Query 048204
Match_columns 145
No_of_seqs 108 out of 361
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 6.3E-39 2.2E-43 240.0 18.3 142 3-144 2-143 (153)
2 1yvi_A Histidine-containing ph 100.0 3.3E-38 1.1E-42 234.5 17.9 141 4-144 3-144 (149)
3 2r25_A Phosphorelay intermedia 100.0 1.5E-30 5.2E-35 196.9 11.4 118 17-136 2-164 (167)
4 2a0b_A HPT domain; sensory tra 99.9 2.8E-23 9.6E-28 149.0 11.5 117 18-139 6-123 (125)
5 1y6d_A Phosphorelay protein LU 99.8 2.5E-21 8.4E-26 139.0 -0.0 109 22-134 10-118 (120)
6 3myf_A Sensor protein; HPT, hi 99.8 6.4E-19 2.2E-23 126.2 12.0 113 19-136 1-114 (119)
7 2ooc_A Histidine phosphotransf 99.8 1.5E-18 5.1E-23 123.3 8.3 101 21-136 8-108 (113)
8 3iqt_A Signal transduction his 99.8 8.9E-18 3E-22 121.1 11.1 110 21-135 12-122 (123)
9 1sr2_A Putative sensor-like hi 99.6 9.9E-16 3.4E-20 109.3 7.9 88 38-127 28-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.6 1.4E-14 4.8E-19 100.5 8.7 91 43-133 3-102 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 6.7E-13 2.3E-17 96.9 7.7 91 44-134 3-102 (139)
12 1i5n_A Chemotaxis protein CHEA 99.4 9.6E-13 3.3E-17 96.9 7.3 89 44-132 6-103 (146)
13 2lch_A Protein OR38; structura 99.4 1.6E-12 5.4E-17 91.5 7.1 89 44-132 5-102 (113)
14 3kyj_A CHEA3, putative histidi 99.0 1E-09 3.5E-14 80.7 9.1 91 43-133 9-108 (144)
15 2lp4_A Chemotaxis protein CHEA 98.7 3.9E-08 1.3E-12 76.6 8.0 62 44-105 6-73 (225)
16 3err_A Fusion protein of micro 71.4 21 0.00072 30.7 8.9 87 38-134 116-206 (536)
17 1gp8_A Protein (scaffolding pr 68.2 7.4 0.00025 22.0 3.5 16 69-84 23-38 (40)
18 4igg_A Catenin alpha-1; asymme 68.0 72 0.0025 29.0 12.3 126 5-133 257-419 (832)
19 2cw9_A Translocase of inner mi 63.3 7.8 0.00027 28.7 4.0 61 10-79 24-85 (194)
20 2di0_A Activating signal coint 57.3 8.8 0.0003 24.5 2.9 41 23-63 12-52 (71)
21 3swh_A MUNC13-1, protein UNC-1 56.3 78 0.0027 25.5 10.8 35 1-35 122-156 (341)
22 3swf_A CGMP-gated cation chann 54.0 30 0.001 22.1 5.0 37 107-143 13-50 (74)
23 4ioe_A Secreted protein ESXB; 53.2 38 0.0013 21.0 8.9 65 70-135 9-76 (93)
24 2kmf_A Photosystem II 11 kDa p 51.7 56 0.0019 22.5 7.8 86 47-133 13-113 (115)
25 1vyk_A Oxygen-evolving enhance 50.6 67 0.0023 23.1 9.8 71 54-136 55-146 (149)
26 3ls0_A SLL1638 protein, PSBQ; 46.7 74 0.0025 22.5 11.1 80 51-139 32-130 (133)
27 3gwk_C SAG1039, putative uncha 44.2 57 0.002 20.5 9.9 68 70-138 8-78 (98)
28 2xus_A Breast cancer metastasi 43.0 19 0.00066 21.2 2.6 31 1-31 12-44 (49)
29 2nsz_A Programmed cell death p 41.0 79 0.0027 21.5 6.1 42 6-50 5-46 (129)
30 3bvo_A CO-chaperone protein HS 38.4 98 0.0034 23.0 6.6 36 96-132 166-201 (207)
31 2ion_A PDCD4, programmed cell 37.3 92 0.0031 22.0 6.1 43 5-50 6-48 (152)
32 2vs0_A Virulence factor ESXA; 37.2 73 0.0025 19.6 9.8 70 70-140 6-78 (97)
33 3vhl_A Dedicator of cytokinesi 36.8 1.5E+02 0.0052 23.2 9.3 46 49-94 169-214 (288)
34 2p1h_A APAF-1, apoptotic prote 35.7 67 0.0023 20.3 4.7 63 11-77 24-87 (94)
35 1h3o_B Transcription initiatio 35.6 63 0.0021 20.6 4.4 49 8-67 8-56 (76)
36 3zbh_A ESXA; unknown function, 35.5 79 0.0027 19.6 9.4 66 70-136 9-77 (99)
37 3uo3_A J-type CO-chaperone JAC 34.8 1.3E+02 0.0044 21.8 7.5 41 92-133 132-172 (181)
38 3p9y_A CG14216, LD40846P; phos 34.2 29 0.001 26.2 3.0 18 86-103 151-168 (198)
39 3oj5_A Ferritin family protein 33.7 1.3E+02 0.0044 21.4 7.4 79 17-95 95-177 (189)
40 2wm9_A Dedicator of cytokinesi 33.1 1.5E+02 0.005 24.5 7.4 34 47-80 307-340 (428)
41 2y6x_A PSB27, photosystem II 1 32.7 1.2E+02 0.0041 20.8 8.0 86 47-133 9-109 (113)
42 3zsu_A TLL2057 protein, cyanoq 32.6 1.3E+02 0.0044 21.1 10.1 35 98-139 93-127 (130)
43 4h3k_B RNA polymerase II subun 32.6 29 0.001 26.5 2.8 19 86-104 167-185 (214)
44 1fpo_A HSC20, chaperone protei 32.6 1.3E+02 0.0045 21.5 6.4 54 71-133 110-163 (171)
45 3swy_A Cyclic nucleotide-gated 31.9 76 0.0026 18.3 5.4 28 107-134 11-38 (46)
46 3qk9_A Mitochondrial import in 30.0 15 0.00051 28.1 0.8 56 16-80 53-109 (222)
47 2f4m_B UV excision repair prot 29.8 85 0.0029 19.1 4.1 36 27-63 12-47 (61)
48 4fla_A Regulation of nuclear P 29.1 1.6E+02 0.0054 21.0 9.4 22 5-26 42-63 (152)
49 3iuo_A ATP-dependent DNA helic 28.8 63 0.0022 21.9 3.8 38 41-79 76-113 (122)
50 3hho_A CO-chaperone protein HS 28.5 1.6E+02 0.0056 21.0 6.8 76 39-133 91-167 (174)
51 1wjt_A Transcription elongatio 27.4 44 0.0015 22.4 2.7 32 91-122 11-42 (103)
52 3do9_A UPF0302 protein BA_1542 26.4 66 0.0023 23.9 3.8 28 55-84 152-179 (188)
53 2rg8_A Programmed cell death p 26.3 1.8E+02 0.006 20.7 8.3 49 5-53 7-56 (165)
54 3a7m_A Flagellar protein FLIT; 24.8 1.7E+02 0.0058 20.0 5.9 21 93-113 13-33 (122)
55 3zta_A MTR, anti-sigma-factor 24.7 1.7E+02 0.0058 20.0 6.2 41 43-89 83-123 (146)
56 2wx3_A MRNA-decapping enzyme 1 23.2 30 0.001 20.5 1.1 24 38-61 26-49 (51)
57 1ug3_A EIF4GI, eukaryotic prot 22.8 1.7E+02 0.0057 23.1 5.8 49 5-53 8-57 (339)
58 4abx_A DNA repair protein RECN 22.6 2.1E+02 0.0072 20.3 11.0 43 21-65 14-58 (175)
59 2wx4_A DCP1, decapping protein 22.2 37 0.0012 19.8 1.3 21 38-58 24-44 (46)
60 3k1h_A HP1076, putative unchar 22.0 44 0.0015 24.4 2.0 37 72-108 14-51 (158)
61 3dyj_A Talin-1; helix bundles, 21.8 2.1E+02 0.0071 23.2 6.2 35 72-106 91-138 (332)
62 2kjg_A Archaeal protein SSO690 21.4 89 0.0031 20.7 3.2 29 22-50 2-31 (99)
63 3zrx_A AF1503 protein, osmolar 21.2 1.4E+02 0.0049 17.9 4.3 44 40-90 36-79 (115)
64 3nkz_A Flagellar protein FLIT; 20.9 2E+02 0.0068 19.6 5.2 18 94-111 17-34 (123)
65 3h3m_A Flagellar protein FLIT; 20.0 2.2E+02 0.0075 19.5 6.1 19 94-112 27-45 (126)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=6.3e-39 Score=239.98 Aligned_cols=142 Identities=24% Similarity=0.557 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHHHHhhhhhcchhHHHHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 048204 3 DKVALNRQLLDTITSMEVEGLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKI 82 (145)
Q Consensus 3 ~~~~~~~q~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~L 82 (145)
+++.|++|+..+++||+++|+||++|++|++|+++++|+|+.+||..|++|+++.+..|+.+++++++|+..++++||+|
T Consensus 2 ~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~L 81 (153)
T 3us6_A 2 EVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQF 81 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 46899999999999999999999889999999999999999999999999999999999999998767999999999999
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048204 83 KGGTLCIGAHQIALACGDLRHAIDDRSKERCTVAVDAIRHEFLKLHSKMDIVLQLERMIISH 144 (145)
Q Consensus 83 KGSSa~iGA~~L~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~rq~~~~ 144 (145)
||||+||||.+|+.+|.++|..++.++.+++...+..|+.+|..++.+|++|++++||+.+-
T Consensus 82 KGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~ 143 (153)
T 3us6_A 82 KGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAA 143 (153)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999763
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=100.00 E-value=3.3e-38 Score=234.47 Aligned_cols=141 Identities=34% Similarity=0.654 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHhhhhhcchhHHHHHHHhchhccC-hhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 048204 4 KVALNRQLLDTITSMEVEGLVDSRFRMVYSLKEANG-PFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKI 82 (145)
