Query 048207
Match_columns 466
No_of_seqs 495 out of 1284
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 12:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.8E-47 2.7E-51 366.5 33.3 405 32-451 52-486 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.9E-38 6.6E-43 304.2 14.7 371 23-428 51-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.4E-35 4.9E-40 283.2 27.0 349 23-424 49-428 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.4E-32 8.1E-37 264.8 26.1 392 27-431 46-475 (491)
5 2gfp_A EMRD, multidrug resista 100.0 4.7E-34 1.6E-38 266.8 8.5 338 23-415 23-363 (375)
6 2xut_A Proton/peptide symporte 100.0 8.3E-29 2.8E-33 241.8 19.8 149 25-176 38-197 (524)
7 2cfq_A Lactose permease; trans 100.0 4.7E-30 1.6E-34 242.7 4.6 359 26-432 34-404 (417)
8 3o7q_A L-fucose-proton symport 99.4 5E-13 1.7E-17 126.9 8.6 151 244-406 31-182 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.4 3.8E-12 1.3E-16 121.4 14.7 149 26-177 279-433 (451)
10 2gfp_A EMRD, multidrug resista 99.4 2.5E-12 8.5E-17 119.5 11.4 164 254-432 15-179 (375)
11 2cfq_A Lactose permease; trans 99.3 4.5E-12 1.5E-16 119.4 9.0 146 33-181 257-404 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.3 1.7E-12 5.9E-17 125.2 6.2 162 249-425 23-193 (491)
13 2xut_A Proton/peptide symporte 99.2 2E-11 6.7E-16 118.8 10.8 158 254-425 27-195 (524)
14 4gc0_A D-xylose-proton symport 99.1 2.1E-10 7.3E-15 110.5 10.2 158 24-181 301-467 (491)
15 2g9p_A Antimicrobial peptide l 66.0 3.2 0.00011 19.4 1.4 14 54-67 2-15 (26)
16 3arc_T Photosystem II reaction 27.7 70 0.0024 16.7 2.7 12 171-182 17-28 (32)
17 4dve_A Biotin transporter BIOY 27.4 85 0.0029 25.1 4.7 25 41-65 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=7.8e-47 Score=366.54 Aligned_cols=405 Identities=24% Similarity=0.421 Sum_probs=320.1
Q ss_pred CCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhh------------------hccchhHHHH
Q 048207 32 FDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGG------------------SAFNIYMLIF 93 (466)
Q Consensus 32 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~------------------~~~~~~~l~~ 93 (466)
.+..+.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++++ +++|++.+++
T Consensus 52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 4566789999999999999999999999999999999999999999999988 4789999999
Q ss_pred HHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCC-----CcchHHHHHhhhHHHH
Q 048207 94 GRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKG-----GWGWKISLAMAAAPAS 168 (466)
Q Consensus 94 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~~wr~~f~~~~~~~~ 168 (466)
+|+++|+|.|+..+...++++|+.|+++|++..++.+.+..+|.++++.++.......+ .+.||+.+.+..++.+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999988876654322 2569999999999999
Q ss_pred HHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHH
Q 048207 169 ILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPF 248 (466)
Q Consensus 169 ~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (466)
+..+..+++||||+|+..+++ .+++++.+++..++++.+++..+.++..+++++... ... ....++.........
T Consensus 212 ~~~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~ 286 (491)
T 4gc0_A 212 LFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGG-RLL---MFGVGVIVIGVMLSI 286 (491)
T ss_dssp HHHHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHH---HSCCTHHHHHHHHHH
T ss_pred hhhhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhh-HHH---HhcccHHHHHHHHHH
Confidence 999999999999999999988 888888888776655444433333322222211111 111 122334555566666
Q ss_pred HHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHh
Q 048207 249 FQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAA 328 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (466)
+.+..+.+.+..|.+.+.+..+.+..... ......++..+++.++.+++.||+|||+.+..+...+.++++.+......
