CGH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~ 98 (495)
.-.|.||++..- +|.+. .|+-..|+.|.+--.. ....||+|+.++..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 357999999864 34433 6999999999985444 45799999998863
No 319
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.68 E-value=0.49 Score=44.04 Aligned_cols=106 Identities=10% Similarity=0.030 Sum_probs=63.3
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-C-cEEEEe
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-G-IVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g-~v~iwd 454 (495)
....+++|+++++++++...++.|..||.... ..........+..+++.++ +.++++.... + .|..+|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~~~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHATVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEEeCCCCceeEEEcCC-CcEEEEeccCCcceEEEEc
Confidence 45679999999998888778899999987654 1111222346889999999 7766655432 2 466777
Q ss_pred CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
..++....... ........+++.+ ++..+++.+.++.|
T Consensus 102 ~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i 140 (306)
T 2p4o_A 102 KSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAI 140 (306)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEE
T ss_pred CCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeE
Confidence 77765432111 1122234444444 44444444445544
No 320
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=94.68 E-value=0.22 Score=45.31 Aligned_cols=96 Identities=9% Similarity=-0.065 Sum_probs=62.6
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---CC---CCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 380 SSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM---PT---RSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 380 ~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~---~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
+.++ +++..|+.+..+.+|.++|..+. ..+..+ .. -..++.+.|. + +.+++....+..|.+-
T Consensus 139 wGLt--~Dg~~L~vSdGs~~l~~iDp~T~--------~v~~~I~V~~~g~~v~~lNeLe~~-d-G~lyanvw~s~~I~vI 206 (268)
T 3nok_A 139 WGLC--YWNGKLVRSDGGTMLTFHEPDGF--------ALVGAVQVKLRGQPVELINELECA-N-GVIYANIWHSSDVLEI 206 (268)
T ss_dssp CCEE--EETTEEEEECSSSEEEEECTTTC--------CEEEEEECEETTEECCCEEEEEEE-T-TEEEEEETTCSEEEEE
T ss_pred eEEe--cCCCEEEEECCCCEEEEEcCCCC--------eEEEEEEeCCCCcccccccccEEe-C-CEEEEEECCCCeEEEE
Confidence 3444 45676666666889999998875 111111 11 1246778887 4 6555555567899999
Q ss_pred eCCCCcceeecccc-------------cCcEEEEEeecCCCCeEEEe
Q 048199 454 DVTTQQSVMEYEEH-------------EKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 454 d~~~~~~~~~~~~h-------------~~~v~~v~~~~~~g~~l~s~ 487 (495)
|..+|+.+..+.-. .+..+.|+|.|....+++||
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999887766421 24678999999444555555
No 321
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.55 E-value=0.015 Score=54.85 Aligned_cols=64 Identities=20% Similarity=0.424 Sum_probs=48.2
Q ss_pred CCCccccccccchhhhcc-ccCCCCccchhhHH--hhhcCC--CCCCCCCCcCccCCCcchHHHHHHHH
Q 048199 49 LDKDMLCPICMQIIKEAF-LTACGHSFCYMCII--THLRNK--SDCPCCGHYLTNNQLYPNFLLDKLLK 112 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~--~~~~~~--~~CP~Cr~~~~~~~l~~n~~l~~~v~ 112 (495)
+.-.|.|||.+..++.|+ ...|.|.-|..... ...... -.||+|++.+...+|.....+..++.
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 344688999999999998 67899997766432 222222 38999999999999988877776654
No 322
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.41 E-value=0.39 Score=43.09 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=69.7
Q ss_pred HhhhhhhhcccCceEEEEeeccccccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec--C-C-
Q 048199 349 QSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM--P-T- 424 (495)
Q Consensus 349 ~~~lw~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~-~- 424 (495)
.+.++|. ..+..+.++..+ ..+ +.++ +++..|+.+..+.+|.++|..+. .....+ . +
T Consensus 86 ~v~v~D~---~tl~~~~ti~~~----~~G--wglt--~dg~~L~vSdgs~~l~~iDp~t~--------~~~~~I~V~~~g 146 (243)
T 3mbr_X 86 EGFVYDL---ATLTPRARFRYP----GEG--WALT--SDDSHLYMSDGTAVIRKLDPDTL--------QQVGSIKVTAGG 146 (243)
T ss_dssp EEEEEET---TTTEEEEEEECS----SCC--CEEE--ECSSCEEEECSSSEEEEECTTTC--------CEEEEEECEETT
T ss_pred EEEEEEC---CcCcEEEEEeCC----CCc--eEEe--eCCCEEEEECCCCeEEEEeCCCC--------eEEEEEEEccCC
Confidence 4444444 334555555542 112 4554 45665555555888999998875 111111 1 1
Q ss_pred --CCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc-------------cCcEEEEEeecCCCCeEEEee
Q 048199 425 --RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH-------------EKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 425 --~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~g~~l~s~s 488 (495)
-..++-+.|. + +.+++....+..|.+.|..+|+.+..+.-. .+..++|+|+| ++..|+..+
T Consensus 147 ~~~~~lNeLe~~-~-G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTG 222 (243)
T 3mbr_X 147 RPLDNLNELEWV-N-GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTG 222 (243)
T ss_dssp EECCCEEEEEEE-T-TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEE
T ss_pred cccccceeeEEe-C-CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC-CCCEEEEEC
Confidence 1346677776 3 555555546779999999999887766411 23678999999 555554444
No 323
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.19 E-value=0.017 Score=40.57 Aligned_cols=35 Identities=23% Similarity=0.809 Sum_probs=29.8
Q ss_pred CccccccccchhhhccccCC----CCccchhhHHhhhcC
Q 048199 51 KDMLCPICMQIIKEAFLTAC----GHSFCYMCIITHLRN 85 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l~C----GH~FC~~Ci~~~~~~ 85 (495)
..|.|.+|.+.+.|-....| +|-||..|-..+++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 35889999999999865554 999999999988875
No 324
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=94.01 E-value=0.58 Score=45.36 Aligned_cols=108 Identities=7% Similarity=0.023 Sum_probs=66.4
Q ss_pred CCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 376 ANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 376 ~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
...+.+++|++. +.++++-...+.|..|++.... ..............+++++.++.++++-...+.|.+++
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 345789999974 5566666678889999987651 11111112234567888876466777777788899999
Q ss_pred CCCCcceeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
.........+...-.....+++.|.++.++++-..+
T Consensus 188 ~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~ 223 (386)
T 3v65_B 188 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 223 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS
T ss_pred CCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC
Confidence 874332222333335678899988344444444333
No 325
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.97 E-value=0.88 Score=42.63 Aligned_cols=109 Identities=9% Similarity=0.004 Sum_probs=67.2
Q ss_pred CcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcEEEEe
Q 048199 377 NIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iwd 454 (495)
....++++++ .++++++-...+.|.++++... ...............++++|.++.++++.... +.|..++
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~-------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 3457899987 4556667677889999998754 11111112335678999999745555555443 6888888
Q ss_pred CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
+. |.....+. ..-...+.++|++.++.++++-+..+.|
T Consensus 150 ~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I 188 (316)
T 1ijq_A 150 LN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188 (316)
T ss_dssp TT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence 75 44444332 2335678999998334444444444444
No 326
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=93.94 E-value=0.47 Score=46.00 Aligned_cols=108 Identities=11% Similarity=0.064 Sum_probs=67.1
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcEEEEeC
Q 048199 378 IVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIVTVWDV 455 (495)
Q Consensus 378 ~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iwd~ 455 (495)
....|++++ .+.++++-...+.|.+++++.. ...+...........++++|.++.++++-..+ +.|..+|+
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~-------~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSC-------SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC-------ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 456788997 4556667777788888888754 11112222335679999999855555555555 78888887
Q ss_pred CCCcceeec-ccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 456 TTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 456 ~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
. |.....+ ...-...+.|+|++.++.+.++-+..+.|
T Consensus 233 d-G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I 270 (386)
T 3v65_B 233 D-GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270 (386)
T ss_dssp T-SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEE
T ss_pred C-CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEE
Confidence 6 4333333 22344678999997344444555455554
No 327
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=93.85 E-value=0.21 Score=49.11 Aligned_cols=107 Identities=9% Similarity=0.009 Sum_probs=66.7
Q ss_pred CcEEEEEEccCCCEEEEEe-------------------CCCcEEEEEccccccCCCCcCCCeee--cC-CCCCeEEEEE-
Q 048199 377 NIVSSIEFDRDDQLFATAG-------------------VSRRIKVFDFASVVNEPADVHCPVVE--MP-TRSKLSCLSW- 433 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s-------------------~d~~i~vwd~~~~~~~~~~~~~~~~~--~~-~~~~i~~~~~- 433 (495)
..-+++.|+|+++.++++. .+.+|.+||+.++ ..+.. .+ .......+.|
T Consensus 188 ~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--------k~~~tI~vg~~g~~P~~i~f~ 259 (462)
T 2ece_A 188 YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--------KRIHSLTLGEENRMALELRPL 259 (462)
T ss_dssp CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--------EEEEEEESCTTEEEEEEEEEC
T ss_pred cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--------cEeeEEecCCCCCccceeEee
Confidence 3345788999999988885 3789999999875 11222 22 1123455555
Q ss_pred -cCCCCCEEEEec------CCCcEEEEeCCCCcc--eee-----------c-------ccccCcEEEEEeecCCCCeEEE
Q 048199 434 -NKFSKNRIASSD------YEGIVTVWDVTTQQS--VME-----------Y-------EEHEKRAWSVDFSRTEPSMLVS 486 (495)
Q Consensus 434 -~p~~~~~l~sg~------~dg~v~iwd~~~~~~--~~~-----------~-------~~h~~~v~~v~~~~~~g~~l~s 486 (495)
+|+ +.+++.++ .+++|.+|....+.. .+. + .+-......|.+++ ||++|..
T Consensus 260 ~~Pd-g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYV 337 (462)
T 2ece_A 260 HDPT-KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYL 337 (462)
T ss_dssp SSTT-CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEE
T ss_pred ECCC-CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-CCCEEEE
Confidence 999 77776666 566887765443310 010 1 01123467889999 9998877
Q ss_pred eeC-CCcE
Q 048199 487 GSD-DCKV 493 (495)
Q Consensus 487 ~s~-D~~v 493 (495)
+.. .+.|
T Consensus 338 Snrg~d~V 345 (462)
T 2ece_A 338 SLWGIGEV 345 (462)
T ss_dssp EETTTTEE
T ss_pred EeCCCCEE
Confidence 765 4444
No 328
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.79 E-value=0.19 Score=44.32 Aligned_cols=106 Identities=6% Similarity=-0.091 Sum_probs=60.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCC--CCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 378 IVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT--RSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
.+.+++|||+|.+.+. .++.+.-.+..+... .........++. -....++-|+|+ +.+.++ .||.|.-|+-
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~F~a~~fD~~-G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN--DNWMGRAKKIGNGGWNQFQFLFFDPN-GYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTT--CCHHHHCEEEECSCGGGCSEEEECTT-SCEEEE--ETTEEEEESC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCc--ccccccccEecccccccceEEEECCC-CCEEEe--CCCEEEEeCC
Confidence 5679999999987766 566554444433100 000000111111 111468889998 777766 5699988886
Q ss_pred CCCccee-----ecccc--cCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 456 TTQQSVM-----EYEEH--EKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 456 ~~~~~~~-----~~~~h--~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
.+...-. +..+. =..+..|.|.| +|.+.+.. |+.+
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~l 156 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQF 156 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcE
Confidence 4422111 11111 13578999999 98776666 6655
No 329
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=93.78 E-value=0.49 Score=42.90 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=60.3
Q ss_pred cCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCC-CCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec
Q 048199 386 RDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPT-RSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY 464 (495)
Q Consensus 386 p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~ 464 (495)
+++..|+.+..+.+|.++|..+... .. .-.+...+. ...++.+.|. + +.+++..-.+..|.+.|..+|+.+..+
T Consensus 134 ~dg~~L~~SdGs~~i~~iDp~T~~v-~~--~I~V~~~g~~~~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 134 HNDQYLIMSDGTPVLRFLDPESLTP-VR--TITVTAHGEELPELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp ECSSCEEECCSSSEEEEECTTTCSE-EE--EEECEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred cCCCEEEEECCCCeEEEEcCCCCeE-EE--EEEeccCCccccccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 4666555555578899999887510 00 001111011 1345677887 4 656655556889999999999887766
Q ss_pred ccc------------cCcEEEEEeecCCCCeEEEee
Q 048199 465 EEH------------EKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 465 ~~h------------~~~v~~v~~~~~~g~~l~s~s 488 (495)
.-. ....+.|+|+| ++..|+.++
T Consensus 209 d~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTG 243 (262)
T 3nol_A 209 DLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLFVTG 243 (262)
T ss_dssp ECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred ECCcCccccccccCcCCceEEEEEcC-CCCEEEEEC
Confidence 431 23668999999 666555554
No 330
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.54 E-value=1.2 Score=41.59 Aligned_cols=107 Identities=10% Similarity=0.023 Sum_probs=63.2
Q ss_pred CCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 376 ANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 376 ~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
.....+++|++.+ .++++-...+.|..+++...... ....... .....+..+++++.++.++++-..++.|.++
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~----~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~ 104 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC----cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEE
Confidence 3457899999854 56666667789999998762000 0111111 1223457888887646666776778899999
Q ss_pred eCCCCcceeec-ccccCcEEEEEeecCCCCeEEEe
Q 048199 454 DVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 454 d~~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
|... .....+ ...-.....+++.|.++.++++.
T Consensus 105 ~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d 138 (316)
T 1ijq_A 105 DTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTD 138 (316)
T ss_dssp ETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred eCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEc
Confidence 9874 333333 22334678899988344444443
No 331
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.41 E-value=1.3 Score=43.12 Aligned_cols=110 Identities=9% Similarity=0.006 Sum_probs=68.2
Q ss_pred CCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC-CCcEEEE
Q 048199 376 ANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY-EGIVTVW 453 (495)
Q Consensus 376 ~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~-dg~v~iw 453 (495)
.....+|++++ .++++++-...+.|.+.+++.. ...+...........++++|..+.++++-.. .+.|...
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~-------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC-------SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCC-------ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 35678999998 5667777777889999998764 1111111233457899999974545555433 3789888
Q ss_pred eCCCCcceeec-ccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 454 DVTTQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 454 d~~~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
++. |.....+ ...-...+.|+|++.++.+.++-+..+.|
T Consensus 231 ~~d-G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I 270 (400)
T 3p5b_L 231 GLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270 (400)
T ss_dssp ETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred eCC-CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence 876 4433333 22335678999998344444444444444
No 332
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=93.37 E-value=0.43 Score=50.83 Aligned_cols=105 Identities=8% Similarity=0.058 Sum_probs=60.5
Q ss_pred EEEEEccCCCEEEEEeCCC-----cEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC---CCcEE
Q 048199 380 SSIEFDRDDQLFATAGVSR-----RIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY---EGIVT 451 (495)
Q Consensus 380 ~~l~~~p~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~---dg~v~ 451 (495)
.++.|+|||+.|+....|. .|.++++.++... ...+...........+.|+|| +.+|+..+. ...|.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~----~~lv~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~l~ 298 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSE----DVCLYEEHNPLFSAFMYKAAD-TNTLCIGSQSPETAEVH 298 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGG----CEEEEECCCTTCEEEEEECTT-SSEEEEEEECSSCEEEE
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchh----cEEEEecCCCceEEEEEECCC-CCEEEEEecCCCCceEE
Confidence 4688999998877776652 4677777654100 011111122334678899999 776655442 33588
Q ss_pred EEeCCCCc--c--eeecccccCcEEEEEeecCCCCeEEEeeCC
Q 048199 452 VWDVTTQQ--S--VMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 490 (495)
Q Consensus 452 iwd~~~~~--~--~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D 490 (495)
++|+.++. . .....+.....+++.|+. ++.+++.+..+
T Consensus 299 ~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~ 340 (751)
T 2xe4_A 299 LLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEG 340 (751)
T ss_dssp EEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTT
T ss_pred EEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCC
Confidence 88988752 2 223333455667777664 44444444443
No 333
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.27 E-value=1.1 Score=42.07 Aligned_cols=112 Identities=10% Similarity=0.081 Sum_probs=70.6
Q ss_pred cEEEEEE---ccCCCEEEEEe-------------CCCcEEEEEcc---ccccCCC-CcCCCeee-----cC-CCCCeEEE
Q 048199 378 IVSSIEF---DRDDQLFATAG-------------VSRRIKVFDFA---SVVNEPA-DVHCPVVE-----MP-TRSKLSCL 431 (495)
Q Consensus 378 ~V~~l~~---~p~~~~l~s~s-------------~d~~i~vwd~~---~~~~~~~-~~~~~~~~-----~~-~~~~i~~~ 431 (495)
.+..|.| +|++.++++.. .+..|..||+. ++..... .. ..+.. .+ .......+
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL-~~~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNF-EKVQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEES-HHHHHHHHHHHSSCCEEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecC-ccccccccccccccccCCcee
Confidence 4689999 68888877543 26779999998 5411100 00 00000 00 12347899
Q ss_pred EEcCCCCCEEEEecCC-CcEEEEeCCCCcceeeccc------ccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 432 SWNKFSKNRIASSDYE-GIVTVWDVTTQQSVMEYEE------HEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 432 ~~~p~~~~~l~sg~~d-g~v~iwd~~~~~~~~~~~~------h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
+..++ |+..++++.. +.|..+|.. |..+..+.- .....+.++++| +|+.|+....++.+
T Consensus 143 avD~~-GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L 208 (334)
T 2p9w_A 143 AQDRD-GNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRAL 208 (334)
T ss_dssp EECTT-SCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSE
T ss_pred EECCC-CCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeE
Confidence 99999 9999999888 887777765 443333321 122367999999 99887777556655
No 334
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=93.11 E-value=0.39 Score=48.95 Aligned_cols=64 Identities=20% Similarity=0.068 Sum_probs=43.2
Q ss_pred CeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCc------------ceeecccccCcEEEEEeecCCCCeEEEe-eCCCcE
Q 048199 427 KLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQ------------SVMEYEEHEKRAWSVDFSRTEPSMLVSG-SDDCKV 493 (495)
Q Consensus 427 ~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~------------~~~~~~~h~~~v~~v~~~~~~g~~l~s~-s~D~~v 493 (495)
...++.++||+...++++..+.+|.++|+.+.. .+.... -....+.++|++ +| ++++. --|+.|
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG-~aY~t~~ldsqV 354 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RG-NAYTSLFLDSQV 354 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TS-EEEEEETTTTEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CC-eEEEEEecCCcE
Confidence 456899999944456667788899999998653 122222 234578899999 98 55444 346655
No 335
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=92.85 E-value=0.19 Score=52.98 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=34.9
Q ss_pred CcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 448 GIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 448 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
|.|..||+.+++.+-.+. +..++++..+.. .+.+++.++.|+.|+
T Consensus 457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~-~g~~v~~g~~dg~l~ 501 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLV 501 (677)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEE
T ss_pred cEEEEEeCCCCcEEeecC-CCCCCcCcceEe-CCCEEEEECCCCcEE
Confidence 789999999999887775 344555566666 777888889999876
No 336
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=92.84 E-value=2.1 Score=38.65 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=68.3
Q ss_pred cCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 374 HSANIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 374 ~h~~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
+-...+..++|+|++. +++....++.|...|.... . .....+......-.+++.++ +.++++.-.++.+.+
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~--v-----~~~i~l~g~~D~EGIa~~~~-g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGD--L-----IRTIPLDFVKDLETIEYIGD-NQFVISDERDYAIYV 95 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCC--E-----EEEEECSSCSSEEEEEECST-TEEEEEETTTTEEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCC--E-----EEEEecCCCCChHHeEEeCC-CEEEEEECCCCcEEE
Confidence 4456799999999765 5555667788888887722 0 11111233356888999988 667677666788999
Q ss_pred EeCCCCcc---eeecc------cccCcEEEEEeecCCCCeEEEeeC
Q 048199 453 WDVTTQQS---VMEYE------EHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 453 wd~~~~~~---~~~~~------~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
+++..... +.... ......-+++|.| .+..|+++..