Q Consensus 4 ~~~~~~q~~~~~~~~~~~g~lD~~~~~L~~L~~~~~-~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~L 82 (145)
.++|++|+..|++||+++|+||++|++|++|+++++ |+|+.+||..|++|+++.|..|+.|++.+++|+..++.++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L 82 (149)
T 1yvi_A 3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 478999999999999999999999999999988888 9999999999999999999999999998767999999999999
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048204 83 KGGTLCIGAHQIALACGDLRHAIDDRSKERCTVAVDAIRHEFLKLHSKMDIVLQLERMIISH 144 (145)
Q Consensus 83 KGSSa~iGA~~L~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~rq~~~~ 144 (145)
||||+||||.+|+.+|.++|..++.++.+++..++.+|+.+|..++.+|++|++++|||++.
T Consensus 83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~ 144 (149)
T 1yvi_A 83 KGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAY 144 (149)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.97 E-value=1.5e-30 Score=196.91 Aligned_cols=118 Identities=21% Similarity=0.279 Sum_probs=110.5
Q ss_pred hhhhhcchhHH-HHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHH
Q 048204 17 SMEVEGLVDSR-FRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCIGAHQIA 95 (145)
Q Consensus 17 ~~~~~g~lD~~-~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~L~ 95 (145)
||.+.|+||+. |.+|++|++++ |+|+.+||..|++|++++|..|++|++ .++|+..++.++|+||||||||||.+|+
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~ 79 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIA 79 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 57789999985 99999999887 999999999999999999999999999 3459999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC------------HH--------------------------------HHHHHHHHHHHHHHHHHHHH
Q 048204 96 LACGDLRHAIDDRS------------KE--------------------------------RCTVAVDAIRHEFLKLHSKM 131 (145)
Q Consensus 96 ~~c~~lE~~~~~~~------------~~--------------------------------~~~~~l~~l~~ef~~~~~~L 131 (145)
++|.+||++|+.++ .+ ++...|.+++.||..++.+|
T Consensus 80 ~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~L 159 (167)
T 2r25_A 80 WVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIEL 159 (167)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888 43 78999999999999999999
Q ss_pred HHHHH
Q 048204 132 DIVLQ 136 (145)
Q Consensus 132 ~~~l~ 136 (145)
++|++
T Consensus 160 ~~~~~ 164 (167)
T 2r25_A 160 SKYYN 164 (167)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 99976
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.90 E-value=2.8e-23 Score=148.99 Aligned_cols=117 Identities=13% Similarity=0.142 Sum_probs=107.4
Q ss_pred hhhhcchhHH-HHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHH
Q 048204 18 MEVEGLVDSR-FRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCIGAHQIAL 96 (145)
Q Consensus 18 ~~~~g~lD~~-~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~L~~ 96 (145)
+-+.++||+. +.+|+.+ .|++|+.+++..|++++++.+..|+.++..+ |+..+++.+|+|||||+|+|+.+|+.
T Consensus 6 ~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~ 80 (125)
T 2a0b_A 6 SKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ 80 (125)
T ss_dssp CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4566788987 6676665 6899999999999999999999999999965 89999999999999999999999999
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048204 97 ACGDLRHAIDDRSKERCTVAVDAIRHEFLKLHSKMDIVLQLER 139 (145)
Q Consensus 97 ~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~r 139 (145)
+|..+|..++.++.+++...+..|..+|.+++..|+.|+.-++
T Consensus 81 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 123 (125)
T 2a0b_A 81 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKAT 123 (125)
T ss_dssp HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999987654
No 5
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.80 E-value=2.5e-21 Score=138.99 Aligned_cols=109 Identities=9% Similarity=0.095 Sum_probs=88.8
Q ss_pred cchhHHHHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHH
Q 048204 22 GLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCIGAHQIALACGDL 101 (145)
Q Consensus 22 g~lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~l 101 (145)
..+|+ ..|.+|+++.||+++.+++..|+++++++|..|+.+.+.+ |+..+.+.+|+|||||+|+||.+|+.+|.++
T Consensus 10 ~~~d~--~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~l 85 (120)
T 1y6d_A 10 DVLNQ--QKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAI 85 (120)
T ss_dssp TTTTT--THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred ccccH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHH
Confidence 34454 4666777778999999999999999999999999987654 6888999999999999999999999999999
Q ss_pred HHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 102 RHAIDDRSKERCTVAVDAIRHEFLKLHSKMDIV 134 (145)
Q Consensus 102 E~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~ 134 (145)
|..+|+|+...+......+...+.+++..++.+
T Consensus 86 E~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 86 DKKAKANQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp HHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 999999877755445555555566666666544
No 6
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.80 E-value=6.4e-19 Score=126.24 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=99.2
Q ss_pred hhhcchhHHHHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHH
Q 048204 19 EVEGLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCIGAHQIALAC 98 (145)
Q Consensus 19 ~~~g~lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~L~~~c 98 (145)
||..++|++ .+..+ -.|+|++..+++.+|+++.|+.+..|+.++..+ |+..+.+.+|+|||||+++||++|..+|
T Consensus 1 ~~~~~~D~~--~~l~~-~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~ 75 (119)
T 3myf_A 1 FDLHTLNWD--LCLTQ-ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC 75 (119)
T ss_dssp -CTTTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccCHH--HHHHH-hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 567788987 22222 237899999999999999999999999999965 8999999999999999999999999999
Q ss_pred HHHHHHhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 99 GDLRHAIDDRS-KERCTVAVDAIRHEFLKLHSKMDIVLQ 136 (145)
Q Consensus 99 ~~lE~~~~~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l~ 136 (145)
..+|..++.+. .+.....+..+..+...+..+++.|+.
T Consensus 76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~ 114 (119)
T 3myf_A 76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS 114 (119)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876 467788889999999999999999986
No 7
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.76 E-value=1.5e-18 Score=123.29 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=85.5
Q ss_pred hcchhHHHHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHH
Q 048204 21 EGLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCIGAHQIALACGD 100 (145)
Q Consensus 21 ~g~lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~ 100 (145)
.+.+|.. .|..+ ..|+|+|+.+|+..|++++++.+..|..+ . .|+ ++.+|+|||||+||||.+|+.+|..