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence 67777788888999999888888777766 67778889999999999999999999999998888888887776655421
Q ss_pred hcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 048207 329 QLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF--- 405 (466)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--- 405 (466)
....+..+...+++..+++.++.++.+.+.+|++|++.|+++.|+.+.++++++.+++.+.+.+.+..
T Consensus 366 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~ 436 (491)
T 4gc0_A 366 ---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV 436 (491)
T ss_dssp ---------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred ---------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234445555666667777888888899999999999999999999999999999998887765432
Q ss_pred ---c-cceehhhHHHHHHHHHhhheecccCCCCCHHHHHHHHccccccch
Q 048207 406 ---K-AGVFFFFGGWLTVMTTFVHFFLPETKNVPIELMDKVWREHWFWRK 451 (466)
Q Consensus 406 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (466)
+ ...++++++++++..++.++++||||+|++||+|+.+|++.++++
T Consensus 437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccc
Confidence 2 224556677777777778889999999999999988876644433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.9e-38 Score=304.22 Aligned_cols=371 Identities=14% Similarity=0.051 Sum_probs=271.1
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh----ccchhHHHHHHHHh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS----AFNIYMLIFGRLLL 98 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~ 98 (466)
.|.+.+++ .|..+.|++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++ ++|++.++++|+++
T Consensus 51 ~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 129 (451)
T 1pw4_A 51 MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 129 (451)
T ss_dssp HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 47778899 99999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcc-hHHHHHhhhHHHHHHH-HHhhc
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWG-WKISLAMAAAPASILT-IGSLF 176 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~-~~~~~ 176 (466)
|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+. .+ ||+.|++.+++.++.. +..++
T Consensus 130 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 130 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999876543 45 9999999988777654 44566
Q ss_pred ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCc-chHHhhhhhhhhHHHHHHHHHHHHhcccc
Q 048207 177 LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINH-PFKKIIQRKYRPQLVMAILIPFFQQVTGV 255 (466)
Q Consensus 177 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (466)
+||+|+....+++++.+ ++.+.+. +++.+++...+. ..++.++ ++.++...+..+......
T Consensus 207 ~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 268 (451)
T 1pw4_A 207 MRDTPQSCGLPPIEEYK-----------NDYPDDY---NEKAEQELTAKQIFMQYVLP----NKLLWYIAIANVFVYLLR 268 (451)
T ss_dssp CCCSSTTTCCCSCTTTC-----------CC----------------CCTHHHHHHTSS----CHHHHHHHHHHHHHHHHH
T ss_pred ccCCHhhcCCCChhhhc-----------ccccccc---hhhhhcccccccchHHHHHc----CHHHHHHHHHHHHHHHHH
Confidence 88887643221110000 0000000 000000000010 1223332 233344444444444456
Q ss_pred hhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhc--CCeeeehhhhHHHH-HHHHHHHHHHHhhcC
Q 048207 256 NIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKL--GRKVLFLLGGIQML-VSQVMIGSIMAAQLG 331 (466)
Q Consensus 256 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 331 (466)
.....+.|.++++ .|.+....+ .......++.+++.++.+++.||+ +||+.+..+..+.. ++.+++...
T Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 341 (451)
T 1pw4_A 269 YGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN------ 341 (451)
T ss_dssp HHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh------
Confidence 6778888988876 788888877 888899999999999999999999 99888776655554 333332211
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHH-HHHHHHHHHHHHHhhccccee
Q 048207 332 DHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLL-FTSLVAQTFLAMLCHFKAGVF 410 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 410 (466)
+....+......++.+.+.+...... ..+..|.+|++.|+++.|+.+.+..+ +..++|.+.+.+.+..++...
