Query 048206
Match_columns 72
No_of_seqs 34 out of 36
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 12:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ovy_A 50S ribosomal protein L 98.5 6.2E-08 2.1E-12 64.9 3.9 39 32-71 26-64 (120)
2 3v2d_S 50S ribosomal protein L 98.4 3.6E-07 1.2E-11 60.8 5.1 37 35-71 23-59 (112)
3 3r8s_O 50S ribosomal protein L 98.4 1.6E-07 5.6E-12 62.3 2.9 39 33-71 20-58 (116)
4 3bbo_Q Ribosomal protein L18; 98.4 1.8E-07 6.2E-12 65.8 2.9 38 33-71 64-101 (161)
5 1vq8_N 50S ribosomal protein L 98.0 7.4E-06 2.5E-10 58.5 4.6 36 34-69 31-68 (187)
6 3j21_O 50S ribosomal protein L 97.8 2.9E-05 9.9E-10 56.1 5.0 36 36-71 33-70 (203)
7 2zjr_L 50S ribosomal protein L 97.7 7.1E-06 2.4E-10 54.6 0.3 35 33-67 24-58 (114)
8 3u5e_D 60S ribosomal protein L 96.1 0.0086 2.9E-07 45.6 5.1 35 36-70 49-85 (297)
9 2zkr_n 60S ribosomal protein L 96.0 0.012 4.1E-07 44.9 5.6 34 36-69 49-84 (297)
10 4a17_M RPL5, 60S ribosomal pro 95.8 0.0078 2.7E-07 46.0 4.0 34 36-69 49-84 (301)
11 3iz5_Q 60S ribosomal protein L 90.3 0.2 6.7E-06 38.4 3.1 28 43-70 57-86 (304)
12 3eud_A Protein SHQ1; CS domain 24.1 38 0.0013 22.4 1.8 18 31-48 56-73 (115)
13 1wgr_A Growth factor receptor- 24.0 9.3 0.00032 24.4 -1.2 23 4-33 75-97 (100)
No 1
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=98.53 E-value=6.2e-08 Score=64.90 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=35.7
Q ss_pred cccceeEEEeeeccceEEEEEeeccceEEEEEeccccccC
Q 048206 32 YMRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDDSY 71 (72)
Q Consensus 32 ymrPf~L~vffSkk~V~A~ViHr~Ts~VvavAsT~sKdlr 71 (72)
..+| -|.||+||++|+|||||...++|+++|||.+++++
T Consensus 26 ~~rp-RL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~ 64 (120)
T 1ovy_A 26 TERP-RLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG 64 (120)
T ss_dssp SSCC-SEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC
T ss_pred CCCC-EEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC
Confidence 4455 79999999999999999999999999999999975
No 2
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=98.41 E-value=3.6e-07 Score=60.79 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=34.2
Q ss_pred ceeEEEeeeccceEEEEEeeccceEEEEEeccccccC
Q 048206 35 PFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDDSY 71 (72)
Q Consensus 35 Pf~L~vffSkk~V~A~ViHr~Ts~VvavAsT~sKdlr 71 (72)
-+-|.||.||++|+|||||-..++|+++|||.+++++
T Consensus 23 rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k 59 (112)
T 3v2d_S 23 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK 59 (112)
T ss_dssp CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC
T ss_pred CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc
Confidence 4578999999999999999999999999999999874
No 3
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=98.38 E-value=1.6e-07 Score=62.25 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=36.0
Q ss_pred ccceeEEEeeeccceEEEEEeeccceEEEEEeccccccC
Q 048206 33 MRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDDSY 71 (72)
Q Consensus 33 mrPf~L~vffSkk~V~A~ViHr~Ts~VvavAsT~sKdlr 71 (72)
...+-|.||.||++|+|||||-.+++|+++|||.+++++
T Consensus 20 ~~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~ 58 (116)
T 3r8s_O 20 LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIA 58 (116)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHH
T ss_pred CCCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhc
Confidence 466789999999999999999999999999999999874
No 4
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.36 E-value=1.8e-07 Score=65.83 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=35.2
Q ss_pred ccceeEEEeeeccceEEEEEeeccceEEEEEeccccccC
Q 048206 33 MRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNVDDSY 71 (72)
Q Consensus 33 mrPf~L~vffSkk~V~A~ViHr~Ts~VvavAsT~sKdlr 71 (72)
-+| -|.||.||++|+|||||..+++++++|||.+|||+
T Consensus 64 ~rP-RL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk 101 (161)
T 3bbo_Q 64 ERP-RLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSIS 101 (161)
T ss_dssp SCC-CCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHH
T ss_pred CCC-EEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHH
Confidence 355 69999999999999999999999999999999986
No 5
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=97.97 E-value=7.4e-06 Score=58.53 Aligned_cols=36 Identities=14% Similarity=-0.011 Sum_probs=33.7
Q ss_pred cceeEEEeeeccceEEEEE--eeccceEEEEEeccccc
Q 048206 34 RPFLFNVFFSKKFVHAKVM--HRSISKVISVATTNVDD 69 (72)
Q Consensus 34 rPf~L~vffSkk~V~A~Vi--Hr~Ts~VvavAsT~sKd 69 (72)
.-+-|.||+||+.|.|||| +-..++|+|+|||.+++
T Consensus 31 ~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~ 68 (187)
T 1vq8_N 31 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA 68 (187)
T ss_dssp CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG
T ss_pred CCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh
Confidence 3477999999999999999 99999999999999987
No 6
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.78 E-value=2.9e-05 Score=56.13 Aligned_cols=36 Identities=14% Similarity=-0.129 Sum_probs=31.9
Q ss_pred eeEEEeeeccceEEEEEe--eccceEEEEEeccccccC
Q 048206 36 FLFNVFFSKKFVHAKVMH--RSISKVISVATTNVDDSY 71 (72)
Q Consensus 36 f~L~vffSkk~V~A~ViH--r~Ts~VvavAsT~sKdlr 71 (72)
+-|.||+||+.|.||||+ ...++|+|+|||.+++++
T Consensus 33 pRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk 70 (203)
T 3j21_O 33 PRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRD 70 (203)
T ss_dssp CEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSS
T ss_pred CEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhh
Confidence 589999999999999999 555899999999998853
No 7
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=97.66 E-value=7.1e-06 Score=54.63 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=32.5
Q ss_pred ccceeEEEeeeccceEEEEEeeccceEEEEEeccc
Q 048206 33 MRPFLFNVFFSKKFVHAKVMHRSISKVISVATTNV 67 (72)
Q Consensus 33 mrPf~L~vffSkk~V~A~ViHr~Ts~VvavAsT~s 67 (72)
.+.+-|.||+||++|+|||||-..++++++|||.+
T Consensus 24 ~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e 58 (114)
T 2zjr_L 24 SGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA 58 (114)
T ss_dssp TCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS
T ss_pred CCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH
Confidence 55567999999999999999999999999999987
No 8
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=96.07 E-value=0.0086 Score=45.65 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=30.7
Q ss_pred eeEEEeeeccceEEEEEee--ccceEEEEEecccccc
Q 048206 36 FLFNVFFSKKFVHAKVMHR--SISKVISVATTNVDDS 70 (72)
Q Consensus 36 f~L~vffSkk~V~A~ViHr--~Ts~VvavAsT~sKdl 70 (72)
+=|-||+||+.|.||||-- ..++|+|+|+|.+++.
