Query 048208
Match_columns 290
No_of_seqs 113 out of 314
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 12:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048208.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048208hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b5la_ a.26.1.3 (A:) Interfer 33.0 72 0.0053 24.4 7.6 68 55-123 55-136 (164)
2 d1wu9a1 a.245.1.1 (A:191-249) 26.3 31 0.0023 22.3 3.5 32 248-279 2-33 (59)
3 d1tqga_ a.24.10.3 (A:) Chemota 21.6 40 0.0029 23.2 3.7 16 252-267 14-29 (105)
4 d2hkja2 d.14.1.3 (A:307-470) T 18.8 11 0.0008 29.6 -0.1 44 99-149 119-162 (164)
5 d1i5na_ a.24.10.3 (A:) Chemota 15.9 58 0.0042 23.0 3.5 13 254-266 15-27 (128)
6 d2d8da1 a.130.1.1 (A:3-82) Cho 13.1 75 0.0055 20.8 3.2 56 224-280 8-78 (80)
7 d2g5ca1 a.100.1.12 (A:201-310) 13.0 82 0.006 22.1 3.6 45 94-144 60-108 (110)
8 d1vp7a_ a.7.13.1 (A:) Exonucle 12.9 1.7E+02 0.013 18.8 6.1 28 109-136 10-37 (68)
9 d2h9da1 a.130.1.1 (A:1-94) Sal 10.0 2.3E+02 0.017 18.8 5.2 58 222-280 13-85 (94)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 8.6 2.5E+02 0.018 17.9 5.4 27 249-275 49-75 (79)
No 1
>d1b5la_ a.26.1.3 (A:) Interferon-tau {Sheep (Ovis aries) [TaxId: 9940]}
Probab=32.96 E-value=72 Score=24.40 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=40.9
Q ss_pred HHHHHhHHHHHcCchhHHHHHHhhhhhhHHHhhhhh---hHHHHHhhh-----------HHHHHHhhhHHHHHHHHHHhh
Q 048208 55 SDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRS---LRLMDVCGT-----------AKDALTQMKEDTQVLESTLRR 120 (290)
Q Consensus 55 ~~l~~~v~~Ll~lP~tQ~aL~~~~~~k~vee~LD~S---l~LLDvC~~-----------~rd~l~~lke~~~eLqsaLRR 120 (290)
.-+|+-+..++.+=. +..-+..|++..+|.+|.+- +.-|+.|-. ..+..+.+|.|-+.+...|+.
T Consensus 55 ~~~~emlqqif~LF~-~~~s~a~W~~t~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~~~~~~~l~lk~YF~rI~~yLk~ 133 (164)
T d1b5la_ 55 PVLYEMLQQSFNLFY-TEHSSAAWDTTLLEQLCTGLQQQLDHLDTCRGQVMGEEDSELGNMDPIVTVKKYFQGIYDYLQE 133 (164)
T ss_dssp HHHHHHHHHHHHHHH-HHHTTSCTTCHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCChhccCHHHHHHHHHHHHHHHHHHHHHHHHHccccccCcCCccchHHHHHHHHHHHHHHHh
Confidence 345555555553322 22334457777777766554 667777831 235667788888888888887
Q ss_pred cCC
Q 048208 121 RRG 123 (290)
Q Consensus 121 r~g 123 (290)
++.
T Consensus 134 K~y 136 (164)
T d1b5la_ 134 KGY 136 (164)
T ss_dssp TTT
T ss_pred CCC
Confidence 753
No 2
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.31 E-value=31 Score=22.32 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 048208 248 NPEDVHNMLGELESCTQDLEGGFESLQRRLIK 279 (290)
Q Consensus 248 ~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~ 279 (290)
++..+..++.+|...++++|.+=+.-|-.|=.
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KLRd 33 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRN 33 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999998888887743
No 3
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.64 E-value=40 Score=23.18 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhhhh
Q 048208 252 VHNMLGELESCTQDLE 267 (290)
Q Consensus 252 ~~~~le~LE~~I~~lE 267 (290)
+.+.++.++..|..+|
T Consensus 14 a~e~l~~l~~~l~~le 29 (105)
T d1tqga_ 14 TKEYLQNLNDTLLELE 29 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554443
No 4
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=18.81 E-value=11 Score=29.61 Aligned_cols=44 Identities=16% Similarity=0.365 Sum_probs=31.4
Q ss_pred hHHHHHHhhhHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHHHHHHHHHH
Q 048208 99 TAKDALTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKS 149 (290)
Q Consensus 99 ~~rd~l~~lke~~~eLqsaLRRr~g~~~~~~~~v~~y~~~rkk~kK~i~K~ 149 (290)
+.||++...-|-..|++.||+-- .-+.+.|++-+++.++.-+|.
