Query 048209
Match_columns 349
No_of_seqs 264 out of 1274
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 07:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4178 Soluble epoxide hydrol 100.0 2.1E-46 4.6E-51 292.7 23.3 309 10-348 9-319 (322)
2 PLN02824 hydrolase, alpha/beta 100.0 1.8E-37 3.8E-42 256.5 23.5 282 22-349 7-294 (294)
3 PRK03592 haloalkane dehalogena 100.0 8.2E-37 1.8E-41 252.6 25.6 282 22-348 6-288 (295)
4 PRK00870 haloalkane dehalogena 100.0 1.5E-36 3.2E-41 251.6 25.2 273 23-349 19-301 (302)
5 PLN02679 hydrolase, alpha/beta 100.0 5.9E-36 1.3E-40 252.4 24.7 284 25-348 63-356 (360)
6 TIGR02240 PHA_depoly_arom poly 100.0 2.5E-35 5.4E-40 241.2 19.7 259 25-348 4-265 (276)
7 PRK03204 haloalkane dehalogena 100.0 4.6E-35 9.9E-40 239.9 18.7 123 23-147 14-136 (286)
8 PLN02578 hydrolase 100.0 7.6E-34 1.6E-38 239.5 21.2 121 25-148 68-188 (354)
9 PLN03087 BODYGUARD 1 domain co 100.0 5.8E-34 1.3E-38 242.9 20.3 126 23-149 176-311 (481)
10 TIGR03343 biphenyl_bphD 2-hydr 100.0 5.9E-34 1.3E-38 234.6 19.2 260 32-348 19-282 (282)
11 PLN02965 Probable pheophorbida 100.0 8.9E-34 1.9E-38 229.2 19.7 244 45-348 5-252 (255)
12 TIGR03056 bchO_mg_che_rel puta 100.0 1.1E-32 2.3E-37 226.8 22.5 266 25-347 8-278 (278)
13 PRK10349 carboxylesterase BioH 100.0 5.5E-33 1.2E-37 225.2 18.2 252 34-348 3-255 (256)
14 PLN02385 hydrolase; alpha/beta 100.0 4.1E-32 8.9E-37 229.0 23.2 125 23-148 62-198 (349)
15 PRK06489 hypothetical protein; 100.0 8.7E-33 1.9E-37 233.8 18.3 119 29-147 46-189 (360)
16 PLN03084 alpha/beta hydrolase 100.0 4.7E-32 1E-36 227.2 22.3 271 25-348 107-383 (383)
17 PRK10749 lysophospholipase L2; 100.0 1.6E-31 3.4E-36 223.4 24.3 126 23-148 31-167 (330)
18 PRK10673 acyl-CoA esterase; Pr 100.0 1.3E-31 2.9E-36 217.3 20.1 239 43-349 16-255 (255)
19 PHA02857 monoglyceride lipase; 100.0 7.5E-31 1.6E-35 215.1 22.1 257 26-349 4-273 (276)
20 PRK11126 2-succinyl-6-hydroxy- 100.0 2.1E-31 4.5E-36 214.4 17.5 100 43-147 2-102 (242)
21 TIGR03611 RutD pyrimidine util 100.0 4E-31 8.7E-36 214.9 18.8 250 35-348 1-257 (257)
22 PRK08775 homoserine O-acetyltr 100.0 1.7E-31 3.6E-36 224.6 15.9 122 23-148 36-174 (343)
23 PLN02298 hydrolase, alpha/beta 100.0 2.7E-30 5.9E-35 216.8 22.9 124 24-148 34-170 (330)
24 PLN02211 methyl indole-3-aceta 100.0 9E-31 2E-35 212.4 19.3 118 29-147 3-122 (273)
25 TIGR02427 protocat_pcaD 3-oxoa 100.0 3.1E-31 6.7E-36 214.7 14.2 247 35-347 2-251 (251)
26 KOG4409 Predicted hydrolase/ac 100.0 2.6E-30 5.5E-35 203.2 18.0 109 43-152 90-200 (365)
27 PRK07581 hypothetical protein; 100.0 7.3E-31 1.6E-35 221.0 15.8 120 29-148 22-160 (339)
28 KOG1454 Predicted hydrolase/ac 100.0 1E-30 2.2E-35 214.4 16.1 257 42-349 57-324 (326)
29 TIGR03695 menH_SHCHC 2-succiny 100.0 3.3E-30 7.2E-35 208.5 18.2 105 43-148 1-106 (251)
30 TIGR01738 bioH putative pimelo 100.0 2.1E-30 4.5E-35 209.1 16.1 244 41-346 1-245 (245)
31 TIGR01392 homoserO_Ac_trn homo 100.0 1.7E-30 3.7E-35 219.2 15.7 122 28-149 11-164 (351)
32 PF12697 Abhydrolase_6: Alpha/ 100.0 5.9E-31 1.3E-35 209.8 11.9 102 46-148 1-102 (228)
33 TIGR01250 pro_imino_pep_2 prol 100.0 4.2E-29 9.2E-34 206.5 20.0 122 26-147 5-131 (288)
34 COG2267 PldB Lysophospholipase 100.0 1.8E-28 3.9E-33 199.3 21.4 271 22-349 9-294 (298)
35 PRK00175 metX homoserine O-ace 100.0 5.8E-30 1.3E-34 217.4 13.2 121 28-148 28-183 (379)
36 PLN02894 hydrolase, alpha/beta 100.0 3.7E-28 8E-33 207.0 23.8 106 42-149 104-213 (402)
37 PRK14875 acetoin dehydrogenase 100.0 1.3E-28 2.7E-33 210.8 20.5 120 25-147 111-232 (371)
38 PLN02652 hydrolase; alpha/beta 100.0 1.2E-27 2.6E-32 202.1 22.8 117 30-148 118-246 (395)
39 KOG1455 Lysophospholipase [Lip 100.0 5.2E-28 1.1E-32 186.7 18.6 268 22-349 27-312 (313)
40 COG1647 Esterase/lipase [Gener 100.0 1.9E-28 4.2E-33 179.6 14.1 225 43-348 15-243 (243)
41 TIGR01249 pro_imino_pep_1 prol 100.0 2.6E-27 5.6E-32 196.3 20.0 122 26-148 7-131 (306)
42 PRK05855 short chain dehydroge 100.0 3.1E-27 6.7E-32 214.3 21.1 121 24-145 4-129 (582)
43 PLN02980 2-oxoglutarate decarb 100.0 1.9E-27 4.2E-32 231.7 19.7 112 35-147 1360-1480(1655)
44 KOG2984 Predicted hydrolase [G 100.0 1.4E-27 3.1E-32 171.8 13.2 249 23-348 21-275 (277)
45 PLN02511 hydrolase 99.9 1.3E-27 2.9E-32 202.8 12.8 119 28-148 77-211 (388)
46 PRK06765 homoserine O-acetyltr 99.9 1E-26 2.3E-31 195.5 17.5 119 31-149 39-198 (389)
47 KOG2382 Predicted alpha/beta h 99.9 6.6E-26 1.4E-30 178.2 17.2 254 43-349 52-313 (315)
48 TIGR01607 PST-A Plasmodium sub 99.9 2.7E-25 5.9E-30 185.1 18.2 121 28-148 3-186 (332)
49 PRK05077 frsA fermentation/res 99.9 1.8E-24 3.9E-29 184.4 20.1 233 25-349 170-412 (414)
50 PRK10985 putative hydrolase; P 99.9 3.6E-24 7.7E-29 178.6 17.9 106 43-149 58-170 (324)
51 PLN02872 triacylglycerol lipas 99.9 1.9E-24 4.1E-29 181.8 16.2 301 23-349 45-389 (395)
52 PRK13604 luxD acyl transferase 99.9 4.4E-24 9.4E-29 170.1 15.0 123 23-149 10-143 (307)
53 TIGR01838 PHA_synth_I poly(R)- 99.9 2.9E-24 6.2E-29 185.5 15.1 257 43-335 188-461 (532)
54 TIGR03100 hydr1_PEP hydrolase, 99.9 4.9E-23 1.1E-27 167.5 21.2 117 27-148 6-135 (274)
55 TIGR01836 PHA_synth_III_C poly 99.9 7.4E-23 1.6E-27 172.7 17.1 119 27-150 42-174 (350)
56 PRK11071 esterase YqiA; Provis 99.9 1.5E-22 3.3E-27 154.5 15.5 89 44-148 2-94 (190)
57 PRK10566 esterase; Provisional 99.9 3.1E-22 6.7E-27 161.6 16.0 114 31-144 10-139 (249)
58 PF00561 Abhydrolase_1: alpha/ 99.9 7E-23 1.5E-27 163.6 8.7 77 71-147 1-79 (230)
59 KOG2564 Predicted acetyltransf 99.9 9.9E-22 2.2E-26 149.3 13.3 119 26-146 51-181 (343)
60 PF12695 Abhydrolase_5: Alpha/ 99.9 3.9E-21 8.5E-26 141.8 12.5 93 45-145 1-93 (145)
61 PRK07868 acyl-CoA synthetase; 99.9 1.5E-20 3.2E-25 178.2 17.4 272 42-349 66-361 (994)
62 COG2021 MET2 Homoserine acetyl 99.9 3.8E-20 8.3E-25 147.9 15.5 290 31-348 34-367 (368)
63 COG0596 MhpC Predicted hydrola 99.8 5E-19 1.1E-23 144.6 21.9 116 29-148 6-124 (282)
64 KOG4667 Predicted esterase [Li 99.8 3.5E-19 7.5E-24 130.3 16.5 208 39-332 29-242 (269)
65 PRK11460 putative hydrolase; P 99.8 4.6E-19 1E-23 140.1 16.8 177 43-347 16-210 (232)
66 TIGR03101 hydr2_PEP hydrolase, 99.8 3.4E-19 7.3E-24 141.8 15.4 104 43-148 25-135 (266)
67 COG3208 GrsT Predicted thioest 99.8 2.7E-19 5.9E-24 135.1 12.0 223 43-347 7-234 (244)
68 PF06342 DUF1057: Alpha/beta h 99.8 5E-18 1.1E-22 130.8 18.1 110 44-156 36-146 (297)
69 COG0429 Predicted hydrolase of 99.8 1E-18 2.2E-23 137.5 14.2 243 43-347 75-338 (345)
70 KOG1552 Predicted alpha/beta h 99.8 5E-18 1.1E-22 129.1 17.5 101 43-147 60-163 (258)
71 PF00326 Peptidase_S9: Prolyl 99.8 2.8E-18 6E-23 134.8 15.5 195 59-349 3-209 (213)
72 COG1506 DAP2 Dipeptidyl aminop 99.8 4.5E-18 9.8E-23 153.0 17.8 234 20-349 362-616 (620)
73 PLN00021 chlorophyllase 99.8 6.6E-18 1.4E-22 138.2 16.7 106 41-148 50-167 (313)
74 PLN02442 S-formylglutathione h 99.8 1.3E-17 2.8E-22 136.0 18.0 119 31-149 28-180 (283)
75 TIGR02821 fghA_ester_D S-formy 99.8 5.1E-17 1.1E-21 132.3 21.3 107 43-149 42-175 (275)
76 KOG4391 Predicted alpha/beta h 99.8 9.7E-19 2.1E-23 128.1 8.0 121 23-148 55-185 (300)
77 TIGR01839 PHA_synth_II poly(R) 99.8 3.5E-18 7.5E-23 146.2 12.6 250 43-330 215-482 (560)
78 KOG1838 Alpha/beta hydrolase [ 99.8 7.9E-17 1.7E-21 131.8 18.6 104 43-148 125-236 (409)
79 KOG2565 Predicted hydrolases o 99.8 1.1E-17 2.3E-22 132.6 13.0 135 12-147 113-264 (469)
80 PF03096 Ndr: Ndr family; Int 99.7 5E-17 1.1E-21 127.1 13.0 263 27-348 3-278 (283)
81 KOG2931 Differentiation-relate 99.7 8.7E-16 1.9E-20 118.3 19.4 270 23-348 22-305 (326)
82 PF01738 DLH: Dienelactone hyd 99.7 6.1E-17 1.3E-21 127.6 13.0 182 42-349 13-217 (218)
83 PF02230 Abhydrolase_2: Phosph 99.7 3.3E-16 7.1E-21 123.0 14.5 107 43-149 14-142 (216)
84 TIGR01849 PHB_depoly_PhaZ poly 99.7 4.9E-16 1.1E-20 129.5 16.1 104 44-151 103-212 (406)
85 PRK10162 acetyl esterase; Prov 99.7 4.6E-15 1E-19 123.2 21.7 105 43-149 81-197 (318)
86 PF05448 AXE1: Acetyl xylan es 99.7 3.9E-15 8.4E-20 122.1 19.1 121 26-148 60-210 (320)
87 PF06500 DUF1100: Alpha/beta h 99.7 6.4E-15 1.4E-19 121.7 18.4 124 23-148 165-297 (411)
88 TIGR03230 lipo_lipase lipoprot 99.7 1.1E-15 2.3E-20 128.9 13.2 104 43-148 41-155 (442)
89 COG2945 Predicted hydrolase of 99.7 4.6E-15 9.9E-20 107.3 14.4 171 43-347 28-205 (210)
90 KOG2624 Triglyceride lipase-ch 99.7 3.1E-15 6.7E-20 124.5 15.6 305 23-348 49-397 (403)
91 TIGR01840 esterase_phb esteras 99.7 1E-14 2.2E-19 114.3 16.3 107 42-148 12-131 (212)
92 COG0412 Dienelactone hydrolase 99.6 1.7E-14 3.7E-19 113.5 16.7 104 43-147 27-146 (236)
93 cd00707 Pancreat_lipase_like P 99.6 1.1E-15 2.5E-20 123.5 9.5 116 32-149 24-149 (275)
94 COG3243 PhaC Poly(3-hydroxyalk 99.6 1.6E-15 3.5E-20 123.3 9.7 110 43-152 107-222 (445)
95 COG0400 Predicted esterase [Ge 99.6 1.2E-14 2.7E-19 110.4 11.8 106 43-149 18-136 (207)
96 PF08538 DUF1749: Protein of u 99.6 7.4E-14 1.6E-18 110.7 13.9 110 33-151 21-152 (303)
97 TIGR03502 lipase_Pla1_cef extr 99.6 3.1E-14 6.6E-19 127.6 12.7 112 22-133 417-576 (792)
98 PF06821 Ser_hydrolase: Serine 99.6 2.5E-14 5.4E-19 106.4 10.1 89 46-148 1-92 (171)
99 PF00975 Thioesterase: Thioest 99.6 2.3E-13 4.9E-18 108.4 15.6 101 44-148 1-105 (229)
100 COG3458 Acetyl esterase (deace 99.6 1.7E-13 3.7E-18 104.6 13.4 122 25-148 59-211 (321)
101 PF12146 Hydrolase_4: Putative 99.6 4E-14 8.6E-19 90.4 8.5 75 32-107 1-79 (79)
102 COG4757 Predicted alpha/beta h 99.5 1.4E-14 3E-19 107.8 7.1 116 28-145 11-136 (281)
103 PF02273 Acyl_transf_2: Acyl t 99.5 3.4E-13 7.3E-18 101.4 13.8 118 27-148 6-135 (294)
104 COG3571 Predicted hydrolase of 99.5 6.9E-13 1.5E-17 92.8 14.3 106 45-150 16-127 (213)
105 PF12740 Chlorophyllase2: Chlo 99.5 6.9E-13 1.5E-17 103.3 13.7 105 42-148 16-132 (259)
106 TIGR00976 /NonD putative hydro 99.5 1.2E-13 2.5E-18 123.5 10.1 117 30-149 4-134 (550)
107 PRK10115 protease 2; Provision 99.5 2.9E-12 6.2E-17 116.5 18.6 123 27-149 421-561 (686)
108 PF05728 UPF0227: Uncharacteri 99.5 1.9E-12 4.1E-17 97.4 14.5 88 46-149 2-93 (187)
109 KOG3043 Predicted hydrolase re 99.4 8.7E-13 1.9E-17 98.0 10.1 120 25-146 20-153 (242)
110 PF06028 DUF915: Alpha/beta hy 99.4 3.5E-12 7.5E-17 100.6 12.1 108 43-150 11-146 (255)
111 PF10230 DUF2305: Uncharacteri 99.4 2E-11 4.4E-16 98.2 16.7 107 43-149 2-124 (266)
112 PTZ00472 serine carboxypeptida 99.4 1.4E-11 3E-16 106.8 15.5 125 25-150 49-219 (462)
113 PF07859 Abhydrolase_3: alpha/ 99.4 2.2E-12 4.7E-17 101.4 9.8 99 46-149 1-112 (211)
114 PF07224 Chlorophyllase: Chlor 99.4 1.1E-11 2.4E-16 94.5 12.1 107 41-150 44-160 (307)
115 PRK10252 entF enterobactin syn 99.4 5.5E-11 1.2E-15 118.1 19.6 102 40-146 1065-1170(1296)
116 PF09752 DUF2048: Uncharacteri 99.4 1.9E-10 4.2E-15 92.9 18.9 240 43-348 92-348 (348)
117 PF03403 PAF-AH_p_II: Platelet 99.4 5.6E-12 1.2E-16 106.2 10.7 105 43-148 100-263 (379)
118 PF07819 PGAP1: PGAP1-like pro 99.3 1.7E-11 3.6E-16 95.9 11.3 107 42-149 3-125 (225)
119 PRK05371 x-prolyl-dipeptidyl a 99.3 6E-11 1.3E-15 108.8 15.4 85 61-148 270-374 (767)
120 COG3545 Predicted esterase of 99.3 7.1E-11 1.5E-15 84.8 12.2 92 44-148 3-95 (181)
121 PF02129 Peptidase_S15: X-Pro 99.3 6.1E-11 1.3E-15 96.6 13.2 118 31-151 1-140 (272)
122 PF06057 VirJ: Bacterial virul 99.3 1.5E-10 3.2E-15 85.3 12.9 96 45-147 4-107 (192)
123 KOG2100 Dipeptidyl aminopeptid 99.3 3.7E-10 7.9E-15 103.4 17.5 129 19-149 494-646 (755)
124 PLN02733 phosphatidylcholine-s 99.3 6.5E-11 1.4E-15 101.0 11.3 126 23-149 68-203 (440)
125 PF08840 BAAT_C: BAAT / Acyl-C 99.2 1.9E-11 4.1E-16 95.1 6.9 51 98-149 5-58 (213)
126 KOG1515 Arylacetamide deacetyl 99.2 2E-09 4.3E-14 88.3 18.8 105 43-152 90-212 (336)
127 PF03959 FSH1: Serine hydrolas 99.2 7.5E-11 1.6E-15 92.0 9.3 104 43-147 4-145 (212)
128 COG4188 Predicted dienelactone 99.2 7.3E-11 1.6E-15 95.6 8.4 93 43-135 71-182 (365)
129 COG0657 Aes Esterase/lipase [L 99.2 4.8E-09 1E-13 87.5 18.9 103 43-150 79-194 (312)
130 KOG4627 Kynurenine formamidase 99.2 1.7E-10 3.7E-15 84.6 8.4 112 34-149 55-174 (270)
131 KOG2551 Phospholipase/carboxyh 99.2 1.9E-09 4.2E-14 80.5 13.9 58 280-347 161-218 (230)
132 PF01674 Lipase_2: Lipase (cla 99.2 7.6E-11 1.6E-15 90.7 6.6 89 44-133 2-96 (219)
133 PF10503 Esterase_phd: Esteras 99.2 1.8E-09 3.9E-14 83.3 14.0 106 43-148 16-133 (220)
134 PF12715 Abhydrolase_7: Abhydr 99.1 1E-09 2.2E-14 89.7 11.6 102 43-145 115-258 (390)
135 PRK04940 hypothetical protein; 99.1 2.9E-09 6.3E-14 78.4 12.8 87 46-149 2-94 (180)
136 PF11339 DUF3141: Protein of u 99.1 9.6E-09 2.1E-13 86.5 16.9 228 67-331 97-350 (581)
137 KOG2281 Dipeptidyl aminopeptid 99.1 4.5E-09 9.7E-14 90.2 13.3 117 31-147 622-762 (867)
138 KOG2112 Lysophospholipase [Lip 99.1 4.2E-09 9.1E-14 78.3 11.4 104 44-147 4-128 (206)
139 smart00824 PKS_TE Thioesterase 99.0 3.7E-08 8E-13 77.3 17.5 95 48-147 2-102 (212)
140 KOG3975 Uncharacterized conser 99.0 7.3E-09 1.6E-13 78.6 11.9 123 25-147 3-147 (301)
141 COG3319 Thioesterase domains o 99.0 3.7E-09 8E-14 83.3 10.8 100 44-148 1-104 (257)
142 PF03583 LIP: Secretory lipase 99.0 1.1E-08 2.4E-13 83.5 13.8 63 280-345 217-281 (290)
143 PF05677 DUF818: Chlamydia CHL 99.0 3.7E-07 7.9E-12 73.4 20.4 109 21-134 110-237 (365)
144 COG4099 Predicted peptidase [G 98.9 2.9E-08 6.2E-13 77.5 11.4 114 31-147 170-304 (387)
145 KOG3847 Phospholipase A2 (plat 98.9 6E-09 1.3E-13 81.7 7.4 105 44-149 119-277 (399)
146 PF00151 Lipase: Lipase; Inte 98.9 2.8E-09 6E-14 88.1 4.9 106 43-150 71-190 (331)
147 PF00450 Peptidase_S10: Serine 98.8 3.2E-07 6.9E-12 80.1 15.8 123 26-149 14-183 (415)
148 PF05990 DUF900: Alpha/beta hy 98.8 1.2E-07 2.7E-12 74.7 11.5 107 42-149 17-139 (233)
149 COG1075 LipA Predicted acetylt 98.8 2.6E-08 5.7E-13 83.1 7.7 103 43-149 59-166 (336)
150 PF05057 DUF676: Putative seri 98.7 7.3E-08 1.6E-12 75.4 7.6 88 44-131 5-97 (217)
151 PF05705 DUF829: Eukaryotic pr 98.7 8.5E-07 1.8E-11 71.0 13.2 64 280-346 176-240 (240)
152 COG3509 LpqC Poly(3-hydroxybut 98.7 6.4E-07 1.4E-11 70.4 11.8 126 22-147 34-179 (312)
153 KOG3253 Predicted alpha/beta h 98.6 1.4E-07 3E-12 80.7 8.5 99 43-149 176-288 (784)
154 PF12048 DUF3530: Protein of u 98.6 2E-05 4.3E-10 65.1 19.5 129 20-148 59-230 (310)
155 COG4814 Uncharacterized protei 98.6 6E-07 1.3E-11 68.7 9.5 105 44-148 46-177 (288)
156 PRK10439 enterobactin/ferric e 98.5 1.7E-06 3.7E-11 74.2 12.7 104 43-147 209-323 (411)
157 PF05577 Peptidase_S28: Serine 98.5 1.7E-06 3.7E-11 75.7 12.9 118 33-150 14-151 (434)
158 KOG4840 Predicted hydrolases o 98.5 2.1E-06 4.5E-11 64.4 10.7 118 28-150 19-147 (299)
159 PF02450 LCAT: Lecithin:choles 98.5 8.5E-07 1.9E-11 75.8 9.4 115 25-149 32-162 (389)
160 KOG1553 Predicted alpha/beta h 98.4 1.7E-06 3.7E-11 69.3 9.2 98 44-146 244-344 (517)
161 PF04301 DUF452: Protein of un 98.4 2.2E-06 4.8E-11 65.4 9.1 82 43-150 11-93 (213)
162 PLN02209 serine carboxypeptida 98.4 0.00012 2.6E-09 63.4 20.4 124 26-149 42-214 (437)
163 COG2936 Predicted acyl esteras 98.4 3.8E-06 8.3E-11 73.0 11.0 122 27-149 24-161 (563)
164 KOG1551 Uncharacterized conser 98.4 2.3E-05 5.1E-10 60.5 13.4 56 285-348 309-365 (371)
165 PF00756 Esterase: Putative es 98.3 1.7E-06 3.7E-11 69.9 7.5 106 44-149 25-152 (251)
166 KOG3724 Negative regulator of 98.3 2.8E-06 6.1E-11 75.3 8.9 113 31-148 66-221 (973)
167 PLN02606 palmitoyl-protein thi 98.3 5.2E-06 1.1E-10 66.5 8.8 101 43-148 26-133 (306)
168 KOG1282 Serine carboxypeptidas 98.3 0.0008 1.7E-08 58.0 22.4 126 26-151 47-217 (454)
169 PLN03016 sinapoylglucose-malat 98.2 0.00041 8.9E-09 60.1 20.1 65 282-348 347-430 (433)
170 COG4782 Uncharacterized protei 98.2 1.3E-05 2.8E-10 65.2 9.4 106 43-149 116-236 (377)
171 cd00312 Esterase_lipase Estera 98.2 8.7E-06 1.9E-10 72.7 8.8 105 43-149 95-215 (493)
172 PF10340 DUF2424: Protein of u 98.1 0.00014 3E-09 60.6 13.3 105 43-150 122-238 (374)
173 PLN02633 palmitoyl protein thi 98.1 5.5E-05 1.2E-09 60.8 10.0 101 43-148 25-132 (314)
174 KOG2541 Palmitoyl protein thio 98.0 5.1E-05 1.1E-09 59.0 9.3 100 44-148 24-129 (296)
175 COG3150 Predicted esterase [Ge 98.0 6.5E-05 1.4E-09 53.9 8.9 90 46-149 2-93 (191)
176 PF02089 Palm_thioest: Palmito 98.0 5.8E-06 1.3E-10 65.6 4.1 103 44-148 6-117 (279)
177 PF08386 Abhydrolase_4: TAP-li 98.0 7.2E-06 1.6E-10 55.7 3.9 60 282-348 34-93 (103)
178 PF10142 PhoPQ_related: PhoPQ- 98.0 0.00024 5.2E-09 59.4 12.7 59 280-347 260-318 (367)
179 KOG3101 Esterase D [General fu 97.8 2.9E-05 6.2E-10 58.0 4.8 109 43-151 44-180 (283)
180 KOG2183 Prolylcarboxypeptidase 97.8 0.00025 5.3E-09 58.8 10.4 115 33-147 65-202 (492)
181 COG1770 PtrB Protease II [Amin 97.8 0.00074 1.6E-08 59.6 13.7 120 30-149 427-564 (682)
182 COG1073 Hydrolases of the alph 97.8 0.00028 6.2E-09 58.4 10.7 65 280-349 229-297 (299)
183 KOG3967 Uncharacterized conser 97.8 0.00034 7.3E-09 52.5 9.2 106 43-148 101-228 (297)
184 KOG2369 Lecithin:cholesterol a 97.8 4.8E-05 1E-09 64.2 5.3 89 57-148 124-226 (473)
185 COG2272 PnbA Carboxylesterase 97.7 9.7E-05 2.1E-09 62.9 7.0 119 30-148 77-218 (491)
186 PLN02517 phosphatidylcholine-s 97.7 0.00011 2.5E-09 64.2 7.5 86 57-149 156-265 (642)
187 PLN02213 sinapoylglucose-malat 97.7 0.0054 1.2E-07 51.3 17.2 65 282-348 233-316 (319)
188 PF06441 EHN: Epoxide hydrolas 97.7 0.00017 3.7E-09 49.3 6.2 51 12-62 57-111 (112)
189 COG0627 Predicted esterase [Ge 97.7 0.00021 4.6E-09 58.8 7.8 110 43-152 54-192 (316)
190 PF07082 DUF1350: Protein of u 97.6 0.0014 3E-08 51.1 11.3 91 45-146 19-124 (250)
191 PF00135 COesterase: Carboxyle 97.6 0.00022 4.8E-09 64.6 8.0 105 44-148 126-246 (535)
192 COG4553 DepA Poly-beta-hydroxy 97.6 0.0031 6.8E-08 50.0 12.8 104 43-150 103-212 (415)
193 cd00741 Lipase Lipase. Lipase 97.6 0.00025 5.3E-09 52.4 6.1 52 98-149 10-69 (153)
194 COG1505 Serine proteases of th 97.5 0.00032 6.9E-09 61.1 7.3 120 28-148 400-536 (648)
195 KOG2182 Hydrolytic enzymes of 97.5 0.00063 1.4E-08 58.0 8.5 107 43-149 86-209 (514)
196 PF01764 Lipase_3: Lipase (cla 97.4 0.00043 9.3E-09 50.3 6.1 37 97-133 49-85 (140)
197 COG3946 VirJ Type IV secretory 97.4 0.00059 1.3E-08 56.5 7.3 84 45-135 262-349 (456)
198 PF11144 DUF2920: Protein of u 97.4 0.0018 3.9E-08 54.4 10.1 36 113-148 185-220 (403)
199 KOG2237 Predicted serine prote 97.4 0.0035 7.5E-08 55.3 11.3 122 28-149 447-586 (712)
200 PF06259 Abhydrolase_8: Alpha/ 97.3 0.007 1.5E-07 45.3 11.0 55 95-149 87-146 (177)
201 COG2382 Fes Enterochelin ester 97.3 0.002 4.2E-08 51.7 8.3 37 113-149 178-214 (299)
202 PF11187 DUF2974: Protein of u 97.1 0.011 2.3E-07 46.4 11.2 51 98-149 71-125 (224)
203 COG2939 Carboxypeptidase C (ca 97.0 0.0043 9.3E-08 53.4 8.6 107 43-150 101-239 (498)
204 cd00519 Lipase_3 Lipase (class 96.8 0.0033 7.2E-08 49.9 5.8 24 110-133 126-149 (229)
205 PLN02162 triacylglycerol lipas 96.7 0.005 1.1E-07 52.7 6.5 36 96-131 262-297 (475)
206 PF05576 Peptidase_S37: PS-10 96.7 0.0036 7.7E-08 52.4 5.5 105 43-149 63-171 (448)
207 PLN00413 triacylglycerol lipas 96.7 0.0058 1.3E-07 52.5 6.6 51 96-146 268-326 (479)
208 COG2819 Predicted hydrolase of 96.7 0.0037 8E-08 49.4 5.0 40 110-149 135-174 (264)
209 PF01083 Cutinase: Cutinase; 96.5 0.0099 2.1E-07 45.0 6.2 53 97-149 66-124 (179)
210 KOG1516 Carboxylesterase and r 96.2 0.022 4.8E-07 51.8 7.9 106 43-148 112-233 (545)
211 PLN02571 triacylglycerol lipas 96.2 0.0091 2E-07 50.7 4.9 37 96-132 208-246 (413)
212 KOG2521 Uncharacterized conser 96.2 0.11 2.3E-06 43.5 10.9 64 282-348 225-289 (350)
213 PF04083 Abhydro_lipase: Parti 96.1 0.012 2.7E-07 35.4 4.1 37 23-59 13-59 (63)
214 PLN02454 triacylglycerol lipas 96.1 0.01 2.3E-07 50.4 5.1 34 99-132 213-248 (414)
215 PF11288 DUF3089: Protein of u 96.1 0.014 3E-07 44.7 5.2 40 94-133 76-116 (207)
216 COG4287 PqaA PhoPQ-activated p 95.9 0.093 2E-06 43.5 9.1 48 280-333 327-374 (507)
217 PLN02310 triacylglycerol lipas 95.8 0.028 6.1E-07 47.8 6.3 37 96-132 189-229 (405)
218 PLN02408 phospholipase A1 95.8 0.016 3.5E-07 48.5 4.9 36 98-133 184-221 (365)
219 PF05277 DUF726: Protein of un 95.8 0.018 4E-07 48.0 5.0 40 110-149 218-262 (345)
220 COG4947 Uncharacterized protei 95.8 0.02 4.2E-07 41.7 4.5 114 32-149 14-138 (227)
221 PLN02934 triacylglycerol lipas 95.7 0.02 4.4E-07 49.7 5.1 37 95-131 304-340 (515)
222 KOG4372 Predicted alpha/beta h 95.6 0.02 4.3E-07 48.0 4.5 86 43-130 80-168 (405)
223 PLN02324 triacylglycerol lipas 95.4 0.031 6.7E-07 47.6 5.0 35 98-132 199-235 (415)
224 PLN03037 lipase class 3 family 95.2 0.036 7.9E-07 48.4 5.1 36 97-132 299-338 (525)
225 PLN02802 triacylglycerol lipas 95.2 0.038 8.2E-07 48.1 5.0 36 97-132 313-350 (509)
226 PLN02753 triacylglycerol lipas 94.9 0.05 1.1E-06 47.6 5.0 36 97-132 292-332 (531)
227 PF06850 PHB_depo_C: PHB de-po 94.8 0.031 6.7E-07 41.9 3.1 65 282-349 134-202 (202)
228 PLN02719 triacylglycerol lipas 94.8 0.055 1.2E-06 47.2 5.0 36 97-132 278-318 (518)
229 PLN02761 lipase class 3 family 94.7 0.062 1.3E-06 47.0 5.0 36 97-132 273-314 (527)
230 KOG4569 Predicted lipase [Lipi 93.9 0.11 2.5E-06 43.7 5.0 37 96-132 155-191 (336)
231 PF07519 Tannase: Tannase and 93.8 0.86 1.9E-05 40.6 10.4 66 281-348 352-426 (474)
232 KOG1202 Animal-type fatty acid 93.7 0.3 6.6E-06 47.1 7.7 95 42-147 2122-2219(2376)
233 PLN02847 triacylglycerol lipas 93.7 0.14 3E-06 45.7 5.1 23 110-132 249-271 (633)
234 PF08237 PE-PPE: PE-PPE domain 92.8 0.77 1.7E-05 36.2 7.7 80 70-149 2-91 (225)
235 KOG1283 Serine carboxypeptidas 92.4 1.2 2.6E-05 36.5 8.2 104 43-148 31-167 (414)
236 PF09949 DUF2183: Uncharacteri 92.1 2.4 5.2E-05 28.4 8.2 84 58-142 12-97 (100)
237 KOG4540 Putative lipase essent 91.9 0.4 8.7E-06 38.3 5.0 32 103-134 267-298 (425)
238 COG5153 CVT17 Putative lipase 91.9 0.4 8.7E-06 38.3 5.0 32 103-134 267-298 (425)
239 PF07519 Tannase: Tannase and 90.4 0.3 6.5E-06 43.4 3.5 80 68-149 57-152 (474)
240 KOG2029 Uncharacterized conser 87.4 1.3 2.7E-05 39.7 5.0 52 95-146 506-571 (697)
241 KOG2385 Uncharacterized conser 87.3 1.1 2.3E-05 39.3 4.5 43 108-150 443-490 (633)
242 COG2830 Uncharacterized protei 85.6 1.9 4.2E-05 31.4 4.4 79 44-148 12-91 (214)
243 PF06792 UPF0261: Uncharacteri 85.2 18 0.00039 31.3 10.6 101 44-145 2-128 (403)
244 COG3933 Transcriptional antite 83.1 9.1 0.0002 33.2 8.0 74 44-130 110-183 (470)
245 cd01714 ETF_beta The electron 81.9 8.4 0.00018 29.9 7.0 71 63-143 69-145 (202)
246 PF03283 PAE: Pectinacetyleste 81.8 8.1 0.00018 33.1 7.5 39 111-149 155-197 (361)
247 PF05576 Peptidase_S37: PS-10 81.7 4 8.8E-05 35.0 5.4 58 280-346 349-411 (448)
248 TIGR03712 acc_sec_asp2 accesso 80.9 40 0.00087 30.0 13.9 112 26-145 269-388 (511)
249 PRK02399 hypothetical protein; 78.8 43 0.00094 29.1 12.3 101 47-147 6-132 (406)
250 KOG4388 Hormone-sensitive lipa 77.6 4.9 0.00011 36.1 4.9 97 45-146 398-507 (880)
251 PF06309 Torsin: Torsin; Inte 76.0 19 0.00041 25.4 6.5 29 42-70 51-81 (127)
252 COG0529 CysC Adenylylsulfate k 75.3 8.8 0.00019 28.9 4.9 37 41-77 20-58 (197)
253 cd07225 Pat_PNPLA6_PNPLA7 Pata 74.6 5 0.00011 33.5 4.1 32 102-133 33-64 (306)
254 PF00698 Acyl_transf_1: Acyl t 74.2 3 6.6E-05 35.0 2.8 31 102-132 74-104 (318)
255 TIGR00521 coaBC_dfp phosphopan 73.8 46 0.001 29.0 9.7 95 44-145 113-233 (390)
256 smart00827 PKS_AT Acyl transfe 72.3 5.1 0.00011 33.3 3.7 31 102-132 72-102 (298)
257 cd07198 Patatin Patatin-like p 72.0 7.1 0.00015 29.3 4.1 32 103-134 17-48 (172)
258 PRK10279 hypothetical protein; 71.8 6.1 0.00013 32.9 4.0 34 102-135 23-56 (300)
259 PRK12467 peptide synthase; Pro 71.3 19 0.00041 41.9 8.6 97 44-145 3693-3793(3956)
260 cd07207 Pat_ExoU_VipD_like Exo 70.5 7.6 0.00016 29.8 4.1 29 105-133 20-48 (194)
261 cd07227 Pat_Fungal_NTE1 Fungal 70.3 7.6 0.00016 31.7 4.1 32 102-133 28-59 (269)
262 TIGR03131 malonate_mdcH malona 70.0 6.2 0.00013 32.8 3.7 32 102-133 66-97 (295)
263 PF09994 DUF2235: Uncharacteri 69.8 44 0.00094 27.5 8.5 89 44-132 2-112 (277)
264 cd07210 Pat_hypo_W_succinogene 68.3 9.7 0.00021 30.0 4.3 28 106-133 22-49 (221)
265 TIGR02764 spore_ybaN_pdaB poly 68.1 5.9 0.00013 30.4 3.0 33 45-77 153-188 (191)
266 PF03610 EIIA-man: PTS system 68.0 37 0.0008 23.4 8.1 73 45-130 2-76 (116)
267 PRK05579 bifunctional phosphop 68.0 64 0.0014 28.3 9.4 73 43-119 116-196 (399)
268 COG1752 RssA Predicted esteras 67.2 8.6 0.00019 32.2 4.0 33 102-134 29-61 (306)
269 COG1576 Uncharacterized conser 65.6 22 0.00047 26.0 5.1 49 70-129 67-115 (155)
270 TIGR02873 spore_ylxY probable 65.2 9.2 0.0002 31.2 3.7 34 44-77 231-264 (268)
271 TIGR00128 fabD malonyl CoA-acy 65.2 8.3 0.00018 31.9 3.6 31 103-133 73-104 (290)
272 cd07228 Pat_NTE_like_bacteria 64.1 13 0.00029 27.9 4.2 29 106-134 22-50 (175)
273 cd07230 Pat_TGL4-5_like Triacy 63.7 6.6 0.00014 34.5 2.8 35 106-140 95-129 (421)
274 KOG2872 Uroporphyrinogen decar 63.6 34 0.00073 28.0 6.2 71 43-120 252-336 (359)
275 TIGR02884 spore_pdaA delta-lac 63.4 11 0.00024 29.8 3.7 34 44-77 187-221 (224)
276 PF10081 Abhydrolase_9: Alpha/ 62.9 15 0.00032 30.0 4.3 53 97-149 91-149 (289)
277 COG2939 Carboxypeptidase C (ca 62.2 19 0.0004 32.0 5.1 65 282-347 425-489 (498)
278 cd07209 Pat_hypo_Ecoli_Z1214_l 61.9 14 0.0003 29.0 4.0 32 103-134 17-48 (215)
279 KOG1200 Mitochondrial/plastidi 61.5 51 0.0011 25.5 6.5 33 45-79 15-47 (256)
280 cd07231 Pat_SDP1-like Sugar-De 61.2 8.4 0.00018 32.1 2.7 35 106-140 90-124 (323)
281 cd07229 Pat_TGL3_like Triacylg 61.0 8.3 0.00018 33.3 2.8 37 105-141 104-140 (391)
282 cd07232 Pat_PLPL Patain-like p 60.5 8.3 0.00018 33.7 2.8 37 105-141 88-124 (407)
283 cd07205 Pat_PNPLA6_PNPLA7_NTE1 59.5 20 0.00043 27.0 4.4 28 106-133 22-49 (175)
284 KOG1252 Cystathionine beta-syn 58.6 82 0.0018 26.6 7.8 54 26-80 187-249 (362)
285 PF00448 SRP54: SRP54-type pro 58.5 84 0.0018 24.3 8.9 79 56-144 69-149 (196)
286 cd07212 Pat_PNPLA9 Patatin-lik 57.2 22 0.00048 29.8 4.7 19 115-133 35-53 (312)
287 PF04244 DPRP: Deoxyribodipyri 56.3 34 0.00073 27.1 5.3 48 59-117 51-98 (224)
288 PF00326 Peptidase_S9: Prolyl 55.5 57 0.0012 25.3 6.6 62 43-108 144-208 (213)
289 TIGR02816 pfaB_fam PfaB family 54.7 16 0.00034 33.3 3.6 31 103-133 255-286 (538)
290 COG3340 PepE Peptidase E [Amin 54.4 67 0.0015 25.1 6.3 37 43-79 32-71 (224)
291 PHA02114 hypothetical protein 54.2 20 0.00044 23.5 3.1 33 45-77 84-116 (127)
292 COG0541 Ffh Signal recognition 53.7 79 0.0017 27.8 7.3 72 65-146 177-250 (451)
293 PF12242 Eno-Rase_NADH_b: NAD( 53.6 29 0.00064 21.9 3.5 24 110-133 38-61 (78)
294 PF02590 SPOUT_MTase: Predicte 53.6 29 0.00062 25.6 4.2 44 70-123 67-110 (155)
295 PF01583 APS_kinase: Adenylyls 52.7 35 0.00075 25.2 4.5 35 43-77 1-37 (156)
296 cd07208 Pat_hypo_Ecoli_yjju_li 51.9 25 0.00054 28.7 4.2 30 106-135 20-50 (266)
297 PRK09273 hypothetical protein; 50.5 1.2E+02 0.0026 23.7 8.4 77 57-144 17-94 (211)
298 PRK14974 cell division protein 49.9 1.5E+02 0.0033 25.3 8.5 68 67-144 219-288 (336)
299 PF11713 Peptidase_C80: Peptid 49.6 17 0.00037 26.9 2.5 51 74-124 57-116 (157)
300 PRK00103 rRNA large subunit me 49.2 56 0.0012 24.2 5.1 46 70-125 67-112 (157)
301 PRK05282 (alpha)-aspartyl dipe 49.1 82 0.0018 25.2 6.4 38 42-79 30-70 (233)
302 TIGR01425 SRP54_euk signal rec 47.9 2E+02 0.0044 25.6 9.0 71 63-143 175-247 (429)
303 COG4822 CbiK Cobalamin biosynt 47.8 1.4E+02 0.0029 23.5 7.1 59 44-117 139-199 (265)
304 COG1087 GalE UDP-glucose 4-epi 47.1 95 0.0021 25.9 6.4 88 61-149 15-122 (329)
305 cd07206 Pat_TGL3-4-5_SDP1 Tria 46.4 31 0.00068 28.6 3.8 29 109-137 94-122 (298)
306 cd07224 Pat_like Patatin-like 46.4 36 0.00078 27.2 4.1 31 104-134 19-51 (233)
307 KOG4389 Acetylcholinesterase/B 45.6 26 0.00056 31.1 3.3 108 43-150 135-258 (601)
308 TIGR00246 tRNA_RlmH_YbeA rRNA 44.9 48 0.001 24.4 4.2 45 71-126 66-110 (153)
309 COG1506 DAP2 Dipeptidyl aminop 42.9 71 0.0015 30.0 6.1 43 43-85 551-596 (620)
310 PF05724 TPMT: Thiopurine S-me 42.9 31 0.00067 27.2 3.2 32 43-79 37-68 (218)
311 COG1448 TyrB Aspartate/tyrosin 42.7 2.2E+02 0.0048 24.7 8.1 85 44-145 172-263 (396)
312 cd06292 PBP1_LacI_like_10 Liga 41.5 1.8E+02 0.0039 23.4 7.8 74 45-120 58-131 (273)
313 TIGR02069 cyanophycinase cyano 40.9 1.6E+02 0.0034 23.9 7.0 38 42-79 27-66 (250)
314 PRK13256 thiopurine S-methyltr 40.8 35 0.00077 27.0 3.2 30 45-79 45-74 (226)
315 COG0159 TrpA Tryptophan syntha 40.1 1.6E+02 0.0035 24.0 6.8 63 44-122 96-159 (265)
316 PF03853 YjeF_N: YjeF-related 40.1 54 0.0012 24.6 4.0 35 42-76 24-58 (169)
317 PF13207 AAA_17: AAA domain; P 40.1 96 0.0021 21.2 5.2 61 46-109 1-64 (121)
318 COG3727 Vsr DNA G:T-mismatch r 40.0 74 0.0016 22.6 4.2 14 63-76 101-114 (150)
319 cd03818 GT1_ExpC_like This fam 39.9 64 0.0014 28.1 5.1 37 46-84 2-38 (396)
320 PF02230 Abhydrolase_2: Phosph 39.8 1.2E+02 0.0027 23.6 6.3 57 43-108 155-214 (216)
321 PF02633 Creatininase: Creatin 38.6 1.7E+02 0.0036 23.4 6.9 71 60-131 43-120 (237)
322 COG0482 TrmU Predicted tRNA(5- 38.5 1E+02 0.0023 26.3 5.7 46 63-112 20-65 (356)
323 PRK07313 phosphopantothenoylcy 38.5 1.4E+02 0.0031 22.7 6.1 61 43-107 113-179 (182)
324 cd07204 Pat_PNPLA_like Patatin 38.4 59 0.0013 26.2 4.2 20 115-134 34-53 (243)
325 PF13439 Glyco_transf_4: Glyco 38.1 1.6E+02 0.0034 21.4 7.0 30 51-80 10-39 (177)
326 PF05577 Peptidase_S28: Serine 37.5 44 0.00095 29.7 3.7 40 282-331 376-415 (434)
327 cd03146 GAT1_Peptidase_E Type 37.3 2E+02 0.0044 22.5 7.7 85 42-128 30-129 (212)
328 cd07218 Pat_iPLA2 Calcium-inde 37.3 60 0.0013 26.2 4.1 20 115-134 33-52 (245)
329 COG3946 VirJ Type IV secretory 36.5 2.2E+02 0.0048 25.0 7.2 101 45-145 50-155 (456)
330 PF10605 3HBOH: 3HB-oligomer h 36.5 37 0.0008 31.1 3.0 48 280-330 552-604 (690)
331 PF14253 AbiH: Bacteriophage a 36.4 38 0.00082 27.6 3.0 15 110-124 233-247 (270)
332 KOG0781 Signal recognition par 36.3 1.8E+02 0.004 26.2 6.9 71 64-144 460-539 (587)
333 KOG1202 Animal-type fatty acid 35.6 26 0.00056 35.1 2.0 27 99-125 569-595 (2376)
334 cd01819 Patatin_and_cPLA2 Pata 35.5 70 0.0015 23.5 4.0 19 112-130 28-46 (155)
335 cd00006 PTS_IIA_man PTS_IIA, P 35.3 1.5E+02 0.0034 20.6 7.9 70 45-127 3-73 (122)
336 COG3887 Predicted signaling pr 34.8 83 0.0018 28.9 4.8 44 99-145 327-376 (655)
337 COG3673 Uncharacterized conser 34.4 2.9E+02 0.0063 23.5 9.0 89 44-132 32-142 (423)
338 TIGR03709 PPK2_rel_1 polyphosp 34.2 58 0.0013 26.6 3.5 38 42-79 54-93 (264)
339 PRK13982 bifunctional SbtC-lik 33.5 3.7E+02 0.008 24.4 10.0 61 43-107 180-247 (475)
340 TIGR01626 ytfJ_HI0045 conserve 32.9 2.3E+02 0.0049 21.8 7.8 93 25-130 37-142 (184)
341 cd05312 NAD_bind_1_malic_enz N 32.9 1.9E+02 0.004 24.0 6.2 80 45-128 26-122 (279)
342 PRK04435 hypothetical protein; 32.7 1.6E+02 0.0034 21.5 5.3 51 28-78 52-102 (147)
343 TIGR03707 PPK2_P_aer polyphosp 32.7 66 0.0014 25.6 3.6 68 43-124 30-101 (230)
344 COG4850 Uncharacterized conser 32.6 1.8E+02 0.0039 24.6 6.0 49 98-146 264-314 (373)
345 PF13383 Methyltransf_22: Meth 32.6 88 0.0019 25.2 4.3 38 43-80 192-229 (242)
346 PF03033 Glyco_transf_28: Glyc 32.3 61 0.0013 22.9 3.2 33 46-78 2-34 (139)
347 cd07221 Pat_PNPLA3 Patatin-lik 32.1 83 0.0018 25.5 4.2 21 114-134 34-54 (252)
348 COG0331 FabD (acyl-carrier-pro 31.8 57 0.0012 27.4 3.2 22 110-131 83-104 (310)
349 cd07217 Pat17_PNPLA8_PNPLA9_li 31.6 45 0.00097 28.5 2.7 18 115-132 44-61 (344)
350 TIGR03249 KdgD 5-dehydro-4-deo 31.4 3.1E+02 0.0067 22.9 11.9 86 55-147 24-110 (296)
351 cd07220 Pat_PNPLA2 Patatin-lik 31.4 82 0.0018 25.5 4.0 21 114-134 38-58 (249)
352 PRK08105 flavodoxin; Provision 31.2 1.8E+02 0.0039 21.2 5.5 65 45-115 52-120 (149)
353 cd04951 GT1_WbdM_like This fam 31.0 3.2E+02 0.007 22.9 8.9 35 46-80 3-39 (360)
354 PF06415 iPGM_N: BPG-independe 30.6 2.8E+02 0.006 22.1 6.6 59 55-118 44-103 (223)
355 COG0279 GmhA Phosphoheptose is 30.4 64 0.0014 24.1 2.9 74 47-124 44-121 (176)
356 PRK11320 prpB 2-methylisocitra 30.3 3.3E+02 0.0071 22.8 8.5 71 44-118 80-155 (292)
357 PF03205 MobB: Molybdopterin g 30.3 2E+02 0.0042 20.8 5.5 43 45-87 1-45 (140)
358 COG1856 Uncharacterized homolo 30.2 1.4E+02 0.0031 23.6 4.8 80 62-144 102-187 (275)
359 cd00382 beta_CA Carbonic anhyd 30.1 80 0.0017 22.0 3.3 31 97-127 44-74 (119)
360 PF03976 PPK2: Polyphosphate k 30.0 37 0.00079 27.0 1.8 37 43-79 30-68 (228)
361 cd07222 Pat_PNPLA4 Patatin-lik 29.9 80 0.0017 25.5 3.8 21 115-136 34-54 (246)
362 cd02065 B12-binding_like B12 b 29.7 1.9E+02 0.0041 19.9 6.8 33 45-77 2-34 (125)
363 PRK06824 translation initiatio 29.7 2E+02 0.0043 20.1 6.2 69 32-112 42-112 (118)
364 PF14488 DUF4434: Domain of un 29.4 2.1E+02 0.0046 21.4 5.7 59 54-112 17-80 (166)
365 cd07211 Pat_PNPLA8 Patatin-lik 28.8 45 0.00097 28.0 2.2 17 115-131 44-60 (308)
366 TIGR00632 vsr DNA mismatch end 28.8 95 0.0021 21.6 3.4 13 64-76 101-113 (117)
367 KOG0780 Signal recognition par 28.6 3.7E+02 0.0079 23.7 7.2 57 64-130 177-233 (483)
368 COG2185 Sbm Methylmalonyl-CoA 28.0 2.4E+02 0.0052 20.5 6.3 39 41-79 10-49 (143)
369 PLN03050 pyridoxine (pyridoxam 27.8 1.4E+02 0.0029 24.2 4.7 34 44-77 61-94 (246)
370 cd07213 Pat17_PNPLA8_PNPLA9_li 27.7 55 0.0012 27.1 2.6 19 115-133 37-55 (288)
371 TIGR03127 RuMP_HxlB 6-phospho 27.4 1.3E+02 0.0028 22.6 4.4 32 46-77 32-63 (179)
372 cd03379 beta_CA_cladeD Carboni 27.2 1E+02 0.0022 22.3 3.6 29 97-125 41-69 (142)
373 PF10686 DUF2493: Protein of u 26.8 1.3E+02 0.0027 18.7 3.4 31 43-76 31-63 (71)
374 KOG2805 tRNA (5-methylaminomet 26.8 2.7E+02 0.0058 23.5 6.0 47 63-111 22-68 (377)
375 PF08484 Methyltransf_14: C-me 26.5 2.4E+02 0.0053 20.9 5.5 47 99-145 54-102 (160)
376 PRK01261 aroD 3-dehydroquinate 26.4 87 0.0019 25.0 3.3 29 95-123 158-186 (229)
377 PRK06029 3-octaprenyl-4-hydrox 26.4 3E+02 0.0065 21.1 7.3 61 44-112 116-177 (185)
378 TIGR02354 thiF_fam2 thiamine b 26.4 1.5E+02 0.0032 23.0 4.6 41 103-146 13-54 (200)
379 PF01734 Patatin: Patatin-like 26.3 58 0.0013 24.5 2.4 21 112-132 27-47 (204)
380 KOG2170 ATPase of the AAA+ sup 26.2 1.7E+02 0.0037 24.5 4.9 17 43-59 109-125 (344)
381 cd03145 GAT1_cyanophycinase Ty 26.1 3.3E+02 0.0071 21.4 6.7 38 42-79 28-67 (217)
382 COG0859 RfaF ADP-heptose:LPS h 26.0 1.4E+02 0.003 25.4 4.7 34 43-76 175-214 (334)
383 TIGR02883 spore_cwlD N-acetylm 25.9 1.7E+02 0.0037 22.4 4.8 38 73-111 2-44 (189)
384 PRK07451 translation initiatio 25.8 2.4E+02 0.0051 19.7 6.5 66 35-112 42-109 (115)
385 PRK11613 folP dihydropteroate 25.8 3.9E+02 0.0085 22.2 7.9 58 60-126 166-225 (282)
386 PF01656 CbiA: CobQ/CobB/MinD/ 25.7 1.1E+02 0.0024 23.1 3.9 32 47-78 2-35 (195)
387 PRK13255 thiopurine S-methyltr 25.5 1E+02 0.0022 24.4 3.5 17 63-79 52-68 (218)
388 PRK06731 flhF flagellar biosyn 25.5 3.9E+02 0.0084 22.1 8.8 72 63-144 146-220 (270)
389 PRK15180 Vi polysaccharide bio 25.5 2.8E+02 0.006 25.0 6.2 77 44-120 97-197 (831)
390 PRK06259 succinate dehydrogena 25.4 3.6E+02 0.0077 24.5 7.4 72 43-115 260-335 (486)
391 cd00883 beta_CA_cladeA Carboni 25.1 1.1E+02 0.0024 23.3 3.5 32 98-129 67-98 (182)
392 PF02502 LacAB_rpiB: Ribose/Ga 25.0 2.7E+02 0.0059 20.2 7.8 72 60-144 15-87 (140)
393 PF08433 KTI12: Chromatin asso 24.8 2.7E+02 0.006 22.9 6.0 38 45-82 2-41 (270)
394 TIGR00959 ffh signal recogniti 24.4 5.2E+02 0.011 23.1 8.9 72 62-143 174-247 (428)
395 COG1255 Uncharacterized protei 24.1 87 0.0019 21.7 2.4 22 58-79 24-45 (129)
396 KOG2182 Hydrolytic enzymes of 24.1 1.5E+02 0.0033 26.6 4.5 58 280-347 431-500 (514)
397 PRK15219 carbonic anhydrase; P 24.0 84 0.0018 25.3 2.8 32 98-129 129-160 (245)
398 PRK09936 hypothetical protein; 23.9 3.4E+02 0.0075 22.6 6.2 31 55-85 36-66 (296)
399 PF12000 Glyco_trans_4_3: Gkyc 23.8 3.3E+02 0.0071 20.6 6.3 24 110-135 64-88 (171)
400 TIGR03607 patatin-related prot 23.7 1.1E+02 0.0023 29.4 3.8 22 110-131 64-85 (739)
401 cd07025 Peptidase_S66 LD-Carbo 23.7 4.2E+02 0.0092 21.9 7.2 56 47-107 3-59 (282)
402 COG2513 PrpB PEP phosphonomuta 23.6 4.3E+02 0.0094 22.0 7.7 74 44-118 80-155 (289)
403 KOG4231 Intracellular membrane 23.5 96 0.0021 27.9 3.2 17 116-132 454-470 (763)
404 PRK05368 homoserine O-succinyl 23.4 1.1E+02 0.0023 25.7 3.4 31 102-132 124-154 (302)
405 cd07199 Pat17_PNPLA8_PNPLA9_li 23.2 1.4E+02 0.003 24.2 4.1 18 115-132 37-54 (258)
406 PRK06490 glutamine amidotransf 23.2 4E+02 0.0086 21.4 7.6 34 97-130 70-103 (239)
407 cd01715 ETF_alpha The electron 23.1 3.2E+02 0.007 20.3 5.9 62 63-134 44-107 (168)
408 TIGR03840 TMPT_Se_Te thiopurin 23.0 1.1E+02 0.0024 24.0 3.3 16 63-78 49-64 (213)
409 cd03131 GATase1_HTS Type 1 glu 22.9 47 0.001 25.1 1.2 31 102-132 87-117 (175)
410 PF06500 DUF1100: Alpha/beta h 22.8 99 0.0021 27.2 3.2 65 280-348 187-254 (411)
411 cd06296 PBP1_CatR_like Ligand- 22.8 4E+02 0.0086 21.3 6.8 72 44-122 57-128 (270)
412 PRK14729 miaA tRNA delta(2)-is 22.8 4.6E+02 0.01 22.0 7.8 74 45-120 5-101 (300)
413 PRK14194 bifunctional 5,10-met 22.7 1.8E+02 0.0039 24.4 4.6 35 99-133 143-183 (301)
414 PF06792 UPF0261: Uncharacteri 22.6 2.1E+02 0.0045 25.1 5.0 42 43-84 184-225 (403)
415 KOG1283 Serine carboxypeptidas 22.6 93 0.002 26.2 2.8 62 282-344 325-409 (414)
416 PF13714 PEP_mutase: Phosphoen 22.5 4.1E+02 0.009 21.4 7.3 71 44-118 71-142 (238)
417 PRK06849 hypothetical protein; 22.5 2.9E+02 0.0064 24.0 6.2 61 59-120 17-85 (389)
418 PF09419 PGP_phosphatase: Mito 22.4 3.5E+02 0.0075 20.4 5.8 55 65-123 35-89 (168)
419 KOG2214 Predicted esterase of 22.2 54 0.0012 29.3 1.5 33 110-142 200-232 (543)
420 PF04763 DUF562: Protein of un 22.1 3E+02 0.0065 19.8 4.7 38 43-80 17-61 (146)
421 TIGR02113 coaC_strep phosphopa 22.1 3.6E+02 0.0078 20.5 5.9 36 43-78 112-150 (177)
422 KOG1209 1-Acyl dihydroxyaceton 22.1 1.8E+02 0.0039 23.0 4.0 38 41-79 4-41 (289)
423 TIGR00421 ubiX_pad polyprenyl 21.9 3.7E+02 0.0079 20.5 7.6 61 44-112 113-174 (181)
424 cd07216 Pat17_PNPLA8_PNPLA9_li 21.8 64 0.0014 27.1 1.9 17 115-131 45-61 (309)
425 cd05005 SIS_PHI Hexulose-6-pho 21.8 2.1E+02 0.0046 21.5 4.6 32 46-77 35-66 (179)
426 COG4667 Predicted esterase of 21.8 1.2E+02 0.0026 24.8 3.2 28 115-142 43-70 (292)
427 PF00484 Pro_CA: Carbonic anhy 21.7 2.5E+02 0.0055 20.4 4.9 34 96-129 39-72 (153)
428 PF01075 Glyco_transf_9: Glyco 21.6 1.4E+02 0.0031 23.7 3.9 34 43-76 105-143 (247)
429 PRK11460 putative hydrolase; P 21.6 3.6E+02 0.0079 21.4 6.1 40 43-82 148-190 (232)
430 COG2376 DAK1 Dihydroxyacetone 21.5 1.6E+02 0.0034 24.9 4.0 42 43-84 248-303 (323)
431 PF14789 THDPS_M: Tetrahydrodi 21.4 1.6E+02 0.0034 16.1 2.8 34 44-77 2-37 (41)
432 TIGR03702 lip_kinase_YegS lipi 21.4 4.8E+02 0.01 21.6 7.6 31 45-75 2-32 (293)
433 PRK14457 ribosomal RNA large s 21.3 5.3E+02 0.012 22.2 8.2 75 45-128 259-335 (345)
434 KOG1752 Glutaredoxin and relat 21.3 2.8E+02 0.006 18.9 5.1 72 43-132 14-89 (104)
435 PLN03019 carbonic anhydrase 21.1 1.4E+02 0.0031 25.2 3.6 32 98-129 201-232 (330)
436 PF07302 AroM: AroM protein; 21.1 1.7E+02 0.0036 23.2 3.8 32 51-82 159-190 (221)
437 PRK05571 ribose-5-phosphate is 21.0 3.5E+02 0.0075 19.9 7.7 73 60-144 16-89 (148)
438 COG4874 Uncharacterized protei 20.9 2.4E+02 0.0051 22.6 4.5 28 59-86 59-86 (318)
439 cd07561 Peptidase_S41_CPP_like 20.7 3.8E+02 0.0083 21.8 6.0 39 45-83 67-106 (256)
440 COG3621 Patatin [General funct 20.6 2.3E+02 0.0049 24.1 4.6 51 71-134 9-64 (394)
441 TIGR02813 omega_3_PfaA polyket 20.6 1E+02 0.0022 34.5 3.4 31 102-132 664-694 (2582)
442 PLN03006 carbonate dehydratase 20.6 1.4E+02 0.003 24.9 3.5 30 98-127 158-187 (301)
443 PF05973 Gp49: Phage derived p 20.6 1.7E+02 0.0038 18.9 3.5 21 32-53 52-72 (91)
444 PRK03846 adenylylsulfate kinas 20.5 2.3E+02 0.0049 21.8 4.6 37 41-77 21-59 (198)
445 COG0386 BtuE Glutathione perox 20.5 2.9E+02 0.0062 20.5 4.6 63 23-86 6-73 (162)
446 PRK10867 signal recognition pa 20.4 6.3E+02 0.014 22.7 9.3 69 64-142 177-247 (433)
447 PRK04148 hypothetical protein; 20.4 1.9E+02 0.0041 20.8 3.7 21 112-132 18-38 (134)
448 KOG2316 Predicted ATPase (PP-l 20.4 1.5E+02 0.0033 23.3 3.4 63 64-128 57-120 (277)
449 PRK08622 galactose-6-phosphate 20.3 3.9E+02 0.0085 20.2 7.8 72 60-144 16-88 (171)
450 PRK13111 trpA tryptophan synth 20.3 4.8E+02 0.01 21.3 7.0 75 44-134 91-166 (258)
451 PRK05665 amidotransferase; Pro 20.1 1.9E+02 0.0041 23.3 4.2 37 94-130 72-108 (240)
452 PRK07053 glutamine amidotransf 20.1 4.6E+02 0.01 21.0 7.3 32 99-130 69-100 (234)
No 1
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-46 Score=292.69 Aligned_cols=309 Identities=50% Similarity=0.950 Sum_probs=268.4
Q ss_pred cchhhhhHhhhcccceEEEeeCCeeEEEEeeCC--CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCC
Q 048209 10 SCTKRKHKQTMEKIEHTTVGTNGINMHVASIGT--GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAP 87 (349)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~--~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~ 87 (349)
.....+....++.+++++++.+|++++|...|+ +|.|+++||++.+..+|+.++..|+..||+|+++|+||+|.|+.+
T Consensus 9 ~~~~~~~~~~~~~~~hk~~~~~gI~~h~~e~g~~~gP~illlHGfPe~wyswr~q~~~la~~~~rviA~DlrGyG~Sd~P 88 (322)
T KOG4178|consen 9 EDPQPPTPLNLSAISHKFVTYKGIRLHYVEGGPGDGPIVLLLHGFPESWYSWRHQIPGLASRGYRVIAPDLRGYGFSDAP 88 (322)
T ss_pred CCCCCCCccChhhcceeeEEEccEEEEEEeecCCCCCEEEEEccCCccchhhhhhhhhhhhcceEEEecCCCCCCCCCCC
Confidence 334444456677899999999999999999985 899999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccc
Q 048209 88 PSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDD 167 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (349)
.....|++..++.|+..+++.++.++++++||+||+++|+.+|..+|++|+++|+++.+.. .+...........+...
