BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048206
(72 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255585804|ref|XP_002533581.1| structural constituent of ribosome, putative [Ricinus communis]
gi|223526540|gb|EEF28799.1| structural constituent of ribosome, putative [Ricinus communis]
Length = 186
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 63/69 (91%)
Query: 1 DSFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVI 60
+SFIQAAWTRRSRGEL KRPNRKSWKQRT+MYMRPFL NVFFSK+F+HAKVMHR SKVI
Sbjct: 64 NSFIQAAWTRRSRGELAKRPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSKVI 123
Query: 61 SVATTNVDD 69
SVATTN D
Sbjct: 124 SVATTNAKD 132
>gi|297834952|ref|XP_002885358.1| 50S ribosomal protein L18 family [Arabidopsis lyrata subsp. lyrata]
gi|297331198|gb|EFH61617.1| 50S ribosomal protein L18 family [Arabidopsis lyrata subsp. lyrata]
Length = 187
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 62/69 (89%)
Query: 1 DSFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVI 60
DSF+QAAWTRRSRGE KRPNRKSWKQRT+MYMRPFL NVFFS+KF+HAKVMHR SKVI
Sbjct: 56 DSFVQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVI 115
Query: 61 SVATTNVDD 69
SVATTN D
Sbjct: 116 SVATTNARD 124
>gi|18402538|ref|NP_566655.1| Ribosomal L18p/L5e family protein [Arabidopsis thaliana]
gi|9293979|dbj|BAB01882.1| unnamed protein product [Arabidopsis thaliana]
gi|21554527|gb|AAM63600.1| unknown [Arabidopsis thaliana]
gi|24030337|gb|AAN41334.1| unknown protein [Arabidopsis thaliana]
gi|222423792|dbj|BAH19862.1| AT3G20230 [Arabidopsis thaliana]
gi|332642829|gb|AEE76350.1| Ribosomal L18p/L5e family protein [Arabidopsis thaliana]
Length = 187
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 62/69 (89%)
Query: 1 DSFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVI 60
DSF+QAAWTRRSRGE KRPNRKSWKQRT+MYMRPFL NVFFS+KF+HAKVMHR SKVI
Sbjct: 56 DSFVQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVI 115
Query: 61 SVATTNVDD 69
SVATTN D
Sbjct: 116 SVATTNARD 124
>gi|388509934|gb|AFK43033.1| unknown [Lotus japonicus]
Length = 202
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/68 (82%), Positives = 61/68 (89%)
Query: 2 SFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVIS 61
SF++AAWTRRSRGE KRPNRKSWKQRT+MYMRPFL NVFFSK+F+HAKVMHR SKVIS
Sbjct: 73 SFVRAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSKVIS 132
Query: 62 VATTNVDD 69
VATTN D
Sbjct: 133 VATTNSKD 140
>gi|358249214|ref|NP_001240012.1| uncharacterized protein LOC100820550 [Glycine max]
gi|255640812|gb|ACU20689.1| unknown [Glycine max]
Length = 197
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 61/69 (88%)
Query: 1 DSFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVI 60
DSFI+AAWTRRSRGE K+PNRKSWKQRT+MYMRPFL NVFFSK+F+HAKV+HR SKVI
Sbjct: 67 DSFIRAAWTRRSRGEAAKKPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVVHRGTSKVI 126
Query: 61 SVATTNVDD 69
VATTN D
Sbjct: 127 CVATTNAKD 135
>gi|356526443|ref|XP_003531827.1| PREDICTED: 50S ribosomal protein L18-like [Glycine max]
Length = 197
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 61/69 (88%)
Query: 1 DSFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVI 60
DSFI+AAWTRRSRGE K+PNRKSWKQRT+MYMRPFL NVFFSK+F+HAKV+HR SKVI
Sbjct: 67 DSFIRAAWTRRSRGEAAKKPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVVHRGTSKVI 126
Query: 61 SVATTNVDD 69
VATTN D
Sbjct: 127 CVATTNAKD 135
>gi|357137082|ref|XP_003570130.1| PREDICTED: 50S ribosomal protein L18-like [Brachypodium distachyon]
Length = 185
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/66 (81%), Positives = 60/66 (90%)
Query: 4 IQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
++AAWTRRSRGEL+K PNRKSWKQRT+MYMRPFL NVFFSK+FVHAKVMHR SKVI+VA
