BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048209
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/339 (55%), Positives = 234/339 (69%), Gaps = 19/339 (5%)
Query: 16 HKQTMEKIEHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIA 75
H M+KIEH V NG+NMH+A +G GP +LFIHGFPELWYSWR+Q++YL+ RGYRA+A
Sbjct: 4 HHHHMKKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVA 63
Query: 76 PDLRGYGDTDAPP--SVTSYTALHXXXXXXXXXXXXXXHQ--VFLVGHDWGALIAWYFCL 131
PDLRGYGDT P + ++ LH ++ VF+V HDWGALIAW+ CL
Sbjct: 64 PDLRGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCL 123
Query: 132 FRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARL 191
FRPD+VKALVN+SV F RNP + + +A+YG+D+YI RFQ PGEIE EFA I +
Sbjct: 124 FRPDKVKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSV 183
Query: 192 MKKFLCLRIAKPLCIPKDTGLSTVPD-PSALPSWLSEEDVNYYASKFNQKGFTGPVNYYR 250
+KK L R P PK GL +PD P AL SWLSEE+++YYA+KF Q GFTG VNYYR
Sbjct: 184 LKKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYR 243
Query: 251 CSDLYVPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGF 310
+ NWEL APWTG Q++VP KFIVG+ DLVY+ G KEYIH+GGF
Sbjct: 244 ALPI--------------NWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGF 289
Query: 311 KKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349
KK VP L+EVVV+EG AHF++QE+ E+ HIY+FI+KF
Sbjct: 290 KKDVPLLEEVVVLEGAAHFVSQERPHEISKHIYDFIQKF 328
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/339 (55%), Positives = 234/339 (69%), Gaps = 19/339 (5%)
Query: 16 HKQTMEKIEHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIA 75
H M+KIEH V NG+NMH+A +G GP +LFIHGFPELWYSWR+Q++YL+ RGYRA+A
Sbjct: 4 HHHHMKKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVA 63
Query: 76 PDLRGYGDTDAPP--SVTSYTALHXXXXXXXXXXXXXXHQ--VFLVGHDWGALIAWYFCL 131
PDLRGYGDT P + ++ LH ++ VF+V HDWGALIAW+ CL
Sbjct: 64 PDLRGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCL 123
Query: 132 FRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARL 191
FRPD+VKALVN+SV F RNP + + +A++G+D+YI RFQ PGEIE EFA I +
Sbjct: 124 FRPDKVKALVNLSVHFSKRNPKMNVVEGLKAIFGEDHYISRFQVPGEIEAEFAPIGAKSV 183
Query: 192 MKKFLCLRIAKPLCIPKDTGLSTVPD-PSALPSWLSEEDVNYYASKFNQKGFTGPVNYYR 250
+KK L R P PK GL +PD P AL SWLSEE+++YYA+KF Q GFTG VNYYR
Sbjct: 184 LKKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYR 243
Query: 251 CSDLYVPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGF 310
+ NWEL APWTG Q++VP KFIVG+ DLVY+ G KEYIH+GGF
Sbjct: 244 ALPI--------------NWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGF 289
Query: 311 KKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349
KK VP L+EVVV+EG AHF++QE+ E+ HIY+FI+KF
Sbjct: 290 KKDVPLLEEVVVLEGAAHFVSQERPHEISKHIYDFIQKF 328
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 158/318 (49%), Gaps = 27/318 (8%)
Query: 33 INMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS 92
+ +H +G+GP V HGFPE WYSWR Q+ L+ GYR +A D++GYG++ APP +
Sbjct: 248 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 307
Query: 93 YTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNP 152
Y Q +GHDWG ++ WY LF P+RV+A+ +++ PF P NP
Sbjct: 308 YCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 367
Query: 153 AVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPK--DT 210
+ PL + +A DY + FQEPG E E Q + +R K L + K +
Sbjct: 368 NMSPLESIKANPVFDYQL-YFQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEA 425
Query: 211 G--LSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKE 268
G P+ +L ++EE++ +Y +F + GF GP+N+YR ++
Sbjct: 426 GGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRN--------------MER 471
Query: 269 NWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAH 328
NW+ G +I +P + ++D V + M +++ D ++P+L+ + E H
Sbjct: 472 NWKWACKSLGRKILIPALMVTAEKDFVLVPQ-MSQHMED-----WIPHLKRGHI-EDCGH 524
Query: 329 FINQEKAEEVGAHIYEFI 346
+ +K EV + +++
Sbjct: 525 WTQMDKPTEVNQILIKWL 542
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 158/318 (49%), Gaps = 27/318 (8%)
Query: 33 INMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS 92
+ +H +G+GP V HGFPE WYSWR Q+ L+ GYR +A D++GYG++ APP +
Sbjct: 29 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 88
Query: 93 YTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNP 152
Y Q +GHDWG ++ WY LF P+RV+A+ +++ PF P NP
Sbjct: 89 YCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 148
Query: 153 AVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPK--DT 210
+ PL + +A DY + FQEPG E E Q + +R K L + K +
Sbjct: 149 NMSPLESIKANPVFDYQL-YFQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEA 206
Query: 211 G--LSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKE 268
G P+ +L ++EE++ +Y +F + GF GP+N+YR ++
Sbjct: 207 GGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRN--------------MER 252
Query: 269 NWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAH 328
NW+ G +I +P + ++D V + M +++ D ++P+L+ + E H
Sbjct: 253 NWKWACKSLGRKILIPALMVTAEKDFVLVPQ-MSQHMED-----WIPHLKRGHI-EDCGH 305
Query: 329 FINQEKAEEVGAHIYEFI 346
+ +K EV + +++
Sbjct: 306 WTQMDKPTEVNQILIKWL 323
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 158/318 (49%), Gaps = 27/318 (8%)
Query: 33 INMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS 92
+ +H +G+GP V HGFPE WYSWR Q+ L+ GYR +A D++GYG++ APP +
Sbjct: 44 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 103
Query: 93 YTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNP 152
Y Q +GHDWG ++ WY LF P+RV+A+ +++ PF P NP
Sbjct: 104 YCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANP 163
Query: 153 AVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPK--DT 210
+ PL + +A DY + FQEPG E E Q + +R K L + K +
Sbjct: 164 NMSPLESIKANPVFDYQL-YFQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEA 221
Query: 211 G--LSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKE 268
G P+ +L ++EE++ +Y +F + GF GP+N+YR ++
Sbjct: 222 GGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRN--------------MER 267
Query: 269 NWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAH 328
NW+ G +I +P + ++D V + M +++ D ++P+L+ + E H
Sbjct: 268 NWKWACKSLGRKILIPALMVTAEKDFVLVPQ-MSQHMED-----WIPHLKRGHI-EDCGH 320
Query: 329 FINQEKAEEVGAHIYEFI 346
+ +K EV + +++
Sbjct: 321 WTQMDKPTEVNQILIKWL 338
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 159/323 (49%), Gaps = 32/323 (9%)
Query: 32 GINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVT 91
GI +H +G+GP + HGFPE W+SWR Q+ L+ G+R +A D++GYGD+ +PP +
Sbjct: 245 GIRLHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIE 304
Query: 92 SYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRN 151
Y Q +GHDW ++ W LF P+RV+A+ +++ PF P +