T Consensus 119 ~sKEaIad~~EI~~EirlAl~~~-------~R~L~~~l~kk~k~~~~~~k~ 162 (164)
T d2hkja2 119 AGKESIAEVEDIEKEIKNALMEV-------ARKLKQYLSEKRKEQEAKKKL 162 (164)
T ss_dssp TTCCCBCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 45777777788888888888753 237778887777776666654
No 5
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=15.88 E-value=58 Score=23.03 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=5.5
Q ss_pred HHHHHHHHhhhhh
Q 048208 254 NMLGELESCTQDL 266 (290)
Q Consensus 254 ~~le~LE~~I~~l 266 (290)
++++.++.++..+
T Consensus 15 e~l~~l~~~l~~l 27 (128)
T d1i5na_ 15 ELLADMEQHLLDL 27 (128)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 6
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=13.09 E-value=75 Score=20.77 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHhhhcc-----------CC--CCC--CCCChHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 048208 224 NEFEKVDAALCSLIGN-----------KS--RKS--TFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKT 280 (290)
Q Consensus 224 nEl~~vDaal~~l~~~-----------~~--~~~--~~~~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~t 280 (290)
++++.+|..+..|+.. |. ..| .+...+.+.+++.+...+ .--...++.+||.+|..
T Consensus 8 ~~ID~iD~~i~~Ll~~R~~~~~~i~~~K~~~~~~i~~~~RE~~v~~~~~~~~~~-~l~~~~i~~i~r~Ii~~ 78 (80)
T d2d8da1 8 KEVDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEMLAYLTAENPG-PFPDETIRKLFKEIFKA 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHCCS-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 5677788887777542 10 001 022233444455554443 34556789999998863
No 7
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=13.03 E-value=82 Score=22.15 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHhhhHHH----HHHhhhHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHHHHH
Q 048208 94 MDVCGTAKD----ALTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANK 144 (290)
Q Consensus 94 LDvC~~~rd----~l~~lke~~~eLqsaLRRr~g~~~~~~~~v~~y~~~rkk~kK 144 (290)
.|||..=++ .|..+.+...++..+|.+.|. .++.+|+..-|+.++
T Consensus 60 ~dI~~~N~~~i~~~l~~~~~~L~~~~~~l~~~D~------~~l~~~l~~a~~~R~ 108 (110)
T d2g5ca1 60 RDIFLENKENVMKAIEGFEKSLNHLKELIVREAE------EELVEYLKEVKIKRM 108 (110)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHh
Confidence 466655443 344455556666777766542 367777765554444
No 8
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=12.85 E-value=1.7e+02 Score=18.78 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhcCCCCchhhhhHHHHH
Q 048208 109 EDTQVLESTLRRRRGYEPRVSNEVGAYL 136 (290)
Q Consensus 109 e~~~eLqsaLRRr~g~~~~~~~~v~~y~ 136 (290)
+.+..|+.++++-..|+..++..+..|=
T Consensus 10 e~l~~LE~IV~~LE~g~l~Leesl~~ye 37 (68)
T d1vp7a_ 10 TALAELESLVSAMENGTLPLEQSLSAYR 37 (68)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445555666666667888998999883
No 9
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.95 E-value=2.3e+02 Score=18.80 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=31.6
Q ss_pred hhhhhHHHHHHHHhhhcc--------CCCCC------CCCChHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHH
Q 048208 222 EINEFEKVDAALCSLIGN--------KSRKS------TFLNPEDVHNMLGELESCTQDLEG-GFESLQRRLIKT 280 (290)
Q Consensus 222 ~~nEl~~vDaal~~l~~~--------~~~~~------~~~~~~~~~~~le~LE~~I~~lE~-gle~lFR~LI~t 280 (290)
.-++++.+|..+..|+.. ...|. .....+.+.+++.+.-... +|+. -++.+||.+|..
T Consensus 13 lR~~ID~ID~~i~~LL~~R~~l~~~i~~~K~~~~~v~d~~Re~~vl~~~~~~a~~~-gl~~~~i~~i~~~ii~~ 85 (94)
T d2h9da1 13 IREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEEN-GLDAPFVEGLFAQIIHW 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcHHHHHHHHHHHHHHHhhC-CcCHHHHHHHHHHHHHH
Confidence 446788899998887552 11111 1223344444444432221 3433 478999999975
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.61 E-value=2.5e+02 Score=17.87 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 048208 249 PEDVHNMLGELESCTQDLEGGFESLQR 275 (290)
Q Consensus 249 ~~~~~~~le~LE~~I~~lE~gle~lFR 275 (290)
++.++...+.++..++.|..+.+.|=+
T Consensus 49 I~~L~~~~~~l~~~~~~L~~~~~~L~~ 75 (79)
T d1nlwa_ 49 IKKLEDSDRKAVHQIDQLQREQRHLKR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555444433
Done!