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E 140 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKE 140 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEE
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEEC
Confidence 98765332 12211 1234568999999 6666655554
No 337
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=92.82 E-value=2.1 Score=41.56 Aligned_cols=108 Identities=10% Similarity=0.046 Sum_probs=65.7
Q ss_pred CCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 376 ANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 376 ~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
...+.+|+|++. +.++.+-...+.|..+++...... ........ .......+++.+.++.++++-...+.|.+.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~----~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC----CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 456889999985 455666667788999988763100 01111222 334578888887546777777778899999
Q ss_pred eCCCCcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199 454 DVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 454 d~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
|+........+...-.....|++.|.++.++++-
T Consensus 187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td 220 (400)
T 3p5b_L 187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 220 (400)
T ss_dssp CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEE
T ss_pred eCCCCceEEEEeCCCCCcceEEEecccCeEEEEe
Confidence 9874433333333334578888888344444443
No 338
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=92.59 E-value=0.91 Score=42.14 Aligned_cols=102 Identities=9% Similarity=0.094 Sum_probs=64.0
Q ss_pred cEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 378 IVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 378 ~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
....| +|++. ++++-...+.|.+|++... ..+ .....+........++++++ ++++++....+.|.+||..
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~~----~~~~~~~~~~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDST-DKP----GEPEIFVEQTNIDDFAFDVE-GNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTT-SCB----CCCEEEEESCCCSSEEEBTT-CCEEEECBTTCCEEEECTT
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CCC----CccEEEeccCCCCCeEECCC-CCEEEEeCCCCeEEEECCC
Confidence 34555 77776 4556667789999998752 001 00111111134567889998 7887777778899999975
Q ss_pred CCcc--eeecccccCcEEEEEee---cCCCCeEEEeeC
Q 048199 457 TQQS--VMEYEEHEKRAWSVDFS---RTEPSMLVSGSD 489 (495)
Q Consensus 457 ~~~~--~~~~~~h~~~v~~v~~~---~~~g~~l~s~s~ 489 (495)
|+. +..+.......++++|. + ++..|+.++.
T Consensus 242 -G~~~~~~~~~~~~~~p~~~a~~g~~~-d~~~LyVt~~ 277 (306)
T 2p4o_A 242 -RSTTIIAQAEQGVIGSTAVAFGQTEG-DCTAIYVVTN 277 (306)
T ss_dssp -CCEEEEECGGGTCTTEEEEEECCSTT-TTTEEEEEEC
T ss_pred -CCEEEEeecccccCCceEEEEecccC-CCCEEEEECC
Confidence 654 32343333568899998 7 7666655544
No 339
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=92.54 E-value=0.69 Score=44.25 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=59.7
Q ss_pred CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec
Q 048199 387 DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY 464 (495)
Q Consensus 387 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~ 464 (495)
++..++.++.++.|..+|..++.. .-... ....+...... +..|+.++.+|.|.+||..+|+.+..+
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~--------~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVT--------LWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCE--------EEEECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCcE--------EEeecccCCCcccCCEEE---CCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 456777778899999999988721 11111 11112222222 457888999999999999999988776
Q ss_pred ccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 465 EEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 465 ~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
......+.+.... .+..|+.++.||.|.
T Consensus 345 ~~~~~~~~~~~~~--~~~~l~v~~~~G~l~ 372 (376)
T 3q7m_A 345 KVDSSGFQTEPVA--ADGKLLIQAKDGTVY 372 (376)
T ss_dssp ECCTTCBCSCCEE--ETTEEEEEBTTSCEE
T ss_pred ecCCCcceeCCEE--ECCEEEEEeCCCEEE
Confidence 6533333322111 235677888888775
No 340
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=92.54 E-value=1.8 Score=40.66 Aligned_cols=109 Identities=9% Similarity=-0.030 Sum_probs=66.7
Q ss_pred CcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEEEe
Q 048199 377 NIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd 454 (495)
....++++++ .+.++++-...+.|.+++++.. ...+...........++++|.++.++++-. ..+.|..++
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-------~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-------LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-------SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCC-------cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 3456899997 5666677777889999998764 111111133456789999997454444432 357888888
Q ss_pred CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
+. |.....+. ..-...+.|+|++.++.+.++-+..+.|
T Consensus 152 ~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I 190 (318)
T 3sov_A 152 MD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 190 (318)
T ss_dssp TT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred cC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEE
Confidence 76 44333332 2234568999998344444444444544
No 341
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=92.31 E-value=0.74 Score=43.07 Aligned_cols=101 Identities=7% Similarity=0.014 Sum_probs=61.8
Q ss_pred CcEEEEEEcc-CCCEEEEEeC-----------------CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCC
Q 048199 377 NIVSSIEFDR-DDQLFATAGV-----------------SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSK 438 (495)
Q Consensus 377 ~~V~~l~~~p-~~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 438 (495)
....++++++ +|++.++... ++.|..||..++ ............+.++|+|+ +
T Consensus 126 ~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~~~~~p~gia~~~d-g 196 (322)
T 2fp8_A 126 KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK--------ETTLLLKELHVPGGAEVSAD-S 196 (322)
T ss_dssp SCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT--------EEEEEEEEESCCCEEEECTT-S
T ss_pred cccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC--------EEEEeccCCccCcceEECCC-C
Confidence 3478899999 9988776533 356777777654 11111111123567999999 7
Q ss_pred CEE-EEecCCCcEEEEeCCCCc--ceeecccccCcEEEEEeecCCCCeEEEee
Q 048199 439 NRI-ASSDYEGIVTVWDVTTQQ--SVMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 439 ~~l-~sg~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
..| ++-..++.|.+||+.... ....+....+ ...+++.+ +|.++++..
T Consensus 197 ~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~ 247 (322)
T 2fp8_A 197 SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSS 247 (322)
T ss_dssp SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEec
Confidence 644 455667899999987421 1122211223 67788888 887666654
No 342
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=92.30 E-value=0.76 Score=42.97 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=65.8
Q ss_pred EEEEEEccCCCEE-EEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC----------C
Q 048199 379 VSSIEFDRDDQLF-ATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY----------E 447 (495)
Q Consensus 379 V~~l~~~p~~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~----------d 447 (495)
...|+|+|+++.| ++-...+.|.+|++..... .. ...... ..+ ...+++.++ +.++++... .
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~--~~-~~~~~~--~~g-P~gi~~d~~-G~l~va~~~~~~~~~~~~~~ 259 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK--GT-AEVLVK--IPN-PGNIKRNAD-GHFWVSSSEELDGNMHGRVD 259 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT--TC-EEEEEE--CSS-EEEEEECTT-SCEEEEEEEETTSSTTSCEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcC--Cc-cceEEe--CCC-CCCeEECCC-CCEEEEecCcccccccCCCc
Confidence 4578999999854 4556678999999875310 00 011111 223 788999998 776666544 4
Q ss_pred CcEEEEeCCCCcceeeccccc----CcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 448 GIVTVWDVTTQQSVMEYEEHE----KRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 448 g~v~iwd~~~~~~~~~~~~h~----~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
+.|..+|.. ++.+..+.... ..+.++++. ++.++++...++.|
T Consensus 260 ~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i 306 (322)
T 2fp8_A 260 PKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSV 306 (322)
T ss_dssp EEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEE
T ss_pred cEEEEECCC-CCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCce
Confidence 678888864 77766665432 346677763 66666665555554
No 343
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=92.23 E-value=1.5 Score=46.70 Aligned_cols=110 Identities=9% Similarity=-0.012 Sum_probs=68.3
Q ss_pred CCcEEEEEEccCC-CEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCC-CcEEEE
Q 048199 376 ANIVSSIEFDRDD-QLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYE-GIVTVW 453 (495)
Q Consensus 376 ~~~V~~l~~~p~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iw 453 (495)
.....+|++++.+ +++++-...+.|.+.+++.. ...+...........|+++|..+.++++-..+ +.|.+.
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~-------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC-------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 3456789999865 56667777889999999864 11112123344688999999845455554333 678888
Q ss_pred eCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
++. |.....+. ..-.+.+.|++.+.++.++++-.....|
T Consensus 543 ~~d-G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I 582 (791)
T 3m0c_C 543 GLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582 (791)
T ss_dssp ETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ecC-CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence 886 44444433 2335788899987344444444444444
No 344
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.14 E-value=0.62 Score=44.52 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=62.3
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEEecCC-----C
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF---SKNRIASSDYE-----G 448 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~sg~~d-----g 448 (495)
..-++++|.|+|+++++- .++.|.+++ ......+.. .+ ...........++|+|+ ++.++++-..+ +
T Consensus 31 ~~P~~ia~~pdG~l~V~e-~~g~I~~i~-~g~~~~~~~--~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAE-RPGRIRLFR-EGRLSTYAE--LS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEE-TTTEEEEEE-TTEEEEEEE--CC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEe-CCCeEEEEE-CCCccEeec--ce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 346799999999977664 568999998 221000000 01 11123456899999997 55555554433 5
Q ss_pred cEEEEeCCCCc-----c-eeecc---cccCcEEEEEeecCCCCeEEEee
Q 048199 449 IVTVWDVTTQQ-----S-VMEYE---EHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 449 ~v~iwd~~~~~-----~-~~~~~---~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
.|..|+...+. . +..+. +.......++|.| +|.++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 68888876431 1 11122 1112346899999 997777654
No 345
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=92.07 E-value=0.3 Score=45.59 Aligned_cols=101 Identities=9% Similarity=-0.055 Sum_probs=57.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
...+.++.+.+++.++ .++.++.|..||.. +. ...........+.++.+.++ +.+++ |+ +.|..||
T Consensus 136 ~~~~~~~~~~~~g~l~-vgt~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~d~~-g~l~v-~t--~~l~~~d- 201 (330)
T 3hxj_A 136 KAIYATPIVSEDGTIY-VGSNDNYLYAINPD-GT-------EKWRFKTNDAITSAASIGKD-GTIYF-GS--DKVYAIN- 201 (330)
T ss_dssp SCCCSCCEECTTSCEE-EECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTT-CCEEE-ES--SSEEEEC-
T ss_pred CceeeeeEEcCCCEEE-EEcCCCEEEEECCC-CC-------EeEEEecCCCceeeeEEcCC-CEEEE-Ee--CEEEEEC-
Confidence 3445666677777654 56678899999987 41 10011112233455566555 55444 43 7788888
Q ss_pred CCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 456 TTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 456 ~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.++..+..+......+.++.+.+ +|.+. .++.++.
T Consensus 202 ~~g~~~~~~~~~~~~~~~~~~~~-~g~l~-v~t~~~g 236 (330)
T 3hxj_A 202 PDGTEKWNFYAGYWTVTRPAISE-DGTIY-VTSLDGH 236 (330)
T ss_dssp TTSCEEEEECCSSCCCSCCEECT-TSCEE-EEETTTE
T ss_pred CCCcEEEEEccCCcceeceEECC-CCeEE-EEcCCCe
Confidence 66766655554445566677766 55443 3444443
No 346
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.96 E-value=1.6 Score=46.49 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=65.9
Q ss_pred CCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 375 SANIVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 375 h~~~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
....+.+|+|++ .+.++++-...+.|+.+++...... ......+. ....+..|++.+.+++++++-...+.|.+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~----~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v 497 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 497 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC----cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEE
Confidence 345678999998 4556667667788999988753100 01111121 33456678888775577777778889999
Q ss_pred EeCCCCcceeecc-cccCcEEEEEeecCCCCeEEEe
Q 048199 453 WDVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 453 wd~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
.|+. |.....+. ..-.....|++.|..|.++++-
T Consensus 498 ~~ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD 532 (791)
T 3m0c_C 498 ADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 532 (791)
T ss_dssp EETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred EeCC-CCeEEEEEeCCCCCcceEEEecCCCCEEEec
Confidence 9987 44444433 2334578899988345444443
No 347
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.69 E-value=0.064 Score=39.24 Aligned_cols=48 Identities=27% Similarity=0.555 Sum_probs=38.1
Q ss_pred CCCccccccccchhhhccccCC-CCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 49 LDKDMLCPICMQIIKEAFLTAC-GHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~Pv~l~C-GH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+-.-+.|-.|--..+. .+.| -|-+|..|+...+..+..||+|++++..
T Consensus 25 ~~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CSCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred ccCcccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 3445679988766662 3445 8999999999999999999999998753
No 348
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=91.51 E-value=0.86 Score=44.90 Aligned_cols=106 Identities=9% Similarity=0.123 Sum_probs=60.2
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC-CC----cEE
Q 048199 378 IVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY-EG----IVT 451 (495)
Q Consensus 378 ~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~-dg----~v~ 451 (495)
....|+|+| ++..|..+...+.|+.+|+... ..............++|+++ +..|+.+.. ++ .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--------~v~~~~~~~~~P~~ia~d~~-G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--------YVSTVYSGLSKVRTICWTHE-ADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT--------EEEEEECCCSCEEEEEECTT-SSEEEEEECCSCTTSEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC--------EEEEEecCCCCcceEEEeCC-CCEEEEEeCCCCcccceEE
Confidence 457899998 3444545444488999998775 11122234456899999999 775554443 22 233
Q ss_pred EEeCCCCcce--eecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 452 VWDVTTQQSV--MEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 452 iwd~~~~~~~--~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+++ ..+... ..+. .......++++|.++.++++-..++.|.
T Consensus 209 ~~~-~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~ 251 (430)
T 3tc9_A 209 ILT-RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVF 251 (430)
T ss_dssp EEE-GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred EEe-CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEE
Confidence 344 333222 2222 1234567888885566666655555553
No 349
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=91.33 E-value=0.86 Score=44.94 Aligned_cols=111 Identities=8% Similarity=0.052 Sum_probs=64.7
Q ss_pred CCcEEEEEEccCCCEEEEEeCC---Cc-EEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEE
Q 048199 376 ANIVSSIEFDRDDQLFATAGVS---RR-IKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVT 451 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d---~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~ 451 (495)
.....+|+|+++|+++++.... .. +..++..... ..............++++|+++.++++-..++.|.
T Consensus 181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~ 253 (433)
T 4hw6_A 181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF-------TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMIS 253 (433)
T ss_dssp CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT-------CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe-------eccccccccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence 4568899999999966555422 12 2223322220 00011112344577899995477777777788999
Q ss_pred EEeCCCCcceeeccc--ccCcEEEEEeecCCCC-eEEEeeCCCcEe
Q 048199 452 VWDVTTQQSVMEYEE--HEKRAWSVDFSRTEPS-MLVSGSDDCKVL 494 (495)
Q Consensus 452 iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~g~-~l~s~s~D~~v~ 494 (495)
.+|..++.....+.. ....-..++|+| ++. ++++-...+.|+
T Consensus 254 ~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 254 SYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIY 298 (433)
T ss_dssp EECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEE
T ss_pred EEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEE
Confidence 999887765222221 122335699999 887 445554555554
No 350
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=91.31 E-value=3.4 Score=37.31 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=71.6
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeee------cCCCCCeEEEEEcCCCCCEEEEecCCC
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVE------MPTRSKLSCLSWNKFSKNRIASSDYEG 448 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~p~~~~~l~sg~~dg 448 (495)
.+....+|+|+|.++.|.++.......||.++..... . ...+.. ...-..+.+++++|..+.+++.+....
T Consensus 119 ~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~-~--~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~ 195 (255)
T 3qqz_A 119 TNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS-N--ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESR 195 (255)
T ss_dssp CSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS-S--CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTT
T ss_pred ccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC-C--ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCC
Confidence 4566899999998877777766666677777621000 0 001110 012335789999999788888888888
Q ss_pred cEEEEeCCCCcceeec--c-cc------cCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 449 IVTVWDVTTQQSVMEY--E-EH------EKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 449 ~v~iwd~~~~~~~~~~--~-~h------~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
.|.++|.. |..+..+ . +. -..--.|+|.+ +|++.++ |.-..