Sbjct: 58 VRAAWTRRSRGELEKNPNRKSWKQRTDMYMRPFLLNVFFSKRFVHAKVMHRGTSKVIAVA 117
Query: 64 TTNVDD 69
TTN D
Sbjct: 118 TTNAKD 123
>gi|449465411|ref|XP_004150421.1| PREDICTED: 50S ribosomal protein L18-like [Cucumis sativus]
Length = 190
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 59/67 (88%)
Query: 3 FIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISV 62
FIQ+AWTRRSR E KRPN+KSWKQRT+MYMRPFL NVFFSKKF+HAKVMHR SKVISV
Sbjct: 61 FIQSAWTRRSREEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISV 120
Query: 63 ATTNVDD 69
ATTN D
Sbjct: 121 ATTNAKD 127
>gi|224135983|ref|XP_002327352.1| predicted protein [Populus trichocarpa]
gi|222835722|gb|EEE74157.1| predicted protein [Populus trichocarpa]
Length = 128
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 59/66 (89%)
Query: 4 IQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
IQAAWTRRSRGEL+K+PN+KSWKQRT MYM+PFL NVFFS+KF+ AKVMHR SKVISVA
Sbjct: 1 IQAAWTRRSRGELEKKPNKKSWKQRTEMYMKPFLLNVFFSRKFIQAKVMHRGTSKVISVA 60
Query: 64 TTNVDD 69
TTN D
Sbjct: 61 TTNAKD 66
>gi|226502296|ref|NP_001150881.1| structural constituent of ribosome [Zea mays]
gi|195642592|gb|ACG40764.1| structural constituent of ribosome [Zea mays]
gi|413938308|gb|AFW72859.1| structural constituent of ribosome [Zea mays]
Length = 189
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 59/66 (89%)
Query: 4 IQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
+ AAWTRRSRGE ++RPNRKSWKQRT+MYMRPFL NVFFSK+FVHAKVMHR SKVI+VA
Sbjct: 62 VCAAWTRRSRGEAEQRPNRKSWKQRTDMYMRPFLLNVFFSKRFVHAKVMHRGTSKVIAVA 121
Query: 64 TTNVDD 69
TTN D
Sbjct: 122 TTNSKD 127
>gi|224145139|ref|XP_002325540.1| predicted protein [Populus trichocarpa]
gi|222862415|gb|EEE99921.1| predicted protein [Populus trichocarpa]
Length = 128
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 59/66 (89%)
Query: 4 IQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
IQAAWTRRSRGEL K+PN+KSWKQRT+MYMRPFL NVFFS++F+ AKVMHR SKV+SVA
Sbjct: 1 IQAAWTRRSRGELAKKPNKKSWKQRTDMYMRPFLLNVFFSRRFIQAKVMHRGTSKVVSVA 60
Query: 64 TTNVDD 69
TTN D
Sbjct: 61 TTNAKD 66
>gi|449531806|ref|XP_004172876.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L18-like
[Cucumis sativus]
Length = 190
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 57/67 (85%)
Query: 3 FIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISV 62
IQ+AWTRRSR E KRPN+KSWKQRT+MYMRPF NVFFSKKF+HAKVMHR SKVISV
Sbjct: 61 LIQSAWTRRSREEAAKRPNKKSWKQRTDMYMRPFXLNVFFSKKFIHAKVMHRGTSKVISV 120
Query: 63 ATTNVDD 69
ATTN D
Sbjct: 121 ATTNAKD 127
>gi|357470487|ref|XP_003605528.1| 50S ribosomal protein L18 [Medicago truncatula]
gi|355506583|gb|AES87725.1| 50S ribosomal protein L18 [Medicago truncatula]
Length = 199
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 60/68 (88%)
Query: 2 SFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVIS 61
+FI+AAWTRRSRGE +K+P+RKSWK+RT+MYMRPFL ++FFSKKFVHAKV HR SKVI
Sbjct: 70 TFIRAAWTRRSRGEAEKKPSRKSWKRRTDMYMRPFLLDIFFSKKFVHAKVTHRGTSKVIC 129
Query: 62 VATTNVDD 69
VATTN D
Sbjct: 130 VATTNAKD 137
>gi|225454046|ref|XP_002263231.1| PREDICTED: 50S ribosomal protein L18 [Vitis vinifera]
Length = 183
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 58/66 (87%)
Query: 4 IQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
+QAAWTRRSR E KRP+RKSWKQ+T+MYMRPFL NVFFSK+F+HAKVMHR SKVISVA
Sbjct: 56 VQAAWTRRSRSEAAKRPSRKSWKQKTDMYMRPFLLNVFFSKRFIHAKVMHRPTSKVISVA 115
Query: 64 TTNVDD 69
TTN D
Sbjct: 116 TTNSKD 121
>gi|297744840|emb|CBI38108.3| unnamed protein product [Vitis vinifera]
Length = 197
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 58/66 (87%)
Query: 4 IQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