T Consensus 89 ~~~~~Yt~~~l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~--~p~~~~~~~~~~~f~~~ 166 (322)
T KOG4178|consen 89 PHISEYTIDELVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP--NPKLKPLDSSKAIFGKS 166 (322)
T ss_pred CCcceeeHHHHHHHHHHHHHHhccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC--CcccchhhhhccccCcc
Confidence 8878999999999999999999999999999999999999999999999999999998877 45556666777778888
Q ss_pred hhhhhccCCccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcc
Q 048209 168 YYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVN 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
++...++.+...+..+...........++......+...+. .....+.|++++.++.+...+...++.+..+
T Consensus 167 ~y~~~fQ~~~~~E~~~s~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~w~t~edi~~~~~~f~~~g~~gplN 238 (322)
T KOG4178|consen 167 YYICLFQEPGKPETELSKDDTEMLVKTFRTRKTPGPLIVPK--------QPNENPLWLTEEDIAFYVSKFQIDGFTGPLN 238 (322)
T ss_pred ceeEeccccCcchhhhccchhHHhHHhhhccccCCccccCC--------CCCCccchhhHHHHHHHHhccccccccccch
Confidence 89999999999999998888888777777766554444433 1122378899999999999998889999999
Q ss_pred cccccccCCCCchhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCC
Q 048209 248 YYRCSDLYVPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVA 327 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 327 (349)
+++.+.. .++ ..++.+.++++|+++|+|+.|.+.+.....+ .+.+..|+..+.++++++|
T Consensus 239 yyrn~~r--------------~w~-a~~~~~~~i~iPv~fi~G~~D~v~~~p~~~~-----~~rk~vp~l~~~vv~~~~g 298 (322)
T KOG4178|consen 239 YYRNFRR--------------NWE-AAPWALAKITIPVLFIWGDLDPVLPYPIFGE-----LYRKDVPRLTERVVIEGIG 298 (322)
T ss_pred hhHHHhh--------------Cch-hccccccccccceEEEEecCcccccchhHHH-----HHHHhhccccceEEecCCc
Confidence 9999988 777 7778888999999999999999999873333 2566777765788999999
Q ss_pred cccchhcHHHHHHHHHHHHHh
Q 048209 328 HFINQEKAEEVGAHIYEFIKK 348 (349)
Q Consensus 328 H~~~~e~~~~~~~~i~~fl~~ 348 (349)
|+++.|+|+++++.|.+|+++
T Consensus 299 H~vqqe~p~~v~~~i~~f~~~ 319 (322)
T KOG4178|consen 299 HFVQQEKPQEVNQAILGFINS 319 (322)
T ss_pred ccccccCHHHHHHHHHHHHHh
Confidence 999999999999999999986
No 2
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=1.8e-37 Score=256.46 Aligned_cols=282 Identities=21% Similarity=0.254 Sum_probs=181.4
Q ss_pred ccceEEEeeCCeeEEEEeeCC-CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCC-----CCcchH
Q 048209 22 KIEHTTVGTNGINMHVASIGT-GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS-----VTSYTA 95 (349)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~g~-~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~-----~~~~~~ 95 (349)
+.+.++++++|.+++|...|+ +++|||+||+++++..|..+++.|++. |+|+++|+||||.|+.+.. ...+++
T Consensus 7 ~~~~~~~~~~~~~i~y~~~G~~~~~vlllHG~~~~~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~ 85 (294)
T PLN02824 7 QVETRTWRWKGYNIRYQRAGTSGPALVLVHGFGGNADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFYTF 85 (294)
T ss_pred CCCCceEEEcCeEEEEEEcCCCCCeEEEECCCCCChhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccCCH
Confidence 455788999999999999995 899999999999999999999999987 7999999999999986542 135899
Q ss_pred HHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccC
Q 048209 96 LHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQE 175 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
+++++++.+++++++.++++++||||||++++.+|.++|++|+++|++++........... ......... .......
T Consensus 86 ~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~ 162 (294)
T PLN02824 86 ETWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQP-WLGRPFIKA--FQNLLRE 162 (294)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccc-hhhhHHHHH--HHHHHhc
Confidence 9999999999999999999999999999999999999999999999999864321110000 000000000 0000000
Q ss_pred CccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccC
Q 048209 176 PGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLY 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
.......+........+..++...... ...++++..+.+........ ....+..+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 220 (294)
T PLN02824 163 TAVGKAFFKSVATPETVKNILCQCYHD-------------------DSAVTDELVEAILRPGLEPG---AVDVFLDFISY 220 (294)
T ss_pred hhHHHHHHHhhcCHHHHHHHHHHhccC-------------------hhhccHHHHHHHHhccCCch---HHHHHHHHhcc
Confidence 000000000000011111111110000 00012222222211100000 00000000000
Q ss_pred CCCchhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcH
Q 048209 256 VPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKA 335 (349)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~ 335 (349)
. ....... .+.++++|+|+|+|++|.++|.+.+.. +.+..++. ++++++++||+++.|+|
T Consensus 221 -~--------~~~~~~~----~l~~i~~P~lvi~G~~D~~~~~~~~~~------~~~~~~~~-~~~~i~~~gH~~~~e~p 280 (294)
T PLN02824 221 -S--------GGPLPEE----LLPAVKCPVLIAWGEKDPWEPVELGRA------YANFDAVE-DFIVLPGVGHCPQDEAP 280 (294)
T ss_pred -c--------cccchHH----HHhhcCCCeEEEEecCCCCCChHHHHH------HHhcCCcc-ceEEeCCCCCChhhhCH
Confidence 0 0000011 123889999999999999999877654 66777777 99999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 048209 336 EEVGAHIYEFIKKF 349 (349)
Q Consensus 336 ~~~~~~i~~fl~~~ 349 (349)
+++.+.|.+|++++
T Consensus 281 ~~~~~~i~~fl~~~ 294 (294)
T PLN02824 281 ELVNPLIESFVARH 294 (294)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999875
No 3
>PRK03592 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=8.2e-37 Score=252.58 Aligned_cols=282 Identities=26% Similarity=0.429 Sum_probs=184.0
Q ss_pred ccceEEEeeCCeeEEEEeeCCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHH
Q 048209 22 KIEHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGD 101 (349)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~ 101 (349)
..+..+++.+|.+++|...|++++|||+||++++...|..+++.|.+. ++|+++|+||||.|+.+. ..++.+++++|
T Consensus 6 ~~~~~~~~~~g~~i~y~~~G~g~~vvllHG~~~~~~~w~~~~~~L~~~-~~via~D~~G~G~S~~~~--~~~~~~~~a~d 82 (295)
T PRK03592 6 PGEMRRVEVLGSRMAYIETGEGDPIVFLHGNPTSSYLWRNIIPHLAGL-GRCLAPDLIGMGASDKPD--IDYTFADHARY 82 (295)
T ss_pred CCcceEEEECCEEEEEEEeCCCCEEEEECCCCCCHHHHHHHHHHHhhC-CEEEEEcCCCCCCCCCCC--CCCCHHHHHHH
Confidence 355677889999999999999999999999999999999999999998 599999999999998765 46899999999
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHH
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEE 181 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (349)
+.+++++++.++++++||||||.+|+.++.++|++|+++|++++........ ......... ...+..+.....
T Consensus 83 l~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~ 155 (295)
T PRK03592 83 LDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWD-DFPPAVREL------FQALRSPGEGEE 155 (295)
T ss_pred HHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchh-hcchhHHHH------HHHHhCcccccc
Confidence 9999999999999999999999999999999999999999999854321100 000000000 000000000000
Q ss_pred HHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCC-CCcccccccccCCCCch
Q 048209 182 EFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFT-GPVNYYRCSDLYVPKTY 260 (349)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 260 (349)
... ....++.. .+.. .....++++....+...+...... ....+++..........
T Consensus 156 ~~~--~~~~~~~~-------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (295)
T PRK03592 156 MVL--EENVFIER-------------------VLPG--SILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPAD 212 (295)
T ss_pred ccc--chhhHHhh-------------------cccC--cccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchh
Confidence 000 00000000 0000 001123444444444333222111 11111111111000000
Q ss_pred hHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHH
Q 048209 261 TMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGA 340 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~ 340 (349)
... . ...... .+.++++|+|+|+|++|.++++....++ +.+..++. ++++++++||+++.|+|+++++
T Consensus 213 ~~~-~-~~~~~~----~l~~i~~P~lii~G~~D~~~~~~~~~~~-----~~~~~~~~-~~~~i~~~gH~~~~e~p~~v~~ 280 (295)
T PRK03592 213 VVA-L-VEEYAQ----WLATSDVPKLLINAEPGAILTTGAIRDW-----CRSWPNQL-EITVFGAGLHFAQEDSPEEIGA 280 (295)
T ss_pred hHh-h-hhHhHH----HhccCCCCeEEEeccCCcccCcHHHHHH-----HHHhhhhc-ceeeccCcchhhhhcCHHHHHH
Confidence 000 0 001111 1338899999999999999966655442 34567788 9999999999999999999999
Q ss_pred HHHHHHHh
Q 048209 341 HIYEFIKK 348 (349)
Q Consensus 341 ~i~~fl~~ 348 (349)
.|.+|+++
T Consensus 281 ~i~~fl~~ 288 (295)
T PRK03592 281 AIAAWLRR 288 (295)
T ss_pred HHHHHHHH
Confidence 99999986
No 4
>PRK00870 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=1.5e-36 Score=251.62 Aligned_cols=273 Identities=24% Similarity=0.389 Sum_probs=176.3
Q ss_pred cceEEEeeCC-----eeEEEEeeCC--CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchH
Q 048209 23 IEHTTVGTNG-----INMHVASIGT--GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTA 95 (349)
Q Consensus 23 ~~~~~~~~~g-----~~~~~~~~g~--~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~ 95 (349)
+..+++++++ .+++|...|+ +|+|||+||++++...|..+++.|.++||+|+++|+||||.|+.+.....++.
T Consensus 19 ~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~ 98 (302)
T PRK00870 19 FAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTY 98 (302)
T ss_pred CCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCH
Confidence 4567888888 8999999885 78999999999999999999999988899999999999999987654346889
Q ss_pred HHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccC
Q 048209 96 LHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQE 175 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
+++++++.+++++++.++++++||||||.+|+.+|.++|++|+++|++++........ . ....... ..+..
T Consensus 99 ~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~-~-~~~~~~~-------~~~~~ 169 (302)
T PRK00870 99 ARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGP-M-PDAFWAW-------RAFSQ 169 (302)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCcccc-c-hHHHhhh-------hcccc
Confidence 9999999999999999999999999999999999999999999999998743221100 0 0000000 00000
Q ss_pred CccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccC
Q 048209 176 PGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLY 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
. .....+...+... .....+.+....+...+..................
T Consensus 170 ~----------~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (302)
T PRK00870 170 Y----------SPVLPVGRLVNGG---------------------TVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPT 218 (302)
T ss_pred c----------CchhhHHHHhhcc---------------------ccccCCHHHHHHhhcccCChhhhcchhhhhhcCCC
Confidence 0 0000000000000 00001111111111100000000000000000000
Q ss_pred CCCchhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCcee---EEEecCCCcccch
Q 048209 256 VPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQE---VVVMEGVAHFINQ 332 (349)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~gH~~~~ 332 (349)
........ .....+. .+.++++|+++|+|++|.++|... .. +.+.+++. + +.+++++||+++.
T Consensus 219 ~~~~~~~~-~~~~~~~-----~l~~i~~P~lii~G~~D~~~~~~~-~~------~~~~~~~~-~~~~~~~i~~~gH~~~~ 284 (302)
T PRK00870 219 SPDDPAVA-ANRAAWA-----VLERWDKPFLTAFSDSDPITGGGD-AI------LQKRIPGA-AGQPHPTIKGAGHFLQE 284 (302)
T ss_pred CCCCcchH-HHHHHHH-----hhhcCCCceEEEecCCCCcccCch-HH------HHhhcccc-cccceeeecCCCccchh
Confidence 00000000 0000111 123899999999999999999755 44 67777776 5 8899999999999
Q ss_pred hcHHHHHHHHHHHHHhC
Q 048209 333 EKAEEVGAHIYEFIKKF 349 (349)
Q Consensus 333 e~~~~~~~~i~~fl~~~ 349 (349)
|+|+++++.|.+||+++
T Consensus 285 e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 285 DSGEELAEAVLEFIRAT 301 (302)
T ss_pred hChHHHHHHHHHHHhcC
Confidence 99999999999999875
No 5
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=5.9e-36 Score=252.45 Aligned_cols=284 Identities=21% Similarity=0.293 Sum_probs=177.7
Q ss_pred eEEEeeCCe-eEEEEeeCCC------CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHH
Q 048209 25 HTTVGTNGI-NMHVASIGTG------PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALH 97 (349)
Q Consensus 25 ~~~~~~~g~-~~~~~~~g~~------~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~ 97 (349)
.+++.++|. +++|...|++ |+|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+.. ..+++++
T Consensus 63 ~~~~~~~g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~-~~~~~~~ 140 (360)
T PLN02679 63 CKKWKWKGEYSINYLVKGSPEVTSSGPPVLLVHGFGASIPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPPG-FSYTMET 140 (360)
T ss_pred CceEEECCceeEEEEEecCcccCCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCCC-ccccHHH
Confidence 456777887 9999999876 9999999999999999999999987 69999999999999987643 3678999
Q ss_pred HHHHHHHHHHHhCCceeEEEEechHHHHHHHHHh-hCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhh-ccC
Q 048209 98 LVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCL-FRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICR-FQE 175 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~-~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 175 (349)
+++++.+++++++.++++|+||||||.+++.++. .+|++|+++|+++++.....................++... ...
T Consensus 141 ~a~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (360)
T PLN02679 141 WAELILDFLEEVVQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQ 220 (360)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhc
Confidence 9999999999999999999999999999999887 47999999999998643221100000000000000000000 001
Q ss_pred CccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccC
Q 048209 176 PGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLY 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
+......+........++.++...... ...++++..+.+........ ....+......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 278 (360)
T PLN02679 221 RGIASALFNRVKQRDNLKNILLSVYGN-------------------KEAVDDELVEIIRGPADDEG---ALDAFVSIVTG 278 (360)
T ss_pred hhhHHHHHHHhcCHHHHHHHHHHhccC-------------------cccCCHHHHHHHHhhccCCC---hHHHHHHHHhc
Confidence 111111111111111222222111000 00112222222211111100 00000000000
Q ss_pred CCCchhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcch-hhhcccccccccCCceeEEEecCCCcccchhc
Q 048209 256 VPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMK-EYIHDGGFKKYVPYLQEVVVMEGVAHFINQEK 334 (349)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~ 334 (349)
.. . .+... .+.++++|||+|+|++|.++|++... .++ +.+.+.+|++ ++++++++||+++.|+
T Consensus 279 ~~-~--------~~~~~----~l~~i~~PtLii~G~~D~~~p~~~~~~~~~--~~l~~~ip~~-~l~~i~~aGH~~~~E~ 342 (360)
T PLN02679 279 PP-G--------PNPIK----LIPRISLPILVLWGDQDPFTPLDGPVGKYF--SSLPSQLPNV-TLYVLEGVGHCPHDDR 342 (360)
T ss_pred CC-C--------CCHHH----HhhhcCCCEEEEEeCCCCCcCchhhHHHHH--HhhhccCCce-EEEEcCCCCCCccccC
Confidence 00 0 00111 12388999999999999999986421 111 1266778998 9999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 048209 335 AEEVGAHIYEFIKK 348 (349)
Q Consensus 335 ~~~~~~~i~~fl~~ 348 (349)
|+++++.|.+||++
T Consensus 343 Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 343 PDLVHEKLLPWLAQ 356 (360)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999975
No 6
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=100.00 E-value=2.5e-35 Score=241.23 Aligned_cols=259 Identities=20% Similarity=0.220 Sum_probs=171.1
Q ss_pred eEEEeeCCeeEEEEee--CC-CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHH
Q 048209 25 HTTVGTNGINMHVASI--GT-GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGD 101 (349)
Q Consensus 25 ~~~~~~~g~~~~~~~~--g~-~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~ 101 (349)
.++++++|.+++|... ++ +++|||+||++++...|.++++.|.+. |+|+++|+||||.|+.+. ..+++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~plvllHG~~~~~~~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~--~~~~~~~~~~~ 80 (276)
T TIGR02240 4 FRTIDLDGQSIRTAVRPGKEGLTPLLIFNGIGANLELVFPFIEALDPD-LEVIAFDVPGVGGSSTPR--HPYRFPGLAKL 80 (276)
T ss_pred EEEeccCCcEEEEEEecCCCCCCcEEEEeCCCcchHHHHHHHHHhccC-ceEEEECCCCCCCCCCCC--CcCcHHHHHHH
Confidence 4678889999999774 33 479999999999999999999999875 999999999999998654 46789999999
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHH
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEE 181 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (349)
+.+++++++.++++|+||||||.+++.+|.++|++|+++|+++++.......... ..... ...+ ..
T Consensus 81 ~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~--~~~~~---------~~~~---~~ 146 (276)
T TIGR02240 81 AARMLDYLDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKP--KVLMM---------MASP---RR 146 (276)
T ss_pred HHHHHHHhCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCch--hHHHH---------hcCc---hh
Confidence 9999999999999999999999999999999999999999999876432110000 00000 0000 00
Q ss_pred HHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchh
Q 048209 182 EFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYT 261 (349)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (349)
.............++.... . ...+....+....... ....+......
T Consensus 147 ~~~~~~~~~~~~~~~~~~~---------------~--------~~~~~~~~~~~~~~~~---~~~~~~~~~~~------- 193 (276)
T TIGR02240 147 YIQPSHGIHIAPDIYGGAF---------------R--------RDPELAMAHASKVRSG---GKLGYYWQLFA------- 193 (276)
T ss_pred hhccccccchhhhhcccee---------------e--------ccchhhhhhhhhcccC---CCchHHHHHHH-------
Confidence 0000000000000000000 0 0000000000000000 00000000000
Q ss_pred HHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHH
Q 048209 262 MAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAH 341 (349)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~ 341 (349)
.........+.++++|+|+|+|++|+++|++.... +.+.+|+. +++++++ ||+++.|+|+++++.
T Consensus 194 -------~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~------l~~~~~~~-~~~~i~~-gH~~~~e~p~~~~~~ 258 (276)
T TIGR02240 194 -------GLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRL------LAWRIPNA-ELHIIDD-GHLFLITRAEAVAPI 258 (276)
T ss_pred -------HcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHH------HHHhCCCC-EEEEEcC-CCchhhccHHHHHHH
Confidence 00000001133889999999999999999887765 67788998 9999986 999999999999999
Q ss_pred HHHHHHh
Q 048209 342 IYEFIKK 348 (349)
Q Consensus 342 i~~fl~~ 348 (349)
|.+|+++
T Consensus 259 i~~fl~~ 265 (276)
T TIGR02240 259 IMKFLAE 265 (276)
T ss_pred HHHHHHH
Confidence 9999975
No 7
>PRK03204 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=4.6e-35 Score=239.89 Aligned_cols=123 Identities=28% Similarity=0.525 Sum_probs=112.4
Q ss_pred cceEEEeeCCeeEEEEeeCCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHH
Q 048209 23 IEHTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDL 102 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~ 102 (349)
++..+++++|.+++|...|++|+|||+||++.+...|..+++.|.+. |+|+++|+||||.|+.+.. ..++.+++++++
T Consensus 14 ~~~~~~~~~~~~i~y~~~G~~~~iv~lHG~~~~~~~~~~~~~~l~~~-~~vi~~D~~G~G~S~~~~~-~~~~~~~~~~~~ 91 (286)
T PRK03204 14 FESRWFDSSRGRIHYIDEGTGPPILLCHGNPTWSFLYRDIIVALRDR-FRCVAPDYLGFGLSERPSG-FGYQIDEHARVI 91 (286)
T ss_pred ccceEEEcCCcEEEEEECCCCCEEEEECCCCccHHHHHHHHHHHhCC-cEEEEECCCCCCCCCCCCc-cccCHHHHHHHH
Confidence 56678999999999999999999999999999999999999999874 9999999999999987543 357889999999
Q ss_pred HHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 103 IGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 103 ~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
.+++++++.++++++||||||.+++.++..+|++|+++|++++..
T Consensus 92 ~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~ 136 (286)
T PRK03204 92 GEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWF 136 (286)
T ss_pred HHHHHHhCCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccc
Confidence 999999999999999999999999999999999999999987653
No 8
>PLN02578 hydrolase
Probab=100.00 E-value=7.6e-34 Score=239.48 Aligned_cols=121 Identities=22% Similarity=0.360 Sum_probs=111.7
Q ss_pred eEEEeeCCeeEEEEeeCCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHH
Q 048209 25 HTTVGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIG 104 (349)
Q Consensus 25 ~~~~~~~g~~~~~~~~g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~ 104 (349)
..+++.+|.+++|...|++|+|||+||++++...|..+++.|++. |+|+++|+||||.|+++. ..++.+.+++++.+
T Consensus 68 ~~~~~~~~~~i~Y~~~g~g~~vvliHG~~~~~~~w~~~~~~l~~~-~~v~~~D~~G~G~S~~~~--~~~~~~~~a~~l~~ 144 (354)
T PLN02578 68 YNFWTWRGHKIHYVVQGEGLPIVLIHGFGASAFHWRYNIPELAKK-YKVYALDLLGFGWSDKAL--IEYDAMVWRDQVAD 144 (354)
T ss_pred ceEEEECCEEEEEEEcCCCCeEEEECCCCCCHHHHHHHHHHHhcC-CEEEEECCCCCCCCCCcc--cccCHHHHHHHHHH
Confidence 466788999999999999999999999999999999999999874 999999999999998765 56889999999999
Q ss_pred HHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 105 LLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 105 ~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
+++.++.++++++|||+||.+++.+|.++|++|+++|+++++..
T Consensus 145 ~i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~ 188 (354)
T PLN02578 145 FVKEVVKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQ 188 (354)
T ss_pred HHHHhccCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCcc
Confidence 99999989999999999999999999999999999999987643
No 9
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=100.00 E-value=5.8e-34 Score=242.93 Aligned_cols=126 Identities=25% Similarity=0.426 Sum_probs=108.3
Q ss_pred cceEEEeeCCeeEEEEeeCC-----CCeEEEEccCCCchhhHHH-HHHHHh---hCCceEEeeCCCCCCCCCCCCCCCcc
Q 048209 23 IEHTTVGTNGINMHVASIGT-----GPVVLFIHGFPELWYSWRN-QLLYLS---SRGYRAIAPDLRGYGDTDAPPSVTSY 93 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g~-----~~~iv~~hG~~~~~~~~~~-~~~~L~---~~G~~v~~~D~~G~G~s~~~~~~~~~ 93 (349)
....+.+.+|.+++|...|+ +|+|||+||++++...|.. +++.|. +.+|+|+++|+||||.|+.+.. ..+
T Consensus 176 ~~~~~~~~~~~~l~~~~~gp~~~~~k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~-~~y 254 (481)
T PLN03087 176 FCTSWLSSSNESLFVHVQQPKDNKAKEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPAD-SLY 254 (481)
T ss_pred eeeeeEeeCCeEEEEEEecCCCCCCCCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCC-CcC
Confidence 34566777889999999885 3799999999999999985 446665 3689999999999999987642 458
Q ss_pred hHHHHHHHHH-HHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 94 TALHLVGDLI-GLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
+++++++++. .+++.++.++++++||||||++++.+|.++|++|+++|+++++...
T Consensus 255 tl~~~a~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~ 311 (481)
T PLN03087 255 TLREHLEMIERSVLERYKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYP 311 (481)
T ss_pred CHHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccc
Confidence 8999999994 8999999999999999999999999999999999999999986543
No 10
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=100.00 E-value=5.9e-34 Score=234.56 Aligned_cols=260 Identities=21% Similarity=0.268 Sum_probs=161.6
Q ss_pred CeeEEEEeeCCCCeEEEEccCCCchhhHHHH---HHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 048209 32 GINMHVASIGTGPVVLFIHGFPELWYSWRNQ---LLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK 108 (349)
Q Consensus 32 g~~~~~~~~g~~~~iv~~hG~~~~~~~~~~~---~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~ 108 (349)
|.+++|...|++|+|||+||++.+...|..+ +..|.+.||+|+++|+||||.|+........+ ...++++.++++.
T Consensus 19 ~~~~~y~~~g~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~-~~~~~~l~~~l~~ 97 (282)
T TIGR03343 19 NFRIHYNEAGNGEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRG-LVNARAVKGLMDA 97 (282)
T ss_pred ceeEEEEecCCCCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCccccc-chhHHHHHHHHHH
Confidence 5779999999999999999999888777643 45666778999999999999998653211222 2568999999999
Q ss_pred hCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCC-CccccchhhcccchhhhhccCCccHHHHHhccc
Q 048209 109 LGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAV-RPLNNFRAVYGDDYYICRFQEPGEIEEEFAQID 187 (349)
Q Consensus 109 ~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (349)
++.++++++||||||.+++.+|.++|++++++|+++++........ ......... ......+
T Consensus 98 l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----------- 160 (282)
T TIGR03343 98 LDIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLL------FKLYAEP----------- 160 (282)
T ss_pred cCCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHH------HHHhcCC-----------
Confidence 9999999999999999999999999999999999997532111000 000000000 0000000
Q ss_pred hHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHH
Q 048209 188 TARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIK 267 (349)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (349)
.......++...... ....+.+..+.......... .....+............
T Consensus 161 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------- 213 (282)
T TIGR03343 161 SYETLKQMLNVFLFD-------------------QSLITEELLQGRWENIQRQP-EHLKNFLISSQKAPLSTW------- 213 (282)
T ss_pred CHHHHHHHHhhCccC-------------------cccCcHHHHHhHHHHhhcCH-HHHHHHHHhccccccccc-------
Confidence 000011111100000 00011111111000000000 000000000000000000
Q ss_pred hhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHH
Q 048209 268 ENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIK 347 (349)
Q Consensus 268 ~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~ 347 (349)
.... .+.++++|+|+++|++|.+++++.+.+ +.+..|+. ++++++++||+++.|+|+++.+.|.+||+
T Consensus 214 -~~~~----~l~~i~~Pvlli~G~~D~~v~~~~~~~------~~~~~~~~-~~~~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 214 -DVTA----RLGEIKAKTLVTWGRDDRFVPLDHGLK------LLWNMPDA-QLHVFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred -hHHH----HHhhCCCCEEEEEccCCCcCCchhHHH------HHHhCCCC-EEEEeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 0111 123899999999999999999887765 67788998 99999999999999999999999999996
Q ss_pred h
Q 048209 348 K 348 (349)
Q Consensus 348 ~ 348 (349)
+
T Consensus 282 ~ 282 (282)
T TIGR03343 282 N 282 (282)
T ss_pred C
Confidence 3
No 11
>PLN02965 Probable pheophorbidase
Probab=100.00 E-value=8.9e-34 Score=229.20 Aligned_cols=244 Identities=15% Similarity=0.176 Sum_probs=156.9
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCC-ceeEEEEechHH
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGI-HQVFLVGHDWGA 123 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lvG~S~Gg 123 (349)
+|||+||++.+...|..+++.|.+.||+|+++|+||||.|+.+.. ..++.+++++|+.++++.++. ++++++||||||
T Consensus 5 ~vvllHG~~~~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~-~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG 83 (255)
T PLN02965 5 HFVFVHGASHGAWCWYKLATLLDAAGFKSTCVDLTGAGISLTDSN-TVSSSDQYNRPLFALLSDLPPDHKVILVGHSIGG 83 (255)
T ss_pred EEEEECCCCCCcCcHHHHHHHHhhCCceEEEecCCcCCCCCCCcc-ccCCHHHHHHHHHHHHHhcCCCCCEEEEecCcch
Confidence 599999999999999999999988789999999999999976542 367899999999999999987 499999999999
Q ss_pred HHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccc-hhhhh-c-cCCccHHHHHhccchHHHHHHHhhhhc
Q 048209 124 LIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDD-YYICR-F-QEPGEIEEEFAQIDTARLMKKFLCLRI 200 (349)
Q Consensus 124 ~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
.+++.+|.++|++|+++|++++........ ............ ..... . .......... ..........+..
T Consensus 84 ~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-- 157 (255)
T PLN02965 84 GSVTEALCKFTDKISMAIYVAAAMVKPGSI--ISPRLKNVMEGTEKIWDYTFGEGPDKPPTGI--MMKPEFVRHYYYN-- 157 (255)
T ss_pred HHHHHHHHhCchheeEEEEEccccCCCCCC--ccHHHHhhhhccccceeeeeccCCCCCcchh--hcCHHHHHHHHhc--
Confidence 999999999999999999999864321110 000000000000 00000 0 0000000000 0000000000000
Q ss_pred cCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHHhhhhhccCCCCcc
Q 048209 201 AKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTGVQ 280 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 280 (349)
....+................ ..... ... ..+..
T Consensus 158 -----------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~---------------~~~----~~~~~ 191 (255)
T PLN02965 158 -----------------------QSPLEDYTLSSKLLRPAPVRA----FQDLD---------------KLP----PNPEA 191 (255)
T ss_pred -----------------------CCCHHHHHHHHHhcCCCCCcc----hhhhh---------------hcc----chhhc
Confidence 000000000011111100000 00000 011 11226
Q ss_pred cCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHHh
Q 048209 281 IEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIKK 348 (349)
Q Consensus 281 i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~~ 348 (349)
+++|+++|+|++|.++|++..+. +++.+|++ ++++++++||+++.|+|++|++.|.+|+++
T Consensus 192 i~vP~lvi~g~~D~~~~~~~~~~------~~~~~~~a-~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 192 EKVPRVYIKTAKDNLFDPVRQDV------MVENWPPA-QTYVLEDSDHSAFFSVPTTLFQYLLQAVSS 252 (255)
T ss_pred CCCCEEEEEcCCCCCCCHHHHHH------HHHhCCcc-eEEEecCCCCchhhcCHHHHHHHHHHHHHH
Confidence 89999999999999999877655 78899999 999999999999999999999999999875
No 12
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=100.00 E-value=1.1e-32 Score=226.84 Aligned_cols=266 Identities=24% Similarity=0.345 Sum_probs=173.6
Q ss_pred eEEEeeCCeeEEEEeeCC--CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHH
Q 048209 25 HTTVGTNGINMHVASIGT--GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDL 102 (349)
Q Consensus 25 ~~~~~~~g~~~~~~~~g~--~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~ 102 (349)
.++++++|.+++|...|+ +|+|||+||++++...|..+++.|++ +|+|+++|+||||.|+.+.. ..++++++++++
T Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~vv~~hG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~-~~~~~~~~~~~l 85 (278)
T TIGR03056 8 SRRVTVGPFHWHVQDMGPTAGPLLLLLHGTGASTHSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFR-FRFTLPSMAEDL 85 (278)
T ss_pred cceeeECCEEEEEEecCCCCCCeEEEEcCCCCCHHHHHHHHHHHhh-CcEEEeecCCCCCCCCCccc-cCCCHHHHHHHH
Confidence 467788999999999986 78999999999999999999999987 59999999999999987653 367999999999
Q ss_pred HHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCcc-ccchhhcccchhhhhccCCccHHH
Q 048209 103 IGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPL-NNFRAVYGDDYYICRFQEPGEIEE 181 (349)
Q Consensus 103 ~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 181 (349)
.+++++++.++++++||||||++++.+|.++|++++++|++++............ ....... ...+... .
T Consensus 86 ~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~ 156 (278)
T TIGR03056 86 SALCAAEGLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVL--------ACNPFTP-P 156 (278)
T ss_pred HHHHHHcCCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhh--------hhcccch-H
Confidence 9999999989999999999999999999999999999999998654221100000 0000000 0000000 0
Q ss_pred HHhcc-chHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCC-CCCCcccccccccCCCCc
Q 048209 182 EFAQI-DTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKG-FTGPVNYYRCSDLYVPKT 259 (349)
Q Consensus 182 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 259 (349)
..... .....+..++.. . ....+......+........ .............
T Consensus 157 ~~~~~~~~~~~~~~~~~~-------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 209 (278)
T TIGR03056 157 MMSRGAADQQRVERLIRD-------------------T---GSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDL----- 209 (278)
T ss_pred HHHhhcccCcchhHHhhc-------------------c---ccccccchhhHHHHhhcCchhhhHHHHHhhcccc-----
Confidence 00000 000000000000 0 00001111111111110000 0000000000000
Q ss_pred hhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHH
Q 048209 260 YTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVG 339 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~ 339 (349)
.... ..+.++++|+++|+|++|.++|++.... +.+.+++. ++++++++||+++.|+|++++
T Consensus 210 --------~~~~----~~~~~i~~P~lii~g~~D~~vp~~~~~~------~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~ 270 (278)
T TIGR03056 210 --------APLN----RDLPRITIPLHLIAGEEDKAVPPDESKR------AATRVPTA-TLHVVPGGGHLVHEEQADGVV 270 (278)
T ss_pred --------cchh----hhcccCCCCEEEEEeCCCcccCHHHHHH------HHHhccCC-eEEEECCCCCcccccCHHHHH
Confidence 0001 1133789999999999999999887665 66778888 999999999999999999999
Q ss_pred HHHHHHHH
Q 048209 340 AHIYEFIK 347 (349)
Q Consensus 340 ~~i~~fl~ 347 (349)
+.|.+|++
T Consensus 271 ~~i~~f~~ 278 (278)
T TIGR03056 271 GLILQAAE 278 (278)
T ss_pred HHHHHHhC
Confidence 99999985
No 13
>PRK10349 carboxylesterase BioH; Provisional
Probab=100.00 E-value=5.5e-33 Score=225.18 Aligned_cols=252 Identities=17% Similarity=0.196 Sum_probs=156.6
Q ss_pred eEEEEeeCCCC-eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCc
Q 048209 34 NMHVASIGTGP-VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIH 112 (349)
Q Consensus 34 ~~~~~~~g~~~-~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (349)
.++|...|+++ +|||+||++++...|..+++.|.+. |+|+++|+||||.|.... .++.+++++++.+ ++.+
T Consensus 3 ~~~y~~~G~g~~~ivllHG~~~~~~~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~---~~~~~~~~~~l~~----~~~~ 74 (256)
T PRK10349 3 NIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSH-FTLHLVDLPGFGRSRGFG---ALSLADMAEAVLQ----QAPD 74 (256)
T ss_pred ccchhhcCCCCCeEEEECCCCCChhHHHHHHHHHhcC-CEEEEecCCCCCCCCCCC---CCCHHHHHHHHHh----cCCC
Confidence 36788888875 6999999999999999999999876 999999999999997543 4677777776653 4668
Q ss_pred eeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHHHH
Q 048209 113 QVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLM 192 (349)
Q Consensus 113 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
+++++||||||.+|+.+|.++|++|+++|++++........... ....... .. ....+. ......+
T Consensus 75 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~-~~~~~~~------~~------~~~~~~-~~~~~~~ 140 (256)
T PRK10349 75 KAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWP-GIKPDVL------AG------FQQQLS-DDFQRTV 140 (256)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCC-cccHHHH------HH------HHHHHH-hchHHHH
Confidence 99999999999999999999999999999998753321110000 0000000 00 000000 0001111
Q ss_pred HHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHHhhhhh
Q 048209 193 KKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWEL 272 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (349)
..++........ ... .....+........... ..... .....+...+..
T Consensus 141 ~~~~~~~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~- 189 (256)
T PRK10349 141 ERFLALQTMGTE-------------------TAR-QDARALKKTVLALPMPE----VDVLN------GGLEILKTVDLR- 189 (256)
T ss_pred HHHHHHHHccCc-------------------hHH-HHHHHHHHHhhccCCCc----HHHHH------HHHHHHHhCccH-
Confidence 222111000000 000 00111111100000000 00000 000000000111
Q ss_pred ccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHHh
Q 048209 273 MAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIKK 348 (349)
Q Consensus 273 ~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~~ 348 (349)
..+.++++||++|+|++|.++|.+.... +.+.++++ ++++++++||+++.|+|++|++.+.+|-++
T Consensus 190 ---~~l~~i~~P~lii~G~~D~~~~~~~~~~------~~~~i~~~-~~~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 190 ---QPLQNVSMPFLRLYGYLDGLVPRKVVPM------LDKLWPHS-ESYIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred ---HHHhhcCCCeEEEecCCCccCCHHHHHH------HHHhCCCC-eEEEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 1233899999999999999998876654 67888999 999999999999999999999999998654
No 14
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=100.00 E-value=4.1e-32 Score=229.04 Aligned_cols=125 Identities=22% Similarity=0.281 Sum_probs=105.8
Q ss_pred cceEEEeeCCeeEEEEeeCC-----CCeEEEEccCCCchhh-HHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHH
Q 048209 23 IEHTTVGTNGINMHVASIGT-----GPVVLFIHGFPELWYS-WRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTAL 96 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g~-----~~~iv~~hG~~~~~~~-~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~ 96 (349)
.+..+++.+|.+++|..+++ +++|||+||++++... |..+++.|+++||+|+++|+||||.|+.... ...+++
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-~~~~~~ 140 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLHG-YIPSFD 140 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCC-CcCCHH
Confidence 34456667999999998764 4689999999988664 6889999998899999999999999986532 235788
Q ss_pred HHHHHHHHHHHHhCCc------eeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 97 HLVGDLIGLLDKLGIH------QVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~------~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
++++|+.++++.+..+ +++|+||||||++++.++.++|++++++|++++...
T Consensus 141 ~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~ 198 (349)
T PLN02385 141 DLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCK 198 (349)
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccccc
Confidence 9999999999887542 799999999999999999999999999999998654
No 15
>PRK06489 hypothetical protein; Provisional
Probab=100.00 E-value=8.7e-33 Score=233.77 Aligned_cols=119 Identities=25% Similarity=0.366 Sum_probs=100.1
Q ss_pred eeCCeeEEEEeeCC---------CCeEEEEccCCCchhhHH--HHHHHH-------hhCCceEEeeCCCCCCCCCCCCCC
Q 048209 29 GTNGINMHVASIGT---------GPVVLFIHGFPELWYSWR--NQLLYL-------SSRGYRAIAPDLRGYGDTDAPPSV 90 (349)
Q Consensus 29 ~~~g~~~~~~~~g~---------~~~iv~~hG~~~~~~~~~--~~~~~L-------~~~G~~v~~~D~~G~G~s~~~~~~ 90 (349)
+.+|.+++|...|+ +|+|||+||++++...|. .+.+.| ..++|+|+++|+||||.|+.+...
T Consensus 46 ~~~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~ 125 (360)
T PRK06489 46 TLPELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDG 125 (360)
T ss_pred CcCCceEEEEecCCCCcccccCCCCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcC
Confidence 46789999999987 689999999999988886 455444 134699999999999999865421
Q ss_pred -----CcchHHHHHHHHHHHH-HHhCCceeE-EEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 91 -----TSYTALHLVGDLIGLL-DKLGIHQVF-LVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 91 -----~~~~~~~~~~~~~~~~-~~~~~~~~~-lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
..++++++++++.+++ ++++.++++ ++||||||++|+.+|.++|++|+++|++++..
T Consensus 126 ~~~~~~~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~ 189 (360)
T PRK06489 126 LRAAFPRYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQP 189 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCc
Confidence 2478999999988855 889999985 89999999999999999999999999998753
No 16
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=100.00 E-value=4.7e-32 Score=227.23 Aligned_cols=271 Identities=25% Similarity=0.358 Sum_probs=173.3
Q ss_pred eEEEeeCCeeEEEEeeCC--CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCC--CcchHHHHHH
Q 048209 25 HTTVGTNGINMHVASIGT--GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSV--TSYTALHLVG 100 (349)
Q Consensus 25 ~~~~~~~g~~~~~~~~g~--~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~--~~~~~~~~~~ 100 (349)
...++.+|.+++|...|+ +|+|||+||++.+...|+.+++.|++ +|+|+++|+||||.|+.+... ..++++++++
T Consensus 107 ~~~~~~~~~~~~y~~~G~~~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~ 185 (383)
T PLN03084 107 QSQASSDLFRWFCVESGSNNNPPVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVS 185 (383)
T ss_pred eeEEcCCceEEEEEecCCCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCcccccccCCHHHHHH
Confidence 446778999999999985 68999999999999999999999986 699999999999999876531 3589999999
Q ss_pred HHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHH
Q 048209 101 DLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIE 180 (349)
Q Consensus 101 ~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (349)
++.+++++++.++++|+|||+||++++.+|.++|++|+++|+++++........ ...+... ... ...
T Consensus 186 ~l~~~i~~l~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~--p~~l~~~----------~~~-l~~ 252 (383)
T PLN03084 186 SLESLIDELKSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKL--PSTLSEF----------SNF-LLG 252 (383)
T ss_pred HHHHHHHHhCCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccc--hHHHHHH----------HHH-Hhh
Confidence 999999999999999999999999999999999999999999998653211000 0000000 000 000
Q ss_pred HHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCC-CCcc-cccccccCCCC
Q 048209 181 EEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFT-GPVN-YYRCSDLYVPK 258 (349)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~ 258 (349)
..+.. .........+.. ......+++....+...+...... .... .++.+.... .
T Consensus 253 ~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l-~ 309 (383)
T PLN03084 253 EIFSQ-DPLRASDKALTS---------------------CGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKEL-K 309 (383)
T ss_pred hhhhc-chHHHHhhhhcc---------------------cCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhccc-c
Confidence 00000 000000000000 000111222222222222111000 0000 000000000 0
Q ss_pred chhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHH
Q 048209 259 TYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEV 338 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~ 338 (349)
. . .+...... ...++++|+++|+|++|.+++++...+ +.+. ++. ++.+++++||+++.|+|+++
T Consensus 310 ~-----~-~~~l~~~l--~~~~i~vPvLiI~G~~D~~v~~~~~~~------~a~~-~~a-~l~vIp~aGH~~~~E~Pe~v 373 (383)
T PLN03084 310 K-----Y-IEEMRSIL--TDKNWKTPITVCWGLRDRWLNYDGVED------FCKS-SQH-KLIELPMAGHHVQEDCGEEL 373 (383)
T ss_pred h-----h-hHHHHhhh--ccccCCCCEEEEeeCCCCCcCHHHHHH------HHHh-cCC-eEEEECCCCCCcchhCHHHH
Confidence 0 0 00000000 002689999999999999999876655 3444 467 99999999999999999999
Q ss_pred HHHHHHHHHh
Q 048209 339 GAHIYEFIKK 348 (349)
Q Consensus 339 ~~~i~~fl~~ 348 (349)
++.|.+||.+
T Consensus 374 ~~~I~~Fl~~ 383 (383)
T PLN03084 374 GGIISGILSK 383 (383)
T ss_pred HHHHHHHhhC
Confidence 9999999864
No 17
>PRK10749 lysophospholipase L2; Provisional
Probab=100.00 E-value=1.6e-31 Score=223.41 Aligned_cols=126 Identities=19% Similarity=0.211 Sum_probs=109.6
Q ss_pred cceEEEeeCCeeEEEEeeCC---CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCC----CcchH
Q 048209 23 IEHTTVGTNGINMHVASIGT---GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSV----TSYTA 95 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g~---~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~----~~~~~ 95 (349)
.+..++..+|.+++|...++ +++||++||++.+...|..++..|.++||+|+++|+||||.|+..... ...++
T Consensus 31 ~~~~~~~~~g~~l~~~~~~~~~~~~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~ 110 (330)
T PRK10749 31 EEAEFTGVDDIPIRFVRFRAPHHDRVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGHVERF 110 (330)
T ss_pred cceEEEcCCCCEEEEEEccCCCCCcEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCccccH
Confidence 55677778999999998763 578999999999999999999999999999999999999999764321 22578
Q ss_pred HHHHHHHHHHHHHh----CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 96 LHLVGDLIGLLDKL----GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 96 ~~~~~~~~~~~~~~----~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
+++++|+.++++.+ +..+++++||||||.+++.++.++|+.++++|+++|...
T Consensus 111 ~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~ 167 (330)
T PRK10749 111 NDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFG 167 (330)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhc
Confidence 99999999999887 567999999999999999999999999999999988654
No 18
>PRK10673 acyl-CoA esterase; Provisional
Probab=100.00 E-value=1.3e-31 Score=217.31 Aligned_cols=239 Identities=18% Similarity=0.238 Sum_probs=156.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechH
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWG 122 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~G 122 (349)
+|+|||+||++++...|..++..|.+ +|+|+++|+||||.|.... .++++++++|+.+++++++.++++++|||||
T Consensus 16 ~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~~---~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~G 91 (255)
T PRK10673 16 NSPIVLVHGLFGSLDNLGVLARDLVN-DHDIIQVDMRNHGLSPRDP---VMNYPAMAQDLLDTLDALQIEKATFIGHSMG 91 (255)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHhh-CCeEEEECCCCCCCCCCCC---CCCHHHHHHHHHHHHHHcCCCceEEEEECHH
Confidence 68999999999999999999999987 5999999999999998653 5789999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHHHHHHHhhhhccC
Q 048209 123 ALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIAK 202 (349)
Q Consensus 123 g~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (349)
|.+++.+|.++|++|+++|++++....... ......+. ....... ............+...
T Consensus 92 g~va~~~a~~~~~~v~~lvli~~~~~~~~~-----~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~--- 152 (255)
T PRK10673 92 GKAVMALTALAPDRIDKLVAIDIAPVDYHV-----RRHDEIFA---AINAVSE--------AGATTRQQAAAIMRQH--- 152 (255)
T ss_pred HHHHHHHHHhCHhhcceEEEEecCCCCccc-----hhhHHHHH---HHHHhhh--------cccccHHHHHHHHHHh---
Confidence 999999999999999999999864322110 00000000 0000000 0000000000000000
Q ss_pred CCCCccCcCCCCCCCCCCCCCCCChhhHHHHH-HhccCCCCCCCcccccccccCCCCchhHHHHHHhhhhhccCCCCccc
Q 048209 203 PLCIPKDTGLSTVPDPSALPSWLSEEDVNYYA-SKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTGVQI 281 (349)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 281 (349)
+..+....+. ..+........ ................+..+
T Consensus 153 ----------------------~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 194 (255)
T PRK10673 153 ----------------------LNEEGVIQFLLKSFVDGEWRFN----------------VPVLWDQYPHIVGWEKIPAW 194 (255)
T ss_pred ----------------------cCCHHHHHHHHhcCCcceeEee----------------HHHHHHhHHHHhCCcccCCC
Confidence 0001111111 11000000000 00000000000000112378
Q ss_pred CCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHHhC
Q 048209 282 EVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349 (349)
Q Consensus 282 ~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~~~ 349 (349)
++|+|+|+|++|..++++.... +.+.+|+. ++.+++++||+++.|+|+++.+.|.+||+++
T Consensus 195 ~~P~l~i~G~~D~~~~~~~~~~------~~~~~~~~-~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~~ 255 (255)
T PRK10673 195 PHPALFIRGGNSPYVTEAYRDD------LLAQFPQA-RAHVIAGAGHWVHAEKPDAVLRAIRRYLNDK 255 (255)
T ss_pred CCCeEEEECCCCCCCCHHHHHH------HHHhCCCc-EEEEeCCCCCeeeccCHHHHHHHHHHHHhcC
Confidence 9999999999999999876655 67888998 9999999999999999999999999999864
No 19
>PHA02857 monoglyceride lipase; Provisional
Probab=100.00 E-value=7.5e-31 Score=215.08 Aligned_cols=257 Identities=16% Similarity=0.167 Sum_probs=160.9
Q ss_pred EEEeeCCeeEEEEeeCC----CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHH
Q 048209 26 TTVGTNGINMHVASIGT----GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGD 101 (349)
Q Consensus 26 ~~~~~~g~~~~~~~~g~----~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~ 101 (349)
.++..||.+++|..+.+ .+.|+++||++.++..|..+++.|.+.||.|+++|+||||.|+.... ...++.++++|
T Consensus 4 ~~~~~~g~~l~~~~~~~~~~~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~-~~~~~~~~~~d 82 (276)
T PHA02857 4 CMFNLDNDYIYCKYWKPITYPKALVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNGEKM-MIDDFGVYVRD 82 (276)
T ss_pred eeecCCCCEEEEEeccCCCCCCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCCCCCCCCCccC-CcCCHHHHHHH
Confidence 56777999999987654 45677779999999999999999999999999999999999976431 22356667777
Q ss_pred HHHHHHHh----CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCc
Q 048209 102 LIGLLDKL----GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPG 177 (349)
Q Consensus 102 ~~~~~~~~----~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
+.+.++.+ +..+++|+||||||++|+.+|.++|+.++++|++++....... .....
T Consensus 83 ~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~------~~~~~-------------- 142 (276)
T PHA02857 83 VVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAV------PRLNL-------------- 142 (276)
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccc------cHHHH--------------
Confidence 77777654 3458999999999999999999999999999999985432100 00000
Q ss_pred cHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCC
Q 048209 178 EIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVP 257 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
.......... .. .. ...+ ...++.+.................. ..
T Consensus 143 ----------~~~~~~~~~~---~~-~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 187 (276)
T PHA02857 143 ----------LAAKLMGIFY---PN-KI------VGKL-----CPESVSRDMDEVYKYQYDPLVNHEK----------IK 187 (276)
T ss_pred ----------HHHHHHHHhC---CC-Cc------cCCC-----CHhhccCCHHHHHHHhcCCCccCCC----------cc
Confidence 0000000000 00 00 0000 0001111111111000000000000 00
Q ss_pred CchhHHHHH-HhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhccccccccc-CCceeEEEecCCCcccchhcH
Q 048209 258 KTYTMAIII-KENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYV-PYLQEVVVMEGVAHFINQEKA 335 (349)
Q Consensus 258 ~~~~~~~~~-~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gH~~~~e~~ 335 (349)
......... ....... +.++++|+|+++|++|.++|++.+.+ +.+.+ +++ ++.+++++||.++.|.+
T Consensus 188 ~~~~~~~~~~~~~~~~~----l~~i~~Pvliv~G~~D~i~~~~~~~~------l~~~~~~~~-~~~~~~~~gH~~~~e~~ 256 (276)
T PHA02857 188 AGFASQVLKATNKVRKI----IPKIKTPILILQGTNNEISDVSGAYY------FMQHANCNR-EIKIYEGAKHHLHKETD 256 (276)
T ss_pred HHHHHHHHHHHHHHHHh----cccCCCCEEEEecCCCCcCChHHHHH------HHHHccCCc-eEEEeCCCcccccCCch
Confidence 000000000 0111122 33889999999999999999998876 34443 456 99999999999998854
Q ss_pred ---HHHHHHHHHHHHhC
Q 048209 336 ---EEVGAHIYEFIKKF 349 (349)
Q Consensus 336 ---~~~~~~i~~fl~~~ 349 (349)
+++.+.+.+||+++
T Consensus 257 ~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 257 EVKKSVMKEIETWIFNR 273 (276)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 67999999999863
No 20
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.98 E-value=2.1e-31 Score=214.40 Aligned_cols=100 Identities=23% Similarity=0.235 Sum_probs=90.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechH
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWG 122 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~G 122 (349)
+|+|||+||++++...|..+++.| + +|+|+++|+||||.|..+. ..+++++++++.++++.++.++++++|||||
T Consensus 2 ~p~vvllHG~~~~~~~w~~~~~~l-~-~~~vi~~D~~G~G~S~~~~---~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~G 76 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQPVGEAL-P-DYPRLYIDLPGHGGSAAIS---VDGFADVSRLLSQTLQSYNILPYWLVGYSLG 76 (242)
T ss_pred CCEEEEECCCCCChHHHHHHHHHc-C-CCCEEEecCCCCCCCCCcc---ccCHHHHHHHHHHHHHHcCCCCeEEEEECHH
Confidence 578999999999999999999988 3 5999999999999998754 3488999999999999999999999999999
Q ss_pred HHHHHHHHhhCccc-cceeeeeccCC
Q 048209 123 ALIAWYFCLFRPDR-VKALVNMSVPF 147 (349)
Q Consensus 123 g~ia~~~a~~~p~~-v~~lvl~~~~~ 147 (349)
|.+|+.+|.++|+. |+++|++++..
