BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>048206
DSFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVI
SVATTNVDDSYE

High Scoring Gene Products

Symbol, full name Information P value
AT3G20230 protein from Arabidopsis thaliana 8.2e-28
AT1G08845 protein from Arabidopsis thaliana 5.1e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  048206
        (72 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2087535 - symbol:AT3G20230 species:3702 "Arabi...   311  8.2e-28   1
TAIR|locus:1005716736 - symbol:AT1G08845 species:3702 "Ar...   118  5.1e-07   1


>TAIR|locus:2087535 [details] [associations]
            symbol:AT3G20230 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
            [GO:0009507 "chloroplast" evidence=ISM] [GO:0006354 "DNA-dependent
            transcription, elongation" evidence=RCA] InterPro:IPR005484
            Pfam:PF00861 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412
            GO:GO:0005840 GO:GO:0003735 EMBL:AP000383 EMBL:AY086535
            EMBL:BT000934 EMBL:AK317176 IPI:IPI00522889 RefSeq:NP_566655.1
            UniGene:At.26916 UniGene:At.38271 ProteinModelPortal:Q9LJX6
            SMR:Q9LJX6 STRING:Q9LJX6 PaxDb:Q9LJX6 PRIDE:Q9LJX6
            EnsemblPlants:AT3G20230.1 GeneID:821567 KEGG:ath:AT3G20230
            TAIR:At3g20230 eggNOG:NOG290803 HOGENOM:HOG000239373
            InParanoid:Q9LJX6 OMA:TDMYMRP PhylomeDB:Q9LJX6
            ProtClustDB:CLSN2688588 ArrayExpress:Q9LJX6 Genevestigator:Q9LJX6
            Uniprot:Q9LJX6
        Length = 187

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 58/69 (84%), Positives = 62/69 (89%)

Query:     1 DSFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVI 60
             DSF+QAAWTRRSRGE  KRPNRKSWKQRT+MYMRPFL NVFFS+KF+HAKVMHR  SKVI
Sbjct:    56 DSFVQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVI 115

Query:    61 SVATTNVDD 69
             SVATTN  D
Sbjct:   116 SVATTNARD 124


>TAIR|locus:1005716736 [details] [associations]
            symbol:AT1G08845 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA]
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] InterPro:IPR005484
            Pfam:PF00861 EMBL:CP002684 GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 IPI:IPI00938904 RefSeq:NP_001154322.1
            UniGene:At.47036 ProteinModelPortal:F4HXR7 SMR:F4HXR7 PRIDE:F4HXR7
            EnsemblPlants:AT1G08845.2 GeneID:837407 KEGG:ath:AT1G08845
            OMA:SFFGVED Uniprot:F4HXR7
        Length = 234

 Score = 118 (46.6 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 25/53 (47%), Positives = 34/53 (64%)

Query:    18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
             K P++  S+KQRT  YM PF  +VF SK+FV A + HR   + ++VA TN  D
Sbjct:   116 KNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKD 168


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.131   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       72        72   0.00091  102 3  11 22  0.41    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  105 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.82u 0.10s 7.92t   Elapsed:  00:00:01
  Total cpu time:  7.82u 0.10s 7.92t   Elapsed:  00:00:01
  Start:  Mon May 20 21:43:59 2013   End:  Mon May 20 21:44:00 2013

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