T Consensus 342 -----~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 415 (451)
T 1pw4_A 342 -----PAGNPTVDMICMIVIGFLIYGPVMLI-GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 415 (451)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHTHHHHHH-HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred -----cccCHHHHHHHHHHHHHHHhchHHHH-HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 11233444444444554444333333 56668999999999999999999999 999999999999999886665
Q ss_pred hhhHHHHHHHHHhhheec
Q 048207 411 FFFGGWLTVMTTFVHFFL 428 (466)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~ 428 (466)
+...+.+.+++.+..+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 416 FMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555554444443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.4e-35 Score=283.17 Aligned_cols=349 Identities=9% Similarity=0.048 Sum_probs=261.8
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhh---hhccchhHHHHHHHHhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALG---GSAFNIYMLIFGRLLLG 99 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G 99 (466)
.|.+++++|+|..+.|++.+.+.++..++++++|+++||+|||++++++.++.+++.+++ +++++++.++++|+++|
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 128 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred hhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhc-ccCCC----------------------cch
Q 048207 100 VGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQ-KIKGG----------------------WGW 156 (466)
Q Consensus 100 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~----------------------~~w 156 (466)
++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +..+. .+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 208 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSV 208 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999887 43321 019
Q ss_pred HHHHHhhhHHHHHHHHHhhc--ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhh
Q 048207 157 KISLAMAAAPASILTIGSLF--LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQR 234 (466)
Q Consensus 157 r~~f~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (466)
|+.|++.+++.++..+..++ .||+++.. ++ ++ ++++.+.++++.+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~-~~---------------------------~~~~~~~~~~~~~~~ 257 (438)
T 3o7q_A 209 QTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS-DA---------------------------KQGSFSASLSRLARI 257 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC-CS---------------------------STTSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc-cc---------------------------cccchhhhHHHHHhC
Confidence 99998877666555443333 46654310 00 00 000111233444444
Q ss_pred hhhhHHHHHHHHHHHHhcccchhHHhhHHHH-Hhhh-CCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhh
Q 048207 235 KYRPQLVMAILIPFFQQVTGVNIISFYAPVL-FRTI-KLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGG 312 (466)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 312 (466)
+..+ ...+..+...........+.|.+ +++. |.+....+ .......++.+++.++.+++.||++||+.+..+.
T Consensus 258 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~ 332 (438)
T 3o7q_A 258 RHWR----WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA 332 (438)
T ss_dssp SHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3322 22233333333456677788888 7765 88888888 8888889999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHH
Q 048207 313 IQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTS 392 (466)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~ 392 (466)
.+..++.+++... +..+ ......+.+.+.+...+ ....+..|.+|++ ++.+.++.. .+.+++.
T Consensus 333 ~~~~~~~~~~~~~-------------~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~ 395 (438)
T 3o7q_A 333 LIAMALCLISAFA-------------GGHV-GLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG 395 (438)
T ss_dssp HHHHHHHHHHHHC-------------CHHH-HHHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH
T ss_pred HHHHHHHHHHHHc-------------CCcH-HHHHHHHHHHHHHHHHH-HHHHHHHhhcccc-ccchhhHHH-HHHHHHH
Confidence 7777666555432 1122 23333444555544443 4466667888876 888888877 6779999
Q ss_pred HHHHHHHHHHhhcc-cceehhhHHHHHHHHHhh
Q 048207 393 LVAQTFLAMLCHFK-AGVFFFFGGWLTVMTTFV 424 (466)
Q Consensus 393 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 424 (466)
++|.+.|.+.+..+ +...+...+++.+...+.
T Consensus 396 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 396 IVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 99999999999988 666666555444444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2.4e-32 Score=264.76 Aligned_cols=392 Identities=13% Similarity=0.034 Sum_probs=249.1
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh-hcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA-LGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFG 105 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 105 (466)
++|+|+|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45699999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHhcCCCcc--cCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc-cCChh
Q 048207 106 NQSVPLYLSEMAPPKC--RGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL-PETPN 182 (466)
Q Consensus 106 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~es~~ 182 (466)
.+...+++.|++|+++ |++++++++.+.++|..++|.+++.+.+. .+||+.|++.++..++..+..++. |+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999988 67788889999999999999999988775 459999999877666655444332 22110
Q ss_pred h---hhhcCCcHHHHHHHHHH----------------HhCccchHHHHHH--HH---H----HhhccccCCcchHHhhhh
Q 048207 183 S---IIQRTNDHQKAEKMLQR----------------VHGTADVQAELED--LI---R----ASSDSKNINHPFKKIIQR 234 (466)
Q Consensus 183 ~---~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~--~~---~----~~~~~~~~~~~~~~~~~~ 234 (466)
. ...++.+.++.++..+. ..+..+.+..... .. . .....++.+.+..+ ++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 280 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTE--HL 280 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHH--HH
Confidence 0 00111112232222221 0111110000000 00 0 00000000000000 11
Q ss_pred hhhhHHHHHHHHHHHHhcccchhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeeh----
Q 048207 235 KYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFL---- 309 (466)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~---- 309 (466)
+.. ......+........+.....+.+.+.++ .+.+....+ .......++.+++.++.+++.||++||+...