T Consensus 77 g~va~~~a~~~~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 77 GRIAMYYACQGLAGGLCGLIVEGGNP 102 (242)
T ss_pred HHHHHHHHHhCCcccccEEEEeCCCC
Confidence 99999999999765 99999988654
No 21
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.98 E-value=4e-31 Score=214.92 Aligned_cols=250 Identities=22% Similarity=0.305 Sum_probs=160.1
Q ss_pred EEEEeeCC----CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhC
Q 048209 35 MHVASIGT----GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLG 110 (349)
Q Consensus 35 ~~~~~~g~----~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (349)
++|...|+ +|+|||+||+++++..|..+++.|.+ ||+|+++|+||||.|..... ..++++++++++.++++.++
T Consensus 1 ~~~~~~~~~~~~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~-~~~~~~~~~~~~~~~i~~~~ 78 (257)
T TIGR03611 1 MHYELHGPPDADAPVVVLSSGLGGSGSYWAPQLDVLTQ-RFHVVTYDHRGTGRSPGELP-PGYSIAHMADDVLQLLDALN 78 (257)
T ss_pred CEEEEecCCCCCCCEEEEEcCCCcchhHHHHHHHHHHh-ccEEEEEcCCCCCCCCCCCc-ccCCHHHHHHHHHHHHHHhC
Confidence 35666663 68999999999999999999988876 69999999999999986542 56789999999999999999
Q ss_pred CceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHH
Q 048209 111 IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTAR 190 (349)
Q Consensus 111 ~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
.++++++||||||++|+.++.++|++++++|++++......... ...... ...+.......
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~---~~~~~~----------------~~~~~~~~~~~ 139 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTR---RCFDVR----------------IALLQHAGPEA 139 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHH---HHHHHH----------------HHHHhccCcch
Confidence 99999999999999999999999999999999987543211000 000000 00000000000
Q ss_pred HHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCCh---hhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHH
Q 048209 191 LMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSE---EDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIK 267 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (349)
+......... ...++.. ........... ............ .
T Consensus 140 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------------~ 183 (257)
T TIGR03611 140 YVHAQALFLY--------------------PADWISENAARLAADEAHALA--HFPGKANVLRRI--------------N 183 (257)
T ss_pred hhhhhhhhhc--------------------cccHhhccchhhhhhhhhccc--ccCccHHHHHHH--------------H
Confidence 0000000000 0000000 00000000000 000000000000 0
Q ss_pred hhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHH
Q 048209 268 ENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIK 347 (349)
Q Consensus 268 ~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~ 347 (349)
..........+.++++|+++++|++|.++|++.+.. +.+..++. +++.++++||+++.++|+++.+.|.+||+
T Consensus 184 ~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~------~~~~~~~~-~~~~~~~~gH~~~~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 184 ALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLR------LAAALPNA-QLKLLPYGGHASNVTDPETFNRALLDFLK 256 (257)
T ss_pred HHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHH------HHHhcCCc-eEEEECCCCCCccccCHHHHHHHHHHHhc
Confidence 000000011233789999999999999999887765 56677888 99999999999999999999999999996
Q ss_pred h
Q 048209 348 K 348 (349)
Q Consensus 348 ~ 348 (349)
+
T Consensus 257 ~ 257 (257)
T TIGR03611 257 T 257 (257)
T ss_pred C
Confidence 4
No 22
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.98 E-value=1.7e-31 Score=224.65 Aligned_cols=122 Identities=25% Similarity=0.380 Sum_probs=101.6
Q ss_pred cceEEEeeCCeeEEEEeeCC-CCeEEEEccCCCchh------------hHHHHHH---HHhhCCceEEeeCCCCCCCCCC
Q 048209 23 IEHTTVGTNGINMHVASIGT-GPVVLFIHGFPELWY------------SWRNQLL---YLSSRGYRAIAPDLRGYGDTDA 86 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g~-~~~iv~~hG~~~~~~------------~~~~~~~---~L~~~G~~v~~~D~~G~G~s~~ 86 (349)
......+.+|.+++|...|+ ++++||+||++++.. .|..++. .|...+|+|+++|+||||.|..
T Consensus 36 ~~~~~~~~~~~~l~y~~~G~~~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~ 115 (343)
T PRK08775 36 LSMRHAGLEDLRLRYELIGPAGAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLD 115 (343)
T ss_pred eeecCCCCCCceEEEEEeccCCCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCC
Confidence 44555666899999999996 767888877776655 6888886 5744469999999999998842
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhCCcee-EEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 87 PPSVTSYTALHLVGDLIGLLDKLGIHQV-FLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
..++.+++++|+.+++++++.++. +|+||||||++|+.+|.++|++|+++|++++...
T Consensus 116 ----~~~~~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~~ 174 (343)
T PRK08775 116 ----VPIDTADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAHR 174 (343)
T ss_pred ----CCCCHHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChHhhheEEEECcccc
Confidence 346788999999999999999775 7999999999999999999999999999998643
No 23
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.97 E-value=2.7e-30 Score=216.83 Aligned_cols=124 Identities=17% Similarity=0.324 Sum_probs=102.3
Q ss_pred ceEEEeeCCeeEEEEeeCC------CCeEEEEccCCCch-hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHH
Q 048209 24 EHTTVGTNGINMHVASIGT------GPVVLFIHGFPELW-YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTAL 96 (349)
Q Consensus 24 ~~~~~~~~g~~~~~~~~g~------~~~iv~~hG~~~~~-~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~ 96 (349)
+..+...+|.+++|..+++ +++|||+||++.+. ..|..++..|.++||+|+++|+||||.|..... ...+.+
T Consensus 34 ~~~~~~~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~-~~~~~~ 112 (330)
T PLN02298 34 KSFFTSPRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEGLRA-YVPNVD 112 (330)
T ss_pred cceEEcCCCCEEEEEEEecCCCCCCceEEEEEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCCccc-cCCCHH
Confidence 4455666999999987642 35699999998664 356777888998999999999999999975432 245788
Q ss_pred HHHHHHHHHHHHhCC------ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 97 HLVGDLIGLLDKLGI------HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~------~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
.+++|+.++++.++. .+++|+||||||.+++.++.++|++|+++|++++...
T Consensus 113 ~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~ 170 (330)
T PLN02298 113 LVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCK 170 (330)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEeccccc
Confidence 899999999998753 3699999999999999999999999999999998654
No 24
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.97 E-value=9e-31 Score=212.39 Aligned_cols=118 Identities=22% Similarity=0.285 Sum_probs=103.8
Q ss_pred eeCCeeEEEEee-CCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048209 29 GTNGINMHVASI-GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLD 107 (349)
Q Consensus 29 ~~~g~~~~~~~~-g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~ 107 (349)
+.+|.+++|..- +++|+|||+||++.+...|..++..|.+.||+|+++|+||||.|..... ..++++++++++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~-~~~~~~~~~~~l~~~i~ 81 (273)
T PLN02211 3 EENGEEVTDMKPNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDAD-SVTTFDEYNKPLIDFLS 81 (273)
T ss_pred cccccccccccccCCCCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecccCCCCCCCCcc-cCCCHHHHHHHHHHHHH
Confidence 347888888886 4578999999999999999999999998899999999999998854332 34789999999999999
Q ss_pred HhC-CceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 108 KLG-IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 108 ~~~-~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
.++ .++++|+||||||+++..++.++|++|+++|++++..
T Consensus 82 ~l~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~ 122 (273)
T PLN02211 82 SLPENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATM 122 (273)
T ss_pred hcCCCCCEEEEEECchHHHHHHHHHhChhheeEEEEecccc
Confidence 985 5799999999999999999999999999999998753
No 25
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.97 E-value=3.1e-31 Score=214.67 Aligned_cols=247 Identities=25% Similarity=0.380 Sum_probs=160.9
Q ss_pred EEEEeeCC---CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048209 35 MHVASIGT---GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGI 111 (349)
Q Consensus 35 ~~~~~~g~---~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (349)
++|...|+ +|+|||+||++.+...|..+++.|.+ ||+|+++|+||||.|.... ..++++++++++.++++.++.
T Consensus 2 ~~~~~~g~~~~~~~li~~hg~~~~~~~~~~~~~~l~~-~~~v~~~d~~G~G~s~~~~--~~~~~~~~~~~~~~~i~~~~~ 78 (251)
T TIGR02427 2 LHYRLDGAADGAPVLVFINSLGTDLRMWDPVLPALTP-DFRVLRYDKRGHGLSDAPE--GPYSIEDLADDVLALLDHLGI 78 (251)
T ss_pred ceEEeecCCCCCCeEEEEcCcccchhhHHHHHHHhhc-ccEEEEecCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHhCC
Confidence 56766664 57899999999999999999999875 7999999999999997654 467899999999999999998
Q ss_pred ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHHH
Q 048209 112 HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARL 191 (349)
Q Consensus 112 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
++++++||||||++++.+|.++|++++++|+++++....... ..... ........ .... ....
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~-----~~~~~------~~~~~~~~-~~~~-----~~~~ 141 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPE-----SWNAR------IAAVRAEG-LAAL-----ADAV 141 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchh-----hHHHH------Hhhhhhcc-HHHH-----HHHH
Confidence 999999999999999999999999999999998754322110 00000 00000000 0000 0001
Q ss_pred HHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHHhhhh
Q 048209 192 MKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWE 271 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (349)
+..++.... . . ........+...+..............+.. ....
T Consensus 142 ~~~~~~~~~---------------~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 186 (251)
T TIGR02427 142 LERWFTPGF---------------R----E---AHPARLDLYRNMLVRQPPDGYAGCCAAIRD-------------ADFR 186 (251)
T ss_pred HHHHccccc---------------c----c---CChHHHHHHHHHHHhcCHHHHHHHHHHHhc-------------ccHH
Confidence 111110000 0 0 000111111111111000000000000000 0111
Q ss_pred hccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHH
Q 048209 272 LMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIK 347 (349)
Q Consensus 272 ~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~ 347 (349)
. .+.++++|+++++|++|.++|++.... +.+..++. ++++++++||+++.++|+++.+.|.+|++
T Consensus 187 ~----~~~~~~~Pvlii~g~~D~~~~~~~~~~------~~~~~~~~-~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 187 D----RLGAIAVPTLCIAGDQDGSTPPELVRE------IADLVPGA-RFAEIRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred H----HhhhcCCCeEEEEeccCCcCChHHHHH------HHHhCCCc-eEEEECCCCCcccccChHHHHHHHHHHhC
Confidence 1 123789999999999999999886655 56667888 99999999999999999999999999984
No 26
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=203.16 Aligned_cols=109 Identities=25% Similarity=0.359 Sum_probs=97.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCC--CCcchHHHHHHHHHHHHHHhCCceeEEEEec
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS--VTSYTALHLVGDLIGLLDKLGIHQVFLVGHD 120 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S 120 (349)
++++||+||+|++...|....+.|++ .++|+++|++|+|+|+++.= ........+++-++++....++.+.+|||||
T Consensus 90 ~~plVliHGyGAg~g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~L~KmilvGHS 168 (365)
T KOG4409|consen 90 KTPLVLIHGYGAGLGLFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMGLEKMILVGHS 168 (365)
T ss_pred CCcEEEEeccchhHHHHHHhhhhhhh-cCceEEecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcCCcceeEeecc
Confidence 68999999999999999999999999 59999999999999998762 1223455789999999999999999999999
Q ss_pred hHHHHHHHHHhhCccccceeeeeccCCCCCCC
Q 048209 121 WGALIAWYFCLFRPDRVKALVNMSVPFPPRNP 152 (349)
Q Consensus 121 ~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 152 (349)
+||.+|..||.+||++|..|||++|......+
T Consensus 169 fGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~ 200 (365)
T KOG4409|consen 169 FGGYLAAKYALKYPERVEKLILVSPWGFPEKP 200 (365)
T ss_pred chHHHHHHHHHhChHhhceEEEecccccccCC
Confidence 99999999999999999999999998776544
No 27
>PRK07581 hypothetical protein; Validated
Probab=99.97 E-value=7.3e-31 Score=220.97 Aligned_cols=120 Identities=18% Similarity=0.301 Sum_probs=91.7
Q ss_pred eeCCeeEEEEeeCC----C-CeEEEEccCCCchhhHHHHH---HHHhhCCceEEeeCCCCCCCCCCCCCC-CcchHH---
Q 048209 29 GTNGINMHVASIGT----G-PVVLFIHGFPELWYSWRNQL---LYLSSRGYRAIAPDLRGYGDTDAPPSV-TSYTAL--- 96 (349)
Q Consensus 29 ~~~g~~~~~~~~g~----~-~~iv~~hG~~~~~~~~~~~~---~~L~~~G~~v~~~D~~G~G~s~~~~~~-~~~~~~--- 96 (349)
+++|.+++|...|+ + |+||++||++++...|..++ +.|...+|+|+++|+||||.|..+... ..++.+
T Consensus 22 ~~~~~~l~y~~~G~~~~~~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~ 101 (339)
T PRK07581 22 TLPDARLAYKTYGTLNAAKDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFP 101 (339)
T ss_pred CcCCceEEEEecCccCCCCCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Confidence 45789999999885 2 45777777777776776554 467656799999999999999865421 123332
Q ss_pred --HHHHHHHH----HHHHhCCce-eEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 97 --HLVGDLIG----LLDKLGIHQ-VFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 97 --~~~~~~~~----~~~~~~~~~-~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
.+++|+.+ +++++++++ ++||||||||++|+.+|.++|++|+++|++++...
T Consensus 102 ~~~~~~~~~~~~~~l~~~lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~ 160 (339)
T PRK07581 102 HVTIYDNVRAQHRLLTEKFGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAK 160 (339)
T ss_pred ceeHHHHHHHHHHHHHHHhCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCC
Confidence 24555554 678899999 47999999999999999999999999999987543
No 28
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.97 E-value=1e-30 Score=214.42 Aligned_cols=257 Identities=25% Similarity=0.340 Sum_probs=158.8
Q ss_pred CCCeEEEEccCCCchhhHHHHHHHHhhC-CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEec
Q 048209 42 TGPVVLFIHGFPELWYSWRNQLLYLSSR-GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHD 120 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S 120 (349)
++++||++|||+++...|+.++..|.+. |+.|+++|++|+|.+...+....|+..+.++.+..++...+.++++++|||
T Consensus 57 ~~~pvlllHGF~~~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~~~~~~lvghS 136 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEVFVEPVSLVGHS 136 (326)
T ss_pred CCCcEEEeccccCCcccHhhhccccccccceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhhcCcceEEEEeC
Confidence 4789999999999999999999999876 599999999999965554444569999999999999999998999999999
Q ss_pred hHHHHHHHHHhhCccccceee---eeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHH-HHHHHh
Q 048209 121 WGALIAWYFCLFRPDRVKALV---NMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTAR-LMKKFL 196 (349)
Q Consensus 121 ~Gg~ia~~~a~~~p~~v~~lv---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 196 (349)
+||.+|+.+|+.+|+.|+++| +++++......... .................|.... .... +...+.
T Consensus 137 ~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~ 207 (326)
T KOG1454|consen 137 LGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIK---GLRRLLDKFLSALELLIPLSLT------EPVRLVSEGLL 207 (326)
T ss_pred cHHHHHHHHHHhCcccccceeeecccccccccCCcchh---HHHHhhhhhccHhhhcCccccc------cchhheeHhhh
Confidence 999999999999999999999 55555443222100 0000000000000000000000 0000 000000
Q ss_pred hhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCC----CCC-CCcccccccccCCCCchhHHHHHHhhhh
Q 048209 197 CLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQK----GFT-GPVNYYRCSDLYVPKTYTMAIIIKENWE 271 (349)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (349)
.. ......-.....+......... ..+ .....+...... .+...
T Consensus 208 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 256 (326)
T KOG1454|consen 208 RC--------------------LKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGF-----------DENLL 256 (326)
T ss_pred cc--------------------eeeeccccccchhhhhhheecccccchhhhheeeEEEeccCc-----------cchHH
Confidence 00 0000000000000000000000 000 000000000000 00111
Q ss_pred hccCCCCcccC-CcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHHhC
Q 048209 272 LMAPWTGVQIE-VPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349 (349)
Q Consensus 272 ~~~~~~l~~i~-~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~~~ 349 (349)
... .++. +|+|+++|++|.++|.+.+.. +.+.+|++ ++.+++++||+++.|+|+++++.|..|+.++
T Consensus 257 ~~~----~~i~~~pvlii~G~~D~~~p~~~~~~------~~~~~pn~-~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 257 SLI----KKIWKCPVLIIWGDKDQIVPLELAEE------LKKKLPNA-ELVEIPGAGHLPHLERPEEVAALLRSFIARL 324 (326)
T ss_pred Hhh----ccccCCceEEEEcCcCCccCHHHHHH------HHhhCCCc-eEEEeCCCCcccccCCHHHHHHHHHHHHHHh
Confidence 111 1555 999999999999999997665 66767999 9999999999999999999999999999763
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.97 E-value=3.3e-30 Score=208.55 Aligned_cols=105 Identities=36% Similarity=0.600 Sum_probs=95.0
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHHhCCceeEEEEech
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGD-LIGLLDKLGIHQVFLVGHDW 121 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvG~S~ 121 (349)
+|+||++||++++...|..+++.|+ +||+|+++|+||+|.|..+......++++.+++ +..+++.++.++++++|||+
T Consensus 1 ~~~vv~~hG~~~~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~ 79 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQLGIEPFFLVGYSM 79 (251)
T ss_pred CCEEEEEcCCCCchhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 4789999999999999999999998 689999999999999987654456788999999 78888888888999999999
Q ss_pred HHHHHHHHHhhCccccceeeeeccCCC
Q 048209 122 GALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 122 Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
||.+++.+|.++|+.|+++|++++...
T Consensus 80 Gg~ia~~~a~~~~~~v~~lil~~~~~~ 106 (251)
T TIGR03695 80 GGRIALYYALQYPERVQGLILESGSPG 106 (251)
T ss_pred HHHHHHHHHHhCchheeeeEEecCCCC
Confidence 999999999999999999999987643
No 30
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.97 E-value=2.1e-30 Score=209.08 Aligned_cols=244 Identities=20% Similarity=0.230 Sum_probs=148.4
Q ss_pred CCC-CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEe
Q 048209 41 GTG-PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGH 119 (349)
Q Consensus 41 g~~-~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~ 119 (349)
|++ |+|||+||++++...|..+++.|.+ +|+|+++|+||+|.|.... .++++++++++.+.+ .++++++||
T Consensus 1 g~g~~~iv~~HG~~~~~~~~~~~~~~l~~-~~~vi~~d~~G~G~s~~~~---~~~~~~~~~~~~~~~----~~~~~lvG~ 72 (245)
T TIGR01738 1 GQGNVHLVLIHGWGMNAEVFRCLDEELSA-HFTLHLVDLPGHGRSRGFG---PLSLADAAEAIAAQA----PDPAIWLGW 72 (245)
T ss_pred CCCCceEEEEcCCCCchhhHHHHHHhhcc-CeEEEEecCCcCccCCCCC---CcCHHHHHHHHHHhC----CCCeEEEEE
Confidence 345 7999999999999999999999986 5999999999999987543 457777777766543 268999999
Q ss_pred chHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHHHHHHHhhhh
Q 048209 120 DWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLR 199 (349)
Q Consensus 120 S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
||||.+++.+|.++|++++++|++++........... ...... ....+ ...+. ......+..++...
T Consensus 73 S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~-~~~~~~-----~~~~~------~~~~~-~~~~~~~~~~~~~~ 139 (245)
T TIGR01738 73 SLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWP-EGIKPD-----VLTGF------QQQLS-DDYQRTIERFLALQ 139 (245)
T ss_pred cHHHHHHHHHHHHCHHhhheeeEecCCcccccCCccc-ccCCHH-----HHHHH------HHHhh-hhHHHHHHHHHHHH
Confidence 9999999999999999999999998764332111000 000000 00000 00000 00001111111100
Q ss_pred ccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHHhhhhhccCCCCc
Q 048209 200 IAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTGV 279 (349)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (349)
.... . ........+...+....... ...+.... ..+...+.... +.
T Consensus 140 ~~~~------------------~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~----l~ 185 (245)
T TIGR01738 140 TLGT------------------P--TARQDARALKQTLLARPTPN-VQVLQAGL---------EILATVDLRQP----LQ 185 (245)
T ss_pred HhcC------------------C--ccchHHHHHHHHhhccCCCC-HHHHHHHH---------HHhhcccHHHH----Hh
Confidence 0000 0 00011111111111000000 00000000 00000011111 23
Q ss_pred ccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHH
Q 048209 280 QIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFI 346 (349)
Q Consensus 280 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl 346 (349)
++++|+++++|++|.++|++.... +.+..|++ ++++++++||+++.|+|+++++.|.+|+
T Consensus 186 ~i~~Pvlii~g~~D~~~~~~~~~~------~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 186 NISVPFLRLYGYLDGLVPAKVVPY------LDKLAPHS-ELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred cCCCCEEEEeecCCcccCHHHHHH------HHHhCCCC-eEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 889999999999999999887665 56778898 9999999999999999999999999996
No 31
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.97 E-value=1.7e-30 Score=219.19 Aligned_cols=122 Identities=24% Similarity=0.330 Sum_probs=100.8
Q ss_pred EeeCCeeEEEEeeCC-----CCeEEEEccCCCchh-----------hHHHHH---HHHhhCCceEEeeCCCC--CCCCCC
Q 048209 28 VGTNGINMHVASIGT-----GPVVLFIHGFPELWY-----------SWRNQL---LYLSSRGYRAIAPDLRG--YGDTDA 86 (349)
Q Consensus 28 ~~~~g~~~~~~~~g~-----~~~iv~~hG~~~~~~-----------~~~~~~---~~L~~~G~~v~~~D~~G--~G~s~~ 86 (349)
..++|.+++|...|+ +++|||+||++++.. .|..++ ..|...+|+|+++|+|| +|.|..
T Consensus 11 ~~~~~~~~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 11 GVLSDVRVAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CccCCceEEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 356789999999984 579999999999763 377775 25655679999999999 555543
Q ss_pred CC----C------CCcchHHHHHHHHHHHHHHhCCce-eEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 87 PP----S------VTSYTALHLVGDLIGLLDKLGIHQ-VFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 87 ~~----~------~~~~~~~~~~~~~~~~~~~~~~~~-~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
.. . ...++++++++++.+++++++.++ ++++||||||++++.+|.++|++|+++|++++....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 164 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARH 164 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcC
Confidence 11 0 125789999999999999999999 999999999999999999999999999999986543
No 32
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.97 E-value=5.9e-31 Score=209.78 Aligned_cols=102 Identities=47% Similarity=0.729 Sum_probs=94.0
Q ss_pred EEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHH
Q 048209 46 VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALI 125 (349)
Q Consensus 46 iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~i 125 (349)
|||+||++++...|..+++.|+ +||+|+++|+||+|.|........++++++++++.+++++++.++++++|||+||.+
T Consensus 1 vv~~hG~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~ 79 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDPLAEALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILVGHSMGGMI 79 (228)
T ss_dssp EEEE-STTTTGGGGHHHHHHHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccccccccccccccccccc
Confidence 7999999999999999999995 689999999999999987664346789999999999999999999999999999999
Q ss_pred HHHHHhhCccccceeeeeccCCC
Q 048209 126 AWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 126 a~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
++.++.++|++|+++|+++++..
T Consensus 80 a~~~a~~~p~~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 80 ALRLAARYPDRVKGLVLLSPPPP 102 (228)
T ss_dssp HHHHHHHSGGGEEEEEEESESSS
T ss_pred ccccccccccccccceeeccccc
Confidence 99999999999999999998764
No 33
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.97 E-value=4.2e-29 Score=206.46 Aligned_cols=122 Identities=25% Similarity=0.372 Sum_probs=102.3
Q ss_pred EEEeeCCeeEEEEeeCC---CCeEEEEccCCCchh-hHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCC-cchHHHHHH
Q 048209 26 TTVGTNGINMHVASIGT---GPVVLFIHGFPELWY-SWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVT-SYTALHLVG 100 (349)
Q Consensus 26 ~~~~~~g~~~~~~~~g~---~~~iv~~hG~~~~~~-~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~-~~~~~~~~~ 100 (349)
.+++.+|.++.|...+. +++|||+||++++.. .|..+...|.+.||+|+++|+||+|.|..+.... .++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~ 84 (288)
T TIGR01250 5 GIITVDGGYHLFTKTGGEGEKIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVD 84 (288)
T ss_pred ceecCCCCeEEEEeccCCCCCCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHH
Confidence 46778888888887763 689999999866554 4556666666668999999999999998654212 478999999
Q ss_pred HHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 101 DLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 101 ~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
++.+++++++.++++++||||||.+++.+|.++|++++++|++++..
T Consensus 85 ~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 85 ELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred HHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 99999999999999999999999999999999999999999998754
No 34
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.97 E-value=1.8e-28 Score=199.32 Aligned_cols=271 Identities=24% Similarity=0.253 Sum_probs=175.0
Q ss_pred ccceEEEeeCCeeEEEEeeCC----CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHH
Q 048209 22 KIEHTTVGTNGINMHVASIGT----GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALH 97 (349)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~g~----~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~ 97 (349)
..+..+...+|..++|..+.. ..+||++||++.+..-|..++..|..+||.|+++|+||||.|........-++.+
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~~~g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~~~~f~~ 88 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEPPKGVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDSFAD 88 (298)
T ss_pred cccceeecCCCceEEEEeecCCCCCCcEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCcCCchhHHH
Confidence 456778888999999998864 2589999999999999999999999999999999999999997322224446899
Q ss_pred HHHHHHHHHHHhCC----ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhc
Q 048209 98 LVGDLIGLLDKLGI----HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRF 173 (349)
Q Consensus 98 ~~~~~~~~~~~~~~----~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
+.+|+..+++.... .+++++||||||.|++.++.+++..|+++|+.+|....... ....
T Consensus 89 ~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~------~~~~----------- 151 (298)
T COG2267 89 YVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGA------ILRL----------- 151 (298)
T ss_pred HHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChh------HHHH-----------
Confidence 99999999988853 58999999999999999999999999999999998766420 0000
Q ss_pred cCCccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCC--ChhhHHHHHHhccCCCCCCCcccccc
Q 048209 174 QEPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWL--SEEDVNYYASKFNQKGFTGPVNYYRC 251 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
..................... . . .......++ +++..+.|...-....-.....++..
T Consensus 152 -------------~~~~~~~~~~~~~~p~~~~~~-~--~----~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~ 211 (298)
T COG2267 152 -------------ILARLALKLLGRIRPKLPVDS-N--L----LEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDL 211 (298)
T ss_pred -------------HHHHHhcccccccccccccCc-c--c----ccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHH
Confidence 000000000000000000000 0 0 000011111 22333333322110000000111111
Q ss_pred cccCCCCchhHHHHHHh-hhhhccCCCCcccCCcEEEEEecCCcccc-CCcchhhhcccccccccCCceeEEEecCCCcc
Q 048209 252 SDLYVPKTYTMAIIIKE-NWELMAPWTGVQIEVPVKFIVGDQDLVYN-NKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHF 329 (349)
Q Consensus 252 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 329 (349)
... ... ...... ..+++|+|+++|++|.+++ .+...+++ -....+++ ++++++|+.|.
T Consensus 212 ~~~-----------a~~~~~~~~~----~~~~~PvLll~g~~D~vv~~~~~~~~~~----~~~~~~~~-~~~~~~g~~He 271 (298)
T COG2267 212 ALL-----------AGRVPALRDA----PAIALPVLLLQGGDDRVVDNVEGLARFF----ERAGSPDK-ELKVIPGAYHE 271 (298)
T ss_pred HHH-----------hhcccchhcc----ccccCCEEEEecCCCccccCcHHHHHHH----HhcCCCCc-eEEecCCcchh
Confidence 110 000 011112 2789999999999999999 57666644 22345566 99999999999
Q ss_pred cchh-cH--HHHHHHHHHHHHhC
Q 048209 330 INQE-KA--EEVGAHIYEFIKKF 349 (349)
Q Consensus 330 ~~~e-~~--~~~~~~i~~fl~~~ 349 (349)
++.| +. +++.+.+.+|+.++
T Consensus 272 ~~~E~~~~r~~~~~~~~~~l~~~ 294 (298)
T COG2267 272 LLNEPDRAREEVLKDILAWLAEA 294 (298)
T ss_pred hhcCcchHHHHHHHHHHHHHHhh
Confidence 8877 45 89999999999763
No 35
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.97 E-value=5.8e-30 Score=217.38 Aligned_cols=121 Identities=23% Similarity=0.322 Sum_probs=98.8
Q ss_pred EeeCCeeEEEEeeCC-----CCeEEEEccCCCchhh-------------HHHHHH---HHhhCCceEEeeCCCCC-CCCC
Q 048209 28 VGTNGINMHVASIGT-----GPVVLFIHGFPELWYS-------------WRNQLL---YLSSRGYRAIAPDLRGY-GDTD 85 (349)
Q Consensus 28 ~~~~g~~~~~~~~g~-----~~~iv~~hG~~~~~~~-------------~~~~~~---~L~~~G~~v~~~D~~G~-G~s~ 85 (349)
.+++|.+++|...|+ +|+|||+||++++... |..++. .|...+|+|+++|++|+ |.|.
T Consensus 28 ~~~~~~~~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~ 107 (379)
T PRK00175 28 AVLPPVELAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGST 107 (379)
T ss_pred CCcCCceEEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCC
Confidence 445788899999884 5899999999999875 566652 44345799999999983 5453
Q ss_pred CCCC------------CCcchHHHHHHHHHHHHHHhCCce-eEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 86 APPS------------VTSYTALHLVGDLIGLLDKLGIHQ-VFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 86 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
.+.+ ...++++++++++.+++++++.++ ++++||||||++++.+|.++|++|+++|++++...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 183 (379)
T PRK00175 108 GPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSAR 183 (379)
T ss_pred CCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcc
Confidence 3211 125799999999999999999999 48999999999999999999999999999997654
No 36
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.97 E-value=3.7e-28 Score=207.04 Aligned_cols=106 Identities=22% Similarity=0.375 Sum_probs=89.8
Q ss_pred CCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcch----HHHHHHHHHHHHHHhCCceeEEE
Q 048209 42 TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYT----ALHLVGDLIGLLDKLGIHQVFLV 117 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lv 117 (349)
++|+|||+||++++...|...+..|.+. |+|+++|+||||.|+.+.. ...+ .+.+++++.++++.++.++++++
T Consensus 104 ~~p~vvllHG~~~~~~~~~~~~~~L~~~-~~vi~~D~rG~G~S~~~~~-~~~~~~~~~~~~~~~i~~~~~~l~~~~~~lv 181 (402)
T PLN02894 104 DAPTLVMVHGYGASQGFFFRNFDALASR-FRVIAIDQLGWGGSSRPDF-TCKSTEETEAWFIDSFEEWRKAKNLSNFILL 181 (402)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHHhC-CEEEEECCCCCCCCCCCCc-ccccHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 3689999999999999999999999875 9999999999999986542 1111 22457788888888898999999
Q ss_pred EechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 118 GHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 118 G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
||||||.+++.+|.++|++|+++|++++....
T Consensus 182 GhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~ 213 (402)
T PLN02894 182 GHSFGGYVAAKYALKHPEHVQHLILVGPAGFS 213 (402)
T ss_pred EECHHHHHHHHHHHhCchhhcEEEEECCcccc
Confidence 99999999999999999999999999986543
No 37
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.96 E-value=1.3e-28 Score=210.82 Aligned_cols=120 Identities=27% Similarity=0.388 Sum_probs=107.8
Q ss_pred eEEEeeCCeeEEEEeeCC--CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHH
Q 048209 25 HTTVGTNGINMHVASIGT--GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDL 102 (349)
Q Consensus 25 ~~~~~~~g~~~~~~~~g~--~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~ 102 (349)
......++.+++|...|+ +++|||+||++++...|..++..|.+. |+|+++|+||||.|.... ...+++++++++
T Consensus 111 ~~~~~~~~~~i~~~~~g~~~~~~vl~~HG~~~~~~~~~~~~~~l~~~-~~v~~~d~~g~G~s~~~~--~~~~~~~~~~~~ 187 (371)
T PRK14875 111 PRKARIGGRTVRYLRLGEGDGTPVVLIHGFGGDLNNWLFNHAALAAG-RPVIALDLPGHGASSKAV--GAGSLDELAAAV 187 (371)
T ss_pred CCcceEcCcEEEEecccCCCCCeEEEECCCCCccchHHHHHHHHhcC-CEEEEEcCCCCCCCCCCC--CCCCHHHHHHHH
Confidence 345777889999998875 689999999999999999999999875 999999999999996554 456899999999
Q ss_pred HHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 103 IGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 103 ~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
.++++.++..+++++|||+||.+++.+|.++|++++++|+++++.
T Consensus 188 ~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~ 232 (371)
T PRK14875 188 LAFLDALGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAG 232 (371)
T ss_pred HHHHHhcCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCC
Confidence 999999998999999999999999999999999999999998764
No 38
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.96 E-value=1.2e-27 Score=202.10 Aligned_cols=117 Identities=22% Similarity=0.267 Sum_probs=96.8
Q ss_pred eCCeeEEEEeeCC-----CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHH
Q 048209 30 TNGINMHVASIGT-----GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIG 104 (349)
Q Consensus 30 ~~g~~~~~~~~g~-----~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~ 104 (349)
.++..++|..+.+ +++|||+||++++...|..+++.|.++||+|+++|+||||.|+.... ...+.+.+++|+.+
T Consensus 118 ~~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~-~~~~~~~~~~Dl~~ 196 (395)
T PLN02652 118 ARRNALFCRSWAPAAGEMRGILIIIHGLNEHSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHG-YVPSLDYVVEDTEA 196 (395)
T ss_pred CCCCEEEEEEecCCCCCCceEEEEECCchHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCC-CCcCHHHHHHHHHH
Confidence 3567888777654 36899999999999999999999999999999999999999987542 23477888999999
Q ss_pred HHHHhCC----ceeEEEEechHHHHHHHHHhhCc---cccceeeeeccCCC
Q 048209 105 LLDKLGI----HQVFLVGHDWGALIAWYFCLFRP---DRVKALVNMSVPFP 148 (349)
Q Consensus 105 ~~~~~~~----~~~~lvG~S~Gg~ia~~~a~~~p---~~v~~lvl~~~~~~ 148 (349)
+++.+.. .+++++||||||.+++.++. +| ++++++|+.+|...
T Consensus 197 ~l~~l~~~~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~ 246 (395)
T PLN02652 197 FLEKIRSENPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALR 246 (395)
T ss_pred HHHHHHHhCCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccc
Confidence 9988753 37999999999999998765 55 37999999987653
No 39
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.96 E-value=5.2e-28 Score=186.68 Aligned_cols=268 Identities=18% Similarity=0.171 Sum_probs=170.6
Q ss_pred ccceEEEeeCCeeEEEEeeCC------CCeEEEEccCCCch-hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcch
Q 048209 22 KIEHTTVGTNGINMHVASIGT------GPVVLFIHGFPELW-YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYT 94 (349)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~g~------~~~iv~~hG~~~~~-~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~ 94 (349)
..+..+.+.+|.++.+..+-+ +-.|+++||++... ..|..++..|+..||.|+++|++|||.|++... .--+
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl~~-yi~~ 105 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHA-YVPS 105 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCCCCCceEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCCcc-cCCc
Confidence 345566677899998887754 23799999999775 788999999999999999999999999996543 3447
Q ss_pred HHHHHHHHHHHHHHhC------CceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccch
Q 048209 95 ALHLVGDLIGLLDKLG------IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDY 168 (349)
Q Consensus 95 ~~~~~~~~~~~~~~~~------~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (349)
++..++|+....+.+. ..+.+|+||||||.|++.++.+.|+..+|+|+++|.+.......... ..
T Consensus 106 ~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p-~v-------- 176 (313)
T KOG1455|consen 106 FDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHP-PV-------- 176 (313)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCc-HH--------
Confidence 8899999999888752 23789999999999999999999999999999999776433211000 00
Q ss_pred hhhhccCCccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCccc
Q 048209 169 YICRFQEPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNY 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
..+...+....+.....+...+ .....-+++........-. .
T Consensus 177 ---------------------~~~l~~l~~liP~wk~vp~~d~--------~~~~~kdp~~r~~~~~npl---------~ 218 (313)
T KOG1455|consen 177 ---------------------ISILTLLSKLIPTWKIVPTKDI--------IDVAFKDPEKRKILRSDPL---------C 218 (313)
T ss_pred ---------------------HHHHHHHHHhCCceeecCCccc--------cccccCCHHHHHHhhcCCc---------e
Confidence 0011111111111110000000 0000011111111111000 0
Q ss_pred ccccccCCCCchhHHHHH-HhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCC
Q 048209 249 YRCSDLYVPKTYTMAIII-KENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVA 327 (349)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 327 (349)
|..-. .....+.++. ..+..... .++++|.+++||+.|.++++..++++++ .....-|++..+||+-
T Consensus 219 y~g~p---Rl~T~~ElLr~~~~le~~l----~~vtvPflilHG~dD~VTDp~~Sk~Lye-----~A~S~DKTlKlYpGm~ 286 (313)
T KOG1455|consen 219 YTGKP---RLKTAYELLRVTADLEKNL----NEVTVPFLILHGTDDKVTDPKVSKELYE-----KASSSDKTLKLYPGMW 286 (313)
T ss_pred ecCCc---cHHHHHHHHHHHHHHHHhc----ccccccEEEEecCCCcccCcHHHHHHHH-----hccCCCCceeccccHH
Confidence 00000 0000011110 01222233 3899999999999999999999998653 2223334999999999
Q ss_pred cccch----hcHHHHHHHHHHHHHhC
Q 048209 328 HFINQ----EKAEEVGAHIYEFIKKF 349 (349)
Q Consensus 328 H~~~~----e~~~~~~~~i~~fl~~~ 349 (349)
|.++. |+.+.+...|.+||+++
T Consensus 287 H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 287 HSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 98764 57788999999999874
No 40
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.96 E-value=1.9e-28 Score=179.56 Aligned_cols=225 Identities=19% Similarity=0.235 Sum_probs=154.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh---CCceeEEEEe
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL---GIHQVFLVGH 119 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lvG~ 119 (349)
+..|+++||+.|+....+.+.+.|.++||.|+++.+||||.....- -..++++|.+++.+..+++ +.+.|.++|.
T Consensus 15 ~~AVLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~f--l~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~Gl 92 (243)
T COG1647 15 NRAVLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDF--LKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGL 92 (243)
T ss_pred CEEEEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHH--hcCCHHHHHHHHHHHHHHHHHcCCCeEEEEee
Confidence 3789999999999999999999999999999999999999886433 4567888888887777666 6789999999
Q ss_pred chHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHHHHHHHhhhh
Q 048209 120 DWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLR 199 (349)
Q Consensus 120 S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
||||.+++.+|..+| ++++|.+|++........ ..+.+.. +.+++-.
T Consensus 93 SmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~-iie~~l~----------------------------y~~~~kk-- 139 (243)
T COG1647 93 SMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRI-IIEGLLE----------------------------YFRNAKK-- 139 (243)
T ss_pred cchhHHHHHHHhhCC--ccceeeecCCcccccchh-hhHHHHH----------------------------HHHHhhh--
Confidence 999999999999999 999999999876533210 0000000 0000000
Q ss_pred ccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHHhhhhhccCCCCc
Q 048209 200 IAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTGV 279 (349)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (349)
....+.+..+.....+.......... +..+. .+.... +.
T Consensus 140 ----------------------~e~k~~e~~~~e~~~~~~~~~~~~~~-~~~~i--------------~~~~~~----~~ 178 (243)
T COG1647 140 ----------------------YEGKDQEQIDKEMKSYKDTPMTTTAQ-LKKLI--------------KDARRS----LD 178 (243)
T ss_pred ----------------------ccCCCHHHHHHHHHHhhcchHHHHHH-HHHHH--------------HHHHhh----hh
Confidence 00012233322222222110000000 00000 022222 23
Q ss_pred ccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccch-hcHHHHHHHHHHHHHh
Q 048209 280 QIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQ-EKAEEVGAHIYEFIKK 348 (349)
Q Consensus 280 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~-e~~~~~~~~i~~fl~~ 348 (349)
.|..|+++++|++|.++|.+.+.-. +....++.|++.+++++||.+-. +..+.+.+.|..||++
T Consensus 179 ~I~~pt~vvq~~~D~mv~~~sA~~I-----y~~v~s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 179 KIYSPTLVVQGRQDEMVPAESANFI-----YDHVESDDKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred hcccchhheecccCCCCCHHHHHHH-----HHhccCCcceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 8999999999999999998887754 33445565699999999999755 4789999999999974
No 41
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.96 E-value=2.6e-27 Score=196.31 Aligned_cols=122 Identities=25% Similarity=0.395 Sum_probs=101.7
Q ss_pred EEEee-CCeeEEEEeeCC--CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHH
Q 048209 26 TTVGT-NGINMHVASIGT--GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDL 102 (349)
Q Consensus 26 ~~~~~-~g~~~~~~~~g~--~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~ 102 (349)
.+++. +|.+++|...|+ +++|||+||++++...+ .+...+...+|+|+++|+||||.|........++.+++++|+
T Consensus 7 ~~~~~~~~~~l~y~~~g~~~~~~lvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~dl 85 (306)
T TIGR01249 7 GYLNVSDNHQLYYEQSGNPDGKPVVFLHGGPGSGTDP-GCRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTWDLVADI 85 (306)
T ss_pred CeEEcCCCcEEEEEECcCCCCCEEEEECCCCCCCCCH-HHHhccCccCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHH
Confidence 34444 689999999886 78999999988776543 344455556799999999999999865433356788999999
Q ss_pred HHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 103 IGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 103 ~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
..++++++.++++++||||||.+++.++.++|++|+++|++++...
T Consensus 86 ~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~ 131 (306)
T TIGR01249 86 EKLREKLGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLL 131 (306)
T ss_pred HHHHHHcCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccC
Confidence 9999999999999999999999999999999999999999987544
No 42
>PRK05855 short chain dehydrogenase; Validated
Probab=99.96 E-value=3.1e-27 Score=214.28 Aligned_cols=121 Identities=28% Similarity=0.596 Sum_probs=101.8
Q ss_pred ceEEEeeCCeeEEEEeeCC--CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHH
Q 048209 24 EHTTVGTNGINMHVASIGT--GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGD 101 (349)
Q Consensus 24 ~~~~~~~~g~~~~~~~~g~--~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~ 101 (349)
...++..+|.+++|...|+ +|+|||+||++++...|..+++.|. .||+|+++|+||||.|+.......++.+++++|
T Consensus 4 ~~~~~~~~g~~l~~~~~g~~~~~~ivllHG~~~~~~~w~~~~~~L~-~~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~a~d 82 (582)
T PRK05855 4 RRTVVSSDGVRLAVYEWGDPDRPTVVLVHGYPDNHEVWDGVAPLLA-DRFRVVAYDVRGAGRSSAPKRTAAYTLARLADD 82 (582)
T ss_pred eEEEEeeCCEEEEEEEcCCCCCCeEEEEcCCCchHHHHHHHHHHhh-cceEEEEecCCCCCCCCCCCcccccCHHHHHHH
Confidence 3566778999999999885 7899999999999999999999994 579999999999999987654457899999999
Q ss_pred HHHHHHHhCCce-eEEEEechHHHHHHHHHhh--Cccccceeeeecc
Q 048209 102 LIGLLDKLGIHQ-VFLVGHDWGALIAWYFCLF--RPDRVKALVNMSV 145 (349)
Q Consensus 102 ~~~~~~~~~~~~-~~lvG~S~Gg~ia~~~a~~--~p~~v~~lvl~~~ 145 (349)
+..++++++..+ ++|+||||||.+++.++.+ .++++..++.+++
T Consensus 83 l~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~ 129 (582)
T PRK05855 83 FAAVIDAVSPDRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSG 129 (582)
T ss_pred HHHHHHHhCCCCcEEEEecChHHHHHHHHHhCccchhhhhhheeccC
Confidence 999999998765 9999999999999888876 2444555554443
No 43
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.95 E-value=1.9e-27 Score=231.75 Aligned_cols=112 Identities=29% Similarity=0.411 Sum_probs=98.4
Q ss_pred EEEEeeCC---CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCC------CCcchHHHHHHHHHHH
Q 048209 35 MHVASIGT---GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS------VTSYTALHLVGDLIGL 105 (349)
Q Consensus 35 ~~~~~~g~---~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~------~~~~~~~~~~~~~~~~ 105 (349)
++|...|+ +++|||+||++++...|..++..|.+. |+|+++|+||||.|..... ...++++++++++.++
T Consensus 1360 i~~~~~G~~~~~~~vVllHG~~~s~~~w~~~~~~L~~~-~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~l 1438 (1655)
T PLN02980 1360 IKVHEVGQNAEGSVVLFLHGFLGTGEDWIPIMKAISGS-ARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKL 1438 (1655)
T ss_pred EEEEecCCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-CEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHH
Confidence 45556664 689999999999999999999999875 9999999999999975431 1356899999999999
Q ss_pred HHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 106 LDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 106 ~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
+++++.++++|+||||||.+++.++.++|++|+++|++++..
T Consensus 1439 l~~l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p 1480 (1655)
T PLN02980 1439 IEHITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSP 1480 (1655)
T ss_pred HHHhCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCC
Confidence 999999999999999999999999999999999999998753
No 44
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=171.84 Aligned_cols=249 Identities=18% Similarity=0.271 Sum_probs=171.8
Q ss_pred cceEEEeeCCeeEEEEeeCCCC-eEEEEccCCCch-hhHHHHHHHHhhC-CceEEeeCCCCCCCCCCCCCCCcch---HH
Q 048209 23 IEHTTVGTNGINMHVASIGTGP-VVLFIHGFPELW-YSWRNQLLYLSSR-GYRAIAPDLRGYGDTDAPPSVTSYT---AL 96 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g~~~-~iv~~hG~~~~~-~~~~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~~~~~~~---~~ 96 (349)
.+...+.++|.++.|...|++| .|++++|..++. .+|.+.+..|-+. .++|+++|.||+|.|.++.. ... +.
T Consensus 21 ~te~kv~vng~ql~y~~~G~G~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~R--kf~~~ff~ 98 (277)
T KOG2984|consen 21 YTESKVHVNGTQLGYCKYGHGPNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPER--KFEVQFFM 98 (277)
T ss_pred hhhheeeecCceeeeeecCCCCceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcc--cchHHHHH
Confidence 4556788899999999999976 788899976654 5688888777654 38999999999999988763 333 34
Q ss_pred HHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCC
Q 048209 97 HLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEP 176 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
..+++...+++.+..+++.++|||=||..|+..|+++++.|.++|..++............+.++.. ..+..+.+.|
T Consensus 99 ~Da~~avdLM~aLk~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv---~kWs~r~R~P 175 (277)
T KOG2984|consen 99 KDAEYAVDLMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDV---NKWSARGRQP 175 (277)
T ss_pred HhHHHHHHHHHHhCCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHH---hhhhhhhcch
Confidence 5566777888999999999999999999999999999999999999998777655433322222221 0000000010
Q ss_pred ccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCC
Q 048209 177 GEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYV 256 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
. +.. .....+.+.+ +..-....++.. +... +
T Consensus 176 ~--e~~---Yg~e~f~~~w--------------------------------a~wvD~v~qf~~--~~dG-~--------- 206 (277)
T KOG2984|consen 176 Y--EDH---YGPETFRTQW--------------------------------AAWVDVVDQFHS--FCDG-R--------- 206 (277)
T ss_pred H--HHh---cCHHHHHHHH--------------------------------HHHHHHHHHHhh--cCCC-c---------
Confidence 0 000 0000000000 000000111110 0000 0
Q ss_pred CCchhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHH
Q 048209 257 PKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAE 336 (349)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~ 336 (349)
--+...+ +++||+|+++|+.|++|+...+-- +....+.+ ++.++|.++|.+++.-++
T Consensus 207 ------------fCr~~lp----~vkcPtli~hG~kDp~~~~~hv~f------i~~~~~~a-~~~~~peGkHn~hLrya~ 263 (277)
T KOG2984|consen 207 ------------FCRLVLP----QVKCPTLIMHGGKDPFCGDPHVCF------IPVLKSLA-KVEIHPEGKHNFHLRYAK 263 (277)
T ss_pred ------------hHhhhcc----cccCCeeEeeCCcCCCCCCCCccc------hhhhcccc-eEEEccCCCcceeeechH
Confidence 1122333 999999999999999999876642 77888888 999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 048209 337 EVGAHIYEFIKK 348 (349)
Q Consensus 337 ~~~~~i~~fl~~ 348 (349)
+|+..+.+||++
T Consensus 264 eFnklv~dFl~~ 275 (277)
T KOG2984|consen 264 EFNKLVLDFLKS 275 (277)
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
No 45
>PLN02511 hydrolase
Probab=99.95 E-value=1.3e-27 Score=202.84 Aligned_cols=119 Identities=21% Similarity=0.363 Sum_probs=90.2
Q ss_pred EeeCCeeEEEE--e------eCCCCeEEEEccCCCchhh-H-HHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHH
Q 048209 28 VGTNGINMHVA--S------IGTGPVVLFIHGFPELWYS-W-RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALH 97 (349)
Q Consensus 28 ~~~~g~~~~~~--~------~g~~~~iv~~hG~~~~~~~-~-~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~ 97 (349)
...||..+.+. . ...+|+||++||+++++.. | ..++..+.++||+|+++|+||||.|.... .......
T Consensus 77 ~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~--~~~~~~~ 154 (388)
T PLN02511 77 RTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVTT--PQFYSAS 154 (388)
T ss_pred ECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCC--cCEEcCC
Confidence 33467776542 1 1236899999999776543 4 56777777889999999999999997643 2222345
Q ss_pred HHHHHHHHHHHhCC----ceeEEEEechHHHHHHHHHhhCccc--cceeeeeccCCC
Q 048209 98 LVGDLIGLLDKLGI----HQVFLVGHDWGALIAWYFCLFRPDR--VKALVNMSVPFP 148 (349)
Q Consensus 98 ~~~~~~~~~~~~~~----~~~~lvG~S~Gg~ia~~~a~~~p~~--v~~lvl~~~~~~ 148 (349)
.++|+.+++++++. .+++++||||||.+++.++.++|++ |.++++++++..
T Consensus 155 ~~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~ 211 (388)
T PLN02511 155 FTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFD 211 (388)
T ss_pred chHHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcC
Confidence 67788888887754 5899999999999999999999987 888888877654
No 46
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.95 E-value=1e-26 Score=195.50 Aligned_cols=119 Identities=21% Similarity=0.319 Sum_probs=96.2
Q ss_pred CCeeEEEEeeCC-----CCeEEEEccCCCchhh-------------HHHHHH---HHhhCCceEEeeCCCCCCCCCCC--
Q 048209 31 NGINMHVASIGT-----GPVVLFIHGFPELWYS-------------WRNQLL---YLSSRGYRAIAPDLRGYGDTDAP-- 87 (349)
Q Consensus 31 ~g~~~~~~~~g~-----~~~iv~~hG~~~~~~~-------------~~~~~~---~L~~~G~~v~~~D~~G~G~s~~~-- 87 (349)
...++.|..+|. .++||++|++++++.. |..++. .|....|.|+++|..|.|.|..+
T Consensus 39 ~~~~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~ 118 (389)
T PRK06765 39 PDVQMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNV 118 (389)
T ss_pred CCceEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCC
Confidence 467789999996 4799999999885421 655553 45444599999999998763211
Q ss_pred ---------C--------CCCcchHHHHHHHHHHHHHHhCCceeE-EEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 88 ---------P--------SVTSYTALHLVGDLIGLLDKLGIHQVF-LVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 88 ---------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
+ ++..+++.++++++..+++++++++++ ++||||||++++.+|.++|++|+++|++++....
T Consensus 119 g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~ 198 (389)
T PRK06765 119 ITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQN 198 (389)
T ss_pred CCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCC
Confidence 1 234579999999999999999999987 9999999999999999999999999999886543
No 47
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.94 E-value=6.6e-26 Score=178.18 Aligned_cols=254 Identities=21% Similarity=0.296 Sum_probs=164.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhC-CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhC----CceeEEE
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSR-GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLG----IHQVFLV 117 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lv 117 (349)
.|+++++||+.++...|+.+...|+.. |-.|+++|.|.||.|.... ..+...+++|+..+++..+ ..+++++
T Consensus 52 ~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~---~h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~ 128 (315)
T KOG2382|consen 52 APPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKIT---VHNYEAMAEDVKLFIDGVGGSTRLDPVVLL 128 (315)
T ss_pred CCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCcccc---ccCHHHHHHHHHHHHHHcccccccCCceec
Confidence 799999999999999999999999875 7899999999999998765 5668999999999999985 4589999
Q ss_pred EechHH-HHHHHHHhhCccccceeeeeccCCCCCC-CCCCccccchhhcccchhhhhccCCccHHHHHhccchHHHHHHH
Q 048209 118 GHDWGA-LIAWYFCLFRPDRVKALVNMSVPFPPRN-PAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKF 195 (349)
Q Consensus 118 G~S~Gg-~ia~~~a~~~p~~v~~lvl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
|||||| .+++..+..+|+.+..+|+++.+..... ......+.+......................+........+..+
T Consensus 129 GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~~~d~~~~~f 208 (315)
T KOG2382|consen 129 GHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEVGFDNLVRQF 208 (315)
T ss_pred ccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHhcchHHHHH
Confidence 999999 7888888899999999999987653211 11111111211111111100011222222222222222333333
Q ss_pred hhhhccCCCCCccCcCCCCCCCCCCCCCC-CChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHHhhhhhcc
Q 048209 196 LCLRIAKPLCIPKDTGLSTVPDPSALPSW-LSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMA 274 (349)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
+...... . .......| ..-..+......+... +++. +...
T Consensus 209 i~~nl~~-~------------~~~~s~~w~~nl~~i~~~~~~~~~~------s~~~------------------~l~~-- 249 (315)
T KOG2382|consen 209 ILTNLKK-S------------PSDGSFLWRVNLDSIASLLDEYEIL------SYWA------------------DLED-- 249 (315)
T ss_pred HHHhcCc-C------------CCCCceEEEeCHHHHHHHHHHHHhh------cccc------------------cccc--
Confidence 3222111 0 00000000 0111111111111000 0000 0000
Q ss_pred CCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHHhC
Q 048209 275 PWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIKKF 349 (349)
Q Consensus 275 ~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~~~ 349 (349)
.....||+++.|.++..++.+.-.+ +.+.+|++ ++..++++||+++.|+|++|.+.|.+|++++
T Consensus 250 ----~~~~~pvlfi~g~~S~fv~~~~~~~------~~~~fp~~-e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 250 ----GPYTGPVLFIKGLQSKFVPDEHYPR------MEKIFPNV-EVHELDEAGHWVHLEKPEEFIESISEFLEEP 313 (315)
T ss_pred ----cccccceeEEecCCCCCcChhHHHH------HHHhccch-heeecccCCceeecCCHHHHHHHHHHHhccc
Confidence 1678999999999999999886655 78889999 9999999999999999999999999999763
No 48
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.94 E-value=2.7e-25 Score=185.12 Aligned_cols=121 Identities=18% Similarity=0.302 Sum_probs=95.2
Q ss_pred EeeCCeeEEEEeeCC---CCeEEEEccCCCchh-hH-------------------------HHHHHHHhhCCceEEeeCC
Q 048209 28 VGTNGINMHVASIGT---GPVVLFIHGFPELWY-SW-------------------------RNQLLYLSSRGYRAIAPDL 78 (349)
Q Consensus 28 ~~~~g~~~~~~~~g~---~~~iv~~hG~~~~~~-~~-------------------------~~~~~~L~~~G~~v~~~D~ 78 (349)
.+.+|.++++..+.+ +.+||++||++.+.. .+ ..+++.|.++||.|+++|+
T Consensus 3 ~~~~g~~l~~~~~~~~~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~ 82 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVKNAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDL 82 (332)
T ss_pred cCCCCCeEEEeeeeccCCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEecc
Confidence 345888898887643 558999999998875 21 4578999999999999999
Q ss_pred CCCCCCCCCCCCC--cchHHHHHHHHHHHHHHhC------------------------CceeEEEEechHHHHHHHHHhh
Q 048209 79 RGYGDTDAPPSVT--SYTALHLVGDLIGLLDKLG------------------------IHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 79 ~G~G~s~~~~~~~--~~~~~~~~~~~~~~~~~~~------------------------~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
||||.|....... ..+++++++|+.++++.+. ..+++|+||||||.+++.++.+
T Consensus 83 rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~ 162 (332)
T TIGR01607 83 QGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLEL 162 (332)
T ss_pred cccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHH
Confidence 9999998643211 2478899999999887642 2479999999999999999876
Q ss_pred Ccc--------ccceeeeeccCCC
Q 048209 133 RPD--------RVKALVNMSVPFP 148 (349)
Q Consensus 133 ~p~--------~v~~lvl~~~~~~ 148 (349)
+++ .++++|+++|+..