T Consensus 8 ~~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a-~---~~~---~~~aH~LKGsA~~iGA~~l~~~c~~ 77 (113)
T 2ooc_A 8 SGAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT-H---PGW---KDAVHTVKGAARGVGAFNLGEVCER 77 (113)
T ss_dssp -CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT-S---TTH---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh-h---HHH---HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4567765 33333 34789999999999999999999999888 2 354 7999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 101 LRHAIDDRSKERCTVAVDAIRHEFLKLHSKMDIVLQ 136 (145)
Q Consensus 101 lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~ 136 (145)
+|..++. ....++.|+.++..++..|..+++
T Consensus 78 lE~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~ 108 (113)
T 2ooc_A 78 CEAGQES-----LEGVRTALDAALLDIAAYAHEQAL 108 (113)
T ss_dssp HHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877 566788999999999999998765
No 8
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.75 E-value=8.9e-18 Score=121.08 Aligned_cols=110 Identities=12% Similarity=0.138 Sum_probs=95.3
Q ss_pred hcchhHHHHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHH
Q 048204 21 EGLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCIGAHQIALACGD 100 (145)
Q Consensus 21 ~g~lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~ 100 (145)
.+++|++ .+..+ -.|+|++..+++.+|+++.|+.+..|+.++..+ |+..+++.+|+|||||+++||++|..+|..
T Consensus 12 ~~~~D~~--~~l~~-a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~ 86 (123)
T 3iqt_A 12 NATLDWQ--LALRQ-AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL 86 (123)
T ss_dssp GGTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCccCHH--HHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4578876 22222 237899999999999999999999999999975 789999999999999999999999999999
Q ss_pred HHHHhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 101 LRHAIDDRSK-ERCTVAVDAIRHEFLKLHSKMDIVL 135 (145)
Q Consensus 101 lE~~~~~~~~-~~~~~~l~~l~~ef~~~~~~L~~~l 135 (145)
+|..++.+.. +.....+..+..+...+..+.++|+
T Consensus 87 LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 87 IEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998764 4677788888889988998888875
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.62 E-value=9.9e-16 Score=109.35 Aligned_cols=88 Identities=11% Similarity=0.194 Sum_probs=80.0
Q ss_pred cChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q 048204 38 NGPFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAIDDRSKERCTVAV 117 (145)
Q Consensus 38 ~~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~~~~~~~~~~~~l 117 (145)
+.+..-.+++.+|++..++.+..|+.++..+ |+..+++.+|+||||++|+|+..|+.+|..+|..++.++.......+
T Consensus 28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i 105 (116)
T 1sr2_A 28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI 105 (116)
T ss_dssp HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4456778899999999999999999999965 89999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHH
Q 048204 118 DAIRHEFLKL 127 (145)
Q Consensus 118 ~~l~~ef~~~ 127 (145)
..|+..+.++
T Consensus 106 ~~L~~~l~~L 115 (116)
T 1sr2_A 106 SDIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888876654
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.56 E-value=1.4e-14 Score=100.55 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcC------CCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHh---hhcCHHHH
Q 048204 43 FAELIPTFCSDAQTTIREMTLALEQ------PVVNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAI---DDRSKERC 113 (145)
Q Consensus 43 v~~Li~~fl~ds~~~l~~L~~al~~------~~~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~---~~~~~~~~ 113 (145)
+.+++..|++++++++..|+.++.. +..++..+.+.+|+|||||+++|+..|+.+|..+|... +.+.....
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~ 82 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKIT 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4689999999999999999999841 12356799999999999999999999999999999875 67776667
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048204 114 TVAVDAIRHEFLKLHSKMDI 133 (145)
Q Consensus 114 ~~~l~~l~~ef~~~~~~L~~ 133 (145)
...++.+...+..++..+..
T Consensus 83 ~~~~~~l~~~~d~l~~~l~~ 102 (105)
T 1tqg_A 83 SDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888888888777776653
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.40 E-value=6.7e-13 Score=96.91 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=72.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhc------CCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHh---hhcCHHHHH
Q 048204 44 AELIPTFCSDAQTTIREMTLALE------QPVVNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAI---DDRSKERCT 114 (145)
Q Consensus 44 ~~Li~~fl~ds~~~l~~L~~al~------~~~~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~---~~~~~~~~~ 114 (145)
.+++..|++++++.|..|+.++. .+..++..+.+.+|+|||||+++|+..|+.+|..+|... +++......
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~ 82 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS 82 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 47899999999999999999983 122367899999999999999999999999999999865 566655455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048204 115 VAVDAIRHEFLKLHSKMDIV 134 (145)
Q Consensus 115 ~~l~~l~~ef~~~~~~L~~~ 134 (145)
..++.+...+..++..+..+
T Consensus 83 ~l~~~l~~~~D~l~~~l~~~ 102 (139)
T 2ld6_A 83 DLLDKIFAGVDMITRMVDKI 102 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665543
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.37 E-value=9.6e-13 Score=96.88 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=69.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhc---CCCC---CHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHH---hhhcCHHHHH
Q 048204 44 AELIPTFCSDAQTTIREMTLALE---QPVV---NYHEMEELCMKIKGGTLCIGAHQIALACGDLRHA---IDDRSKERCT 114 (145)
Q Consensus 44 ~~Li~~fl~ds~~~l~~L~~al~---~~~~---D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~---~~~~~~~~~~ 114 (145)
.+++..|+++++++|..|+.++. .++. ++..+.+.+|+|||||+++|+..|+.+|..+|.. .+.+......
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~ 85 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 47899999999999999999982 2222 3578999999999999999999999999999987 6666654445
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048204 115 VAVDAIRHEFLKLHSKMD 132 (145)
Q Consensus 115 ~~l~~l~~ef~~~~~~L~ 132 (145)
..++.+...+..++..+.
T Consensus 86 ~l~~~l~~~~D~l~~~l~ 103 (146)
T 1i5n_A 86 DIINLFLETKDIMQEQLD 103 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555544
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.35 E-value=1.6e-12 Score=91.46 Aligned_cols=89 Identities=11% Similarity=0.188 Sum_probs=71.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHH---hhhcCHHHHH
Q 048204 44 AELIPTFCSDAQTTIREMTLALEQ---PVVN---YHEMEELCMKIKGGTLCIGAHQIALACGDLRHA---IDDRSKERCT 114 (145)
Q Consensus 44 ~~Li~~fl~ds~~~l~~L~~al~~---~~~D---~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~---~~~~~~~~~~ 114 (145)
.+++..|+++++++|..|+.++.. ++.| +..+.+.+|+|||||+++|+..++.+|..+|.. .+.+......
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~ 84 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 588999999999999999998731 2223 457999999999999999999999999999974 4566666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048204 115 VAVDAIRHEFLKLHSKMD 132 (145)
Q Consensus 115 ~~l~~l~~ef~~~~~~L~ 132 (145)
..++.+...+..+...+.
T Consensus 85 ~l~~~l~~~~d~l~~~l~ 102 (113)
T 2lch_A 85 DLIDKVKKKLDMVTRELD 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776666655
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.04 E-value=1e-09 Score=80.69 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhc---CCCCC---HHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHh---hhcCHHHH
Q 048204 43 FAELIPTFCSDAQTTIREMTLALE---QPVVN---YHEMEELCMKIKGGTLCIGAHQIALACGDLRHAI---DDRSKERC 113 (145)
Q Consensus 43 v~~Li~~fl~ds~~~l~~L~~al~---~~~~D---~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~---~~~~~~~~ 113 (145)
..+++..|+++++++|..|+..+. +++.| ...+.+.+|+|||||+.+|...+..+|-.+|..- +++...--
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 468899999999999999999863 33334 3478999999999999999999999999999863 45544333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048204 114 TVAVDAIRHEFLKLHSKMDI 133 (145)
Q Consensus 114 ~~~l~~l~~ef~~~~~~L~~ 133 (145)
...++.+-..+..+...+..