T Consensus 281 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 281 RVV--SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp -CT--THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 111 11111111222222234445556666654 455544455 6667778888899999999999999997765
Q ss_pred -hhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHH
Q 048207 310 -LGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGL 388 (466)
Q Consensus 310 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 388 (466)
.+..+..++.+++.......... .....+......++.+.+.+...+.. ..+..|.+|++.|+++.|+.+....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYGTS----GKVSPLWLVGSWALVILGEMLISPVG-LSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCCCC----TTCCTHHHHHHHHHHHHHHHTTTTHH-HHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CCccHHHHHHHHHHHHHHHHHHhHHH-HHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555555555544432111000 11223444455555555555444444 6677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccceehhhHHHHHHHHHhhheecccC
Q 048207 389 LFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
++..+++.+.+.+.+......+...++++.+..++.++..++.
T Consensus 433 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 433 VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877665444444555555555555555544443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=4.7e-34 Score=266.84 Aligned_cols=338 Identities=13% Similarity=0.131 Sum_probs=254.3
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+..+..++.++.++++|++.+++.|+++|++.
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHH-HhhcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTI-GSLFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es~ 181 (466)
+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+. .+||+.|++.++..++..+ ..+++||++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 999999999999999999999999999999999999999999988764 4699999998887777655 455678876
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
+.. ++ +++.+.++++.++++. ++...+..+...........+
T Consensus 180 ~~~---~~-------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T 2gfp_A 180 PVD---AP-------------------------------RTRLLTSYKTLFGNSG----FNCYLLMLIGGLAGIAAFEAC 221 (375)
T ss_dssp TTT---CC-------------------------------CCCTTTCSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---cc-------------------------------cccHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHHH
Confidence 421 00 0111223444444432 222233333333345566677
Q ss_pred HHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHH-HHHHHHHHHHHHHhhcCCCCCccch
Q 048207 262 APVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQ-MLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 262 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
.|.+.++ .|.+....+ .......++.+++.++.+++.||.+++ +..+... ...+...+..... +..
T Consensus 222 ~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~ 289 (375)
T 2gfp_A 222 SGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---------GVM 289 (375)
T ss_dssp CSCSSHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH---------HHH
T ss_pred HHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh---------ccc
Confidence 7877765 788877777 888888999999999999999998872 2222222 2222211111110 112
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHH
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGG 415 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (466)
+.+......++.+.+.+...+.. ..+..|..| +.|+++.|+.+....++..++|.+.+.+.+..++...+...+
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLA-TSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTT-HHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHH-HHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 33444455555666665554444 566689998 899999999999999999999999999887766655555443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=8.3e-29 Score=241.83 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=134.0
Q ss_pred ccccccc------CCcchhHHHHHhhhHHHHHHHHhHHhhhhhh-cchHHHHHHHHHHHHHHhhhhhcc-chhHHHHHHH
Q 048207 25 KVSDYCK------FDSQLLTSLTSSLYITGILASLIASSVTRAL-GGKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRL 96 (466)
Q Consensus 25 ~i~~~~~------~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~ 96 (466)
.+++++| +|..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|+
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLF 117 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3456677 9999999999999999999999999999999 999999999999999999999999 9999999999
Q ss_pred HhhhhhhhhhhhhhHHHHhcCCCcccCchhhH---HHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH
Q 048207 97 LLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIG---FQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG 173 (466)
Q Consensus 97 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 173 (466)
+.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+. .+||+.|++.++..++..+.