T Consensus 163 ~~~~~~~~~~~~i~g~i~~s~~~~ 186 (332)
T TIGR01607 163 LGKSNENNDKLNIKGCISLSGMIS 186 (332)
T ss_pred hccccccccccccceEEEeccceE
Confidence 542 5899998888753
No 49
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.93 E-value=1.8e-24 Score=184.38 Aligned_cols=233 Identities=15% Similarity=0.114 Sum_probs=145.8
Q ss_pred eEEEee-CCeeEEEEee-----CCCCeEEEEccCCCch-hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHH
Q 048209 25 HTTVGT-NGINMHVASI-----GTGPVVLFIHGFPELW-YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALH 97 (349)
Q Consensus 25 ~~~~~~-~g~~~~~~~~-----g~~~~iv~~hG~~~~~-~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~ 97 (349)
...+.. +|.++..+.. ++.|+||++||+.+.. +.|..+++.|++.||.|+++|+||+|.|.... ...+...
T Consensus 170 ~v~i~~~~g~~l~g~l~~P~~~~~~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~--~~~d~~~ 247 (414)
T PRK05077 170 ELEFPIPGGGPITGFLHLPKGDGPFPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWK--LTQDSSL 247 (414)
T ss_pred EEEEEcCCCcEEEEEEEECCCCCCccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCC--ccccHHH
Confidence 333443 4546654432 2246666666666653 56888899999999999999999999997543 1223344
Q ss_pred HHHHHHHHHHHh---CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhcc
Q 048209 98 LVGDLIGLLDKL---GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQ 174 (349)
Q Consensus 98 ~~~~~~~~~~~~---~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
..+++.+.+... +.+++.++||||||.+++.+|..+|++|+++|+++++....... .....
T Consensus 248 ~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~---~~~~~------------- 311 (414)
T PRK05077 248 LHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTD---PKRQQ------------- 311 (414)
T ss_pred HHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcc---hhhhh-------------
Confidence 445555555554 45689999999999999999999999999999999875321100 00000
Q ss_pred CCccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCccccccccc
Q 048209 175 EPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
. ........+...... ...+.+.+......+.. .
T Consensus 312 ----------~--~p~~~~~~la~~lg~--------------------~~~~~~~l~~~l~~~sl---~----------- 345 (414)
T PRK05077 312 ----------Q--VPEMYLDVLASRLGM--------------------HDASDEALRVELNRYSL---K----------- 345 (414)
T ss_pred ----------h--chHHHHHHHHHHhCC--------------------CCCChHHHHHHhhhccc---h-----------
Confidence 0 000001111100000 00011111111111000 0
Q ss_pred CCCCchhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhc
Q 048209 255 YVPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEK 334 (349)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~ 334 (349)
...... .++++|+|+|+|++|.++|++.+.. +.+..++. +++++|++ ++.+.
T Consensus 346 --------------~~~~l~----~~i~~PvLiI~G~~D~ivP~~~a~~------l~~~~~~~-~l~~i~~~---~~~e~ 397 (414)
T PRK05077 346 --------------VQGLLG----RRCPTPMLSGYWKNDPFSPEEDSRL------IASSSADG-KLLEIPFK---PVYRN 397 (414)
T ss_pred --------------hhhhhc----cCCCCcEEEEecCCCCCCCHHHHHH------HHHhCCCC-eEEEccCC---CccCC
Confidence 000000 1789999999999999999998875 56778888 99999986 56679
Q ss_pred HHHHHHHHHHHHHhC
Q 048209 335 AEEVGAHIYEFIKKF 349 (349)
Q Consensus 335 ~~~~~~~i~~fl~~~ 349 (349)
++++.+.+.+||+++
T Consensus 398 ~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 398 FDKALQEISDWLEDR 412 (414)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999864
No 50
>PRK10985 putative hydrolase; Provisional
Probab=99.92 E-value=3.6e-24 Score=178.57 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=78.3
Q ss_pred CCeEEEEccCCCchh--hHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcc---hHHHHHHHHHHHHHHhCCceeEEE
Q 048209 43 GPVVLFIHGFPELWY--SWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSY---TALHLVGDLIGLLDKLGIHQVFLV 117 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~--~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lv 117 (349)
+|+||++||++++.. .+..++..|.++||+|+++|+||+|.+..... ..+ ..+|....+..+.+.++..+++++
T Consensus 58 ~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~-~~~~~~~~~D~~~~i~~l~~~~~~~~~~~v 136 (324)
T PRK10985 58 KPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLH-RIYHSGETEDARFFLRWLQREFGHVPTAAV 136 (324)
T ss_pred CCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCc-ceECCCchHHHHHHHHHHHHhCCCCCEEEE
Confidence 589999999987643 35668899999999999999999998754321 111 233333333334444566789999
Q ss_pred EechHHHHHHHHHhhCccc--cceeeeeccCCCC
Q 048209 118 GHDWGALIAWYFCLFRPDR--VKALVNMSVPFPP 149 (349)
Q Consensus 118 G~S~Gg~ia~~~a~~~p~~--v~~lvl~~~~~~~ 149 (349)
||||||.+++.++.++++. +.++|+++++...
T Consensus 137 G~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~ 170 (324)
T PRK10985 137 GYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLML 170 (324)
T ss_pred EecchHHHHHHHHHhhCCCCCccEEEEEcCCCCH
Confidence 9999999988888877644 8999999987653
No 51
>PLN02872 triacylglycerol lipase
Probab=99.92 E-value=1.9e-24 Score=181.80 Aligned_cols=301 Identities=16% Similarity=0.182 Sum_probs=168.8
Q ss_pred cceEEEeeCCeeEEEEeeC---------CCCeEEEEccCCCchhhHH------HHHHHHhhCCceEEeeCCCCCCCCCC-
Q 048209 23 IEHTTVGTNGINMHVASIG---------TGPVVLFIHGFPELWYSWR------NQLLYLSSRGYRAIAPDLRGYGDTDA- 86 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g---------~~~~iv~~hG~~~~~~~~~------~~~~~L~~~G~~v~~~D~~G~G~s~~- 86 (349)
.++.+.+-||..+...+.. ++|+||++||++.++..|. .++..|+++||+|+++|+||++.|.+
T Consensus 45 e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh 124 (395)
T PLN02872 45 TEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGH 124 (395)
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCC
Confidence 3455566799998877742 1579999999999888873 35567888999999999999886632
Q ss_pred ------CCCCCcchHHHHH-HHHHHHHHHh---CCceeEEEEechHHHHHHHHHhhCcc---ccceeeeeccCCCCCCCC
Q 048209 87 ------PPSVTSYTALHLV-GDLIGLLDKL---GIHQVFLVGHDWGALIAWYFCLFRPD---RVKALVNMSVPFPPRNPA 153 (349)
Q Consensus 87 ------~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~lvG~S~Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~~~~~ 153 (349)
......+++++++ .|+.++++++ ..++++++||||||.+++.++ .+|+ +|+++++++|........
T Consensus 125 ~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~~~~~ 203 (395)
T PLN02872 125 VTLSEKDKEFWDWSWQELALYDLAEMIHYVYSITNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYLDHVT 203 (395)
T ss_pred CCCCccchhccCCcHHHHHHHHHHHHHHHHHhccCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhhccCC
Confidence 1122356888888 7999999987 346899999999999998555 5676 689999999876543221
Q ss_pred CCccccchhhc-ccc---hhhhhc-cCCccHHHHHhcc-----chHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCC
Q 048209 154 VRPLNNFRAVY-GDD---YYICRF-QEPGEIEEEFAQI-----DTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPS 223 (349)
Q Consensus 154 ~~~~~~~~~~~-~~~---~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (349)
......+.... ... .....+ ............. .....+..+.... .......+...+ ...+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~----~~~n~~~~~~~~---~~~pa 276 (395)
T PLN02872 204 APLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTN----CCFNASRIDYYL---EYEPH 276 (395)
T ss_pred CHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCC----cccchhhhhHHH---hcCCC
Confidence 11110000000 000 000000 0000000000000 0000011110000 000000000000 01122
Q ss_pred CCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHHhhhhhccCCCCccc--CCcEEEEEecCCccccCCcc
Q 048209 224 WLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTGVQI--EVPVKFIVGDQDLVYNNKGM 301 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i--~~Pvl~i~G~~D~~~~~~~~ 301 (349)
..+-..+..+.+......++. ++-.. ..+...++.. ......+.++ ++|+++++|++|.+++++.+
T Consensus 277 gtS~k~~~H~~Q~~~s~~f~~-------yDyg~----~~n~~~Yg~~-~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv 344 (395)
T PLN02872 277 PSSVKNLRHLFQMIRKGTFAH-------YDYGI----FKNLKLYGQV-NPPAFDLSLIPKSLPLWMGYGGTDGLADVTDV 344 (395)
T ss_pred cchHHHHHHHHHHHhcCCccc-------CCCCc----hhhHHHhCCC-CCCCcCcccCCCCccEEEEEcCCCCCCCHHHH
Confidence 233344445554433322221 11000 0011111111 1223345577 68999999999999998887
Q ss_pred hhhhcccccccccCCceeEEEecCCCccc---chhcHHHHHHHHHHHHHhC
Q 048209 302 KEYIHDGGFKKYVPYLQEVVVMEGVAHFI---NQEKAEEVGAHIYEFIKKF 349 (349)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~gH~~---~~e~~~~~~~~i~~fl~~~ 349 (349)
.. +.+.+++..++..++++||.. ..+.|+++.+.|.+||+++
T Consensus 345 ~~------l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 345 EH------TLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred HH------HHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 66 556666632888899999964 4478999999999999863
No 52
>PRK13604 luxD acyl transferase; Provisional
Probab=99.92 E-value=4.4e-24 Score=170.12 Aligned_cols=123 Identities=22% Similarity=0.215 Sum_probs=94.7
Q ss_pred cceEEEeeCCeeEEEEeeCC-------CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCC-CCCCCCCCCCcch
Q 048209 23 IEHTTVGTNGINMHVASIGT-------GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGY-GDTDAPPSVTSYT 94 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g~-------~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~-G~s~~~~~~~~~~ 94 (349)
+++..-..+|.+|+-+...+ .++||++||++++...+..+++.|.++||.|+.+|+||+ |.|++.. ...+
T Consensus 10 ~~~~~~~~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~--~~~t 87 (307)
T PRK13604 10 IDHVICLENGQSIRVWETLPKENSPKKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTI--DEFT 87 (307)
T ss_pred hhheEEcCCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcc--ccCc
Confidence 34445555889988775543 378999999999988899999999999999999999987 9997654 2333
Q ss_pred HHHHHHHHHHHHHHh---CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 95 ALHLVGDLIGLLDKL---GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 95 ~~~~~~~~~~~~~~~---~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
.....+|+.++++++ +.+++.|+||||||.+|+..|...+ ++++|+.+|....
T Consensus 88 ~s~g~~Dl~aaid~lk~~~~~~I~LiG~SmGgava~~~A~~~~--v~~lI~~sp~~~l 143 (307)
T PRK13604 88 MSIGKNSLLTVVDWLNTRGINNLGLIAASLSARIAYEVINEID--LSFLITAVGVVNL 143 (307)
T ss_pred ccccHHHHHHHHHHHHhcCCCceEEEEECHHHHHHHHHhcCCC--CCEEEEcCCcccH
Confidence 333466776666555 5568999999999999977777543 8999999887653
No 53
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.92 E-value=2.9e-24 Score=185.48 Aligned_cols=257 Identities=14% Similarity=0.110 Sum_probs=155.7
Q ss_pred CCeEEEEccCCCchhhHH-----HHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEE
Q 048209 43 GPVVLFIHGFPELWYSWR-----NQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLV 117 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~-----~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 117 (349)
++|||++||+......|+ .+++.|.++||+|+++|++|+|.+.......+|..+.+.+++..+++.++.++++++
T Consensus 188 ~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lv 267 (532)
T TIGR01838 188 KTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCV 267 (532)
T ss_pred CCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 689999999998888775 799999999999999999999998765544566667778888888888899999999
Q ss_pred EechHHHHHH----HHHhhC-ccccceeeeeccCCCCCCCCCCccccchh-----hcccchhhhhccCCc-cHHHHHhcc
Q 048209 118 GHDWGALIAW----YFCLFR-PDRVKALVNMSVPFPPRNPAVRPLNNFRA-----VYGDDYYICRFQEPG-EIEEEFAQI 186 (349)
Q Consensus 118 G~S~Gg~ia~----~~a~~~-p~~v~~lvl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~ 186 (349)
||||||.++. .+++.. |++|+++++++++.+...... ...+.. .+... .......++ .....+...
T Consensus 268 G~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~--l~~f~~~~~~~~~e~~-~~~~G~lpg~~m~~~F~~l 344 (532)
T TIGR01838 268 GYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGE--LGVFVDEEIVAGIERQ-NGGGGYLDGRQMAVTFSLL 344 (532)
T ss_pred EECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcch--hhhhcCchhHHHHHHH-HHhcCCCCHHHHHHHHHhc
Confidence 9999999852 345555 788999999999877654321 111100 00000 000011111 122223333
Q ss_pred chHHHHHHHhhhhc-cCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHH
Q 048209 187 DTARLMKKFLCLRI-AKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAII 265 (349)
Q Consensus 187 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (349)
.....+-..+-... ....... ..+..+..+ ...+..+....|...+...+.... ..+....
T Consensus 345 rp~~l~w~~~v~~yl~g~~~~~-fdll~Wn~D----~t~lP~~~~~~~lr~ly~~N~L~~-G~~~v~g------------ 406 (532)
T TIGR01838 345 RENDLIWNYYVDNYLKGKSPVP-FDLLFWNSD----STNLPGKMHNFYLRNLYLQNALTT-GGLEVCG------------ 406 (532)
T ss_pred ChhhHHHHHHHHHHhcCCCccc-hhHHHHhcc----CccchHHHHHHHHHHHHhcCCCcC-CeeEECC------------
Confidence 33332222111111 0000000 001111111 122334444455443332221111 1111111
Q ss_pred HHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcH
Q 048209 266 IKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKA 335 (349)
Q Consensus 266 ~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~ 335 (349)
....|..|++|++++.|++|.++|++.+.. +.+.+++. +.++++++||.+++++|
T Consensus 407 --------~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~------l~~~i~~~-~~~vL~~sGHi~~ienP 461 (532)
T TIGR01838 407 --------VRLDLSKVKVPVYIIATREDHIAPWQSAYR------GAALLGGP-KTFVLGESGHIAGVVNP 461 (532)
T ss_pred --------EecchhhCCCCEEEEeeCCCCcCCHHHHHH------HHHHCCCC-EEEEECCCCCchHhhCC
Confidence 112345899999999999999999887765 56777887 88899999999998876
No 54
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.92 E-value=4.9e-23 Score=167.47 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=88.3
Q ss_pred EEeeCCeeEEEEee----CCCCeEEEEccCCC----chhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHH
Q 048209 27 TVGTNGINMHVASI----GTGPVVLFIHGFPE----LWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHL 98 (349)
Q Consensus 27 ~~~~~g~~~~~~~~----g~~~~iv~~hG~~~----~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~ 98 (349)
.+..+|.++.-... .++++||++||++. +...|..+++.|+++||.|+++|+||||.|.... .++.++
T Consensus 6 ~~~~~~~~l~g~~~~p~~~~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~----~~~~~~ 81 (274)
T TIGR03100 6 TFSCEGETLVGVLHIPGASHTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN----LGFEGI 81 (274)
T ss_pred EEEcCCcEEEEEEEcCCCCCCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC----CCHHHH
Confidence 34456665542222 13567888888653 4455778889999999999999999999987532 356677
Q ss_pred HHHHHHHHHHh-----CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 99 VGDLIGLLDKL-----GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 99 ~~~~~~~~~~~-----~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
.+|+.++++.+ +.++++++||||||.+++.+|.. +.+|+++|++++...
T Consensus 82 ~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~ 135 (274)
T TIGR03100 82 DADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVR 135 (274)
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccC
Confidence 78888877776 55789999999999999999875 458999999998644
No 55
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.90 E-value=7.4e-23 Score=172.67 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=90.3
Q ss_pred EEeeCCeeEEEEeeC----CCCeEEEEccCCCchhhH-----HHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHH
Q 048209 27 TVGTNGINMHVASIG----TGPVVLFIHGFPELWYSW-----RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALH 97 (349)
Q Consensus 27 ~~~~~g~~~~~~~~g----~~~~iv~~hG~~~~~~~~-----~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~ 97 (349)
..+.++..++.+... .+++||++||+..+...+ +.+++.|.++||+|+++|++|+|.++... ++++
T Consensus 42 v~~~~~~~l~~~~~~~~~~~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~-----~~~d 116 (350)
T TIGR01836 42 VYREDKVVLYRYTPVKDNTHKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRYL-----TLDD 116 (350)
T ss_pred EEEcCcEEEEEecCCCCcCCCCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhcC-----CHHH
Confidence 344455565544322 146899999986555443 68999999999999999999999876433 4444
Q ss_pred HH-----HHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCC
Q 048209 98 LV-----GDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPR 150 (349)
Q Consensus 98 ~~-----~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 150 (349)
++ +.+..+++..+.++++++||||||++++.+++.+|++|+++|+++++....
T Consensus 117 ~~~~~~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 117 YINGYIDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFE 174 (350)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccC
Confidence 43 334555556678899999999999999999999999999999999987654
No 56
>PRK11071 esterase YqiA; Provisional
Probab=99.90 E-value=1.5e-22 Score=154.46 Aligned_cols=89 Identities=21% Similarity=0.213 Sum_probs=75.2
Q ss_pred CeEEEEccCCCchhhHHH--HHHHHhhC--CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEe
Q 048209 44 PVVLFIHGFPELWYSWRN--QLLYLSSR--GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGH 119 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~--~~~~L~~~--G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~ 119 (349)
|+||++||++++...|.. +...|.+. +|+|+++|+||+| ++.++++.++++.++.++++++||
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~-------------~~~~~~l~~l~~~~~~~~~~lvG~ 68 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP-------------ADAAELLESLVLEHGGDPLGLVGS 68 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH-------------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 689999999999999884 34566552 6999999999874 357888999999999999999999
Q ss_pred chHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 120 DWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 120 S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
||||.+++.+|.++|. ++|+++++..
T Consensus 69 S~Gg~~a~~~a~~~~~---~~vl~~~~~~ 94 (190)
T PRK11071 69 SLGGYYATWLSQCFML---PAVVVNPAVR 94 (190)
T ss_pred CHHHHHHHHHHHHcCC---CEEEECCCCC
Confidence 9999999999999983 4688887544
No 57
>PRK10566 esterase; Provisional
Probab=99.89 E-value=3.1e-22 Score=161.56 Aligned_cols=114 Identities=21% Similarity=0.240 Sum_probs=78.7
Q ss_pred CCee-EEEEeeC----CCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcc-----hHHHHHH
Q 048209 31 NGIN-MHVASIG----TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSY-----TALHLVG 100 (349)
Q Consensus 31 ~g~~-~~~~~~g----~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~-----~~~~~~~ 100 (349)
.|.. ++|...+ +.|+||++||++++...|..+++.|+++||.|+++|+||+|.+......... ...+..+
T Consensus 10 ~~~~~~~~~p~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~ 89 (249)
T PRK10566 10 AGIEVLHAFPAGQRDTPLPTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQ 89 (249)
T ss_pred cCcceEEEcCCCCCCCCCCEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHH
Confidence 3443 4555543 2589999999999998999999999999999999999999976432110111 0112234
Q ss_pred HHHHHHHHh------CCceeEEEEechHHHHHHHHHhhCccccceeeeec
Q 048209 101 DLIGLLDKL------GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 144 (349)
Q Consensus 101 ~~~~~~~~~------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~ 144 (349)
|+.++++.+ +.++++++|||+||.+++.++.++|+....+++++
T Consensus 90 ~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~ 139 (249)
T PRK10566 90 EFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMG 139 (249)
T ss_pred HHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeC
Confidence 444444432 34689999999999999999999886433444433
No 58
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.88 E-value=7e-23 Score=163.57 Aligned_cols=77 Identities=39% Similarity=0.632 Sum_probs=71.2
Q ss_pred ceEEeeCCCCCCCCCC--CCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 71 YRAIAPDLRGYGDTDA--PPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 71 ~~v~~~D~~G~G~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
|+|+++|+||+|.|++ ......++.+++++++..+++.++.++++++||||||.+++.+|..+|++|+++|+++++.
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~~ 79 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPERVKKLVLISPPP 79 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESS
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchhhcCcEEEeeec
Confidence 7899999999999995 1444788999999999999999999999999999999999999999999999999999863
No 59
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.88 E-value=9.9e-22 Score=149.32 Aligned_cols=119 Identities=28% Similarity=0.348 Sum_probs=95.7
Q ss_pred EEEeeCCee--EEEEeeC----CCCeEEEEccCCCchhhHHHHHHHHhhC-CceEEeeCCCCCCCCCCCCCCCcchHHHH
Q 048209 26 TTVGTNGIN--MHVASIG----TGPVVLFIHGFPELWYSWRNQLLYLSSR-GYRAIAPDLRGYGDTDAPPSVTSYTALHL 98 (349)
Q Consensus 26 ~~~~~~g~~--~~~~~~g----~~~~iv~~hG~~~~~~~~~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~~~~~~~~~~~ 98 (349)
.-++++|.. +..+..+ ++|.+++.||.|.+.-.|..++..|... -.+++++|+||||++...++ .+.+.+.+
T Consensus 51 edv~i~~~~~t~n~Y~t~~~~t~gpil~l~HG~G~S~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e-~dlS~eT~ 129 (343)
T KOG2564|consen 51 EDVSIDGSDLTFNVYLTLPSATEGPILLLLHGGGSSALSFAIFASELKSKIRCRCLALDLRGHGETKVENE-DDLSLETM 129 (343)
T ss_pred cccccCCCcceEEEEEecCCCCCccEEEEeecCcccchhHHHHHHHHHhhcceeEEEeeccccCccccCCh-hhcCHHHH
Confidence 345555544 4433333 3899999999999999999999988764 45788899999999987665 67899999
Q ss_pred HHHHHHHHHHhC---CceeEEEEechHHHHHHHHHhh--CccccceeeeeccC
Q 048209 99 VGDLIGLLDKLG---IHQVFLVGHDWGALIAWYFCLF--RPDRVKALVNMSVP 146 (349)
Q Consensus 99 ~~~~~~~~~~~~---~~~~~lvG~S~Gg~ia~~~a~~--~p~~v~~lvl~~~~ 146 (349)
+.|+-++++++- ..+++||||||||.||...|.. -|. +.|+++++..
T Consensus 130 ~KD~~~~i~~~fge~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viDVV 181 (343)
T KOG2564|consen 130 SKDFGAVIKELFGELPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVIDVV 181 (343)
T ss_pred HHHHHHHHHHHhccCCCceEEEeccccchhhhhhhhhhhchh-hhceEEEEEe
Confidence 999999999882 3489999999999999887764 465 8999999864
No 60
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.86 E-value=3.9e-21 Score=141.81 Aligned_cols=93 Identities=28% Similarity=0.410 Sum_probs=76.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHH
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGAL 124 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ 124 (349)
+||++||++++...|..+++.|+++||.|+.+|+||+|.+... ....++.+++. .+..+.++++++|||+||.
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~i~l~G~S~Gg~ 73 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGHGDSDGA-----DAVERVLADIR--AGYPDPDRIILIGHSMGGA 73 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTSTTSHHS-----HHHHHHHHHHH--HHHCTCCEEEEEEETHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCCccchh-----HHHHHHHHHHH--hhcCCCCcEEEEEEccCcH
Confidence 6899999999999999999999999999999999999988321 13333333333 1123667999999999999
Q ss_pred HHHHHHhhCccccceeeeecc
Q 048209 125 IAWYFCLFRPDRVKALVNMSV 145 (349)
Q Consensus 125 ia~~~a~~~p~~v~~lvl~~~ 145 (349)
+++.++.+. .+++++|++++
T Consensus 74 ~a~~~~~~~-~~v~~~v~~~~ 93 (145)
T PF12695_consen 74 IAANLAARN-PRVKAVVLLSP 93 (145)
T ss_dssp HHHHHHHHS-TTESEEEEESE
T ss_pred HHHHHhhhc-cceeEEEEecC
Confidence 999999998 68999999998
No 61
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.86 E-value=1.5e-20 Score=178.19 Aligned_cols=272 Identities=18% Similarity=0.230 Sum_probs=149.8
Q ss_pred CCCeEEEEccCCCchhhHHHH-----HHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH---hCCce
Q 048209 42 TGPVVLFIHGFPELWYSWRNQ-----LLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK---LGIHQ 113 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~~~~-----~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 113 (349)
.+++|||+||++.+...|+.. ++.|.++||+|+++|+ |.++.+......++.+++..+.+.++. +..++
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~---G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~~~~~ 142 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDF---GSPDKVEGGMERNLADHVVALSEAIDTVKDVTGRD 142 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcC---CCCChhHcCccCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 368999999999999999865 8899999999999994 666554321235666776666666654 34468
Q ss_pred eEEEEechHHHHHHHHHhhC-ccccceeeeeccCCCCCCCCCCc-cccc-hh--hcccchhhhhccCCccH-HHHHhccc
Q 048209 114 VFLVGHDWGALIAWYFCLFR-PDRVKALVNMSVPFPPRNPAVRP-LNNF-RA--VYGDDYYICRFQEPGEI-EEEFAQID 187 (349)
Q Consensus 114 ~~lvG~S~Gg~ia~~~a~~~-p~~v~~lvl~~~~~~~~~~~~~~-~~~~-~~--~~~~~~~~~~~~~~~~~-~~~~~~~~ 187 (349)
++++||||||++++.+++.+ +++|+++|+++++.+........ .... .. .+...........|... ...+....
T Consensus 143 v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 222 (994)
T PRK07868 143 VHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDIPGWMARTGFQMLD 222 (994)
T ss_pred eEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCCCHHHHHHHHHhcC
Confidence 99999999999999988754 56899999999986543221100 0000 00 00000001111222211 11121122
Q ss_pred hHHHHHHH---hhhhccCCCCCccCcCCCCCCCCCCCCCC--CChhhHHHHHHhccCCCCCCCcccccccccCCCCchhH
Q 048209 188 TARLMKKF---LCLRIAKPLCIPKDTGLSTVPDPSALPSW--LSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTM 262 (349)
Q Consensus 188 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (349)
........ +.................+.. ...| ........+...+...+.....
T Consensus 223 p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~----~~~w~~~~g~~~~~~~~~~~~~n~~~~g---------------- 282 (994)
T PRK07868 223 PVKTAKARVDFLRQLHDREALLPREQQRRFLE----SEGWIAWSGPAISELLKQFIAHNRMMTG---------------- 282 (994)
T ss_pred hhHHHHHHHHHHHhcCchhhhccchhhHhHHH----HhhccccchHHHHHHHHHHHHhCcccCc----------------
Confidence 22112211 111110000000000000000 0000 0000111111111110000000
Q ss_pred HHHHHhhhhh-ccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeE-EEecCCCcccch---hcHHH
Q 048209 263 AIIIKENWEL-MAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEV-VVMEGVAHFINQ---EKAEE 337 (349)
Q Consensus 263 ~~~~~~~~~~-~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gH~~~~---e~~~~ 337 (349)
.... .....|.+|++|+|+|+|++|.++|++.... +.+.+|+. ++ .+++++||+.++ ..+++
T Consensus 283 ------~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~------l~~~i~~a-~~~~~~~~~GH~g~~~g~~a~~~ 349 (994)
T PRK07868 283 ------GFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRG------IRRAAPNA-EVYESLIRAGHFGLVVGSRAAQQ 349 (994)
T ss_pred ------eEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHH------HHHhCCCC-eEEEEeCCCCCEeeeechhhhhh
Confidence 0000 0011245999999999999999999988776 66778888 76 678999998654 36899
Q ss_pred HHHHHHHHHHhC
Q 048209 338 VGAHIYEFIKKF 349 (349)
Q Consensus 338 ~~~~i~~fl~~~ 349 (349)
++..|.+||+++
T Consensus 350 ~wp~i~~wl~~~ 361 (994)
T PRK07868 350 TWPTVADWVKWL 361 (994)
T ss_pred hChHHHHHHHHh
Confidence 999999999864
No 62
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.85 E-value=3.8e-20 Score=147.95 Aligned_cols=290 Identities=16% Similarity=0.149 Sum_probs=168.6
Q ss_pred CCeeEEEEeeCC-----CCeEEEEccCCCchhh-----------HHHHH---HHHhhCCceEEeeCCCCCC-CCCCCC--
Q 048209 31 NGINMHVASIGT-----GPVVLFIHGFPELWYS-----------WRNQL---LYLSSRGYRAIAPDLRGYG-DTDAPP-- 88 (349)
Q Consensus 31 ~g~~~~~~~~g~-----~~~iv~~hG~~~~~~~-----------~~~~~---~~L~~~G~~v~~~D~~G~G-~s~~~~-- 88 (349)
.+..+.|..+|. .+.|+++|++++++.. |..++ +.+.-..|.||+.|..|.+ .|..+.
T Consensus 34 ~~~~vay~T~Gtln~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~ 113 (368)
T COG2021 34 SDARVAYETYGTLNAEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSI 113 (368)
T ss_pred cCcEEEEEecccccccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCc
Confidence 567899999996 4689999999885432 44443 2343345999999999876 454433
Q ss_pred ---------CCCcchHHHHHHHHHHHHHHhCCceeE-EEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccc
Q 048209 89 ---------SVTSYTALHLVGDLIGLLDKLGIHQVF-LVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLN 158 (349)
Q Consensus 89 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 158 (349)
.++.+++.|+++....+++++|++++. +||.||||+.|+.++..||++|+++|.+++.............
T Consensus 114 ~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~ 193 (368)
T COG2021 114 NPGGKPYGSDFPVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNE 193 (368)
T ss_pred CCCCCccccCCCcccHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHH
Confidence 234578999999989999999999987 8999999999999999999999999999987665443332222
Q ss_pred cchhhcccchhhhh-----ccCCccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHH
Q 048209 159 NFRAVYGDDYYICR-----FQEPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYY 233 (349)
Q Consensus 159 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
..++.+.....+.. -..|.. .+. +.+++..............+.+... .......-.....+.|
T Consensus 194 ~~r~AI~~DP~~n~G~Y~~~~~P~~---GL~-------~AR~l~~ltYrS~~~~~~rF~r~~~-~~~~~~~~~~f~vESY 262 (368)
T COG2021 194 VQRQAIEADPDWNGGDYYEGTQPER---GLR-------LARMLAHLTYRSEEELDERFGRRLQ-ADPLRGGGVRFAVESY 262 (368)
T ss_pred HHHHHHHhCCCccCCCccCCCCcch---hHH-------HHHHHHHHHccCHHHHHHHhccccc-ccccCCCchhHHHHHH
Confidence 23322211111100 111110 000 0111110000000000000000000 0000000123445555
Q ss_pred HHhccCC-CCCCCcccccccccCCCCchhHHHHHHhhhhhc-----cCCCCcccCCcEEEEEecCCccccCCcchhhhcc
Q 048209 234 ASKFNQK-GFTGPVNYYRCSDLYVPKTYTMAIIIKENWELM-----APWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHD 307 (349)
Q Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~ 307 (349)
.+..... -.+...+.|-.+.. ..+..+.. ....|+.+++|++++.-+.|.++|++..++
T Consensus 263 L~~qg~kf~~rfDaNsYL~lt~-----------ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~---- 327 (368)
T COG2021 263 LDYQGDKFVARFDANSYLYLTR-----------ALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRA---- 327 (368)
T ss_pred HHHHHHHHHhccCcchHHHHHH-----------HHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHH----
Confidence 5433211 11111111111100 00001100 111245899999999999999999998877
Q ss_pred cccccccCCceeEEEec-CCCcccchhcHHHHHHHHHHHHHh
Q 048209 308 GGFKKYVPYLQEVVVME-GVAHFINQEKAEEVGAHIYEFIKK 348 (349)
Q Consensus 308 ~~~~~~~~~~~~~~~~~-~~gH~~~~e~~~~~~~~i~~fl~~ 348 (349)
+.+.++....+.+++ ..||-.++...+.+...|..||+.
T Consensus 328 --~~~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 328 --LAEALPAAGALREIDSPYGHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred --HHHhccccCceEEecCCCCchhhhcchhhhhHHHHHHhhc
Confidence 667777762366665 579999999999999999999975
No 63
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.85 E-value=5e-19 Score=144.64 Aligned_cols=116 Identities=40% Similarity=0.719 Sum_probs=94.0
Q ss_pred eeCCeeEEEEeeCC-CCeEEEEccCCCchhhHHHHHHHHhhC--CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 048209 29 GTNGINMHVASIGT-GPVVLFIHGFPELWYSWRNQLLYLSSR--GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGL 105 (349)
Q Consensus 29 ~~~g~~~~~~~~g~-~~~iv~~hG~~~~~~~~~~~~~~L~~~--G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~ 105 (349)
...+..+.|...+. +|+++++||++++...|......+... .|+++.+|+||||.|. .. .......++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~-~~---~~~~~~~~~~~~~~ 81 (282)
T COG0596 6 AADGVRLAYREAGGGGPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSD-PA---GYSLSAYADDLAAL 81 (282)
T ss_pred cCCCeEEEEeecCCCCCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCC-cc---cccHHHHHHHHHHH
Confidence 34456666666665 679999999999999988843333331 1899999999999997 11 23444559999999
Q ss_pred HHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 106 LDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 106 ~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
++.++..+++++|||+||.+++.++.++|++++++|++++...
T Consensus 82 ~~~~~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~ 124 (282)
T COG0596 82 LDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPP 124 (282)
T ss_pred HHHhCCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCCC
Confidence 9999988999999999999999999999999999999998755
No 64
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.84 E-value=3.5e-19 Score=130.27 Aligned_cols=208 Identities=17% Similarity=0.249 Sum_probs=139.4
Q ss_pred eeCCCCeEEEEccCCCchh--hHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCc-e--
Q 048209 39 SIGTGPVVLFIHGFPELWY--SWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIH-Q-- 113 (349)
Q Consensus 39 ~~g~~~~iv~~hG~~~~~~--~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 113 (349)
..|+...+|++||+-.+.. ....++..|++.|+-++.+|++|.|+|...-.... ....++|+..+++++... +
T Consensus 29 ~tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~Gn--~~~eadDL~sV~q~~s~~nr~v 106 (269)
T KOG4667|consen 29 ETGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYGN--YNTEADDLHSVIQYFSNSNRVV 106 (269)
T ss_pred ccCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccCc--ccchHHHHHHHHHHhccCceEE
Confidence 3455789999999987653 46777889999999999999999999987664333 344569999999998433 3
Q ss_pred eEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHHHHH
Q 048209 114 VFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMK 193 (349)
Q Consensus 114 ~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
-+++|||-||.+++.+|.++++ ++-+|.+++-+.....- ...+. ..++.
T Consensus 107 ~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I--------------------------~eRlg----~~~l~ 155 (269)
T KOG4667|consen 107 PVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGI--------------------------NERLG----EDYLE 155 (269)
T ss_pred EEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcch--------------------------hhhhc----ccHHH
Confidence 3588999999999999999987 88888888765543210 00000 01111
Q ss_pred HHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHH-hccCCCCCCCcccccccccCCCCchhHHHHHHhhhhh
Q 048209 194 KFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYAS-KFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWEL 272 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (349)
...... +...-.........++++.+..... ..... ...
T Consensus 156 ~ike~G-----------fid~~~rkG~y~~rvt~eSlmdrLntd~h~a----------------------------clk- 195 (269)
T KOG4667|consen 156 RIKEQG-----------FIDVGPRKGKYGYRVTEESLMDRLNTDIHEA----------------------------CLK- 195 (269)
T ss_pred HHHhCC-----------ceecCcccCCcCceecHHHHHHHHhchhhhh----------------------------hcC-
Confidence 111111 1111111122333344444433221 11100 000
Q ss_pred ccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccch
Q 048209 273 MAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQ 332 (349)
Q Consensus 273 ~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 332 (349)
- ..+||||-++|..|.++|.+.+.+ +++.+|+- ++.++||+.|....
T Consensus 196 --I----d~~C~VLTvhGs~D~IVPve~Ake------fAk~i~nH-~L~iIEgADHnyt~ 242 (269)
T KOG4667|consen 196 --I----DKQCRVLTVHGSEDEIVPVEDAKE------FAKIIPNH-KLEIIEGADHNYTG 242 (269)
T ss_pred --c----CccCceEEEeccCCceeechhHHH------HHHhccCC-ceEEecCCCcCccc
Confidence 1 558999999999999999999988 78889996 99999999998643
No 65
>PRK11460 putative hydrolase; Provisional
Probab=99.83 E-value=4.6e-19 Score=140.08 Aligned_cols=177 Identities=12% Similarity=0.149 Sum_probs=120.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCC---------CCcc---hHHHHHHHHHHHHH---
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS---------VTSY---TALHLVGDLIGLLD--- 107 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~---------~~~~---~~~~~~~~~~~~~~--- 107 (349)
.|.||++||++++...|..+++.|.+.++.+..++.+|...+..... .... .+.+..+.+.++++
T Consensus 16 ~~~vIlLHG~G~~~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 95 (232)
T PRK11460 16 QQLLLLFHGVGDNPVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVRYWQ 95 (232)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999988766666666666533211100 0001 12222233333333
Q ss_pred -HhCC--ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHh
Q 048209 108 -KLGI--HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFA 184 (349)
Q Consensus 108 -~~~~--~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
..+. ++++++|||+||.+++.++.++|+.+.++|.+++.... ..
T Consensus 96 ~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~-~~-------------------------------- 142 (232)
T PRK11460 96 QQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS-LP-------------------------------- 142 (232)
T ss_pred HhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc-cc--------------------------------
Confidence 3333 47999999999999999999999877878776542110 00
Q ss_pred ccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHH
Q 048209 185 QIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAI 264 (349)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (349)
T Consensus 143 -------------------------------------------------------------------------------- 142 (232)
T PRK11460 143 -------------------------------------------------------------------------------- 142 (232)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHH
Q 048209 265 IIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYE 344 (349)
Q Consensus 265 ~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~ 344 (349)
. .. ..+.|+++++|++|.++|.+.+.+..+ .+.+...++ ++++++++||.+..+..+.+.+.+.+
T Consensus 143 ----~----~~----~~~~pvli~hG~~D~vvp~~~~~~~~~--~L~~~g~~~-~~~~~~~~gH~i~~~~~~~~~~~l~~ 207 (232)
T PRK11460 143 ----E----TA----PTATTIHLIHGGEDPVIDVAHAVAAQE--ALISLGGDV-TLDIVEDLGHAIDPRLMQFALDRLRY 207 (232)
T ss_pred ----c----cc----cCCCcEEEEecCCCCccCHHHHHHHHH--HHHHCCCCe-EEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 0 00 336899999999999999988776542 244444455 88889999999987777777777777
Q ss_pred HHH
Q 048209 345 FIK 347 (349)
Q Consensus 345 fl~ 347 (349)
+|.
T Consensus 208 ~l~ 210 (232)
T PRK11460 208 TVP 210 (232)
T ss_pred Hcc
Confidence 664
No 66
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.83 E-value=3.4e-19 Score=141.77 Aligned_cols=104 Identities=21% Similarity=0.145 Sum_probs=86.8
Q ss_pred CCeEEEEccCCCc----hhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH---hCCceeE
Q 048209 43 GPVVLFIHGFPEL----WYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK---LGIHQVF 115 (349)
Q Consensus 43 ~~~iv~~hG~~~~----~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 115 (349)
.++|||+||++.. ...|..+++.|+++||.|+++|+||||.|.... ...++..+++|+..+++. .+.++++
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~--~~~~~~~~~~Dv~~ai~~L~~~~~~~v~ 102 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDF--AAARWDVWKEDVAAAYRWLIEQGHPPVT 102 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcc--ccCCHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 4689999999864 356778889999999999999999999997654 244677788887775544 4667999
Q ss_pred EEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 116 LVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 116 lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
++||||||.+++.+|.++|++++++|+++|...
T Consensus 103 LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~ 135 (266)
T TIGR03101 103 LWGLRLGALLALDAANPLAAKCNRLVLWQPVVS 135 (266)
T ss_pred EEEECHHHHHHHHHHHhCccccceEEEeccccc
Confidence 999999999999999999999999999998654
No 67
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=2.7e-19 Score=135.07 Aligned_cols=223 Identities=18% Similarity=0.208 Sum_probs=145.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-HhCCceeEEEEech
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLD-KLGIHQVFLVGHDW 121 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lvG~S~ 121 (349)
++.++++|-.|+++..|+.+...|... ..++.+++||+|.-...+ ...+++.+++.+...+. -...+++.+.||||
T Consensus 7 ~~~L~cfP~AGGsa~~fr~W~~~lp~~-iel~avqlPGR~~r~~ep--~~~di~~Lad~la~el~~~~~d~P~alfGHSm 83 (244)
T COG3208 7 RLRLFCFPHAGGSASLFRSWSRRLPAD-IELLAVQLPGRGDRFGEP--LLTDIESLADELANELLPPLLDAPFALFGHSM 83 (244)
T ss_pred CceEEEecCCCCCHHHHHHHHhhCCch-hheeeecCCCcccccCCc--ccccHHHHHHHHHHHhccccCCCCeeecccch
Confidence 568999999999999999999988874 999999999999876555 56789999999998888 45556899999999
Q ss_pred HHHHHHHHHhhCcc---ccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHHHHHHHhhh
Q 048209 122 GALIAWYFCLFRPD---RVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCL 198 (349)
Q Consensus 122 Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
||++|.+.|.+... ...++.+.+...+.... .. .+.......+++.+...
T Consensus 84 Ga~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~-~~--------------------------~i~~~~D~~~l~~l~~l 136 (244)
T COG3208 84 GAMLAFEVARRLERAGLPPRALFISGCRAPHYDR-GK--------------------------QIHHLDDADFLADLVDL 136 (244)
T ss_pred hHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcc-cC--------------------------CccCCCHHHHHHHHHHh
Confidence 99999999987432 25556655543331111 00 01111222333333322
Q ss_pred hccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHHhhhhhccCCCC
Q 048209 199 RIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTG 278 (349)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 278 (349)
....+ .-.-++|..+.+...+.. .++... .|+.. ..
T Consensus 137 gG~p~------------------e~led~El~~l~LPilRA-D~~~~e-~Y~~~--------------------~~---- 172 (244)
T COG3208 137 GGTPP------------------ELLEDPELMALFLPILRA-DFRALE-SYRYP--------------------PP---- 172 (244)
T ss_pred CCCCh------------------HHhcCHHHHHHHHHHHHH-HHHHhc-ccccC--------------------CC----
Confidence 21110 000122333333322211 000000 01000 01
Q ss_pred cccCCcEEEEEecCCccccCCcchhhhcccccccccC-CceeEEEecCCCcccchhcHHHHHHHHHHHHH
Q 048209 279 VQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVP-YLQEVVVMEGVAHFINQEKAEEVGAHIYEFIK 347 (349)
Q Consensus 279 ~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~ 347 (349)
..++||+.++.|++|..+..+....| .+... .. ++.+++| ||+...++.+++...|.+.++
T Consensus 173 ~pl~~pi~~~~G~~D~~vs~~~~~~W------~~~t~~~f-~l~~fdG-gHFfl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 173 APLACPIHAFGGEKDHEVSRDELGAW------REHTKGDF-TLRVFDG-GHFFLNQQREEVLARLEQHLA 234 (244)
T ss_pred CCcCcceEEeccCcchhccHHHHHHH------HHhhcCCc-eEEEecC-cceehhhhHHHHHHHHHHHhh
Confidence 17899999999999999998887764 44444 45 8999997 999999999999999998875
No 68
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.81 E-value=5e-18 Score=130.82 Aligned_cols=110 Identities=27% Similarity=0.398 Sum_probs=98.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCc-eeEEEEechH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIH-QVFLVGHDWG 122 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lvG~S~G 122 (349)
.+||-+||.+++..+|+.+.+.|.+.|.+++.+++||+|.+.+..+ ..++..+...-+.++++.++++ +++.+|||.|
T Consensus 36 gTVv~~hGsPGSH~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~-~~~~n~er~~~~~~ll~~l~i~~~~i~~gHSrG 114 (297)
T PF06342_consen 36 GTVVAFHGSPGSHNDFKYIRPPLDEAGIRFIGINYPGFGFTPGYPD-QQYTNEERQNFVNALLDELGIKGKLIFLGHSRG 114 (297)
T ss_pred eeEEEecCCCCCccchhhhhhHHHHcCeEEEEeCCCCCCCCCCCcc-cccChHHHHHHHHHHHHHcCCCCceEEEEeccc
Confidence 3799999999999999999999999999999999999999998775 6788899999999999999886 6889999999
Q ss_pred HHHHHHHHhhCccccceeeeeccCCCCCCCCCCc
Q 048209 123 ALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRP 156 (349)
Q Consensus 123 g~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 156 (349)
|-.|+.+|..+| ..|+++++|+........++
T Consensus 115 cenal~la~~~~--~~g~~lin~~G~r~HkgIrp 146 (297)
T PF06342_consen 115 CENALQLAVTHP--LHGLVLINPPGLRPHKGIRP 146 (297)
T ss_pred hHHHHHHHhcCc--cceEEEecCCccccccCcCH
Confidence 999999999996 67999999987665554444
No 69
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.81 E-value=1e-18 Score=137.51 Aligned_cols=243 Identities=19% Similarity=0.225 Sum_probs=132.5
Q ss_pred CCeEEEEccCCCchh--hHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh----CCceeEE
Q 048209 43 GPVVLFIHGFPELWY--SWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL----GIHQVFL 116 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~--~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l 116 (349)
+|.||++||+.|++. ..+.+.+.+.++||.|+++|+|||+.+..... .-+. .-..+|+..+++.+ ...++..
T Consensus 75 ~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p-~~yh-~G~t~D~~~~l~~l~~~~~~r~~~a 152 (345)
T COG0429 75 KPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSP-RLYH-SGETEDIRFFLDWLKARFPPRPLYA 152 (345)
T ss_pred CceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCc-ceec-ccchhHHHHHHHHHHHhCCCCceEE
Confidence 689999999866543 35667789999999999999999999875431 1111 11224444444443 5679999
Q ss_pred EEechHH-HHHHHHHhhCcc-ccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHHHHHH
Q 048209 117 VGHDWGA-LIAWYFCLFRPD-RVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKK 194 (349)
Q Consensus 117 vG~S~Gg-~ia~~~a~~~p~-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
+|.|+|| +++..++.+..+ .+.+.+.++.+.+.........+.+. ...+...-...+.+.
T Consensus 153 vG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s------------------~~ly~r~l~~~L~~~ 214 (345)
T COG0429 153 VGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFS------------------LRLYSRYLLRNLKRN 214 (345)
T ss_pred EEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchh------------------hhhhHHHHHHHHHHH
Confidence 9999999 555555544322 46677777766553111000000000 000000000011111
Q ss_pred HhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHH------HHHHhc--cCCCCCCCcccccccccCCCCchhHHHHH
Q 048209 195 FLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVN------YYASKF--NQKGFTGPVNYYRCSDLYVPKTYTMAIII 266 (349)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (349)
..... ... .. ..+... .+.+. .|-..+ ...++.+...||+....
T Consensus 215 ~~~kl-~~l---~~-----------~~p~~~-~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs------------ 266 (345)
T COG0429 215 AARKL-KEL---EP-----------SLPGTV-LAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASS------------ 266 (345)
T ss_pred HHHHH-Hhc---Cc-----------ccCcHH-HHHHHhhchHHhccceeeecccCCCcHHHHHHhccc------------
Confidence 11100 000 00 000000 01111 111111 11234444444544433
Q ss_pred HhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchh----cHH-HHHHH
Q 048209 267 KENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQE----KAE-EVGAH 341 (349)
Q Consensus 267 ~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e----~~~-~~~~~ 341 (349)
.. .|.+|.+|+|+|++.+|++++++..... -....|++ .+...+.+||..++. +|. ...+.
T Consensus 267 ----~~----~L~~Ir~PtLii~A~DDP~~~~~~iP~~-----~~~~np~v-~l~~t~~GGHvGfl~~~~~~~~~W~~~r 332 (345)
T COG0429 267 ----LP----LLPKIRKPTLIINAKDDPFMPPEVIPKL-----QEMLNPNV-LLQLTEHGGHVGFLGGKLLHPQMWLEQR 332 (345)
T ss_pred ----cc----cccccccceEEEecCCCCCCChhhCCcc-----hhcCCCce-EEEeecCCceEEeccCccccchhhHHHH
Confidence 11 2339999999999999999999877652 12267888 888888899988776 343 56667
Q ss_pred HHHHHH
Q 048209 342 IYEFIK 347 (349)
Q Consensus 342 i~~fl~ 347 (349)
+.+|+.
T Consensus 333 i~~~l~ 338 (345)
T COG0429 333 ILDWLD 338 (345)
T ss_pred HHHHHH
Confidence 777775
No 70
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.81 E-value=5e-18 Score=129.12 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=76.2
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhC-CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh-C-CceeEEEEe
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSR-GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL-G-IHQVFLVGH 119 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~lvG~ 119 (349)
.+++++.||..........+...|..+ +++|+.+|+.|+|.|.+.++ .....+.++.+-+.++.- | .++++|+|+
T Consensus 60 ~~~lly~hGNa~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~ps--E~n~y~Di~avye~Lr~~~g~~~~Iil~G~ 137 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGKPS--ERNLYADIKAVYEWLRNRYGSPERIILYGQ 137 (258)
T ss_pred ceEEEEcCCcccchHHHHHHHHHHhhcccceEEEEecccccccCCCcc--cccchhhHHHHHHHHHhhcCCCceEEEEEe
Confidence 489999999976666555555666552 69999999999999998774 223333333333333332 3 568999999
Q ss_pred chHHHHHHHHHhhCccccceeeeeccCC
Q 048209 120 DWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 120 S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
|+|+..++.+|++.| ++++|+.+|..
T Consensus 138 SiGt~~tv~Lasr~~--~~alVL~SPf~ 163 (258)
T KOG1552|consen 138 SIGTVPTVDLASRYP--LAAVVLHSPFT 163 (258)
T ss_pred cCCchhhhhHhhcCC--cceEEEeccch
Confidence 999999999999998 99999999854
No 71
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.80 E-value=2.8e-18 Score=134.84 Aligned_cols=195 Identities=21% Similarity=0.240 Sum_probs=119.9
Q ss_pred HHHHHHHHhhCCceEEeeCCCCCCCCCCCC--CCCcchHHHHHHHHHHHHHHh------CCceeEEEEechHHHHHHHHH
Q 048209 59 WRNQLLYLSSRGYRAIAPDLRGYGDTDAPP--SVTSYTALHLVGDLIGLLDKL------GIHQVFLVGHDWGALIAWYFC 130 (349)
Q Consensus 59 ~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~ia~~~a 130 (349)
|......|+++||.|+.+|+||.+...... ......-...++|+.+.++.+ +.+++.++|||+||.+++.++
T Consensus 3 f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~ 82 (213)
T PF00326_consen 3 FNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAA 82 (213)
T ss_dssp -SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhh
Confidence 445677888999999999999987532211 000111123344454444444 335899999999999999999
Q ss_pred hhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHHHHH-HHhhhhccCCCCCccC
Q 048209 131 LFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMK-KFLCLRIAKPLCIPKD 209 (349)
Q Consensus 131 ~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 209 (349)
..+|+.++++|..++............. +.. ........
T Consensus 83 ~~~~~~f~a~v~~~g~~d~~~~~~~~~~--------------------------------~~~~~~~~~~~~-------- 122 (213)
T PF00326_consen 83 TQHPDRFKAAVAGAGVSDLFSYYGTTDI--------------------------------YTKAEYLEYGDP-------- 122 (213)
T ss_dssp HHTCCGSSEEEEESE-SSTTCSBHHTCC--------------------------------HHHGHHHHHSST--------
T ss_pred cccceeeeeeeccceecchhcccccccc--------------------------------cccccccccCcc--------
Confidence 9999999999999987765432100000 000 00000000
Q ss_pred cCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHHhhhhhccCCCCcc--cCCcEEE
Q 048209 210 TGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTGVQ--IEVPVKF 287 (349)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--i~~Pvl~ 287 (349)
+...+....... .... .+ +++|+|+
T Consensus 123 --------------~~~~~~~~~~s~-----------------------------------~~~~----~~~~~~~P~li 149 (213)
T PF00326_consen 123 --------------WDNPEFYRELSP-----------------------------------ISPA----DNVQIKPPVLI 149 (213)
T ss_dssp --------------TTSHHHHHHHHH-----------------------------------GGGG----GGCGGGSEEEE
T ss_pred --------------chhhhhhhhhcc-----------------------------------cccc----ccccCCCCEEE
Confidence 000011110000 0000 14 7899999
Q ss_pred EEecCCccccCCcchhhhcccccccccCCceeEEEecCCCccc-chhcHHHHHHHHHHHHHhC
Q 048209 288 IVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFI-NQEKAEEVGAHIYEFIKKF 349 (349)
Q Consensus 288 i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~-~~e~~~~~~~~i~~fl~~~ 349 (349)
++|++|..||++.+.++++. +.+..... ++.++|++||.. ..++..+..+.+.+|++++
T Consensus 150 ~hG~~D~~Vp~~~s~~~~~~--L~~~g~~~-~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 150 IHGENDPRVPPSQSLRLYNA--LRKAGKPV-ELLIFPGEGHGFGNPENRRDWYERILDFFDKY 209 (213)
T ss_dssp EEETTBSSSTTHHHHHHHHH--HHHTTSSE-EEEEETT-SSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred EccCCCCccCHHHHHHHHHH--HHhcCCCE-EEEEcCcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999887743 66666667 999999999954 4566778999999999763
No 72
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.79 E-value=4.5e-18 Score=152.96 Aligned_cols=234 Identities=20% Similarity=0.245 Sum_probs=150.2
Q ss_pred hcccceEEEee-CCeeEEEEeeCC---C-----CeEEEEccCCCchhh--HHHHHHHHhhCCceEEeeCCCCCCCCCC--
Q 048209 20 MEKIEHTTVGT-NGINMHVASIGT---G-----PVVLFIHGFPELWYS--WRNQLLYLSSRGYRAIAPDLRGYGDTDA-- 86 (349)
Q Consensus 20 ~~~~~~~~~~~-~g~~~~~~~~g~---~-----~~iv~~hG~~~~~~~--~~~~~~~L~~~G~~v~~~D~~G~G~s~~-- 86 (349)
+...+...+.. ||.+++.+...+ . |.||++||.+..... |......|+.+||.|+.+|+||.+.-..
T Consensus 362 ~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F 441 (620)
T COG1506 362 LAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREF 441 (620)
T ss_pred cCCceEEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHH
Confidence 44445444444 788998776653 1 799999999855444 6777889999999999999997654211
Q ss_pred ---CC-CCCcchHHHHHHHHHHHHHHhCC---ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCcccc
Q 048209 87 ---PP-SVTSYTALHLVGDLIGLLDKLGI---HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNN 159 (349)
Q Consensus 87 ---~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 159 (349)
.. +......+|+.+.+. ++...+. +++.++|||+||.+++.++...| .+++.+...+..............
T Consensus 442 ~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~ 519 (620)
T COG1506 442 ADAIRGDWGGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEG 519 (620)
T ss_pred HHhhhhccCCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchh
Confidence 11 123345666666666 5555432 48999999999999999999998 677776666644321110000000
Q ss_pred chhhcccchhhhhccCCccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccC
Q 048209 160 FRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQ 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
+.. ....... .+.+ ..+.|...
T Consensus 520 ~~~----------------------------~~~~~~~-----------------------~~~~----~~~~~~~~--- 541 (620)
T COG1506 520 LRF----------------------------DPEENGG-----------------------GPPE----DREKYEDR--- 541 (620)
T ss_pred hcC----------------------------CHHHhCC-----------------------Cccc----ChHHHHhc---
Confidence 000 0000000 0000 00011100
Q ss_pred CCCCCCcccccccccCCCCchhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCcee
Q 048209 240 KGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQE 319 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
+...... ++++|+|+|||++|..||.+.+..+++. |......+ +
T Consensus 542 -----------------------------sp~~~~~----~i~~P~LliHG~~D~~v~~~q~~~~~~a--L~~~g~~~-~ 585 (620)
T COG1506 542 -----------------------------SPIFYAD----NIKTPLLLIHGEEDDRVPIEQAEQLVDA--LKRKGKPV-E 585 (620)
T ss_pred -----------------------------Chhhhhc----ccCCCEEEEeecCCccCChHHHHHHHHH--HHHcCceE-E
Confidence 1111112 8999999999999999999998887743 66666777 9
Q ss_pred EEEecCCCcccch-hcHHHHHHHHHHHHHhC
Q 048209 320 VVVMEGVAHFINQ-EKAEEVGAHIYEFIKKF 349 (349)
Q Consensus 320 ~~~~~~~gH~~~~-e~~~~~~~~i~~fl~~~ 349 (349)
++++|+.||.+.. ++...+.+.+.+|+.++
T Consensus 586 ~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~ 616 (620)
T COG1506 586 LVVFPDEGHGFSRPENRVKVLKEILDWFKRH 616 (620)
T ss_pred EEEeCCCCcCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999998765 67888889999998764
No 73
>PLN00021 chlorophyllase
Probab=99.79 E-value=6.6e-18 Score=138.21 Aligned_cols=106 Identities=25% Similarity=0.345 Sum_probs=77.3
Q ss_pred CCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH-------hCCce
Q 048209 41 GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK-------LGIHQ 113 (349)
Q Consensus 41 g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 113 (349)
++.|+|||+||++.+...|..+++.|+++||.|+++|++|++.+.... ...+..+..+.+.+.++. .+.++
T Consensus 50 g~~PvVv~lHG~~~~~~~y~~l~~~Las~G~~VvapD~~g~~~~~~~~--~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~ 127 (313)
T PLN00021 50 GTYPVLLFLHGYLLYNSFYSQLLQHIASHGFIVVAPQLYTLAGPDGTD--EIKDAAAVINWLSSGLAAVLPEGVRPDLSK 127 (313)
T ss_pred CCCCEEEEECCCCCCcccHHHHHHHHHhCCCEEEEecCCCcCCCCchh--hHHHHHHHHHHHHhhhhhhcccccccChhh
Confidence 346899999999999999999999999999999999999875432111 111222223333332222 23468
Q ss_pred eEEEEechHHHHHHHHHhhCcc-----ccceeeeeccCCC
Q 048209 114 VFLVGHDWGALIAWYFCLFRPD-----RVKALVNMSVPFP 148 (349)
Q Consensus 114 ~~lvG~S~Gg~ia~~~a~~~p~-----~v~~lvl~~~~~~ 148 (349)
++++||||||.+|+.+|.++++ +++++|++++...
