Query 048208
Match_columns 290
No_of_seqs 113 out of 314
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pnv_A Small conductance calci 59.3 12 0.00041 24.5 3.9 29 249-277 11-39 (43)
2 3ljm_A Coil Ser L9C; de novo d 47.6 20 0.00069 21.2 3.1 22 252-273 6-27 (31)
3 3dyt_A Sorting nexin-9; 3-heli 41.8 1.7E+02 0.0058 26.8 10.3 60 46-115 230-289 (366)
4 1mof_A Moloney murine leukemia 38.4 36 0.0012 23.4 3.7 30 255-284 3-32 (55)
5 2w6b_A RHO guanine nucleotide 37.9 96 0.0033 21.2 6.0 45 102-153 10-54 (56)
6 2akf_A Coronin-1A; coiled coil 36.0 25 0.00087 21.1 2.3 16 249-264 15-30 (32)
7 1y4m_A HERV-FRD_6P24.1 proviru 33.6 25 0.00084 24.1 2.3 29 256-284 2-30 (53)
8 2ket_A Cathelicidin-6; antimic 32.4 38 0.0013 19.4 2.5 15 135-149 3-17 (27)
9 4akv_A Sorting nexin-33; trans 28.8 3.5E+02 0.012 25.0 12.0 57 46-112 250-306 (386)
10 3kyj_A CHEA3, putative histidi 25.6 61 0.0021 26.0 3.8 29 249-277 17-51 (144)
11 3c3f_A Alpha/beta peptide with 23.2 1.1E+02 0.0039 18.8 3.7 23 251-273 5-27 (34)
12 2p22_C Protein SRN2; endosome, 22.3 3.5E+02 0.012 22.8 12.1 44 97-143 130-175 (192)
13 3onj_A T-snare VTI1; helix, HA 20.2 1.4E+02 0.0047 22.3 4.6 35 248-282 35-74 (97)
No 1
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=59.34 E-value=12 Score=24.49 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 048208 249 PEDVHNMLGELESCTQDLEGGFESLQRRL 277 (290)
Q Consensus 249 ~~~~~~~le~LE~~I~~lE~gle~lFR~L 277 (290)
+-+++.+-++||..|..||..++.+-+.+
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998876654
No 2
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=47.56 E-value=20 Score=21.16 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhHH
Q 048208 252 VHNMLGELESCTQDLEGGFESL 273 (290)
Q Consensus 252 ~~~~le~LE~~I~~lE~gle~l 273 (290)
+.++.-+||.-++.||..+|.+
T Consensus 6 lekkcaalesklqalekkleal 27 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666555543
No 3
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=41.78 E-value=1.7e+02 Score=26.83 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=39.7
Q ss_pred hHHhHHHhhHHHHHhHHHHHcCchhHHHHHHhhhhhhHHHhhhhhhHHHHHhhhHHHHHHhhhHHHHHHH
Q 048208 46 SICNNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLE 115 (290)
Q Consensus 46 si~~~L~~L~~l~~~v~~Ll~lP~tQ~aL~~~~~~k~vee~LD~Sl~LLDvC~~~rd~l~~lke~~~eLq 115 (290)
.+..+|..+++.++.+.++..- +-+.+...+.|.-=..++++++++|+|..=+...+..+
T Consensus 230 ~L~~al~~l~~~~~~i~~l~~~----------qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~ 289 (366)
T 3dyt_A 230 DLNDAITEAGKTYEEIASLVAE----------QPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVK 289 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------SGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888732 11234556666666678888888888765554444333
No 4
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=38.42 E-value=36 Score=23.43 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHhh
Q 048208 255 MLGELESCTQDLEGGFESLQRRLIKTRVSL 284 (290)
Q Consensus 255 ~le~LE~~I~~lE~gle~lFR~LI~tRVsL 284 (290)
-+++++.+|..|+..+..+--..+|+|-+|
T Consensus 3 dl~~~~~si~~l~~ql~sla~vvlQNRraL 32 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSEVVLQNRRGL 32 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999876
No 5
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=37.90 E-value=96 Score=21.23 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=26.5
Q ss_pred HHHHhhhHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 048208 102 DALTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVL 153 (290)
Q Consensus 102 d~l~~lke~~~eLqsaLRRr~g~~~~~~~~v~~y~~~rkk~kK~i~K~l~~L 153 (290)
|+.-++|..|++||--..+-. ..+..=-++||.+.+-+.|.+.++
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~-------k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMK-------KSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555566666655444432 133334568898888888876543
No 6
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=36.00 E-value=25 Score=21.08 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHhhh
Q 048208 249 PEDVHNMLGELESCTQ 264 (290)
Q Consensus 249 ~~~~~~~le~LE~~I~ 264 (290)
+|.+|+++..||..++
T Consensus 15 vq~lq~r~drle~tvq 30 (32)
T 2akf_A 15 VQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5677888888887765
No 7
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=33.64 E-value=25 Score=24.06 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=25.7
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHhh
Q 048208 256 LGELESCTQDLEGGFESLQRRLIKTRVSL 284 (290)
Q Consensus 256 le~LE~~I~~lE~gle~lFR~LI~tRVsL 284 (290)
+++|+.+|..+++.+..+--..+|+|-+|
T Consensus 2 ~~~l~~sl~~l~~ql~sla~vvlQNRraL 30 (53)
T 1y4m_A 2 IDTMAKALTTMQEQIDSLAAVVLQNRRGL 30 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999876
No 8
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=32.42 E-value=38 Score=19.37 Aligned_cols=15 Identities=40% Similarity=0.428 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q 048208 135 YLRSRKKANKAIHKS 149 (290)
Q Consensus 135 y~~~rkk~kK~i~K~ 149 (290)
|-|+|||.||-++|.