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877666 8999999999999999888764 45999999988877665555
Q ss_pred hhc
Q 048207 174 SLF 176 (466)
Q Consensus 174 ~~~ 176 (466)
.++
T Consensus 195 ~~~ 197 (524)
T 2xut_A 195 FWL 197 (524)
T ss_dssp HHS
T ss_pred HHH
Confidence 443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=4.7e-30 Score=242.70 Aligned_cols=359 Identities=10% Similarity=0.008 Sum_probs=218.7
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHH---hhhhhccch-hHHHHHHHHhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGS---ALGGSAFNI-YMLIFGRLLLGVG 101 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~---~~~~~~~~~-~~l~~~r~l~G~~ 101 (466)
+++++|+|+.+.|++.+.+.++..++++++|+++||+|||++++++..+++++. ....+++.. ..+...+++.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999888775532 222333322 2345567777766
Q ss_pred hhhhhhhhhHHHHhcCCC--cccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccC
Q 048207 102 IDFGNQSVPLYLSEMAPP--KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 179 (466)
.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++..+..++.+|
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 665554444445454433 456777788877888899999999888765 35999999888776555555555444
Q ss_pred ChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHH
Q 048207 180 TPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIIS 259 (466)
Q Consensus 180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
+++. +.+ .++.+ +.++++....++++.++++...... +..+.....+....
T Consensus 190 ~~~~---~~~-~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 190 DAPS---SAT-VANAV---------------------GANHSAFSLKLALELFRQPKLWFLS----LYVIGVSCTYDVFD 240 (417)
T ss_dssp CCSC---SSC-SSSSS---------------------SSCCCCCCHHHHHHHTTCHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cccc---ccc-ccccc---------------------ccccccccHHHHHHHhcCCchhhHH----HHHHHHHHHHHHHH
Confidence 3311 000 00000 0000000011233444433222222 11111111233344
Q ss_pred hhHHHHHhhh-CC---CcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 048207 260 FYAPVLFRTI-KL---SENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG 335 (466)
Q Consensus 260 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
.+.|.++++. +. +....+ .......++.+++.++.++++||+|||+.+..+..+..+..+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---------- 309 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---------- 309 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 4566665442 21 122223 56667777888899999999999999998877766665554433211
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHH-HHHHHHHHHHHHHHHHHHHhhcccceehhhH
Q 048207 336 FSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSIT-VAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG 414 (466)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
+..+..+....+.+.+......+ .+.+++|.+|++.|+++.++. +....+++.++|.+.|.+.+..++...+...
T Consensus 310 ---~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 310 ---TSALEVVILKTLHMFEVPFLLVG-CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp ---CSHHHHHHHTTHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 11222333333333332222222 256778999999999999995 7788899999999999999877755444444
Q ss_pred HHHHHHHH-hhheecccCC
Q 048207 415 GWLTVMTT-FVHFFLPETK 432 (466)
Q Consensus 415 ~~~~~~~~-~~~~~~~~~~ 432 (466)
+.+.+++. +.+...+|++
T Consensus 386 ~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 386 GLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHhhhcCCC
Confidence 44444443 3344445433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39 E-value=5e-13 Score=126.93 Aligned_cols=151 Identities=13% Similarity=0.025 Sum_probs=117.7
Q ss_pred HHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHH
Q 048207 244 ILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIG 323 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 323 (466)
..+..+.............|.+.++++.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.++..++.++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3333443333445666778888899999999888 899999999999999999999999999999999998888887774
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH-
Q 048207 324 SIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAML- 402 (466)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~- 402 (466)
.... .++.+..++..++.+.+.+...... ..+..|.+|++.|+.++++.+....+|..+++.+.+.+.