T Consensus 128 v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g 167 (313)
T PLN00021 128 LALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDG 167 (313)
T ss_pred eEEEEECcchHHHHHHHhhccccccccceeeEEeeccccc
Confidence 9999999999999999998874 5788998887643
No 74
>PLN02442 S-formylglutathione hydrolase
Probab=99.79 E-value=1.3e-17 Score=135.96 Aligned_cols=119 Identities=23% Similarity=0.302 Sum_probs=83.2
Q ss_pred CCeeEEEEee-------CCCCeEEEEccCCCchhhHHHH---HHHHhhCCceEEeeCCCCCCC-----CCC---------
Q 048209 31 NGINMHVASI-------GTGPVVLFIHGFPELWYSWRNQ---LLYLSSRGYRAIAPDLRGYGD-----TDA--------- 86 (349)
Q Consensus 31 ~g~~~~~~~~-------g~~~~iv~~hG~~~~~~~~~~~---~~~L~~~G~~v~~~D~~G~G~-----s~~--------- 86 (349)
-|..+.|..+ .+.|+|+|+||++++...|... ...+...|+.|+.+|..++|. +..
T Consensus 28 l~~~~~~~vy~P~~~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~~ 107 (283)
T PLN02442 28 LGCSMTFSVYFPPASDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAGF 107 (283)
T ss_pred cCCceEEEEEcCCcccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcce
Confidence 4555666554 1258999999999888777443 356667799999999887661 110
Q ss_pred ----CCC------CCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 87 ----PPS------VTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 87 ----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
... ...+..+++.+.+....+.++.++++++||||||..|+.++.++|+.+++++.+++...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~ 180 (283)
T PLN02442 108 YLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANP 180 (283)
T ss_pred eeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCc
Confidence 000 001123344444555555567788999999999999999999999999999999987553
No 75
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.79 E-value=5.1e-17 Score=132.34 Aligned_cols=107 Identities=23% Similarity=0.343 Sum_probs=78.4
Q ss_pred CCeEEEEccCCCchhhHHHH--HHHH-hhCCceEEeeCC--CCCCCCCCCC------------------CCCcchHHH-H
Q 048209 43 GPVVLFIHGFPELWYSWRNQ--LLYL-SSRGYRAIAPDL--RGYGDTDAPP------------------SVTSYTALH-L 98 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~--~~~L-~~~G~~v~~~D~--~G~G~s~~~~------------------~~~~~~~~~-~ 98 (349)
.|+|+++||++++...|... +..+ .+.|+.|+++|. +|+|.+.... ....+...+ +
T Consensus 42 ~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~ 121 (275)
T TIGR02821 42 VPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYI 121 (275)
T ss_pred CCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHHHH
Confidence 58999999999998887543 3344 456999999998 5555332110 001223333 4
Q ss_pred HHHHHHHHHH---hCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 99 VGDLIGLLDK---LGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 99 ~~~~~~~~~~---~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
++++..+++. ++.++++++||||||.+|+.++.++|+.+++++++++....
T Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~ 175 (275)
T TIGR02821 122 VQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAP 175 (275)
T ss_pred HHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCc
Confidence 6778777776 35568999999999999999999999999999999887543
No 76
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.77 E-value=9.7e-19 Score=128.08 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=90.9
Q ss_pred cceEEEeeCCeeEEEE-ee--CCCCeEEEEccCCCchhhHHHHHHHHh-hCCceEEeeCCCCCCCCCCCCCCCcchHHHH
Q 048209 23 IEHTTVGTNGINMHVA-SI--GTGPVVLFIHGFPELWYSWRNQLLYLS-SRGYRAIAPDLRGYGDTDAPPSVTSYTALHL 98 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~-~~--g~~~~iv~~hG~~~~~~~~~~~~~~L~-~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~ 98 (349)
.+....+-|..++.-+ .. .+.|+++++||..++-....++++.+- .-+.+|+.+++||+|.|.+.++... +
T Consensus 55 e~i~l~T~D~vtL~a~~~~~E~S~pTlLyfh~NAGNmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~GspsE~G-----L 129 (300)
T KOG4391|consen 55 ERIELRTRDKVTLDAYLMLSESSRPTLLYFHANAGNMGHRLPIARVFYVNLKMNVLIVSYRGYGKSEGSPSEEG-----L 129 (300)
T ss_pred eEEEEEcCcceeEeeeeecccCCCceEEEEccCCCcccchhhHHHHHHHHcCceEEEEEeeccccCCCCccccc-----e
Confidence 3444455567776533 22 247999999999999888877777554 3478999999999999998774332 3
Q ss_pred HHHHHHHHHHh------CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 99 VGDLIGLLDKL------GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 99 ~~~~~~~~~~~------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
.-|-+++++++ ...+++|.|-|+||.+|+.+|++..+++.++|+-+....
T Consensus 130 ~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~S 185 (300)
T KOG4391|consen 130 KLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLS 185 (300)
T ss_pred eccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhcc
Confidence 33445555555 345899999999999999999999999999998886543
No 77
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.77 E-value=3.5e-18 Score=146.24 Aligned_cols=250 Identities=13% Similarity=0.066 Sum_probs=145.9
Q ss_pred CCeEEEEccCCCchhhH-----HHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh----CCce
Q 048209 43 GPVVLFIHGFPELWYSW-----RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL----GIHQ 113 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~-----~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 113 (349)
+.|||+||++-.....+ ..+++.|.++||+|+++|+++-+...+ .++++++++.+.+.++.+ |.++
T Consensus 215 ~~PLLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~r-----~~~ldDYv~~i~~Ald~V~~~tG~~~ 289 (560)
T TIGR01839 215 ARPLLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAHR-----EWGLSTYVDALKEAVDAVRAITGSRD 289 (560)
T ss_pred CCcEEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChhhc-----CCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 57999999998777666 678999999999999999998776653 456777776666666655 7789
Q ss_pred eEEEEechHHHHHHH----HHhhCcc-ccceeeeeccCCCCCCCCCCcccc---chhhcccchhhhhccCC-ccHHHHHh
Q 048209 114 VFLVGHDWGALIAWY----FCLFRPD-RVKALVNMSVPFPPRNPAVRPLNN---FRAVYGDDYYICRFQEP-GEIEEEFA 184 (349)
Q Consensus 114 ~~lvG~S~Gg~ia~~----~a~~~p~-~v~~lvl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~ 184 (349)
+.++|+|+||.++.. +++++++ +|++++++.++.+.........-. ....... ........+ ..+...+.
T Consensus 290 vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~e~-~~~~~G~lpg~~ma~~F~ 368 (560)
T TIGR01839 290 LNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAAKR-RSYQAGVLDGSEMAKVFA 368 (560)
T ss_pred eeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHHHHHH-HHHhcCCcCHHHHHHHHH
Confidence 999999999999886 7888886 799999999988865432111000 0000000 001111122 22333444
Q ss_pred ccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHH
Q 048209 185 QIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAI 264 (349)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (349)
......++..+...............+..+..+....+ ......|...+....+...-. +...
T Consensus 369 ~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lP----g~~~~e~l~ly~~N~L~~pG~-l~v~------------ 431 (560)
T TIGR01839 369 WMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLP----AAFHGDLLDMFKSNPLTRPDA-LEVC------------ 431 (560)
T ss_pred hcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccch----HHHHHHHHHHHhcCCCCCCCC-EEEC------------
Confidence 44444444443322221100000111233333333333 233333433322222211000 0000
Q ss_pred HHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCccc
Q 048209 265 IIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFI 330 (349)
Q Consensus 265 ~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 330 (349)
-...+|++|++|++++.|++|.++|++.+.. +.+.+.+.++++..+ +||..
T Consensus 432 --------G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~------~~~l~gs~~~fvl~~-gGHIg 482 (560)
T TIGR01839 432 --------GTPIDLKKVKCDSFSVAGTNDHITPWDAVYR------SALLLGGKRRFVLSN-SGHIQ 482 (560)
T ss_pred --------CEEechhcCCCCeEEEecCcCCcCCHHHHHH------HHHHcCCCeEEEecC-CCccc
Confidence 0112355999999999999999999998876 445554433666665 59964
No 78
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.76 E-value=7.9e-17 Score=131.76 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=74.6
Q ss_pred CCeEEEEccCCCchh--hHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh----CCceeEE
Q 048209 43 GPVVLFIHGFPELWY--SWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL----GIHQVFL 116 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~--~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l 116 (349)
.|.||++||+.+++. ..+.++..+++.||++++++.||+|+|.-... ..++ ....+|+.++++++ ...++..
T Consensus 125 ~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTp-r~f~-ag~t~Dl~~~v~~i~~~~P~a~l~a 202 (409)
T KOG1838|consen 125 DPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTP-RLFT-AGWTEDLREVVNHIKKRYPQAPLFA 202 (409)
T ss_pred CcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCC-ceee-cCCHHHHHHHHHHHHHhCCCCceEE
Confidence 599999999876543 35667778888899999999999999875542 2222 22334444444444 5568999
Q ss_pred EEechHHHHHHHHHhhCcc--ccceeeeeccCCC
Q 048209 117 VGHDWGALIAWYFCLFRPD--RVKALVNMSVPFP 148 (349)
Q Consensus 117 vG~S~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~ 148 (349)
+|.||||.+...|..+..+ .+.+.+.++.+.+
T Consensus 203 vG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 203 VGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWD 236 (409)
T ss_pred EEecchHHHHHHHhhhccCCCCceeEEEEeccch
Confidence 9999999999999987544 3566666665554
No 79
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=132.58 Aligned_cols=135 Identities=24% Similarity=0.460 Sum_probs=117.8
Q ss_pred hhhhhHhhhcccceEEEeeCCeeEEEEeeCC--------CCeEEEEccCCCchhhHHHHHHHHhhC---C------ceEE
Q 048209 12 TKRKHKQTMEKIEHTTVGTNGINMHVASIGT--------GPVVLFIHGFPELWYSWRNQLLYLSSR---G------YRAI 74 (349)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~--------~~~iv~~hG~~~~~~~~~~~~~~L~~~---G------~~v~ 74 (349)
+.+..+..+.+++....++.|.++|+....+ -.|++++|||+++...|..+++.|... | |.|+
T Consensus 113 ~W~e~e~~ln~f~qykTeIeGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI 192 (469)
T KOG2565|consen 113 KWKEREEFLNQFKQYKTEIEGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVI 192 (469)
T ss_pred cHHHHHHHHHhhhhhhhhhcceeEEEEEecCCccccCCcccceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEe
Confidence 4566778888999999999999999997653 248999999999999999999988753 2 7899
Q ss_pred eeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 75 APDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 75 ~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
++.+||+|.|+.+.. ...+..+.|.-+..++-.+|..++.+-|..||+.|+..+|..+|+.|.|+-+-.+..
T Consensus 193 ~PSlPGygwSd~~sk-~GFn~~a~ArvmrkLMlRLg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm~~~ 264 (469)
T KOG2565|consen 193 APSLPGYGWSDAPSK-TGFNAAATARVMRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNMCFV 264 (469)
T ss_pred ccCCCCcccCcCCcc-CCccHHHHHHHHHHHHHHhCcceeEeecCchHHHHHHHHHhhcchhhhHhhhccccc
Confidence 999999999998775 567888899999999999999999999999999999999999999999987655443
No 80
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.74 E-value=5e-17 Score=127.12 Aligned_cols=263 Identities=16% Similarity=0.180 Sum_probs=141.2
Q ss_pred EEeeCCeeEEEEeeCC----CCeEEEEccCCCchhh-HHHHH-----HHHhhCCceEEeeCCCCCCCCCCC--CCCCcch
Q 048209 27 TVGTNGINMHVASIGT----GPVVLFIHGFPELWYS-WRNQL-----LYLSSRGYRAIAPDLRGYGDTDAP--PSVTSYT 94 (349)
Q Consensus 27 ~~~~~g~~~~~~~~g~----~~~iv~~hG~~~~~~~-~~~~~-----~~L~~~G~~v~~~D~~G~G~s~~~--~~~~~~~ 94 (349)
.++..-..+++...|+ +|++|-.|-.|.+... |..+. ..+.++ |.++-+|.||+..-... .+....+
T Consensus 3 ~v~t~~G~v~V~v~G~~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~-f~i~Hi~aPGqe~ga~~~p~~y~yPs 81 (283)
T PF03096_consen 3 DVETPYGSVHVTVQGDPKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQN-FCIYHIDAPGQEEGAATLPEGYQYPS 81 (283)
T ss_dssp EEEETTEEEEEEEESS--TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHTT-SEEEEEE-TTTSTT-----TT-----
T ss_pred eeccCceEEEEEEEecCCCCCceEEEeccccccchHHHHHHhcchhHHHHhhc-eEEEEEeCCCCCCCcccccccccccC
Confidence 4555555777777774 7899999999988765 76664 345554 99999999999765433 2223458
Q ss_pred HHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhcc
Q 048209 95 ALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQ 174 (349)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
.+++++++..++++++++.++.+|.-.|+.|..++|..+|++|.|+||+++....... .+++...+........-
T Consensus 82 md~LAe~l~~Vl~~f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw----~Ew~~~K~~~~~L~~~g- 156 (283)
T PF03096_consen 82 MDQLAEMLPEVLDHFGLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGW----MEWFYQKLSSWLLYSYG- 156 (283)
T ss_dssp HHHHHCTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---H----HHHHHHHHH-------C-
T ss_pred HHHHHHHHHHHHHhCCccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccH----HHHHHHHHhcccccccc-
Confidence 9999999999999999999999999999999999999999999999999987654321 11111111100000000
Q ss_pred CCccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCC-CCCcccccccc
Q 048209 175 EPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGF-TGPVNYYRCSD 253 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 253 (349)
+......-++...+...... ...+..+.|...+.+... .....++..+.
T Consensus 157 --------mt~~~~d~Ll~h~Fg~~~~~----------------------~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~ 206 (283)
T PF03096_consen 157 --------MTSSVKDYLLWHYFGKEEEE----------------------NNSDLVQTYRQHLDERINPKNLALFLNSYN 206 (283)
T ss_dssp --------TTS-HHHHHHHHHS-HHHHH----------------------CT-HHHHHHHHHHHT-TTHHHHHHHHHHHH
T ss_pred --------cccchHHhhhhccccccccc----------------------ccHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 00001111222222211110 011333344333322110 11111111111
Q ss_pred cCCCCchhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchh
Q 048209 254 LYVPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQE 333 (349)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e 333 (349)
. ..+.....+ ...||+|++.|+..+..... .+. -.+.-|....+..++++|=.+..|
T Consensus 207 ~------------R~DL~~~~~----~~~c~vLlvvG~~Sp~~~~v--v~~-----ns~Ldp~~ttllkv~dcGglV~eE 263 (283)
T PF03096_consen 207 S------------RTDLSIERP----SLGCPVLLVVGDNSPHVDDV--VEM-----NSKLDPTKTTLLKVADCGGLVLEE 263 (283)
T ss_dssp T-----------------SECT----TCCS-EEEEEETTSTTHHHH--HHH-----HHHS-CCCEEEEEETT-TT-HHHH
T ss_pred c------------cccchhhcC----CCCCCeEEEEecCCcchhhH--HHH-----HhhcCcccceEEEecccCCccccc
Confidence 1 112222222 66799999999998876532 221 223334434889999999999999
Q ss_pred cHHHHHHHHHHHHHh
Q 048209 334 KAEEVGAHIYEFIKK 348 (349)
Q Consensus 334 ~~~~~~~~i~~fl~~ 348 (349)
+|..+.+.+.-||+.
T Consensus 264 qP~klaea~~lFlQG 278 (283)
T PF03096_consen 264 QPGKLAEAFKLFLQG 278 (283)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHcc
Confidence 999999999999975
No 81
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.74 E-value=8.7e-16 Score=118.31 Aligned_cols=270 Identities=17% Similarity=0.192 Sum_probs=168.1
Q ss_pred cceEEEeeCCeeEEEEeeCC----CCeEEEEccCCCchhh-HHHHH-----HHHhhCCceEEeeCCCCCCCCCC--CCCC
Q 048209 23 IEHTTVGTNGINMHVASIGT----GPVVLFIHGFPELWYS-WRNQL-----LYLSSRGYRAIAPDLRGYGDTDA--PPSV 90 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g~----~~~iv~~hG~~~~~~~-~~~~~-----~~L~~~G~~v~~~D~~G~G~s~~--~~~~ 90 (349)
+++..++..-..+++...|+ +|++|-.|..+.+... |..+. ..+.++ |.|+-+|.||+-.-.. +.+.
T Consensus 22 ~~e~~V~T~~G~v~V~V~Gd~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~~p~~y 100 (326)
T KOG2931|consen 22 CQEHDVETAHGVVHVTVYGDPKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPSFPEGY 100 (326)
T ss_pred ceeeeeccccccEEEEEecCCCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCccCCCCC
Confidence 35555666556777777774 6899999999987765 76664 456666 9999999999955432 2222
Q ss_pred CcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhh
Q 048209 91 TSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYI 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (349)
..-+.+++++++..++++++.+.++-+|.-.|+.|..++|..+|++|-|+||+++....... .++....
T Consensus 101 ~yPsmd~LAd~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gw----iew~~~K------- 169 (326)
T KOG2931|consen 101 PYPSMDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGW----IEWAYNK------- 169 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchH----HHHHHHH-------
Confidence 35589999999999999999999999999999999999999999999999999986554321 1111111
Q ss_pred hhccCCccHHHHHhccchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCC-CCCcccc
Q 048209 171 CRFQEPGEIEEEFAQIDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGF-TGPVNYY 249 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 249 (349)
+ ....+........+..++-.......... -..+..+.|...+..... .+...++
T Consensus 170 --~-----~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~-----------------~~~diVq~Yr~~l~~~~N~~Nl~~fl 225 (326)
T KOG2931|consen 170 --V-----SSNLLYYYGMTQGVKDYLLAHHFGKEELG-----------------NNSDIVQEYRQHLGERLNPKNLALFL 225 (326)
T ss_pred --H-----HHHHHHhhchhhhHHHHHHHHHhcccccc-----------------ccHHHHHHHHHHHHhcCChhHHHHHH
Confidence 0 11111122222233333322221111000 023445555554443211 1111122
Q ss_pred cccccCCCCchhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhccccccc-ccCCceeEEEecCCCc
Q 048209 250 RCSDLYVPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKK-YVPYLQEVVVMEGVAH 328 (349)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gH 328 (349)
..+.. ..+.....+.....++||+|++.|+..+.+.... + ... .-|....+..+.++|-
T Consensus 226 ~ayn~------------R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~~~vv--~------~n~~Ldp~~ttllk~~d~g~ 285 (326)
T KOG2931|consen 226 NAYNG------------RRDLSIERPKLGTTLKCPVLLVVGDNSPHVSAVV--E------CNSKLDPTYTTLLKMADCGG 285 (326)
T ss_pred HHhcC------------CCCccccCCCcCccccccEEEEecCCCchhhhhh--h------hhcccCcccceEEEEcccCC
Confidence 22221 0011222221112567999999999988765321 1 222 2232227788889999
Q ss_pred ccchhcHHHHHHHHHHHHHh
Q 048209 329 FINQEKAEEVGAHIYEFIKK 348 (349)
Q Consensus 329 ~~~~e~~~~~~~~i~~fl~~ 348 (349)
.+..++|..+.+.+.-|++.
T Consensus 286 l~~e~qP~kl~ea~~~FlqG 305 (326)
T KOG2931|consen 286 LVQEEQPGKLAEAFKYFLQG 305 (326)
T ss_pred cccccCchHHHHHHHHHHcc
Confidence 99999999999999999864
No 82
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.73 E-value=6.1e-17 Score=127.59 Aligned_cols=182 Identities=25% Similarity=0.308 Sum_probs=116.4
Q ss_pred CCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCC-CCCcch--------HHHHHHHHHHHHHHh---
Q 048209 42 TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP-SVTSYT--------ALHLVGDLIGLLDKL--- 109 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~-~~~~~~--------~~~~~~~~~~~~~~~--- 109 (349)
+.|.||++|++.+-....+.+++.|+++||.|+++|+-+-....... ...... .+...+++.+.++.+
T Consensus 13 ~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~ 92 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYLRAQ 92 (218)
T ss_dssp SEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCT
T ss_pred CCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 46899999999887788888999999999999999986433311111 000000 234556676666666
Q ss_pred C---CceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhcc
Q 048209 110 G---IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQI 186 (349)
Q Consensus 110 ~---~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
. .+++.++|+|+||.+++.+|... ..+++.|..-+.....
T Consensus 93 ~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~~~------------------------------------ 135 (218)
T PF01738_consen 93 PEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSPPP------------------------------------ 135 (218)
T ss_dssp TTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSSGG------------------------------------
T ss_pred cccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCCCC------------------------------------
Confidence 2 34899999999999999999987 5788888777611100
Q ss_pred chHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHH
Q 048209 187 DTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIII 266 (349)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (349)
T Consensus 136 -------------------------------------------------------------------------------- 135 (218)
T PF01738_consen 136 -------------------------------------------------------------------------------- 135 (218)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchh--------cHHHH
Q 048209 267 KENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQE--------KAEEV 338 (349)
Q Consensus 267 ~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e--------~~~~~ 338 (349)
....... ++++|+++++|++|+.++++....+. +.+.+..... ++++++|++|-+... ..++.
T Consensus 136 --~~~~~~~----~~~~P~l~~~g~~D~~~~~~~~~~~~--~~l~~~~~~~-~~~~y~ga~HgF~~~~~~~~~~~aa~~a 206 (218)
T PF01738_consen 136 --PPLEDAP----KIKAPVLILFGENDPFFPPEEVEALE--EALKAAGVDV-EVHVYPGAGHGFANPSRPPYDPAAAEDA 206 (218)
T ss_dssp --GHHHHGG----G--S-EEEEEETT-TTS-HHHHHHHH--HHHHCTTTTE-EEEEETT--TTTTSTTSTT--HHHHHHH
T ss_pred --cchhhhc----ccCCCEeecCccCCCCCChHHHHHHH--HHHHhcCCcE-EEEECCCCcccccCCCCcccCHHHHHHH
Confidence 0000011 77899999999999999988755543 2254555667 999999999966532 34678
Q ss_pred HHHHHHHHHhC
Q 048209 339 GAHIYEFIKKF 349 (349)
Q Consensus 339 ~~~i~~fl~~~ 349 (349)
.+.+.+||++|
T Consensus 207 ~~~~~~ff~~~ 217 (218)
T PF01738_consen 207 WQRTLAFFKRH 217 (218)
T ss_dssp HHHHHHHHCC-
T ss_pred HHHHHHHHHhc
Confidence 88899999875
No 83
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.71 E-value=3.3e-16 Score=122.98 Aligned_cols=107 Identities=25% Similarity=0.335 Sum_probs=63.0
Q ss_pred CCeEEEEccCCCchhhHHHHHH-HHhhCCceEEeeCCCC------CCC---C-----CCCCCC--CcchHHHHHHHHHHH
Q 048209 43 GPVVLFIHGFPELWYSWRNQLL-YLSSRGYRAIAPDLRG------YGD---T-----DAPPSV--TSYTALHLVGDLIGL 105 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~-~L~~~G~~v~~~D~~G------~G~---s-----~~~~~~--~~~~~~~~~~~~~~~ 105 (349)
.+.|||+||+|.+...|..... .+......++.++-|. .|. + ...... ..-.+...++.+.++
T Consensus 14 ~~lvi~LHG~G~~~~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l~~l 93 (216)
T PF02230_consen 14 KPLVILLHGYGDSEDLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERLDEL 93 (216)
T ss_dssp SEEEEEE--TTS-HHHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCcchhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHHHHHH
Confidence 6899999999999977766555 2222346666665431 122 0 000100 112334444455555
Q ss_pred HHHh-----CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 106 LDKL-----GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 106 ~~~~-----~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
++.. ..+++++.|+|+||++|+.++.++|+.+.++|.+++....
T Consensus 94 i~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~ 142 (216)
T PF02230_consen 94 IDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPP 142 (216)
T ss_dssp HHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TT
T ss_pred HHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccc
Confidence 5532 3458999999999999999999999999999999986543
No 84
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.71 E-value=4.9e-16 Score=129.49 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=86.2
Q ss_pred CeEEEEccCCCchhh-HHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechH
Q 048209 44 PVVLFIHGFPELWYS-WRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWG 122 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~-~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~G 122 (349)
|+||++..+.+.... -+.+++.|.+ |+.|+..|+..-+...... ..++++++++-+.+.++++|.+ ++++|+|+|
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~--~~f~ldDYi~~l~~~i~~~G~~-v~l~GvCqg 178 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPLSA--GKFDLEDYIDYLIEFIRFLGPD-IHVIAVCQP 178 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhc--CCCCHHHHHHHHHHHHHHhCCC-CcEEEEchh
Confidence 799999999876654 4778889988 9999999998766553323 5778999999999999999877 999999999
Q ss_pred HHHHHHHHhhC-----ccccceeeeeccCCCCCC
Q 048209 123 ALIAWYFCLFR-----PDRVKALVNMSVPFPPRN 151 (349)
Q Consensus 123 g~ia~~~a~~~-----p~~v~~lvl~~~~~~~~~ 151 (349)
|..++.+++.. |.+++++++++++.+...
T Consensus 179 G~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~ 212 (406)
T TIGR01849 179 AVPVLAAVALMAENEPPAQPRSMTLMGGPIDARA 212 (406)
T ss_pred hHHHHHHHHHHHhcCCCCCcceEEEEecCccCCC
Confidence 99977666654 667999999999988754
No 85
>PRK10162 acetyl esterase; Provisional
Probab=99.71 E-value=4.6e-15 Score=123.15 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=73.7
Q ss_pred CCeEEEEccCC---CchhhHHHHHHHHhh-CCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCC--ceeEE
Q 048209 43 GPVVLFIHGFP---ELWYSWRNQLLYLSS-RGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGI--HQVFL 116 (349)
Q Consensus 43 ~~~iv~~hG~~---~~~~~~~~~~~~L~~-~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l 116 (349)
.|+||++||.+ ++...|..+++.|++ .|+.|+.+|+|......-+. ...+..+.++.+.+..+.++. +++++
T Consensus 81 ~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~~p~--~~~D~~~a~~~l~~~~~~~~~d~~~i~l 158 (318)
T PRK10162 81 QATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEARFPQ--AIEEIVAVCCYFHQHAEDYGINMSRIGF 158 (318)
T ss_pred CCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCCCCC--cHHHHHHHHHHHHHhHHHhCCChhHEEE
Confidence 58899999977 566778888998887 49999999999654432211 111222233334443445554 48999
Q ss_pred EEechHHHHHHHHHhhC------ccccceeeeeccCCCC
Q 048209 117 VGHDWGALIAWYFCLFR------PDRVKALVNMSVPFPP 149 (349)
Q Consensus 117 vG~S~Gg~ia~~~a~~~------p~~v~~lvl~~~~~~~ 149 (349)
+|+|+||.+|+.++... +..++++|++.+....
T Consensus 159 ~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~ 197 (318)
T PRK10162 159 AGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGL 197 (318)
T ss_pred EEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCC
Confidence 99999999999988753 3568999999886553
No 86
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.69 E-value=3.9e-15 Score=122.13 Aligned_cols=121 Identities=21% Similarity=0.182 Sum_probs=73.5
Q ss_pred EEEeeCCeeEEEEee------CCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCC-----------
Q 048209 26 TTVGTNGINMHVASI------GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP----------- 88 (349)
Q Consensus 26 ~~~~~~g~~~~~~~~------g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~----------- 88 (349)
.+-..+|.+++-+-. |+-|.||.+||.++....|...+ .++..||.|+.+|.||+|......
T Consensus 60 ~f~s~~g~~V~g~l~~P~~~~~~~Pavv~~hGyg~~~~~~~~~~-~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~ 138 (320)
T PF05448_consen 60 SFESFDGSRVYGWLYRPKNAKGKLPAVVQFHGYGGRSGDPFDLL-PWAAAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGH 138 (320)
T ss_dssp EEEEGGGEEEEEEEEEES-SSSSEEEEEEE--TT--GGGHHHHH-HHHHTT-EEEEE--TTTSSSS-B-SSBSSS-SSSS
T ss_pred EEEccCCCEEEEEEEecCCCCCCcCEEEEecCCCCCCCCccccc-ccccCCeEEEEecCCCCCCCCCCccccCCCCCccH
Confidence 334445666653322 12378999999999887776654 366789999999999999322111
Q ss_pred ------C-CCcchHHHHHHHHHHHHHHh------CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 89 ------S-VTSYTALHLVGDLIGLLDKL------GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 89 ------~-~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
+ ...+-...+..|....++.+ +.+++.+.|.|+||.+++.+|+..| +|++++...|...
T Consensus 139 ~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~ 210 (320)
T PF05448_consen 139 ITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLC 210 (320)
T ss_dssp TTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSS
T ss_pred HhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCcc
Confidence 0 11222333445555555544 2358999999999999999999886 6999998887554
No 87
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.68 E-value=6.4e-15 Score=121.68 Aligned_cols=124 Identities=22% Similarity=0.283 Sum_probs=80.7
Q ss_pred cceEEEeeCCeeEEEEe-eCC----CCeEEEEccCCCchhhH-HHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHH
Q 048209 23 IEHTTVGTNGINMHVAS-IGT----GPVVLFIHGFPELWYSW-RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTAL 96 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~-~g~----~~~iv~~hG~~~~~~~~-~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~ 96 (349)
++.-.+...|.+|.... ..+ .|+||++-|+-+-...+ ..+.+.|...|+.++++|.||.|.|...+- ..+.+
T Consensus 165 i~~v~iP~eg~~I~g~LhlP~~~~p~P~VIv~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l--~~D~~ 242 (411)
T PF06500_consen 165 IEEVEIPFEGKTIPGYLHLPSGEKPYPTVIVCGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPL--TQDSS 242 (411)
T ss_dssp EEEEEEEETTCEEEEEEEESSSSS-EEEEEEE--TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S---S-CC
T ss_pred cEEEEEeeCCcEEEEEEEcCCCCCCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCEEEEEccCCCcccccCCC--CcCHH
Confidence 55556677787775442 222 36677777777766554 445567899999999999999999865431 22233
Q ss_pred HHHHHHHHHHHHhC---CceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 97 HLVGDLIGLLDKLG---IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 97 ~~~~~~~~~~~~~~---~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
.+.+.+.+.+.... ..+|.++|.|+||.+|.++|..++.+++++|..++++.
T Consensus 243 ~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh 297 (411)
T PF06500_consen 243 RLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVH 297 (411)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---S
T ss_pred HHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHh
Confidence 44555555555543 34899999999999999999999899999999998754
No 88
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.67 E-value=1.1e-15 Score=128.94 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=81.5
Q ss_pred CCeEEEEccCCCch--hhHHH-HHHHHhh--CCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh------CC
Q 048209 43 GPVVLFIHGFPELW--YSWRN-QLLYLSS--RGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL------GI 111 (349)
Q Consensus 43 ~~~iv~~hG~~~~~--~~~~~-~~~~L~~--~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 111 (349)
+|++|++||++.+. ..|.. +++.|.. ..++|+++|++|+|.+..+.. .......++++.++++.+ +.
T Consensus 41 ~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a--~~~t~~vg~~la~lI~~L~~~~gl~l 118 (442)
T TIGR03230 41 TKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTS--AAYTKLVGKDVAKFVNWMQEEFNYPW 118 (442)
T ss_pred CCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCccc--cccHHHHHHHHHHHHHHHHHhhCCCC
Confidence 79999999998753 45765 5555542 259999999999998865432 223356667777777654 35
Q ss_pred ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 112 HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 112 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
++++||||||||.+|..++.+.|++|.++++++|+.+
T Consensus 119 ~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP 155 (442)
T TIGR03230 119 DNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGP 155 (442)
T ss_pred CcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCC
Confidence 7999999999999999999999999999999999754
No 89
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.67 E-value=4.6e-15 Score=107.25 Aligned_cols=171 Identities=20% Similarity=0.325 Sum_probs=117.4
Q ss_pred CCeEEEEccCC-----CchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCC-c-eeE
Q 048209 43 GPVVLFIHGFP-----ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGI-H-QVF 115 (349)
Q Consensus 43 ~~~iv~~hG~~-----~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 115 (349)
.|..|++|.-+ .+...-..+++.|.+.||.++.+|+||.|+|+..-+.. ..-.+.+....++++.... . ...
T Consensus 28 ~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~G-iGE~~Da~aaldW~~~~hp~s~~~~ 106 (210)
T COG2945 28 APIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNG-IGELEDAAAALDWLQARHPDSASCW 106 (210)
T ss_pred CceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCC-cchHHHHHHHHHHHHhhCCCchhhh
Confidence 57888888643 33445667788999999999999999999999876422 2222222333334433322 2 346
Q ss_pred EEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccchHHHHHHH
Q 048209 116 LVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKF 195 (349)
Q Consensus 116 lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
+.|+|+|+.|++.+|.+.|+ +...|.+.++....
T Consensus 107 l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~--------------------------------------------- 140 (210)
T COG2945 107 LAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAY--------------------------------------------- 140 (210)
T ss_pred hcccchHHHHHHHHHHhccc-ccceeeccCCCCch---------------------------------------------
Confidence 89999999999999999875 55555555432210
Q ss_pred hhhhccCCCCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHHHhhhhhccC
Q 048209 196 LCLRIAKPLCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAP 275 (349)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (349)
+...
T Consensus 141 -------------------------------------------------------------------------dfs~--- 144 (210)
T COG2945 141 -------------------------------------------------------------------------DFSF--- 144 (210)
T ss_pred -------------------------------------------------------------------------hhhh---
Confidence 0000
Q ss_pred CCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHH
Q 048209 276 WTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIK 347 (349)
Q Consensus 276 ~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~ 347 (349)
+....+|.++|+|+.|.+++.....++. +. ... +++++++++||++. +-.++.+.|.+||.
T Consensus 145 --l~P~P~~~lvi~g~~Ddvv~l~~~l~~~------~~-~~~-~~i~i~~a~HFF~g-Kl~~l~~~i~~~l~ 205 (210)
T COG2945 145 --LAPCPSPGLVIQGDADDVVDLVAVLKWQ------ES-IKI-TVITIPGADHFFHG-KLIELRDTIADFLE 205 (210)
T ss_pred --ccCCCCCceeEecChhhhhcHHHHHHhh------cC-CCC-ceEEecCCCceecc-cHHHHHHHHHHHhh
Confidence 1145789999999999999988776642 32 333 78899999999765 56788888999884
No 90
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=99.67 E-value=3.1e-15 Score=124.45 Aligned_cols=305 Identities=18% Similarity=0.195 Sum_probs=169.3
Q ss_pred cceEEEeeCCeeEEEEee----CCCCeEEEEccCCCchhhHHHH------HHHHhhCCceEEeeCCCCCCCCCCCC----
Q 048209 23 IEHTTVGTNGINMHVASI----GTGPVVLFIHGFPELWYSWRNQ------LLYLSSRGYRAIAPDLRGYGDTDAPP---- 88 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~----g~~~~iv~~hG~~~~~~~~~~~------~~~L~~~G~~v~~~D~~G~G~s~~~~---- 88 (349)
.++.+.+.||+.+...+. +++|+|++.||+.+++..|-.. +=.|+.+||+|+.-+.||.-.|.+..
T Consensus 49 E~h~V~T~DgYiL~lhRIp~~~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~~ 128 (403)
T KOG2624|consen 49 EEHEVTTEDGYILTLHRIPRGKKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSP 128 (403)
T ss_pred EEEEEEccCCeEEEEeeecCCCCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccchhhcccCC
Confidence 456667778987766554 3469999999999999998544 34688999999999999988875422
Q ss_pred ----CCCcchHHHHHH-HHHHHHHHh----CCceeEEEEechHHHHHHHHHhhCcc---ccceeeeeccCCCCCCCCCCc
Q 048209 89 ----SVTSYTALHLVG-DLIGLLDKL----GIHQVFLVGHDWGALIAWYFCLFRPD---RVKALVNMSVPFPPRNPAVRP 156 (349)
Q Consensus 89 ----~~~~~~~~~~~~-~~~~~~~~~----~~~~~~lvG~S~Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~~~~~~~~ 156 (349)
++..+++.+++. |+-+.++++ +.++++.||||.|+...+.++...|+ +|+..++++|+...... ...
T Consensus 129 ~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k~~-~~~ 207 (403)
T KOG2624|consen 129 SSDKEFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPKHI-KSL 207 (403)
T ss_pred cCCcceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhccc-ccH
Confidence 245567777654 565555554 77899999999999999998888765 79999999998855411 111
Q ss_pred cccchhhc-cc-chhhhhccCCcc------HH---HHHhc-cchHHHHHHHhhhhccCCCCCccCcCCCCCCCCCCCCCC
Q 048209 157 LNNFRAVY-GD-DYYICRFQEPGE------IE---EEFAQ-IDTARLMKKFLCLRIAKPLCIPKDTGLSTVPDPSALPSW 224 (349)
Q Consensus 157 ~~~~~~~~-~~-~~~~~~~~~~~~------~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (349)
.......+ .. ......+..... .. ..+.. ......+...+-....+......+. ...-.-....+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~-~~~~~~~~h~pag 286 (403)
T KOG2624|consen 208 LNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNT-TLLPVYLAHLPAG 286 (403)
T ss_pred HHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhh-cccchhhccCCCC
Confidence 11111100 00 001111111000 00 00001 0011111111111111100000000 0000001112222
Q ss_pred CChhhHHHHHHhccCCCCCCCcccc-cccccCCCCchhHHHHHHhhhhhccCCCCcccCCcEEEEEecCCccccCCcchh
Q 048209 225 LSEEDVNYYASKFNQKGFTGPVNYY-RCSDLYVPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKE 303 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~ 303 (349)
.+......+.+......++.-..-. +.... . .........+.++++||.+.+|++|.++.++++..
T Consensus 287 tSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~------------Y-~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~ 353 (403)
T KOG2624|consen 287 TSVKNIVHWAQIVRSGKFRKYDYGSKRNLKH------------Y-GQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLI 353 (403)
T ss_pred ccHHHHHHHHHHhcCCCccccCCCccccHhh------------c-CCCCCCCCCccccccCEEEEecCCcccCCHHHHHH
Confidence 4445666666655443332111000 00000 0 11222233456899999999999999999999886
Q ss_pred hhcccccccccCCc--eeEEEecCCCcccc---hhcHHHHHHHHHHHHHh
Q 048209 304 YIHDGGFKKYVPYL--QEVVVMEGVAHFIN---QEKAEEVGAHIYEFIKK 348 (349)
Q Consensus 304 ~~~~~~~~~~~~~~--~~~~~~~~~gH~~~---~e~~~~~~~~i~~fl~~ 348 (349)
. ....++. +....+++-.|+-+ .+.++++.+.|.+.++.
T Consensus 354 ~------~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~ 397 (403)
T KOG2624|consen 354 L------LLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRL 397 (403)
T ss_pred H------HHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHh
Confidence 3 3333433 12233788899744 35689999999998873
No 91
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.65 E-value=1e-14 Score=114.27 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=73.9
Q ss_pred CCCeEEEEccCCCchhhHH---HHHHHHhhCCceEEeeCCCCCCCCCCCCCC--------CcchHHHHHHHHHHHHHHhC
Q 048209 42 TGPVVLFIHGFPELWYSWR---NQLLYLSSRGYRAIAPDLRGYGDTDAPPSV--------TSYTALHLVGDLIGLLDKLG 110 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~~---~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 110 (349)
+.|+||++||.+++...+. .+...+.+.||.|+++|++|++.+...... ......++.+.+..+.+..+
T Consensus 12 ~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (212)
T TIGR01840 12 PRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANYS 91 (212)
T ss_pred CCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhcC
Confidence 4689999999998877765 244455567999999999998754321100 00111222222222223333
Q ss_pred --CceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 111 --IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 111 --~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
.++++|+|||+||.+++.++.++|+.+.+++.+++...
T Consensus 92 id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~ 131 (212)
T TIGR01840 92 IDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPY 131 (212)
T ss_pred cChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcc
Confidence 34899999999999999999999999999998887643
No 92
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=1.7e-14 Score=113.49 Aligned_cols=104 Identities=27% Similarity=0.292 Sum_probs=80.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCC-CCCCCCC-CC---C-----cchHHHHHHHHHHHHHHhC--
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGY-GDTDAPP-SV---T-----SYTALHLVGDLIGLLDKLG-- 110 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~-G~s~~~~-~~---~-----~~~~~~~~~~~~~~~~~~~-- 110 (349)
.|.||++|++.+-....+.+++.|++.||.|+++|+-+. |.+.... .. . ..+..+...|+.+.++.+.
T Consensus 27 ~P~VIv~hei~Gl~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~ 106 (236)
T COG0412 27 FPGVIVLHEIFGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQ 106 (236)
T ss_pred CCEEEEEecccCCchHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhC
Confidence 389999999999888999999999999999999998763 3332221 00 0 1223567778888887772
Q ss_pred ----CceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 111 ----IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 111 ----~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
.+++.++|+||||.+++.++.+.| .+++.|..-+..
T Consensus 107 ~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~ 146 (236)
T COG0412 107 PQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGL 146 (236)
T ss_pred CCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCC
Confidence 457999999999999999999988 688888776643
No 93
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.64 E-value=1.1e-15 Score=123.50 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=84.0
Q ss_pred CeeEEEEeeCC-CCeEEEEccCCCch-hhHHHH-HHHH-hhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048209 32 GINMHVASIGT-GPVVLFIHGFPELW-YSWRNQ-LLYL-SSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLD 107 (349)
Q Consensus 32 g~~~~~~~~g~-~~~iv~~hG~~~~~-~~~~~~-~~~L-~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~ 107 (349)
+..+.+....+ +|++|++||++++. ..|... .+.+ .+.+++|+++|++|++.+.... ...+.....+++..+++
T Consensus 24 ~~~~~~~~f~~~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~--a~~~~~~v~~~la~~l~ 101 (275)
T cd00707 24 PSSLKNSNFNPSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQ--AVNNTRVVGAELAKFLD 101 (275)
T ss_pred hhhhhhcCCCCCCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHH--HHHhHHHHHHHHHHHHH
Confidence 45566655554 78999999999887 567554 4444 4457999999999874332111 12234445556655555
Q ss_pred Hh------CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 108 KL------GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 108 ~~------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
.+ +.+++++|||||||.+|..++.++|++|.++++++|+...
T Consensus 102 ~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p~ 149 (275)
T cd00707 102 FLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGPL 149 (275)
T ss_pred HHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCccc
Confidence 54 3468999999999999999999999999999999987653
No 94
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=99.63 E-value=1.6e-15 Score=123.27 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=88.8
Q ss_pred CCeEEEEccCCCchhhH-----HHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEE
Q 048209 43 GPVVLFIHGFPELWYSW-----RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLV 117 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~-----~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 117 (349)
++|++++|.+-.....| ..+++.|.++|+.|+.+++++-..+.......+|-.+.+.+.+..+.+..|.+++.++
T Consensus 107 ~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~edYi~e~l~~aid~v~~itg~~~Inli 186 (445)
T COG3243 107 KRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYILEGLSEAIDTVKDITGQKDINLI 186 (445)
T ss_pred CCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhhhccHHHHHHHHHHHHHHHHHHHhCcccccee
Confidence 56999999987666554 5678899999999999999988777664433444445555666777777788999999
Q ss_pred EechHHHHHHHHHhhCccc-cceeeeeccCCCCCCC
Q 048209 118 GHDWGALIAWYFCLFRPDR-VKALVNMSVPFPPRNP 152 (349)
Q Consensus 118 G~S~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~~~~~ 152 (349)
|+|.||+++..+++.++.+ |++++++.++.+....
T Consensus 187 GyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~~ 222 (445)
T COG3243 187 GYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSHA 222 (445)
T ss_pred eEecchHHHHHHHHhhhhcccccceeeecchhhccc
Confidence 9999999999999988887 9999999998876554
No 95
>COG0400 Predicted esterase [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=110.37 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=70.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCC--CCCCCC--CCCCCCcc-------hHHHHHHHHHHHHHHhCC
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLR--GYGDTD--APPSVTSY-------TALHLVGDLIGLLDKLGI 111 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~--G~G~s~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 111 (349)
.|+||++||+|++...+.+....+... +.++.+-=+ -.|.-. ...+...+ ..+.+++.+....++.+.
T Consensus 18 ~~~iilLHG~Ggde~~~~~~~~~~~P~-~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~~~gi 96 (207)
T COG0400 18 APLLILLHGLGGDELDLVPLPELILPN-ATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAEEYGI 96 (207)
T ss_pred CcEEEEEecCCCChhhhhhhhhhcCCC-CeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHHHhCC
Confidence 568999999999998888866555554 555543211 000000 00011122 233444555555556666
Q ss_pred --ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 112 --HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 112 --~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
++++++|+|.|+++++....++|+.++++|++++....
T Consensus 97 ~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~ 136 (207)
T COG0400 97 DSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPL 136 (207)
T ss_pred ChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCC
Confidence 69999999999999999999999999999999986554
No 96
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.57 E-value=7.4e-14 Score=110.66 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=69.5
Q ss_pred eeEEEEeeCC--CCeEEEEccCCCc---hhhHHHHHHHHhhCCceEEeeCCC----CCCCCCCCCCCCcchHHHHHHHHH
Q 048209 33 INMHVASIGT--GPVVLFIHGFPEL---WYSWRNQLLYLSSRGYRAIAPDLR----GYGDTDAPPSVTSYTALHLVGDLI 103 (349)
Q Consensus 33 ~~~~~~~~g~--~~~iv~~hG~~~~---~~~~~~~~~~L~~~G~~v~~~D~~----G~G~s~~~~~~~~~~~~~~~~~~~ 103 (349)
....|..... ...||||.|++.. ......+++.|.+.||.|+-+-++ |+| ..+++..++||.
T Consensus 21 ~afe~~~~~~~~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G---------~~SL~~D~~eI~ 91 (303)
T PF08538_consen 21 VAFEFTSSSSSAPNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWG---------TSSLDRDVEEIA 91 (303)
T ss_dssp EEEEEEEE-TTSSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS----------S--HHHHHHHHH
T ss_pred eEEEecCCCCCCCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcC---------cchhhhHHHHHH
Confidence 3344444442 4589999999754 345778888998889999999865 333 335677777777
Q ss_pred HHHHHh--------CCceeEEEEechHHHHHHHHHhhCc-----cccceeeeeccCCCCCC
Q 048209 104 GLLDKL--------GIHQVFLVGHDWGALIAWYFCLFRP-----DRVKALVNMSVPFPPRN 151 (349)
Q Consensus 104 ~~~~~~--------~~~~~~lvG~S~Gg~ia~~~a~~~p-----~~v~~lvl~~~~~~~~~ 151 (349)
++++++ +.++|+|+|||.|+.-+++|+.... ..|+++|+-+|..+...
T Consensus 92 ~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa 152 (303)
T PF08538_consen 92 QLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREA 152 (303)
T ss_dssp HHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTS
T ss_pred HHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhH
Confidence 777765 2458999999999999999988642 56999999999887644
No 97
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.57 E-value=3.1e-14 Score=127.62 Aligned_cols=112 Identities=24% Similarity=0.265 Sum_probs=91.4
Q ss_pred ccceEEEeeCCeeEEEEeeCCC-----------CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCC---
Q 048209 22 KIEHTTVGTNGINMHVASIGTG-----------PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAP--- 87 (349)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~g~~-----------~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~--- 87 (349)
.....+...++.+++|...|.+ |+||++||++++...|..+++.|.++||+|+++|+||||.|...
T Consensus 417 ~vp~~~~~p~~~~i~~~~~~~g~~~~~~p~~g~P~VVllHG~~g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~ 496 (792)
T TIGR03502 417 NVPVLLTTPNGPVIAAFRAGTGLETFAAPTDGWPVVIYQHGITGAKENALAFAGTLAAAGVATIAIDHPLHGARSFDANA 496 (792)
T ss_pred ccceEEEecCcchhhhhhcccccccccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEeCCCCCCcccccccc
Confidence 3556777888888888876542 48999999999999999999999989999999999999999443
Q ss_pred -------CCCC-----------cchHHHHHHHHHHHHHHhC----------------CceeEEEEechHHHHHHHHHhhC
Q 048209 88 -------PSVT-----------SYTALHLVGDLIGLLDKLG----------------IHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 88 -------~~~~-----------~~~~~~~~~~~~~~~~~~~----------------~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
.... ..++.+.+.|+..++..++ ..+++++||||||+++..++...
T Consensus 497 ~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 497 SGVNATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccCccceeccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 1111 1267889999998888876 24899999999999999999753
No 98
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.57 E-value=2.5e-14 Score=106.42 Aligned_cols=89 Identities=25% Similarity=0.297 Sum_probs=62.9
Q ss_pred EEEEccCCCch-hhHHHHHH-HHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHH
Q 048209 46 VLFIHGFPELW-YSWRNQLL-YLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGA 123 (349)
Q Consensus 46 iv~~hG~~~~~-~~~~~~~~-~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg 123 (349)
|+++||++++. ..|.+..+ .|... ++|...|+ + .-+.+++++.+.+.+..+. +++++||||+|+
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~------~------~P~~~~W~~~l~~~i~~~~-~~~ilVaHSLGc 66 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDW------D------NPDLDEWVQALDQAIDAID-EPTILVAHSLGC 66 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC--------T------S--HHHHHHHHHHCCHC-T-TTEEEEEETHHH
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEecccc------C------CCCHHHHHHHHHHHHhhcC-CCeEEEEeCHHH
Confidence 68999998875 56777664 56655 77777666 1 2256778888888877664 469999999999
Q ss_pred HHHHHHH-hhCccccceeeeeccCCC
Q 048209 124 LIAWYFC-LFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 124 ~ia~~~a-~~~p~~v~~lvl~~~~~~ 148 (349)
..++.++ .....+|.+++|++|+..
T Consensus 67 ~~~l~~l~~~~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 67 LTALRWLAEQSQKKVAGALLVAPFDP 92 (171)
T ss_dssp HHHHHHHHHTCCSSEEEEEEES--SC
T ss_pred HHHHHHHhhcccccccEEEEEcCCCc
Confidence 9999999 677789999999998743
No 99
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.56 E-value=2.3e-13 Score=108.43 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=83.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCc-eeEEEEechH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIH-QVFLVGHDWG 122 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lvG~S~G 122 (349)
.+|+++|+.+++...|..+++.|...++.|+.++.+|.+.... ...+++++++...+.+.....+ ++.|+|||+|
T Consensus 1 ~~lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~~----~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~G 76 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGRGDDEP----PPDSIEELASRYAEAIRARQPEGPYVLAGWSFG 76 (229)
T ss_dssp -EEEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTSCTTSH----EESSHHHHHHHHHHHHHHHTSSSSEEEEEETHH
T ss_pred CeEEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCCCCCCC----CCCCHHHHHHHHHHHhhhhCCCCCeeehccCcc
Confidence 4799999999999999999999987458999999999983322 3568999999888888776555 9999999999
Q ss_pred HHHHHHHHhhC---ccccceeeeeccCCC
Q 048209 123 ALIAWYFCLFR---PDRVKALVNMSVPFP 148 (349)
Q Consensus 123 g~ia~~~a~~~---p~~v~~lvl~~~~~~ 148 (349)
|.+|+++|.+- ...+..+++++++.+
T Consensus 77 g~lA~E~A~~Le~~G~~v~~l~liD~~~p 105 (229)
T PF00975_consen 77 GILAFEMARQLEEAGEEVSRLILIDSPPP 105 (229)
T ss_dssp HHHHHHHHHHHHHTT-SESEEEEESCSST
T ss_pred HHHHHHHHHHHHHhhhccCceEEecCCCC
Confidence 99999999863 345899999997554
No 100
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.55 E-value=1.7e-13 Score=104.58 Aligned_cols=122 Identities=23% Similarity=0.343 Sum_probs=82.2
Q ss_pred eEEEeeCCeeEEEEee------CCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCC----CCC-----
Q 048209 25 HTTVGTNGINMHVASI------GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDA----PPS----- 89 (349)
Q Consensus 25 ~~~~~~~g~~~~~~~~------g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~----~~~----- 89 (349)
..+...+|.+|.-+.. |..|.||-.||++++...|..+.. ++..||.|+..|.||.|.|.. ++.
T Consensus 59 vTf~g~~g~rI~gwlvlP~~~~~~~P~vV~fhGY~g~~g~~~~~l~-wa~~Gyavf~MdvRGQg~~~~dt~~~p~~~s~p 137 (321)
T COG3458 59 VTFTGYGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGGEWHDMLH-WAVAGYAVFVMDVRGQGSSSQDTADPPGGPSDP 137 (321)
T ss_pred EEEeccCCceEEEEEEeecccCCccceEEEEeeccCCCCCcccccc-ccccceeEEEEecccCCCccccCCCCCCCCcCC
Confidence 3444456677664432 335899999999999988866553 345599999999999998833 110
Q ss_pred ----------CCcchHHHHHHHHHHHHHH------hCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 90 ----------VTSYTALHLVGDLIGLLDK------LGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 90 ----------~~~~~~~~~~~~~~~~~~~------~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
...|-+.....|+..+++. ...+++.+.|.|+||.+++.+++..| +|+++++.-|...
T Consensus 138 G~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~~~~~~Pfl~ 211 (321)
T COG3458 138 GFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKAVVADYPFLS 211 (321)
T ss_pred ceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhcccccccccc
Confidence 0111122233333333333 24568999999999999999999887 7999887776543
No 101
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.55 E-value=4e-14 Score=90.38 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=64.6
Q ss_pred CeeEEEEeeCC----CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048209 32 GINMHVASIGT----GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLD 107 (349)
Q Consensus 32 g~~~~~~~~g~----~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~ 107 (349)
|.+|++..+.+ +.+|+++||++.++..|..+++.|+++||.|+++|+||||.|..... ..-+++++++|+..+++
T Consensus 1 G~~L~~~~w~p~~~~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg-~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 1 GTKLFYRRWKPENPPKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRG-HIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred CcEEEEEEecCCCCCCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCCCccc-ccCCHHHHHHHHHHHhC
Confidence 56788887764 45899999999999999999999999999999999999999986543 44578999999998764
No 102
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.55 E-value=1.4e-14 Score=107.77 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=81.7
Q ss_pred EeeCCeeEEEEeeCC---CC-eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCC-CCcchHHHHHH-H
Q 048209 28 VGTNGINMHVASIGT---GP-VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS-VTSYTALHLVG-D 101 (349)
Q Consensus 28 ~~~~g~~~~~~~~g~---~~-~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~-~~~~~~~~~~~-~ 101 (349)
.-.||..+....+.. .+ .++.-.+.+.....|++++..+.++||.|.++|+||.|.|+.... ...+.+.|++. |
T Consensus 11 ~~~DG~~l~~~~~pA~~~~~g~~~va~a~Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D 90 (281)
T COG4757 11 PAPDGYSLPGQRFPADGKASGRLVVAGATGVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLD 90 (281)
T ss_pred ccCCCccCccccccCCCCCCCcEEecccCCcchhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhhhhcc
Confidence 344788877666543 33 566666677778889999999999999999999999999987652 23456666654 6
Q ss_pred HHHHHHHh----CCceeEEEEechHHHHHHHHHhhCccccceeeeecc
Q 048209 102 LIGLLDKL----GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145 (349)
Q Consensus 102 ~~~~~~~~----~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 145 (349)
+.+.++.+ ...+...||||+||.+.-.+.. ++ +..+....+.
T Consensus 91 ~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~~-~~-k~~a~~vfG~ 136 (281)
T COG4757 91 FPAALAALKKALPGHPLYFVGHSFGGQALGLLGQ-HP-KYAAFAVFGS 136 (281)
T ss_pred hHHHHHHHHhhCCCCceEEeeccccceeeccccc-Cc-ccceeeEecc
Confidence 66666555 3458999999999987654444 33 4444444444
No 103
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=99.54 E-value=3.4e-13 Score=101.42 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=75.3
Q ss_pred EEee-CCeeEEEEeeCC-------CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCC-CCCCCCCCCCcchHHH
Q 048209 27 TVGT-NGINMHVASIGT-------GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGY-GDTDAPPSVTSYTALH 97 (349)
Q Consensus 27 ~~~~-~g~~~~~~~~g~-------~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~-G~s~~~~~~~~~~~~~ 97 (349)
.+.+ +|.+++.+...+ .++||+.+|++...+.+..++.+|+..||+|+.+|...| |.|++.- ..++...
T Consensus 6 vi~~~~~~~I~vwet~P~~~~~~~~~tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I--~eftms~ 83 (294)
T PF02273_consen 6 VIRLEDGRQIRVWETRPKNNEPKRNNTILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDI--NEFTMSI 83 (294)
T ss_dssp EEEETTTEEEEEEEE---TTS---S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B---------------HHH
T ss_pred eeEcCCCCEEEEeccCCCCCCcccCCeEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCCh--hhcchHH
Confidence 3444 688999998764 479999999999999999999999999999999999877 8888776 5778888
Q ss_pred HHHHHHHHHHHh---CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 98 LVGDLIGLLDKL---GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 98 ~~~~~~~~~~~~---~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
..+++..+++.+ |..++.|+.-|+.|.+|+..|++- .+.-+|+.-+...