T Consensus 49 pRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k 85 (297)
T 3u5e_D 49 YRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPR 85 (297)
T ss_dssp CEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGG
T ss_pred ceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhh
Confidence 4688999999999999997 4669999999999863
No 9
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=95.99 E-value=0.012 Score=44.89 Aligned_cols=34 Identities=3% Similarity=-0.012 Sum_probs=31.7
Q ss_pred eeEEEeeeccceEEEEEeec--cceEEEEEeccccc
Q 048206 36 FLFNVFFSKKFVHAKVMHRS--ISKVISVATTNVDD 69 (72)
Q Consensus 36 f~L~vffSkk~V~A~ViHr~--Ts~VvavAsT~sKd 69 (72)
|=|-|++||+.|.||||--. .+.|+|+|+|.+++
T Consensus 49 pRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~ 84 (297)
T 2zkr_n 49 YRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELP 84 (297)
T ss_dssp EEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGG
T ss_pred ceEEEEEecCcEEEEEEeccCCCCEEEEEeecCccc
Confidence 67999999999999999987 89999999998876
No 10
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=95.84 E-value=0.0078 Score=45.99 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=30.1
Q ss_pred eeEEEeeeccceEEEEEee--ccceEEEEEeccccc
Q 048206 36 FLFNVFFSKKFVHAKVMHR--SISKVISVATTNVDD 69 (72)
Q Consensus 36 f~L~vffSkk~V~A~ViHr--~Ts~VvavAsT~sKd 69 (72)
+=|-||.||+.|.||||.- ..++|+|+|+|.+++
T Consensus 49 pRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~ 84 (301)
T 4a17_M 49 YRLVARATNTRIIAQIVYATLKCDRVLCAADSYELK 84 (301)
T ss_dssp EEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHH
T ss_pred ceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccch
Confidence 5788999999999999997 345999999999875
No 11
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=90.26 E-value=0.2 Score=38.39 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=24.8
Q ss_pred eccceEEEEEee-ccc-eEEEEEecccccc
Q 048206 43 SKKFVHAKVMHR-SIS-KVISVATTNVDDS 70 (72)
Q Consensus 43 Skk~V~A~ViHr-~Ts-~VvavAsT~sKdl 70 (72)
||+.|.||||.- ..| +|+|+|+|.+.+.
T Consensus 57 SNrhIyaQII~~~i~GD~tLaSAsS~EL~k 86 (304)
T 3iz5_Q 57 TNKDITAQIVYATIAGDIVMAAAYSHELPR 86 (304)
T ss_dssp CSSCCEEEEEEEETTEEEEEEEEETTTGGG
T ss_pred cCCcEEEEEEecCCCCCEEEEEEecCchhh
Confidence 999999999997 455 9999999999874
No 12
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=24.14 E-value=38 Score=22.40 Aligned_cols=18 Identities=11% Similarity=0.562 Sum_probs=14.6
Q ss_pred hcccceeEEEeeeccceE
Q 048206 31 MYMRPFLFNVFFSKKFVH 48 (72)
Q Consensus 31 ~ymrPf~L~vffSkk~V~ 48 (72)
=|..||.|.+.|+.+-|.
T Consensus 56 F~~~PYyLRL~lP~~vve 73 (115)
T 3eud_A 56 FHLSPYYLRLRFPHELID 73 (115)
T ss_dssp EEETTEEEEEECSSCEEC
T ss_pred EecCCeEEEEecCcceec
Confidence 378999999999987553
No 13
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=23.98 E-value=9.3 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=16.6
Q ss_pred hhhhhhhhcccccccCCCcccHHHhhhhcc
Q 048206 4 IQAAWTRRSRGELDKRPNRKSWKQRTNMYM 33 (72)
Q Consensus 4 ~~a~w~r~s~~e~~k~~~~~sfkqrt~~ym 33 (72)
+++.|++.|- ||.=|++|.++|-
T Consensus 75 vl~~W~~~s~-------nr~~F~kr~~Ky~ 97 (100)
T 1wgr_A 75 VQAAWPVGGD-------SRFVFRKNFASGP 97 (100)
T ss_dssp HHTTSCSSSC-------CEEEECSCCSSSC
T ss_pred HHhhCccCCC-------cEEEEecchhccC
Confidence 4678999754 7777777777763
Done!