BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048206
         (72 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q68VM9|HEMH_RICTY Ferrochelatase OS=Rickettsia typhi (strain ATCC VR-144 /
          Wilmington) GN=hemH PE=3 SV=2
          Length = 342

 Score = 29.3 bits (64), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 32 YMRPFLFNVFFSKKFVH-AKVMHRSISKVISV 62
          Y++PFLFN+F+ K  ++    +   I+K+IS+
Sbjct: 20 YVKPFLFNLFYDKAIINLPNPLRYVIAKIISI 51


>sp|Q9ZC84|HEMH_RICPR Ferrochelatase OS=Rickettsia prowazekii (strain Madrid E) GN=hemH
          PE=3 SV=2
          Length = 342

 Score = 28.9 bits (63), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 32 YMRPFLFNVFFSKKFVH-AKVMHRSISKVISV 62
          Y++PFLFN+F+ K  ++    +   I+K+IS+
Sbjct: 20 YVKPFLFNLFYDKAIINLPNPLRYIIAKIISI 51


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.131    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,042,820
Number of Sequences: 539616
Number of extensions: 624225
Number of successful extensions: 1442
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1441
Number of HSP's gapped (non-prelim): 3
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)