T Consensus 84 g~~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~i--~lsfLitaVGVVn 135 (294)
T PF02273_consen 84 GKASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAADI--NLSFLITAVGVVN 135 (294)
T ss_dssp HHHHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTTS----SEEEEES--S-
T ss_pred hHHHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhcc--CcceEEEEeeeee
Confidence 888887777766 777999999999999999999954 3676776665443
No 104
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.54 E-value=6.9e-13 Score=92.80 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=79.3
Q ss_pred eEEEEccCCCc--hhhHHHHHHHHhhCCceEEeeCCCCCCCC----CCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEE
Q 048209 45 VVLFIHGFPEL--WYSWRNQLLYLSSRGYRAIAPDLRGYGDT----DAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVG 118 (349)
Q Consensus 45 ~iv~~hG~~~~--~~~~~~~~~~L~~~G~~v~~~D~~G~G~s----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG 118 (349)
+||+.||.+.+ +.....++..|+.+|+.|..++++-.-.. .+++.....-...+...+.++...+...+.++=|
T Consensus 16 tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l~~gpLi~GG 95 (213)
T COG3571 16 TILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGLAEGPLIIGG 95 (213)
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhcccCCceeecc
Confidence 78889998865 44578888999999999999998754221 1122212333455677777777777767999999
Q ss_pred echHHHHHHHHHhhCccccceeeeeccCCCCC
Q 048209 119 HDWGALIAWYFCLFRPDRVKALVNMSVPFPPR 150 (349)
Q Consensus 119 ~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 150 (349)
+||||.++.+.+......|+++++++-++.+.
T Consensus 96 kSmGGR~aSmvade~~A~i~~L~clgYPfhpp 127 (213)
T COG3571 96 KSMGGRVASMVADELQAPIDGLVCLGYPFHPP 127 (213)
T ss_pred ccccchHHHHHHHhhcCCcceEEEecCccCCC
Confidence 99999999999887655699999999776553
No 105
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.50 E-value=6.9e-13 Score=103.27 Aligned_cols=105 Identities=30% Similarity=0.396 Sum_probs=75.2
Q ss_pred CCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH-h------CCcee
Q 048209 42 TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK-L------GIHQV 114 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~ 114 (349)
.=|++||+||+......|..+++++++.||.|+.+|+...+...... ......+.++.+.+-++. + +..++
T Consensus 16 ~yPVv~f~~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~~~~--~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l 93 (259)
T PF12740_consen 16 TYPVVLFLHGFLLINSWYSQLLEHVASHGYIVVAPDLYSIGGPDDTD--EVASAAEVIDWLAKGLESKLPLGVKPDFSKL 93 (259)
T ss_pred CcCEEEEeCCcCCCHHHHHHHHHHHHhCceEEEEecccccCCCCcch--hHHHHHHHHHHHHhcchhhccccccccccce
Confidence 35899999999988888999999999999999999976543322111 111222222322221211 1 33489
Q ss_pred EEEEechHHHHHHHHHhhC-----ccccceeeeeccCCC
Q 048209 115 FLVGHDWGALIAWYFCLFR-----PDRVKALVNMSVPFP 148 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~~~-----p~~v~~lvl~~~~~~ 148 (349)
.|.|||.||-+|+.++... +.+++++|+++|.-.
T Consensus 94 ~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG 132 (259)
T PF12740_consen 94 ALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDG 132 (259)
T ss_pred EEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccc
Confidence 9999999999999999887 558999999998753
No 106
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.49 E-value=1.2e-13 Score=123.51 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=90.5
Q ss_pred eCCeeEEEEeeC-----CCCeEEEEccCCCchh---hH-HHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHH
Q 048209 30 TNGINMHVASIG-----TGPVVLFIHGFPELWY---SW-RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVG 100 (349)
Q Consensus 30 ~~g~~~~~~~~g-----~~~~iv~~hG~~~~~~---~~-~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~ 100 (349)
.||.+|++..+. +.|+||++||++.+.. .+ ......|.++||.|+++|+||+|.|+.... .++ ...++
T Consensus 4 ~DG~~L~~~~~~P~~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~--~~~-~~~~~ 80 (550)
T TIGR00976 4 RDGTRLAIDVYRPAGGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD--LLG-SDEAA 80 (550)
T ss_pred CCCCEEEEEEEecCCCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE--ecC-cccch
Confidence 478888755442 3589999999987653 12 234567888999999999999999987542 222 45677
Q ss_pred HHHHHHHHhCC-----ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 101 DLIGLLDKLGI-----HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 101 ~~~~~~~~~~~-----~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
|+.++++.+.. .++.++|||+||.+++.+|..+|..++++|..++....
T Consensus 81 D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~ 134 (550)
T TIGR00976 81 DGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDL 134 (550)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccch
Confidence 77777777632 48999999999999999999999999999998886543
No 107
>PRK10115 protease 2; Provisional
Probab=99.49 E-value=2.9e-12 Score=116.52 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=90.8
Q ss_pred EEeeCCeeEEEE-ee-------CCCCeEEEEccCCCchh--hHHHHHHHHhhCCceEEeeCCCCCCCCCCCC------CC
Q 048209 27 TVGTNGINMHVA-SI-------GTGPVVLFIHGFPELWY--SWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP------SV 90 (349)
Q Consensus 27 ~~~~~g~~~~~~-~~-------g~~~~iv~~hG~~~~~~--~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~------~~ 90 (349)
+...||.+|.+. .. ++.|.||++||..+... .|......|.++||.|+.++.||-|.-...- ..
T Consensus 421 ~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~ 500 (686)
T PRK10115 421 ITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLK 500 (686)
T ss_pred EECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhc
Confidence 344589998763 22 23689999999876653 3666677888899999999999976554211 11
Q ss_pred CcchHHHHHHHHHHHHHHh--CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 91 TSYTALHLVGDLIGLLDKL--GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
...+++|+++.+..+++.= ..+++.+.|.|.||+++..++..+|+.++++|...|..+.
T Consensus 501 k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~ 561 (686)
T PRK10115 501 KKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDV 561 (686)
T ss_pred CCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhH
Confidence 2345666666666665442 2358999999999999999999999999999999887664
No 108
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.49 E-value=1.9e-12 Score=97.36 Aligned_cols=88 Identities=25% Similarity=0.396 Sum_probs=67.4
Q ss_pred EEEEccCCCchhhHHH--HHHHHhhCC--ceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEech
Q 048209 46 VLFIHGFPELWYSWRN--QLLYLSSRG--YRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDW 121 (349)
Q Consensus 46 iv~~hG~~~~~~~~~~--~~~~L~~~G--~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~ 121 (349)
|+++||+.++....+. +.+.+.+.+ ..+.++|++ ....+..+.+.++++....+.+.|||.||
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~-------------~~p~~a~~~l~~~i~~~~~~~~~liGSSl 68 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP-------------PFPEEAIAQLEQLIEELKPENVVLIGSSL 68 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC-------------cCHHHHHHHHHHHHHhCCCCCeEEEEECh
Confidence 7899999988766543 445666654 456666654 24567778888999888777799999999
Q ss_pred HHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 122 GALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 122 Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
||..|..+|.+++ +++ |+++|++.+
T Consensus 69 GG~~A~~La~~~~--~~a-vLiNPav~p 93 (187)
T PF05728_consen 69 GGFYATYLAERYG--LPA-VLINPAVRP 93 (187)
T ss_pred HHHHHHHHHHHhC--CCE-EEEcCCCCH
Confidence 9999999999986 444 899987765
No 109
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.45 E-value=8.7e-13 Score=98.02 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=77.7
Q ss_pred eEEEeeCCeeEEEEeeCCCC-eEEEEccC-CCchhhHHHHHHHHhhCCceEEeeCCCCCC--CCCC-CCC-----CCcch
Q 048209 25 HTTVGTNGINMHVASIGTGP-VVLFIHGF-PELWYSWRNQLLYLSSRGYRAIAPDLRGYG--DTDA-PPS-----VTSYT 94 (349)
Q Consensus 25 ~~~~~~~g~~~~~~~~g~~~-~iv~~hG~-~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G--~s~~-~~~-----~~~~~ 94 (349)
.+..++.|.+.++....+.+ .||++--+ |.....-+..+..++..||.|+++|+. .| .|.. ... ....+
T Consensus 20 g~~~~v~gldaYv~gs~~~~~~li~i~DvfG~~~~n~r~~Adk~A~~Gy~v~vPD~~-~Gdp~~~~~~~~~~~~w~~~~~ 98 (242)
T KOG3043|consen 20 GREEEVGGLDAYVVGSTSSKKVLIVIQDVFGFQFPNTREGADKVALNGYTVLVPDFF-RGDPWSPSLQKSERPEWMKGHS 98 (242)
T ss_pred CceEeecCeeEEEecCCCCCeEEEEEEeeeccccHHHHHHHHHHhcCCcEEEcchhh-cCCCCCCCCChhhhHHHHhcCC
Confidence 45566777777666555444 56666554 444455778889999999999999986 23 1211 110 01123
Q ss_pred HHHHHHHHHHHHHHh---C-CceeEEEEechHHHHHHHHHhhCccccceeeeeccC
Q 048209 95 ALHLVGDLIGLLDKL---G-IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVP 146 (349)
Q Consensus 95 ~~~~~~~~~~~~~~~---~-~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 146 (349)
..-.-+++..+++.+ | .+++.++|.||||.++..+....| .+.+.+.+-|.
T Consensus 99 ~~~~~~~i~~v~k~lk~~g~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps 153 (242)
T KOG3043|consen 99 PPKIWKDITAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPS 153 (242)
T ss_pred cccchhHHHHHHHHHHHcCCcceeeEEEEeecceEEEEeeccch-hheeeeEecCC
Confidence 333344555555444 4 568999999999999999988887 57777766654
No 110
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=99.42 E-value=3.5e-12 Score=100.58 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=72.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHh-hCCce----EEeeCCCCC----CCCC---CCC------CCCc-chHHHHHHHHH
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLS-SRGYR----AIAPDLRGY----GDTD---APP------SVTS-YTALHLVGDLI 103 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~-~~G~~----v~~~D~~G~----G~s~---~~~------~~~~-~~~~~~~~~~~ 103 (349)
..|.||+||++++...+..++..+. +.|.. ++.++--|. |.=. ..+ +... -+....++.+.
T Consensus 11 ~tPTifihG~~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 11 TTPTIFIHGYGGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp -EEEEEE--TTGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred CCcEEEECCCCCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 4589999999999999999999997 65432 333343332 2111 111 1122 36778888888
Q ss_pred HHHHHh----CCceeEEEEechHHHHHHHHHhhCcc-----ccceeeeeccCCCCC
Q 048209 104 GLLDKL----GIHQVFLVGHDWGALIAWYFCLFRPD-----RVKALVNMSVPFPPR 150 (349)
Q Consensus 104 ~~~~~~----~~~~~~lvG~S~Gg~ia~~~a~~~p~-----~v~~lvl~~~~~~~~ 150 (349)
.++.+| +.+++.+|||||||+.++.++..+.. ++.++|.+++++...
T Consensus 91 ~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~ 146 (255)
T PF06028_consen 91 KVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGI 146 (255)
T ss_dssp HHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTT
T ss_pred HHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcc
Confidence 888887 67799999999999999999887532 589999999988754
No 111
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.41 E-value=2e-11 Score=98.19 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=89.7
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhC---CceEEeeCCCCCCCCCCCC----CCCcchHHHHHHHHHHHHHHhC-----
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSR---GYRAIAPDLRGYGDTDAPP----SVTSYTALHLVGDLIGLLDKLG----- 110 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~---G~~v~~~D~~G~G~s~~~~----~~~~~~~~~~~~~~~~~~~~~~----- 110 (349)
+..+||++|.+|-.+.|..++..|.+. .+.|+++.+.||-.++... ....++++++++--.++++++-
T Consensus 2 ~~li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~~ 81 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKNK 81 (266)
T ss_pred cEEEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhcC
Confidence 357999999999999999999988754 6999999999998777651 3467899999887777776652
Q ss_pred -CceeEEEEechHHHHHHHHHhhCc---cccceeeeeccCCCC
Q 048209 111 -IHQVFLVGHDWGALIAWYFCLFRP---DRVKALVNMSVPFPP 149 (349)
Q Consensus 111 -~~~~~lvG~S~Gg~ia~~~a~~~p---~~v~~lvl~~~~~~~ 149 (349)
..+++++|||.|+.++++.+.+.+ .+|.+++++-|....
T Consensus 82 ~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ 124 (266)
T PF10230_consen 82 PNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIED 124 (266)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcccc
Confidence 347999999999999999999999 689999999986543
No 112
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=99.39 E-value=1.4e-11 Score=106.77 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=87.4
Q ss_pred eEEEeeC----CeeEEEEeeCC------CCeEEEEccCCCchhhHHHHHH------------------HHhhCCceEEee
Q 048209 25 HTTVGTN----GINMHVASIGT------GPVVLFIHGFPELWYSWRNQLL------------------YLSSRGYRAIAP 76 (349)
Q Consensus 25 ~~~~~~~----g~~~~~~~~g~------~~~iv~~hG~~~~~~~~~~~~~------------------~L~~~G~~v~~~ 76 (349)
..+++++ +..++|+-..+ .|.||+++|.++.+..+..+.+ .+.+. ..++.+
T Consensus 49 sGy~~v~~~~~~~~lFyw~~~s~~~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~i 127 (462)
T PTZ00472 49 SGYFDIPGNQTDKHYFYWAFGPRNGNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYV 127 (462)
T ss_pred eEEEEeCCCCCCceEEEEEEEcCCCCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEE
Confidence 3455553 46777776552 6899999999998877643321 12222 679999
Q ss_pred CCC-CCCCCCCCCCCCcchHHHHHHHHHHHHHHh-------CCceeEEEEechHHHHHHHHHhhC----------ccccc
Q 048209 77 DLR-GYGDTDAPPSVTSYTALHLVGDLIGLLDKL-------GIHQVFLVGHDWGALIAWYFCLFR----------PDRVK 138 (349)
Q Consensus 77 D~~-G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lvG~S~Gg~ia~~~a~~~----------p~~v~ 138 (349)
|.| |+|.|.........+.++.++|+.++++.+ +..+++|+|||+||..+..+|.+- +-.++
T Consensus 128 DqP~G~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLk 207 (462)
T PTZ00472 128 DQPAGVGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLA 207 (462)
T ss_pred eCCCCcCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeE
Confidence 975 888887654323445678888888888754 446899999999999888777652 12478
Q ss_pred eeeeeccCCCCC
Q 048209 139 ALVNMSVPFPPR 150 (349)
Q Consensus 139 ~lvl~~~~~~~~ 150 (349)
|+++-++...+.
T Consensus 208 Gi~IGNg~~dp~ 219 (462)
T PTZ00472 208 GLAVGNGLTDPY 219 (462)
T ss_pred EEEEeccccChh
Confidence 888888876553
No 113
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.39 E-value=2.2e-12 Score=101.36 Aligned_cols=99 Identities=20% Similarity=0.191 Sum_probs=63.0
Q ss_pred EEEEccCC---CchhhHHHHHHHHhh-CCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH-----hCCceeEE
Q 048209 46 VLFIHGFP---ELWYSWRNQLLYLSS-RGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK-----LGIHQVFL 116 (349)
Q Consensus 46 iv~~hG~~---~~~~~~~~~~~~L~~-~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l 116 (349)
||++||.+ ++......++..+++ .|+.|+.+|+|=..... ..-.++|..+.+..+++. .+.+++++
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~~-----~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l 75 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEAP-----FPAALEDVKAAYRWLLKNADKLGIDPERIVL 75 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTSS-----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccccc-----ccccccccccceeeeccccccccccccceEE
Confidence 79999986 444555666777765 79999999999321111 112333444444444444 23458999
Q ss_pred EEechHHHHHHHHHhhCcc----ccceeeeeccCCCC
Q 048209 117 VGHDWGALIAWYFCLFRPD----RVKALVNMSVPFPP 149 (349)
Q Consensus 117 vG~S~Gg~ia~~~a~~~p~----~v~~lvl~~~~~~~ 149 (349)
+|+|.||.+|+.++.+..+ .++++++++|....
T Consensus 76 ~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 76 IGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp EEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred eecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 9999999999999986443 38999999996544
No 114
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.38 E-value=1.1e-11 Score=94.52 Aligned_cols=107 Identities=25% Similarity=0.338 Sum_probs=75.9
Q ss_pred CCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCC-CcchHHHHHHHHHHHHHHh-------CCc
Q 048209 41 GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSV-TSYTALHLVGDLIGLLDKL-------GIH 112 (349)
Q Consensus 41 g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~ 112 (349)
|.=|.|+|+||+......|..+..+++.+||-|+++++-..-. +... +--+....++.+..-++++ ...
T Consensus 44 G~yPVilF~HG~~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~---p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~ 120 (307)
T PF07224_consen 44 GTYPVILFLHGFNLYNSFYSQLLAHIASHGFIVVAPQLYTLFP---PDGQDEIKSAASVINWLPEGLQHVLPENVEANLS 120 (307)
T ss_pred CCccEEEEeechhhhhHHHHHHHHHHhhcCeEEEechhhcccC---CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccc
Confidence 3358999999999999999999999999999999999864211 1100 0112222333333333333 335
Q ss_pred eeEEEEechHHHHHHHHHhhCc--cccceeeeeccCCCCC
Q 048209 113 QVFLVGHDWGALIAWYFCLFRP--DRVKALVNMSVPFPPR 150 (349)
Q Consensus 113 ~~~lvG~S~Gg~ia~~~a~~~p--~~v~~lvl~~~~~~~~ 150 (349)
++.++|||.||-.|+.+|..+. -.++++|.++|.....
T Consensus 121 klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~ 160 (307)
T PF07224_consen 121 KLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTS 160 (307)
T ss_pred eEEEeecCCccHHHHHHHhcccccCchhheecccccCCCC
Confidence 8999999999999999998763 2589999999876543
No 115
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.36 E-value=5.5e-11 Score=118.06 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=87.7
Q ss_pred eCCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCC-ceeEEEE
Q 048209 40 IGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGI-HQVFLVG 118 (349)
Q Consensus 40 ~g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lvG 118 (349)
.+++++++++||++++...|..+++.|... +.|+.+|.+|+|.+.. ..++++++++++.+.++.+.. .+++++|
T Consensus 1065 ~~~~~~l~~lh~~~g~~~~~~~l~~~l~~~-~~v~~~~~~g~~~~~~----~~~~l~~la~~~~~~i~~~~~~~p~~l~G 1139 (1296)
T PRK10252 1065 EGDGPTLFCFHPASGFAWQFSVLSRYLDPQ-WSIYGIQSPRPDGPMQ----TATSLDEVCEAHLATLLEQQPHGPYHLLG 1139 (1296)
T ss_pred cCCCCCeEEecCCCCchHHHHHHHHhcCCC-CcEEEEECCCCCCCCC----CCCCHHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 355789999999999999999999999774 9999999999986532 357899999999999987653 4899999
Q ss_pred echHHHHHHHHHhh---CccccceeeeeccC
Q 048209 119 HDWGALIAWYFCLF---RPDRVKALVNMSVP 146 (349)
Q Consensus 119 ~S~Gg~ia~~~a~~---~p~~v~~lvl~~~~ 146 (349)
|||||.+|.++|.+ .++++..++++++.
T Consensus 1140 ~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~~ 1170 (1296)
T PRK10252 1140 YSLGGTLAQGIAARLRARGEEVAFLGLLDTW 1170 (1296)
T ss_pred echhhHHHHHHHHHHHHcCCceeEEEEecCC
Confidence 99999999999986 57789999998864
No 116
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=99.36 E-value=1.9e-10 Score=92.88 Aligned_cols=240 Identities=17% Similarity=0.153 Sum_probs=133.4
Q ss_pred CCeEEEEccCCCchhhHH-HH-HHHHhhCCceEEeeCCCCCCCCCCCCCC--CcchHHHH----------HHHHHHHHHH
Q 048209 43 GPVVLFIHGFPELWYSWR-NQ-LLYLSSRGYRAIAPDLRGYGDTDAPPSV--TSYTALHL----------VGDLIGLLDK 108 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~-~~-~~~L~~~G~~v~~~D~~G~G~s~~~~~~--~~~~~~~~----------~~~~~~~~~~ 108 (349)
+|.+|.++|.|.+....+ .+ +..|.++|+..+.+..|-||.-.+.... ...+..|+ +..+..+++.
T Consensus 92 rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~ 171 (348)
T PF09752_consen 92 RPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWLER 171 (348)
T ss_pred CceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHHh
Confidence 688888899888554332 23 6788888999999999999876543310 11122221 1233444555
Q ss_pred hCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCCCCCccccchhhcccchhhhhccCCccHHHHHhccch
Q 048209 109 LGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDT 188 (349)
Q Consensus 109 ~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (349)
.|..++.+.|.||||.+|...|...|..+..+-++++......-....+... ...
T Consensus 172 ~G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~-------------------------i~W 226 (348)
T PF09752_consen 172 EGYGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNS-------------------------INW 226 (348)
T ss_pred cCCCceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcC-------------------------CCH
Confidence 5888999999999999999999999987776666665443211100000000 000
Q ss_pred HHHHHHHhhhh-ccCC-CCCccCcCCCCCCCCCCCCCCCChhhHHHHHHhccCCCCCCCcccccccccCCCCchhHHHHH
Q 048209 189 ARLMKKFLCLR-IAKP-LCIPKDTGLSTVPDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCSDLYVPKTYTMAIII 266 (349)
Q Consensus 189 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (349)
..+-+. +... +... ......... ...........+.+.+......+.... .
T Consensus 227 ~~L~~q-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Ea~~~m~~~md~~T--~---------------------- 279 (348)
T PF09752_consen 227 DALEKQ-FEDTVYEEEISDIPAQNKS--LPLDSMEERRRDREALRFMRGVMDSFT--H---------------------- 279 (348)
T ss_pred HHHHHH-hcccchhhhhcccccCccc--ccchhhccccchHHHHHHHHHHHHhhc--c----------------------
Confidence 000000 0000 0000 000000000 000001111222333332222111100 0
Q ss_pred HhhhhhccCCCCcccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcc-cchhcHHHHHHHHHHH
Q 048209 267 KENWELMAPWTGVQIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHF-INQEKAEEVGAHIYEF 345 (349)
Q Consensus 267 ~~~~~~~~~~~l~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~-~~~e~~~~~~~~i~~f 345 (349)
..+...+ .-.-.++++.+++|.++|...... +.+..|++ ++..+++ ||. .++-+.+.|.+.|.+-
T Consensus 280 --l~nf~~P----~dp~~ii~V~A~~DaYVPr~~v~~------Lq~~WPGs-EvR~l~g-GHVsA~L~~q~~fR~AI~Da 345 (348)
T PF09752_consen 280 --LTNFPVP----VDPSAIIFVAAKNDAYVPRHGVLS------LQEIWPGS-EVRYLPG-GHVSAYLLHQEAFRQAIYDA 345 (348)
T ss_pred --ccccCCC----CCCCcEEEEEecCceEechhhcch------HHHhCCCC-eEEEecC-CcEEEeeechHHHHHHHHHH
Confidence 0111111 224568899999999999887765 88999999 9999987 997 4677889999999887
Q ss_pred HHh
Q 048209 346 IKK 348 (349)
Q Consensus 346 l~~ 348 (349)
+++
T Consensus 346 f~R 348 (348)
T PF09752_consen 346 FER 348 (348)
T ss_pred hhC
Confidence 754
No 117
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.36 E-value=5.6e-12 Score=106.17 Aligned_cols=105 Identities=24% Similarity=0.214 Sum_probs=60.5
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCC-C-C--CC-------------C-----CCc----ch--
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDT-D-A--PP-------------S-----VTS----YT-- 94 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s-~-~--~~-------------~-----~~~----~~-- 94 (349)
-|+|||-||++++...|..++..|+++||-|+++|+|..-.+ . . .. . ... ..
T Consensus 100 ~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (379)
T PF03403_consen 100 FPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPEEEFE 179 (379)
T ss_dssp EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GGGHHH
T ss_pred CCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccchhHHH
Confidence 489999999999999999999999999999999999942111 0 0 00 0 000 00
Q ss_pred -----HHHHHHHHHHHHHHh--------------------------CCceeEEEEechHHHHHHHHHhhCccccceeeee
Q 048209 95 -----ALHLVGDLIGLLDKL--------------------------GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNM 143 (349)
Q Consensus 95 -----~~~~~~~~~~~~~~~--------------------------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~ 143 (349)
++.-++++..+++.+ +..++.++|||+||..++..+... .++++.|++
T Consensus 180 ~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~~I~L 258 (379)
T PF03403_consen 180 LRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKAGILL 258 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcceEEEe
Confidence 111223333343332 123799999999999999888876 579999999
Q ss_pred ccCCC
Q 048209 144 SVPFP 148 (349)
Q Consensus 144 ~~~~~ 148 (349)
++...
T Consensus 259 D~W~~ 263 (379)
T PF03403_consen 259 DPWMF 263 (379)
T ss_dssp S---T
T ss_pred CCccc
Confidence 98653
No 118
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=99.33 E-value=1.7e-11 Score=95.92 Aligned_cols=107 Identities=23% Similarity=0.260 Sum_probs=72.7
Q ss_pred CCCeEEEEccCCCchhhHHHHHHHHhh--------CCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh----
Q 048209 42 TGPVVLFIHGFPELWYSWRNQLLYLSS--------RGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL---- 109 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~~~~~~~L~~--------~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~---- 109 (349)
++.+||||||.+++...++.+...+.+ ..++++++|+......-.... -....+...+.+..+++..
T Consensus 3 ~g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~-l~~q~~~~~~~i~~i~~~~~~~~ 81 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRT-LQRQAEFLAEAIKYILELYKSNR 81 (225)
T ss_pred CCCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCcccccccccc-HHHHHHHHHHHHHHHHHhhhhcc
Confidence 468999999999999988888766632 247899999875432211110 0011222333444444444
Q ss_pred -CCceeEEEEechHHHHHHHHHhhCc---cccceeeeeccCCCC
Q 048209 110 -GIHQVFLVGHDWGALIAWYFCLFRP---DRVKALVNMSVPFPP 149 (349)
Q Consensus 110 -~~~~~~lvG~S~Gg~ia~~~a~~~p---~~v~~lvl~~~~~~~ 149 (349)
+.+++++|||||||.+|..++...+ +.|+.+|.+++|...
T Consensus 82 ~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~g 125 (225)
T PF07819_consen 82 PPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHRG 125 (225)
T ss_pred CCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCCC
Confidence 4568999999999999988877543 479999999987654
No 119
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.31 E-value=6e-11 Score=108.75 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=66.9
Q ss_pred HHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhC--------------------CceeEEEEec
Q 048209 61 NQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLG--------------------IHQVFLVGHD 120 (349)
Q Consensus 61 ~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~lvG~S 120 (349)
.+.+.|.++||.|+.+|.||.|.|++... .+. .+..+|..++++.+. ..+|.++|.|
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~--~~~-~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~S 346 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPT--TGD-YQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKS 346 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcCc--cCC-HHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEc
Confidence 34578888999999999999999998652 222 334556666666653 3599999999
Q ss_pred hHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 121 WGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 121 ~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
+||.+++.+|...|..++++|..++...
T Consensus 347 Y~G~~~~~aAa~~pp~LkAIVp~a~is~ 374 (767)
T PRK05371 347 YLGTLPNAVATTGVEGLETIIPEAAISS 374 (767)
T ss_pred HHHHHHHHHHhhCCCcceEEEeeCCCCc
Confidence 9999999999998888999999887643
No 120
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=99.31 E-value=7.1e-11 Score=84.80 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=67.1
Q ss_pred CeEEEEccCCCch-hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechH
Q 048209 44 PVVLFIHGFPELW-YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWG 122 (349)
Q Consensus 44 ~~iv~~hG~~~~~-~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~G 122 (349)
+.+|+|||+.++. ..|+...+.=. -.+-.+++. +...-..+++++.+...+... .++++||+||+|
T Consensus 3 ~~~lIVpG~~~Sg~~HWq~~we~~l---~~a~rveq~---------~w~~P~~~dWi~~l~~~v~a~-~~~~vlVAHSLG 69 (181)
T COG3545 3 TDVLIVPGYGGSGPNHWQSRWESAL---PNARRVEQD---------DWEAPVLDDWIARLEKEVNAA-EGPVVLVAHSLG 69 (181)
T ss_pred ceEEEecCCCCCChhHHHHHHHhhC---ccchhcccC---------CCCCCCHHHHHHHHHHHHhcc-CCCeEEEEeccc
Confidence 5689999998765 45766543211 123333332 113446888999998888877 356999999999
Q ss_pred HHHHHHHHhhCccccceeeeeccCCC
Q 048209 123 ALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 123 g~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
+..++.++......|+|+.+++|+-.
T Consensus 70 c~~v~h~~~~~~~~V~GalLVAppd~ 95 (181)
T COG3545 70 CATVAHWAEHIQRQVAGALLVAPPDV 95 (181)
T ss_pred HHHHHHHHHhhhhccceEEEecCCCc
Confidence 99999999987778999999998654
No 121
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.30 E-value=6.1e-11 Score=96.64 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=78.1
Q ss_pred CCeeEEEEeeCC-------CCeEEEEccCCCch-hhHHHH---------HHHHhhCCceEEeeCCCCCCCCCCCCCCCcc
Q 048209 31 NGINMHVASIGT-------GPVVLFIHGFPELW-YSWRNQ---------LLYLSSRGYRAIAPDLRGYGDTDAPPSVTSY 93 (349)
Q Consensus 31 ~g~~~~~~~~g~-------~~~iv~~hG~~~~~-~~~~~~---------~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~ 93 (349)
||.+|....+-+ -|+||..|+++.+. ...... ...+.++||.|+..|.||.|.|+......
T Consensus 1 DGv~L~adv~~P~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~-- 78 (272)
T PF02129_consen 1 DGVRLAADVYRPGADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM-- 78 (272)
T ss_dssp TS-EEEEEEEEE--TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT--
T ss_pred CCCEEEEEEEecCCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC--
Confidence 566665443321 37899999998653 111111 12388999999999999999999876422
Q ss_pred hHHHHHHHHHHHHHHh---CC--ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCC
Q 048209 94 TALHLVGDLIGLLDKL---GI--HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRN 151 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~~---~~--~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 151 (349)
....++|..++++.+ .. .+|.++|.|++|..++.+|+..|..+++++...+..+...
T Consensus 79 -~~~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~ 140 (272)
T PF02129_consen 79 -SPNEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYR 140 (272)
T ss_dssp -SHHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCC
T ss_pred -ChhHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccc
Confidence 344555655555555 22 2899999999999999999988888999999988766544
No 122
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=99.28 E-value=1.5e-10 Score=85.30 Aligned_cols=96 Identities=21% Similarity=0.224 Sum_probs=74.4
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh----CCceeEEEEec
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL----GIHQVFLVGHD 120 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvG~S 120 (349)
.+||+-|=++-...=..+++.|+++|+.|+.+|-+-+=.+.+ +.++.+.|+..++++. +.++++|+|+|
T Consensus 4 ~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~r-------tP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYS 76 (192)
T PF06057_consen 4 LAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFWSER-------TPEQTAADLARIIRHYRARWGRKRVVLIGYS 76 (192)
T ss_pred EEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHhhhC-------CHHHHHHHHHHHHHHHHHHhCCceEEEEeec
Confidence 577888877776666778899999999999999764444433 4566777777766654 77899999999
Q ss_pred hHHHHHHHHHhhCcc----ccceeeeeccCC
Q 048209 121 WGALIAWYFCLFRPD----RVKALVNMSVPF 147 (349)
Q Consensus 121 ~Gg~ia~~~a~~~p~----~v~~lvl~~~~~ 147 (349)
+|+-+.-....+-|. +|+.++|+++..
T Consensus 77 FGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~ 107 (192)
T PF06057_consen 77 FGADVLPFIYNRLPAALRARVAQVVLLSPST 107 (192)
T ss_pred CCchhHHHHHhhCCHHHHhheeEEEEeccCC
Confidence 999887777776664 689999999754
No 123
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.7e-10 Score=103.36 Aligned_cols=129 Identities=18% Similarity=0.223 Sum_probs=93.4
Q ss_pred hhcccceEEEeeCCeeEEEEeeCC--------CCeEEEEccCCCchhh-------HHHHHHHHhhCCceEEeeCCCCCCC
Q 048209 19 TMEKIEHTTVGTNGINMHVASIGT--------GPVVLFIHGFPELWYS-------WRNQLLYLSSRGYRAIAPDLRGYGD 83 (349)
Q Consensus 19 ~~~~~~~~~~~~~g~~~~~~~~g~--------~~~iv~~hG~~~~~~~-------~~~~~~~L~~~G~~v~~~D~~G~G~ 83 (349)
.++..+...+..+|...++...-+ -|.+|.+||.+++... |... .....|+.|+.+|.||.|.
T Consensus 494 ~~p~~~~~~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~--~~s~~g~~v~~vd~RGs~~ 571 (755)
T KOG2100|consen 494 ALPIVEFGKIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEV--VVSSRGFAVLQVDGRGSGG 571 (755)
T ss_pred cCCcceeEEEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHH--hhccCCeEEEEEcCCCcCC
Confidence 356677788888999998886654 2788899999873222 3322 4556799999999999887
Q ss_pred CCCCC------CCCcchHHHHHHHHHHHHHHh--CCceeEEEEechHHHHHHHHHhhCccc-cceeeeeccCCCC
Q 048209 84 TDAPP------SVTSYTALHLVGDLIGLLDKL--GIHQVFLVGHDWGALIAWYFCLFRPDR-VKALVNMSVPFPP 149 (349)
Q Consensus 84 s~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~~ 149 (349)
....- ........|+...+..+++.. +.+++.+.|+|.||.+++.++...|+. ++..+.++|....
T Consensus 572 ~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~ 646 (755)
T KOG2100|consen 572 YGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDW 646 (755)
T ss_pred cchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeee
Confidence 65431 122345666666666666554 445899999999999999999999854 5555999987654
No 124
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=99.25 E-value=6.5e-11 Score=100.99 Aligned_cols=126 Identities=19% Similarity=0.247 Sum_probs=87.9
Q ss_pred cceEEEee-CCeeEEEEe--eCCCCeEEEEccC---CCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHH
Q 048209 23 IEHTTVGT-NGINMHVAS--IGTGPVVLFIHGF---PELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTAL 96 (349)
Q Consensus 23 ~~~~~~~~-~g~~~~~~~--~g~~~~iv~~hG~---~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~ 96 (349)
.+..+... +|..+++-. .|....-.+-+.. ......|..+++.|.+.||.+ ..|++|+|.+.+.........+
T Consensus 68 ~t~~~~~~~~gv~i~vp~~~~g~~~i~~ldp~~~~~~~~~~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~~~~~~~~ 146 (440)
T PLN02733 68 KTGKTVSLDPKTEIVVPDDRYGLYAIDILDPDVIIRLDEVYYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSNRLPETMD 146 (440)
T ss_pred ccCceecCCCCceEEcCCCCCCceeeEEecCccccCcchHHHHHHHHHHHHHcCCcc-CCCcccCCCCccccccHHHHHH
Confidence 34455566 588877664 2321111111221 345688999999999999765 8999999998775421122345
Q ss_pred HHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccc----cceeeeeccCCCC
Q 048209 97 HLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDR----VKALVNMSVPFPP 149 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~----v~~lvl~~~~~~~ 149 (349)
++.+.++++.+..+.++++|+||||||.+++.++..+|+. |+++|+++++...
T Consensus 147 ~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~p~~~~k~I~~~I~la~P~~G 203 (440)
T PLN02733 147 GLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSLHSDVFEKYVNSWIAIAAPFQG 203 (440)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHCCHhHHhHhccEEEECCCCCC
Confidence 5555566666666778999999999999999999988864 7899999987654
No 125
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.24 E-value=1.9e-11 Score=95.08 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhC---CceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 98 LVGDLIGLLDKLG---IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 98 ~~~~~~~~~~~~~---~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
+.+...+++.... .++|.|+|.|.||-+|+.+|..+| .|+++|.++++...
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~ 58 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVV 58 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB-
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeE
Confidence 3344445554442 258999999999999999999999 79999999987654
No 126
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.24 E-value=2e-09 Score=88.32 Aligned_cols=105 Identities=17% Similarity=0.102 Sum_probs=75.9
Q ss_pred CCeEEEEccCCC-----chhhHHHHHHHHhh-CCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH------hC
Q 048209 43 GPVVLFIHGFPE-----LWYSWRNQLLYLSS-RGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK------LG 110 (349)
Q Consensus 43 ~~~iv~~hG~~~-----~~~~~~~~~~~L~~-~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~------~~ 110 (349)
.|.||++||.|. ....|..++..+++ .+..|+.+|+|=--+.. ..-.++|-.+.+.-+.++ .+
T Consensus 90 ~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~-----~Pa~y~D~~~Al~w~~~~~~~~~~~D 164 (336)
T KOG1515|consen 90 LPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHP-----FPAAYDDGWAALKWVLKNSWLKLGAD 164 (336)
T ss_pred ceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCC-----CCccchHHHHHHHHHHHhHHHHhCCC
Confidence 479999999872 35668888888854 47889999999322222 223455666666666553 24
Q ss_pred CceeEEEEechHHHHHHHHHhhC------ccccceeeeeccCCCCCCC
Q 048209 111 IHQVFLVGHDWGALIAWYFCLFR------PDRVKALVNMSVPFPPRNP 152 (349)
Q Consensus 111 ~~~~~lvG~S~Gg~ia~~~a~~~------p~~v~~lvl~~~~~~~~~~ 152 (349)
.+++.|+|-|.||.+|..+|.+. +-++++.|++-|.+.....
T Consensus 165 ~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~ 212 (336)
T KOG1515|consen 165 PSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDR 212 (336)
T ss_pred cccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCC
Confidence 56899999999999999887752 3479999999998766544
No 127
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=99.22 E-value=7.5e-11 Score=91.98 Aligned_cols=104 Identities=18% Similarity=0.081 Sum_probs=53.8
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHh----hCCceEEeeCCCC-----CCCCCC------------CC------C---CCc
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLS----SRGYRAIAPDLRG-----YGDTDA------------PP------S---VTS 92 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~----~~G~~v~~~D~~G-----~G~s~~------------~~------~---~~~ 92 (349)
++-||++||++.++..++.....|. +.++..+.+|-|- -|-... +. . ...
T Consensus 4 k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 83 (212)
T PF03959_consen 4 KPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHEY 83 (212)
T ss_dssp --EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGGG
T ss_pred CceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCcccc
Confidence 5789999999999999877665444 4258888887541 111100 00 0 012
Q ss_pred chHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCc--------cccceeeeeccCC
Q 048209 93 YTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRP--------DRVKALVNMSVPF 147 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p--------~~v~~lvl~~~~~ 147 (349)
..+++..+.+.+.++..|. -..++|+|+||.+|..++.... -.++-+|++++..
T Consensus 84 ~~~~~sl~~l~~~i~~~GP-fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~ 145 (212)
T PF03959_consen 84 EGLDESLDYLRDYIEENGP-FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFP 145 (212)
T ss_dssp ---HHHHHHHHHHHHHH----SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES---
T ss_pred cCHHHHHHHHHHHHHhcCC-eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccC
Confidence 2355566666777766652 3569999999999998886421 2367788887654
No 128
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=99.20 E-value=7.3e-11 Score=95.56 Aligned_cols=93 Identities=26% Similarity=0.263 Sum_probs=67.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCC--CCCCCCCCC----CcchHHHHHHHHHHHHHHh-------
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGY--GDTDAPPSV----TSYTALHLVGDLIGLLDKL------- 109 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~--G~s~~~~~~----~~~~~~~~~~~~~~~~~~~------- 109 (349)
-|.||+-||.|.....+..+++.|++.||.|..+|++|. |........ ...-+.+...|+..+++.+
T Consensus 71 ~PlvvlshG~Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP 150 (365)
T COG4188 71 LPLVVLSHGSGSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASP 150 (365)
T ss_pred CCeEEecCCCCCCccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCc
Confidence 489999999999999999999999999999999999984 333322211 1112233444444444433
Q ss_pred ------CCceeEEEEechHHHHHHHHHhhCcc
Q 048209 110 ------GIHQVFLVGHDWGALIAWYFCLFRPD 135 (349)
Q Consensus 110 ------~~~~~~lvG~S~Gg~ia~~~a~~~p~ 135 (349)
...+|.++|||+||..++..+....+
T Consensus 151 ~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 151 ALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred ccccccCccceEEEecccccHHHHHhcccccc
Confidence 23489999999999999998876543
No 129
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.18 E-value=4.8e-09 Score=87.54 Aligned_cols=103 Identities=19% Similarity=0.155 Sum_probs=69.3
Q ss_pred CCeEEEEccCC---CchhhHHHHH-HHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH---hC--Cce
Q 048209 43 GPVVLFIHGFP---ELWYSWRNQL-LYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK---LG--IHQ 113 (349)
Q Consensus 43 ~~~iv~~hG~~---~~~~~~~~~~-~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~ 113 (349)
.|+||++||.+ ++.......+ ..+...|+.|+.+|+|-.-+-. ....+++..+.+..+.++ ++ .++
T Consensus 79 ~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~-----~p~~~~d~~~a~~~l~~~~~~~g~dp~~ 153 (312)
T COG0657 79 APVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHP-----FPAALEDAYAAYRWLRANAAELGIDPSR 153 (312)
T ss_pred CcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCC-----CCchHHHHHHHHHHHHhhhHhhCCCccc
Confidence 68999999986 4455554444 4555679999999999433221 122344443344344333 23 458
Q ss_pred eEEEEechHHHHHHHHHhhCcc----ccceeeeeccCCCCC
Q 048209 114 VFLVGHDWGALIAWYFCLFRPD----RVKALVNMSVPFPPR 150 (349)
Q Consensus 114 ~~lvG~S~Gg~ia~~~a~~~p~----~v~~lvl~~~~~~~~ 150 (349)
+.++|+|-||.+++.++..-.+ .....+++.|.....
T Consensus 154 i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~ 194 (312)
T COG0657 154 IAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLT 194 (312)
T ss_pred eEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCc
Confidence 9999999999999998876443 468889998876654
No 130
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.17 E-value=1.7e-10 Score=84.56 Aligned_cols=112 Identities=18% Similarity=0.112 Sum_probs=72.4
Q ss_pred eEEEEeeCC---CCeEEEEccCC---CchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048209 34 NMHVASIGT---GPVVLFIHGFP---ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLD 107 (349)
Q Consensus 34 ~~~~~~~g~---~~~iv~~hG~~---~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~ 107 (349)
....-.+|+ .+..||+||.- ++....-.++..+.+.||+|..+++ +.+..... -..+..+...-+.-+++
T Consensus 55 ~q~VDIwg~~~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY---~l~~q~ht-L~qt~~~~~~gv~filk 130 (270)
T KOG4627|consen 55 RQLVDIWGSTNQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGY---NLCPQVHT-LEQTMTQFTHGVNFILK 130 (270)
T ss_pred ceEEEEecCCCCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEecc---CcCccccc-HHHHHHHHHHHHHHHHH
Confidence 444556664 68999999963 3444444566677778999999874 44432210 11233444444455555
Q ss_pred HhCC-ceeEEEEechHHHHHHHHHhh-CccccceeeeeccCCCC
Q 048209 108 KLGI-HQVFLVGHDWGALIAWYFCLF-RPDRVKALVNMSVPFPP 149 (349)
Q Consensus 108 ~~~~-~~~~lvG~S~Gg~ia~~~a~~-~p~~v~~lvl~~~~~~~ 149 (349)
.... +.+.+-|||.|+.+|+.+..| +.-+|.+++++++.+..
T Consensus 131 ~~~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l 174 (270)
T KOG4627|consen 131 YTENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDL 174 (270)
T ss_pred hcccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhH
Confidence 5543 456667899999999988776 33479999999987653
No 131
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=99.17 E-value=1.9e-09 Score=80.53 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=44.1
Q ss_pred ccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHH
Q 048209 280 QIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIK 347 (349)
Q Consensus 280 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~ 347 (349)
.+++|.|.|.|+.|.++|.+.+.. +.+.+++. .+..-|| ||++...+ .+.+.|.+||.
T Consensus 161 ~i~~PSLHi~G~~D~iv~~~~s~~------L~~~~~~a-~vl~Hpg-gH~VP~~~--~~~~~i~~fi~ 218 (230)
T KOG2551|consen 161 PLSTPSLHIFGETDTIVPSERSEQ------LAESFKDA-TVLEHPG-GHIVPNKA--KYKEKIADFIQ 218 (230)
T ss_pred CCCCCeeEEecccceeecchHHHH------HHHhcCCC-eEEecCC-CccCCCch--HHHHHHHHHHH
Confidence 789999999999999999988766 77888887 6666665 99977554 44444444443
No 132
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=99.16 E-value=7.6e-11 Score=90.71 Aligned_cols=89 Identities=24% Similarity=0.332 Sum_probs=56.7
Q ss_pred CeEEEEccCCC-chhhHHHHHHHHhhCCce---EEeeCCCCCCCCCCCC--CCCcchHHHHHHHHHHHHHHhCCceeEEE
Q 048209 44 PVVLFIHGFPE-LWYSWRNQLLYLSSRGYR---AIAPDLRGYGDTDAPP--SVTSYTALHLVGDLIGLLDKLGIHQVFLV 117 (349)
Q Consensus 44 ~~iv~~hG~~~-~~~~~~~~~~~L~~~G~~---v~~~D~~G~G~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 117 (349)
.||||+||.++ ....|..+.+.|.++||. |+++++-....+.... .....+..++.+-+..++++.|. +|.+|
T Consensus 2 ~PVVlVHG~~~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~TGa-kVDIV 80 (219)
T PF01674_consen 2 RPVVLVHGTGGNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGSPSVQNAHMSCESAKQLRAFIDAVLAYTGA-KVDIV 80 (219)
T ss_dssp --EEEE--TTTTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHHT---EEEE
T ss_pred CCEEEECCCCcchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCCCcccccccchhhHHHHHHHHHHHHHhhCC-EEEEE
Confidence 58999999998 667899999999999999 8999985433321110 00111234566667777777798 99999
Q ss_pred EechHHHHHHHHHhhC
Q 048209 118 GHDWGALIAWYFCLFR 133 (349)
Q Consensus 118 G~S~Gg~ia~~~a~~~ 133 (349)
||||||+++..+....
T Consensus 81 gHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 81 GHSMGGTIARYYIKGG 96 (219)
T ss_dssp EETCHHHHHHHHHHHC
T ss_pred EcCCcCHHHHHHHHHc
Confidence 9999999998887644
No 133
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.15 E-value=1.8e-09 Score=83.32 Aligned_cols=106 Identities=14% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCeEEEEccCCCchhhHHHH--HHHHhh-CCceEEeeCCCCCCCCCC------CCCC-CcchHHHHHHHHHHHHHHhC--
Q 048209 43 GPVVLFIHGFPELWYSWRNQ--LLYLSS-RGYRAIAPDLRGYGDTDA------PPSV-TSYTALHLVGDLIGLLDKLG-- 110 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~--~~~L~~-~G~~v~~~D~~G~G~s~~------~~~~-~~~~~~~~~~~~~~~~~~~~-- 110 (349)
.|.||++||.+.+...+... ...|++ .||-|+.++......... .... ..-+...++..+..+....+
T Consensus 16 ~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD 95 (220)
T PF10503_consen 16 VPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARYNID 95 (220)
T ss_pred CCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhcccC
Confidence 58999999999998876543 234554 489999988542111100 0000 00112222223333344443
Q ss_pred CceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 111 IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 111 ~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
..+|++.|+|.||+++..++..+|+.+.++..+++...
T Consensus 96 ~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~ 133 (220)
T PF10503_consen 96 PSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPY 133 (220)
T ss_pred CCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccc
Confidence 34899999999999999999999999999988887543
No 134
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.12 E-value=1e-09 Score=89.74 Aligned_cols=102 Identities=27% Similarity=0.391 Sum_probs=60.3
Q ss_pred CCeEEEEccCCCchhhH------------------HHHHHHHhhCCceEEeeCCCCCCCCCCCCCC---CcchHHHH---
Q 048209 43 GPVVLFIHGFPELWYSW------------------RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSV---TSYTALHL--- 98 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~------------------~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~---~~~~~~~~--- 98 (349)
.|.||++||-++..+.. ..+...|+++||.|+++|.+|+|+....... ..++.+.+
T Consensus 115 ~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~ 194 (390)
T PF12715_consen 115 FPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFGERGDMEGAAQGSNYDCQALARN 194 (390)
T ss_dssp EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHH
T ss_pred CCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccccccccccccccccccchhHHHHHHH
Confidence 47999999976554321 1246789999999999999999987543311 11121111
Q ss_pred ------------HHHHHHHHHHh------CCceeEEEEechHHHHHHHHHhhCccccceeeeecc
Q 048209 99 ------------VGDLIGLLDKL------GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145 (349)
Q Consensus 99 ------------~~~~~~~~~~~------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 145 (349)
+-|....++.+ ..++|.++|+||||..++.+|+..+ +|++.|..+-
T Consensus 195 ~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDd-RIka~v~~~~ 258 (390)
T PF12715_consen 195 LLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDD-RIKATVANGY 258 (390)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-T-T--EEEEES-
T ss_pred HHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcch-hhHhHhhhhh
Confidence 12223344444 2348999999999999999999874 7888876654
No 135
>PRK04940 hypothetical protein; Provisional
Probab=99.11 E-value=2.9e-09 Score=78.41 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=53.1
Q ss_pred EEEEccCCCchhh--HHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh-C---CceeEEEEe
Q 048209 46 VLFIHGFPELWYS--WRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL-G---IHQVFLVGH 119 (349)
Q Consensus 46 iv~~hG~~~~~~~--~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~lvG~ 119 (349)
|+++||+.+++.. .+.. .+. .+.+|.+-+-.+ .....+.++.+.+.+..+ . .+++.|||.
T Consensus 2 IlYlHGF~SS~~S~~~Ka~--~l~-----~~~p~~~~~~l~-------~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGS 67 (180)
T PRK04940 2 IIYLHGFDSTSPGNHEKVL--QLQ-----FIDPDVRLISYS-------TLHPKHDMQHLLKEVDKMLQLSDDERPLICGV 67 (180)
T ss_pred EEEeCCCCCCCCccHHHHH--hhe-----eeCCCCeEEECC-------CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEe
Confidence 7899999988766 3221 221 112222211001 123344444555555432 1 157999999
Q ss_pred chHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 120 DWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 120 S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
|+||..|..+|.++. -..|+++|.+.+
T Consensus 68 SLGGyyA~~La~~~g---~~aVLiNPAv~P 94 (180)
T PRK04940 68 GLGGYWAERIGFLCG---IRQVIFNPNLFP 94 (180)
T ss_pred ChHHHHHHHHHHHHC---CCEEEECCCCCh
Confidence 999999999999986 467889998765
No 136
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=99.10 E-value=9.6e-09 Score=86.52 Aligned_cols=228 Identities=13% Similarity=0.098 Sum_probs=125.4
Q ss_pred hhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh-----CCceeEEEEechHHHHHHHHHhhCccccceee
Q 048209 67 SSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL-----GIHQVFLVGHDWGALIAWYFCLFRPDRVKALV 141 (349)
Q Consensus 67 ~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lv 141 (349)
.+.|+.|+.+.+. +......++++.......+++.+ +..+++|+|.|.||+.++.+|+.+|+.+.-+|
T Consensus 97 L~~GHPvYFV~F~-------p~P~pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplv 169 (581)
T PF11339_consen 97 LRAGHPVYFVGFF-------PEPEPGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLV 169 (581)
T ss_pred HHcCCCeEEEEec-------CCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCcee
Confidence 3459999988775 11113457888777777776665 23489999999999999999999999999998
Q ss_pred eeccCCCCCC--CCCCccccchhhcccchhhhhccC-------CccHHHHHhccchH-HHHHHHhhhhcc-CCCCCccCc
Q 048209 142 NMSVPFPPRN--PAVRPLNNFRAVYGDDYYICRFQE-------PGEIEEEFAQIDTA-RLMKKFLCLRIA-KPLCIPKDT 210 (349)
Q Consensus 142 l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~ 210 (349)
+-+++..... ....++......++..|+...... ...+...+..+++. .+..+.+..... .........
T Consensus 170 laGaPlsywaG~~g~nPmRy~ggl~ggsw~~~l~sDlG~G~fdGa~lv~nFe~lnPa~~~w~K~y~Ly~~iD~e~~Rfl~ 249 (581)
T PF11339_consen 170 LAGAPLSYWAGERGDNPMRYMGGLLGGSWLTALVSDLGNGRFDGAWLVQNFENLNPANTYWSKYYDLYANIDTERERFLE 249 (581)
T ss_pred ecCCCcccccCCCCCCcHHHhcCCCcchHHHHHHHHcCCCccCcHHHHhhhhccChhHHHHHHHHHHHhccCCchhhhhH
Confidence 8888765433 122334444444444444332210 01123334444443 234443332211 111111111
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHhcc-CCCCCCCcccccccccCCCCchhHHHHHHhhhhhccCCCCcccCCcEEEEE
Q 048209 211 GLSTVPDPSALPSWLSEEDVNYYASKFN-QKGFTGPVNYYRCSDLYVPKTYTMAIIIKENWELMAPWTGVQIEVPVKFIV 289 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~ 289 (349)
+.+++.... .++.++.....+.+- ...+....... ..-...+|++|++|+.++.
T Consensus 250 FErWwgg~~----~l~~~ei~~Iv~nLFvgNrL~~g~~~~---------------------~~G~~~DLr~Ir~Piivfa 304 (581)
T PF11339_consen 250 FERWWGGFY----DLNGEEILWIVENLFVGNRLAKGEFRV---------------------SDGRRVDLRNIRSPIIVFA 304 (581)
T ss_pred HHHHhCCcc----CCCHHHHHHHHHHHhccchhccCceec---------------------cCCcEeehhhCCCCEEEEe
Confidence 444444332 244455555554432 22211111000 0001224559999999999
Q ss_pred ecCCccccCCcchhhhcccccccccCCce------e---EEEecCCCcccc
Q 048209 290 GDQDLVYNNKGMKEYIHDGGFKKYVPYLQ------E---VVVMEGVAHFIN 331 (349)
Q Consensus 290 G~~D~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~gH~~~ 331 (349)
|..|.++||+++..|+ ...+++.. + +.+-+..||+..
T Consensus 305 s~gDnITPP~QaL~WI-----~dlY~~~~ei~a~gQ~IVY~~h~~vGHLGI 350 (581)
T PF11339_consen 305 SYGDNITPPQQALNWI-----PDLYPDTEEIKAAGQTIVYLLHESVGHLGI 350 (581)
T ss_pred ccCCCCCChhHhccch-----HhhcCCHHHHHhCCCEEEEEecCCCCceEE
Confidence 9999999999886553 33333320 2 234467899754
No 137
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.5e-09 Score=90.15 Aligned_cols=117 Identities=19% Similarity=0.201 Sum_probs=85.2
Q ss_pred CCeeEEEEeeCC--------CCeEEEEccCCCchhh---HHH--HH--HHHhhCCceEEeeCCCCCCCCCCCC------C
Q 048209 31 NGINMHVASIGT--------GPVVLFIHGFPELWYS---WRN--QL--LYLSSRGYRAIAPDLRGYGDTDAPP------S 89 (349)
Q Consensus 31 ~g~~~~~~~~g~--------~~~iv~~hG~~~~~~~---~~~--~~--~~L~~~G~~v~~~D~~G~G~s~~~~------~ 89 (349)
.|..++-....+ -|+++++-|.++-.-. |.. .+ ..|+..||.|+.+|-||.-.....- .
T Consensus 622 tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~k 701 (867)
T KOG2281|consen 622 TGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKK 701 (867)
T ss_pred CCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhc
Confidence 455555555543 3799999999864322 222 22 4688899999999999875543321 2
Q ss_pred CCcchHHHHHHHHHHHHHHhC---CceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 90 VTSYTALHLVGDLIGLLDKLG---IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~---~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
+....++|+++-+.-+.++.| .++|.+-|||+||.+++....++|+.++..|.-+|..
T Consensus 702 mGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT 762 (867)
T KOG2281|consen 702 MGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVT 762 (867)
T ss_pred cCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcce
Confidence 345578899999988888875 4689999999999999999999999777777655543
No 138
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.05 E-value=4.2e-09 Score=78.26 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=69.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCC-----C---------C--CCCcchHHHHHHHHHHHHH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDA-----P---------P--SVTSYTALHLVGDLIGLLD 107 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~-----~---------~--~~~~~~~~~~~~~~~~~~~ 107 (349)
.+||++||.+.+...|..++..|.-....-+++.-|-.-.+.- + . ....-+....++.+..+++
T Consensus 4 atIi~LHglGDsg~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~Li~ 83 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANLID 83 (206)
T ss_pred EEEEEEecCCCCCccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHHHH
Confidence 4799999999999999888877665555566654332111100 0 0 0012244555666677766
Q ss_pred Hh---C--CceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 108 KL---G--IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 108 ~~---~--~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
+. | ..++.+-|.||||.+++..+..+|..+.++....+..
T Consensus 84 ~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~ 128 (206)
T KOG2112|consen 84 NEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFL 128 (206)
T ss_pred HHHHcCCCccceeEcccCchHHHHHHHHhccccccceeecccccc
Confidence 54 3 3478899999999999999999988788777666543
No 139
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=99.04 E-value=3.7e-08 Score=77.34 Aligned_cols=95 Identities=22% Similarity=0.135 Sum_probs=70.3
Q ss_pred EEccCC--CchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-HhCCceeEEEEechHHH
Q 048209 48 FIHGFP--ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLD-KLGIHQVFLVGHDWGAL 124 (349)
Q Consensus 48 ~~hG~~--~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lvG~S~Gg~ 124 (349)
++|+.+ ++...|..+...|... +.|+.+|.+|++.+.... .+.+++++.+...+. ..+..+++++|||+||.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~ 76 (212)
T smart00824 2 CFPSTAAPSGPHEYARLAAALRGR-RDVSALPLPGFGPGEPLP----ASADALVEAQAEAVLRAAGGRPFVLVGHSSGGL 76 (212)
T ss_pred ccCCCCCCCcHHHHHHHHHhcCCC-ccEEEecCCCCCCCCCCC----CCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHH
Confidence 345443 6777899999999874 899999999998765433 356666665554443 34456899999999999
Q ss_pred HHHHHHhh---CccccceeeeeccCC
Q 048209 125 IAWYFCLF---RPDRVKALVNMSVPF 147 (349)
Q Consensus 125 ia~~~a~~---~p~~v~~lvl~~~~~ 147 (349)
++...+.+ .++.+.+++++++..