T Consensus 196 ~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~ 245 (255)
T 3qqz_A 196 ALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNR 245 (255)
T ss_dssp EEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTE
T ss_pred eEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEE-cCCce
Confidence 99999965 5544433 2 11 12457899999 8886666 44333
No 351
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.17 E-value=0.31 Score=47.43 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=13.3
Q ss_pred CCCCC-CCCcCccCCCcchHHHHHHHHHHhH
Q 048199 87 SDCPC-CGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 87 ~~CP~-Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
.+||. ||-.-.+ +..+..+.+.|++++.
T Consensus 43 vkCPSGCrLQglL--dkqErDltkrINELKn 71 (562)
T 3ghg_A 43 YKCPSGCRMKGLI--DEVNQDFTNRINKLKN 71 (562)
T ss_dssp TEEECHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCcccchhhhH--HhhcCcHHHHHHHHHH
Confidence 36775 5433222 2234555555555544
No 352
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=90.98 E-value=1 Score=44.64 Aligned_cols=112 Identities=11% Similarity=0.120 Sum_probs=63.2
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccC-CCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEEecC------
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNE-PADVHCPVVEMPTRSKLSCLSWNKF---SKNRIASSDY------ 446 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~sg~~------ 446 (495)
..-++|+|.|+|+++++-...+.|++++...+... +...............+..++|+|+ ++.++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999998887655557888876543110 0000000000113457889999995 4655555432
Q ss_pred ------CCcEEEEeCCCC-------ccee-ecc-cccCcEEEEEeecCCCCeEEEeeC
Q 048199 447 ------EGIVTVWDVTTQ-------QSVM-EYE-EHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 447 ------dg~v~iwd~~~~-------~~~~-~~~-~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
...|.-|+...+ +.+. .+. +..+....|+|.| ||.++++.++
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 234555554321 1111 121 1123578899999 9988777654
No 353
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=90.69 E-value=1.2 Score=43.88 Aligned_cols=109 Identities=13% Similarity=0.017 Sum_probs=66.5
Q ss_pred EEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCC-EEEEecCCCcEEEEeCC
Q 048199 379 VSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKN-RIASSDYEGIVTVWDVT 456 (495)
Q Consensus 379 V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~sg~~dg~v~iwd~~ 456 (495)
...++++| ++.++++-..++.|+.+|..++.. ...+...........++|+|+ +. ++++-..++.|..+|..
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~-----~~~~~~~~~~~~~~~ia~dpd-G~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL-----TEEEVMMDTKGSNFHIVWHPT-GDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCE-----EEEEEECSCCSSCEEEEECTT-SSEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE-----EEEEeccCCCCCcccEEEeCC-CCEEEEEeCCCCEEEEEeCC
Confidence 45788999 777777777788899999875510 011112222233457999999 66 55666667899998865
Q ss_pred --CCcc--eeecccc---------------cCcEEEEEe---------ecCCCCeEEEeeCCCcEe
Q 048199 457 --TQQS--VMEYEEH---------------EKRAWSVDF---------SRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 457 --~~~~--~~~~~~h---------------~~~v~~v~~---------~~~~g~~l~s~s~D~~v~ 494 (495)
++.. ...+.+. -.....++| .. +|.++++-...++|+
T Consensus 304 ~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 304 RETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVR 368 (433)
T ss_dssp TTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEE
T ss_pred CCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEE
Confidence 2321 1122111 123567888 55 676777766666664
No 354
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=90.65 E-value=1.1 Score=47.29 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=35.2
Q ss_pred CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+|.|..||+.+|+.+-.+..+. +++...+.. .+.+++.|+.|+.|+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~gt~dg~l~ 499 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLST-AGNLVFEGSADGRVI 499 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEE
T ss_pred ceeEEEEECCCCCeEeEccCCC-CccCccceE-CCCEEEEECCCCcEE
Confidence 4789999999999888776543 334445565 677899999999886
No 355
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=90.40 E-value=2.1 Score=40.21 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=69.2
Q ss_pred EEEEEEccCCCEEEEEe-CCCcEEEEEccccccCCCCcCCCeeecCC-----C--CCeEEEEE---cCCCCCEEEEec--
Q 048199 379 VSSIEFDRDDQLFATAG-VSRRIKVFDFASVVNEPADVHCPVVEMPT-----R--SKLSCLSW---NKFSKNRIASSD-- 445 (495)
Q Consensus 379 V~~l~~~p~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-----~--~~i~~~~~---~p~~~~~l~sg~-- 445 (495)
--++.|++....|..++ ..++|..||...+. .....+.. . ..+..+.| .|+ +.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-------~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~ 86 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-------HFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA 86 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCC-------EEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-------EEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence 34788998555555554 79999999987540 11111211 1 13689999 688 77777543
Q ss_pred -----------CCCcEEEEeCC---CCcceeecc--ccc-----------CcEEEEEeecCCCCeEEEeeCC-CcE
Q 048199 446 -----------YEGIVTVWDVT---TQQSVMEYE--EHE-----------KRAWSVDFSRTEPSMLVSGSDD-CKV 493 (495)
Q Consensus 446 -----------~dg~v~iwd~~---~~~~~~~~~--~h~-----------~~v~~v~~~~~~g~~l~s~s~D-~~v 493 (495)
.+..|..||+. +++.+.... +.. .....++..+ +|+..++++.- +.|
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I 161 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAI 161 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeE
Confidence 26789999998 776654332 211 2478899999 99988888765 544
No 356
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=89.59 E-value=1.1 Score=41.67 Aligned_cols=104 Identities=9% Similarity=0.071 Sum_probs=63.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
...+.++.+++++.+.+ ++.++.+..+|.... ..... .....+.++.+.++ + .|+.|+.+|.|..+|
T Consensus 214 ~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~-g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 214 YWTVTRPAISEDGTIYV-TSLDGHLYAINPDGT---------EKWRFKTGKRIESSPVIGNT-D-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp SCCCSCCEECTTSCEEE-EETTTEEEEECTTSC---------EEEEEECSSCCCSCCEECTT-S-CEEEECTTCEEEEEC
T ss_pred CcceeceEECCCCeEEE-EcCCCeEEEECCCCC---------EeEEeeCCCCccccceEcCC-C-eEEEecCCCCEEEEC
Confidence 35577788887776554 555777877774332 11111 11122233445544 4 566777888999999
Q ss_pred CCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
. ++..+..+......+.++...+ +|. |..|+.+|.++
T Consensus 282 ~-~g~~~~~~~~~~~~~~~~~~d~-~g~-l~~gt~~G~~~ 318 (330)
T 3hxj_A 282 P-DGTEKWNFETGSWIIATPVIDE-NGT-IYFGTRNGKFY 318 (330)
T ss_dssp T-TSCEEEEEECSSCCCSCCEECT-TCC-EEEECTTSCEE
T ss_pred C-CCcEEEEEEcCCccccceEEcC-CCE-EEEEcCCCeEE
Confidence 5 6777666654455667777766 665 55677888775
No 357
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=89.43 E-value=2.9 Score=41.76 Aligned_cols=113 Identities=10% Similarity=0.030 Sum_probs=67.0
Q ss_pred CcEEEEEE-------ccCCCEEEEEeCCC-------cEEEEEccccccCCCC-c-CCCeeecCCCCCeEEEEEcCCCCCE
Q 048199 377 NIVSSIEF-------DRDDQLFATAGVSR-------RIKVFDFASVVNEPAD-V-HCPVVEMPTRSKLSCLSWNKFSKNR 440 (495)
Q Consensus 377 ~~V~~l~~-------~p~~~~l~s~s~d~-------~i~vwd~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~p~~~~~ 440 (495)
.....|+| ++++..|+.+.... .|.+++.... ..+.. . ...+..+ ...+.++++|+++.+
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~-G~~~~~~~~~~v~~~---~~p~giavdp~~g~L 261 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD-GTFDDRSDIQLIAAY---KQCNGATIHPINGEL 261 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT-SCCSTTSCEEEEEEE---SCCCCEEECTTTCCE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC-CceeecccceeeccC---CCceEEEEcCCCCeE
Confidence 35899999 99998555554432 2555553331 01110 0 0111122 234678899975777
Q ss_pred EEEecCCCcEEEEeCC-------CCcc-----------eeecc--cccCcEEEEEeecCCCCe-EEEeeCCCcEe
Q 048199 441 IASSDYEGIVTVWDVT-------TQQS-----------VMEYE--EHEKRAWSVDFSRTEPSM-LVSGSDDCKVL 494 (495)
Q Consensus 441 l~sg~~dg~v~iwd~~-------~~~~-----------~~~~~--~h~~~v~~v~~~~~~g~~-l~s~s~D~~v~ 494 (495)
+++-..++.|..+|+. ++.. ...+. +...+.+.|+|+| +|.+ +++-+....|+
T Consensus 262 Yvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~ 335 (496)
T 3kya_A 262 YFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINNHYFM 335 (496)
T ss_dssp EEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEE
T ss_pred EEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCCCCEEE
Confidence 8888888899999987 5543 11211 1234568999999 8884 55555555554
No 358
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=89.34 E-value=1.9 Score=41.07 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=60.5
Q ss_pred cEEEEEEccCCC-EEEEEeCCCcEEEEEccccccC-CCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEEecC------
Q 048199 378 IVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNE-PADVHCPVVEMPTRSKLSCLSWNKF---SKNRIASSDY------ 446 (495)
Q Consensus 378 ~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~sg~~------ 446 (495)
.-+.|+|.|+|+ ++++- ..+.|++++....... +.. .+.........+..++|+|+ ++.++++-..
T Consensus 19 ~P~~i~~~pdG~~l~V~e-~~G~i~~~~~~g~~~~~~~~--~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITL-RGGELRHWQAGKGLSAPLSG--VPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECSTTCCEEEEE-TTTEEEEEETTTEECCCCBS--CCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcCCCCEEEEEe-CCceEEEEeCCCceeeEecC--CcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 467999999999 66554 5789999985432111 111 11111123456889999995 4655555332
Q ss_pred -CCcEEEEeCCCC--c--ce----eecc---cccCcEEEEEeecCCCCeEEEeeC
Q 048199 447 -EGIVTVWDVTTQ--Q--SV----MEYE---EHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 447 -dg~v~iwd~~~~--~--~~----~~~~---~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
...|..|+...+ . .. ..+. ........+.|.| ||.++++.++
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd 149 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGE 149 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECC
Confidence 235666665432 1 11 1111 1112245799999 9876666543
No 359
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=89.20 E-value=7.6 Score=36.20 Aligned_cols=108 Identities=6% Similarity=-0.005 Sum_probs=62.6
Q ss_pred CCcEEEEEEccCCC-EEEEE-eCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 376 ANIVSSIEFDRDDQ-LFATA-GVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 376 ~~~V~~l~~~p~~~-~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
.....+|+++|.+. ++.+- +....|..++++.. .........-...+.++|+++++.++++-...+.|..+
T Consensus 121 ~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-------~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 121 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-------SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-------SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-------CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 34568999998644 44444 23577887777653 11111112234578999999856666666677889999
Q ss_pred eCCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
|+. |.....+. +......++++.. +.++.+....+.|
T Consensus 194 d~d-G~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V 231 (318)
T 3sov_A 194 NLD-GTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSI 231 (318)
T ss_dssp ETT-SCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEE
T ss_pred cCC-CCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeE
Confidence 986 33333332 2334456666643 3444454444444
No 360
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=89.16 E-value=0.55 Score=48.22 Aligned_cols=47 Identities=6% Similarity=0.123 Sum_probs=32.0
Q ss_pred CCEEEEecCCCcEEEEeCCCCcceeecccccCc-EEEEEeecCCCCeEE
Q 048199 438 KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKR-AWSVDFSRTEPSMLV 485 (495)
Q Consensus 438 ~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~~g~~l~ 485 (495)
+..++.++.||.|..||.++|+.+..+...... -.-+.|.. +|..++
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~-~G~~yv 522 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF-KGKQYI 522 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEE-CCEEEE
Confidence 557777999999999999999998887643211 11233445 665443
No 361
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=89.02 E-value=1.2 Score=42.43 Aligned_cols=107 Identities=12% Similarity=0.022 Sum_probs=62.0
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEEecC---C---
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF---SKNRIASSDY---E--- 447 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~sg~~---d--- 447 (495)
..-++|+|.|+|+++++- .++.|+++|. .+...+.. .+ ...........++|+|+ ++.++++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e-~~g~I~~~d~-~G~~~~~~--~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTE-RPGRLVLISP-SGKKLVAS--FD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEE-TTTEEEEECS-SCEEEEEE--CC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEe-CCCEEEEEeC-CCceEeec--cc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 457899999999866664 5689998873 33100000 00 01123356899999997 5655555432 3
Q ss_pred -CcEEEEeCCCC--c-----ce-eeccc-ccCcEEEEEeecCCCCeEEEeeC
Q 048199 448 -GIVTVWDVTTQ--Q-----SV-MEYEE-HEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 448 -g~v~iwd~~~~--~-----~~-~~~~~-h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
..|..|+.... . .+ ..+.. .......++|.| +|.++++.+.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~ 154 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGD 154 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECC
Confidence 56777776543 1 11 11221 112346799999 9987777543
No 362
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=88.55 E-value=6.8 Score=40.55 Aligned_cols=103 Identities=11% Similarity=0.019 Sum_probs=65.5
Q ss_pred CCcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC-CCCCeEEEEEcCCCCCEEEEecCCCcEEEE
Q 048199 376 ANIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP-TRSKLSCLSWNKFSKNRIASSDYEGIVTVW 453 (495)
Q Consensus 376 ~~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~sg~~dg~v~iw 453 (495)
...+.+|+|++. +.++.+-..++.|..++++.. ....... ....+..+++++.+++++++-...+.|.+.
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~--------~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~ 107 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGS--------ALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVS 107 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--------SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCC--------CcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEE
Confidence 345789999985 455666667889999988764 1111111 123466788877656677777778899999
Q ss_pred eCCCCcceeecc-cccCcEEEEEeecCCCCeEEEe
Q 048199 454 DVTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 454 d~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
|.... ....+. ..-.....|++.|.+|.+++|-
T Consensus 108 ~~dG~-~~~~l~~~~l~~P~~iavdp~~G~lY~tD 141 (628)
T 4a0p_A 108 KLDGQ-HRQVLVWKDLDSPRALALDPAEGFMYWTE 141 (628)
T ss_dssp ETTST-TCEEEECSSCCCEEEEEEETTTTEEEEEE
T ss_pred ecCCC-cEEEEEeCCCCCcccEEEccCCCeEEEeC
Confidence 98643 333332 3334568899998455544443
No 363
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=88.46 E-value=0.59 Score=49.33 Aligned_cols=108 Identities=9% Similarity=-0.008 Sum_probs=63.9
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCC-CcEEEEe
Q 048199 378 IVSSIEFDR-DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYE-GIVTVWD 454 (495)
Q Consensus 378 ~V~~l~~~p-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~d-g~v~iwd 454 (495)
....|++++ .++++++-...+.|.++++... .....+ ........++++|.++.++++-... +.|.+++
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~--------~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSC--------CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCC--------ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 356788885 5566666667889999998764 111111 1223467889999745555554333 7888888
Q ss_pred CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+. |.....+. ..-...+.|+|++.++.++++-+..+.|.
T Consensus 526 ~d-G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 526 LN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp SS-SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred CC-CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 75 33332222 22345678999983455555555555553
No 364
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=88.42 E-value=10 Score=35.35 Aligned_cols=108 Identities=7% Similarity=0.086 Sum_probs=62.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 375 SANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 375 h~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
+...+.++.+.|++.+++.+.....++-+|-... . -.+ ........+..+.+.++ +.+++.+ .+|.+.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~--t----W~~-~~~~~~~~~~~~~~~~~-g~~~~~~-~~G~~~~s~ 231 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQT--A----WEP-HNRTTSRRLHNMGFTPD-GRLWMIV-NGGKIAFSD 231 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCS--S----CEE-EECCSSSCEEEEEECTT-SCEEEEE-TTTEEEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCC--c----eeE-CCCCCCCccceeEECCC-CCEEEEe-CCceEEEec
Confidence 3457889999998888876654433333332111 0 011 12233456889999888 6655544 578888775
Q ss_pred CCCCcceeecc----cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 455 VTTQQSVMEYE----EHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 455 ~~~~~~~~~~~----~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
...|..-..+. .+...+..+.|.+ ++.+++.+. ++.|
T Consensus 232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 232 PDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL 272 (327)
T ss_dssp TTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE
T ss_pred CCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE
Confidence 33233222221 1233588899987 777666654 5544
No 365
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=87.85 E-value=0.61 Score=48.00 Aligned_cols=45 Identities=7% Similarity=0.202 Sum_probs=32.5
Q ss_pred CCEEEEecCCCcEEEEeCCCCcceeecccccCcE-EEEEeecCCCCe
Q 048199 438 KNRIASSDYEGIVTVWDVTTQQSVMEYEEHEKRA-WSVDFSRTEPSM 483 (495)
Q Consensus 438 ~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v-~~v~~~~~~g~~ 483 (495)
+.+++.|+.||.++.||.++|+.+-.+......+ .-+.|.. +|..
T Consensus 497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~-~G~q 542 (582)
T 1flg_A 497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ-DGEQ 542 (582)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEE
T ss_pred CCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEE-CCEE
Confidence 5678889999999999999999998887543221 1245555 6653
No 366
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=87.80 E-value=0.55 Score=33.93 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=27.8
Q ss_pred cccccccchhhh--ccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 53 MLCPICMQIIKE--AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 53 l~C~IC~~~~~~--Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
..|..|...+.- |....||.+||..= ++. ..-.|+.--+...