T Consensus 89 ~~l~dlll~~~D~l~~lv~~ 108 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLEE 108 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444443
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.71 E-value=3.9e-08 Score=76.64 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=53.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHh
Q 048204 44 AELIPTFCSDAQTTIREMTLAL---EQPVVNY---HEMEELCMKIKGGTLCIGAHQIALACGDLRHAI 105 (145)
Q Consensus 44 ~~Li~~fl~ds~~~l~~L~~al---~~~~~D~---~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~ 105 (145)
.+++..|++++.++|..|+..+ ..++.|. ..+.+.+|+|||||+.+|...++.+|..+|..-
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l 73 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLL 73 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 4678999999999999999975 3444454 467889999999999999999999999999873
No 16
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=71.37 E-value=21 Score=30.74 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=57.3
Q ss_pred cChhhHHHHHHHHHHh--HHHHHHHHH-HHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHhh-hcCHHHH
Q 048204 38 NGPFFFAELIPTFCSD--AQTTIREMT-LALEQPVVNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAID-DRSKERC 113 (145)
Q Consensus 38 ~~~~fv~~Li~~fl~d--s~~~l~~L~-~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~~-~~~~~~~ 113 (145)
++++|+..|++ |=.| +++.+..|+ ..+...+-+++.++ .+|.-|..|..++..+..+.. .......
T Consensus 116 ~~~~Fl~~L~~-fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~---------~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pL 185 (536)
T 3err_A 116 MRENFIPTIVN-FSAEEISDAIREKMKKNYMSNPSYNYEIVN---------RASLAAGPMVKWAIAQLNYADMLKRVEPL 185 (536)
T ss_dssp GCTTHHHHHHH-CCGGGCCHHHHHHHHHHTTTSTTCSHHHHH---------HHCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHh-cCcccCCHHHHHHHHHHhcCCCCCCHHHHH---------HHHHHHHHHHHHHHhcchhHHHHHhhhhh
Confidence 35678877765 5333 466778886 57776544555554 345567778888888887766 3345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048204 114 TVAVDAIRHEFLKLHSKMDIV 134 (145)
Q Consensus 114 ~~~l~~l~~ef~~~~~~L~~~ 134 (145)
...+..++.+...+...|+..
T Consensus 186 k~eLk~lE~eL~e~e~eL~~l 206 (536)
T 3err_A 186 RNELQKLEDDAKDNQQKLEAL 206 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777654
No 17
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=68.23 E-value=7.4 Score=21.98 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHhhh
Q 048204 69 VVNYHEMEELCMKIKG 84 (145)
Q Consensus 69 ~~D~~~l~~~aH~LKG 84 (145)
.+||+.++.+=|+||+
T Consensus 23 eGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 23 KGDVETYRKLKAKLKG 38 (40)
T ss_dssp TSCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 3599999999999986
No 18
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=67.95 E-value=72 Score=29.04 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHh-hhhhcc----------hhHHHHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHH
Q 048204 5 VALNRQLLDTITS-MEVEGL----------VDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQPVVNYH 73 (145)
Q Consensus 5 ~~~~~q~~~~~~~-~~~~g~----------lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~ 73 (145)
..+++.|.++++. |...|- ++.=...++.|...-....+..+.+.|++.+..+. .|..|...| |-.
T Consensus 257 ~~vrq~L~dLl~~~~~~~g~~~~s~~l~~ai~~l~~k~~dL~r~L~~AvvdqvsD~F~dt~~pL~-~Li~Aa~~g--~ee 333 (832)
T 4igg_A 257 NAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLL-VLIEAAKNG--NEK 333 (832)
T ss_dssp HHHHHHHHHHHHHHHTCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHH-HHHHHHHTT--CHH
T ss_pred HHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH-HHHHHHHcC--cHH
Confidence 3566677777753 222232 22112344445443445567777777766554444 455555543 566
Q ss_pred HHHHHHHHhh--------------hhhhhh-cHHHHHHHHHHHHHHhh-----------hcCHHHHHHHHHHHHHHHHHH
Q 048204 74 EMEELCMKIK--------------GGTLCI-GAHQIALACGDLRHAID-----------DRSKERCTVAVDAIRHEFLKL 127 (145)
Q Consensus 74 ~l~~~aH~LK--------------GSSa~i-GA~~L~~~c~~lE~~~~-----------~~~~~~~~~~l~~l~~ef~~~ 127 (145)
.+...+..|- +.|.|= |...+...|..+|.+++ .-+...+.+-|+.++++|...
T Consensus 334 ~~~e~a~~F~eha~~lvevA~Lv~~~s~ne~~v~~i~~aa~~le~L~PQVI~Aar~L~~~P~Sk~A~Enle~f~~~W~~~ 413 (832)
T 4igg_A 334 EVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQ 413 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 6655555444 333221 34455566666666544 223455677788888888776
Q ss_pred HHHHHH
Q 048204 128 HSKMDI 133 (145)
Q Consensus 128 ~~~L~~ 133 (145)
...|..
T Consensus 414 v~~L~~ 419 (832)
T 4igg_A 414 VRVLTD 419 (832)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 19
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=63.25 E-value=7.8 Score=28.74 Aligned_cols=61 Identities=11% Similarity=0.222 Sum_probs=44.3
Q ss_pred HHHHHHHhhhhhcchhHHHHHHHhchhccChhhHHHHHHHHHHhHHHH-HHHHHHHhcCCCCCHHHHHHHH
Q 048204 10 QLLDTITSMEVEGLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTT-IREMTLALEQPVVNYHEMEELC 79 (145)
Q Consensus 10 q~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~-l~~L~~al~~~~~D~~~l~~~a 79 (145)
.+.+++.++|.+.=....+.+|+.+ +|+|= ...|+..+... +..|-.|...+ |.+.|+.++
T Consensus 24 ~~~~~~~~~f~~s~~~~~l~~i~~~----dp~Fd---~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~~ 85 (194)
T 2cw9_A 24 KVTDLLGGLFSKTEMSEVLTEILRV----DPAFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDWC 85 (194)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHH----CTTCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHB
T ss_pred hhhhhhccccCCCHHHHHHHHHHhh----CCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhc
Confidence 4455566666666555546666665 56775 58899999998 69999999976 899888764
No 20
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=57.28 E-value=8.8 Score=24.45 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=34.5
Q ss_pred chhHHHHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHH
Q 048204 23 LVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTL 63 (145)
Q Consensus 23 ~lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~ 63 (145)
.+++.+.+++.|-..-|..|+..++..|=.+.++.+..|=+
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 35556889999998899999999999999999998877643
No 21
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=56.27 E-value=78 Score=25.53 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=25.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhcchhHHHHHHHhch
Q 048204 1 MADKVALNRQLLDTITSMEVEGLVDSRFRMVYSLK 35 (145)
Q Consensus 1 ~~~~~~~~~q~~~~~~~~~~~g~lD~~~~~L~~L~ 35 (145)
|||+..+|.+|..+..+|--..+.+..-..+..|+
T Consensus 122 lNNie~lR~~L~~l~~~l~~~~l~~~~~~~~~~lq 156 (341)
T 3swh_A 122 MNNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQ 156 (341)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 58999999999999999965555443344444444
No 22
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=53.96 E-value=30 Score=22.15 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=27.0
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh
Q 048204 107 DRSKERCTVAVDAIRHEFLKLHSKMDI-VLQLERMIIS 143 (145)
Q Consensus 107 ~~~~~~~~~~l~~l~~ef~~~~~~L~~-~l~~~rq~~~ 143 (145)
+.+.+.+...|.+|-.||.....+|++ .-++|.+.++
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445677778888999999988888873 4566666553
No 23
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=53.20 E-value=38 Score=21.02 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHhh--hc-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 70 VNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAID--DR-SKERCTVAVDAIRHEFLKLHSKMDIVL 135 (145)
Q Consensus 70 ~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~~--~~-~~~~~~~~l~~l~~ef~~~~~~L~~~l 135 (145)
+|++.++..|-.+++.+.+|-. .+..+...+..+.. .| ........+......+.++...|..+-
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~ 76 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQS-QINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGIS 76 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999888865 36677777776643 11 112223334444444444444444433
No 24
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=51.69 E-value=56 Score=22.51 Aligned_cols=86 Identities=13% Similarity=0.131 Sum_probs=53.6
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh-----------hhhcHHHHHHHHHHHHHH----hhhcCHH
Q 048204 47 IPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGT-----------LCIGAHQIALACGDLRHA----IDDRSKE 111 (145)
Q Consensus 47 i~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSS-----------a~iGA~~L~~~c~~lE~~----~~~~~~~ 111 (145)
-..|..|+-..+..|+.+|+.+ .|-+..++....+|-+. ..-|-.....+-..|..+ ...++.+
T Consensus 13 ~~~Y~~dT~~Vv~~lr~~l~l~-~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s~g~~P 91 (115)
T 2kmf_A 13 TGNYSQDTLTVIATLREAIDLP-QDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYGARP 91 (115)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSC-TTCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CccHHHHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCC
Confidence 4568999999999999998854 35455555555555433 233333333333334333 2234433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048204 112 RCTVAVDAIRHEFLKLHSKMDI 133 (145)
Q Consensus 112 ~~~~~l~~l~~ef~~~~~~L~~ 133 (145)
-.....++|..||.++..+|.+
T Consensus 92 lPek~k~Rl~~el~~AE~al~r 113 (115)
T 2kmf_A 92 IPEKLKKRLQLEFTQAERSIER 113 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 3456777999999999888864
No 25
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=50.61 E-value=67 Score=23.05 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhc---------------------HHHHHHHHHHHHHHhhhcCHHH
Q 048204 54 AQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCIG---------------------AHQIALACGDLRHAIDDRSKER 112 (145)
Q Consensus 54 s~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iG---------------------A~~L~~~c~~lE~~~~~~~~~~ 112 (145)
+.+.|..++..|+.. ++..++...| |.++.++ |..|..--.+|..+++.++...