T Consensus 77 ~a~~~a~~l~~~~~~~~~l~~~~~~~ 102 (212)
T smart00824 77 LAHAVAARLEARGIPPAAVVLLDTYP 102 (212)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEccCC
Confidence 99988886 345688998887643
No 140
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=7.3e-09 Score=78.59 Aligned_cols=123 Identities=12% Similarity=0.152 Sum_probs=86.1
Q ss_pred eEEEeeCCeeEEEEeeC--------CCCeEEEEccCCCchhhHHHHHHHHhhC-C--ceEEeeCCCCCCCCC---CCC--
Q 048209 25 HTTVGTNGINMHVASIG--------TGPVVLFIHGFPELWYSWRNQLLYLSSR-G--YRAIAPDLRGYGDTD---APP-- 88 (349)
Q Consensus 25 ~~~~~~~g~~~~~~~~g--------~~~~iv~~hG~~~~~~~~~~~~~~L~~~-G--~~v~~~D~~G~G~s~---~~~-- 88 (349)
.++++..|..+.....+ +++.+++++|.+|....|..+++.|... + +.++.+-..||-.-. ...
T Consensus 3 e~~~~~~gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s 82 (301)
T KOG3975|consen 3 EKEYTKSGLPTSILTLKPWVTKSGEDKPLIVWIPGNPGLLGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHS 82 (301)
T ss_pred ceeeeecCCcccceeeeeeeccCCCCceEEEEecCCCCchhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccc
Confidence 34455555544433332 2678999999999999999999888754 2 568888888876543 111
Q ss_pred --CCCcchHHHHHHHHHHHHHHh--CCceeEEEEechHHHHHHHHHhhC--ccccceeeeeccCC
Q 048209 89 --SVTSYTALHLVGDLIGLLDKL--GIHQVFLVGHDWGALIAWYFCLFR--PDRVKALVNMSVPF 147 (349)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~--p~~v~~lvl~~~~~ 147 (349)
....++.+++++--.++++.. ...+++++|||-|+++.+.+.-.. .-.|.+++++-|..
T Consensus 83 ~~~~eifsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTI 147 (301)
T KOG3975|consen 83 HTNEEIFSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTI 147 (301)
T ss_pred cccccccchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchH
Confidence 124567888888777777655 345899999999999999887732 22477777777644
No 141
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.02 E-value=3.7e-09 Score=83.31 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=85.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh-CCceeEEEEechH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL-GIHQVFLVGHDWG 122 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lvG~S~G 122 (349)
|+++++|+.++....|.++...|... ..|+.++.||.+.... ..-+++++++...+.|... ...+++|+|||+|
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~----~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~G 75 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQ----PFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLG 75 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccC-ceeeccccCccccccc----ccCCHHHHHHHHHHHHHHhCCCCCEEEEeeccc
Confidence 58999999999999999999999987 9999999999986333 3447899998887777766 4459999999999
Q ss_pred HHHHHHHHhh---CccccceeeeeccCCC
Q 048209 123 ALIAWYFCLF---RPDRVKALVNMSVPFP 148 (349)
Q Consensus 123 g~ia~~~a~~---~p~~v~~lvl~~~~~~ 148 (349)
|.+|+..|.+ ..+.|..+++++++..
T Consensus 76 G~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 76 GAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred cHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 9999999986 3357999999998776
No 142
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.02 E-value=1.1e-08 Score=83.53 Aligned_cols=63 Identities=19% Similarity=0.123 Sum_probs=46.0
Q ss_pred ccCCcEEEEEecCCccccCCcchhhhccccccccc-CCceeEEEecCCCcccc-hhcHHHHHHHHHHH
Q 048209 280 QIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYV-PYLQEVVVMEGVAHFIN-QEKAEEVGAHIYEF 345 (349)
Q Consensus 280 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~f 345 (349)
.-++|+++.+|..|.++|+.....+.+. +.+.. .++ ++..+++.+|... ........++|.+-
T Consensus 217 ~P~~Pv~i~~g~~D~vvP~~~~~~l~~~--~c~~G~a~V-~~~~~~~~~H~~~~~~~~~~a~~Wl~~r 281 (290)
T PF03583_consen 217 TPTVPVLIYQGTADEVVPPADTDALVAK--WCAAGGADV-EYVRYPGGGHLGAAFASAPDALAWLDDR 281 (290)
T ss_pred CCCCCEEEEecCCCCCCChHHHHHHHHH--HHHcCCCCE-EEEecCCCChhhhhhcCcHHHHHHHHHH
Confidence 4479999999999999999988887643 66666 577 8999999999853 23334444444443
No 143
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.98 E-value=3.7e-07 Score=73.42 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=78.7
Q ss_pred cccceEEEeeCCeeEEEEeeC-----CCCeEEEEccCCCchhhH-------HHHHHHHhhCCceEEeeCCCCCCCCCCCC
Q 048209 21 EKIEHTTVGTNGINMHVASIG-----TGPVVLFIHGFPELWYSW-------RNQLLYLSSRGYRAIAPDLRGYGDTDAPP 88 (349)
Q Consensus 21 ~~~~~~~~~~~g~~~~~~~~g-----~~~~iv~~hG~~~~~~~~-------~~~~~~L~~~G~~v~~~D~~G~G~s~~~~ 88 (349)
...+...+..|+..+--.... +...||+.-|.++.-+.. ..+.+...+.|-+|+++++||.|.|.+..
T Consensus 110 ~~~kRv~Iq~D~~~IDt~~I~~~~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~ 189 (365)
T PF05677_consen 110 SSVKRVPIQYDGVKIDTMAIHQPEAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPP 189 (365)
T ss_pred cceeeEEEeeCCEEEEEEEeeCCCCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCC
Confidence 345666777788887654433 256899999988766551 12233333457899999999999998765
Q ss_pred CCCcchHHHHHHHHHHHHHHhC-------CceeEEEEechHHHHHHHHHhhCc
Q 048209 89 SVTSYTALHLVGDLIGLLDKLG-------IHQVFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~lvG~S~Gg~ia~~~a~~~p 134 (349)
+.++++.|-.+.++++. .+++++.|||+||.++..++..+.
T Consensus 190 -----s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 190 -----SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEV 237 (365)
T ss_pred -----CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcc
Confidence 45788888877777772 257999999999999988666543
No 144
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.90 E-value=2.9e-08 Score=77.49 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=68.3
Q ss_pred CCeeEEEEeeCC--------C-CeEEEEccCCCchhhHHHH-HH-------HHhhCCceEEeeCCC-CCCCCCCCCCCCc
Q 048209 31 NGINMHVASIGT--------G-PVVLFIHGFPELWYSWRNQ-LL-------YLSSRGYRAIAPDLR-GYGDTDAPPSVTS 92 (349)
Q Consensus 31 ~g~~~~~~~~g~--------~-~~iv~~hG~~~~~~~~~~~-~~-------~L~~~G~~v~~~D~~-G~G~s~~~~~~~~ 92 (349)
.|.++.|.-+-+ - |.+||+||.|.....-... .. ..-+.++-|+++.+- =+-.++... .
T Consensus 170 tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d~e~~t---~ 246 (387)
T COG4099 170 TGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFADSEEKT---L 246 (387)
T ss_pred cCceeeEEEecccccCCCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEccccccccccccccc---c
Confidence 477788876643 1 8999999998766543322 21 111112334444421 111122111 1
Q ss_pred chHHHHHHHHHHHH-HHh--CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 93 YTALHLVGDLIGLL-DKL--GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 93 ~~~~~~~~~~~~~~-~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
.-....++-+.+.+ ++. +..+++++|.|+||+-++.++.++|+.+.+.+++++..
T Consensus 247 ~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~ 304 (387)
T COG4099 247 LYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGG 304 (387)
T ss_pred hhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCC
Confidence 12233334444233 333 34589999999999999999999999999999999754
No 145
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.89 E-value=6e-09 Score=81.74 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=70.3
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCC------CC-CCC--------------Cc-c-----hHH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD------AP-PSV--------------TS-Y-----TAL 96 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~------~~-~~~--------------~~-~-----~~~ 96 (349)
|.+||-||++++...|..++-.|+.+||-|.++++|-+-.+- .+ ++. .. . ...
T Consensus 119 PvvvFSHGLggsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~irNeqv~ 198 (399)
T KOG3847|consen 119 PVVVFSHGLGGSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHIRNEQVG 198 (399)
T ss_pred cEEEEecccccchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEeeCHHHH
Confidence 899999999999999999999999999999999998643321 00 000 00 0 011
Q ss_pred HHHHHHH---HHHHHh------------------------CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 97 HLVGDLI---GLLDKL------------------------GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 97 ~~~~~~~---~~~~~~------------------------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
.-++... .+++.+ .-.++.++|||+||..++...+.+- .+++.|++++...+
T Consensus 199 ~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~FrcaI~lD~WM~P 277 (399)
T KOG3847|consen 199 QRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRCAIALDAWMFP 277 (399)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceeeeeeeeeeecc
Confidence 1111111 122222 1127899999999999988777654 58888888875443
No 146
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.86 E-value=2.8e-09 Score=88.13 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=62.4
Q ss_pred CCeEEEEccCCCch--hhHH-HHHHHH-hh--CCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh------C
Q 048209 43 GPVVLFIHGFPELW--YSWR-NQLLYL-SS--RGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL------G 110 (349)
Q Consensus 43 ~~~iv~~hG~~~~~--~~~~-~~~~~L-~~--~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~------~ 110 (349)
+|++|++|||.++. ..|. .+.+.| .. .+++|+++|+...-.. .-...........+.+..++..| .
T Consensus 71 ~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~n~~~vg~~la~~l~~L~~~~g~~ 148 (331)
T PF00151_consen 71 KPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVANTRLVGRQLAKFLSFLINNFGVP 148 (331)
T ss_dssp SEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchhhhHHHHHHHHHHHHHHHHhhcCCC
Confidence 68999999998777 3454 344444 44 4799999998632111 00000011223333444444333 3
Q ss_pred CceeEEEEechHHHHHHHHHhhCcc--ccceeeeeccCCCCC
Q 048209 111 IHQVFLVGHDWGALIAWYFCLFRPD--RVKALVNMSVPFPPR 150 (349)
Q Consensus 111 ~~~~~lvG~S~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~~~ 150 (349)
.++++|||||+||.+|-.++..... +|.+++.++|+.+..
T Consensus 149 ~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~F 190 (331)
T PF00151_consen 149 PENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPLF 190 (331)
T ss_dssp GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TTT
T ss_pred hhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcccccc
Confidence 4589999999999999999988776 899999999977643
No 147
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=98.79 E-value=3.2e-07 Score=80.07 Aligned_cols=123 Identities=13% Similarity=0.151 Sum_probs=81.5
Q ss_pred EEEeeC---CeeEEEEeeCC------CCeEEEEccCCCchhhHHHHHH-------------------HHhhCCceEEeeC
Q 048209 26 TTVGTN---GINMHVASIGT------GPVVLFIHGFPELWYSWRNQLL-------------------YLSSRGYRAIAPD 77 (349)
Q Consensus 26 ~~~~~~---g~~~~~~~~g~------~~~iv~~hG~~~~~~~~~~~~~-------------------~L~~~G~~v~~~D 77 (349)
-+++++ +..++|+-..+ .|.||++.|.+++++.+..+.+ .+.+. .+++.+|
T Consensus 14 Gyl~~~~~~~~~lfyw~~~s~~~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l~iD 92 (415)
T PF00450_consen 14 GYLPVNDNENAHLFYWFFESRNDPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLLFID 92 (415)
T ss_dssp EEEEECTTTTEEEEEEEEE-SSGGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEEEE-
T ss_pred EEEecCCCCCcEEEEEEEEeCCCCCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceEEEe
Confidence 445555 67888886542 6899999999999998855532 11222 6799999
Q ss_pred CC-CCCCCCCCCCC-CcchHHHHHHHHHHHHHHh-------CCceeEEEEechHHHHHHHHHhh----C------ccccc
Q 048209 78 LR-GYGDTDAPPSV-TSYTALHLVGDLIGLLDKL-------GIHQVFLVGHDWGALIAWYFCLF----R------PDRVK 138 (349)
Q Consensus 78 ~~-G~G~s~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~lvG~S~Gg~ia~~~a~~----~------p~~v~ 138 (349)
.| |.|.|...... ...+.++.++++..+++.+ ...+++|.|.|+||..+-.+|.+ . +-.++
T Consensus 93 ~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLk 172 (415)
T PF00450_consen 93 QPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLK 172 (415)
T ss_dssp -STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEE
T ss_pred ecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccc
Confidence 55 99999876532 2346788888888887765 44589999999999876655543 2 23488
Q ss_pred eeeeeccCCCC
Q 048209 139 ALVNMSVPFPP 149 (349)
Q Consensus 139 ~lvl~~~~~~~ 149 (349)
|+++.++...+
T Consensus 173 Gi~IGng~~dp 183 (415)
T PF00450_consen 173 GIAIGNGWIDP 183 (415)
T ss_dssp EEEEESE-SBH
T ss_pred cceecCccccc
Confidence 99998887654
No 148
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.77 E-value=1.2e-07 Score=74.69 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=67.4
Q ss_pred CCCeEEEEccCCCchhhH-HHHHHHHhhCCc--eEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh----CCcee
Q 048209 42 TGPVVLFIHGFPELWYSW-RNQLLYLSSRGY--RAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL----GIHQV 114 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~-~~~~~~L~~~G~--~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 114 (349)
++..+|||||+..+.+.- ...++.....|+ .++.+.+|+.|.-..-.. ...+...-...+..+++.+ +.++|
T Consensus 17 ~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~-d~~~a~~s~~~l~~~L~~L~~~~~~~~I 95 (233)
T PF05990_consen 17 DKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFY-DRESARFSGPALARFLRDLARAPGIKRI 95 (233)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhh-hhhhHHHHHHHHHHHHHHHHhccCCceE
Confidence 467999999999886543 222222222233 799999998876322111 1112333344455555444 66799
Q ss_pred EEEEechHHHHHHHHHhh----Cc-----cccceeeeeccCCCC
Q 048209 115 FLVGHDWGALIAWYFCLF----RP-----DRVKALVNMSVPFPP 149 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~~----~p-----~~v~~lvl~~~~~~~ 149 (349)
++++||||+.+.+.+... .+ .++..+|+++|-.+.
T Consensus 96 ~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~ 139 (233)
T PF05990_consen 96 HILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDN 139 (233)
T ss_pred EEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCH
Confidence 999999999998877543 22 367889999876543
No 149
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.76 E-value=2.6e-08 Score=83.09 Aligned_cols=103 Identities=21% Similarity=0.288 Sum_probs=84.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCce---EEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEe
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYR---AIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGH 119 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~---v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~ 119 (349)
.-++|++||++.+...|..+...+...|+. ++.+++++.. .... .....+++...+.+++...+.+++.|+||
T Consensus 59 ~~pivlVhG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~---~~~~~~ql~~~V~~~l~~~ga~~v~LigH 134 (336)
T COG1075 59 KEPIVLVHGLGGGYGNFLPLDYRLAILGWLTNGVYAFELSGGD-GTYS---LAVRGEQLFAYVDEVLAKTGAKKVNLIGH 134 (336)
T ss_pred CceEEEEccCcCCcchhhhhhhhhcchHHHhcccccccccccC-CCcc---ccccHHHHHHHHHHHHhhcCCCceEEEee
Confidence 348999999988888898888878777777 8889888651 1111 34456777788888888889999999999
Q ss_pred chHHHHHHHHHhhCc--cccceeeeeccCCCC
Q 048209 120 DWGALIAWYFCLFRP--DRVKALVNMSVPFPP 149 (349)
Q Consensus 120 S~Gg~ia~~~a~~~p--~~v~~lvl~~~~~~~ 149 (349)
||||.++..++...+ .+|+.++.++++-..
T Consensus 135 S~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~G 166 (336)
T COG1075 135 SMGGLDSRYYLGVLGGANRVASVVTLGTPHHG 166 (336)
T ss_pred cccchhhHHHHhhcCccceEEEEEEeccCCCC
Confidence 999999999999887 789999999987654
No 150
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.69 E-value=7.3e-08 Score=75.40 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=50.6
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhC--CceEEeeCCCCCCCCCCC-CCCCcchHHHHHHHHHHHHHHhCC--ceeEEEE
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSR--GYRAIAPDLRGYGDTDAP-PSVTSYTALHLVGDLIGLLDKLGI--HQVFLVG 118 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~--G~~v~~~D~~G~G~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lvG 118 (349)
-.|||+||+.++...|..+...+... .+.-..+...+....... ...-....+.+++.+.+.++.... .++.+||
T Consensus 5 hLvV~vHGL~G~~~d~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~~T~~gI~~~g~rL~~eI~~~~~~~~~~~~~IsfIg 84 (217)
T PF05057_consen 5 HLVVFVHGLWGNPADMRYLKNHLEKIPEDLPNARIVVLGYSNNEFKTFDGIDVCGERLAEEILEHIKDYESKIRKISFIG 84 (217)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhhhhcchhhhhhhcccccccccchhhHHHHHHHHHHHHHhccccccccccceEEE
Confidence 47999999999999998887777661 122112222222111110 000111223344445555444443 3899999
Q ss_pred echHHHHHHHHHh
Q 048209 119 HDWGALIAWYFCL 131 (349)
Q Consensus 119 ~S~Gg~ia~~~a~ 131 (349)
|||||.++-.+..
T Consensus 85 HSLGGli~r~al~ 97 (217)
T PF05057_consen 85 HSLGGLIARYALG 97 (217)
T ss_pred ecccHHHHHHHHH
Confidence 9999999876554
No 151
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=98.66 E-value=8.5e-07 Score=70.99 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=51.7
Q ss_pred ccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchh-cHHHHHHHHHHHH
Q 048209 280 QIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQE-KAEEVGAHIYEFI 346 (349)
Q Consensus 280 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e-~~~~~~~~i~~fl 346 (349)
...+|-++++++.|.+++.+++++..+. ..+..-.+ +...++++.|..+.. +|+++.+.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~--~~~~G~~V-~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEE--ARRKGWDV-RAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHH--HHHcCCeE-EEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 5579999999999999999988876642 33333345 788899999998765 8999999999985
No 152
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.65 E-value=6.4e-07 Score=70.44 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=86.8
Q ss_pred ccceEEEeeCCeeEEEEeeCC------CCeEEEEccCCCchhhHHHHH--HHHhh-CCceEEeeCCC-------CCCCCC
Q 048209 22 KIEHTTVGTNGINMHVASIGT------GPVVLFIHGFPELWYSWRNQL--LYLSS-RGYRAIAPDLR-------GYGDTD 85 (349)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~g~------~~~iv~~hG~~~~~~~~~~~~--~~L~~-~G~~v~~~D~~-------G~G~s~ 85 (349)
..+...+..+|.+..|+.+-+ .|.||++||-.++...+.... +.|++ .||-|+.+|-- +.+.+.
T Consensus 34 ~~~~~s~~~~g~~r~y~l~vP~g~~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~ 113 (312)
T COG3509 34 GSSVASFDVNGLKRSYRLYVPPGLPSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWF 113 (312)
T ss_pred cCCccccccCCCccceEEEcCCCCCCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCcccccC
Confidence 345566777888877776543 478999999998887765554 45554 49999999532 222232
Q ss_pred CCCC--CCcchHHHHHHHHHHHHHHhCCc--eeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 86 APPS--VTSYTALHLVGDLIGLLDKLGIH--QVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 86 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
.+.+ ...-+...+.+.+..++.+.+++ +|++.|.|-||.++..++..+|+.+.++..+++..
T Consensus 114 ~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 114 GPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 1211 01113334445555555666666 89999999999999999999999999998888765
No 153
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=80.72 Aligned_cols=99 Identities=19% Similarity=0.136 Sum_probs=58.9
Q ss_pred CCeEEEEccCC--CchhhHHHHH-HHHhhCC--ceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH--------h
Q 048209 43 GPVVLFIHGFP--ELWYSWRNQL-LYLSSRG--YRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK--------L 109 (349)
Q Consensus 43 ~~~iv~~hG~~--~~~~~~~~~~-~~L~~~G--~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~--------~ 109 (349)
.|.++++||.+ .....|...+ ..|.-.| ..|-++|++.-- ...++...++.+..+.++ +
T Consensus 176 spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~i--------gG~nI~h~ae~~vSf~r~kvlei~gef 247 (784)
T KOG3253|consen 176 SPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPI--------GGANIKHAAEYSVSFDRYKVLEITGEF 247 (784)
T ss_pred CceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCC--------CCcchHHHHHHHHHHhhhhhhhhhccC
Confidence 57899999987 2222222222 2233222 456677776311 112444455555444442 2
Q ss_pred CCceeEEEEechHHHHHHHHHhhC-ccccceeeeeccCCCC
Q 048209 110 GIHQVFLVGHDWGALIAWYFCLFR-PDRVKALVNMSVPFPP 149 (349)
Q Consensus 110 ~~~~~~lvG~S~Gg~ia~~~a~~~-p~~v~~lvl~~~~~~~ 149 (349)
...+++|+|.|||+.++.+.+... ...|+++|+++-+...
T Consensus 248 pha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~ 288 (784)
T KOG3253|consen 248 PHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDT 288 (784)
T ss_pred CCCceEEEecccCceeeEEeccccCCceEEEEEEecccccC
Confidence 345899999999988888777653 3358999988865543
No 154
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=98.59 E-value=2e-05 Score=65.08 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=80.2
Q ss_pred hcccceEEEeeCCeeEE--EEeeCC---CCeEEEEccCCCch---hhHHHHHHHHhhCCceEEeeCCCCCCCC--CC---
Q 048209 20 MEKIEHTTVGTNGINMH--VASIGT---GPVVLFIHGFPELW---YSWRNQLLYLSSRGYRAIAPDLRGYGDT--DA--- 86 (349)
Q Consensus 20 ~~~~~~~~~~~~g~~~~--~~~~g~---~~~iv~~hG~~~~~---~~~~~~~~~L~~~G~~v~~~D~~G~G~s--~~--- 86 (349)
++.-+...+..++.+.- |..... .-.||++||.+.+. ....++-+.|.+.|+.++++.+|.--.. ..
T Consensus 59 lp~~e~~~L~~~~~~flaL~~~~~~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~ 138 (310)
T PF12048_consen 59 LPADEVQWLQAGEERFLALWRPANSAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRAT 138 (310)
T ss_pred CCHhhcEEeecCCEEEEEEEecccCCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCC
Confidence 34445556666655532 332222 24899999998775 4456677788899999999988861100 00
Q ss_pred -----------CCCCC--c---------ch----HHHHHHHHHHHH---HHhCCceeEEEEechHHHHHHHHHhhCcc-c
Q 048209 87 -----------PPSVT--S---------YT----ALHLVGDLIGLL---DKLGIHQVFLVGHDWGALIAWYFCLFRPD-R 136 (349)
Q Consensus 87 -----------~~~~~--~---------~~----~~~~~~~~~~~~---~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~-~ 136 (349)
..+.. . -. .+.+..-+.+.+ ...+.++++||||+.|+..++.+....+. .
T Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~ 218 (310)
T PF12048_consen 139 EAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPPM 218 (310)
T ss_pred CCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCcc
Confidence 00000 0 00 112222333333 33365679999999999999999988764 5
Q ss_pred cceeeeeccCCC
Q 048209 137 VKALVNMSVPFP 148 (349)
Q Consensus 137 v~~lvl~~~~~~ 148 (349)
++++|++++-..
T Consensus 219 ~daLV~I~a~~p 230 (310)
T PF12048_consen 219 PDALVLINAYWP 230 (310)
T ss_pred cCeEEEEeCCCC
Confidence 899999998543
No 155
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.58 E-value=6e-07 Score=68.71 Aligned_cols=105 Identities=23% Similarity=0.237 Sum_probs=76.0
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCC-----ceEEeeCCCCC----CCCCCCC---------CCCcchHHHHHHHHHHH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRG-----YRAIAPDLRGY----GDTDAPP---------SVTSYTALHLVGDLIGL 105 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G-----~~v~~~D~~G~----G~s~~~~---------~~~~~~~~~~~~~~~~~ 105 (349)
-|.||+||.++++.....++..|...+ --+..+|--|. |.=++.. +...-+..++...+..+
T Consensus 46 iPTIfIhGsgG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~~ 125 (288)
T COG4814 46 IPTIFIHGSGGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKKA 125 (288)
T ss_pred cceEEEecCCCChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHHH
Confidence 388999999999999999999998763 12555665552 1111111 11223456667777777
Q ss_pred HHHh----CCceeEEEEechHHHHHHHHHhhCcc-----ccceeeeeccCCC
Q 048209 106 LDKL----GIHQVFLVGHDWGALIAWYFCLFRPD-----RVKALVNMSVPFP 148 (349)
Q Consensus 106 ~~~~----~~~~~~lvG~S~Gg~ia~~~a~~~p~-----~v~~lvl~~~~~~ 148 (349)
+.+| +.+++.+|||||||.-...|+..+.. .+..+|.+++++.
T Consensus 126 msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 126 MSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 7777 56799999999999988888886532 4899999999877
No 156
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.55 E-value=1.7e-06 Score=74.24 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=63.9
Q ss_pred CCeEEEEccCCCch-hhHHHHHHHHhhCC----ceEEeeCCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHh-----CC
Q 048209 43 GPVVLFIHGFPELW-YSWRNQLLYLSSRG----YRAIAPDLRGY-GDTDAPPSVTSYTALHLVGDLIGLLDKL-----GI 111 (349)
Q Consensus 43 ~~~iv~~hG~~~~~-~~~~~~~~~L~~~G----~~v~~~D~~G~-G~s~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 111 (349)
-|+|+++||-.-.. ......+..|.++| ..++.+|..+. .++..... ...-...+++++.-.+++. +.
T Consensus 209 ~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el~~-~~~f~~~l~~eLlP~I~~~y~~~~d~ 287 (411)
T PRK10439 209 RPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQELPC-NADFWLAVQQELLPQVRAIAPFSDDA 287 (411)
T ss_pred CCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECCCCcccccccCCc-hHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 47899999954211 11234445555555 33567775321 11111110 1111233445665656553 23
Q ss_pred ceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 112 HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 112 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
++.+|+|+||||..|+.++.++|+.+.+++.+++.+
T Consensus 288 ~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 288 DRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred cceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 468899999999999999999999999999999864
No 157
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.54 E-value=1.7e-06 Score=75.70 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=75.7
Q ss_pred eeEEEEeeCC-----CCeEEEEccCCCchhhH--HHHHHHHhhC-CceEEeeCCCCCCCCCCCC-----CCCcchHHHHH
Q 048209 33 INMHVASIGT-----GPVVLFIHGFPELWYSW--RNQLLYLSSR-GYRAIAPDLRGYGDTDAPP-----SVTSYTALHLV 99 (349)
Q Consensus 33 ~~~~~~~~g~-----~~~iv~~hG~~~~~~~~--~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~-----~~~~~~~~~~~ 99 (349)
.+.+|+.... +|.+|++-|-+.-...+ ..+...|+++ |--|+++++|-+|.|.+.. ....++.++.+
T Consensus 14 f~qRY~~n~~~~~~~gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QAL 93 (434)
T PF05577_consen 14 FSQRYWVNDQYYKPGGPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQAL 93 (434)
T ss_dssp EEEEEEEE-TT--TTSEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHH
T ss_pred EEEEEEEEhhhcCCCCCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHH
Confidence 3456665532 56666665544322222 2244556554 7789999999999998643 23456889999
Q ss_pred HHHHHHHHHhC-------CceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCC
Q 048209 100 GDLIGLLDKLG-------IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPR 150 (349)
Q Consensus 100 ~~~~~~~~~~~-------~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 150 (349)
+|+..+++++. ..|++++|.|+||++|..+-.+||+.|.+.+..++++...
T Consensus 94 aD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~a~ 151 (434)
T PF05577_consen 94 ADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQAK 151 (434)
T ss_dssp HHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CCHC
T ss_pred HHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceeeee
Confidence 99999888763 2389999999999999999999999999999999887643
No 158
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.52 E-value=2.1e-06 Score=64.38 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=83.5
Q ss_pred EeeCCee--EEEEeeCCCCeEEEEccCCCch---hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHH
Q 048209 28 VGTNGIN--MHVASIGTGPVVLFIHGFPELW---YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDL 102 (349)
Q Consensus 28 ~~~~g~~--~~~~~~g~~~~iv~~hG~~~~~---~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~ 102 (349)
+..++.. +.|...-.+.-|||+-|++..- .....+...|.+.++.++-+-++.+ .......++.+.++|+
T Consensus 19 F~y~~Ks~~va~~~gv~~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ss-----y~G~Gt~slk~D~edl 93 (299)
T KOG4840|consen 19 FVYDSKSSLVAYSNGVESVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSS-----YNGYGTFSLKDDVEDL 93 (299)
T ss_pred EEecCccceeeeccCceEEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccc-----ccccccccccccHHHH
Confidence 4444433 3333333367899999988653 3356778899999999999887732 1122345778889999
Q ss_pred HHHHHHhCC----ceeEEEEechHHHHHHHHHh--hCccccceeeeeccCCCCC
Q 048209 103 IGLLDKLGI----HQVFLVGHDWGALIAWYFCL--FRPDRVKALVNMSVPFPPR 150 (349)
Q Consensus 103 ~~~~~~~~~----~~~~lvG~S~Gg~ia~~~a~--~~p~~v~~lvl~~~~~~~~ 150 (349)
..++++++. ..++|+|||.|+.=.+.|.. ..|..+++.|+.+|..+..
T Consensus 94 ~~l~~Hi~~~~fSt~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 94 KCLLEHIQLCGFSTDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred HHHHHHhhccCcccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 999998843 27999999999997777763 3466789999998876653
No 159
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.49 E-value=8.5e-07 Score=75.79 Aligned_cols=115 Identities=22% Similarity=0.395 Sum_probs=74.8
Q ss_pred eEEEeeCCeeEEEEeeCCCCeEEEEc-cCCCchhhHHHHHHHHhhCCce------EEeeCCCCCCCCCCCCCCCcchHHH
Q 048209 25 HTTVGTNGINMHVASIGTGPVVLFIH-GFPELWYSWRNQLLYLSSRGYR------AIAPDLRGYGDTDAPPSVTSYTALH 97 (349)
Q Consensus 25 ~~~~~~~g~~~~~~~~g~~~~iv~~h-G~~~~~~~~~~~~~~L~~~G~~------v~~~D~~G~G~s~~~~~~~~~~~~~ 97 (349)
..+...+|+.+.+...|....|-.+- ........|..+++.|.+.||. ..-+|+|- +.. ..++
T Consensus 32 ~~~~~~~gv~i~~~~~g~~~~i~~ld~~~~~~~~~~~~li~~L~~~GY~~~~~l~~~pYDWR~---~~~-------~~~~ 101 (389)
T PF02450_consen 32 WHYSNDPGVEIRVPGFGGTSGIEYLDPSFITGYWYFAKLIENLEKLGYDRGKDLFAAPYDWRL---SPA-------ERDE 101 (389)
T ss_pred CceecCCCceeecCCCCceeeeeecccccccccchHHHHHHHHHhcCcccCCEEEEEeechhh---chh-------hHHH
Confidence 34445567777776666423333332 2222233899999999998875 22378881 111 2334
Q ss_pred HHHHHHHHHHHh---CCceeEEEEechHHHHHHHHHhhCcc------ccceeeeeccCCCC
Q 048209 98 LVGDLIGLLDKL---GIHQVFLVGHDWGALIAWYFCLFRPD------RVKALVNMSVPFPP 149 (349)
Q Consensus 98 ~~~~~~~~~~~~---~~~~~~lvG~S~Gg~ia~~~a~~~p~------~v~~lvl~~~~~~~ 149 (349)
....+.+.++.. ..++++||||||||.++..+....+. .|+++|.++++...
T Consensus 102 ~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~G 162 (389)
T PF02450_consen 102 YFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGG 162 (389)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCC
Confidence 445555555443 35799999999999999999887643 59999999988654
No 160
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.44 E-value=1.7e-06 Score=69.28 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=66.8
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHHhCC--ceeEEEEec
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDL-IGLLDKLGI--HQVFLVGHD 120 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~lvG~S 120 (349)
..||++-|..+-.+. .....=.+.||.|+.+++||++.|...+- .......++.+ .-.++.+|. +.+++.|||
T Consensus 244 ~LvIC~EGNAGFYEv--G~m~tP~~lgYsvLGwNhPGFagSTG~P~--p~n~~nA~DaVvQfAI~~Lgf~~edIilygWS 319 (517)
T KOG1553|consen 244 DLVICFEGNAGFYEV--GVMNTPAQLGYSVLGWNHPGFAGSTGLPY--PVNTLNAADAVVQFAIQVLGFRQEDIILYGWS 319 (517)
T ss_pred eEEEEecCCccceEe--eeecChHHhCceeeccCCCCccccCCCCC--cccchHHHHHHHHHHHHHcCCCccceEEEEee
Confidence 356666666543322 11122234589999999999999988763 22223333433 334566665 479999999
Q ss_pred hHHHHHHHHHhhCccccceeeeeccC
Q 048209 121 WGALIAWYFCLFRPDRVKALVNMSVP 146 (349)
Q Consensus 121 ~Gg~ia~~~a~~~p~~v~~lvl~~~~ 146 (349)
.||.-+..+|..||+ |+++|+-++.
T Consensus 320 IGGF~~~waAs~YPd-VkavvLDAtF 344 (517)
T KOG1553|consen 320 IGGFPVAWAASNYPD-VKAVVLDATF 344 (517)
T ss_pred cCCchHHHHhhcCCC-ceEEEeecch
Confidence 999999999999996 8998876653
No 161
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=98.42 E-value=2.2e-06 Score=65.43 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=55.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCce-EEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEech
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYR-AIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDW 121 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~-v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~ 121 (349)
+..|||..|||++...+..+.. ..++. ++++|+|.. +.+. | -.+.+++.|||+||
T Consensus 11 ~~LilfF~GWg~d~~~f~hL~~---~~~~D~l~~yDYr~l------------~~d~---~------~~~y~~i~lvAWSm 66 (213)
T PF04301_consen 11 KELILFFAGWGMDPSPFSHLIL---PENYDVLICYDYRDL------------DFDF---D------LSGYREIYLVAWSM 66 (213)
T ss_pred CeEEEEEecCCCChHHhhhccC---CCCccEEEEecCccc------------cccc---c------cccCceEEEEEEeH
Confidence 4689999999999988776531 22354 567788721 1110 1 12457999999999
Q ss_pred HHHHHHHHHhhCccccceeeeeccCCCCC
Q 048209 122 GALIAWYFCLFRPDRVKALVNMSVPFPPR 150 (349)
Q Consensus 122 Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 150 (349)
|=.+|..+....| ++..|.+++...+.
T Consensus 67 GVw~A~~~l~~~~--~~~aiAINGT~~Pi 93 (213)
T PF04301_consen 67 GVWAANRVLQGIP--FKRAIAINGTPYPI 93 (213)
T ss_pred HHHHHHHHhccCC--cceeEEEECCCCCc
Confidence 9999988766543 67777777755443
No 162
>PLN02209 serine carboxypeptidase
Probab=98.41 E-value=0.00012 Score=63.41 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=76.1
Q ss_pred EEEeeC---CeeEEEEeeCC------CCeEEEEccCCCchhhHHHHHH----------------HHhhC------CceEE
Q 048209 26 TTVGTN---GINMHVASIGT------GPVVLFIHGFPELWYSWRNQLL----------------YLSSR------GYRAI 74 (349)
Q Consensus 26 ~~~~~~---g~~~~~~~~g~------~~~iv~~hG~~~~~~~~~~~~~----------------~L~~~------G~~v~ 74 (349)
.+++++ +..++|+-..+ .|.|+++.|.++++..+..+.+ .|... -.+++
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anll 121 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANII 121 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcEE
Confidence 445553 46677665442 5899999999998877644321 11111 15799
Q ss_pred eeC-CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh-------CCceeEEEEechHHHHHHHHHhh----C------ccc
Q 048209 75 APD-LRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL-------GIHQVFLVGHDWGALIAWYFCLF----R------PDR 136 (349)
Q Consensus 75 ~~D-~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lvG~S~Gg~ia~~~a~~----~------p~~ 136 (349)
.+| ..|.|.|.........+.++.++++..+++.. ...++++.|.|+||..+-.+|.. . +-.
T Consensus 122 fiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~in 201 (437)
T PLN02209 122 FLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPIN 201 (437)
T ss_pred EecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCcee
Confidence 999 55889986443211122233456665555543 23489999999999865555542 1 124
Q ss_pred cceeeeeccCCCC
Q 048209 137 VKALVNMSVPFPP 149 (349)
Q Consensus 137 v~~lvl~~~~~~~ 149 (349)
++|+++.++...+
T Consensus 202 l~Gi~igng~td~ 214 (437)
T PLN02209 202 LQGYVLGNPITHI 214 (437)
T ss_pred eeeEEecCcccCh
Confidence 6888888876554
No 163
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=98.39 E-value=3.8e-06 Score=73.03 Aligned_cols=122 Identities=17% Similarity=0.179 Sum_probs=84.1
Q ss_pred EEeeCCeeEEEEeeCC-----CCeEEEEccCCCchh-----hHHHHHH---HHhhCCceEEeeCCCCCCCCCCCCCCCcc
Q 048209 27 TVGTNGINMHVASIGT-----GPVVLFIHGFPELWY-----SWRNQLL---YLSSRGYRAIAPDLRGYGDTDAPPSVTSY 93 (349)
Q Consensus 27 ~~~~~g~~~~~~~~g~-----~~~iv~~hG~~~~~~-----~~~~~~~---~L~~~G~~v~~~D~~G~G~s~~~~~~~~~ 93 (349)
+.--||++|+-..+-+ .|+++..+-++-... .-....+ .++.+||.|+..|.||.|.|+..-+.. +
T Consensus 24 V~MRDGvrL~~dIy~Pa~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~~-~ 102 (563)
T COG2936 24 VPMRDGVRLAADIYRPAGAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDPE-S 102 (563)
T ss_pred EEecCCeEEEEEEEccCCCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCccccee-c
Confidence 3444899998665543 577888782222211 1122233 577889999999999999999876422 2
Q ss_pred h-HHHHHHHHHHHHHHhCC--ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 94 T-ALHLVGDLIGLLDKLGI--HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 94 ~-~~~~~~~~~~~~~~~~~--~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
+ -.+..-|+.+++..... .+|..+|.|++|...+.+|+..|-.+++++...+..+.
T Consensus 103 ~~E~~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~ 161 (563)
T COG2936 103 SREAEDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR 161 (563)
T ss_pred cccccchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence 2 22233455555555432 38999999999999999999988889999888877664
No 164
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=2.3e-05 Score=60.52 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=47.3
Q ss_pred EEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcc-cchhcHHHHHHHHHHHHHh
Q 048209 285 VKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHF-INQEKAEEVGAHIYEFIKK 348 (349)
Q Consensus 285 vl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~-~~~e~~~~~~~~i~~fl~~ 348 (349)
++++.+.+|..+|...... +.+..|++ ++..++ .||. .++-+.+.+-.+|.+-|++
T Consensus 309 ~ivv~A~~D~Yipr~gv~~------lQ~~WPg~-eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRS------LQEIWPGC-EVRYLE-GGHVSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred EEEEEecCCccccccCcHH------HHHhCCCC-EEEEee-cCceeeeehhchHHHHHHHHHHHh
Confidence 5778999999999988776 78899999 999998 4996 4667888999999888765
No 165
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.34 E-value=1.7e-06 Score=69.92 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=64.6
Q ss_pred CeEEEEccCCCchhhH--HHHHHHHhhCC----ceEEeeCCCCCCCCCC------------CCCCCcchHH-HHHHHHHH
Q 048209 44 PVVLFIHGFPELWYSW--RNQLLYLSSRG----YRAIAPDLRGYGDTDA------------PPSVTSYTAL-HLVGDLIG 104 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~--~~~~~~L~~~G----~~v~~~D~~G~G~s~~------------~~~~~~~~~~-~~~~~~~~ 104 (349)
|+|+++||.......+ ...+..+.+.| ..+++++..+.+.... ........+. .+.++|..
T Consensus 25 PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~p 104 (251)
T PF00756_consen 25 PVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSRRADDSGGGDAYETFLTEELIP 104 (251)
T ss_dssp EEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHTHHHH
T ss_pred EEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccccccccCCCCcccceehhccchh
Confidence 7899999973222222 22333333332 4466667655541110 0000111222 34456666
Q ss_pred HHHHh-CCc--eeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 105 LLDKL-GIH--QVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 105 ~~~~~-~~~--~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
.++.. ... +..++|+||||..|+.++.++|+.+.+++.+++....
T Consensus 105 ~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~ 152 (251)
T PF00756_consen 105 YIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDP 152 (251)
T ss_dssp HHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESET
T ss_pred HHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccc
Confidence 66554 322 2789999999999999999999999999999986554
No 166
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=2.8e-06 Score=75.29 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=73.3
Q ss_pred CCeeEEEEeeCC-----------CCeEEEEccCCCchhhHHHHHHHHhh----------------CCceEEeeCCCCCCC
Q 048209 31 NGINMHVASIGT-----------GPVVLFIHGFPELWYSWRNQLLYLSS----------------RGYRAIAPDLRGYGD 83 (349)
Q Consensus 31 ~g~~~~~~~~g~-----------~~~iv~~hG~~~~~~~~~~~~~~L~~----------------~G~~v~~~D~~G~G~ 83 (349)
+.+.++.+..|. +-||+|++|..|+...-+.++...+. ..|+.+++|+-+
T Consensus 66 ~kY~LYLY~Egs~~~e~~~lelsGIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnE--- 142 (973)
T KOG3724|consen 66 DKYSLYLYREGSRWWERSTLELSGIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNE--- 142 (973)
T ss_pred CceEEEEecccccccccccccCCCceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccc---
Confidence 456666555553 46999999999998887777754442 125666777642
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHh-----C--------CceeEEEEechHHHHHHHHHhh---CccccceeeeeccCC
Q 048209 84 TDAPPSVTSYTALHLVGDLIGLLDKL-----G--------IHQVFLVGHDWGALIAWYFCLF---RPDRVKALVNMSVPF 147 (349)
Q Consensus 84 s~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~lvG~S~Gg~ia~~~a~~---~p~~v~~lvl~~~~~ 147 (349)
........+..++++-+.+.++.+ + .+.|++|||||||++|...+.. .++.|.-+|..++|-
T Consensus 143 --e~tAm~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH 220 (973)
T KOG3724|consen 143 --EFTAMHGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPH 220 (973)
T ss_pred --hhhhhccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcc
Confidence 111123446666666666555544 2 1249999999999999877653 345677777777654
Q ss_pred C
Q 048209 148 P 148 (349)
Q Consensus 148 ~ 148 (349)
.
T Consensus 221 ~ 221 (973)
T KOG3724|consen 221 A 221 (973)
T ss_pred c
Confidence 3
No 167
>PLN02606 palmitoyl-protein thioesterase
Probab=98.29 E-value=5.2e-06 Score=66.46 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=69.8
Q ss_pred CCeEEEEccCC--CchhhHHHHHHHHhhC-CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhC--CceeEEE
Q 048209 43 GPVVLFIHGFP--ELWYSWRNQLLYLSSR-GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLG--IHQVFLV 117 (349)
Q Consensus 43 ~~~iv~~hG~~--~~~~~~~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lv 117 (349)
..|||+.||+| .+...+..+.+.+.+. |+.+.++. .|-+. ..+ ......++++.+.+.+.... ..-++++
T Consensus 26 ~~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~~---~~s-~~~~~~~Qv~~vce~l~~~~~L~~G~naI 100 (306)
T PLN02606 26 SVPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNGV---QDS-LFMPLRQQASIACEKIKQMKELSEGYNIV 100 (306)
T ss_pred CCCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCCc---ccc-cccCHHHHHHHHHHHHhcchhhcCceEEE
Confidence 45899999999 5556777887777533 66666665 33222 111 12345666666665555431 1248999
Q ss_pred EechHHHHHHHHHhhCcc--ccceeeeeccCCC
Q 048209 118 GHDWGALIAWYFCLFRPD--RVKALVNMSVPFP 148 (349)
Q Consensus 118 G~S~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~ 148 (349)
|+|.||.++-.++.+.|+ .|+.+|.++++-.
T Consensus 101 GfSQGglflRa~ierc~~~p~V~nlISlggph~ 133 (306)
T PLN02606 101 AESQGNLVARGLIEFCDNAPPVINYVSLGGPHA 133 (306)
T ss_pred EEcchhHHHHHHHHHCCCCCCcceEEEecCCcC
Confidence 999999999999999887 4999999998643
No 168
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=98.29 E-value=0.0008 Score=57.98 Aligned_cols=126 Identities=15% Similarity=0.043 Sum_probs=78.2
Q ss_pred EEEeeC---CeeEEEEeeCC------CCeEEEEccCCCchhhHHHHHH-----------HHhh------CCceEEeeCCC
Q 048209 26 TTVGTN---GINMHVASIGT------GPVVLFIHGFPELWYSWRNQLL-----------YLSS------RGYRAIAPDLR 79 (349)
Q Consensus 26 ~~~~~~---g~~~~~~~~g~------~~~iv~~hG~~~~~~~~~~~~~-----------~L~~------~G~~v~~~D~~ 79 (349)
.+++++ +..++|+-..+ .|.||++.|.+|.++.-..+.+ .|.. +--+++.+|.|
T Consensus 47 GYv~v~~~~~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~P 126 (454)
T KOG1282|consen 47 GYVTVNESEGRQLFYWFFESENNPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQP 126 (454)
T ss_pred ceEECCCCCCceEEEEEEEccCCCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecC
Confidence 456665 78898885542 6899999999988765422211 1111 01368889987
Q ss_pred -CCCCCCCCCCC-CcchHHHHHHHHHHHHHHh-------CCceeEEEEechHHHHHHHHHhh----Cc------ccccee
Q 048209 80 -GYGDTDAPPSV-TSYTALHLVGDLIGLLDKL-------GIHQVFLVGHDWGALIAWYFCLF----RP------DRVKAL 140 (349)
Q Consensus 80 -G~G~s~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~lvG~S~Gg~ia~~~a~~----~p------~~v~~l 140 (349)
|.|.|...... ...+-+..++|...++... ..+++++.|-|++|...-.+|.+ .. -.++|+
T Consensus 127 vGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~ 206 (454)
T KOG1282|consen 127 VGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGY 206 (454)
T ss_pred CcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEE
Confidence 88888654421 1123444555655555432 34589999999999765555542 21 247888
Q ss_pred eeeccCCCCCC
Q 048209 141 VNMSVPFPPRN 151 (349)
Q Consensus 141 vl~~~~~~~~~ 151 (349)
++-++......
T Consensus 207 ~IGNg~td~~~ 217 (454)
T KOG1282|consen 207 AIGNGLTDPEI 217 (454)
T ss_pred EecCcccCccc
Confidence 88887666443
No 169
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=98.25 E-value=0.00041 Score=60.11 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCcEEEEEecCCccccCCcchhhhccccc------------------ccccCC-ceeEEEecCCCcccchhcHHHHHHHH
Q 048209 282 EVPVKFIVGDQDLVYNNKGMKEYIHDGGF------------------KKYVPY-LQEVVVMEGVAHFINQEKAEEVGAHI 342 (349)
Q Consensus 282 ~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~------------------~~~~~~-~~~~~~~~~~gH~~~~e~~~~~~~~i 342 (349)
..+||+..|..|.+|+....+.+++.-.+ .+...+ . .+..+-+|||++. .+|+...+.+
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~l-tfv~V~~AGHmVp-~qP~~al~m~ 424 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKM-TFATIKAGGHTAE-YRPNETFIMF 424 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCce-EEEEEcCCCCCCC-CCHHHHHHHH
Confidence 58999999999999998776665533221 122222 4 5677889999996 5899999999
Q ss_pred HHHHHh
Q 048209 343 YEFIKK 348 (349)
Q Consensus 343 ~~fl~~ 348 (349)
..||+.
T Consensus 425 ~~Fi~~ 430 (433)
T PLN03016 425 QRWISG 430 (433)
T ss_pred HHHHcC
Confidence 999964
No 170
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.21 E-value=1.3e-05 Score=65.21 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=66.6
Q ss_pred CCeEEEEccCCCchhh-HHHHHHHHhhCC--ceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh----CCceeE
Q 048209 43 GPVVLFIHGFPELWYS-WRNQLLYLSSRG--YRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL----GIHQVF 115 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~-~~~~~~~L~~~G--~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 115 (349)
+..+||+||+..+-+. -...++.....| ...+.+-+|..|.--.-.. ...+...-..+++.+++.+ ..++++
T Consensus 116 k~vlvFvHGfNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~-DreS~~~Sr~aLe~~lr~La~~~~~~~I~ 194 (377)
T COG4782 116 KTVLVFVHGFNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNY-DRESTNYSRPALERLLRYLATDKPVKRIY 194 (377)
T ss_pred CeEEEEEcccCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeeccc-chhhhhhhHHHHHHHHHHHHhCCCCceEE
Confidence 5689999999876433 334444444333 4677888886665322211 1112333344555555555 567899
Q ss_pred EEEechHHHHHHHHHhh--------CccccceeeeeccCCCC
Q 048209 116 LVGHDWGALIAWYFCLF--------RPDRVKALVNMSVPFPP 149 (349)
Q Consensus 116 lvG~S~Gg~ia~~~a~~--------~p~~v~~lvl~~~~~~~ 149 (349)
|++||||+.++++.... -+.+++-+|+.+|-.+.
T Consensus 195 ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 195 LLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred EEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 99999999998876542 23468888888875543
No 171
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.17 E-value=8.7e-06 Score=72.74 Aligned_cols=105 Identities=15% Similarity=0.061 Sum_probs=64.8
Q ss_pred CCeEEEEccCCC---chhhHHHHHHHHhhC--CceEEeeCCC----CCCCCCCCCCCCcchHHHHHHH---HHHHHHHhC
Q 048209 43 GPVVLFIHGFPE---LWYSWRNQLLYLSSR--GYRAIAPDLR----GYGDTDAPPSVTSYTALHLVGD---LIGLLDKLG 110 (349)
Q Consensus 43 ~~~iv~~hG~~~---~~~~~~~~~~~L~~~--G~~v~~~D~~----G~G~s~~~~~~~~~~~~~~~~~---~~~~~~~~~ 110 (349)
.|+||++||.+. +...+ ....|.+. |+.|+.+++| |+..+..........+.|+... +.+-++..|
T Consensus 95 ~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~fg 172 (493)
T cd00312 95 LPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAFG 172 (493)
T ss_pred CCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHhC
Confidence 589999999652 22221 22334433 3899999999 3333322111123334444443 344444554
Q ss_pred C--ceeEEEEechHHHHHHHHHhh--CccccceeeeeccCCCC
Q 048209 111 I--HQVFLVGHDWGALIAWYFCLF--RPDRVKALVNMSVPFPP 149 (349)
Q Consensus 111 ~--~~~~lvG~S~Gg~ia~~~a~~--~p~~v~~lvl~~~~~~~ 149 (349)
. ++|.|+|+|.||..+..++.. .+..++++|++++....
T Consensus 173 gd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 173 GDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred CCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 3 489999999999988877775 34568999999876543
No 172
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.09 E-value=0.00014 Score=60.64 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCeEEEEccCCCchh----hH---HHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeE
Q 048209 43 GPVVLFIHGFPELWY----SW---RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVF 115 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~----~~---~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (349)
.|.||++||.|-.-. .. ..+...|. ...++++|+.-........ .-...+.+.++-...+++..|.+.++
T Consensus 122 DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~~~-~yPtQL~qlv~~Y~~Lv~~~G~~nI~ 198 (374)
T PF10340_consen 122 DPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEHGH-KYPTQLRQLVATYDYLVESEGNKNII 198 (374)
T ss_pred CcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccCCC-cCchHHHHHHHHHHHHHhccCCCeEE
Confidence 589999999874322 22 22223333 3588899976433000111 12335667777777777777889999
Q ss_pred EEEechHHHHHHHHHhh--Ccc---ccceeeeeccCCCCC
Q 048209 116 LVGHDWGALIAWYFCLF--RPD---RVKALVNMSVPFPPR 150 (349)
Q Consensus 116 lvG~S~Gg~ia~~~a~~--~p~---~v~~lvl~~~~~~~~ 150 (349)
|+|-|.||.+++.+... .+. .-+++|+++|.+...
T Consensus 199 LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 199 LMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred EEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 99999999999877653 111 258999999987764
No 173
>PLN02633 palmitoyl protein thioesterase family protein
Probab=98.05 E-value=5.5e-05 Score=60.78 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=69.3
Q ss_pred CCeEEEEccCCCchh--hHHHHHHHHhhC-CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhC--CceeEEE
Q 048209 43 GPVVLFIHGFPELWY--SWRNQLLYLSSR-GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLG--IHQVFLV 117 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~--~~~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lv 117 (349)
..|+|+.||+|.+.. ....+.+.+.+. |..+.++.. |.+. ..+ ......++++.+.+.+.... ..-++++
T Consensus 25 ~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i---g~~~-~~s-~~~~~~~Qve~vce~l~~~~~l~~G~naI 99 (314)
T PLN02633 25 SVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI---GNGV-GDS-WLMPLTQQAEIACEKVKQMKELSQGYNIV 99 (314)
T ss_pred CCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE---CCCc-ccc-ceeCHHHHHHHHHHHHhhchhhhCcEEEE
Confidence 458999999986543 455555555442 677777754 3332 111 33456666766666665531 1249999
Q ss_pred EechHHHHHHHHHhhCcc--ccceeeeeccCCC
Q 048209 118 GHDWGALIAWYFCLFRPD--RVKALVNMSVPFP 148 (349)
Q Consensus 118 G~S~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~ 148 (349)
|+|.||.++-.++.+.|+ .|+.+|.++++-.
T Consensus 100 GfSQGGlflRa~ierc~~~p~V~nlISlggph~ 132 (314)
T PLN02633 100 GRSQGNLVARGLIEFCDGGPPVYNYISLAGPHA 132 (314)
T ss_pred EEccchHHHHHHHHHCCCCCCcceEEEecCCCC
Confidence 999999999999999987 5999999998643
No 174
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=5.1e-05 Score=58.96 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=70.5
Q ss_pred CeEEEEccCCCchhh--HHHHHHHHhhC-CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhC--CceeEEEE
Q 048209 44 PVVLFIHGFPELWYS--WRNQLLYLSSR-GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLG--IHQVFLVG 118 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~--~~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvG 118 (349)
.|+|++||++.+... ...+.+.+.+. |..|+++|.- .| .... ......++++.+.+.+.... .+=++++|
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig-~g--~~~s--~l~pl~~Qv~~~ce~v~~m~~lsqGynivg 98 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIG-DG--IKDS--SLMPLWEQVDVACEKVKQMPELSQGYNIVG 98 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEec-CC--cchh--hhccHHHHHHHHHHHHhcchhccCceEEEE
Confidence 589999999987665 77777777765 8899999953 44 1111 23345566666655555432 12489999
Q ss_pred echHHHHHHHHHhhCcc-ccceeeeeccCCC
Q 048209 119 HDWGALIAWYFCLFRPD-RVKALVNMSVPFP 148 (349)
Q Consensus 119 ~S~Gg~ia~~~a~~~p~-~v~~lvl~~~~~~ 148 (349)
.|.||.++-.++...|+ .|+.+|.++++-.
T Consensus 99 ~SQGglv~Raliq~cd~ppV~n~ISL~gPha 129 (296)
T KOG2541|consen 99 YSQGGLVARALIQFCDNPPVKNFISLGGPHA 129 (296)
T ss_pred EccccHHHHHHHHhCCCCCcceeEeccCCcC
Confidence 99999999999887654 5899999887643
No 175
>COG3150 Predicted esterase [General function prediction only]
Probab=98.02 E-value=6.5e-05 Score=53.94 Aligned_cols=90 Identities=19% Similarity=0.322 Sum_probs=64.2
Q ss_pred EEEEccCCCchhhHHHHH--HHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHH
Q 048209 46 VLFIHGFPELWYSWRNQL--LYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGA 123 (349)
Q Consensus 46 iv~~hG~~~~~~~~~~~~--~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg 123 (349)
||.+||+-++....+... ..+.+. .|-.+.+.... .....+.++.++.++...+.+...++|.|+||
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~~--------~~~i~y~~p~l---~h~p~~a~~ele~~i~~~~~~~p~ivGssLGG 70 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDED--------VRDIEYSTPHL---PHDPQQALKELEKAVQELGDESPLIVGSSLGG 70 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhcc--------ccceeeecCCC---CCCHHHHHHHHHHHHHHcCCCCceEEeecchH
Confidence 799999988877765543 233332 22222332222 34678899999999999998889999999999
Q ss_pred HHHHHHHhhCccccceeeeeccCCCC
Q 048209 124 LIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 124 ~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
..|.+++.++. +++ |+++|...+
T Consensus 71 Y~At~l~~~~G--ira-v~~NPav~P 93 (191)
T COG3150 71 YYATWLGFLCG--IRA-VVFNPAVRP 93 (191)
T ss_pred HHHHHHHHHhC--Chh-hhcCCCcCc
Confidence 99999999875 444 456776654
No 176
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=98.02 E-value=5.8e-06 Score=65.64 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=56.9
Q ss_pred CeEEEEccCCCch---hhHHHHHHHHhhC--CceEEeeCCCCCCCC-CCCCCCCcchHHHHHHHHHHHHHHhC--CceeE
Q 048209 44 PVVLFIHGFPELW---YSWRNQLLYLSSR--GYRAIAPDLRGYGDT-DAPPSVTSYTALHLVGDLIGLLDKLG--IHQVF 115 (349)
Q Consensus 44 ~~iv~~hG~~~~~---~~~~~~~~~L~~~--G~~v~~~D~~G~G~s-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 115 (349)
.|||+.||+|.+. ..+..+...+.+. |..|.+++.- -+.+ +...+ -.....+.++.+.+.++... ..=++
T Consensus 6 ~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig-~~~~~D~~~s-~f~~v~~Qv~~vc~~l~~~p~L~~G~~ 83 (279)
T PF02089_consen 6 LPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIG-NDPSEDVENS-FFGNVNDQVEQVCEQLANDPELANGFN 83 (279)
T ss_dssp --EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SS-SSHHHHHHHH-HHSHHHHHHHHHHHHHHH-GGGTT-EE
T ss_pred CcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEEC-CCcchhhhhh-HHHHHHHHHHHHHHHHhhChhhhccee
Confidence 4899999999653 3455555544443 7778888863 2211 11110 11245666666666666532 13599
Q ss_pred EEEechHHHHHHHHHhhCcc-ccceeeeeccCCC
Q 048209 116 LVGHDWGALIAWYFCLFRPD-RVKALVNMSVPFP 148 (349)
Q Consensus 116 lvG~S~Gg~ia~~~a~~~p~-~v~~lvl~~~~~~ 148 (349)
++|+|.||.++-.++.+.|+ .|+.+|.++++-.