Sbjct: 305 EYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPD 364
Query: 152 PAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIAKP---LCIPK 208
P V P+ R++ +Y + FQEPG E E + + +R K F R + + + K
Sbjct: 365 PDVSPMKVIRSIPVFNYQL-YFQEPGVAEAELEK-NMSRTFKSF--FRASDETGFIAVHK 420
Query: 209 DTGLSTV----PDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAI 264
T + + P+ L +EE++ +Y +F + GF GP+N+YR ++
Sbjct: 421 ATEIGGILVNTPEDPNLSKITTEEEIEFYIQQFKKTGFRGPLNWYRNTE----------- 469
Query: 265 IIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVME 324
NW+ G +I VP + ++D+V + K +K++P+L+ + E
Sbjct: 470 ---RNWKWSCKGLGRKILVPALMVTAEKDIVLRPEMSK------NMEKWIPFLKRGHI-E 519
Query: 325 GVAHFINQEKAEEVGAHIYEFIK 347
H+ EK EV + ++++
Sbjct: 520 DCGHWTQIEKPTEVNQILIKWLQ 542
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 152/368 (41%), Gaps = 67/368 (18%)
Query: 25 HTTVGTNGINMHVASIG----TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 80
H + G +H + GP+V+ +HGFPE WYSWR+Q+ L+ GYR +A D RG
Sbjct: 11 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 70
Query: 81 YGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
YG + +Y Q F+VGHDWGA +AW F PDR +
Sbjct: 71 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGV 130
Query: 141 VNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPG----------------EIEEEF- 183
V +SVPF R P + F DY++ PG EIEE+
Sbjct: 131 VGISVPFAGRGVIGLPGSPFGERRPSDYHL-ELAGPGRVWYQDYFAVQDGIITEIEEDLR 189
Query: 184 --------------------AQIDTARLMKKFLCLRI--AKPLCIPKDTGL-STVPDPSA 220
A +D ++ + + A PLC+ + L P
Sbjct: 190 GWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPET 249
Query: 221 LPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTGVQ 280
+P+W +E D+++Y +F + GF GP+++Y I +W +A G
Sbjct: 250 MPAWFTEADLDFYTGEFERSGFGGPLSFYHN--------------IDNDWHDLADQQGKP 295
Query: 281 IEVPVKFIVGDQDL--VYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEV 338
+ P FI G D+ ++ + ++ + +P + ++ V H+I QE EE
Sbjct: 296 LTPPALFIGGQYDVGTIWGAQAIERA------HEVMPNYRGTHMIADVGHWIQQEAPEET 349
Query: 339 GAHIYEFI 346
+ +F+
Sbjct: 350 NRLLLDFL 357
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 152/368 (41%), Gaps = 67/368 (18%)
Query: 25 HTTVGTNGINMHVASIG----TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 80
H + G +H + GP+V+ +HGFPE WYSWR+Q+ L+ GYR +A D RG
Sbjct: 5 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 64
Query: 81 YGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
YG + +Y Q F+VGHDWGA +AW F PDR +
Sbjct: 65 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGV 124
Query: 141 VNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPG----------------EIEEEF- 183
V +SVPF R P + F DY++ PG EIEE+
Sbjct: 125 VGISVPFAGRGVIGLPGSPFGERRPSDYHL-ELAGPGRVWYQDYFAVQDGIITEIEEDLR 183
Query: 184 --------------------AQIDTARLMKKFLCLRI--AKPLCIPKDTGL-STVPDPSA 220
A +D ++ + + A PLC+ + L P
Sbjct: 184 GWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPET 243
Query: 221 LPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTGVQ 280
+P+W +E D+++Y +F + GF GP+++Y I +W +A G
Sbjct: 244 MPAWFTEADLDFYTGEFERSGFGGPLSFYHN--------------IDNDWHDLADQQGKP 289
Query: 281 IEVPVKFIVGDQDL--VYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEV 338
+ P FI G D+ ++ + ++ + +P + ++ V H+I QE EE
Sbjct: 290 LTPPALFIGGQYDVGTIWGAQAIERA------HEVMPNYRGTHMIADVGHWIQQEAPEET 343
Query: 339 GAHIYEFI 346
+ +F+
Sbjct: 344 NRLLLDFL 351
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%)
Query: 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXX 103
PVVL IHG E +W+ L L+++GYR +APDL G+G + VTSY++L
Sbjct: 27 PVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQID 86
Query: 104 XXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148
+ LVGH GA++A RP ++K L+ + +P P
Sbjct: 87 RVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLP 131
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 27 TVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDA 86
TV G + G+G VLF+HG P Y WRN + Y+ + GYRA+APDL G GD+ A
Sbjct: 13 TVEVEGATIAYVDEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDS-A 71
Query: 87 PPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVP 146
P + H V ++ HDWG++I PDRV A+
Sbjct: 72 KPDIEYRLQDHVAYXDGFIDALGLDDXVLVI-HDWGSVIGXRHARLNPDRVAAVAFXEAL 130
Query: 147 FPPRNP 152
PP P
Sbjct: 131 VPPALP 136
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 24 EHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
E T V T +++ G G +L +HG+P+ W +++ L + + +A DLRGYGD
Sbjct: 6 EQTIVDTTEARINLVKAGHGAPLLLLHGYPQTHVMW-HKIAPLLANNFTVVATDLRGYGD 64
Query: 84 TDAPPSV---TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
+ P SV +Y+ Q ++VGHD GA +A L P RVK L
Sbjct: 65 SSRPASVPHHINYSKRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKL 124
Query: 141 VNMSV 145
+ +
Sbjct: 125 ALLDI 129
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 21 EKIEHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 80
E +H V + +H G GP +L +HG+P W+ W + L+ Y I PDLRG
Sbjct: 7 EDFKHYEVQLPDVKIHYVREGAGPTLLLLHGWPGFWWEWSKVIGPLAEH-YDVIVPDLRG 65
Query: 81 YGDTDAPP--SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV- 137
+GD++ P ++ Y+ + ++VGHD+ A++ F DRV
Sbjct: 66 FGDSEKPDLNDLSKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVI 125
Query: 138 KALVNMSVPFPPRNPAVRPL 157
KA + F P P P+
Sbjct: 126 KAAI-----FDPIQPDFGPV 140
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 76
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149
Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 77 -LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF---- 131
Query: 150 RNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTAR-LMKKFLCLRIAKPLCIPK 208
+RP+ + D+++ E+ EE + AR + F + + L I +
Sbjct: 132 ----IRPIPTW-----DEFHHT------EVAEEQDHAEAARETFQAFRTADVGRELIIDQ 176
Query: 209 DTGLSTVPDPSALPSWLSEEDVNYYASKF 237
+ + V P + L+E ++++Y F
Sbjct: 177 NAFIERV-LPGGVVRPLTEVEMDHYREPF 204
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 76
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149
Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 77 -LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF---- 131
Query: 150 RNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTAR-LMKKFLCLRIAKPLCIPK 208
+RP+ + D+++ E+ EE + AR + F + + L I +
Sbjct: 132 ----IRPIPTW-----DEFHHT------EVAEEQDHAEAARETFQAFRTADVGRELIIDQ 176
Query: 209 DTGLSTVPDPSALPSWLSEEDVNYYASKF 237
+ + V P + L+E ++++Y F
Sbjct: 177 NAFIERV-LPGGVVRPLTEVEMDHYREPF 204
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 26 TTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
T V +G ++ G+G VLF HG+P W Q+ YLSSRGYR IA D RG+G +D