T Consensus 55 ~a~~i~~vk~lI~k~--~W~~vrn~LR---~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~ 129 (149)
T 1vyk_A 55 SASEILNVKQFIDRK--AWPSLQNDLR---LRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTE 129 (149)
T ss_dssp HHHHHHTTHHHHHTT--CHHHHHHHHH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhhc--cHHHHHHHHH---HhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 466667788888865 6877775544 4444333 1233344444555666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 113 CTVAVDAIRHEFLKLHSKMDIVLQ 136 (145)
Q Consensus 113 ~~~~l~~l~~ef~~~~~~L~~~l~ 136 (145)
+.. .|..+...|+.|+.
T Consensus 130 a~~-------~Y~~t~~~ld~vl~ 146 (149)
T 1vyk_A 130 AEK-------YYGQTVSNINEVLA 146 (149)
T ss_dssp HHH-------HHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHH
Confidence 544 55556666665543
No 26
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=46.67 E-value=74 Score=22.47 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=47.7
Q ss_pred HHhHHHHHHH-HHHHhcCCCCCHHHHHHHHHHhhhhh--------hhh------cHH----HHHHHHHHHHHHhhhcCHH
Q 048204 51 CSDAQTTIRE-MTLALEQPVVNYHEMEELCMKIKGGT--------LCI------GAH----QIALACGDLRHAIDDRSKE 111 (145)
Q Consensus 51 l~ds~~~l~~-L~~al~~~~~D~~~l~~~aH~LKGSS--------a~i------GA~----~L~~~c~~lE~~~~~~~~~ 111 (145)
+.++.+++.+ |...|+.+ |+..+|...|.-=|.- .|+ -|. .|.+--.+|-.+++.+|..
T Consensus 32 i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~ 109 (133)
T 3ls0_A 32 IAVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRNGS 109 (133)
T ss_dssp HHHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhHHHHHHHhhhc--chHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3467788888 88888865 8988888877433221 111 111 1222222333445555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048204 112 RCTVAVDAIRHEFLKLHSKMDIVLQLER 139 (145)
Q Consensus 112 ~~~~~l~~l~~ef~~~~~~L~~~l~~~r 139 (145)
.....|.++...|..|+++-.
T Consensus 110 -------~a~k~Y~~a~adfdafl~liP 130 (133)
T 3ls0_A 110 -------QAKIQYQEALADFDSFLNLLP 130 (133)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHHHHHHHhcC
Confidence 445678888888888887643
No 27
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=44.19 E-value=57 Score=20.46 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHhh--hcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 70 VNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAID--DRS-KERCTVAVDAIRHEFLKLHSKMDIVLQLE 138 (145)
Q Consensus 70 ~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~~--~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l~~~ 138 (145)
+|++.++..|-.++..+.+|-. .+..+...+..+.. .|. .+.....+.+....+.++...|..+-+.-
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L 78 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTE-VLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQL 78 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998888754 35666666666543 232 24445555555555555555555444333
No 28
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=43.02 E-value=19 Score=21.24 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=22.4
Q ss_pred CchHHHHHHHHHHHHHhhhhhcc--hhHHHHHH
Q 048204 1 MADKVALNRQLLDTITSMEVEGL--VDSRFRMV 31 (145)
Q Consensus 1 ~~~~~~~~~q~~~~~~~~~~~g~--lD~~~~~L 31 (145)
|++++.|..|-..+.-.|+++.+ |+.++.+|
T Consensus 12 ld~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888877 55534443
No 29
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.04 E-value=79 Score=21.54 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhhcchhHHHHHHHhchhccChhhHHHHHHHH
Q 048204 6 ALNRQLLDTITSMEVEGLVDSRFRMVYSLKEANGPFFFAELIPTF 50 (145)
Q Consensus 6 ~~~~q~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~fv~~Li~~f 50 (145)
.++.++..+++-.+..|-+++...-+++|. -|.|..+++...
T Consensus 5 el~kki~~ll~EY~~~~D~~Ea~~cl~eL~---~p~f~~e~V~~~ 46 (129)
T 2nsz_A 5 HLVKEIDMLLKEYLLSGDISEAEHCLKELE---VPHFHHELVYEA 46 (129)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHT---CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhC---CCccHHHHHHHH
Confidence 578889999999999999999888888884 556666555543
No 30
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=38.40 E-value=98 Score=23.02 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 96 LACGDLRHAIDDRSKERCTVAVDAIRHEFLKLHSKMD 132 (145)
Q Consensus 96 ~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~ 132 (145)
++...|..+-..++++.+...+.+++= |.++...++
T Consensus 166 ~~~~~l~~~~~~~d~~~A~~~v~kL~y-~~kl~~~i~ 201 (207)
T 3bvo_A 166 EFTDNVSSAFEQDDFEEAKEILTKMRY-FSNIEEKIK 201 (207)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333444444456777777777777765 445555544
No 31
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.29 E-value=92 Score=21.97 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhhhcchhHHHHHHHhchhccChhhHHHHHHHH
Q 048204 5 VALNRQLLDTITSMEVEGLVDSRFRMVYSLKEANGPFFFAELIPTF 50 (145)
Q Consensus 5 ~~~~~q~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~fv~~Li~~f 50 (145)
..++.++..+++-.+..|-+++...-+++|. -|.|..++|...
T Consensus 6 eel~kki~~lL~EY~~~~D~~EA~~cl~EL~---~p~f~~e~V~~~ 48 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSGDISEAEHCLKELE---VPHFHHELVYEA 48 (152)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT---CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC---CCcchHHHHHHH
Confidence 3578889999999999999999888888884 456665555543
No 32
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=37.23 E-value=73 Score=19.65 Aligned_cols=70 Identities=9% Similarity=0.006 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHhh--hcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048204 70 VNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAID--DRS-KERCTVAVDAIRHEFLKLHSKMDIVLQLERM 140 (145)
Q Consensus 70 ~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~~--~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l~~~rq 140 (145)
+|++.++..|-.+++.+..|-. .+..+...+..+.. .|. .+.....+.+....+.++...|..+-+.-++
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~-~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQ-ILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998887754 35555555555433 222 2344555556666666666666554444333
No 33
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine nucleotide exchang factor, GTPA signaling protein; 2.08A {Mus musculus}
Probab=36.84 E-value=1.5e+02 Score=23.19 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=22.5
Q ss_pred HHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHH
Q 048204 49 TFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCIGAHQI 94 (145)
Q Consensus 49 ~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iGA~~L 94 (145)
.=+++......+|..++.+.+.|...|.......=++..|=|-...