+QAAWTRRSR E KRP+RKSWKQ+T+MYMRPFL NVFFSK+F+HAKVMHR SKVISVA
Sbjct: 70 VQAAWTRRSRSEAAKRPSRKSWKQKTDMYMRPFLLNVFFSKRFIHAKVMHRPTSKVISVA 129
Query: 64 TTNVDD 69
TTN D
Sbjct: 130 TTNSKD 135
>gi|41052808|dbj|BAD07676.1| unknown protein [Oryza sativa Japonica Group]
gi|125540732|gb|EAY87127.1| hypothetical protein OsI_08528 [Oryza sativa Indica Group]
gi|125583307|gb|EAZ24238.1| hypothetical protein OsJ_07988 [Oryza sativa Japonica Group]
gi|215704232|dbj|BAG93072.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 181
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 59/66 (89%)
Query: 4 IQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
++AAWTRRSR E ++RPNRKSWKQRT+MYMRPFL NVFFSK+FVHAKV+HR SKVISVA
Sbjct: 54 VRAAWTRRSRKEAEERPNRKSWKQRTDMYMRPFLLNVFFSKRFVHAKVVHRGTSKVISVA 113
Query: 64 TTNVDD 69
+TN D
Sbjct: 114 STNAKD 119
>gi|449433155|ref|XP_004134363.1| PREDICTED: 50S ribosomal protein L18-like [Cucumis sativus]
Length = 221
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 6 AAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATT 65
AAWTRRSRGE KR N+KSWKQRT+MYMRPF+ +V+FS++F+HAKVMHR SKV+S A+T
Sbjct: 96 AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 155
Query: 66 NVDD 69
N D
Sbjct: 156 NCKD 159
>gi|449515551|ref|XP_004164812.1| PREDICTED: 50S ribosomal protein L18-like [Cucumis sativus]
Length = 150
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 6 AAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATT 65
AAWTRRSRGE KR N+KSWKQRT+MYMRPF+ +V+FS++F+HAKVMHR SKV+S A+T
Sbjct: 25 AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 84
Query: 66 NVDD 69
N D
Sbjct: 85 NCKD 88
>gi|168036088|ref|XP_001770540.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678248|gb|EDQ64709.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 196
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 51/67 (76%), Gaps = 2/67 (2%)
Query: 3 FIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISV 62
++AAWTRRS+G+ K N+KSWKQRT Y +PF+ +VF S K+VHAKVMHR S V+SV
Sbjct: 70 IVEAAWTRRSKGQPGK--NKKSWKQRTEKYFKPFILDVFISSKYVHAKVMHRVTSSVVSV 127
Query: 63 ATTNVDD 69
ATTN D
Sbjct: 128 ATTNAKD 134
>gi|413923510|gb|AFW63442.1| hypothetical protein ZEAMMB73_021028 [Zea mays]
Length = 177
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 2 SFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVIS 61
+ + AAWTRRSRGE ++RPNRKSWKQ +F F SK+FVHAKVMHR SKVI+
Sbjct: 61 TVVCAAWTRRSRGETEQRPNRKSWKQTCTCAPSCSIF--FPSKRFVHAKVMHRGTSKVIA 118
Query: 62 VATTN 66
VATTN
Sbjct: 119 VATTN 123
>gi|302822798|ref|XP_002993055.1| hypothetical protein SELMODRAFT_136453 [Selaginella
moellendorffii]
gi|300139147|gb|EFJ05894.1| hypothetical protein SELMODRAFT_136453 [Selaginella
moellendorffii]
Length = 132
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 3 FIQAA-WTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVIS 61
IQA WT +S GE K NRKSWK+ T YMRPF +V+ S ++V+AK++HR SK ++
Sbjct: 5 IIQAGGWTGKSSGEPGK--NRKSWKRATEKYMRPFSIDVYISSRYVNAKIVHRVTSKTVA 62
Query: 62 VATTNVDD 69
VATTN D
Sbjct: 63 VATTNAKD 70
>gi|302780293|ref|XP_002971921.1| hypothetical protein SELMODRAFT_96295 [Selaginella
moellendorffii]
gi|300160220|gb|EFJ26838.1| hypothetical protein SELMODRAFT_96295 [Selaginella
moellendorffii]
Length = 132
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 3 FIQAA-WTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVIS 61
IQA WT +S GE K NRKSWK+ T YMRPF +V+ S ++V+AK++HR SK ++
Sbjct: 5 IIQAGGWTGKSSGEPGK--NRKSWKRATEKYMRPFSIDVYISARYVNAKIVHRVTSKTVA 62
Query: 62 VATTNVDD 69
VATTN D
Sbjct: 63 VATTNAKD 70
>gi|413938307|gb|AFW72858.1| hypothetical protein ZEAMMB73_879546 [Zea mays]
Length = 101