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGAL-IAWYFCLFRPDRVKALVNMS 144
P + Y +V LVG G +A Y RV LV +
Sbjct: 62 QPWTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 145 VPFP-----PRNPAVRPLNNF 160
P P P PL+ F
Sbjct: 120 AVTPIFGQKPDYPQGVPLDVF 140
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 26 TTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
T V +G ++ G+G VLF HG+P W Q+ YLSSRGYR IA D RG+G +D
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGAL-IAWYFCLFRPDRVKALVNMS 144
P + Y +V LVG G +A Y RV LV +
Sbjct: 62 QPWTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 145 VPFP-----PRNPAVRPLNNF 160
P P P PL+ F
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVF 140
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXX 102
PVVLF+HG P + WRN +L L S IAPDL G+G + P +Y
Sbjct: 29 APVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLIGFGQSGKPD--IAYRFFDHVRYL 85
Query: 103 XXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRA 162
+LV DWG +A++ RPD V+ L M +RP+ ++
Sbjct: 86 DAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEF--------IRPMPTWQD 137
Query: 163 VYGDDYYICR-----FQEPGEIE 180
+ D R F+ PGE E
Sbjct: 138 FHQDHAEAARAVFRKFRTPGEGE 160
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 76
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV--PF 147
Y +V LV HDWG+ + +++ P+RVK + M PF
Sbjct: 77 -LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPF 135
Query: 148 P 148
P
Sbjct: 136 P 136
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 76
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV--PF 147
Y +V LV HDWG+ + +++ P+RVK + M PF
Sbjct: 77 -LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPF 135
Query: 148 P 148
P
Sbjct: 136 P 136
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 76
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV--PF 147
Y +V LV HDWG+ + +++ P+RVK + M PF
Sbjct: 77 -LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPF 135
Query: 148 P 148
P
Sbjct: 136 P 136
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 16 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 73
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV--PF 147
Y +V LV HDWG+ + +++ P+RVK + M PF
Sbjct: 74 -LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPF 132
Query: 148 P 148
P
Sbjct: 133 P 133
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 76
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 77 -LDYFFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 76
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 77 -LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 76
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 77 -LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 76
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 77 -LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 32 GINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
G MH +G G VLF+HG P Y WRN + +++ +R IAPDL G G +D P
Sbjct: 16 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSDKPD- 73
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
Y +V LV HDWG+ + +++ P+RVK + M
Sbjct: 74 -LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 127
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 30 TNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
+G+ +H G GP+V+ +HGF + WY W + L+ R + IAPDL G G ++ P
Sbjct: 17 VDGVKLHYVKGGQGPLVMLVHGFGQTWYEWHQLMPELAKR-FTVIAPDLPGLGQSEPPK- 74
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVF-LVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148
T Y+ + F LV HD G + + + LV M P P
Sbjct: 75 -TGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIP 133
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 30 TNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
+G+ +H G GP+V+ +HGF + WY W + L+ R + IAPDL G G ++ P
Sbjct: 17 VDGVKLHYVKGGQGPLVMLVHGFGQTWYEWHQLMPELAKR-FTVIAPDLPGLGQSEPPK- 74
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVF-LVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148
T Y+ + F LV HD G + + + LV M P P
Sbjct: 75 -TGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIP 133
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 26 TTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
T V +G ++ G+G VLF HG+ W Q+ YLSSRGYR IA D RG+G +D
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGAL-IAWYFCLFRPDRVKALVNMS 144
P + Y +V LVG G +A Y RV LV +
Sbjct: 62 QPWTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 145 VPFP-----PRNPAVRPLNNF 160
P P P PL+ F
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVF 140
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 30 TNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS 89
+G+ +H G GP+V+ +HGF + WY W + L+ R + IAPDL G G ++ P
Sbjct: 17 VDGVKLHYVKGGQGPLVMLVHGFGQTWYEWHQLMPELAKR-FTVIAPDLPGLGQSEPPK- 74
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVF-LVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148
T Y+ + F LV HD G + + + LV M P P
Sbjct: 75 -TGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIP 133
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 26 TTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
T V +G ++ G+G VLF HG+ W Q+ YLSSRGYR IA D RG+G +D
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGAL-IAWYFCLFRPDRVKALVNMS 144
P + Y +V LVG G +A Y RV LV +
Sbjct: 62 QPWTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 145 VPFP-----PRNPAVRPLNNF 160
P P P PL+ F
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVF 140
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 26 TTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
T V +G ++ G+G VLF HG+ W Q+ YLSSRGYR IA D RG+G +D
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGAL-IAWYFCLFRPDRVKALVNMS 144
P + Y +V LVG G +A Y RV LV +
Sbjct: 62 QPWTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 145 VPFP-----PRNPAVRPLNNF 160
P P P PL+ F
Sbjct: 120 AVTPLFGQKPDYPQGVPLDVF 140
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXX 102
PVVLF+HG P + WRN +L L S IAPDL G+G + P +Y
Sbjct: 29 APVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLIGFGQSGKPD--IAYRFFDHVRYL 85
Query: 103 XXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 143
+LV DWG +A++ RPD V+ L M
Sbjct: 86 DAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFM 126
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXX 102
PVVLF+HG P + WRN +L L S IAPDL G+G + P +Y
Sbjct: 29 APVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLIGFGQSGKPD--IAYRFFDHVRYL 85
Query: 103 XXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 143
+LV DWG +A++ RPD V+ L M