T Consensus 26 ~rC~~C~kkvgl~~~f~CrCg~~FC~~H--Ry~-e~H~C~fDyK~~g 69 (85)
T 1wff_A 26 KHCFLCGKKTGLATSFECRCGNNFCASH--RYA-EAHGCNYDYKSAG 69 (85)
T ss_dssp CBCSSSCCBCSSSSCEECTTCCEECTTT--CST-GGGTCCSCCSSSC
T ss_pred ccchhhCCeecccCCeEcCCCCEecccC--CCc-cCCCCcchhhHHH
Confidence 469999986654 88889999999852 222 2235776544333
No 367
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=87.13 E-value=5.4 Score=37.79 Aligned_cols=112 Identities=9% Similarity=-0.004 Sum_probs=64.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCC---CCCEEEE--ecCCCcE
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKF---SKNRIAS--SDYEGIV 450 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~s--g~~dg~v 450 (495)
-..-+.|+|.|+|.+|++--..+.|++++...+...... ..+............++|+|+ ++.++++ ...++.|
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~-~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELG-EVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeec-ccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 455789999999998888766899999986544110000 000011224557899999995 3444333 2234456
Q ss_pred EEEeCCCCc--------c---eeecc-cccCcEEEEEeecCCCCeEEEeeC
Q 048199 451 TVWDVTTQQ--------S---VMEYE-EHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 451 ~iwd~~~~~--------~---~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.-|....+. . +..+. +..+....|.|.| ||.++++.++
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd 159 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGE 159 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECC
Confidence 666554311 1 11121 1122345799999 9988887654
No 368
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=87.09 E-value=3.6 Score=42.80 Aligned_cols=99 Identities=6% Similarity=0.025 Sum_probs=60.0
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------cEEEEEccccccCCCCcCCCeeec--CCCCCeEEEEEcCCCCCEEEEecC
Q 048199 381 SIEFDR-DDQLFATAGVSR-----------RIKVFDFASVVNEPADVHCPVVEM--PTRSKLSCLSWNKFSKNRIASSDY 446 (495)
Q Consensus 381 ~l~~~p-~~~~l~s~s~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~sg~~ 446 (495)
..++.| ++++++.||.+. .+.+||..++. . ..+..+ .+.....++++..+ +.+++.|+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-----w-~~~~~~~~~~~~~~~~~~~~~~-g~lyv~GG~ 262 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-----V-SDRTVTVTKHDMFCPGISMDGN-GQIVVTGGN 262 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-----B-CCCEEEECSCCCSSCEEEECTT-SCEEEECSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-----E-EeCcccCCCCCCccccccCCCC-CCEEEeCCC
Confidence 556777 888888887653 57889988751 1 111111 22223345677777 778888874
Q ss_pred -CCcEEEEeCCCCcc--eeecccccCcEEEEEeecCCCCeEEEee
Q 048199 447 -EGIVTVWDVTTQQS--VMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 447 -dg~v~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
+..+.+||..+..- +..+.... .-.++++.+ ++.+++.|+
T Consensus 263 ~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~-dg~iyv~GG 305 (656)
T 1k3i_A 263 DAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMS-DGRVFTIGG 305 (656)
T ss_dssp STTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECT-TSCEEEECC
T ss_pred CCCceEEecCcCCceeECCCCCccc-cccceEEec-CCeEEEEeC
Confidence 45899999876532 22222111 123445556 888999988
No 369
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=87.07 E-value=0.78 Score=48.39 Aligned_cols=107 Identities=10% Similarity=0.039 Sum_probs=60.2
Q ss_pred CcEEEEEEccCCC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeec-CCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 377 NIVSSIEFDRDDQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-PTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
..+.+|+|++.+. ++++-...+.|+.+++...... ......+ .....+..+++.+.++.++++-...+.|.++|
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~----~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d 481 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 481 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC----cceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence 4466889998655 4555556788999998752000 0011111 11123456788765466667766778999999
Q ss_pred CCCCcceeecccccCcEEEEEeecCCCCeEEEe
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
.........+.........|++.|.++.++++.
T Consensus 482 ~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td 514 (699)
T 1n7d_A 482 TKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTD 514 (699)
T ss_dssp SSSCCEEEECCCSSCCCCCEECCSSSSCCEECC
T ss_pred cCCCceEEEEeCCCCCcceEEEccCCCcEEEcc
Confidence 874432222222223456788887344444443
No 370
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=86.98 E-value=3.9 Score=28.44 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048199 182 VDELKEIQTDLHYIKEDINAVERHRIDLYRARDRY 216 (495)
Q Consensus 182 ~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 216 (495)
.+++.+.+..++.++..+.+.+..+.+|+..+++.
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444446666666777777777777666654
No 371
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=86.96 E-value=4.6 Score=38.33 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=55.9
Q ss_pred CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199 388 DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH 467 (495)
Q Consensus 388 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h 467 (495)
+..++.++.++.+..+|..++ ...-... ......+... +..++.++.++.|..||..+|+.+......
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG--------~~~w~~~-~~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~ 306 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSG--------QIMWKRE-LGSVNDFIVD---GNRIYLVDQNDRVMALTIDGGVTLWTQSDL 306 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTC--------CEEEEEC-CCCEEEEEEE---TTEEEEEETTCCEEEEETTTCCEEEEECTT
T ss_pred CCEEEEEecCcEEEEEECCCC--------cEEeecc-CCCCCCceEE---CCEEEEEcCCCeEEEEECCCCcEEEeeccc
Confidence 456677778999999999887 1111111 1234444444 557888888999999999999876655421
Q ss_pred -cCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 468 -EKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 468 -~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
...+...... +..|+.++.+|.|.
T Consensus 307 ~~~~~~~~~~~---~~~l~v~~~~g~l~ 331 (376)
T 3q7m_A 307 LHRLLTSPVLY---NGNLVVGDSEGYLH 331 (376)
T ss_dssp TTSCCCCCEEE---TTEEEEECTTSEEE
T ss_pred CCCcccCCEEE---CCEEEEEeCCCeEE
Confidence 1122222222 24566666666553
No 372
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=86.79 E-value=11 Score=40.13 Aligned_cols=108 Identities=7% Similarity=0.017 Sum_probs=67.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEcccccc-CCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVN-EPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
...|.++..++++++|..|..++-|.+||..++.. .+.. ..+ ......|.++...++ +.+++.. . +-|.+||
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~-~~~---~l~~~~v~~i~~d~~-g~lwigt-~-~Gl~~~~ 477 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ-RNS---QLVNENVYAILPDGE-GNLWLGT-L-SALVRFN 477 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT-TTS---CCSCSCEEEEEECSS-SCEEEEE-S-SCEEEEE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec-CCC---CcCCCeeEEEEECCC-CCEEEEe-c-CceeEEe
Confidence 35799999998888455667777799999876510 0000 000 012356899998887 6655544 3 4588899
Q ss_pred CCCCcceeeccc------ccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 455 VTTQQSVMEYEE------HEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 455 ~~~~~~~~~~~~------h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
..++........ ....|.++...+ +|.+.+.+. +|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~-~Gl 519 (795)
T 4a2l_A 478 PEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGGE-EGL 519 (795)
T ss_dssp TTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEES-SCE
T ss_pred CCCCeEEEccccccccccCCceEEEEEECC-CCCEEEEeC-Cce
Confidence 877643322111 235788888887 777666554 553
No 373
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=86.77 E-value=5.7 Score=37.76 Aligned_cols=103 Identities=8% Similarity=-0.043 Sum_probs=62.1
Q ss_pred CcEEEEEEccCCCEEEEEeC---C------------CcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCE-
Q 048199 377 NIVSSIEFDRDDQLFATAGV---S------------RRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNR- 440 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~---d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~- 440 (495)
....++.+.++|.+.++... | ..=+||.++.+ ........-...+.++|+|| +..
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--------~~~~~~~~l~~pNGia~spD-g~~l 235 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--------DVRVVAEGFDFANGINISPD-GKYV 235 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--------CCEEEEEEESSEEEEEECTT-SSEE
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--------eEEEeecCCcccCcceECCC-CCEE
Confidence 45789999999998877652 1 22344444332 11111122245789999999 654
Q ss_pred EEEecCCCcEEEEeCCC-Ccc--eeecccccCcEEEEEeecCC-CCeEEEeeCC
Q 048199 441 IASSDYEGIVTVWDVTT-QQS--VMEYEEHEKRAWSVDFSRTE-PSMLVSGSDD 490 (495)
Q Consensus 441 l~sg~~dg~v~iwd~~~-~~~--~~~~~~h~~~v~~v~~~~~~-g~~l~s~s~D 490 (495)
+++-+..+.|..||+.. +.. ...+ ...+....+++.+ + |.+.+++..+
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~-e~G~lwva~~~~ 287 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDP-VTGDLWVGCHPN 287 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECT-TTCCEEEEEESC
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeC-CCCcEEEEecCC
Confidence 45555678999999863 321 2233 2245567778876 4 7777766544
No 374
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=86.57 E-value=0.25 Score=37.33 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=20.2
Q ss_pred hccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 64 EAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 64 ~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
.|....||++|+ .-+.....||.|+..-.
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 456778999992 23344579999997643
No 375
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.45 E-value=6.1 Score=37.00 Aligned_cols=8 Identities=38% Similarity=1.352 Sum_probs=5.2
Q ss_pred CCCCCC-CC
Q 048199 86 KSDCPC-CG 93 (495)
Q Consensus 86 ~~~CP~-Cr 93 (495)
..+||. ||
T Consensus 45 G~kCPsGCr 53 (390)
T 1deq_A 45 NTKCPSGCR 53 (390)
T ss_pred cCCCCccch
Confidence 358997 54
No 376
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=86.37 E-value=10 Score=40.25 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=68.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccc-cCCCCcCCCee-e-cCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVV-NEPADVHCPVV-E-MPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~-~-~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
...|.++..+++|++.+ |..++-|..||..++. ..+.. .... . ......|.++...++ +.+|..|+.++-|.+
T Consensus 356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~--~~~~~~~~l~~~~v~~i~~d~~-g~~lWigt~~~Gl~~ 431 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTL--QEDESARGIGSNNIKAVYVDEK-KSLVYIGTHAGGLSI 431 (795)
T ss_dssp CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECC--C------CCSCSCEEEEEEETT-TTEEEEEETTTEEEE
T ss_pred CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEec--CCCCcccCCCCccEEEEEEcCC-CCEEEEEeCcCceeE
Confidence 45699999998887664 5667678999887641 00000 0000 0 012356889988877 764666777778999
Q ss_pred EeCCCCcceeecc----cccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 453 WDVTTQQSVMEYE----EHEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 453 wd~~~~~~~~~~~----~h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
||..++....-.. -+...|+++...+ +|.+.+... +|.
T Consensus 432 ~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~-~Gl 473 (795)
T 4a2l_A 432 LHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL-SAL 473 (795)
T ss_dssp EETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES-SCE
T ss_pred EeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec-Cce
Confidence 9988765332211 1245788888877 776555443 553
No 377
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=86.29 E-value=0.82 Score=47.96 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=40.1
Q ss_pred CCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeecccc
Q 048199 397 SRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEYEEH 467 (495)
Q Consensus 397 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~~~h 467 (495)
++.|..||+.++.. +-........+...+... +.+++.|+.||.|++||.++|+.+..+...
T Consensus 437 ~g~l~A~D~~tG~~--------~W~~~~~~~~~~~~~~t~-gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKA--------AWKVPYPTHWNGGTLSTA-GNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEE--------EEEEEESSSCCCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEeCCCCcE--------EEEccCCCCCcCceeEeC-CCEEEEECCcccchhhhhhcChhheEecCC
Confidence 47788888887611 111111112222223334 678888999999999999999998888654
No 378
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=86.13 E-value=2.8 Score=40.75 Aligned_cols=78 Identities=13% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec---CCCCCeEEEEEcCCCCCEEEEec--C
Q 048199 375 SANIVSSIEFDR---DDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM---PTRSKLSCLSWNKFSKNRIASSD--Y 446 (495)
Q Consensus 375 h~~~V~~l~~~p---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~sg~--~ 446 (495)
....|..+.||| .+..|++-..|++||+||+................+ .....|.+++|.++ +..|+..+ .
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~-~lTLYvl~~t~ 201 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKD-GLTLYCLNTTE 201 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTT-SSCEEEEECTT
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCC-CcEEEEEecCC
Confidence 367899999999 456788888899999999987421111111111111 12256889999997 77777744 7
Q ss_pred CCcEEEE
Q 048199 447 EGIVTVW 453 (495)
Q Consensus 447 dg~v~iw 453 (495)
+|-|.-.
T Consensus 202 ~GDIYAl 208 (452)
T 3pbp_A 202 GGDIFAF 208 (452)
T ss_dssp SCEEEEE
T ss_pred CCCEEEE
Confidence 7877543
No 379
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=86.01 E-value=10 Score=39.09 Aligned_cols=103 Identities=10% Similarity=0.007 Sum_probs=65.6
Q ss_pred CcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 377 NIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 377 ~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
..+.+|+|++. +.++++-...+.|..++.+.. .........-..+..+++...+++++++-...+.|.+.+.
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~-------~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~ 421 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS-------GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSC-------SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC-------ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence 45789999984 556666666888999988764 1111111222356678887654667777777889999998
Q ss_pred CCCcceeecc-cccCcEEEEEeecCCCCeEEEe
Q 048199 456 TTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 456 ~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
.. .....+. ..-...++|++.|.+|.+++|-
T Consensus 422 ~G-~~~~~l~~~~l~~P~~iavdp~~G~ly~tD 453 (619)
T 3s94_A 422 NG-TMRKILISEDLEEPRAIVLDPMVGYMYWTD 453 (619)
T ss_dssp TS-CSCEEEECTTCCSEEEEEEETTTTEEEEEE
T ss_pred CC-CeEEEEEECCCCCeeeEEEEcCCCcEEEec
Confidence 74 3333333 2334678899988445555553
No 380
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=85.28 E-value=9.8 Score=39.26 Aligned_cols=109 Identities=9% Similarity=-0.046 Sum_probs=66.3
Q ss_pred CcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecC-CCcEEEEe
Q 048199 377 NIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDY-EGIVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~-dg~v~iwd 454 (495)
....+|++++. ++++++-...+.|.+.+++.. ...+...........++++|..+.++++-.. .+.|...+
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-------~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~ 156 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-------LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 156 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-------SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-------CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEE
Confidence 56889999984 556667777899999999865 1111211333457789999984544444322 45677777
Q ss_pred CCCCcceeecc-cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 455 VTTQQSVMEYE-EHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 455 ~~~~~~~~~~~-~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
+. |.....+. ..-...+.|++.+.++.++++-+..+.|
T Consensus 157 ~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I 195 (619)
T 3s94_A 157 MD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195 (619)
T ss_dssp TT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred CC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence 65 44433332 2345678899998334444444444444
No 381
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=85.15 E-value=11 Score=38.85 Aligned_cols=108 Identities=11% Similarity=0.010 Sum_probs=66.4
Q ss_pred CcEEEEEEccC-CCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEec-CCCcEEEEe
Q 048199 377 NIVSSIEFDRD-DQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSD-YEGIVTVWD 454 (495)
Q Consensus 377 ~~V~~l~~~p~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~-~dg~v~iwd 454 (495)
....+|++++. ++++++-...+.|.+.+++.. ...+...........++++|..+.++++-. ..+.|...+
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~-------~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~ 152 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ-------HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 152 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTST-------TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCC-------cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence 34678999875 556667777889999998764 111111133456799999997455444432 256788888
Q ss_pred CCCCcceeecccccCcEEEEEeecCCCCeE-EEeeCCCcE
Q 048199 455 VTTQQSVMEYEEHEKRAWSVDFSRTEPSML-VSGSDDCKV 493 (495)
Q Consensus 455 ~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l-~s~s~D~~v 493 (495)
+. |.....+...-...+.|++.+ ++..| ++-+..+.|
T Consensus 153 ~d-G~~~~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~I 190 (628)
T 4a0p_A 153 MD-GSERTTLVPNVGRANGLTIDY-AKRRLYWTDLDTNLI 190 (628)
T ss_dssp TT-SCSCEEEECSCSSEEEEEEET-TTTEEEEEETTTTEE
T ss_pred CC-CCceEEEECCCCCcceEEEcc-ccCEEEEEECCCCEE
Confidence 76 444444433445678899988 54444 443344444
No 382
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=85.08 E-value=5.5 Score=28.55 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 172 DFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYR 211 (495)
Q Consensus 172 ~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~ 211 (495)
+.|..+++.+.+++..-..+|+.+++.|...+..+.+|..
T Consensus 40 EqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 40 EQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555566666666667777777777777777777664
No 383
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.90 E-value=11 Score=28.65 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048199 165 RNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARD 214 (495)
Q Consensus 165 ~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~~ 214 (495)
.....|+.-|++...+....+++++.+|..|+.+++....+++.|++...
T Consensus 53 qTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 53 HTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 34456666666666666666777777777777777777777777765543
No 384
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.51 E-value=10 Score=37.54 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=60.6
Q ss_pred cEEEEEEccCCC--EEEEEeCCCcEEEEEcccccc--CCCCcCCCeee---cCCCCCeEEEEEcCC---CCCEEEEecC-
Q 048199 378 IVSSIEFDRDDQ--LFATAGVSRRIKVFDFASVVN--EPADVHCPVVE---MPTRSKLSCLSWNKF---SKNRIASSDY- 446 (495)
Q Consensus 378 ~V~~l~~~p~~~--~l~s~s~d~~i~vwd~~~~~~--~~~~~~~~~~~---~~~~~~i~~~~~~p~---~~~~l~sg~~- 446 (495)
.-+.|+|.|++. +|+ +...+.|++++...... .+......+.. ......+..|+|+|+ ++.++++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 467999999986 554 45689999997543210 11111111110 012457889999996 3334443221
Q ss_pred -C----------CcEEEEeCCCC----------cceeecc--cccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 447 -E----------GIVTVWDVTTQ----------QSVMEYE--EHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 447 -d----------g~v~iwd~~~~----------~~~~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
+ ..|.-|.+..+ +.+..+. ........|.|.| ||.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCC
Confidence 1 13444554321 1122221 1123467899999 998887776543
No 385
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=83.09 E-value=0.28 Score=45.66 Aligned_cols=46 Identities=20% Similarity=0.478 Sum_probs=36.5
Q ss_pred CCccccccccchhhhcccc----CCC--CccchhhHHhhhcCCCCCCCCCCc
Q 048199 50 DKDMLCPICMQIIKEAFLT----ACG--HSFCYMCIITHLRNKSDCPCCGHY 95 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l----~CG--H~FC~~Ci~~~~~~~~~CP~Cr~~ 95 (495)
...-.||||+....--++. .=| |.+|..|-..|--....||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4457899999998766554 245 678999999998777899999986
No 386
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=83.07 E-value=0.23 Score=35.60 Aligned_cols=41 Identities=22% Similarity=0.585 Sum_probs=28.7
Q ss_pred cccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+.||.|...+.- .=++.+|..|-..+.... .||.|++++..