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 34/39 (87%)
Query: 31 MYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
MYMRPFL NVFFSK+FVHAKVMHR SKVI+VATTN D
Sbjct: 1 MYMRPFLLNVFFSKRFVHAKVMHRGTSKVIAVATTNSKD 39
>gi|224125410|ref|XP_002319579.1| predicted protein [Populus trichocarpa]
gi|222857955|gb|EEE95502.1| predicted protein [Populus trichocarpa]
Length = 187
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 13 RGELDKRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
+G+ K PN+ S+KQRT YM PF +VF SK+FV A + HR SK ++VA TN D
Sbjct: 64 KGKKSKNPNKHLSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKD 121
>gi|356508210|ref|XP_003522852.1| PREDICTED: uncharacterized protein LOC100804348 [Glycine max]
Length = 187
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 13 RGELDKRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
+G+ K PN+ S+KQRT YM PF +VF SK+FV A + HR SK ++VA TN D
Sbjct: 64 KGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKD 121
>gi|255588441|ref|XP_002534606.1| structural constituent of ribosome, putative [Ricinus communis]
gi|223524931|gb|EEF27777.1| structural constituent of ribosome, putative [Ricinus communis]
Length = 188
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 18 KRPNRK--SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K PN K S+KQRT YM PF +VF SK+FV A + HR SK ++VA TN D
Sbjct: 69 KNPNNKHMSFKQRTKAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKD 122
>gi|388494676|gb|AFK35404.1| unknown [Lotus japonicus]
Length = 148
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 13 RGELDKRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
+G+ K PN+ S+KQRT +M PF +VF SK+FV A V HR SK ++VA TN D
Sbjct: 25 KGKKSKNPNKHVSFKQRTVAFMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKD 82
>gi|356517682|ref|XP_003527515.1| PREDICTED: uncharacterized protein LOC100805468 [Glycine max]
Length = 202
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 13 RGELDKRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
+G+ K PN+ S+KQRT YM PF +VF SK+FV A + HR SK ++VA TN D
Sbjct: 79 KGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKD 136
>gi|359487879|ref|XP_002266607.2| PREDICTED: uncharacterized protein LOC100250278 [Vitis vinifera]
gi|298204993|emb|CBI34300.3| unnamed protein product [Vitis vinifera]
Length = 187
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K PN+ S+KQRT YM PF +V SK+FV A + HR SK ++VA TN D
Sbjct: 69 KNPNKHISFKQRTGAYMEPFTLDVLISKRFVSASLTHRVTSKQVAVAGTNSKD 121
>gi|116791242|gb|ABK25907.1| unknown [Picea sitchensis]
Length = 186
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K P++ S+KQRT YM+PF +VF SK+FV A + HR SK ++VA TN D
Sbjct: 68 KNPHKHVSFKQRTIAYMQPFTLDVFISKRFVSASITHRVTSKQVAVAGTNSKD 120
>gi|302760693|ref|XP_002963769.1| hypothetical protein SELMODRAFT_68956 [Selaginella
moellendorffii]
gi|300169037|gb|EFJ35640.1| hypothetical protein SELMODRAFT_68956 [Selaginella
moellendorffii]
Length = 107
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 24 SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
S++QR++ YMRPF +V S K+V+A +MHRS +V++ +TN D
Sbjct: 1 SFRQRSDKYMRPFCLDVHLSSKYVNATIMHRSRGRVVAAVSTNSKD 46
>gi|302786168|ref|XP_002974855.1| hypothetical protein SELMODRAFT_59025 [Selaginella
moellendorffii]
gi|300157750|gb|EFJ24375.1| hypothetical protein SELMODRAFT_59025 [Selaginella
moellendorffii]
Length = 107
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 24 SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
S++QR++ YMRPF +V S K+V+A +MHRS +V++ +TN D
Sbjct: 1 SFRQRSDKYMRPFCLDVHLSSKYVNATIMHRSRGRVVAAVSTNSKD 46
>gi|242040201|ref|XP_002467495.1| hypothetical protein SORBIDRAFT_01g029100 [Sorghum bicolor]