Sbjct: 86 DAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFM 126
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 24 EHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
++ T+ T+ + VA G+GP +L +HG+P+ +W L+ Y + DLRGYG+
Sbjct: 12 DYLTLHTSAARLRVAVKGSGPPLLLLHGYPQTHLAWHRIAPRLAE-DYSVVLADLRGYGE 70
Query: 84 TDA-PPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVN 142
+ A Y+ + ++GHD GA + + L P V A V+
Sbjct: 71 SRALDEEGADYSKAALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVS 130
Query: 143 MSV 145
++V
Sbjct: 131 LTV 133
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 4/128 (3%)
Query: 21 EKIEHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 80
E E V + ++ G+GP +L +HGFP+ + W L++ Y + DLRG
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWARVAPLLANE-YTVVCADLRG 61
Query: 81 YGDTDAP---PSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 137
YG + P P +Y+ + LVGHD G L PD V
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSV 121
Query: 138 KALVNMSV 145
+L + +
Sbjct: 122 LSLAVLDI 129
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 120/330 (36%), Gaps = 50/330 (15%)
Query: 24 EHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
E + G M GTG +LF HG P Y WRN + + + G R IA DL G GD
Sbjct: 9 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 67
Query: 84 TDA--PPSVTSYT-ALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
+D P Y A H +V LV HDWG+ + + + +RV+ +
Sbjct: 68 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 127
Query: 141 VNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRI 200
M P A P + D + + G EE D +++ L I
Sbjct: 128 AYMEAIAMPIEWADFPEQD------RDLFQAFRSQAG---EELVLQDNV-FVEQVLPGLI 177
Query: 201 AKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTY 260
+P LSE ++ Y F G R L P+
Sbjct: 178 LRP---------------------LSEAEMAAYREPFLAAGEA------RRPTLSWPRQI 210
Query: 261 TMAIIIKENWELMAPWTGVQIEVPV-KFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQE 319
+A + + + G E P+ K + + M++ F + P E
Sbjct: 211 PIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGALTTGRMRD------FCRTWPNQTE 264
Query: 320 VVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349
+ V AHFI ++ +E+GA I F+++
Sbjct: 265 ITV--AGAHFIQEDSPDEIGAAIAAFVRRL 292
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 120/330 (36%), Gaps = 50/330 (15%)
Query: 24 EHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
E + G M GTG +LF HG P Y WRN + + + G R IA DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 84 TDA--PPSVTSYT-ALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
+D P Y A H +V LV HDWG+ + + + +RV+ +
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 128
Query: 141 VNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRI 200
M P A P + D + + G EE D +++ L I
Sbjct: 129 AYMEAIAMPIEWADFPEQD------RDLFQAFRSQAG---EELVLQDNV-FVEQVLPGLI 178
Query: 201 AKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTY 260
+P LSE ++ Y F G R L P+
Sbjct: 179 LRP---------------------LSEAEMAAYREPFLAAGEA------RRPTLSWPRQI 211
Query: 261 TMAIIIKENWELMAPWTGVQIEVPV-KFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQE 319
+A + + + G E P+ K + + M++ F + P E
Sbjct: 212 PIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGALTTGRMRD------FCRTWPNQTE 265
Query: 320 VVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349
+ V AHFI ++ +E+GA I F+++
Sbjct: 266 ITV--AGAHFIQEDSPDEIGAAIAAFVRRL 293
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 120/330 (36%), Gaps = 50/330 (15%)
Query: 24 EHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
E + G M GTG +LF HG P Y WRN + + + G R IA DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 84 TDA--PPSVTSYT-ALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
+D P Y A H +V LV HDWG+ + + + +RV+ +
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 128
Query: 141 VNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRI 200
M P A P + D + + G EE D +++ L I
Sbjct: 129 AYMEAIAMPIEWADFPEQD------RDLFQAFRSQAG---EELVLQDNV-FVEQVLPGLI 178
Query: 201 AKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTY 260
+P LSE ++ Y F G R L P+
Sbjct: 179 LRP---------------------LSEAEMAAYREPFLAAGEA------RRPTLSWPRQI 211
Query: 261 TMAIIIKENWELMAPWTGVQIEVPV-KFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQE 319
+A + + + G E P+ K + + M++ F + P E
Sbjct: 212 PIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGALTTGRMRD------FCRTWPNQTE 265
Query: 320 VVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349
+ V AHFI ++ +E+GA I F+++
Sbjct: 266 ITV--AGAHFIQEDSPDEIGAAIAAFVRRL 293
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 66/330 (20%)
Query: 32 GINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD----AP 87
G M G G ++F HG P Y WRN + +L G R +A DL G G +D +
Sbjct: 19 GKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGASDKLSPSG 77
Query: 88 PSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147
P SY H V LV HDWG+ + + + DRV+ + M
Sbjct: 78 PDRYSYGEQRDFLFALWDALDLGDH-VVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIV 136
Query: 148 PPRN-----PAVRPL-NNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIA 201
P PAVR + FR+ G EP +E +++ L
Sbjct: 137 TPMTWADWPPAVRGVFQGFRSPQG---------EPMALEHNI-------FVERVL----- 175
Query: 202 KPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYT 261
P A+ LS+E++N+Y F G R L P+
Sbjct: 176 ----------------PGAILRQLSDEEMNHYRRPFVNGGED------RRPTLSWPRNLP 213
Query: 262 MAIIIKENWELMAPWTG--VQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQE 319
+ E L+ + + ++P FI + + + +++Y+ + P E
Sbjct: 214 IDGEPAEVVALVNEYRSWLEETDMPKLFINAEPGAIITGR-IRDYV------RSWPNQTE 266
Query: 320 VVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349
+ V GV HF+ ++ EE+GA I +F+++
Sbjct: 267 ITV-PGV-HFVQEDSPEEIGAAIAQFVRRL 294
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 66/330 (20%)
Query: 32 GINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD----AP 87
G M G G ++F HG P Y WRN + +L G R +A DL G G +D +
Sbjct: 17 GKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGASDKLSPSG 75
Query: 88 PSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147
P SY H V LV HDWG+ + + + DRV+ + M
Sbjct: 76 PDRYSYGEQRDFLFALWDALDLGDH-VVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIV 134
Query: 148 PPRN-----PAVRPL-NNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIA 201
P PAVR + FR+ G EP +E +++ L
Sbjct: 135 TPMTWADWPPAVRGVFQGFRSPQG---------EPMALEHNI-------FVERVL----- 173
Query: 202 KPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYT 261
P A+ LS+E++N+Y F G R L P+
Sbjct: 174 ----------------PGAILRQLSDEEMNHYRRPFVNGGED------RRPTLSWPRNLP 211