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~~a-fCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFSLQA-LCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEEEEE-ECSSSCSCCCE
T ss_pred CCCCCCCCcccc----CCCceECccccccCCCcc-cCcchhhHHHH
Confidence 679999877652 123555888877765555 89999988754
No 387
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=82.75 E-value=5.1 Score=24.34 Aligned_cols=33 Identities=6% Similarity=0.374 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 180 QKVDELKEIQTDLHYIKEDINAVERHRIDLYRA 212 (495)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~ 212 (495)
++.+.++.+.+++..-+++|.+++.++.+|++.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777777777777777777654
No 388
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=82.53 E-value=0.42 Score=33.68 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=14.4
Q ss_pred CCCCCCCCcCccCCCcch
Q 048199 87 SDCPCCGHYLTNNQLYPN 104 (495)
Q Consensus 87 ~~CP~Cr~~~~~~~l~~n 104 (495)
.+||.|++.+--+.|+.+
T Consensus 52 FkCP~CgEEFyG~~Lp~~ 69 (95)
T 2k5c_A 52 FKCPVCGEEFYGKTLPRR 69 (95)
T ss_dssp EECTTTCCEEETTSSCTT
T ss_pred hcCCCccHHHhcccCChH
Confidence 589999999877777654
No 389
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.52 E-value=1.9 Score=31.83 Aligned_cols=47 Identities=21% Similarity=0.573 Sum_probs=29.8
Q ss_pred CCCCccccccccchhhhccccC-----CC-CccchhhHHhhhc--CCCCCCCCCCcC
Q 048199 48 ELDKDMLCPICMQIIKEAFLTA-----CG-HSFCYMCIITHLR--NKSDCPCCGHYL 96 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~Pv~l~-----CG-H~FC~~Ci~~~~~--~~~~CP~Cr~~~ 96 (495)
+..+...| ||....... ++. |. .-|+..|+.--.. ....||.|+...
T Consensus 32 d~~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 33567889 999976543 443 54 4688888862111 224799998654
No 390
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=82.52 E-value=10 Score=37.81 Aligned_cols=76 Identities=5% Similarity=-0.059 Sum_probs=47.9
Q ss_pred EEEEEEcc-CCCEEEEEeCCCcEEEEEcc-------cccc------CCCCcCCCeeecCCCCCeEEEEEcCCCCCE-EEE
Q 048199 379 VSSIEFDR-DDQLFATAGVSRRIKVFDFA-------SVVN------EPADVHCPVVEMPTRSKLSCLSWNKFSKNR-IAS 443 (495)
Q Consensus 379 V~~l~~~p-~~~~l~s~s~d~~i~vwd~~-------~~~~------~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~-l~s 443 (495)
...++++| ++.++++-..++.|..||+. ++.. ........+.........+.++|+|+ +.+ +++
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~-G~~lYva 327 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPT-GKYAYFG 327 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTT-SSEEEEE
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCC-CCEEEEE
Confidence 34778899 56677777788889999998 4411 00000011223333455789999999 774 555
Q ss_pred ecCCCcEEEEeC
Q 048199 444 SDYEGIVTVWDV 455 (495)
Q Consensus 444 g~~dg~v~iwd~ 455 (495)
-..+..|+.+|.
T Consensus 328 D~~~h~I~kid~ 339 (496)
T 3kya_A 328 VINNHYFMRSDY 339 (496)
T ss_dssp ETTTTEEEEEEE
T ss_pred eCCCCEEEEEec
Confidence 566778998664
No 391
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=82.02 E-value=0.18 Score=37.16 Aligned_cols=41 Identities=29% Similarity=0.616 Sum_probs=30.0
Q ss_pred cccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+.||+|...+.- .=|+.+|..|-..+. ....||.|.+++..
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~-~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIE-MKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEE-EEEECTTTCSBCEE
T ss_pred ccCccCCCccee----cCCEEECccccchhh-ccccCcchhhHHHH
Confidence 789999987652 135556999977643 34679999999864
No 392
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=81.54 E-value=0.2 Score=29.44 Aligned_cols=16 Identities=31% Similarity=0.796 Sum_probs=10.5
Q ss_pred Cccccccccchhhhcc
Q 048199 51 KDMLCPICMQIIKEAF 66 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv 66 (495)
+.+.||||+..+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3467777777776653
No 393
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=81.25 E-value=2.8 Score=42.86 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=30.7
Q ss_pred CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 446 YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+|.|..||..+|+.+-.+.. ...+.+..+.. .+.+++.++.|+.|+
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t-~gg~v~~g~~dg~l~ 488 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYT-KGGLVWYATLDGYLK 488 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEE-TTTEEEEECTTSEEE
T ss_pred CCCeEEEEECCCCCEEEEecC-CCCccceeEEE-CCCEEEEEcCCCeEE
Confidence 357899999999988776653 22333333333 456677788888775
No 394
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=80.72 E-value=24 Score=32.66 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=56.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
+.+..|.+.+++..++.+. ++.|.. ..+.+ .. -..........+..+.+.++ +.+++.+...+.++-+|-.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG-~t-----W~~~~~~~~~~~~~~~~~~~-~~~~~~g~~G~~~~S~d~g 192 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITN-VGAIYR-TKDSG-KN-----WQALVQEAIGVMRNLNRSPS-GEYVAVSSRGSFYSTWEPG 192 (327)
T ss_dssp SCEEEEEEEETTEEEEEET-TCCEEE-ESSTT-SS-----EEEEECSCCCCEEEEEECTT-SCEEEEETTSSEEEEECTT
T ss_pred CCeEEEEEECCCCEEEEeC-CccEEE-EcCCC-CC-----CEEeecCCCcceEEEEEcCC-CcEEEEECCCcEEEEeCCC
Confidence 4577888877777666654 554321 12222 00 11112233456889999998 7788777654445555531
Q ss_pred CCcceeec-ccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 457 TQQSVMEY-EEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 457 ~~~~~~~~-~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
+..-..+ ......+..+.+.+ ++.+++.+ .+|.+
T Consensus 193 -G~tW~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~G~~ 227 (327)
T 2xbg_A 193 -QTAWEPHNRTTSRRLHNMGFTP-DGRLWMIV-NGGKI 227 (327)
T ss_dssp -CSSCEEEECCSSSCEEEEEECT-TSCEEEEE-TTTEE
T ss_pred -CCceeECCCCCCCccceeEECC-CCCEEEEe-CCceE
Confidence 2211111 12345678888888 77655443 44544
No 395
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=80.16 E-value=17 Score=38.40 Aligned_cols=108 Identities=13% Similarity=0.046 Sum_probs=65.7
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeC
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 455 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~ 455 (495)
...|.++..++++.+.+ |..++-+..||..++.-. ..... ......|.++...++ +.+++ |+. +-|.+||.
T Consensus 406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~--~~~~~---~~~~~~v~~i~~d~~-g~lwi-gt~-~Gl~~~~~ 476 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ--IIELE---KNELLDVRVFYEDKN-KKIWI-GTH-AGVFVIDL 476 (781)
T ss_dssp CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE--ECCST---TTCCCCEEEEEECTT-SEEEE-EET-TEEEEEES
T ss_pred CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE--EeccC---CCCCCeEEEEEECCC-CCEEE-EEC-CceEEEeC
Confidence 46799999988887765 555667888887664100 00000 113456889988877 55444 444 56889998
Q ss_pred CCCcceeecccc-----cCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 456 TTQQSVMEYEEH-----EKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 456 ~~~~~~~~~~~h-----~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
.++......... ...|.++...+ +|.+.+....+|..
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~~Gl~ 518 (781)
T 3v9f_A 477 ASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFGGGVG 518 (781)
T ss_dssp SSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESSSCEE
T ss_pred CCCeEEecccCcccccccceeEEEEEcC-CCCEEEEEcCCCEE
Confidence 766543222111 35788888887 77766555445543
No 396
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=79.66 E-value=4.9 Score=41.82 Aligned_cols=102 Identities=4% Similarity=-0.060 Sum_probs=56.1
Q ss_pred EEEEEcc-CCCEEEEEeCCC-----------cEEEEEccccccCCCCcCCCee--ecCCCCCeEEEEEcCCCCCEEEEec
Q 048199 380 SSIEFDR-DDQLFATAGVSR-----------RIKVFDFASVVNEPADVHCPVV--EMPTRSKLSCLSWNKFSKNRIASSD 445 (495)
Q Consensus 380 ~~l~~~p-~~~~l~s~s~d~-----------~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~sg~ 445 (495)
.++.|.. ++++++.||.+. .|.+||..+.. ...+. .+.....-.+....|+ +.+++.|+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~------W~~~~~~~mp~~R~~~~~~~l~~-g~i~v~GG 474 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP------NTVFASNGLYFARTFHTSVVLPD-GSTFITGG 474 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC------EEEECTTCCSSCCBSCEEEECTT-SCEEEECC
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC------eeEEccCCCCCCcccCCeEECCC-CCEEEECC
Confidence 3444544 677888887543 57777766540 00000 1111111234455677 78888887
Q ss_pred CC-----------CcEEEEeCCCCcc--eeecccccCcEEEEEeecCCCCeEEEeeC
Q 048199 446 YE-----------GIVTVWDVTTQQS--VMEYEEHEKRAWSVDFSRTEPSMLVSGSD 489 (495)
Q Consensus 446 ~d-----------g~v~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~g~~l~s~s~ 489 (495)
.+ ..+.+||..+.+- +..+...........+.+ +|.+++.||.
T Consensus 475 ~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 475 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred cccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCC-CcEEEecCCC
Confidence 64 4689999876532 222221122222344567 9999999985
No 397
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=79.12 E-value=15 Score=34.69 Aligned_cols=114 Identities=9% Similarity=0.098 Sum_probs=70.4
Q ss_pred CcEEEEEE--ccC-CC-EEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEE
Q 048199 377 NIVSSIEF--DRD-DQ-LFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTV 452 (495)
Q Consensus 377 ~~V~~l~~--~p~-~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~i 452 (495)
..++.+++ +|. +. +++....++.+..|++....... .....+..+...+.+-.|...+. ...|+.+-.+.-|..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lgsq~EgcvvDd~-~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMNSQTEGMAADDE-YGRLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECSSCEEEEEEETT-TTEEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCCCCcceEEEcCC-CCeEEEecccceEEE
Confidence 55777888 664 44 67778888999999995420000 01134455566678999999988 778999998877666
Q ss_pred EeCC-----CCcceeecc-cc-cCcEEEEEeecC-CCC-eEEEee-CCCc
Q 048199 453 WDVT-----TQQSVMEYE-EH-EKRAWSVDFSRT-EPS-MLVSGS-DDCK 492 (495)
Q Consensus 453 wd~~-----~~~~~~~~~-~h-~~~v~~v~~~~~-~g~-~l~s~s-~D~~ 492 (495)
+|.+ ++..+..+. +| ...+-.|++-+. ++. +|+..| .+.+
T Consensus 206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 6754 244554442 33 236778877421 444 454444 3433
No 398
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=78.36 E-value=4.1 Score=42.57 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=33.4
Q ss_pred CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 446 YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+|.|..||..+|+.+-.+..+. +++...+.. .+.+++.++.|+.|+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g~~dg~l~ 482 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMH 482 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEE
T ss_pred ccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEECCcccch
Confidence 34889999999998877665432 333334444 667888888898876
No 399
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=77.55 E-value=1.1 Score=35.29 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=39.7
Q ss_pred cccccccchhhh---ccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCC
Q 048199 53 MLCPICMQIIKE---AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQL 101 (495)
Q Consensus 53 l~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 101 (495)
+.|..|...+.+ .....=|..||..|..+.+.....|-.|++++....+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 689999999973 4566789999999999987655689999999875443
No 400
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=77.50 E-value=0.8 Score=33.10 Aligned_cols=37 Identities=27% Similarity=0.699 Sum_probs=25.5
Q ss_pred cccccc--ccchhh-----hcccc------CCCCccchhhHHhhhcCCCCCC
Q 048199 52 DMLCPI--CMQIIK-----EAFLT------ACGHSFCYMCIITHLRNKSDCP 90 (495)
Q Consensus 52 ~l~C~I--C~~~~~-----~Pv~l------~CGH~FC~~Ci~~~~~~~~~CP 90 (495)
...||- |...+. .++.. .|||.||..|.+.|-. ..|.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Cccc
Confidence 445877 776653 12444 6999999999999854 4554
No 401
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=77.36 E-value=4 Score=41.81 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=29.9
Q ss_pred CCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 447 EGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 447 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
+|.|.-||..+|+.+-.+..+. +++.-.... .+.+++.|+.|+.++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~ 510 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFK 510 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEE
Confidence 6889999999998876665322 222222222 456777788888775
No 402
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=77.03 E-value=4.1 Score=41.94 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=25.2
Q ss_pred CCEEEEecCCCcEEEEeCCCCcceeeccc
Q 048199 438 KNRIASSDYEGIVTVWDVTTQQSVMEYEE 466 (495)
Q Consensus 438 ~~~l~sg~~dg~v~iwd~~~~~~~~~~~~ 466 (495)
+.+++.|+.||.|+.||.++|+.+-.+.-
T Consensus 484 gg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 484 GDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 56778899999999999999999887753
No 403
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.42 E-value=17 Score=37.09 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=6.2
Q ss_pred ccchhhHHhhhc
Q 048199 73 SFCYMCIITHLR 84 (495)
Q Consensus 73 ~FC~~Ci~~~~~ 84 (495)
.|-..|+..|+.
T Consensus 356 ~~~~~~~~~~~~ 367 (597)
T 3oja_B 356 DWDCNSLRALFR 367 (597)
T ss_dssp CEEHHHHHHHTT
T ss_pred CCCChhHHHHHH
Confidence 343446666654
No 404
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=76.21 E-value=36 Score=29.89 Aligned_cols=105 Identities=10% Similarity=-0.064 Sum_probs=57.9
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecC--CCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCC
Q 048199 379 VSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMP--TRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVT 456 (495)
Q Consensus 379 V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~ 456 (495)
..++.|+|+|.+.++ .|+.|.-++-.+.... .....-..++ .=..+..|.|.|+ +.+.+.. |+.+.-+...
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~--~Wl~~a~~vg~~gw~~~~~lff~p~-G~Lyav~--dg~lyr~~~P 162 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTD--NWIARATEVGSGGWSGFKFLFFHPN-GYLYAVH--GQQFYKALPP 162 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTC--CHHHHSEEEECSSGGGEEEEEECTT-SCEEEEE--TTEEEEECCC
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCC--ceeccccEeccCCCCceEEEEECCC-ceEEEEe--CCcEEecCCC
Confidence 468899999998887 5688776664322000 0000011111 1135789999999 8766666 7776544433
Q ss_pred CCcce-----eecc--cccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 457 TQQSV-----MEYE--EHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 457 ~~~~~-----~~~~--~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
++... .+.. +.-..-.-+.|.+ ++.+.+.. ++.+
T Consensus 163 ~~~~~~wl~~~~~~g~~g~~~yr~l~f~~-~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 163 VSNQDNWLARATKIGQGGWDTFKFLFFSS-VGTLFGVQ--GGKF 203 (236)
T ss_dssp SSTTCCHHHHCEEEESSSGGGEEEEEECT-TSCEEEEE--TTEE
T ss_pred CCCCcccccccceeccCCcceEEEEEECC-CCcEEEEe--CCeE
Confidence 32211 1111 2222345577888 87666554 6655
No 405
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=75.04 E-value=1.6 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=19.1
Q ss_pred ccccccccchhhhccccCCCCccchhhHHhhhcC--CCCCCCCCCc
Q 048199 52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRN--KSDCPCCGHY 95 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~--~~~CP~Cr~~ 95 (495)
...|.||+-+|....--+ ..|-.. .-.||+|+..
T Consensus 4 ~y~C~vCGyvyd~~~Gd~----------t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN----------VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTT----------CCGGGSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCC----------cchhhCCCCCcCcCCCCc
Confidence 357888888775322111 122222 2379999875
No 406
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=74.52 E-value=0.84 Score=33.51 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=21.7
Q ss_pred ccccccchhhh-----ccccC-CCCccchhhHHhh
Q 048199 54 LCPICMQIIKE-----AFLTA-CGHSFCYMCIITH 82 (495)
Q Consensus 54 ~C~IC~~~~~~-----Pv~l~-CGH~FC~~Ci~~~ 82 (495)
-||=|...+.. ++..+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 49888775531 24555 9999999999887
No 407
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.17 E-value=1.1 Score=30.35 Aligned_cols=33 Identities=24% Similarity=0.706 Sum_probs=24.7
Q ss_pred cccccccchhhhc-----cccC---CCCccchhhHHhhhcC
Q 048199 53 MLCPICMQIIKEA-----FLTA---CGHSFCYMCIITHLRN 85 (495)
Q Consensus 53 l~C~IC~~~~~~P-----v~l~---CGH~FC~~Ci~~~~~~ 85 (495)
-.||-|.-.+.-. ++.. ||+.||..|...|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3588888888643 3444 9999999999888654
No 408
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=74.16 E-value=3.3 Score=29.66 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=25.0
Q ss_pred cCCCCccccccccchhhhcccc---CCCCccchhhHHhh
Q 048199 47 SELDKDMLCPICMQIIKEAFLT---ACGHSFCYMCIITH 82 (495)
Q Consensus 47 ~~~~~~l~C~IC~~~~~~Pv~l---~CGH~FC~~Ci~~~ 82 (495)
+++..+-.|+||...- .-..+ -|+-+|.-.|+.+.