gi|241921349|gb|EER94493.1| hypothetical protein SORBIDRAFT_01g029100 [Sorghum bicolor]
Length = 187
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K P++ S+KQRT YM PF +VF SK+FV A + HRS + ++VA TN D
Sbjct: 69 KNPHKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRSTCRQVAVAGTNSKD 121
>gi|115483410|ref|NP_001065375.1| Os10g0559900 [Oryza sativa Japonica Group]
gi|18873848|gb|AAL79794.1|AC079874_17 hypothetical protein [Oryza sativa Japonica Group]
gi|31433497|gb|AAP55002.1| expressed protein [Oryza sativa Japonica Group]
gi|113639907|dbj|BAF27212.1| Os10g0559900 [Oryza sativa Japonica Group]
gi|125532939|gb|EAY79504.1| hypothetical protein OsI_34632 [Oryza sativa Indica Group]
gi|125575679|gb|EAZ16963.1| hypothetical protein OsJ_32448 [Oryza sativa Japonica Group]
gi|215687201|dbj|BAG91766.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 187
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K P++ S+KQRT YM PF +VF SK+FV A + HR+ + ++VA TN D
Sbjct: 69 KNPHKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRTTCRQVAVAGTNSKD 121
>gi|449442869|ref|XP_004139203.1| PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus]
gi|449525565|ref|XP_004169787.1| PREDICTED: uncharacterized LOC101215592 [Cucumis sativus]
Length = 187
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 24 SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
S+KQRT YM PF +VF SK+FV A + HR K ++VA TN D
Sbjct: 76 SFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKD 121
>gi|238478415|ref|NP_001154322.1| Ribosomal L.8/L5e family protein [Arabidopsis thaliana]
gi|332190238|gb|AEE28359.1| Ribosomal L.8/L5e family protein [Arabidopsis thaliana]
Length = 234
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K P++ S+KQRT YM PF +VF SK+FV A + HR + ++VA TN D
Sbjct: 116 KNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKD 168
>gi|297843672|ref|XP_002889717.1| structural constituent of ribosome [Arabidopsis lyrata subsp.
lyrata]
gi|297335559|gb|EFH65976.1| structural constituent of ribosome [Arabidopsis lyrata subsp.
lyrata]
Length = 189
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K P++ S+KQRT YM PF +VF SK+FV A + HR + ++VA TN D
Sbjct: 71 KNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKD 123
>gi|326489354|dbj|BAK01660.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326501304|dbj|BAJ98883.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518152|dbj|BAK07328.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 187
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K P++ S+KQRT +M PF +VF SK+FV A + HRS + ++VA TN D
Sbjct: 69 KNPHKHISFKQRTIAHMEPFTLDVFISKRFVSASLTHRSTCRQVAVAGTNSKD 121
>gi|30680844|ref|NP_849617.1| Ribosomal L.8/L5e family protein [Arabidopsis thaliana]
gi|26453256|dbj|BAC43701.1| unknown protein [Arabidopsis thaliana]
gi|28372952|gb|AAO39958.1| At1g08850 [Arabidopsis thaliana]
gi|332190237|gb|AEE28358.1| Ribosomal L.8/L5e family protein [Arabidopsis thaliana]
Length = 189
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K P++ S+KQRT YM PF +VF SK+FV A + HR + ++VA TN D
Sbjct: 71 KNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKD 123
>gi|357147393|ref|XP_003574328.1| PREDICTED: uncharacterized protein LOC100845820 [Brachypodium
distachyon]
Length = 187
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K P++ S+KQRT +M PF +VF SK+FV A + HRS + ++VA TN D
Sbjct: 69 KNPHKHISFKQRTIAHMEPFTLDVFISKRFVSASLTHRSTCRQVAVAGTNSKD 121
>gi|168054579|ref|XP_001779708.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668906|gb|EDQ55504.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 118
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 28 RTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