T Consensus 110 ~~~~----------~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 110 PAAE----------IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHH----------TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hccc----------cccHHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3221 1334555666666666666555444 666789999999999999999999999999999999888
Q ss_pred hhcc
Q 048207 403 CHFK 406 (466)
Q Consensus 403 ~~~~ 406 (466)
+..+
T Consensus 179 ~~~~ 182 (438)
T 3o7q_A 179 SNVP 182 (438)
T ss_dssp TSSC
T ss_pred cccc
Confidence 4443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.39 E-value=3.8e-12 Score=121.36 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=129.6
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh--cchHHHHHHHHHHH-HHHhhhhhc--cchhHHHHHHHHhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL--GGKVSILIGGVAFL-AGSALGGSA--FNIYMLIFGRLLLGV 100 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~l~G~ 100 (466)
+++.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|+
T Consensus 279 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 358 (451)
T 1pw4_A 279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 358 (451)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999999999 99999988887776 777777776 367888888999999
Q ss_pred hhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHH-HHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc
Q 048207 101 GIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVAT-GILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL 177 (466)
Q Consensus 101 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 177 (466)
+.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+.. +|+..|++.++..++..+..+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99988898899999999999999999999999999 9999999999888754 59999998888777766555443
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.36 E-value=2.5e-12 Score=119.46 Aligned_cols=164 Identities=14% Similarity=0.109 Sum_probs=124.5
Q ss_pred cchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 254 GVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
.........|.+.++.|.+..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------
Confidence 345556667778888999998888 88999999999999999999999999999999988888888777654
Q ss_pred CCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhh
Q 048207 334 GGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
++.+.......+.+.+.+.... ....+..|.+|+++|++++++.+....++..++|.+.+.+.+..++...+..
T Consensus 86 -----~~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 86 -----SSLTVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 2344445555555555544433 3356668999999999999999999999999999999999887776655554
Q ss_pred HHHHHHHHHh-hheecccCC
Q 048207 414 GGWLTVMTTF-VHFFLPETK 432 (466)
Q Consensus 414 ~~~~~~~~~~-~~~~~~~~~ 432 (466)
.++..+...+ ..+..||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHCcccC
Confidence 4444444333 445556544
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.30 E-value=4.5e-12 Score=119.41 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=122.5
Q ss_pred CcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHH
Q 048207 33 DSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLY 112 (466)
Q Consensus 33 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 112 (466)
+..+.+++.+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566888888888999999999999999999999999999998888888888888888888888898887777778889
Q ss_pred HHhcCCCcccCchhhH-HHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh-hcccCCh
Q 048207 113 LSEMAPPKCRGAFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS-LFLPETP 181 (466)
Q Consensus 113 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es~ 181 (466)
+.|.+|++.|++..++ ++....+|..++|.+++.+.+. .+++..|.+.++++++..+.. .+.||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999888 4788889999999999987764 458888988887777765543 4456654
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.30 E-value=1.7e-12 Score=125.18 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=119.9
Q ss_pred HHhcccchhHHhhHHHHHhh------hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCeeeehhhhHHHHHHHHH
Q 048207 249 FQQVTGVNIISFYAPVLFRT------IKLSENTSLLMSALVTGGIGTVSAILPMILADK-LGRKVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~ 321 (466)
+.....++....+.+.++++ .|.+..+.+ +..+...++..++.++.|+++|| +|||+.+..+.++..++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 33333455565666666654 788888888 88999999999999999999999 89999999988888877776
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccc--hhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEI--RSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
+... ++.+...+..++.+.+.+...+.. ..++.|.+|++. |+.+.++.+....+|..++|.+.+
T Consensus 102 ~~~~-------------~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 102 LALP-------------FGASALFGSIILIIIGTGFLKPNV-STLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp HHSC-------------CSTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-------------hhHHHHHHHHHHHHHHHHhccchH-HHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence 6532 233445555555666555544444 566689999988 777888899999999999999999
Q ss_pred HHHhhcccceehhhHHHHHHHHHhhh
Q 048207 400 AMLCHFKAGVFFFFGGWLTVMTTFVH 425 (466)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (466)
.+.+..++...+...++..+++.+..