T Consensus 10 e~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 4445667799987544 33344 48999999999985
No 409
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=74.09 E-value=53 Score=34.60 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=62.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeec-----CCCCCeEEEEEcCCCCCEEEEecCCCcE
Q 048199 376 ANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEM-----PTRSKLSCLSWNKFSKNRIASSDYEGIV 450 (495)
Q Consensus 376 ~~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~l~sg~~dg~v 450 (495)
...|.++..++++.+.+... +-+..||..++. ...... .....|.++...++ +.+.++ +.++-|
T Consensus 449 ~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~d~~-g~lWig-t~~~Gl 517 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKK-------VIHHYDTSNSQLLENFVRSIAQDSE-GRFWIG-TFGGGV 517 (781)
T ss_dssp CCCEEEEEECTTSEEEEEET--TEEEEEESSSSS-------CCEEECTTTSSCSCSCEEEEEECTT-CCEEEE-ESSSCE
T ss_pred CCeEEEEEECCCCCEEEEEC--CceEEEeCCCCe-------EEecccCcccccccceeEEEEEcCC-CCEEEE-EcCCCE
Confidence 46799999988887665443 458888877641 101110 11356889988887 665554 443447
Q ss_pred EEEeCCCCcceeecc-c---ccCcEEEEEeecCCCCeEEEeeCCCc
Q 048199 451 TVWDVTTQQSVMEYE-E---HEKRAWSVDFSRTEPSMLVSGSDDCK 492 (495)
Q Consensus 451 ~iwd~~~~~~~~~~~-~---h~~~v~~v~~~~~~g~~l~s~s~D~~ 492 (495)
..||..++.. ..+. . ....|.++...+ +|.+.+++. +|.
T Consensus 518 ~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~-~g~lWi~T~-~Gl 560 (781)
T 3v9f_A 518 GIYTPDMQLV-RKFNQYEGFCSNTINQIYRSS-KGQMWLATG-EGL 560 (781)
T ss_dssp EEECTTCCEE-EEECTTTTCSCSCEEEEEECT-TSCEEEEET-TEE
T ss_pred EEEeCCCCeE-EEccCCCCCCCCeeEEEEECC-CCCEEEEEC-CCc
Confidence 7788776543 2222 1 135688888877 777665543 554
No 410
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=73.53 E-value=4 Score=29.64 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=24.2
Q ss_pred Cccccccccchhhhc----cccCCCCccchhhHHhh
Q 048199 51 KDMLCPICMQIIKEA----FLTACGHSFCYMCIITH 82 (495)
Q Consensus 51 ~~l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~ 82 (495)
+...|.+|...|.-- .--.||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345799999998732 13379999999998764
No 411
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=73.23 E-value=3.8 Score=28.18 Aligned_cols=43 Identities=19% Similarity=0.536 Sum_probs=30.3
Q ss_pred ccccccccchhhhcccc--CCCCccchhhHHhhhcCCC----CCCCCCCcC
Q 048199 52 DMLCPICMQIIKEAFLT--ACGHSFCYMCIITHLRNKS----DCPCCGHYL 96 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l--~CGH~FC~~Ci~~~~~~~~----~CP~Cr~~~ 96 (495)
.-.|.||.+-= + .++ .|...|+..|+..-+...+ .||.|....
T Consensus 12 ~~~C~vC~~~~-~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDGT-D-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCCT-T-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCCC-e-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45699998642 2 222 6999999999976655432 799997654
No 412
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=73.03 E-value=20 Score=36.13 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=51.7
Q ss_pred EEEEccCCCEEEEE-eCCCcEEEEEccccccC----C-CCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEe
Q 048199 381 SIEFDRDDQLFATA-GVSRRIKVFDFASVVNE----P-ADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 454 (495)
Q Consensus 381 ~l~~~p~~~~l~s~-s~d~~i~vwd~~~~~~~----~-~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd 454 (495)
.+.++|||++++.+ -.+.++.|+|+...... + ......+....-.-...-.+|.++ |+-..|--.|..|-.|+
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~-G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGR-GNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSS-SEEEEEETTTTEEEEEE
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCC-CceEeeeeecceEEEEe
Confidence 67899999987755 46899999999863110 1 111112223333446788999998 76556666899999999
Q ss_pred CCC
Q 048199 455 VTT 457 (495)
Q Consensus 455 ~~~ 457 (495)
+..
T Consensus 406 i~~ 408 (638)
T 3sbq_A 406 MEE 408 (638)
T ss_dssp HHH
T ss_pred ccH
Confidence 864
No 413
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=72.94 E-value=0.53 Score=36.92 Aligned_cols=42 Identities=19% Similarity=0.437 Sum_probs=27.9
Q ss_pred ccccccccchhhhc----cccCCCCccchhhHHhhhcCCCCCCCCC
Q 048199 52 DMLCPICMQIIKEA----FLTACGHSFCYMCIITHLRNKSDCPCCG 93 (495)
Q Consensus 52 ~l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr 93 (495)
...|..|...|+-- ..-.||.+||..|..........|-.|-
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 35799999988743 2447999999999887655444566663
No 414
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=72.78 E-value=63 Score=30.28 Aligned_cols=102 Identities=9% Similarity=0.101 Sum_probs=57.7
Q ss_pred cCCCcEEEEEEccC---CCEEEEEeC---CCcEEEEEcccc---ccCCCCcCCCeeecC---CCCCeEEEEEcCCCCCEE
Q 048199 374 HSANIVSSIEFDRD---DQLFATAGV---SRRIKVFDFASV---VNEPADVHCPVVEMP---TRSKLSCLSWNKFSKNRI 441 (495)
Q Consensus 374 ~h~~~V~~l~~~p~---~~~l~s~s~---d~~i~vwd~~~~---~~~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~~l 441 (495)
||.+....+.+.-+ ..+|+.+.. .++++|-++... ...+. .+.....+. ..+-.-++..++. ..++
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~-kk~vdi~fppea~~DFPVamqvs~k-ygvi 274 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEK-HDVV 274 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-CEEEEECCCTTCTTCCEEEEEEETT-TTEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-cccceeeCCccccCCceEEEEeccc-CCEE
Confidence 56655544444321 124443333 258899998553 11110 001111121 2344668888877 6678
Q ss_pred EEecCCCcEEEEeCCCCcceeecccccCcEEEEEee
Q 048199 442 ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFS 477 (495)
Q Consensus 442 ~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~ 477 (495)
+--+.-|.|++||+.+|.++..-+=-.+.|..-+..
T Consensus 275 yviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~ 310 (365)
T 2xzh_A 275 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 310 (365)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred EEEeCCcEEEEEEcccCcEEEEeccCCCceEEeccc
Confidence 888888999999999999876655444555544443
No 415
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=72.24 E-value=32 Score=28.66 Aligned_cols=37 Identities=5% Similarity=0.007 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 175 HCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYR 211 (495)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~ 211 (495)
...+..+......++.....|+.+...|+..+..+..
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445555555555555555544
No 416
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=71.77 E-value=2.2 Score=30.07 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=22.8
Q ss_pred cccccccchhhhc----cccCCCCccchhhHHhh
Q 048199 53 MLCPICMQIIKEA----FLTACGHSFCYMCIITH 82 (495)
Q Consensus 53 l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~ 82 (495)
-.|.+|...|.-- .--.||++||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 4799999988732 13379999999998654
No 417
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.70 E-value=45 Score=28.15 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 048199 168 QILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRM 222 (495)
Q Consensus 168 ~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~ 222 (495)
+.++.-+.....+....+..++.++..+......+..++.+|...-+......|.
T Consensus 73 e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 73 EALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333333344444455555666666666666666666666665544444443
No 418
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=71.46 E-value=24 Score=24.93 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 169 ILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYR 211 (495)
Q Consensus 169 ~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~ 211 (495)
...+.|..-...+...+.+++++-..+...+..++.+..+|.+
T Consensus 32 rT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 32 RTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666777777777777777777776666654
No 419
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.09 E-value=42 Score=33.02 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048199 191 DLHYIKEDINAVERHRIDLYRAR 213 (495)
Q Consensus 191 ~~~~l~~~i~~l~~~~~~l~~~~ 213 (495)
++++++.++.+++.++++++..+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555554443
No 420
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=70.28 E-value=48 Score=31.12 Aligned_cols=18 Identities=6% Similarity=0.063 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048199 193 HYIKEDINAVERHRIDLY 210 (495)
Q Consensus 193 ~~l~~~i~~l~~~~~~l~ 210 (495)
..|+..|+.+..+++.|+
T Consensus 137 r~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 421
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=69.63 E-value=48 Score=32.58 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 170 LLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLY 210 (495)
Q Consensus 170 l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~ 210 (495)
|.+-|+....+.+..+++++.++..++.+++.++.++++++
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 430 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444445566666666666666666666665553
No 422
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=69.34 E-value=2.1 Score=30.96 Aligned_cols=32 Identities=28% Similarity=0.659 Sum_probs=24.2
Q ss_pred ccccccccchhhhc----cccCCCCccchhhHHhhh
Q 048199 52 DMLCPICMQIIKEA----FLTACGHSFCYMCIITHL 83 (495)
Q Consensus 52 ~l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~~ 83 (495)
...|.+|...|.-- .--.||++||..|....+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 45799999998732 133799999999987643
No 423
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=68.98 E-value=67 Score=29.01 Aligned_cols=16 Identities=6% Similarity=0.165 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 048199 176 CLRKQKVDELKEIQTD 191 (495)
Q Consensus 176 ~~~~~~~~~l~~~~~~ 191 (495)
+++..+...+++++..
T Consensus 81 el~~~l~~~~eeLr~~ 96 (273)
T 3s84_A 81 RMERVLRENADSLQAS 96 (273)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3334444444444433
No 424
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.63 E-value=13 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048199 184 ELKEIQTDLHYIKEDINAVERHRIDLYRARD 214 (495)
Q Consensus 184 ~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~~ 214 (495)
..+.++.+...|+.++..|..++.+|+..+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556666666666666666665543
No 425
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=67.88 E-value=1.6 Score=37.33 Aligned_cols=47 Identities=21% Similarity=0.492 Sum_probs=38.0
Q ss_pred ccccccccchhhh---ccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 52 DMLCPICMQIIKE---AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
=+.|..|...+.+ +....=|..||..|..+.+.....|+.|++++..
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 4789999999986 5667789999999998876533379999998864
No 426
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.54 E-value=24 Score=24.45 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 180 QKVDELKEIQTDLHYIKEDINAVERHRIDLY 210 (495)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~ 210 (495)
+..+.+++++.++...+..|.+|+.++..++
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455556666666666666666665543
No 427
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.55 E-value=4.1 Score=26.22 Aligned_cols=42 Identities=24% Similarity=0.620 Sum_probs=26.9
Q ss_pred ccccccchhhhcccc---CCCCccchhhHHhhhcCC----CCCCCCCCc
Q 048199 54 LCPICMQIIKEAFLT---ACGHSFCYMCIITHLRNK----SDCPCCGHY 95 (495)
Q Consensus 54 ~C~IC~~~~~~Pv~l---~CGH~FC~~Ci~~~~~~~----~~CP~Cr~~ 95 (495)
.|.||...-..-.++ .|...|...|+..-+... -.||.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 478887654322222 688899999996544332 269999753
No 428
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.95 E-value=3 Score=28.61 Aligned_cols=26 Identities=23% Similarity=0.499 Sum_probs=21.5
Q ss_pred ccccccccchhhhc----cccCCCCccchh
Q 048199 52 DMLCPICMQIIKEA----FLTACGHSFCYM 77 (495)
Q Consensus 52 ~l~C~IC~~~~~~P----v~l~CGH~FC~~ 77 (495)
...|..|.....-+ ....||.+||..
T Consensus 15 ~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred CCcchhhCCeecccccCceEecCCCEehhc
Confidence 45799999988876 566999999975
No 429
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.84 E-value=2.2 Score=33.75 Aligned_cols=25 Identities=28% Similarity=0.685 Sum_probs=0.0
Q ss_pred ccccccchhhhc----cccCCCCccchhh
Q 048199 54 LCPICMQIIKEA----FLTACGHSFCYMC 78 (495)
Q Consensus 54 ~C~IC~~~~~~P----v~l~CGH~FC~~C 78 (495)
.|.+|...|.-- ..-.||++||..|
T Consensus 71 ~C~~C~~~Fs~~~RrHHCR~CG~vfC~~C 99 (125)
T 1joc_A 71 NCMACGKGFSVTVRRHHCRQCGNIFCAEC 99 (125)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred CCcCcCCccccccccccCCCCCeEEChHH
No 430
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=64.92 E-value=24 Score=26.54 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 048199 187 EIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLR 221 (495)
Q Consensus 187 ~~~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~~ 221 (495)
+.+.++..|..++..|+..+..|.+.++-+-.++|
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555554444443
No 431
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=64.65 E-value=66 Score=35.48 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048199 192 LHYIKEDINAVERHRIDLY 210 (495)
Q Consensus 192 ~~~l~~~i~~l~~~~~~l~ 210 (495)
+..|+++...|++++.+|.
T Consensus 1025 v~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1025 VSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 432
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=63.13 E-value=2.1 Score=31.57 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=11.2
Q ss_pred ccchhhHHhhhcC
Q 048199 73 SFCYMCIITHLRN 85 (495)
Q Consensus 73 ~FC~~Ci~~~~~~ 85 (495)
-||+.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999864
No 433
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=62.99 E-value=2.1 Score=31.49 Aligned_cols=13 Identities=31% Similarity=0.795 Sum_probs=11.1
Q ss_pred ccchhhHHhhhcC
Q 048199 73 SFCYMCIITHLRN 85 (495)
Q Consensus 73 ~FC~~Ci~~~~~~ 85 (495)
-||+.|+.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 434
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=62.98 E-value=62 Score=30.52 Aligned_cols=106 Identities=8% Similarity=0.039 Sum_probs=60.9
Q ss_pred cEEEEEEccCCCEEEEEe------------CCCcEEEEEccccccCCCCcCCCeeecC-----CCCCeEEEEEcCC-CCC
Q 048199 378 IVSSIEFDRDDQLFATAG------------VSRRIKVFDFASVVNEPADVHCPVVEMP-----TRSKLSCLSWNKF-SKN 439 (495)
Q Consensus 378 ~V~~l~~~p~~~~l~s~s------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~p~-~~~ 439 (495)
..-+|.+.|+|..+++++ .+|.|.++|........ ..+...+ .......+.+.++ ++.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~----~~l~~~g~~~~~~~f~PhGi~~~~d~dg~ 126 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV----SELEIIGNTLDISSFNPHGISTFIDDDNT 126 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE----EECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce----EEEEccCCCCCcCceeeeeeEEEECCCCc
Confidence 345777788776666652 68999999987431110 0111111 1235778887663 132
Q ss_pred --EEEEecC--CCcEEEEeCCCCc----ceeecccc-cCcEEEEEeecCCCCeEEEee
Q 048199 440 --RIASSDY--EGIVTVWDVTTQQ----SVMEYEEH-EKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 440 --~l~sg~~--dg~v~iwd~~~~~----~~~~~~~h-~~~v~~v~~~~~~g~~l~s~s 488 (495)
+++.-.. +.+|.+|++.... .+.++.+. -...+.+.+.+ +|.+.++..
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~ 183 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATND 183 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEES
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCC
Confidence 4444333 5678888876532 23344432 24678999999 888777654
No 435
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=62.76 E-value=1e+02 Score=28.82 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=47.8
Q ss_pred CeeecCCCCCeEEEEEcCC------CCCEEEEecCCCcEEEEeCCCCcceee---cccccCcEEEEEeecCCCCeEEEee
Q 048199 418 PVVEMPTRSKLSCLSWNKF------SKNRIASSDYEGIVTVWDVTTQQSVME---YEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 418 ~~~~~~~~~~i~~~~~~p~------~~~~l~sg~~dg~v~iwd~~~~~~~~~---~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
++..+.+...+..+.|... .+.+|++.-..+.|...++..+..+.. +.+...++..+++.| +|.++++..
T Consensus 263 P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~td 341 (353)
T 2g8s_A 263 PVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DGYLYVLTD 341 (353)
T ss_dssp CSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TSCEEEEEC
T ss_pred CeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CCcEEEEEe
Confidence 4444455556788888642 266777777777888888775543222 222335789999999 998776533
Q ss_pred -CCCcE
Q 048199 489 -DDCKV 493 (495)
Q Consensus 489 -~D~~v 493 (495)
.+|.|
T Consensus 342 ~~~g~I 347 (353)
T 2g8s_A 342 ESSGEL 347 (353)
T ss_dssp STTEEE
T ss_pred CCCCEE
Confidence 45655
No 436
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=62.69 E-value=5.3 Score=26.93 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=29.5
Q ss_pred CCccccccccchhhhcccc--CCCCccchhhHHhhhcCC----CCCCCCCCc
Q 048199 50 DKDMLCPICMQIIKEAFLT--ACGHSFCYMCIITHLRNK----SDCPCCGHY 95 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l--~CGH~FC~~Ci~~~~~~~----~~CP~Cr~~ 95 (495)
..+..|.||.+. .-.++ .|...|+..|+..-+... -.||.|...
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345679999863 12222 688889999998544432 279999764
No 437
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=62.44 E-value=5.4 Score=26.88 Aligned_cols=43 Identities=21% Similarity=0.667 Sum_probs=29.9
Q ss_pred CCccccccccchhhhcccc--CCCCccchhhHHhhhcCC----CCCCCCCC
Q 048199 50 DKDMLCPICMQIIKEAFLT--ACGHSFCYMCIITHLRNK----SDCPCCGH 94 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l--~CGH~FC~~Ci~~~~~~~----~~CP~Cr~ 94 (495)
..+..|.||.+. .-.++ .|-..|+..|+..-+... -.||.|..