RT +RPF +VF S K++HA VMHR SKV++V +TN +
Sbjct: 16 RTEKCLRPFSLDVFLSGKYIHASVMHRVTSKVVAVCSTNAKE 57
>gi|226494019|ref|NP_001143121.1| uncharacterized protein LOC100275599 [Zea mays]
gi|194703688|gb|ACF85928.1| unknown [Zea mays]
gi|195614668|gb|ACG29164.1| hypothetical protein [Zea mays]
gi|195616076|gb|ACG29868.1| hypothetical protein [Zea mays]
gi|195646646|gb|ACG42791.1| hypothetical protein [Zea mays]
gi|414867690|tpg|DAA46247.1| TPA: hypothetical protein ZEAMMB73_679563 [Zea mays]
gi|414867691|tpg|DAA46248.1| TPA: hypothetical protein ZEAMMB73_679563 [Zea mays]
Length = 187
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K P++ S+KQRT +M PF +VF SK+FV A + HRS + ++VA TN D
Sbjct: 69 KNPHKHISFKQRTIAHMEPFTLDVFISKRFVSASLTHRSTCRQVAVAGTNSKD 121
>gi|223947491|gb|ACN27829.1| unknown [Zea mays]
Length = 173
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 18 KRPNRK-SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
K P++ S+KQRT +M PF +VF SK+FV A + HRS + ++VA TN D
Sbjct: 55 KNPHKHISFKQRTIAHMEPFTLDVFISKRFVSASLTHRSTCRQVAVAGTNSKD 107
>gi|449447649|ref|XP_004141580.1| PREDICTED: uncharacterized protein LOC101213193 [Cucumis sativus]
gi|449481530|ref|XP_004156210.1| PREDICTED: uncharacterized LOC101213193 [Cucumis sativus]
Length = 334
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 9 TRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
R +++K+ ++ Q T+ Y PF ++F SK V A ++HR SKV++VA
Sbjct: 194 VERENDDVEKKLRTPTFNQLTSPYHEPFCLDIFISKASVRACIIHRVTSKVVAVA 248
>gi|356540329|ref|XP_003538642.1| PREDICTED: uncharacterized protein LOC100802391 [Glycine max]
Length = 329
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 16 LDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
++KR ++ Q T Y PF ++F SK V A V+HR SKV++VA
Sbjct: 200 VNKRQRTPTFNQLTGPYHEPFCLDIFISKASVRACVVHRVTSKVVAVA 247
>gi|148907754|gb|ABR17003.1| unknown [Picea sitchensis]
Length = 583
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 8 WTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNV 67
W R L+++ S+K+ T+ YM PF ++F SK V A ++HR V++VA +
Sbjct: 208 WLREEEA-LERKKKLLSFKEMTDAYMHPFCLDIFVSKSSVCACIVHRVTCNVVAVAQSIS 266
Query: 68 DD 69
D
Sbjct: 267 KD 268
>gi|255642189|gb|ACU21359.1| unknown [Glycine max]
Length = 103
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 33 MRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
M PF +VF SK+FV A + HR SK ++VA TN D
Sbjct: 1 MEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKD 37
>gi|224111280|ref|XP_002332948.1| predicted protein [Populus trichocarpa]
gi|222834260|gb|EEE72737.1| predicted protein [Populus trichocarpa]
Length = 111
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 24 SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
++ Q T Y PF +++ SK V A V+HR SKV++VA
Sbjct: 1 TFNQLTGPYHEPFCLDIYISKASVRACVIHRETSKVVAVA 40
>gi|224099809|ref|XP_002311628.1| predicted protein [Populus trichocarpa]
gi|222851448|gb|EEE88995.1| predicted protein [Populus trichocarpa]
Length = 356
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 12 SRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
S G K+ ++ Q T Y PF +++ SK V A V+HR SKV++VA
Sbjct: 210 SGGAEKKKIRTPTFNQLTGPYHEPFCLDIYISKASVRACVIHRVTSKVVAVA 261
>gi|255552181|ref|XP_002517135.1| structural constituent of ribosome, putative [Ricinus communis]
gi|223543770|gb|EEF45298.1| structural constituent of ribosome, putative [Ricinus communis]
Length = 140
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 24 SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
++ Q T Y PF +++ SK V A V+HR SKV++VA
Sbjct: 16 TFNQLTGPYHEPFCLDIYISKASVRACVIHRVTSKVVAVA 55
>gi|225432670|ref|XP_002278526.1| PREDICTED: uncharacterized protein LOC100249372 [Vitis vinifera]
