BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048204
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 6 ALNRQLLDTITSMEVEGLVDSRFRMVYSLKEANG-PFFFAELIPTFCSDAQTTIREMTLA 64
AL QL ++SM +GLVD +F+ + L++ G P F +E++ FC DA I E+
Sbjct: 5 ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64
Query: 65 LEQPVVNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAIDDRSKERCTVAVDAIRHEF 124
LEQPVVN+ +++ ++KG + +GA ++ C R D+S++ C +A+ +R++F
Sbjct: 65 LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDF 124
Query: 125 LKLHSKMDIVLQLERMIISHN 145
L +K +LQLE+ I +++
Sbjct: 125 YDLRNKFQTMLQLEQQIQAYD 145
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Query: 6 ALNRQLLDTITSMEVEGLVDSRFRMVYSLKEANG-PFFFAELIPTFCSDAQTTIREMTLA 64
AL QL ++SM GLVD +F+ + L+E G P F AE++ FC DA I E+
Sbjct: 5 ALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISELAAL 64
Query: 65 LEQPVVNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAIDDRSKERCTVAVDAIRHEF 124
L+QP+V++ +++ ++KG + +GA ++ C R D++++ C +A+ +R+EF
Sbjct: 65 LDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVVRNEF 124
Query: 125 LKLHSKMDIVL 135
L +K +L
Sbjct: 125 YDLRNKFQTML 135
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 83/137 (60%)
Query: 7 LNRQLLDTITSMEVEGLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALE 66
+ RQ +D I SM +EG +D +F + L++ N P F E++ F D++ +++++ A++
Sbjct: 6 MRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVD 65
Query: 67 QPVVNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAIDDRSKERCTVAVDAIRHEFLK 126
Q +++ +++ + KG + IGA ++ +C R+ ++++ + C + ++ E+L
Sbjct: 66 QQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLL 125
Query: 127 LHSKMDIVLQLERMIIS 143
+ +K++ +L+LE+ I++
Sbjct: 126 VKNKLETLLRLEQQIVA 142
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 82/141 (58%)
Query: 3 DKVALNRQLLDTITSMEVEGLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMT 62
D V + L D S+ +EG++DS+F + L++ + P F ++++ F D+ + +++
Sbjct: 7 DLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLS 66
Query: 63 LALEQPVVNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAIDDRSKERCTVAVDAIRH 122
L+L+Q VV++ +++ ++KG + IGA ++ AC R + ++ E C + ++
Sbjct: 67 LSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQ 126
Query: 123 EFLKLHSKMDIVLQLERMIIS 143
E+ + ++++ + +LE+ I++
Sbjct: 127 EYYLVKNRLETLFKLEQQIVA 147
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1 MADKVALNRQLLDTITSMEVEGLVDSRFRMVYSLKEANGPFF---FAELIPTFCSDAQTT 57
+ADK+ L LLD + S+ + G + F+ V E F AE++P A+
Sbjct: 214 VADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAK 273
Query: 58 IREMTLALE 66
E+ L ++
Sbjct: 274 GVEVVLPVD 282
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1 MADKVALNRQLLDTITSMEVEGLVDSRFRMVYSLKEANGPFF---FAELIPTFCSDAQTT 57
+ADK+ L LLD + S+ + G + F+ V E F AE++P A+
Sbjct: 144 VADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAK 203
Query: 58 IREMTLALE 66
E+ L ++
Sbjct: 204 GVEVVLPVD 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,814,026
Number of Sequences: 62578
Number of extensions: 140126
Number of successful extensions: 396
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 9
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)