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999973 22222 688899999998754432 37999965
No 438
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=62.44 E-value=18 Score=37.07 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcEe
Q 048199 446 YEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVL 494 (495)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v~ 494 (495)
.+|.|.-||..+|+.+-.... ..++++-.+.. .+.+++.++.|+.|+
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~t-agg~vf~gt~dg~l~ 497 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMAT-AGDLVFYGTLDGYLK 497 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEE-TTTEEEEECTTSEEE
T ss_pred CcCeEEEEECCCCCEEeEecC-CCCccCcceEe-cCCEEEEECCCCeEE
Confidence 357899999999987766542 22222111222 456777788888775
No 439
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=62.30 E-value=6 Score=26.45 Aligned_cols=40 Identities=25% Similarity=0.632 Sum_probs=28.2
Q ss_pred cccccccchhhhcc---ccCCCCccchhhHHhhhcCCCCCCCC
Q 048199 53 MLCPICMQIIKEAF---LTACGHSFCYMCIITHLRNKSDCPCC 92 (495)
Q Consensus 53 l~C~IC~~~~~~Pv---~l~CGH~FC~~Ci~~~~~~~~~CP~C 92 (495)
..|--|+..|.+.. --.|++.||..|=.=.-+.=..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35999999997653 34799999999943222222579988
No 440
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.21 E-value=5.8 Score=28.75 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=23.4
Q ss_pred ccccccccchhhhc----cccCCCCccchhhHHhh
Q 048199 52 DMLCPICMQIIKEA----FLTACGHSFCYMCIITH 82 (495)
Q Consensus 52 ~l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~ 82 (495)
-..|.+|...|.-- .--.||++||..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 35799999998632 13379999999997654
No 441
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=61.49 E-value=77 Score=34.91 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 048199 193 HYIKEDINAVERHRIDLYRARDRYS 217 (495)
Q Consensus 193 ~~l~~~i~~l~~~~~~l~~~~~~~~ 217 (495)
+.|++++..|+.++..|+++++...
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666665555433
No 442
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=60.80 E-value=2.5 Score=33.63 Aligned_cols=48 Identities=15% Similarity=0.383 Sum_probs=37.9
Q ss_pred Cccccccccchhhh---ccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 51 KDMLCPICMQIIKE---AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 51 ~~l~C~IC~~~~~~---Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
+=+.|..|...+.+ +....=|..||..|..+.......|..|++++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 34789999999853 4566789999999999876544489999998864
No 443
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=60.18 E-value=4 Score=32.14 Aligned_cols=45 Identities=16% Similarity=0.445 Sum_probs=36.7
Q ss_pred ccccccccchhhh-ccccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 52 DMLCPICMQIIKE-AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~~~~~~-Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
-+.|..|...+.. +....=|..||..|..+.. .++|+.|++++..
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCCc
Confidence 4789999998875 4566789999999998753 4689999999875
No 444
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.83 E-value=26 Score=21.20 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 184 ELKEIQTDLHYIKEDINAVERHRIDLYRAR 213 (495)
Q Consensus 184 ~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~ 213 (495)
..++++.....|++.+..|+.+..-|++.+
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 333444445555555555555555555443
No 445
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=59.55 E-value=2.7 Score=29.75 Aligned_cols=48 Identities=17% Similarity=0.440 Sum_probs=32.5
Q ss_pred CCccccccccchhhhcccc---CCCCccchhhHHhhhcC----CCCCCCCCCcCc
Q 048199 50 DKDMLCPICMQIIKEAFLT---ACGHSFCYMCIITHLRN----KSDCPCCGHYLT 97 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l---~CGH~FC~~Ci~~~~~~----~~~CP~Cr~~~~ 97 (495)
.+...|+||......-.++ .|.--|...|+.--... ...||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4556799999876432233 68888889998754332 247999976543
No 446
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=59.35 E-value=70 Score=29.88 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=59.5
Q ss_pred EEEEEEcc-CCCEEEEEeCCCcE------EEEEcccccc----------CCCCcCCCeeecCCCCCeEEEEEcCCCCCEE
Q 048199 379 VSSIEFDR-DDQLFATAGVSRRI------KVFDFASVVN----------EPADVHCPVVEMPTRSKLSCLSWNKFSKNRI 441 (495)
Q Consensus 379 V~~l~~~p-~~~~l~s~s~d~~i------~vwd~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 441 (495)
...++|+| ++.++++-.....+ .|.-+..+.+ .......++..+.+......++|. + +.++
T Consensus 204 p~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~-~-G~l~ 281 (352)
T 2ism_A 204 PQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF-R-GDLY 281 (352)
T ss_dssp ECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE-T-TEEE
T ss_pred cccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE-C-CEEE
Confidence 56789999 67776654433331 2333332210 000112344444444567788883 3 6666
Q ss_pred EEecCCCcEEEEeCCCCcc------eeecccccCcEEEEEeecCCCCeEEEee
Q 048199 442 ASSDYEGIVTVWDVTTQQS------VMEYEEHEKRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 442 ~sg~~dg~v~iwd~~~~~~------~~~~~~h~~~v~~v~~~~~~g~~l~s~s 488 (495)
++....+.|...++..... ...+..-..++..+++.| ||.++++..
T Consensus 282 v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 282 VAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp EEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT-TSCEEEEEC
T ss_pred EEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC-CCcEEEEEe
Confidence 6666667788777754321 122222235789999999 998777664
No 447
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.20 E-value=55 Score=35.60 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=27.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEcccc
Q 048199 377 NIVSSIEFDRDDQLFATAGVSRRIKVFDFASV 408 (495)
Q Consensus 377 ~~V~~l~~~p~~~~l~s~s~d~~i~vwd~~~~ 408 (495)
..|.++...++..++++-+.|+++|+|++.++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTT
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCC
Confidence 35677777888889999999999999999886
No 448
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=58.95 E-value=1.2e+02 Score=28.44 Aligned_cols=94 Identities=12% Similarity=0.262 Sum_probs=62.5
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEccccccCCCCcCCCeeecCCCCCeEEEEEcCCCCCEEEEecCCCcEEEEeCCC-Ccc
Q 048199 382 IEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVTT-QQS 460 (495)
Q Consensus 382 l~~~p~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~-~~~ 460 (495)
.-.||..+.+|.-. ..++.|||+++. ..+........|..-.|-.+ ..|+--+ +..|.-|++.. ..+
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK--------~klks~~~~e~VvfWkWis~--~~L~lVT-~taVyHWs~~~~s~P 139 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMK--------SKMKAHTMTDDVTFWKWISL--NTVALVT-DNAVYHWSMEGESQP 139 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTT--------EEEEEEECSSCEEEEEECSS--SEEEEEE-SSEEEEEESSTTCCC
T ss_pred eeeCCCccEEEEec-CCeEEEechHHh--------hhhcceecCCccEEEEecCC--CeEEEEc-CCcEEEEcccCCCCC
Confidence 34588888887665 789999999986 44444445567888889654 2343333 35899999974 467
Q ss_pred eeeccccc----CcEEEEEeecCCCCeEEEee
Q 048199 461 VMEYEEHE----KRAWSVDFSRTEPSMLVSGS 488 (495)
Q Consensus 461 ~~~~~~h~----~~v~~v~~~~~~g~~l~s~s 488 (495)
++.|..|. ..|-.-..++ +.++++-.+
T Consensus 140 ~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~G 170 (365)
T 2xzh_A 140 VKMFDRHSSLAGCQIINYRTDA-KQKWLLLTG 170 (365)
T ss_dssp EEEEECCGGGTTCEEEEEEECT-TSCEEEEEE
T ss_pred ceeeecchhcccceEEEEEECC-CCCEEEEEe
Confidence 77776663 3455555666 777765443
No 449
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=58.22 E-value=1.4e+02 Score=29.15 Aligned_cols=117 Identities=9% Similarity=0.102 Sum_probs=66.2
Q ss_pred cCCCcEEEEEEccC---CCEEEEEeCC---CcEEEEEcccc---ccCCCCcCCCeeecC---CCCCeEEEEEcCCCCCEE
Q 048199 374 HSANIVSSIEFDRD---DQLFATAGVS---RRIKVFDFASV---VNEPADVHCPVVEMP---TRSKLSCLSWNKFSKNRI 441 (495)
Q Consensus 374 ~h~~~V~~l~~~p~---~~~l~s~s~d---~~i~vwd~~~~---~~~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~~l 441 (495)
||.+....+.+.-+ ..+|+.+... ++++|.++... ...+. .+.....+. ..+-..++..++. ..++
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~-kk~vdv~fppe~~~DFPvamqvs~k-ygvi 273 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEK-HDVV 273 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-CEEEECCCCTTSTTCCEEEEEEETT-TTEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-ceeeeeeCCcccccCceeEEEeccc-CCEE
Confidence 66666655555321 1244444433 78999998653 11110 000111111 2344678888888 6678
Q ss_pred EEecCCCcEEEEeCCCCcceeecccccCcEEEEEeecCCCCeEEEeeCCCcE
Q 048199 442 ASSDYEGIVTVWDVTTQQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV 493 (495)
Q Consensus 442 ~sg~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~g~~l~s~s~D~~v 493 (495)
+.-+.-|.|++||+.+|.++..-.--...|..-+... ...-++.....|.|
T Consensus 274 yviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 274 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQV 324 (494)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TTTEEEEEETTCEE
T ss_pred EEEecCceEEEEecccceeeeeecccCCceEEecccC-CCCcEEEEccCceE
Confidence 8888889999999999998766554455555554444 32233333345443
No 450
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=57.64 E-value=3.9 Score=30.02 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=23.7
Q ss_pred ccccccccchhhhc----cccCCCCccchhhHHhh
Q 048199 52 DMLCPICMQIIKEA----FLTACGHSFCYMCIITH 82 (495)
Q Consensus 52 ~l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~ 82 (495)
.-.|.+|...|.-- ..-.||++||..|....
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 34699999988732 23479999999998764
No 451
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=57.58 E-value=3.5 Score=34.59 Aligned_cols=10 Identities=40% Similarity=0.952 Sum_probs=7.6
Q ss_pred CCCCCCCCcC
Q 048199 87 SDCPCCGHYL 96 (495)
Q Consensus 87 ~~CP~Cr~~~ 96 (495)
..||+|+.+-
T Consensus 154 ~~CP~Cg~~~ 163 (170)
T 3pwf_A 154 EYCPVCGAPK 163 (170)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCH
Confidence 3899998753
No 452
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=57.53 E-value=77 Score=30.97 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=14.1
Q ss_pred cccCcEEEEEeecCCCCeEEEe
Q 048199 466 EHEKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 466 ~h~~~v~~v~~~~~~g~~l~s~ 487 (495)
+|. ....++|.+ +|.++++-
T Consensus 226 G~R-Np~gla~dp-~G~L~~~d 245 (454)
T 1cru_A 226 GHR-NPQGLAFTP-NGKLLQSE 245 (454)
T ss_dssp CCS-EEEEEEECT-TSCEEEEE
T ss_pred CCC-CcceEEECC-CCCEEEEe
Confidence 444 467899999 88766654
No 453
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=57.15 E-value=4.1 Score=30.06 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=24.1
Q ss_pred ccccccccchhhhc----cccCCCCccchhhHHhhh
Q 048199 52 DMLCPICMQIIKEA----FLTACGHSFCYMCIITHL 83 (495)
Q Consensus 52 ~l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~~ 83 (495)
.-.|.+|...|.-- ..-.||++||..|.....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 34699999988621 234799999999988654
No 454
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=56.85 E-value=88 Score=29.42 Aligned_cols=90 Identities=10% Similarity=0.168 Sum_probs=51.9
Q ss_pred CCcEEEEEccccccCCCCcCC---CeeecCCC-CCeEEEEE--cCCCCC-EEEEecCCCcEEEEeCC-------CCccee
Q 048199 397 SRRIKVFDFASVVNEPADVHC---PVVEMPTR-SKLSCLSW--NKFSKN-RIASSDYEGIVTVWDVT-------TQQSVM 462 (495)
Q Consensus 397 d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~-~~i~~~~~--~p~~~~-~l~sg~~dg~v~iwd~~-------~~~~~~ 462 (495)
+.+|.+|+++.....+..... ++ ... ..+..+++ +|..+. +++....+|.+..|++. +++.+.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR 174 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR 174 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE
Confidence 578999988533111111101 11 111 45667777 775343 67777888999999883 234566
Q ss_pred ecccccCcEEEEEeecCCCCeEEEeeCCC
Q 048199 463 EYEEHEKRAWSVDFSRTEPSMLVSGSDDC 491 (495)
Q Consensus 463 ~~~~h~~~v~~v~~~~~~g~~l~s~s~D~ 491 (495)
+|.- ...+-.+...+ ...+|+.+-.|.
T Consensus 175 ~f~l-gsq~EgcvvDd-~~g~Lyv~eEd~ 201 (355)
T 3amr_A 175 AFKM-NSQTEGMAADD-EYGRLYIAEEDE 201 (355)
T ss_dssp EEEC-SSCEEEEEEET-TTTEEEEEETTT
T ss_pred EecC-CCCcceEEEcC-CCCeEEEecccc
Confidence 6653 33566666666 555666665553
No 455
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=56.57 E-value=4.3 Score=25.40 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=18.7
Q ss_pred ccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 67 LTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 67 ~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
.+.||++|=..=++.. ..-+||.|+-.+-
T Consensus 6 C~rCg~~fs~~el~~l--P~IrCpyCGyrii 34 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVL--PGVRCPYCGYKII 34 (48)
T ss_dssp CCCTTTTCCCCCSCCC--SSSCCTTTCCSCE
T ss_pred eeccCCCccHHHHhhC--CCcccCccCcEEE
Confidence 4678888865433332 2348999997763
No 456
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=56.03 E-value=6 Score=29.68 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=28.6
Q ss_pred Cccccccccchhhhcccc---CCCCccchhhHHhhhcC---CCCCCCCCC
Q 048199 51 KDMLCPICMQIIKEAFLT---ACGHSFCYMCIITHLRN---KSDCPCCGH 94 (495)
Q Consensus 51 ~~l~C~IC~~~~~~Pv~l---~CGH~FC~~Ci~~~~~~---~~~CP~Cr~ 94 (495)
+...| ||.....+-.++ .|.--|...|+.--... ...||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34568 898876554444 68888888888643222 248999974
No 457
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.94 E-value=2.5 Score=28.00 Aligned_cols=43 Identities=21% Similarity=0.617 Sum_probs=28.7
Q ss_pred CCccccccccchhhhcccc--CCCCccchhhHHhhhcCC----CCCCCCCC
Q 048199 50 DKDMLCPICMQIIKEAFLT--ACGHSFCYMCIITHLRNK----SDCPCCGH 94 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~Pv~l--~CGH~FC~~Ci~~~~~~~----~~CP~Cr~ 94 (495)
..+..|.||.+. ...++ .|...|+..|+..-+... -.||.|..
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345679999974 22222 688899999988544432 26888854
No 458
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=55.93 E-value=6.4 Score=27.51 Aligned_cols=26 Identities=27% Similarity=0.696 Sum_probs=20.0
Q ss_pred ccccccccchhh-hccccCCCCccchh
Q 048199 52 DMLCPICMQIIK-EAFLTACGHSFCYM 77 (495)
Q Consensus 52 ~l~C~IC~~~~~-~Pv~l~CGH~FC~~ 77 (495)
...|..|...+. -+....||.+||-.
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred CCcChhhCCcccccCeecCCCCEechh
Confidence 457999988643 36777899999975
No 459
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=55.55 E-value=37 Score=25.08 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048199 168 QILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYS 217 (495)
Q Consensus 168 ~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 217 (495)
+.|......+..+......+++.++..|+.+|..|+......+..+.+..
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~ 81 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAV 81 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 460
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.35 E-value=43 Score=22.29 Aligned_cols=23 Identities=4% Similarity=0.102 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048199 188 IQTDLHYIKEDINAVERHRIDLY 210 (495)
Q Consensus 188 ~~~~~~~l~~~i~~l~~~~~~l~ 210 (495)
++.+...|..++..|+.++..|+
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 461
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=55.12 E-value=29 Score=20.16 Aligned_cols=27 Identities=7% Similarity=0.212 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 187 EIQTDLHYIKEDINAVERHRIDLYRAR 213 (495)
Q Consensus 187 ~~~~~~~~l~~~i~~l~~~~~~l~~~~ 213 (495)
+++.+++.|......|+.+...|++.+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 334444445555555555555555443
No 462
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=54.67 E-value=46 Score=22.42 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 178 RKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRA 212 (495)
Q Consensus 178 ~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~ 212 (495)
+....+.+.+++.++..|..+...|..++..|++.
T Consensus 25 R~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777777777777777776654
No 463
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=54.42 E-value=5 Score=35.25 Aligned_cols=32 Identities=22% Similarity=0.555 Sum_probs=24.2
Q ss_pred Cccccccccchhhhc----cccCCCCccchhhHHhh
Q 048199 51 KDMLCPICMQIIKEA----FLTACGHSFCYMCIITH 82 (495)
Q Consensus 51 ~~l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~ 82 (495)
+.-.|++|...|.-- ..-.||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 346899999988622 13379999999998764
No 464
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=53.94 E-value=55 Score=25.71 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 168 QILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLY 210 (495)
Q Consensus 168 ~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~ 210 (495)
+...+++++..+.+...++.++..+..+++++..+...++++.
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555556666666666666666666666665554
No 465
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=53.48 E-value=81 Score=26.45 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 048199 176 CLRKQKVDELKEIQTDL-HYIKEDINAVERHRIDLYRARDRY 216 (495)
Q Consensus 176 ~~~~~~~~~l~~~~~~~-~~l~~~i~~l~~~~~~l~~~~~~~ 216 (495)
+++.+....+++++..+ ...++....+..++.+|+..+..+
T Consensus 126 el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py 167 (185)
T 3r2p_A 126 ELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPY 167 (185)
T ss_dssp HHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444333 222333334445555555554433
No 466
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.27 E-value=1.7e+02 Score=28.62 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048199 192 LHYIKEDINAVERHRIDLYRAR 213 (495)
Q Consensus 192 ~~~l~~~i~~l~~~~~~l~~~~ 213 (495)
++.++++.+.++..+.++..++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhh
Confidence 3444444444444444443333
No 467
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.43 E-value=4.4 Score=30.03 Aligned_cols=46 Identities=20% Similarity=0.554 Sum_probs=30.7
Q ss_pred CCCccccccccchhhhcccc---CCCCccchhhHHhhhcCC----CCCCCCCC
Q 048199 49 LDKDMLCPICMQIIKEAFLT---ACGHSFCYMCIITHLRNK----SDCPCCGH 94 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~Pv~l---~CGH~FC~~Ci~~~~~~~----~~CP~Cr~ 94 (495)
..+...|.||...-.+-.++ .|...|+..|+..-+... -.||.|..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34566799999876433333 688888888987444332 26999964
No 468
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=52.29 E-value=73 Score=26.46 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 171 LDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDL 209 (495)
Q Consensus 171 ~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l 209 (495)
.+.|......+....+.++++...++..+..++.+...+
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555544443
No 469
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=51.98 E-value=1.3e+02 Score=26.97 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 048199 176 CLRKQKVDELKEIQTD 191 (495)
Q Consensus 176 ~~~~~~~~~l~~~~~~ 191 (495)
+++..+...+++++..