gi|297737055|emb|CBI26256.3| unnamed protein product [Vitis vinifera]
Length = 348
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 16 LDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
++K+ ++ Q T Y PF ++F SK V A ++HR SKV++VA
Sbjct: 211 VEKKLRTPTFNQLTAPYHEPFCLDIFISKGSVRACIIHRVTSKVVAVA 258
>gi|302785772|ref|XP_002974657.1| hypothetical protein SELMODRAFT_101829 [Selaginella
moellendorffii]
gi|300157552|gb|EFJ24177.1| hypothetical protein SELMODRAFT_101829 [Selaginella
moellendorffii]
Length = 127
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 24 SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
S+++ ++ YMRP+ + F K+ +HAK++HR+ ++ TN D
Sbjct: 2 SFRRESDKYMRPYFLIIDFPKRSIHAKIVHRAQHTTVASVGTNSRD 47
>gi|357480871|ref|XP_003610721.1| 50S ribosomal protein L18 [Medicago truncatula]
gi|355512056|gb|AES93679.1| 50S ribosomal protein L18 [Medicago truncatula]
Length = 404
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 16 LDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
++K+ ++ Q T Y PF +++ SK V A ++HR SKV+ VA
Sbjct: 224 VNKKQRVPTFNQLTGPYHEPFCLDIYISKASVRACIVHRVTSKVVVVA 271
>gi|297830972|ref|XP_002883368.1| structural constituent of ribosome [Arabidopsis lyrata subsp.
lyrata]
gi|297329208|gb|EFH59627.1| structural constituent of ribosome [Arabidopsis lyrata subsp.
lyrata]
Length = 311
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1 DSFIQAAWTRRSRGELDKRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVI 60
DSF T + KR ++ Q T + PF +++ SK+ V A V+HR SKV+
Sbjct: 165 DSF--TGETDHPNAAVRKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVV 222
Query: 61 SVA 63
+VA
Sbjct: 223 TVA 225
>gi|15229493|ref|NP_188884.1| 50S ribosomal protein L18-like protein [Arabidopsis thaliana]
gi|11994277|dbj|BAB01460.1| unnamed protein product [Arabidopsis thaliana]
gi|60547769|gb|AAX23848.1| hypothetical protein At3g22450 [Arabidopsis thaliana]
gi|71905479|gb|AAZ52717.1| expressed protein [Arabidopsis thaliana]
gi|71905481|gb|AAZ52718.1| expressed protein [Arabidopsis thaliana]
gi|332643120|gb|AEE76641.1| 50S ribosomal protein L18-like protein [Arabidopsis thaliana]
Length = 311
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 18 KRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
KR ++ Q T + PF +++ SK+ V A V+HR SKV++VA
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVA 225
>gi|302759893|ref|XP_002963369.1| hypothetical protein SELMODRAFT_80094 [Selaginella
moellendorffii]
gi|300168637|gb|EFJ35240.1| hypothetical protein SELMODRAFT_80094 [Selaginella
moellendorffii]
Length = 129
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 24 SWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDD 69
S+++ ++ YMRP+ + F K+ +HAK++H + ++ TN D
Sbjct: 2 SFRRESDKYMRPYFLIIDFPKRSIHAKIVHSAQHTTVASVGTNSRD 47
>gi|326527543|dbj|BAK08046.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 327
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 18 KRPNRKSWKQRTNMYMRPFLFNVFFSKKFVHAKVMHRSISKVISVA 63
KR ++ Q T+ Y PF ++ SK V A +HR S+V+SVA
Sbjct: 188 KRDRVPTFNQMTDPYHHPFCLDIHVSKGSVRACFVHRVTSRVVSVA 233
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 997,995,570
Number of Sequences: 23463169
Number of extensions: 26936436
Number of successful extensions: 68186
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68127
Number of HSP's gapped (non-prelim): 57
length of query: 72
length of database: 8,064,228,071
effective HSP length: 44
effective length of query: 28
effective length of database: 7,031,848,635
effective search space: 196891761780
effective search space used: 196891761780
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)