T Consensus 169 ~Aie~i~~k~~eL~~~~~~~~~d~~~L~~~L~G~Vd~~VngG~~~y 214 (288)
T 3vhl_A 169 VAIEDMKKKTLQLAVATHQEPPDAKMLQMVLQGSVGATVNQGPLEV 214 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHCCSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHhhheEeccccccCHHHH
Confidence 3344555555666666555455655544443332223445554443
No 34
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=35.67 E-value=67 Score=20.32 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=39.3
Q ss_pred HHHHHHhhhhhcchhHH-HHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHH
Q 048204 11 LLDTITSMEVEGLVDSR-FRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEE 77 (145)
Q Consensus 11 ~~~~~~~~~~~g~lD~~-~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~ 77 (145)
...++..+...|++... .+.++.- ....+=+..|++.-..-++......-.++... ++..+.+
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~--~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~ 87 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNE--PTQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAA 87 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTS--SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHH
Confidence 34566667777777776 6666653 23445666777777666777777777777642 4544443
No 35
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=35.57 E-value=63 Score=20.57 Aligned_cols=49 Identities=10% Similarity=0.193 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhhhcchhHHHHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Q 048204 8 NRQLLDTITSMEVEGLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQ 67 (145)
Q Consensus 8 ~~q~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~ 67 (145)
+.+|..+++.+--...+|. +-.+++.++.+.|+++.-..--.+.+--..
T Consensus 8 k~~L~~Lv~~idp~~~ld~-----------~vee~ll~lADdFV~~V~~~ac~lAKhR~s 56 (76)
T 1h3o_B 8 KKKLQDLVREVDPNEQLDE-----------DVEEMLLQIADDFIESVVTAACQLARHRKS 56 (76)
T ss_dssp HHHHHHHHHHHCSSCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3556666666643333443 245688899999999988877777665444
No 36
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=35.47 E-value=79 Score=19.55 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHhh--hcC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 70 VNYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAID--DRS-KERCTVAVDAIRHEFLKLHSKMDIVLQ 136 (145)
Q Consensus 70 ~D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~~--~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l~ 136 (145)
+|++.++..|-.++..+..|-. .+..+...+..+.. .|. .+.....+.+....+.++...|..+-+
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~-~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~ 77 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTE-LIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQ 77 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888887776643 24445555555432 121 122333444444445555555444433
No 37
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=34.85 E-value=1.3e+02 Score=21.84 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 92 HQIALACGDLRHAIDDRSKERCTVAVDAIRHEFLKLHSKMDI 133 (145)
Q Consensus 92 ~~L~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~ 133 (145)
.++..+...|+.+-..++++.+...+.+++= |..+...++.
T Consensus 132 ~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y-~~kl~~~ik~ 172 (181)
T 3uo3_A 132 ERIQDIEAQLGQCYNDKDYAAAVKLTVELKY-WYNLAKAFKD 172 (181)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 5677777888888888888888888888765 5555555543
No 38
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=34.20 E-value=29 Score=26.23 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=16.5
Q ss_pred hhhhcHHHHHHHHHHHHH
Q 048204 86 TLCIGAHQIALACGDLRH 103 (145)
Q Consensus 86 Sa~iGA~~L~~~c~~lE~ 103 (145)
-|.+||..+.++|..|+.
T Consensus 151 eA~~Ga~~ileL~~~l~~ 168 (198)
T 3p9y_A 151 DALMGAFVITDMINMMAK 168 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999999999999987
No 39
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=33.69 E-value=1.3e+02 Score=21.45 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=33.1
Q ss_pred hhhhhcchhHHHHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhhhhhhhhcHH
Q 048204 17 SMEVEGLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTLALEQ----PVVNYHEMEELCMKIKGGTLCIGAH 92 (145)
Q Consensus 17 ~~~~~g~lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~al~~----~~~D~~~l~~~aH~LKGSSa~iGA~ 92 (145)
.+..+..+...+.++..+-+..++.-...++..|+.+-.+.+..++..+.. +..-|..=..++-..+++++.-||+
T Consensus 95 ~l~~E~~~~~~~~~l~~~A~~~~D~~t~~~l~~~l~eqe~~~~~l~~~l~~l~~~g~~l~~~d~~l~~~~~~~~~~~~~~ 174 (189)
T 3oj5_A 95 ALDQERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRVADRAGANLFELENFVAREVDVAPAASGAP 174 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHHhhCCCCCCCCCC
Confidence 334444444444555555444343344566777888877777777766541 0001111223445556656666666
Q ss_pred HHH
Q 048204 93 QIA 95 (145)
Q Consensus 93 ~L~ 95 (145)
..+
T Consensus 175 ~~~ 177 (189)
T 3oj5_A 175 HAA 177 (189)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 40
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=33.07 E-value=1.5e+02 Score=24.46 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=20.7
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 048204 47 IPTFCSDAQTTIREMTLALEQPVVNYHEMEELCM 80 (145)
Q Consensus 47 i~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH 80 (145)
|+.=+++......+|..++.+++.|...+.....
T Consensus 307 iE~Aie~i~~k~~eL~~~~~~~~~d~~~L~~~Lq 340 (428)
T 2wm9_A 307 IEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQ 340 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 4455666666677777776665566665554433
No 41
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=32.67 E-value=1.2e+02 Score=20.76 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=52.8
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh-----------hhhhcHHHHHHHHHHHHHHh----hhcCHH
Q 048204 47 IPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGG-----------TLCIGAHQIALACGDLRHAI----DDRSKE 111 (145)
Q Consensus 47 i~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGS-----------Sa~iGA~~L~~~c~~lE~~~----~~~~~~ 111 (145)
-..|..|+-..+..|+.+|+.+ .|-+...+....+|-+ ...-|-.....+-..|..++ ..++.+
T Consensus 9 ~~~Y~~dT~~Vv~~lr~~l~l~-~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~g~~P 87 (113)
T 2y6x_A 9 TGNFREDTLALISSLREAIALP-ENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSYPNRP 87 (113)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSC-TTCTTHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred CccHHHHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCC
Confidence 3568899999999999998853 2434444444444432 23334444444444444332 234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048204 112 RCTVAVDAIRHEFLKLHSKMDI 133 (145)
Q Consensus 112 ~~~~~l~~l~~ef~~~~~~L~~ 133 (145)
-.....++|..||.++..+|.+
T Consensus 88 lPek~k~Rl~~el~~AE~al~R 109 (113)
T 2y6x_A 88 LPEKLKARLEQEFKQVELALDR 109 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 4466778999999999988874
No 42
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=32.63 E-value=1.3e+02 Score=21.12 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=23.1
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048204 98 CGDLRHAIDDRSKERCTVAVDAIRHEFLKLHSKMDIVLQLER 139 (145)
Q Consensus 98 c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~r 139 (145)
-.+|-.+++.+|...+ ...|.++...|..|+++-.
T Consensus 93 L~~LD~AA~~~n~~~a-------~k~Y~~a~adfdafl~liP 127 (130)
T 3zsu_A 93 FLKIDQGADLDSVTVA-------QEGFREAEADFKAYLNSLP 127 (130)
T ss_dssp HHHHHHHHHTTCHHHH-------HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCHHHH-------HHHHHHHHHHHHHHHHhcc
Confidence 3445555677766644 4578888888888887643
No 43
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=32.60 E-value=29 Score=26.54 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=16.6
Q ss_pred hhhhcHHHHHHHHHHHHHH
Q 048204 86 TLCIGAHQIALACGDLRHA 104 (145)
Q Consensus 86 Sa~iGA~~L~~~c~~lE~~ 104 (145)
.|.+||..+.++|..||..
T Consensus 167 eA~~Ga~~ileL~~~le~~ 185 (214)
T 4h3k_B 167 EATLGAFLICELCQCIQHT 185 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999864
No 44
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=32.58 E-value=1.3e+02 Score=21.47 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 71 NYHEMEELCMKIKGGTLCIGAHQIALACGDLRHAIDDRSKERCTVAVDAIRHEFLKLHSKMDI 133 (145)
Q Consensus 71 D~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~ 133 (145)
|...+..+...++ .++..+...|...-..++++.+...+.+++= |.++...++.