Query: 262 MAIIIKENWELMAPWTG--VQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQE 319
+ E L+ + + ++P FI + + + +++Y+ + P E
Sbjct: 212 IDGEPAEVVALVNEYRSWLEETDMPKLFINAEPGAIITGR-IRDYV------RSWPNQTE 264
Query: 320 VVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349
+ V GV HF+ ++ EE+GA I +F+++
Sbjct: 265 ITV-PGV-HFVQEDSPEEIGAAIAQFVRRL 292
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 29 GTNGINMHVASIGTGP-----VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
G G+ MH + GP L +HG P + +R L ++ G R +APDL G+G
Sbjct: 29 GFEGLRMHY--VDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGR 86
Query: 84 TDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 143
+D P YT +V LV DWG ++ + RP V L+ M
Sbjct: 87 SDKPTDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVM 146
Query: 144 SV 145
+
Sbjct: 147 NT 148
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 119/330 (36%), Gaps = 50/330 (15%)
Query: 24 EHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
E + G M GTG +LF HG P Y WRN + + + G R IA DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 84 TDA--PPSVTSYT-ALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
+D P Y A H +V LV HDWG+ + + + +RV+ +
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 128
Query: 141 VNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRI 200
M P A P + D + + G EE D +++ L I
Sbjct: 129 AYMEAIAMPIEWADFPEQD------RDLFQAFRSQAG---EELVLQDNV-FVEQVLPGLI 178
Query: 201 AKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTY 260
+P LSE ++ Y F G R L P+
Sbjct: 179 LRP---------------------LSEAEMAAYREPFLAAGEA------RRPTLSWPRQI 211
Query: 261 TMAIIIKENWELMAPWTGVQIEVPV-KFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQE 319
+A + + + G E P+ K + + M++ F + P E
Sbjct: 212 PIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGALTTGRMRD------FCRTWPNQTE 265
Query: 320 VVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349
+ V AHFI ++ +E+GA I F+ +
Sbjct: 266 ITV--AGAHFIQEDSPDEIGAAIAAFVXRL 293
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Query: 18 QTMEKIEHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPD 77
Q + + V + IN + + V+F+HG Y WR+ + ++ R I PD
Sbjct: 18 QWWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPD 76
Query: 78 LRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 137
L G G + + + H ++ VGHDWGA +A+++ DR+
Sbjct: 77 LIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRI 136
Query: 138 KALVNMS 144
KA+V+M
Sbjct: 137 KAIVHME 143
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Query: 18 QTMEKIEHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPD 77
Q + + V + IN + + V+F+HG Y WR+ + ++ R I PD
Sbjct: 18 QWWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPD 76
Query: 78 LRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 137
L G G + + + H ++ VGHDWGA +A+++ DR+
Sbjct: 77 LIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRI 136
Query: 138 KALVNMS 144
KA+V+M
Sbjct: 137 KAIVHME 143
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Query: 18 QTMEKIEHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPD 77
Q + + V + IN + + V+F+HG Y WR+ + ++ R I PD
Sbjct: 19 QWWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPD 77
Query: 78 LRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 137
L G G + + + H ++ VGHDWGA +A+++ DR+
Sbjct: 78 LIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRI 137
Query: 138 KALVNMS 144
KA+V+M
Sbjct: 138 KAIVHME 144
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 29 GTNGINMHVASIGTGP---VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
G G+ H G V L +HG P Y +R + + G R IAPD G+G +D
Sbjct: 30 GYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD 89
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145
P YT + LV DWG + + P R K L+ M+
Sbjct: 90 KPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 33 INMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS 92
IN + + V+F+HG Y WR+ + ++ R I PDL G G + + +
Sbjct: 34 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSY 92
Query: 93 YTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
H ++ VGHDWGA +A+++ DR+KA+V+M
Sbjct: 93 RLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHME 144
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 29 GTNGINMHVASIGTGP---VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
G G+ H G V L +HG P Y +R + + G R IAPD G+G +D
Sbjct: 30 GYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD 89
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145
P YT + LV DWG + + P R K L+ M+
Sbjct: 90 KPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 29 GTNGINMHVASIGTGP---VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
G G+ H G V L +HG P Y +R + + G R IAPD G+G +D
Sbjct: 30 GYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD 89
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145
P YT + LV DWG + + P R K L+ M+
Sbjct: 90 KPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 29 GTNGINMHVASIGTGP---VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
G G+ H G V L +HG P Y +R + + G R IAPD G+G +D
Sbjct: 30 GYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD 89
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145
P YT + LV DWG + + P R K L+ M+
Sbjct: 90 KPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 29 GTNGINMHVASIGTGP---VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
G G+ H G V L +HG P Y +R + + G R IAPD G+G +D
Sbjct: 30 GYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD 89
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145
P YT + LV DWG + + P R K L+ M+
Sbjct: 90 KPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 21 EKIEHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 80
E E V + ++ G+GP +L +HGFP+ + W L++ Y + DLRG
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWARVAPLLANE-YTVVCADLRG 61
Query: 81 YGDTDAP---PSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 137
YG + P P +Y+ + LVGH G L PD V
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSV 121
Query: 138 KALVNMSV 145
+L + +
Sbjct: 122 LSLAVLDI 129
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 9/125 (7%)
Query: 29 GTNGINMHVASI-----GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
G+ IN I G GP +L +HGFP+ W L+ R ++ I DL GYG
Sbjct: 14 GSEWINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGW 72
Query: 84 TDAPPSV---TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
+D P S T YT L GHD GA +++ L P R+ L
Sbjct: 73 SDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKL 132
Query: 141 VNMSV 145
+ +
Sbjct: 133 AVLDI 137