T Consensus 168 ~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 168 AAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99998887766655554444444433
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.25 E-value=2e-11 Score=118.81 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=115.5
Q ss_pred cchhHHhhHHHHH-hhhC------CCcchhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCeeeehhhhHHHHHHHHHHHHH
Q 048207 254 GVNIISFYAPVLF-RTIK------LSENTSLLMSALVTGGIGTVSAILPMILADKL-GRKVLFLLGGIQMLVSQVMIGSI 325 (466)
Q Consensus 254 ~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~ 325 (466)
.++....+.+.++ ++.+ .+..+.+ +......++..++.++.|+++||+ |||+.+..+.++..++.+++.+.
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666665 4578 8888888 888999999999999999999999 99999998888887777666543
Q ss_pred HHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHH---HHHHHHHHHHHHHHHHHHHH
Q 048207 326 MAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSI---TVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~~ 402 (466)
+ .+.+..++..++.+.+.+...+.. ..+..|.+|++.|+...+. .+....+|..++|.+.+.+.
T Consensus 106 -----------~-~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 106 -----------E-HSVQGFYTGLFLIALGSGGIKPLV-SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp -----------S-SCHHHHHHHHHHHHHHHHTTHHHH-HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred -----------c-ccHHHHHHHHHHHHHhccccchhH-HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 134445555556666655544444 5666899999999876665 88889999999999999998
Q ss_pred hhcccceehhhHHHHHHHHHhhh
Q 048207 403 CHFKAGVFFFFGGWLTVMTTFVH 425 (466)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~ 425 (466)
+..++...+...+++.++..+..
T Consensus 173 ~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 173 KNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHH
Confidence 88776665555544444444433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.11 E-value=2.1e-10 Score=110.51 Aligned_cols=158 Identities=15% Similarity=0.023 Sum_probs=110.4
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc-----cchhHHHHHHHHh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA-----FNIYMLIFGRLLL 98 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~ 98 (466)
|.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+...-+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 44556667777777777888888999999999999999999999999888888777665443 1122222222222
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC---CCcchHHHHHhhhHHHHHHH-HHh
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK---GGWGWKISLAMAAAPASILT-IGS 174 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~wr~~f~~~~~~~~~~~-~~~ 174 (466)
+.......+....+.+|.+|.+.|++++++......+|..+++.+...+.+.. ...++...|++.++++++.. +.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222344677789999999999999999999999999888877655543311 01234566777777766654 455
Q ss_pred hcccCCh
Q 048207 175 LFLPETP 181 (466)
Q Consensus 175 ~~~~es~ 181 (466)
+++|||.
T Consensus 461 ~~~PETk 467 (491)
T 4gc0_A 461 KFVPETK 467 (491)
T ss_dssp HHCCCCT
T ss_pred heecCCC
Confidence 6799985
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=66.01 E-value=3.2 Score=19.43 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=11.5
Q ss_pred hHHhhhhhhcchHH
Q 048207 54 IASSVTRALGGKVS 67 (466)
Q Consensus 54 ~~g~l~dr~Grr~~ 67 (466)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999875
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=27.75 E-value=70 Score=16.72 Aligned_cols=12 Identities=25% Similarity=0.478 Sum_probs=7.9
Q ss_pred HHHhhcccCChh
Q 048207 171 TIGSLFLPETPN 182 (466)
Q Consensus 171 ~~~~~~~~es~~ 182 (466)
+....+.+|+|+
T Consensus 17 iFFAI~FRePPr 28 (32)
T 3arc_T 17 FFFAIFFREPPR 28 (32)
T ss_dssp HHHHHHTSCCCC
T ss_pred HHHhhhhcCCCC
Confidence 344556788885
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.43 E-value=85 Score=25.11 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=19.3
Q ss_pred HHhhhHHHHHHHHhHHhhhhhhcch
Q 048207 41 TSSLYITGILASLIASSVTRALGGK 65 (466)
Q Consensus 41 ~s~~~l~~~i~~~~~g~l~dr~Grr 65 (466)
+.-|.+|+.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456788888889999999987644
Done!