T Consensus 103 elr~kl~~~veelk~~ 118 (273)
T 3s84_A 103 ELKAKIDQNVEELKGR 118 (273)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3344444444444433
No 470
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=51.26 E-value=10 Score=30.52 Aligned_cols=43 Identities=26% Similarity=0.530 Sum_probs=27.5
Q ss_pred ccccccccchhhhccccCCCCccchhhHHhhhc---------C--CCCCCCCCC
Q 048199 52 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLR---------N--KSDCPCCGH 94 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~---------~--~~~CP~Cr~ 94 (495)
+..|.||.+-=.=-..-.|-.+||..||..-+. . .-.||.|+.
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345777765332111227999999999996553 1 238999974
No 471
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=51.08 E-value=6.7 Score=29.33 Aligned_cols=45 Identities=16% Similarity=0.456 Sum_probs=35.4
Q ss_pred ccccccccchhhhc-cccCCCCccchhhHHhhhcCCCCCCCCCCcCcc
Q 048199 52 DMLCPICMQIIKEA-FLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN 98 (495)
Q Consensus 52 ~l~C~IC~~~~~~P-v~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~ 98 (495)
=+.|..|...+... ....=|..||..|..+.+ .++|..|++++..
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTRED--SPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC--CCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhhc--CCccccCCCcccc
Confidence 47899999998654 355679999999987643 4689999998864
No 472
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.97 E-value=9.2 Score=33.69 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=23.8
Q ss_pred ccccccccchhhhc----cccCCCCccchhhHHhh
Q 048199 52 DMLCPICMQIIKEA----FLTACGHSFCYMCIITH 82 (495)
Q Consensus 52 ~l~C~IC~~~~~~P----v~l~CGH~FC~~Ci~~~ 82 (495)
.-.|.+|...|.-- ..-.||++||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45799999988722 23479999999998764
No 473
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.75 E-value=3.5 Score=28.08 Aligned_cols=46 Identities=20% Similarity=0.452 Sum_probs=30.3
Q ss_pred CCccccccccchhhh-cccc---CCCCccchhhHHhhhc-----CCCCCCCCCCc
Q 048199 50 DKDMLCPICMQIIKE-AFLT---ACGHSFCYMCIITHLR-----NKSDCPCCGHY 95 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~-Pv~l---~CGH~FC~~Ci~~~~~-----~~~~CP~Cr~~ 95 (495)
++...|+||...+.+ -.++ .|..=|+..|+.-... ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 466789999998853 2233 5777777788753222 23589999754
No 474
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=49.70 E-value=35 Score=19.51 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 189 QTDLHYIKEDINAVERHRIDLYRA 212 (495)
Q Consensus 189 ~~~~~~l~~~i~~l~~~~~~l~~~ 212 (495)
+.+++.|-.....|+.+...|+..
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333444444444444444444433
No 475
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.67 E-value=97 Score=24.64 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 184 ELKEIQTDLHYIKEDINAVERHRIDLYR 211 (495)
Q Consensus 184 ~l~~~~~~~~~l~~~i~~l~~~~~~l~~ 211 (495)
+++.+.+++..+.+++..|+.++..|+.
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555544443
No 476
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=48.78 E-value=72 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048199 180 QKVDELKEIQTDLHYIKEDINAVERHRIDLYRARD 214 (495)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~~ 214 (495)
++...++.++.++..|+..++++...+.++.+..+
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666655555555443
No 477
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=48.71 E-value=8.1 Score=33.51 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=29.3
Q ss_pred ccccccccchhhhcc-ccCCCCccchhhHHhhhcCC----CCCCCCCCcC
Q 048199 52 DMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNK----SDCPCCGHYL 96 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~~----~~CP~Cr~~~ 96 (495)
+-.|.+|.+.= +-+ .-.|...|+..|+..-+... -.||.|+..-
T Consensus 7 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGG-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCE-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45699998542 211 12699999999987554433 2799998654
No 478
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.54 E-value=89 Score=26.13 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 178 RKQKVDELKEIQTDLHYIKEDINAVERHR 206 (495)
Q Consensus 178 ~~~~~~~l~~~~~~~~~l~~~i~~l~~~~ 206 (495)
...+.++++....+++.|.+++..++...
T Consensus 29 n~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 29 NFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444444444444444444443
No 479
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.06 E-value=2e+02 Score=27.76 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=13.8
Q ss_pred CCCCC-CCCcCccCCCcchHHHHHHHHHHhH
Q 048199 87 SDCPC-CGHYLTNNQLYPNFLLDKLLKKTSA 116 (495)
Q Consensus 87 ~~CP~-Cr~~~~~~~l~~n~~l~~~v~~~~~ 116 (495)
..||. ||-.-.+ +..+..+.+-|++++.
T Consensus 44 vkCPSGCrLqglL--~kqerdv~~rI~kLkn 72 (491)
T 1m1j_A 44 TKCPSGCRMQGII--DDTDQNYSQRIDNIRQ 72 (491)
T ss_dssp TEECCSTTHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCccchhhHH--HHhhhhHHHHHHHHHH
Confidence 57885 6543222 2234555555555543
No 480
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=48.04 E-value=11 Score=39.71 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=36.9
Q ss_pred CCccccccccchhhhc----------cccCCCCcc--------------------chhhHHhhhcCC--------CCCCC
Q 048199 50 DKDMLCPICMQIIKEA----------FLTACGHSF--------------------CYMCIITHLRNK--------SDCPC 91 (495)
Q Consensus 50 ~~~l~C~IC~~~~~~P----------v~l~CGH~F--------------------C~~Ci~~~~~~~--------~~CP~ 91 (495)
.+--+|+=|+..+.|| -.+.||--| |..|-.+|-.-. ..||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 3445799999999887 144688666 999999886532 38999
Q ss_pred CCCcCcc
Q 048199 92 CGHYLTN 98 (495)
Q Consensus 92 Cr~~~~~ 98 (495)
|+-.+..
T Consensus 184 CGP~l~l 190 (772)
T 4g9i_A 184 CGPSYRL 190 (772)
T ss_dssp TSCCEEE
T ss_pred CCceEEE
Confidence 9988765
No 481
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=47.99 E-value=18 Score=25.19 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=29.2
Q ss_pred CCCccccccccchhhhcccc---C--CC-CccchhhHHhhhc--CCCCCCCCCCcC
Q 048199 49 LDKDMLCPICMQIIKEAFLT---A--CG-HSFCYMCIITHLR--NKSDCPCCGHYL 96 (495)
Q Consensus 49 ~~~~l~C~IC~~~~~~Pv~l---~--CG-H~FC~~Ci~~~~~--~~~~CP~Cr~~~ 96 (495)
..+...| ||....... ++ . |. .-|+..|+.-... ....||.|+..-
T Consensus 13 ~~~~~~C-~C~~~~~g~-MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSCSS-EECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCCCC-EeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 3566789 899875443 44 3 55 5788899872111 124799997654
No 482
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=47.82 E-value=77 Score=22.95 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048199 179 KQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARD 214 (495)
Q Consensus 179 ~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~~ 214 (495)
.++......++.+...|..++..|+.++..|...+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666677777777777776666554
No 483
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=47.47 E-value=8.7 Score=32.56 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=29.0
Q ss_pred ccccccccchhhhcc-ccCCCCccchhhHHhhhcCC----CCCCCCCCcC
Q 048199 52 DMLCPICMQIIKEAF-LTACGHSFCYMCIITHLRNK----SDCPCCGHYL 96 (495)
Q Consensus 52 ~l~C~IC~~~~~~Pv-~l~CGH~FC~~Ci~~~~~~~----~~CP~Cr~~~ 96 (495)
+-.|.||.+-= +-+ .-.|...|+..|+..-+... -.||.|+...
T Consensus 4 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGG-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCS-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCC-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 34699998542 211 12688899999986554432 3799998754
No 484
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=47.32 E-value=1.1e+02 Score=24.73 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 168 QILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYR 211 (495)
Q Consensus 168 ~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~ 211 (495)
..+...|........+.+.+.+..++..+.....+.....+|..
T Consensus 99 ~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 99 RQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455444444555555555455555555554444444443
No 485
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.26 E-value=34 Score=19.88 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 188 IQTDLHYIKEDINAVERHRIDLYRAR 213 (495)
Q Consensus 188 ~~~~~~~l~~~i~~l~~~~~~l~~~~ 213 (495)
++.+++.|......|+.+...|++.+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 33444444445555555555554443
No 486
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=47.13 E-value=16 Score=25.46 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=27.5
Q ss_pred Cccccccccchhhh-ccccCCCCccchhhHHhhhcCCCCCCCCCCcC
Q 048199 51 KDMLCPICMQIIKE-AFLTACGHSFCYMCIITHLRNKSDCPCCGHYL 96 (495)
Q Consensus 51 ~~l~C~IC~~~~~~-Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~ 96 (495)
....|..|...+.- +....||.+||..= ++ ...-.|+.--+..
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs~H--Ry-~e~H~C~fDyk~~ 67 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCGSTFCGTH--RY-PESHECQFDFKGV 67 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECTTT--CS-TTTSCCCSCTTSC
T ss_pred cCccchhhcCcccccceEeccCCEecccc--CC-CcCCCCcCchhHH
Confidence 34679999866544 56679999999852 22 2233577655444
No 487
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=46.95 E-value=12 Score=25.38 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=27.8
Q ss_pred ccccccccchhhh-ccccCCCCccchhhHHhhhcCCCCCCCCCCcCc
Q 048199 52 DMLCPICMQIIKE-AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 97 (495)
Q Consensus 52 ~l~C~IC~~~~~~-Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~ 97 (495)
...|..|...+.- +....||.+||-.- ++. ..-.|+.--+...
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~H--R~~-e~H~C~fDyk~~g 58 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCGSTFCGSH--RYP-EKHECSFDFKEVG 58 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTSCEECSSS--CSS-TTTTCCCCCSCSC
T ss_pred CCcChhhCCcccccCeEeecCCEecccC--CCc-cccCCCcchhHHh
Confidence 4579999987554 56669999999752 222 2335776554443
No 488
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.72 E-value=94 Score=23.64 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048199 175 HCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARD 214 (495)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~~ 214 (495)
..+...+.++..+.+.+++.|+.+|..|.+++++....+.
T Consensus 56 ~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 56 MALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333344466666666666666665555444
No 489
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=46.58 E-value=4.7 Score=29.56 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=33.3
Q ss_pred CCCccccccccchh-hh--cccc--CCCCccchhhHHhhhc--CCCCCCCCCCcCccCCC
Q 048199 49 LDKDMLCPICMQII-KE--AFLT--ACGHSFCYMCIITHLR--NKSDCPCCGHYLTNNQL 101 (495)
Q Consensus 49 ~~~~l~C~IC~~~~-~~--Pv~l--~CGH~FC~~Ci~~~~~--~~~~CP~Cr~~~~~~~l 101 (495)
.+++..|.||...- .+ ..++ .|.-.|...|+..-.. ..-.||.|.......+|
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 35667899999864 12 2222 6888899999874321 12379999766544443
No 490
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=46.58 E-value=3.4 Score=28.59 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=26.7
Q ss_pred CCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcchH
Q 048199 48 ELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNF 105 (495)
Q Consensus 48 ~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~ 105 (495)
.+-+-|.||+|...+.--+ .+ ..-.||.|+..+...+-+|+.
T Consensus 4 ~LL~iL~CP~ck~~L~~~~--~~--------------~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYHQ--DK--------------QELWSRQAKLAYPIKDGIPYM 45 (68)
T ss_dssp SSSCCCBCSSSCCBCEEET--TT--------------TEEEETTTTEEEEEETTEECC
T ss_pred HHhhheECCCCCCcCeEeC--CC--------------CEEEcCCCCcEecCCCCeeee
Confidence 4556789999998665211 11 223588888888776655554
No 491
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.57 E-value=64 Score=21.68 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048199 180 QKVDELKEIQTDLHYIKEDINAVERHRIDLYRAR 213 (495)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~i~~l~~~~~~l~~~~ 213 (495)
.+....+.++.+...|..++..|+.++..|++.+
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555556666665555555443
No 492
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=46.29 E-value=2.5e+02 Score=28.45 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=41.0
Q ss_pred CeEEEEEcCCCCCEEEEecCC------------CcEEEEeCCCCcceeecccc-cCcEEEEEeecCCCCeEEEe
Q 048199 427 KLSCLSWNKFSKNRIASSDYE------------GIVTVWDVTTQQSVMEYEEH-EKRAWSVDFSRTEPSMLVSG 487 (495)
Q Consensus 427 ~i~~~~~~p~~~~~l~sg~~d------------g~v~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~g~~l~s~ 487 (495)
..=.|.|+|. +.+++.-+.+ ..+.+.+..+++...-+.++ ...++.++|+| |++.|+..
T Consensus 477 ~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC-CCCEEEEE
Confidence 3567899999 7777765533 23555566667665555555 45799999999 88877654
No 493
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.16 E-value=35 Score=18.54 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048199 188 IQTDLHYIKEDINAVERHRIDL 209 (495)
Q Consensus 188 ~~~~~~~l~~~i~~l~~~~~~l 209 (495)
+++++..|+.++..|+=++..|
T Consensus 7 lkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 494
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=46.15 E-value=11 Score=31.72 Aligned_cols=45 Identities=13% Similarity=0.384 Sum_probs=28.7
Q ss_pred cccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccC
Q 048199 53 MLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNN 99 (495)
Q Consensus 53 l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~ 99 (495)
+.|..|...+..-....=|..||..|..+.+ .++|..|++++...
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPPT 132 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHTT--SCCCTTTCCCCCSS
T ss_pred CccCCCCCccCCCceeECCEeeecCcccccc--ccccccCCCccCCC
Confidence 4566666665543223456777888776643 36899999887653
No 495
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.04 E-value=20 Score=39.06 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=31.7
Q ss_pred CeEEEEEcCCCCCEEEEecCCCcEEEEeCCCCcceeec
Q 048199 427 KLSCLSWNKFSKNRIASSDYEGIVTVWDVTTQQSVMEY 464 (495)
Q Consensus 427 ~i~~~~~~p~~~~~l~sg~~dg~v~iwd~~~~~~~~~~ 464 (495)
.+.++...++ ..++++-+.|+++|||++.++.++.+.
T Consensus 237 ~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677788877 789999999999999999999877664
No 496
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.85 E-value=49 Score=20.11 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048199 188 IQTDLHYIKEDINAVERHRIDLYRARDR 215 (495)
Q Consensus 188 ~~~~~~~l~~~i~~l~~~~~~l~~~~~~ 215 (495)
+-+++..+..+|...++++.+|++.++.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666655543
No 497
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=45.65 E-value=18 Score=25.03 Aligned_cols=39 Identities=26% Similarity=0.460 Sum_probs=23.3
Q ss_pred Cccccccccchhhh----cc-ccCCCCccchhhHHhhhcCCCCCCCCCCc
Q 048199 51 KDMLCPICMQIIKE----AF-LTACGHSFCYMCIITHLRNKSDCPCCGHY 95 (495)
Q Consensus 51 ~~l~C~IC~~~~~~----Pv-~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~ 95 (495)
....|.+|+-++.. |. -++=|..|-. +...-.||+|+..
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~------lPddw~CP~Cga~ 49 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVD------LSDSFMCPACRSP 49 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGG------SCTTCBCTTTCCB
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCCCchhh------CCCCCcCCCCCCC
Confidence 45789999988863 32 2344544421 1222379999875
No 498
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=45.58 E-value=81 Score=22.57 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048199 192 LHYIKEDINAVERHRIDLYRA 212 (495)
Q Consensus 192 ~~~l~~~i~~l~~~~~~l~~~ 212 (495)
+..-..+|+.++..+...++.
T Consensus 53 l~~h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444333333
No 499
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=45.51 E-value=7.1 Score=31.18 Aligned_cols=29 Identities=21% Similarity=0.557 Sum_probs=0.0
Q ss_pred CCccccccccchh-----hhccccCCCCccchhh
Q 048199 50 DKDMLCPICMQII-----KEAFLTACGHSFCYMC 78 (495)
Q Consensus 50 ~~~l~C~IC~~~~-----~~Pv~l~CGH~FC~~C 78 (495)
...-.|.+|...| .--+...|.|.+|..|
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCCccccccCCCcccccCCCCCCCCCCccccccc
No 500
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=45.39 E-value=3.7 Score=28.62 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred cccCCCCccccccccchhhhccccCCCCccchhhHHhhhcCCCCCCCCCCcCccCCCcch
Q 048199 45 GVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPN 104 (495)
Q Consensus 45 ~~~~~~~~l~C~IC~~~~~~Pv~l~CGH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 104 (495)
+-..+-+-|.||+|...+.--.. ...-.||.|+..+...+-+|+
T Consensus 1 md~~LL~iL~CP~ck~~L~~~~~----------------~~~LiC~~cg~~YPI~dGIPv 44 (70)
T 2js4_A 1 MESRLLDILVCPVCKGRLEFQRA----------------QAELVCNADRLAFPVRDGVPI 44 (70)
T ss_dssp CCCCCCCCCBCTTTCCBEEEETT----------------TTEEEETTTTEEEEEETTEEC
T ss_pred CChHHhhheECCCCCCcCEEeCC----------------CCEEEcCCCCceecCCCCeee
Done!