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 31 NGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAP 87
+G ++ G+G ++F HG+P SW +Q+++L+++GYR IA D RG+G + P
Sbjct: 7 DGTQIYYKDWGSGQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQP 63
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 9/125 (7%)
Query: 29 GTNGINMHVASI-----GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
G+ IN I G GP +L +HGFP+ W L+ R ++ I DL GYG
Sbjct: 14 GSEWINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGW 72
Query: 84 TDAPPSV---TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
+D P S T YT L GHD GA +++ L P R+ L
Sbjct: 73 SDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKL 132
Query: 141 VNMSV 145
+ +
Sbjct: 133 AVLDI 137
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 60/150 (40%), Gaps = 15/150 (10%)
Query: 26 TTVGTNGINMHVASIG--TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
T ++G N+ G G V+F HG+P W NQ+L+ S GYR IA D RG+G
Sbjct: 2 TVTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGR 61
Query: 84 TDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHD-WGALIAWYFCLFRPDRVKALVN 142
+D P T + +GH G +A Y P RV V
Sbjct: 62 SDQPS--TGHDMDTYAADVAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVL 119
Query: 143 MSVPFPP------RNPAVRPL---NNFRAV 163
+S PP NP PL + FRA
Sbjct: 120 VSA-VPPVMVKSDTNPDGLPLEVFDEFRAA 148
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 27 TVG---TNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
TVG + I+++ GTG V+ IHGFP +SW Q L GYR I D RG+G
Sbjct: 5 TVGQENSTSIDLYYEDHGTGVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQ 64
Query: 84 TDAPPSVTSY 93
+ P + Y
Sbjct: 65 SSQPTTGYDY 74
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Query: 29 GTNGINMHVASIGTGP---VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85
G G+ H G V L +HG P Y +R + + G R IAPD G+G +D
Sbjct: 30 GYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD 89
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145
P YT + LV WG + + P R K L+ M+
Sbjct: 90 KPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 27 TVG---TNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
TVG + I+++ GTG V+ IHGFP +SW Q L GYR I D RG+G
Sbjct: 4 TVGQENSTSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQ 63
Query: 84 TDAPPSVTSY 93
+ P + Y
Sbjct: 64 SSQPTTGYDY 73
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 27 TVG---TNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
TVG + I+++ GTG V+ IHGFP +SW Q L GYR I D RG+G
Sbjct: 4 TVGQENSTSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQ 63
Query: 84 TDAPPSVTSY 93
+ P + Y
Sbjct: 64 SSQPTTGYDY 73
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 9/125 (7%)
Query: 29 GTNGINMHVASI-----GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
G+ IN I G GP +L +HGFP+ W L+ R ++ I DL GYG
Sbjct: 14 GSEWINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGW 72
Query: 84 TDAPPSV---TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
+D P S T YT L GH+ GA +++ L P R+ L
Sbjct: 73 SDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKL 132
Query: 141 VNMSV 145
+ +
Sbjct: 133 AVLDI 137
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 9/125 (7%)
Query: 29 GTNGINMHVASI-----GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
G+ IN I G GP +L +HGFP+ W L+ R ++ I DL GYG
Sbjct: 14 GSEWINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAER-FKVIVADLPGYGW 72
Query: 84 TDAPPSV---TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140
+D P S T YT L GH GA +++ L P R+ L
Sbjct: 73 SDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKL 132
Query: 141 VNMSV 145
+ +
Sbjct: 133 AVLDI 137
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 27 TVG---TNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
TVG + I+++ G G V+ IHGFP +SW Q L GYR I D RG+G
Sbjct: 4 TVGQENSTSIDLYYEDHGAGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQ 63
Query: 84 TDAPPSVTSY 93
+ P + Y
Sbjct: 64 SSQPTTGYDY 73
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 27 TVGTNG---INMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83
TVGT I ++ GTG V+ IHG+P SW Q+ L GYR I D RG+G
Sbjct: 8 TVGTENQAPIEIYYEDHGTGKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGK 67
Query: 84 TDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHD-WGALIAWYFCLFRPDRVKALV 141
+ P Y V LVG G +A Y + DR++ +V
Sbjct: 68 SSQPWEGYEYDTF--TSDLHQLLEQLELQNVTLVGFSXGGGEVARYISTYGTDRIEKVV 124
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 33 INMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTS 92
I ++V G+GP+ LF HG + + LS R + IA D RG+G +D P T
Sbjct: 58 ITLNVREKGSGPLXLFFHGITSNSAVFEPLXIRLSDR-FTTIAVDQRGHGLSDKPE--TG 114
Query: 93 YTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149
Y A LVGH GA + PD V+++V ++ F P
Sbjct: 115 YEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVV--AIDFTP 169
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 31 NGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG 82
+G+ + G G V+FIHG+P +W++QL + GYR IA D RG+G
Sbjct: 7 DGVEIFYKDWGQGRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHG 58
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In
Complex With 3a,4,7,7a-Tetrahydro-Benzo [1,3]
Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In
Complex With 3a,4,7,7a-Tetrahydro-Benzo [1,3]
Dioxol-2-One
Length = 279
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 33 INMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDT 84
I ++ G+G V+ IHG+P +SW Q L ++GYR I D RG+G +
Sbjct: 13 IELYYEDQGSGQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGS 64
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG 82
PV+ F HG+P W QLL+ + GYR +A D RG+G
Sbjct: 23 PVIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHG 61
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 32 GINMHVASIGTGPVVLFIHGFP---ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP 88
G+ + +G G V+ IHG + +WR + LS + YR IAPD+ G+G TD P
Sbjct: 14 GVLTNYHDVGEGQPVILIHGSGPGVSAYANWRLTIPALS-KFYRVIAPDMVGFGFTDRPE 72
Query: 89 SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 143
+ +Y+ + +VG+ +G +A L +RV +V M
Sbjct: 73 NY-NYSKDSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLM 126
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG 82
V+ F HG+P W QLL+ ++G+R +A D RG+G
Sbjct: 28 VIHFHHGWPLSSDDWDAQLLFFVNKGFRVVAHDRRGHG 65
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 32 GINMHVASIGTGPVVLFIHGFP---ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP 88
G+ + +G G V+ IHG + +WR + LS + YR IAPD+ G+G TD P
Sbjct: 14 GVLTNYHDVGEGQPVILIHGSGPGVSAYANWRLTIPALS-KFYRVIAPDMVGFGFTDRPE 72