T Consensus 110 d~~~l~~l~~~~~--------~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y-~~kl~~~i~~ 163 (171)
T 1fpo_A 110 DEARLESFIKRVK--------KMFDTRHQLMVEQLDNETWDAAADTCRKLRF-LDKLRSSAEQ 163 (171)
T ss_dssp CHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4445555544433 3556666667666677789888888888776 5566666654
No 45
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=31.92 E-value=76 Score=18.30 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=20.8
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048204 107 DRSKERCTVAVDAIRHEFLKLHSKMDIV 134 (145)
Q Consensus 107 ~~~~~~~~~~l~~l~~ef~~~~~~L~~~ 134 (145)
+++.+.....|.+|-.||.....+|.+-
T Consensus 11 e~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 11 GSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888887743
No 46
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=30.03 E-value=15 Score=28.12 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=29.9
Q ss_pred HhhhhhcchhHHHHHHHhchhccChhhHHHHHHHHHHhHHHH-HHHHHHHhcCCCCCHHHHHHHHH
Q 048204 16 TSMEVEGLVDSRFRMVYSLKEANGPFFFAELIPTFCSDAQTT-IREMTLALEQPVVNYHEMEELCM 80 (145)
Q Consensus 16 ~~~~~~g~lD~~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~-l~~L~~al~~~~~D~~~l~~~aH 80 (145)
.++|.+.=+...+.+++++ +|.|- ...|+.++..- +..|-.|...+ |...|+.+++
T Consensus 53 ~~~f~~te~a~~l~~Ik~~----DPsF~---~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~lls 109 (222)
T 3qk9_A 53 GGFFAETESSRVYSQFKLM----DPTFS---NESFTRHLREYIVPEILEAYVKG--DVKVLKKWFS 109 (222)
T ss_dssp -------CCHHHHTTCC---------CC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBC
T ss_pred ccccCCCHHHHHHHHHHHh----CCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhhcC
Confidence 3344444444333344433 67776 57888888888 55688887765 8888887643
No 47
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=29.76 E-value=85 Score=19.07 Aligned_cols=36 Identities=8% Similarity=0.329 Sum_probs=28.9
Q ss_pred HHHHHHhchhccChhhHHHHHHHHHHhHHHHHHHHHH
Q 048204 27 RFRMVYSLKEANGPFFFAELIPTFCSDAQTTIREMTL 63 (145)
Q Consensus 27 ~~~~L~~L~~~~~~~fv~~Li~~fl~ds~~~l~~L~~ 63 (145)
+|.+|+.+-.. +|+.+..|+...-..-|++++.|.+
T Consensus 12 qf~~lR~~vq~-NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 12 QFQQMRQIIQQ-NPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHHH-CGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 48888888764 8999999999888888888876654
No 48
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=29.09 E-value=1.6e+02 Score=21.02 Aligned_cols=22 Identities=5% Similarity=0.179 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhhhcchhH
Q 048204 5 VALNRQLLDTITSMEVEGLVDS 26 (145)
Q Consensus 5 ~~~~~q~~~~~~~~~~~g~lD~ 26 (145)
++.|++|..++-.+.|..+|+.
T Consensus 42 a~vrq~Ia~LP~eVsd~s~l~k 63 (152)
T 4fla_A 42 ATVRQKIASLPQEVQDVSLLEK 63 (152)
T ss_dssp HHHHHHHHTSCGGGTCGGGGGG
T ss_pred HHHHHHHHcCCccccCHHHHHH
Confidence 4566667766666666666653
No 49
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=28.85 E-value=63 Score=21.85 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 048204 41 FFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELC 79 (145)
Q Consensus 41 ~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~a 79 (145)
+-+.++...|.......|..+.+++.. +.+|..+|-.-
T Consensus 76 ~~~~~I~~~~~~~~~~~Lk~i~e~l~~-~~sy~eIRlv~ 113 (122)
T 3iuo_A 76 DHLEDIFEYFKESTTDSLEEAMQELGK-DYSEEEIRLVR 113 (122)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHTT-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHccC-cCCHHHHHHHH
Confidence 444566666666556668888888864 46788877553
No 50
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=28.51 E-value=1.6e+02 Score=21.02 Aligned_cols=76 Identities=11% Similarity=0.147 Sum_probs=47.5
Q ss_pred ChhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q 048204 39 GPFFFAELIPTFCSDAQTTIREMTLALEQPVVN-YHEMEELCMKIKGGTLCIGAHQIALACGDLRHAIDDRSKERCTVAV 117 (145)
Q Consensus 39 ~~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D-~~~l~~~aH~LKGSSa~iGA~~L~~~c~~lE~~~~~~~~~~~~~~l 117 (145)
+|+|+.++++.- +.|..+-.. .| -.++..+...++. ++..+...|+..-..++++.+...+
T Consensus 91 d~~fLme~me~r--------E~le~~~~~--~d~~~~l~~l~~~~~~--------~~~~~~~~l~~~~~~~d~~~A~~~~ 152 (174)
T 3hho_A 91 DPMFLMEQMELR--------EELESVTAC--ADPEAALVAFDTKVTA--------MQRHYLAQLQGQLAQSEWLAAADQI 152 (174)
T ss_dssp CHHHHHHHHHHH--------HHHHHHTSS--SSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHH--------HHHHHHhhc--cchHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 467776655442 334444332 25 4556666666653 5677777888888888998888777
Q ss_pred HHHHHHHHHHHHHHHH
Q 048204 118 DAIRHEFLKLHSKMDI 133 (145)
Q Consensus 118 ~~l~~ef~~~~~~L~~ 133 (145)
.+++= |.++...++.
T Consensus 153 ~kL~f-~~kl~~~i~~ 167 (174)
T 3hho_A 153 RKLKF-IAKLKNEVER 167 (174)
T ss_dssp HHHHH-HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHH
Confidence 77765 5555555554
No 51
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=27.38 E-value=44 Score=22.40 Aligned_cols=32 Identities=6% Similarity=0.144 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q 048204 91 AHQIALACGDLRHAIDDRSKERCTVAVDAIRH 122 (145)
Q Consensus 91 A~~L~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 122 (145)
...|..++..|+.+....+.+.+..+|..|+.
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~ 42 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGALDLLKKLNS 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 56778888888887776666777777777743
No 52
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=26.42 E-value=66 Score=23.91 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q 048204 55 QTTIREMTLALEQPVVNYHEMEELCMKIKG 84 (145)
Q Consensus 55 ~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 84 (145)
.++...|..||+.+ |-+++.+++..||-
T Consensus 152 ~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~ 179 (188)
T 3do9_A 152 ERLLKQIDEALDKQ--DKEAFHRLTAELKM 179 (188)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 56789999999976 89999999998874
No 53
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.26 E-value=1.8e+02 Score=20.69 Aligned_cols=49 Identities=12% Similarity=-0.015 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhhhcchhHHHHHHHhchhc-cChhhHHHHHHHHHHh
Q 048204 5 VALNRQLLDTITSMEVEGLVDSRFRMVYSLKEA-NGPFFFAELIPTFCSD 53 (145)
Q Consensus 5 ~~~~~q~~~~~~~~~~~g~lD~~~~~L~~L~~~-~~~~fv~~Li~~fl~d 53 (145)
..+++....++.-.|..|-+++....+++|..+ -.|.||..+|+.-++-
T Consensus 7 ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldr 56 (165)
T 2rg8_A 7 RAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEG 56 (165)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcC
Confidence 467888889999999999999988888888532 2345665555554443
No 54
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=24.84 E-value=1.7e+02 Score=19.96 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhhcCHHHH
Q 048204 93 QIALACGDLRHAIDDRSKERC 113 (145)
Q Consensus 93 ~L~~~c~~lE~~~~~~~~~~~ 113 (145)
.|..+..+|=.+++.|+++..
