BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048208
         (290 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P52276|SYN_SYNY3 Asparagine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 /
           Kazusa) GN=asnS PE=3 SV=2
          Length = 462

 Score = 33.5 bits (75), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 27/182 (14%)

Query: 126 PRVSNEVGAYLRSRKKANKAIHKSLR----------VLKTSPCSSSEN----ETIAMIII 171
           PR +N +GA +R R     AIH+  +          ++  S C  + +     T+ +  +
Sbjct: 126 PR-TNTIGAVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGDLFKVTTLDLQRV 184

Query: 172 LREVEGVTYTV-FESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAE----AIEINEF 226
            +  EG+ Y+  F    +YL+   GQ      +L  + ++T   T  AE    +  + EF
Sbjct: 185 PKNGEGIDYSQDFFGKQAYLT-VSGQLEAEVMALAFQNVYTFGPTFRAENSNTSRHLAEF 243

Query: 227 EKVDA--ALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSL 284
             V+   A C L G++     FL     +     LE C +D+E   + +   ++ T  ++
Sbjct: 244 WMVEPEMAFCDLEGDRQWAEEFLK----YIFKFVLEKCPEDMEFFDQRIDNTVLATADNI 299

Query: 285 LN 286
           +N
Sbjct: 300 IN 301


>sp|P22687|CETP_RABIT Cholesteryl ester transfer protein (Fragment) OS=Oryctolagus
           cuniculus GN=CETP PE=2 SV=1
          Length = 497

 Score = 32.3 bits (72), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 13/109 (11%)

Query: 96  VCGTAKDALTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKT 155
           VC   K AL  + ++T  +  T  +R GY P VS E    L  R K    +H +L++   
Sbjct: 13  VCRITKPALLVLNQETAKVVQTAFQRAGY-PDVSGERAVMLLGRVK--YGLH-NLQISHL 68

Query: 156 SPCSSSENETIAMIIILREVEGVTYTVFESLLSYLSGTKGQSYQSRWSL 204
           S  +SS+ E +    I   ++ V+  VF+  L+Y       SY S W L
Sbjct: 69  S-IASSQVELVDAKTIDVAIQNVS-VVFKGTLNY-------SYTSAWGL 108


>sp|A3CQI5|SYP_STRSV Proline--tRNA ligase OS=Streptococcus sanguinis (strain SK36)
           GN=proS PE=3 SV=1
          Length = 616

 Score = 31.6 bits (70), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 104 LTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLK 154
           L +M  D QV+   L  R GY  +VS  V +YL     AN+ I K+ R+++
Sbjct: 11  LREMPSDAQVISHALMLRAGYVRQVSAGVYSYL---PLANRVIEKAKRIMR 58


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.128    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,866,823
Number of Sequences: 539616
Number of extensions: 3528093
Number of successful extensions: 10999
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 10993
Number of HSP's gapped (non-prelim): 33
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)