Query: 89 SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145
+ +Y+ + +VG+ +G +A L +RV +V M
Sbjct: 73 NY-NYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGA 128
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 29 GTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTD 85
G + N+H G G V+ +HG W N + GYR I D G+ +D
Sbjct: 19 GFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSD 78
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
A + L + LVG+ G A F L PDR+ L+ M
Sbjct: 79 AV-VMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 29 GTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTD 85
G + N+H G G V+ +HG W N + GYR I D G+ +D
Sbjct: 19 GFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSD 78
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
A + L + LVG+ G A F L PDR+ L+ M
Sbjct: 79 AV-VMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 33 INMHVASIGTGPVVLFIHGFPELWYSWR-NQLLYLSSRGYRAIAPDLRGYGDTDAPPSVT 91
IN+ GTG V+FI G +W +Q+ + GYR I D RG G T+ T
Sbjct: 33 INLAYDDNGTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAEGFT 92
Query: 92 SYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145
+ T + +VG GA IA + P+ V + V M+
Sbjct: 93 TQTMVADTAALIETLDIAPAR---VVGVSMGAFIAQELMVVAPELVSSAVLMAT 143
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 29 GTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTD 85
G + N+H G G V+ +HG W N + GYR I D G+ +D
Sbjct: 19 GFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSD 78
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
A + L + LVG+ G A F L PDR+ L+ M
Sbjct: 79 A-VVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 29 GTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTD 85
G + N+H G G V+ +HG W N + GYR I D G+ +D
Sbjct: 19 GFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSD 78
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
A + L + LVG+ G A F L PDR+ L+ M
Sbjct: 79 A-VVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 29 GTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTD 85
G + N+H G G V+ +HG W N + GYR I D G+ +D
Sbjct: 19 GFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSD 78
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
A + L + LVG+ G A F L PDR+ L+ M
Sbjct: 79 A-VVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 29 GTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLS---SRGYRAIAPDLRGYGDTD 85
G + N+H G G V+ +HG W N + GYR I D G+ +D
Sbjct: 16 GFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSD 75
Query: 86 APPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
A + L + LVG+ G A F L PDR+ L+ M
Sbjct: 76 A-VVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 133
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 42 TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXX 101
G +FIHG P S ++ L+ R Y+ + D RG G + S+ + T H
Sbjct: 36 NGKPAVFIHGGPGGGISPHHRQLFDPER-YKVLLFDQRGCGRSRPHASLDNNTTWHLVAD 94
Query: 102 XXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV 141
Q + G WG+ +A + P+RV +V
Sbjct: 95 IERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEMV 134
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 51/137 (37%), Gaps = 9/137 (6%)
Query: 15 KHKQTMEKIEHTTV----GTNGINMHVASIGTGPVVLFIHGFPELWY---SWRNQLLYLS 67
K +Q EK E V G+ G G V+ IHG +WRN + L+
Sbjct: 4 KAEQISEKSERAYVERFVNAGGVETRYLEAGKGQPVILIHGGGAGAESEGNWRNVIPILA 63
Query: 68 SRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAW 127
R YR IA D+ G+G T A P + +V +VG+ G
Sbjct: 64 -RHYRVIAMDMLGFGKT-AKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGGATGL 121
Query: 128 YFCLFRPDRVKALVNMS 144
+ + V ALV M
Sbjct: 122 GVSVLHSELVNALVLMG 138
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 18 QTMEKIE-HTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSR-GYRAIA 75
++ME +E G + ++ S GPV+L +HG SW + SR R +A
Sbjct: 13 ESMEDVEVENETGKDTFRVY-KSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVA 71
Query: 76 PDLRGYGDTDA--PPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIA 126
DLR +G+T P +++ T + L+GH G IA
Sbjct: 72 LDLRSHGETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIA 124
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Query: 41 GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXX 100
G +L HG +W + L+ GYR IA D G+ + + P+ Y+
Sbjct: 44 ANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKS-SKPAHYQYSFQQLAA 102
Query: 101 XXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV 141
+ ++GH G +A + L P +V+ LV
Sbjct: 103 NTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLV 143
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 18 QTMEKIE-HTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSR-GYRAIA 75
++ME +E G + ++ S GPV+L +HG SW + SR R +A
Sbjct: 17 ESMEDVEVENETGKDTFRVY-KSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVA 75
Query: 76 PDLRGYGDTDA--PPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIA 126
DLR +G+T P +++ T + L+GH G IA
Sbjct: 76 LDLRSHGETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHAMGGAIA 128
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 117 VGHDWGALIAWYFCLFRPDRVKALVNMSVP--FPPRN--PAVRP--LNNFRAVYGDDYY- 169
+G G L+A L P+RV+ALV ++ F R+ P ++P L F+ DD+
Sbjct: 79 LGWALGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQR 138
Query: 170 -ICRFQEPGEIEEEFAQIDTARLMKKFLCL 198
+ RF + E A+ D L K L L
Sbjct: 139 TVERFLALQTMGTETARQDARALKKTVLAL 168
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 41 GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG------DTDAPPSVTSYT 94
G+ P V+F+HG + ++W ++ L G A+A DL G+G D + P + S T
Sbjct: 79 GSAPRVIFLHGGGQNAHTWDTVIVGL---GEPALAVDLPGHGHSAWREDGNYSPQLNSET 135
Query: 95 ALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145
F+VG G L A PD V LV + V
Sbjct: 136 -------LAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDV 179
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 33 INMHVASIGTGPVVLFIHGFPELWYSWRN--QLLYLSSRGYRAIAPDLRGYGDTDAPPSV 90
++ H A +G V+ +HG SW N + + + +R + +A D GYG +D
Sbjct: 46 LHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEH 105
Query: 91 TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
+ + +V LVG+ G A F L P R LV M
Sbjct: 106 GQFNR-YAAMALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMG 158
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 117 VGHDWGALIAWYFCLFRPDRVKALVNMSVP--FPPRN--PAVRP--LNNFRAVYGDDYY- 169
+G G L+A L P+RV+ALV ++ F R+ P ++P L F+ DD
Sbjct: 79 LGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQR 138
Query: 170 -ICRFQEPGEIEEEFAQIDTARLMKKFLCL 198
+ RF E A+ D L K L L
Sbjct: 139 TVERFLALQTXGTETARQDARALKKTVLAL 168