T Consensus 3 fkrfrkkfkklfkkl 17 (27)
T 2ket_A 3 FKRFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 568899888877764
No 9
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=28.78 E-value=3.5e+02 Score=24.97 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=35.8
Q ss_pred hHHhHHHhhHHHHHhHHHHHcCchhHHHHHHhhhhhhHHHhhhhhhHHHHHhhhHHHHHHhhhHHHH
Q 048208 46 SICNNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQ 112 (290)
Q Consensus 46 si~~~L~~L~~l~~~v~~Ll~lP~tQ~aL~~~~~~k~vee~LD~Sl~LLDvC~~~rd~l~~lke~~~ 112 (290)
.+..+|+.++++++.+.++..- +-......+.|..=...+++++++|+|-.-+...+
T Consensus 250 ~Ls~aL~~l~~~~e~i~~l~~~----------Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~ 306 (386)
T 4akv_A 250 ALNSAISHTGRTYEAIGEMFAE----------QPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFA 306 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777776621 22334455566666667778888887655544333
No 10
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=25.59 E-value=61 Score=25.99 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhh------hhHHHHHH
Q 048208 249 PEDVHNMLGELESCTQDLEGG------FESLQRRL 277 (290)
Q Consensus 249 ~~~~~~~le~LE~~I~~lE~g------le~lFR~L 277 (290)
++++.+.|+.+|..+..+|.+ ++.+||.+
T Consensus 17 leEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~ 51 (144)
T 3kyj_A 17 ADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAV 51 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 345677888888888877764 67788864
No 11
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.24 E-value=1.1e+02 Score=18.76 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHH
Q 048208 251 DVHNMLGELESCTQDLEGGFESL 273 (290)
Q Consensus 251 ~~~~~le~LE~~I~~lE~gle~l 273 (290)
.+-.+.|+|=.+-.+||.+++.+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 44456677777777788888776
No 12
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=22.33 E-value=3.5e+02 Score=22.76 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=23.4
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHhhcCCC--CchhhhhHHHHHHHHHHHH
Q 048208 97 CGTAKDALTQMKEDTQVLESTLRRRRGY--EPRVSNEVGAYLRSRKKAN 143 (290)
Q Consensus 97 C~~~rd~l~~lke~~~eLqsaLRRr~g~--~~~~~~~v~~y~~~rkk~k 143 (290)
+.-++.++....+--..+.--. .+| +..+..=|..|...|+...
T Consensus 130 ~~~L~~a~~e~eeeS~~l~~~F---~~~~~e~dv~~Fl~~y~~~R~~yH 175 (192)
T 2p22_C 130 KKKLEQNTKKLDEESSQLETTT---RSIDSADDLDQFIKNYLDIRTQYH 175 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC---SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---cCCcccchHHHHHHHHHHHHHHHH
Confidence 4455555555555444444322 122 4456666667777777553
No 13
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.19 E-value=1.4e+02 Score=22.30 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhHH-----HHHHHHHHH
Q 048208 248 NPEDVHNMLGELESCTQDLEGGFESL-----QRRLIKTRV 282 (290)
Q Consensus 248 ~~~~~~~~le~LE~~I~~lE~gle~l-----FR~LI~tRV 282 (290)
.+..+...+++.+..|+.+|.++..+ +|.-.++|+
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~kl 74 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKL 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35566667777777777777777777 666666654
Done!