T Consensus 13 ~i~~lS~~ML~aA~~gdWD~L 33 (122)
T 3a7m_A 13 RIALLSQSLLELAQRGEWDLL 33 (122)
T ss_dssp HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHH
Confidence 455566666666666666544
No 55
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=24.73 E-value=1.7e+02 Score=19.98 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhh
Q 048204 43 FAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCI 89 (145)
Q Consensus 43 v~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~i 89 (145)
+..+++.|+.--.+..-++..|.. =...+| -|-+||.|--+
T Consensus 83 lekildsfisvireqyhdlqaaas----yittvr--dhifkgtsfll 123 (146)
T 3zta_A 83 LEKILDSFISVIREQYHDLQAAAS----YITTVR--DHIFKGTSFLL 123 (146)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHH----HHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHhcchHHHH
Confidence 456666666555555444544432 022333 38899988643
No 56
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=23.21 E-value=30 Score=20.55 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=16.0
Q ss_pred cChhhHHHHHHHHHHhHHHHHHHH
Q 048204 38 NGPFFFAELIPTFCSDAQTTIREM 61 (145)
Q Consensus 38 ~~~~fv~~Li~~fl~ds~~~l~~L 61 (145)
.+++|+..+-+.|+..-.+.+..+
T Consensus 26 nD~~Fl~~IHeAYl~sl~~~~~n~ 49 (51)
T 2wx3_A 26 NDSSFLSTLHEVYLQVLTKNKDNH 49 (51)
T ss_dssp HCHHHHHHHHHHHHHTTC------
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcc
Confidence 578999999999998877766544
No 57
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.80 E-value=1.7e+02 Score=23.07 Aligned_cols=49 Identities=10% Similarity=-0.026 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhhhhcchhHHHHHHHhchhc-cChhhHHHHHHHHHHh
Q 048204 5 VALNRQLLDTITSMEVEGLVDSRFRMVYSLKEA-NGPFFFAELIPTFCSD 53 (145)
Q Consensus 5 ~~~~~q~~~~~~~~~~~g~lD~~~~~L~~L~~~-~~~~fv~~Li~~fl~d 53 (145)
..+++.+..++.-.+..|-+++...-+++|..+ --+.||..+|...++-
T Consensus 8 ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~ 57 (339)
T 1ug3_A 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLER 57 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCC
Confidence 468889999999999999999888899999543 2345666666666664
No 58
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=22.60 E-value=2.1e+02 Score=20.26 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=23.9
Q ss_pred hcchhHHHHHHHhchhccChhhHHHHHH--HHHHhHHHHHHHHHHHh
Q 048204 21 EGLVDSRFRMVYSLKEANGPFFFAELIP--TFCSDAQTTIREMTLAL 65 (145)
Q Consensus 21 ~g~lD~~~~~L~~L~~~~~~~fv~~Li~--~fl~ds~~~l~~L~~al 65 (145)
..++-+++.+|..+....|.+ .+|-. .-+..+.++...+..+.
T Consensus 14 ~d~L~~ql~El~~~~l~~gE~--eeLe~e~~rL~nae~l~~~~~~a~ 58 (175)
T 4abx_A 14 IDLLAFQVQEISEVSPDPGEE--EGLNTELSRLSNLHTIAQAAAGGV 58 (175)
T ss_dssp HHHHHHHHHHHHHHCCCTTHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCChH--HHHHHHHHHHHCHHHHHHHHHHHH
Confidence 345666677888876533332 23322 33566666666666553
No 59
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=22.15 E-value=37 Score=19.76 Aligned_cols=21 Identities=14% Similarity=0.225 Sum_probs=13.6
Q ss_pred cChhhHHHHHHHHHHhHHHHH
Q 048204 38 NGPFFFAELIPTFCSDAQTTI 58 (145)
Q Consensus 38 ~~~~fv~~Li~~fl~ds~~~l 58 (145)
.+++|+..+-+.|+....+++
T Consensus 24 nD~~Fl~~iHeAYl~sl~~~l 44 (46)
T 2wx4_A 24 NDKEFANKLHKAYLNGCSNLL 44 (46)
T ss_dssp HCTTHHHHHHHHHHC------
T ss_pred cCHHHHHHHHHHHHHHHHHHh
Confidence 578999999999998877665
No 60
>3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori}
Probab=22.00 E-value=44 Score=24.36 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhhhhhhcHHHHHHH-HHHHHHHhhhc
Q 048204 72 YHEMEELCMKIKGGTLCIGAHQIALA-CGDLRHAIDDR 108 (145)
Q Consensus 72 ~~~l~~~aH~LKGSSa~iGA~~L~~~-c~~lE~~~~~~ 108 (145)
..++++.+|.+||.-=.|||..+..+ |++|.+.++.-
T Consensus 14 ~~~I~kFs~~IK~ANEfIGALQvldialkKL~k~~k~~ 51 (158)
T 3k1h_A 14 SQQIAKFSRDMKNINESVGALQVLQIACKKLFNKSMGL 51 (158)
T ss_dssp ------CEEECCSHHHHHHHHHHHHHHHHHHHHHTTTG
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35778888999999999999998875 67888887533
No 61
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=21.80 E-value=2.1e+02 Score=23.19 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhhhhhhc-------------HHHHHHHHHHHHHHhh
Q 048204 72 YHEMEELCMKIKGGTLCIG-------------AHQIALACGDLRHAID 106 (145)
Q Consensus 72 ~~~l~~~aH~LKGSSa~iG-------------A~~L~~~c~~lE~~~~ 106 (145)
...+..+++..|..++++| +.-|+.-+.+|-...+
T Consensus 91 a~~i~~La~~vK~gAAsl~~~d~~tQv~lLna~kdVa~al~~Li~atK 138 (332)
T 3dyj_A 91 VATITRLADVVKLGAASLGAEDPETQVVLINAVKDVAKALGDLISATK 138 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888899999999995 3445555555555544
No 62
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=21.36 E-value=89 Score=20.73 Aligned_cols=29 Identities=7% Similarity=0.178 Sum_probs=18.4
Q ss_pred cchhHH-HHHHHhchhccChhhHHHHHHHH
Q 048204 22 GLVDSR-FRMVYSLKEANGPFFFAELIPTF 50 (145)
Q Consensus 22 g~lD~~-~~~L~~L~~~~~~~fv~~Li~~f 50 (145)
.+||+. |.+|+.+..--+-+.|..+++..
T Consensus 2 SvLdqeEFveLrkfKgkvd~~~v~~IL~ei 31 (99)
T 2kjg_A 2 SILEDPEFVKLRQFKGKVNFNLVMQILDEI 31 (99)
T ss_dssp CSCSCHHHHHHHHHTCCSCHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 367877 99999998554544444443333
No 63
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=21.22 E-value=1.4e+02 Score=17.85 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhc
Q 048204 40 PFFFAELIPTFCSDAQTTIREMTLALEQPVVNYHEMEELCMKIKGGTLCIG 90 (145)
Q Consensus 40 ~~fv~~Li~~fl~ds~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSSa~iG 90 (145)
++=+..|...| ...+..++..+... -..+...+|.++.++..|.
T Consensus 36 ~dEi~~l~~~~----n~m~~~l~~~~~~~---~~~~~~~shel~~~l~~i~ 79 (115)
T 3zrx_A 36 ADEIGILAKSI----ERLRRSLKQLADDR---TLLMAGVSHDLRTPLTRIR 79 (115)
T ss_dssp CSHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHH
Confidence 33345555555 33444444444321 2347788999998887764
No 64
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=20.93 E-value=2e+02 Score=19.62 Aligned_cols=18 Identities=6% Similarity=-0.018 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhhcCHH
Q 048204 94 IALACGDLRHAIDDRSKE 111 (145)
Q Consensus 94 L~~~c~~lE~~~~~~~~~ 111 (145)
|..+..+|=.+++.++++
T Consensus 17 il~lS~~ML~aA~~gdWD 34 (123)
T 3nkz_A 17 ILTLSEQMLVLATEGNWD 34 (123)
T ss_dssp HHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHCcHH
Confidence 334444444444444443
No 65
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=20.03 E-value=2.2e+02 Score=19.54 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhhcCHHH
Q 048204 94 IALACGDLRHAIDDRSKER 112 (145)
Q Consensus 94 L~~~c~~lE~~~~~~~~~~ 112 (145)
|..+..+|=.+++.++++.
T Consensus 27 Il~lS~~ML~aA~~gdWD~ 45 (126)
T 3h3m_A 27 IANLTSRMLAAANASNWDL 45 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCcHHH
Confidence 3444444444455555443
Done!