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 33 INMHVASIGTGP-VVLFIHGF---PELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP 88
+ +H G G V+ +HG W ++ + L GYR I D G+G +D+
Sbjct: 25 LRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVV 84
Query: 89 SVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
+ S + L+ ++ L+G+ G + F L P+RV LV M
Sbjct: 85 NSGSRSDLNARILKSVVDQLDIA-KIHLLGNSMGGHSSVAFTLKWPERVGKLVLMG 139
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 33 INMHVASIGTGPVVLFIHGFPELWYSWRN--QLLYLSSRGYRAIAPDLRGYGDTDAPPSV 90
++ H A +G V+ +HG SW N + + + +R + +A D GYG +D
Sbjct: 26 LHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEH 85
Query: 91 TSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
+ + +V LVG+ G A F L P R LV M
Sbjct: 86 GQFNR-YAAMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMG 138
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 46 VLFIHGFP---------ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTAL 96
++ +HG E WY + L RG +L G+ D P
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDL---QQRGATVYVANLSGFQSDDGPNG----RGE 63
Query: 97 HXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVP 146
+V LVGH G L + Y PD V ++ + P
Sbjct: 64 QLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTP 113
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 28 VGTNGINMHVASI-----GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG 82
G G +H I G P ++ HG+ W ++L Y+++ G+ +A D+RG G
Sbjct: 88 TGVRGARIHAKYIKPKTEGKHPALIRFHGYSSNSGDWNDKLNYVAA-GFTVVAMDVRGQG 146
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 46 VLFIHGFP---------ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTAL 96
++ +HG E WY + L RG +L G+ D P
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDL---QQRGATVYVANLSGFQSDDGPNG----RGE 63
Query: 97 HXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVP 146
+V LVGH G L + Y PD V ++ + P
Sbjct: 64 QLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTP 113
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 34 NMHVASIGTGPVVLFIHGFPELWYSWRNQLLY---LSSRG-YRAIAPDLRGYGDTDAPPS 89
N+ SIG+G ++F+HG L ++ L+ LS+ G Y+ I DL G G++D
Sbjct: 12 NISYFSIGSGTPIIFLHG---LSLDKQSTCLFFEPLSNVGQYQRIYLDLPGXGNSDPISP 68
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 137
TS L + L GH +G +A D+
Sbjct: 69 STSDNVLE--TLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQT 114
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 34 NMHVASIGTGPVVLFIHGFPELWYSWRNQLLY---LSSRG-YRAIAPDLRGYGDTDAPPS 89
N+ SIG+G ++F+HG L ++ L+ LS+ G Y+ I DL G G++D
Sbjct: 12 NISYFSIGSGTPIIFLHG---LSLDKQSTXLFFEPLSNVGQYQRIYLDLPGXGNSDPISP 68
Query: 90 VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRV 137
TS L + L GH +G +A D+
Sbjct: 69 STSDNVLE--TLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQT 114
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXX 103
P++ + + W QL L+ R +R + D RG+G + PP YT
Sbjct: 28 PLLALSNSIGTTLHXWDAQLPALT-RHFRVLRYDARGHGASSVPPG--PYTLARLGEDVL 84
Query: 104 XXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV 141
+ +G G ++ + L P R++ LV
Sbjct: 85 ELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLV 122
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 2/108 (1%)
Query: 43 GPV-VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXX 101
GPV VL +HGF +S R + GY P L+G+G T++
Sbjct: 39 GPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVE 98
Query: 102 XXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL-VNMSVPFP 148
+F+ G G + Y PD + +N +V P
Sbjct: 99 EGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIP 146
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 46 VLFIHGFPELWYSWRN--QLLYLSSRGYRAIAPDLRGYGDT 84
VL +HG +W+N L L+ GYRA+A DL G G +
Sbjct: 35 VLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHS 75
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 39 SIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG-DTDAPPSVTSYT 94
S G G +L IHG + QL + +R IAPDL G+G TDA SY+
Sbjct: 20 SEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 39 SIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG-DTDAPPSVTSYT 94
S G G +L IHG + QL + +R IAPDL G+G TDA SY+
Sbjct: 20 SEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 39 SIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG-DTDAPPSVTSYT 94
S G G +L IHG + QL + +R IAPDL G+G TDA SY+
Sbjct: 20 SEGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVT-SYTALHXXXX 101
PVV+ I G W QL L Y+ + D RG G+ P ++ Y+
Sbjct: 15 APVVVLISGLGGSGSYWLPQLAVLEQE-YQVVCYDQRGTGNN--PDTLAEDYSIAQXAAE 71
Query: 102 XXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144
+VGH GAL+ L P V L++++
Sbjct: 72 LHQALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISVN 114
>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
Length = 646
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 26 TTVGTNGINMHVASIGTGPVVLFIHGFPELWY 57
TV NG+ ++ G GP+ F+H ++ +
Sbjct: 518 ATVKINGVETEISGSGNGPLAAFVHALADVGF 549
>pdb|1SR9|A Chain A, Crystal Structure Of Leua From Mycobacterium Tuberculosis
pdb|1SR9|B Chain B, Crystal Structure Of Leua From Mycobacterium Tuberculosis
Length = 644
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 26 TTVGTNGINMHVASIGTGPVVLFIHGFPELWY 57
TV NG+ ++ G GP+ F+H ++ +
Sbjct: 516 ATVKINGVETEISGSGNGPLAAFVHALADVGF 547
>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
Length = 644
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 26 TTVGTNGINMHVASIGTGPVVLFIHGFPELWY 57
TV NG+ ++ G GP+ F+H ++ +
Sbjct: 516 ATVKINGVETEISGSGNGPLAAFVHALADVGF 547
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 10/157 (6%)
Query: 18 QTMEKIEHT-TVGTNGINMHVASIGTGPVVLFIHGF---PELWYSWRNQLLYLSSRGYRA 73
+T+E IE GT + VA P V+ +HG +WR + L+ +
Sbjct: 3 KTVEIIEKRFPSGTLASHALVAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFV 61
Query: 74 IAPDLRGYGDTDAPPS----VTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYF 129
+APDL G+G ++ P + + S+ + + +VG+ G +
Sbjct: 62 VAPDLIGFGQSEYPETYPGHIMSWVGMR-VEQILGLMNHFGIEKSHIVGNSMGGAVTLQL 120
Query: 130 CLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGD 166
+ P+R + M P N L A Y D
Sbjct: 121 VVEAPERFDKVALMGSVGAPMNARPPELARLLAFYAD 157
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 249 YRCSDLYVPKTYTMAIIIKENWELMAPWTG--VQIEVPVKFIVGDQDLVYNNKG 300
Y SD++VP+++ + I +E W + W G + ++G +D+V + +G
Sbjct: 102 YATSDIHVPESFLLFPISREGWSKESNWXGYVAVTDDQGTALLGRRDIVVSWRG 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,394,764
Number of Sequences: 62578
Number of extensions: 492007
Number of successful extensions: 1109
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 137
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)