T Consensus 84 ~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph~ 117 (279)
T PF02089_consen 84 AIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPHM 117 (279)
T ss_dssp EEEETCHHHHHHHHHHH-TSS-EEEEEEES--TT
T ss_pred eeeeccccHHHHHHHHHCCCCCceeEEEecCccc
Confidence 99999999999999999865 5999999998643
No 177
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.01 E-value=7.2e-06 Score=55.65 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=52.8
Q ss_pred CCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHHh
Q 048209 282 EVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIKK 348 (349)
Q Consensus 282 ~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~~ 348 (349)
..|+|++.++.|+++|.+.+.. +++.+++. +++++++.||..+......+.+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~------~~~~l~~s-~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARA------MAARLPGS-RLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHH------HHHHCCCc-eEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 5999999999999999998877 78889998 999999999998866667888888898863
No 178
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.96 E-value=0.00024 Score=59.44 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=48.1
Q ss_pred ccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHH
Q 048209 280 QIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIK 347 (349)
Q Consensus 280 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~ 347 (349)
++++|.++|.|..|..+.+....-+ -..+|+.|.+..+|+++|.... ..+.+.+..|++
T Consensus 260 rL~~PK~ii~atgDeFf~pD~~~~y------~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~ 318 (367)
T PF10142_consen 260 RLTMPKYIINATGDEFFVPDSSNFY------YDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYN 318 (367)
T ss_pred hcCccEEEEecCCCceeccCchHHH------HhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHH
Confidence 6799999999999999999988764 4556666689999999998766 666666777765
No 179
>KOG3101 consensus Esterase D [General function prediction only]
Probab=97.85 E-value=2.9e-05 Score=57.98 Aligned_cols=109 Identities=25% Similarity=0.329 Sum_probs=70.8
Q ss_pred CCeEEEEccCCCchhhHHH---HHHHHhhCCceEEeeCC--CCC---CCCCCCC-------------CC--Ccch-HHHH
Q 048209 43 GPVVLFIHGFPELWYSWRN---QLLYLSSRGYRAIAPDL--RGY---GDTDAPP-------------SV--TSYT-ALHL 98 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~---~~~~L~~~G~~v~~~D~--~G~---G~s~~~~-------------~~--~~~~-~~~~ 98 (349)
-|++.++-|+.++.+.+.. +-..-.+.|+.|+.+|- ||. |+++.-+ ++ ..|. .+..
T Consensus 44 ~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv 123 (283)
T KOG3101|consen 44 CPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMYDYV 123 (283)
T ss_pred CceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHHHHH
Confidence 3789999999988776532 22344567999999984 443 2221100 00 0011 2223
Q ss_pred HHHHHHHHHHh----CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCC
Q 048209 99 VGDLIGLLDKL----GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRN 151 (349)
Q Consensus 99 ~~~~~~~~~~~----~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 151 (349)
++.+.+++..- ...++.+.||||||.=|+..+.+.|.+.+++-..+|...+..
T Consensus 124 ~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~ 180 (283)
T KOG3101|consen 124 VKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPIN 180 (283)
T ss_pred HHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCccc
Confidence 44555555422 233789999999999999999999999999988888766543
No 180
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.84 E-value=0.00025 Score=58.81 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=80.9
Q ss_pred eeEEEEeeCC----C-CeEEEEccCCCchhhHHHH---HHHHh-hCCceEEeeCCCCCCCCCCCCCC--------CcchH
Q 048209 33 INMHVASIGT----G-PVVLFIHGFPELWYSWRNQ---LLYLS-SRGYRAIAPDLRGYGDTDAPPSV--------TSYTA 95 (349)
Q Consensus 33 ~~~~~~~~g~----~-~~iv~~hG~~~~~~~~~~~---~~~L~-~~G~~v~~~D~~G~G~s~~~~~~--------~~~~~ 95 (349)
..++|..... + -||+|.-|.-++-+.+... ...++ +.+--++..++|-+|+|.+-.+. ...+.
T Consensus 65 F~qRylin~~fw~~g~gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLts 144 (492)
T KOG2183|consen 65 FDQRYLINDDFWKKGEGPIFFYTGNEGDIEWFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTS 144 (492)
T ss_pred eeeEEEEecccccCCCCceEEEeCCcccHHHHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhhhccccH
Confidence 4456665432 2 5788888887766654332 22222 22557888999999999754321 23356
Q ss_pred HHHHHHHHHHHHHhCC------ceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 96 LHLVGDLIGLLDKLGI------HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~------~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
++...|...++..++. .+|+++|.|+|||+|..+=.+||..+.|....++|.
T Consensus 145 eQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 145 EQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPV 202 (492)
T ss_pred HHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCce
Confidence 7777787777777742 389999999999999999999999888887766654
No 181
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00074 Score=59.62 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=81.7
Q ss_pred eCCeeEE----EEee----CCCCeEEEEccCCCchh--hHHHHHHHHhhCCceEEeeCCCCCCCCCCCC------CCCcc
Q 048209 30 TNGINMH----VASI----GTGPVVLFIHGFPELWY--SWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP------SVTSY 93 (349)
Q Consensus 30 ~~g~~~~----~~~~----g~~~~iv~~hG~~~~~~--~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~------~~~~~ 93 (349)
.+|.++. |+.. |++|.+|..-|.-+.+. .|....-.|..+||--.....||=|.=...- .....
T Consensus 427 ~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~N 506 (682)
T COG1770 427 DDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKN 506 (682)
T ss_pred CCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccc
Confidence 3676654 4422 44677777777544332 2333334566779877777788866553321 11345
Q ss_pred hHHHHHHHHHHHHHHh--CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 94 TALHLVGDLIGLLDKL--GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
++.|+++....+++.- ..+.++++|.|.||+++-..+...|+.++++|+--|.++.
T Consensus 507 Tf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDv 564 (682)
T COG1770 507 TFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDV 564 (682)
T ss_pred cHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccch
Confidence 7888888777777543 2347999999999999999999999999999988876654
No 182
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.79 E-value=0.00028 Score=58.43 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=47.8
Q ss_pred ccC-CcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhc-H--HHHHHHHHHHHHhC
Q 048209 280 QIE-VPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEK-A--EEVGAHIYEFIKKF 349 (349)
Q Consensus 280 ~i~-~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~-~--~~~~~~i~~fl~~~ 349 (349)
.+. +|+|+++|..|..+|.....+.+.. .... .. +...+++++|...... + ++..+.+.+|+.++
T Consensus 229 ~i~~~P~l~~~G~~D~~vp~~~~~~~~~~--~~~~--~~-~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 229 KISPRPVLLVHGERDEVVPLRDAEDLYEA--ARER--PK-KLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred hcCCcceEEEecCCCcccchhhhHHHHhh--hccC--Cc-eEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 444 7999999999999999888875421 1111 33 7778888999887543 3 37888999998763
No 183
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00034 Score=52.46 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=65.5
Q ss_pred CCeEEEEccCCC-chhhHH---------------HHHHHHhhCCceEEeeCCCC---CCCCCCCCCCCcchHHHHHH-HH
Q 048209 43 GPVVLFIHGFPE-LWYSWR---------------NQLLYLSSRGYRAIAPDLRG---YGDTDAPPSVTSYTALHLVG-DL 102 (349)
Q Consensus 43 ~~~iv~~hG~~~-~~~~~~---------------~~~~~L~~~G~~v~~~D~~G---~G~s~~~~~~~~~~~~~~~~-~~ 102 (349)
...+|++||.|. .+..|. ++++.-.+.||.|++.+.-- +-.+...+-....+..+.+. -.
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw 180 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVW 180 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHH
Confidence 458999999874 344453 23445556699999987531 11111111001112222222 22
Q ss_pred HHHHHHhCCceeEEEEechHHHHHHHHHhhCcc--ccceeeeeccCCC
Q 048209 103 IGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPD--RVKALVNMSVPFP 148 (349)
Q Consensus 103 ~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~ 148 (349)
..++.-...+.+.++.||.||...+.+..++|+ +|.++.+.+++..
T Consensus 181 ~~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~~~ 228 (297)
T KOG3967|consen 181 KNIVLPAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSAMG 228 (297)
T ss_pred HHHhcccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccccc
Confidence 344444466789999999999999999999875 6888888887643
No 184
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=97.75 E-value=4.8e-05 Score=64.18 Aligned_cols=89 Identities=21% Similarity=0.339 Sum_probs=61.6
Q ss_pred hhHHHHHHHHhhCCce------EEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHH
Q 048209 57 YSWRNQLLYLSSRGYR------AIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFC 130 (349)
Q Consensus 57 ~~~~~~~~~L~~~G~~------v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a 130 (349)
..|..+++.|..-||. -..+|+| .|.......+..+..+..-++...+.-|.+|++|++|||||.+.+.+.
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwR---ls~~~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl 200 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWR---LSYHNSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFL 200 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchh---hccCChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHH
Confidence 4788899999988887 4567888 333222212333444444444444444778999999999999999999
Q ss_pred hhCcc--------ccceeeeeccCCC
Q 048209 131 LFRPD--------RVKALVNMSVPFP 148 (349)
Q Consensus 131 ~~~p~--------~v~~lvl~~~~~~ 148 (349)
...++ .|++.|.++++..
T Consensus 201 ~w~~~~~~~W~~k~I~sfvnig~p~l 226 (473)
T KOG2369|consen 201 KWVEAEGPAWCDKYIKSFVNIGAPWL 226 (473)
T ss_pred hcccccchhHHHHHHHHHHccCchhc
Confidence 88776 3788887777543
No 185
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=97.75 E-value=9.7e-05 Score=62.94 Aligned_cols=119 Identities=17% Similarity=0.144 Sum_probs=73.9
Q ss_pred eCCeeEEEEeeC-C---CCeEEEEccCC---CchhhHHHHHHHHhhCC-ceEEeeCCC-C-CCCCC---C---CCCCCcc
Q 048209 30 TNGINMHVASIG-T---GPVVLFIHGFP---ELWYSWRNQLLYLSSRG-YRAIAPDLR-G-YGDTD---A---PPSVTSY 93 (349)
Q Consensus 30 ~~g~~~~~~~~g-~---~~~iv~~hG~~---~~~~~~~~~~~~L~~~G-~~v~~~D~~-G-~G~s~---~---~~~~~~~ 93 (349)
-|...+..+.-. + .|++|+|||.+ ++......-...|+++| +-|+++++| | .|.=+ - .......
T Consensus 77 EDCL~LNIwaP~~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~ 156 (491)
T COG2272 77 EDCLYLNIWAPEVPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNL 156 (491)
T ss_pred ccceeEEeeccCCCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccccccccc
Confidence 345556655443 2 59999999974 33333233346788887 889999887 1 11111 0 0100123
Q ss_pred hHHHHH---HHHHHHHHHhCCc--eeEEEEechHHHHHHHHHhh--CccccceeeeeccCCC
Q 048209 94 TALHLV---GDLIGLLDKLGIH--QVFLVGHDWGALIAWYFCLF--RPDRVKALVNMSVPFP 148 (349)
Q Consensus 94 ~~~~~~---~~~~~~~~~~~~~--~~~lvG~S~Gg~ia~~~a~~--~p~~v~~lvl~~~~~~ 148 (349)
.+.|++ +.+.+-++++|-+ .|.|+|+|.||+.++.+.+. ....+.++|+.++...
T Consensus 157 Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 157 GLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 444443 4556666777654 79999999999977766653 2345888899888765
No 186
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.74 E-value=0.00011 Score=64.15 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=56.4
Q ss_pred hhHHHHHHHHhhCCce-----EEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh----CCceeEEEEechHHHHHH
Q 048209 57 YSWRNQLLYLSSRGYR-----AIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL----GIHQVFLVGHDWGALIAW 127 (349)
Q Consensus 57 ~~~~~~~~~L~~~G~~-----v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvG~S~Gg~ia~ 127 (349)
..|..+++.|.+.||. ...+|+| .+... ...-+++...+...++.. +.++++|+||||||.+++
T Consensus 156 ~vw~kLIe~L~~iGY~~~nL~gAPYDWR---ls~~~----le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~l 228 (642)
T PLN02517 156 FVWAVLIANLARIGYEEKNMYMAAYDWR---LSFQN----TEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFL 228 (642)
T ss_pred eeHHHHHHHHHHcCCCCCceeecccccc---cCccc----hhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHH
Confidence 3679999999999986 3344555 11111 112234444555555433 457999999999999999
Q ss_pred HHHhhC-----------c----cccceeeeeccCCCC
Q 048209 128 YFCLFR-----------P----DRVKALVNMSVPFPP 149 (349)
Q Consensus 128 ~~a~~~-----------p----~~v~~lvl~~~~~~~ 149 (349)
.+...- + ..|++.|.++++...
T Consensus 229 yFL~wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp~lG 265 (642)
T PLN02517 229 HFMKWVEAPAPMGGGGGPGWCAKHIKAVMNIGGPFLG 265 (642)
T ss_pred HHHHhccccccccCCcchHHHHHHHHHheecccccCC
Confidence 877632 1 248999999987543
No 187
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=97.74 E-value=0.0054 Score=51.29 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=47.8
Q ss_pred CCcEEEEEecCCccccCCcchhhhcccc------------------cccccCC-ceeEEEecCCCcccchhcHHHHHHHH
Q 048209 282 EVPVKFIVGDQDLVYNNKGMKEYIHDGG------------------FKKYVPY-LQEVVVMEGVAHFINQEKAEEVGAHI 342 (349)
Q Consensus 282 ~~Pvl~i~G~~D~~~~~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~~gH~~~~e~~~~~~~~i 342 (349)
.++||+..|..|.+|+....+.+...-. ..+...+ . .+..+.+|||++. .+|+...+.+
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~l-tf~~V~~AGHmV~-~qP~~al~m~ 310 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKM-TFATIKAGGHTAE-YRPNETFIMF 310 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcc-eEEEEcCCCCCCC-cCHHHHHHHH
Confidence 4899999999999998766655543321 1112222 4 6677789999996 5999999999
Q ss_pred HHHHHh
Q 048209 343 YEFIKK 348 (349)
Q Consensus 343 ~~fl~~ 348 (349)
..||+.
T Consensus 311 ~~fi~~ 316 (319)
T PLN02213 311 QRWISG 316 (319)
T ss_pred HHHHcC
Confidence 999964
No 188
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=97.68 E-value=0.00017 Score=49.28 Aligned_cols=51 Identities=20% Similarity=0.492 Sum_probs=36.1
Q ss_pred hhhhhHhhhcccceEEEeeCCeeEEEEeeCC----CCeEEEEccCCCchhhHHHH
Q 048209 12 TKRKHKQTMEKIEHTTVGTNGINMHVASIGT----GPVVLFIHGFPELWYSWRNQ 62 (349)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~----~~~iv~~hG~~~~~~~~~~~ 62 (349)
..+..+..++......++++|.+|++....+ ..||||+|||+++-..|..+
T Consensus 57 DWr~~E~~lN~~phf~t~I~g~~iHFih~rs~~~~aiPLll~HGWPgSf~Ef~~v 111 (112)
T PF06441_consen 57 DWRKHEARLNSFPHFKTEIDGLDIHFIHVRSKRPNAIPLLLLHGWPGSFLEFLKV 111 (112)
T ss_dssp -HHHHHHHHTTS-EEEEEETTEEEEEEEE--S-TT-EEEEEE--SS--GGGGHHH
T ss_pred ChHHHHHHHHcCCCeeEEEeeEEEEEEEeeCCCCCCeEEEEECCCCccHHhHHhh
Confidence 3566778899999999999999999997764 46999999999998777654
No 189
>COG0627 Predicted esterase [General function prediction only]
Probab=97.67 E-value=0.00021 Score=58.79 Aligned_cols=110 Identities=21% Similarity=0.268 Sum_probs=69.8
Q ss_pred CCeEEEEccCCCchhhH---HHHHHHHhhCCceEEeeCC--------------CCCCCCCCCC------CCCcchHHHH-
Q 048209 43 GPVVLFIHGFPELWYSW---RNQLLYLSSRGYRAIAPDL--------------RGYGDTDAPP------SVTSYTALHL- 98 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~---~~~~~~L~~~G~~v~~~D~--------------~G~G~s~~~~------~~~~~~~~~~- 98 (349)
-|+++++||..++...+ ..+-+...+.|+.+++.|- .|-+.|--.+ ....+.++++
T Consensus 54 ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~tfl 133 (316)
T COG0627 54 IPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWETFL 133 (316)
T ss_pred CCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhHHH
Confidence 37888889988775332 2233444555777777632 2333321111 0012445544
Q ss_pred HHHHHHHHHH-hCC----ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCCCCC
Q 048209 99 VGDLIGLLDK-LGI----HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNP 152 (349)
Q Consensus 99 ~~~~~~~~~~-~~~----~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 152 (349)
.+++-..+++ ... .+..++||||||.=|+.+|.++|++++.+..+++...+...
T Consensus 134 ~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~ 192 (316)
T COG0627 134 TQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSP 192 (316)
T ss_pred HhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccccc
Confidence 3456644443 331 26889999999999999999999999999999998876543
No 190
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=97.64 E-value=0.0014 Score=51.09 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=58.8
Q ss_pred eEEEEccC--CC-chhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHH----HHHHHHHHh----CC--
Q 048209 45 VVLFIHGF--PE-LWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVG----DLIGLLDKL----GI-- 111 (349)
Q Consensus 45 ~iv~~hG~--~~-~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~----~~~~~~~~~----~~-- 111 (349)
.|-|+-|. |. ..-.|+.+.+.|+++||.|++.-+.- ..+-...++ .....++.+ +.
T Consensus 19 vihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~-----------tfDH~~~A~~~~~~f~~~~~~L~~~~~~~~ 87 (250)
T PF07082_consen 19 VIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVV-----------TFDHQAIAREVWERFERCLRALQKRGGLDP 87 (250)
T ss_pred EEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCC-----------CCcHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 56666664 22 23458999999999999999987751 112222222 222222222 22
Q ss_pred --ceeEEEEechHHHHHHHHHhhCccccceeeeeccC
Q 048209 112 --HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVP 146 (349)
Q Consensus 112 --~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 146 (349)
-+++-+|||+|+-+-+.+...++..-++.|+++-.
T Consensus 88 ~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSFN 124 (250)
T PF07082_consen 88 AYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISFN 124 (250)
T ss_pred ccCCeeeeecccchHHHHHHhhhccCcccceEEEecC
Confidence 26788999999999888888876666777777743
No 191
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=97.61 E-value=0.00022 Score=64.59 Aligned_cols=105 Identities=19% Similarity=0.116 Sum_probs=60.2
Q ss_pred CeEEEEccCC---Cchh-hHHHHHHHHhhCCceEEeeCCC----CCCCCCCCCCC-CcchHHHHHHHHHHHHH---HhCC
Q 048209 44 PVVLFIHGFP---ELWY-SWRNQLLYLSSRGYRAIAPDLR----GYGDTDAPPSV-TSYTALHLVGDLIGLLD---KLGI 111 (349)
Q Consensus 44 ~~iv~~hG~~---~~~~-~~~~~~~~L~~~G~~v~~~D~~----G~G~s~~~~~~-~~~~~~~~~~~~~~~~~---~~~~ 111 (349)
|++|++||.+ ++.. ....-...+.+++.-|+++++| |+-.+...... ..+.+.|+...++=+-+ .+|.
T Consensus 126 PV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGG 205 (535)
T PF00135_consen 126 PVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAAFGG 205 (535)
T ss_dssp EEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGGGTE
T ss_pred ceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccCchhhhhhhhHHHHHHHHhhhhhccc
Confidence 8999999975 2331 2222334455668999999998 44333222221 45566666655544444 4444
Q ss_pred --ceeEEEEechHHHHHHHHHhh--CccccceeeeeccCCC
Q 048209 112 --HQVFLVGHDWGALIAWYFCLF--RPDRVKALVNMSVPFP 148 (349)
Q Consensus 112 --~~~~lvG~S~Gg~ia~~~a~~--~p~~v~~lvl~~~~~~ 148 (349)
++|.|+|||.||..+...+.. ....+.++|+.++...
T Consensus 206 Dp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~ 246 (535)
T PF00135_consen 206 DPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSAL 246 (535)
T ss_dssp EEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TT
T ss_pred CCcceeeeeecccccccceeeeccccccccccccccccccc
Confidence 379999999999876655554 2246999999998544
No 192
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=97.60 E-value=0.0031 Score=49.96 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=75.6
Q ss_pred CCeEEEEccCCCchh-hHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEech
Q 048209 43 GPVVLFIHGFPELWY-SWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDW 121 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~-~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~ 121 (349)
.|.|+++-.+.++.. ..+..++.|... ..|+.-|+-.--.-.- ....++.+|+++-+.+.+..+|.+ +++++.|.
T Consensus 103 dPkvLivapmsGH~aTLLR~TV~alLp~-~~vyitDW~dAr~Vp~--~~G~FdldDYIdyvie~~~~~Gp~-~hv~aVCQ 178 (415)
T COG4553 103 DPKVLIVAPMSGHYATLLRGTVEALLPY-HDVYITDWVDARMVPL--EAGHFDLDDYIDYVIEMINFLGPD-AHVMAVCQ 178 (415)
T ss_pred CCeEEEEecccccHHHHHHHHHHHhccc-cceeEeeccccceeec--ccCCccHHHHHHHHHHHHHHhCCC-CcEEEEec
Confidence 357888877776654 467778887775 7899999864322222 225778999999999999999965 88899887
Q ss_pred HHH-----HHHHHHhhCccccceeeeeccCCCCC
Q 048209 122 GAL-----IAWYFCLFRPDRVKALVNMSVPFPPR 150 (349)
Q Consensus 122 Gg~-----ia~~~a~~~p~~v~~lvl~~~~~~~~ 150 (349)
-+. +++..+...|..-.+.++++++.+..
T Consensus 179 P~vPvLAAisLM~~~~~p~~PssMtlmGgPIDaR 212 (415)
T COG4553 179 PTVPVLAAISLMEEDGDPNVPSSMTLMGGPIDAR 212 (415)
T ss_pred CCchHHHHHHHHHhcCCCCCCceeeeecCccccc
Confidence 764 34444445677789999999987754
No 193
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.55 E-value=0.00025 Score=52.42 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHh----CCceeEEEEechHHHHHHHHHhhCcc----ccceeeeeccCCCC
Q 048209 98 LVGDLIGLLDKL----GIHQVFLVGHDWGALIAWYFCLFRPD----RVKALVNMSVPFPP 149 (349)
Q Consensus 98 ~~~~~~~~~~~~----~~~~~~lvG~S~Gg~ia~~~a~~~p~----~v~~lvl~~~~~~~ 149 (349)
+...+...++.. +..+++++|||+||.+|..++..... .+..++.++++...
T Consensus 10 ~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~~~ 69 (153)
T cd00741 10 LANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVG 69 (153)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCccc
Confidence 334444444333 56799999999999999999887654 56777777776543
No 194
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00032 Score=61.07 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=76.5
Q ss_pred EeeCCeeEEEEeeCC------CCeEEEEccCCCch--hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCC------CCCcc
Q 048209 28 VGTNGINMHVASIGT------GPVVLFIHGFPELW--YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP------SVTSY 93 (349)
Q Consensus 28 ~~~~g~~~~~~~~g~------~~~iv~~hG~~~~~--~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~------~~~~~ 93 (349)
.+-||.+|.|...++ .|++|+--|.-.-+ -.|........++|...+.-+.||=|.=...- .....
T Consensus 400 tSkDGT~IPYFiv~K~~~~d~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~ 479 (648)
T COG1505 400 TSKDGTRIPYFIVRKGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQN 479 (648)
T ss_pred EcCCCccccEEEEecCCcCCCCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchh
Confidence 444899999998741 46666555432211 23455556666778888888999977654311 11222
Q ss_pred hHHHHHHHHHHHHHHhCC---ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 94 TALHLVGDLIGLLDKLGI---HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~---~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
.++|++.-...+++. |+ +++.+.|.|-||.+.-.+...+|+.+.++|+--|..+
T Consensus 480 vfdDf~AVaedLi~r-gitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllD 536 (648)
T COG1505 480 VFDDFIAVAEDLIKR-GITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLD 536 (648)
T ss_pred hhHHHHHHHHHHHHh-CCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhh
Confidence 344444444444332 33 4789999999999988888899998888876555443
No 195
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.51 E-value=0.00063 Score=57.98 Aligned_cols=107 Identities=19% Similarity=0.291 Sum_probs=80.3
Q ss_pred CCeEEEEccCCCchhhHH-----HHHHHHhhCCceEEeeCCCCCCCCCCCCC-----CCcchHHHHHHHHHHHHHHhCC-
Q 048209 43 GPVVLFIHGFPELWYSWR-----NQLLYLSSRGYRAIAPDLRGYGDTDAPPS-----VTSYTALHLVGDLIGLLDKLGI- 111 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~-----~~~~~L~~~G~~v~~~D~~G~G~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~- 111 (349)
+|.-|+|-|=+.-...|. .+...-.+.|-.|+.+++|-+|.|.+..+ ....+..+...|+..+++++..
T Consensus 86 gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k 165 (514)
T KOG2182|consen 86 GPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAK 165 (514)
T ss_pred CceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 677788877654443341 12223334488999999999998865442 2345778889999999988832
Q ss_pred ------ceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 112 ------HQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 112 ------~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
.+++..|.|+-|.++..+=.++|+.+.|.|..++++..
T Consensus 166 ~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~A 209 (514)
T KOG2182|consen 166 FNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVLA 209 (514)
T ss_pred cCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccceeE
Confidence 28999999999999999999999999999988877654
No 196
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.44 E-value=0.00043 Score=50.26 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhC
Q 048209 97 HLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
...+.+..+++..+..++++.|||+||.+|..++...
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhh
Confidence 4455666666665667899999999999999888763
No 197
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.00059 Score=56.50 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=62.9
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh----CCceeEEEEec
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL----GIHQVFLVGHD 120 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvG~S 120 (349)
..||+-|=|+-.+.=+.+...|+++|+.|+.+|-.-+=.|.+ +.++.++|+..+++.. +.+++.|+|+|
T Consensus 262 ~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRYfW~~r-------tPe~~a~Dl~r~i~~y~~~w~~~~~~liGyS 334 (456)
T COG3946 262 VAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRYFWSER-------TPEQIAADLSRLIRFYARRWGAKRVLLIGYS 334 (456)
T ss_pred EEEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhhhhccC-------CHHHHHHHHHHHHHHHHHhhCcceEEEEeec
Confidence 566677766666666778899999999999999654444433 5677888888887765 66799999999
Q ss_pred hHHHHHHHHHhhCcc
Q 048209 121 WGALIAWYFCLFRPD 135 (349)
Q Consensus 121 ~Gg~ia~~~a~~~p~ 135 (349)
+|+-+.-..-.+-|.
T Consensus 335 fGADvlP~~~n~L~~ 349 (456)
T COG3946 335 FGADVLPFAYNRLPP 349 (456)
T ss_pred ccchhhHHHHHhCCH
Confidence 999876665555553
No 198
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.42 E-value=0.0018 Score=54.36 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=31.8
Q ss_pred eeEEEEechHHHHHHHHHhhCccccceeeeeccCCC
Q 048209 113 QVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 113 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
+++++|+|.||.+|..+|.-.|..++++|=-++...
T Consensus 185 p~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 185 PKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred cEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 899999999999999999999999999887666544
No 199
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0035 Score=55.26 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=78.1
Q ss_pred EeeCCeeEEEEee--------CCCCeEEEEccCCCch-h-hHHHHHHHHhhCCceEEeeCCCCCCCCCCCC------CCC
Q 048209 28 VGTNGINMHVASI--------GTGPVVLFIHGFPELW-Y-SWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP------SVT 91 (349)
Q Consensus 28 ~~~~g~~~~~~~~--------g~~~~iv~~hG~~~~~-~-~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~------~~~ 91 (349)
..-||..+.-.+. |++|.+|..+|.-+-+ . .|..--..|...|+.....|.||=|.-...- ...
T Consensus 447 ~SkDGt~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakK 526 (712)
T KOG2237|consen 447 SSKDGTKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKK 526 (712)
T ss_pred ecCCCCccceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhh
Confidence 3347766543321 3467777666643322 1 2433333455679888888999977654221 112
Q ss_pred cchHHHHHHHHHHHHHHh--CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 92 SYTALHLVGDLIGLLDKL--GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
..+++|+....+-+++.- ..++..+.|.|-||.++..++..+|+.+.++|+--|..+.
T Consensus 527 qN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDv 586 (712)
T KOG2237|consen 527 QNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDV 586 (712)
T ss_pred cccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceeh
Confidence 345666666665555432 2347899999999999999999999999998877765554
No 200
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.29 E-value=0.007 Score=45.29 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhC-----CceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 95 ALHLVGDLIGLLDKLG-----IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 95 ~~~~~~~~~~~~~~~~-----~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
-+.-+.+|..+++.+. ..++.++|||+|+.++-..+...+..++.+|+++++...
T Consensus 87 A~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~g 146 (177)
T PF06259_consen 87 ARAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGMG 146 (177)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCCCC
Confidence 3455666777766662 237899999999999988888767789999999987543
No 201
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.002 Score=51.68 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=33.1
Q ss_pred eeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 113 QVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 113 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
.-+|.|-|+||.+++..+..+|+.+-.++..++.+..
T Consensus 178 ~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~ 214 (299)
T COG2382 178 GRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWW 214 (299)
T ss_pred CcEEeccccccHHHHHHHhcCchhhceeeccCCcccc
Confidence 5789999999999999999999999999988886554
No 202
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=97.14 E-value=0.011 Score=46.45 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhC----ccccceeeeeccCCCC
Q 048209 98 LVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFR----PDRVKALVNMSVPFPP 149 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~----p~~v~~lvl~~~~~~~ 149 (349)
.++-+..+++..+. ++.+.|||.||.+|..++... .++|.++...++|...
T Consensus 71 A~~yl~~~~~~~~~-~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPGf~ 125 (224)
T PF11187_consen 71 ALAYLKKIAKKYPG-KIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPGFS 125 (224)
T ss_pred HHHHHHHHHHhCCC-CEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCCCC
Confidence 34445555555543 599999999999999998874 3578899988887654
No 203
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0043 Score=53.38 Aligned_cols=107 Identities=17% Similarity=0.083 Sum_probs=72.0
Q ss_pred CCeEEEEccCCCchhhHHHHHH----H---------------HhhCCceEEeeC-CCCCCCCCCCCCCCcchHHHHHHHH
Q 048209 43 GPVVLFIHGFPELWYSWRNQLL----Y---------------LSSRGYRAIAPD-LRGYGDTDAPPSVTSYTALHLVGDL 102 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~----~---------------L~~~G~~v~~~D-~~G~G~s~~~~~~~~~~~~~~~~~~ 102 (349)
.|.|+++.|.++++..|-.+.+ . +... -.++-+| .-|.|.|....+....+.....+|+
T Consensus 101 rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a~~~e~~~d~~~~~~D~ 179 (498)
T COG2939 101 RPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRALGDEKKKDFEGAGKDV 179 (498)
T ss_pred CceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccccccccccchhccchhH
Confidence 6899999999999999876642 0 1111 3688999 5699999863322344555555666
Q ss_pred HHHHHHh-------C--CceeEEEEechHHHHHHHHHhhCcc---ccceeeeeccCCCCC
Q 048209 103 IGLLDKL-------G--IHQVFLVGHDWGALIAWYFCLFRPD---RVKALVNMSVPFPPR 150 (349)
Q Consensus 103 ~~~~~~~-------~--~~~~~lvG~S~Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~~ 150 (349)
..+.+.+ . ..+.+|+|-|+||.-+-.+|..--+ ..+++|++.+.....
T Consensus 180 ~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvlign 239 (498)
T COG2939 180 YSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLIGN 239 (498)
T ss_pred HHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeeeecC
Confidence 5555443 2 2489999999999977777765333 367777777755443
No 204
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.79 E-value=0.0033 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.276 Sum_probs=20.3
Q ss_pred CCceeEEEEechHHHHHHHHHhhC
Q 048209 110 GIHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 110 ~~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
...++++.|||+||.+|..++...
T Consensus 126 p~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 126 PDYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred CCceEEEEccCHHHHHHHHHHHHH
Confidence 456899999999999999888753
No 205
>PLN02162 triacylglycerol lipase
Probab=96.71 E-value=0.005 Score=52.74 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHh
Q 048209 96 LHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCL 131 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~ 131 (349)
.++.+.+.+.+......++++.|||+||.+|..+|.
T Consensus 262 ~~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 262 YTIRQMLRDKLARNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHH
Confidence 344555666666656568999999999999998765
No 206
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=96.71 E-value=0.0036 Score=52.43 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=80.4
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCC-CCCcchHHHHHHHHHHHHHHhC---CceeEEEE
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP-SVTSYTALHLVGDLIGLLDKLG---IHQVFLVG 118 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~lvG 118 (349)
.|+|+..-|++.+..-.+.-...|.. -+-+.+++|-+|.|.+.+ +....++++-+.|.+.+++.+. ..+++--|
T Consensus 63 rPtV~~T~GY~~~~~p~r~Ept~Lld--~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~iY~~kWISTG 140 (448)
T PF05576_consen 63 RPTVLYTEGYNVSTSPRRSEPTQLLD--GNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPIYPGKWISTG 140 (448)
T ss_pred CCeEEEecCcccccCccccchhHhhc--cceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhhccCCceecC
Confidence 57777778887654333222223332 377999999999998765 3345689999999999988873 34889999
Q ss_pred echHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 119 HDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 119 ~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
.|-||+.++.+=..||+.|++.|.--++.+.
T Consensus 141 ~SKGGmTa~y~rrFyP~DVD~tVaYVAP~~~ 171 (448)
T PF05576_consen 141 GSKGGMTAVYYRRFYPDDVDGTVAYVAPNDV 171 (448)
T ss_pred cCCCceeEEEEeeeCCCCCCeeeeeeccccc
Confidence 9999999999999999999999987777654
No 207
>PLN00413 triacylglycerol lipase
Probab=96.67 E-value=0.0058 Score=52.51 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhh---C-----ccccceeeeeccC
Q 048209 96 LHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLF---R-----PDRVKALVNMSVP 146 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~---~-----p~~v~~lvl~~~~ 146 (349)
.++.+.+..+++.....++++.|||+||.+|..+|.. + ..++.++...++|
T Consensus 268 y~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~~L~~~~~~~~~~ri~~VYTFG~P 326 (479)
T PLN00413 268 YTILRHLKEIFDQNPTSKFILSGHSLGGALAILFTAVLIMHDEEEMLERLEGVYTFGQP 326 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHHHHHhccchhhccccceEEEeCCC
Confidence 3556677777777776789999999999999988752 1 1234456666654
No 208
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=96.65 E-value=0.0037 Score=49.38 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 110 GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 110 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
..++-.++|||+||.+++.....+|+.+...++++|....
T Consensus 135 ~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw 174 (264)
T COG2819 135 NSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWW 174 (264)
T ss_pred CcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhh
Confidence 3457899999999999999999999999999999987654
No 209
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=96.48 E-value=0.0099 Score=44.98 Aligned_cols=53 Identities=21% Similarity=0.140 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhh------CccccceeeeeccCCCC
Q 048209 97 HLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLF------RPDRVKALVNMSVPFPP 149 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~------~p~~v~~lvl~~~~~~~ 149 (349)
+..+.+.+....-...+++|+|+|+|+.++..++.. ..++|.++|+++-+...
T Consensus 66 ~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~~ 124 (179)
T PF01083_consen 66 NLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRRG 124 (179)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTTB
T ss_pred HHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCCccc
Confidence 344444444444466799999999999999988776 33579999999977654
No 210
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=96.18 E-value=0.022 Score=51.82 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=61.3
Q ss_pred CCeEEEEccCCC---chhhHH--HHHHHHhhCCceEEeeCCC----CCCCCCCCCCCCcchHHHHHHHHHHHHH---HhC
Q 048209 43 GPVVLFIHGFPE---LWYSWR--NQLLYLSSRGYRAIAPDLR----GYGDTDAPPSVTSYTALHLVGDLIGLLD---KLG 110 (349)
Q Consensus 43 ~~~iv~~hG~~~---~~~~~~--~~~~~L~~~G~~v~~~D~~----G~G~s~~~~~~~~~~~~~~~~~~~~~~~---~~~ 110 (349)
-|++|++||.+. +...+. .....+.....-|+.+.+| |+........+..+.+.|++..+.-+-+ ..|
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FG 191 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFG 191 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 489999999863 322231 1122233334667777776 3322221111245566666655544444 444
Q ss_pred --CceeEEEEechHHHHHHHHHhh--CccccceeeeeccCCC
Q 048209 111 --IHQVFLVGHDWGALIAWYFCLF--RPDRVKALVNMSVPFP 148 (349)
Q Consensus 111 --~~~~~lvG~S~Gg~ia~~~a~~--~p~~v~~lvl~~~~~~ 148 (349)
.++|.++|||.||..+..+... ....+.++|.+++...
T Consensus 192 Gdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~~ 233 (545)
T KOG1516|consen 192 GDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNAL 233 (545)
T ss_pred CCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccccc
Confidence 3589999999999988666553 2245777777776544
No 211
>PLN02571 triacylglycerol lipase
Probab=96.17 E-value=0.0091 Score=50.74 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCc--eeEEEEechHHHHHHHHHhh
Q 048209 96 LHLVGDLIGLLDKLGIH--QVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~--~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+++..++..+++..... ++++.|||+||.+|...|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 45566777777665433 68999999999999998874
No 212
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.11 Score=43.49 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=49.5
Q ss_pred CCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchh-cHHHHHHHHHHHHHh
Q 048209 282 EVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQE-KAEEVGAHIYEFIKK 348 (349)
Q Consensus 282 ~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e-~~~~~~~~i~~fl~~ 348 (349)
..+.+.+.+..|.++|.....++.+. ..+..-++ +.+-+.++-|..+.. .|..+.+.+.+|+++
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~--~~~~g~~v-~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~ 289 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIAL--RREKGVNV-KSVKFKDSEHVAHFRSFPKTYLKKCSEFLRS 289 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHH--HHhcCceE-EEeeccCccceeeeccCcHHHHHHHHHHHHh
Confidence 57889999999999999888776421 33444455 666677889988665 799999999999975
No 213
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=96.15 E-value=0.012 Score=35.44 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=22.5
Q ss_pred cceEEEeeCCeeEEEEeeC----------CCCeEEEEccCCCchhhH
Q 048209 23 IEHTTVGTNGINMHVASIG----------TGPVVLFIHGFPELWYSW 59 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g----------~~~~iv~~hG~~~~~~~~ 59 (349)
.+..+.+.||+-+...+.. .+|+|++.||+.+++..|
T Consensus 13 E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 13 EEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGG
T ss_pred EEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHH
Confidence 3556677799988777542 157999999999999887
No 214
>PLN02454 triacylglycerol lipase
Probab=96.15 E-value=0.01 Score=50.36 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCc--eeEEEEechHHHHHHHHHhh
Q 048209 99 VGDLIGLLDKLGIH--QVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 99 ~~~~~~~~~~~~~~--~~~lvG~S~Gg~ia~~~a~~ 132 (349)
...+..+++..... ++++.|||+||.+|+.+|..
T Consensus 213 l~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 213 LAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 34444555444333 49999999999999998864
No 215
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=96.12 E-value=0.014 Score=44.70 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHhCC-ceeEEEEechHHHHHHHHHhhC
Q 048209 94 TALHLVGDLIGLLDKLGI-HQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
...|..+.....+++.+. ++++|+|||.|+.+..++...+
T Consensus 76 ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 76 AYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 455566666777777643 5899999999999999998864
No 216
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=95.88 E-value=0.093 Score=43.46 Aligned_cols=48 Identities=8% Similarity=0.163 Sum_probs=40.5
Q ss_pred ccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchh
Q 048209 280 QIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQE 333 (349)
Q Consensus 280 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e 333 (349)
.+..|-.++.|+.|..++++.+.- .-+.+|+.|.+..+|++.|.....
T Consensus 327 RLalpKyivnaSgDdff~pDsa~l------Yyd~LPG~kaLrmvPN~~H~~~n~ 374 (507)
T COG4287 327 RLALPKYIVNASGDDFFVPDSANL------YYDDLPGEKALRMVPNDPHNLINQ 374 (507)
T ss_pred hccccceeecccCCcccCCCccce------eeccCCCceeeeeCCCCcchhhHH
Confidence 678999999999999999888765 457789887899999999986543
No 217
>PLN02310 triacylglycerol lipase
Probab=95.82 E-value=0.028 Score=47.77 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhC----CceeEEEEechHHHHHHHHHhh
Q 048209 96 LHLVGDLIGLLDKLG----IHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~----~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
++..+.+..+++... ..++++.|||+||.+|...|..
T Consensus 189 ~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 189 EQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHH
Confidence 345566677766553 1379999999999999988854
No 218
>PLN02408 phospholipase A1
Probab=95.82 E-value=0.016 Score=48.51 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhCCc--eeEEEEechHHHHHHHHHhhC
Q 048209 98 LVGDLIGLLDKLGIH--QVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~--~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
..+.+..+++..+.. ++++.|||+||.+|..+|...
T Consensus 184 Vl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 184 VREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHH
Confidence 445566666655433 589999999999999888753
No 219
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=95.78 E-value=0.018 Score=47.97 Aligned_cols=40 Identities=38% Similarity=0.581 Sum_probs=32.1
Q ss_pred CCceeEEEEechHHHHHHHHHhhCcc-----ccceeeeeccCCCC
Q 048209 110 GIHQVFLVGHDWGALIAWYFCLFRPD-----RVKALVNMSVPFPP 149 (349)
Q Consensus 110 ~~~~~~lvG~S~Gg~ia~~~a~~~p~-----~v~~lvl~~~~~~~ 149 (349)
|.+++.|||||+|+.+.+.+...-.+ .|..+++++++...
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~ 262 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPS 262 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCC
Confidence 66789999999999998877654333 38999999987765
No 220
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.02 Score=41.74 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=65.5
Q ss_pred CeeEEEEeeCC-CCeEEEEccCCCchhhHHHH--HHHHh---hCC-ceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHH-
Q 048209 32 GINMHVASIGT-GPVVLFIHGFPELWYSWRNQ--LLYLS---SRG-YRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLI- 103 (349)
Q Consensus 32 g~~~~~~~~g~-~~~iv~~hG~~~~~~~~~~~--~~~L~---~~G-~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~- 103 (349)
+..+.+.++|. +.+||+.+.-++.-..|..+ +..|+ +.| ...++++-. ...+-.. ..-...+.++.-.
T Consensus 14 ~RdMel~ryGHaG~pVvvFpts~Grf~eyed~G~v~ala~fie~G~vQlft~~gl--dsESf~a--~h~~~adr~~rH~A 89 (227)
T COG4947 14 NRDMELNRYGHAGIPVVVFPTSGGRFNEYEDFGMVDALASFIEEGLVQLFTLSGL--DSESFLA--THKNAADRAERHRA 89 (227)
T ss_pred cchhhhhhccCCCCcEEEEecCCCcchhhhhcccHHHHHHHHhcCcEEEEEeccc--chHhHhh--hcCCHHHHHHHHHH
Confidence 45677778886 56677777666655544332 23333 334 334444422 1111001 0112223332222
Q ss_pred ---HHHHHhCCceeEEEEechHHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 104 ---GLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 104 ---~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
-+++..-..+..+-|.||||..|..+--++|+.+.++|.+++.+..
T Consensus 90 yerYv~eEalpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYda 138 (227)
T COG4947 90 YERYVIEEALPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDA 138 (227)
T ss_pred HHHHHHHhhcCCCccccccchhhhhhhhhheeChhHhhhheeecceeeH
Confidence 2222222235677899999999999999999999999999987654
No 221
>PLN02934 triacylglycerol lipase
Probab=95.70 E-value=0.02 Score=49.73 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHh
Q 048209 95 ALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCL 131 (349)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~ 131 (349)
.++....+..+++.....++++.|||+||.+|..+|.
T Consensus 304 y~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 304 YYAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 3446667777777766679999999999999998875
No 222
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.59 E-value=0.02 Score=48.05 Aligned_cols=86 Identities=16% Similarity=0.254 Sum_probs=50.2
Q ss_pred CCeEEEEccCCC-chhhHHHHHHHHhhC--CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEe
Q 048209 43 GPVVLFIHGFPE-LWYSWRNQLLYLSSR--GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGH 119 (349)
Q Consensus 43 ~~~iv~~hG~~~-~~~~~~~~~~~L~~~--G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~ 119 (349)
+-.+|++||+-+ +...|...+....+. +..++.....| ......+...+--+..++++.+.+....++++-.|||
T Consensus 80 ~HLvVlthGi~~~~~~~~~~~~~~~~kk~p~~~iv~~g~~~--~~~~T~~Gv~~lG~Rla~~~~e~~~~~si~kISfvgh 157 (405)
T KOG4372|consen 80 KHLVVLTHGLHGADMEYWKEKIEQMTKKMPDKLIVVRGKMN--NMCQTFDGVDVLGERLAEEVKETLYDYSIEKISFVGH 157 (405)
T ss_pred ceEEEeccccccccHHHHHHHHHhhhcCCCcceEeeecccc--chhhccccceeeecccHHHHhhhhhccccceeeeeee
Confidence 458999999877 667787777766654 23233333332 2211111112222334555555554455679999999
Q ss_pred chHHHHHHHHH
Q 048209 120 DWGALIAWYFC 130 (349)
Q Consensus 120 S~Gg~ia~~~a 130 (349)
|+||.++..+-
T Consensus 158 SLGGLvar~AI 168 (405)
T KOG4372|consen 158 SLGGLVARYAI 168 (405)
T ss_pred ecCCeeeeEEE
Confidence 99999876543
No 223
>PLN02324 triacylglycerol lipase
Probab=95.39 E-value=0.031 Score=47.58 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCc--eeEEEEechHHHHHHHHHhh
Q 048209 98 LVGDLIGLLDKLGIH--QVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~--~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+.+.+..+++..... +|.+.|||+||.+|...|..
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 445566666655432 69999999999999998864
No 224
>PLN03037 lipase class 3 family protein; Provisional
Probab=95.24 E-value=0.036 Score=48.35 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhC----CceeEEEEechHHHHHHHHHhh
Q 048209 97 HLVGDLIGLLDKLG----IHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 97 ~~~~~~~~~~~~~~----~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+..+++..+++... ..++.+.|||+||.+|+..|..
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 44566777776553 1369999999999999988854
No 225
>PLN02802 triacylglycerol lipase
Probab=95.16 E-value=0.038 Score=48.12 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCC--ceeEEEEechHHHHHHHHHhh
Q 048209 97 HLVGDLIGLLDKLGI--HQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~--~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+..+++..+++.... .++++.|||+||.+|..+|..
T Consensus 313 qVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 313 SVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 344556666655432 268999999999999988774
No 226
>PLN02753 triacylglycerol lipase
Probab=94.90 E-value=0.05 Score=47.59 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCC-----ceeEEEEechHHHHHHHHHhh
Q 048209 97 HLVGDLIGLLDKLGI-----HQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~-----~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+..+.+..+++..+. .+|.+.|||+||.+|...|..
T Consensus 292 QVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 292 QILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 345556666665532 389999999999999998863
No 227
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=94.82 E-value=0.031 Score=41.93 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=48.8
Q ss_pred CCcEEEEEecCCccccCCcchhhhcccccccccCCc-eeEEEecCCCcccchh---cHHHHHHHHHHHHHhC
Q 048209 282 EVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYL-QEVVVMEGVAHFINQE---KAEEVGAHIYEFIKKF 349 (349)
Q Consensus 282 ~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~~e---~~~~~~~~i~~fl~~~ 349 (349)
+++.+-|-|+.|.++.+.+...- ..+...+|.. |..++.+|+||+..+. -.+++...|.+|+.++
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~AA---~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~~ 202 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHAA---HDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQH 202 (202)
T ss_pred cceeEEeecCcccCCcchHHHHH---HHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHhC
Confidence 57778899999999998765542 2266666654 3667788999986544 3588999999999875
No 228
>PLN02719 triacylglycerol lipase
Probab=94.82 E-value=0.055 Score=47.19 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCC-----ceeEEEEechHHHHHHHHHhh
Q 048209 97 HLVGDLIGLLDKLGI-----HQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~-----~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
++.+.+..+++.... .++.+.|||+||.+|..+|..
T Consensus 278 QVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 278 QVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred HHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHH
Confidence 344555666655432 279999999999999998864
No 229
>PLN02761 lipase class 3 family protein
Probab=94.67 E-value=0.062 Score=47.02 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhC-----C-ceeEEEEechHHHHHHHHHhh
Q 048209 97 HLVGDLIGLLDKLG-----I-HQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 97 ~~~~~~~~~~~~~~-----~-~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
++.+.+..+++..+ . -++.+.|||+||.+|...|..
T Consensus 273 qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~D 314 (527)
T PLN02761 273 QVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAYD 314 (527)
T ss_pred HHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHHH
Confidence 44556666666552 1 279999999999999988853
No 230
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=93.88 E-value=0.11 Score=43.70 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhh
Q 048209 96 LHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
..+.+++..+++....-++.+-|||+||.+|..+|..
T Consensus 155 ~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHH
Confidence 5667778888888776689999999999999988874
No 231
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=93.80 E-value=0.86 Score=40.56 Aligned_cols=66 Identities=9% Similarity=0.124 Sum_probs=51.6
Q ss_pred cCCcEEEEEecCCccccCCcchhhhcccccccccCC-------ceeEEEecCCCcccchh--cHHHHHHHHHHHHHh
Q 048209 281 IEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPY-------LQEVVVMEGVAHFINQE--KAEEVGAHIYEFIKK 348 (349)
Q Consensus 281 i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~gH~~~~e--~~~~~~~~i~~fl~~ 348 (349)
--..+++.||..|.++|+....+++++ +.+..+. ..++..+||.+|+.--. .+-.....|.+|+++
T Consensus 352 ~GGKLI~~HG~aD~~I~p~~ti~YY~~--V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 352 RGGKLILYHGWADPLIPPQGTIDYYER--VVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred cCCeEEEEecCCCCccCCCcHHHHHHH--HHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 358999999999999999999999854 4444432 13889999999986443 566788899999874
No 232
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=93.75 E-value=0.3 Score=47.13 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=66.1
Q ss_pred CCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhC-CceeEEEEec
Q 048209 42 TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLG-IHQVFLVGHD 120 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvG~S 120 (349)
+.|++.|+|..-+....+..++..|. .|.+|....... +.-+++..+.....-++.+. ..+..++|+|
T Consensus 2122 e~~~~Ffv~pIEG~tt~l~~la~rle----------~PaYglQ~T~~v-P~dSies~A~~yirqirkvQP~GPYrl~GYS 2190 (2376)
T KOG1202|consen 2122 EEPPLFFVHPIEGFTTALESLASRLE----------IPAYGLQCTEAV-PLDSIESLAAYYIRQIRKVQPEGPYRLAGYS 2190 (2376)
T ss_pred cCCceEEEeccccchHHHHHHHhhcC----------CcchhhhccccC-CcchHHHHHHHHHHHHHhcCCCCCeeeeccc
Confidence 37999999999888887777776553 233333222221 34478888877666666663 4589999999
Q ss_pred hHHHHHHHHHhhC--ccccceeeeeccCC
Q 048209 121 WGALIAWYFCLFR--PDRVKALVNMSVPF 147 (349)
Q Consensus 121 ~Gg~ia~~~a~~~--p~~v~~lvl~~~~~ 147 (349)
+|+.++..+|..- .+....+|++++..
T Consensus 2191 yG~~l~f~ma~~Lqe~~~~~~lillDGsp 2219 (2376)
T KOG1202|consen 2191 YGACLAFEMASQLQEQQSPAPLILLDGSP 2219 (2376)
T ss_pred hhHHHHHHHHHHHHhhcCCCcEEEecCch
Confidence 9999999998753 23456688888753
No 233
>PLN02847 triacylglycerol lipase
Probab=93.69 E-value=0.14 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.0
Q ss_pred CCceeEEEEechHHHHHHHHHhh
Q 048209 110 GIHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 110 ~~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
..-+++++|||+||.+|..++..
T Consensus 249 PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 249 PDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CCCeEEEeccChHHHHHHHHHHH
Confidence 33489999999999999887764
No 234
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=92.82 E-value=0.77 Score=36.21 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=47.5
Q ss_pred CceEEeeCCCCC-CC-CCCCCCCCcchHHHHHHHHHHHHHHh--CCceeEEEEechHHHHHHHHHhhCcc------ccce
Q 048209 70 GYRAIAPDLRGY-GD-TDAPPSVTSYTALHLVGDLIGLLDKL--GIHQVFLVGHDWGALIAWYFCLFRPD------RVKA 139 (349)
Q Consensus 70 G~~v~~~D~~G~-G~-s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~------~v~~ 139 (349)
|+.+..+++|.. +- +.........+..+=++.+.+.++.. ..++++++|+|+|+.++...+.+.-+ ....
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~ 81 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLS 81 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceE
Confidence 566777777751 11 10111012345666666676666652 33589999999999999887765311 2345
Q ss_pred eeeeccCCCC
Q 048209 140 LVNMSVPFPP 149 (349)
Q Consensus 140 lvl~~~~~~~ 149 (349)
+|+++-+..+
T Consensus 82 fVl~gnP~rp 91 (225)
T PF08237_consen 82 FVLIGNPRRP 91 (225)
T ss_pred EEEecCCCCC
Confidence 6777765444
No 235
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=1.2 Score=36.53 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=69.3
Q ss_pred CCeEEEEccCCCchhh-H---HHHHH-----------HHhhCCceEEeeCCC-CCCCCCCCCC-CCcchHHHHHHHHHHH
Q 048209 43 GPVVLFIHGFPELWYS-W---RNQLL-----------YLSSRGYRAIAPDLR-GYGDTDAPPS-VTSYTALHLVGDLIGL 105 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~-~---~~~~~-----------~L~~~G~~v~~~D~~-G~G~s~~~~~-~~~~~~~~~~~~~~~~ 105 (349)
.|..+++.|.++.+.. + ..+.+ .|.. -.++.+|-| |.|.|.-... ...-+..+.+.|+.++
T Consensus 31 ~pl~lwlqGgpGaSstG~GNFeE~GPl~~~~~~r~~TWlk~--adllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~~l 108 (414)
T KOG1283|consen 31 RPLALWLQGGPGASSTGFGNFEELGPLDLDGSPRDWTWLKD--ADLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDLVEL 108 (414)
T ss_pred CCeeEEecCCCCCCCcCccchhhcCCcccCCCcCCchhhhh--ccEEEecCCCcCceeeecCcccccccHHHHHHHHHHH
Confidence 6889999998765543 3 22221 2333 467778776 7888864432 1233577889999999
Q ss_pred HHHh-------CCceeEEEEechHHHHHHHHHhhCcc---------ccceeeeeccCCC
Q 048209 106 LDKL-------GIHQVFLVGHDWGALIAWYFCLFRPD---------RVKALVNMSVPFP 148 (349)
Q Consensus 106 ~~~~-------~~~~~~lvG~S~Gg~ia~~~a~~~p~---------~v~~lvl~~~~~~ 148 (349)
++.+ ...+++++..|.||-+|..++....+ .+.+++|-++...
T Consensus 109 lk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWIS 167 (414)
T KOG1283|consen 109 LKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWIS 167 (414)
T ss_pred HHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccC
Confidence 9876 33489999999999999888765322 3556666665443
No 236
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=92.06 E-value=2.4 Score=28.44 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHH--HHHHHHHhhCcc
Q 048209 58 SWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGA--LIAWYFCLFRPD 135 (349)
Q Consensus 58 ~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg--~ia~~~a~~~p~ 135 (349)
.|..+.+.+...||..=.+.++..|.+-...-... ..+.-.+.+..+++.....+++|||-|--. -+-..+|.++|+
T Consensus 12 ly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~-~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~ 90 (100)
T PF09949_consen 12 LYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSG-AEEHKRDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPG 90 (100)
T ss_pred HHHHHHHHHHhcCCCCCceEcccCCccccccccCC-chhHHHHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCC
Confidence 34555566667788877777777755533221011 113556678888899998999999988554 245567888999
Q ss_pred ccceeee
Q 048209 136 RVKALVN 142 (349)
Q Consensus 136 ~v~~lvl 142 (349)
+|.++.+
T Consensus 91 ~i~ai~I 97 (100)
T PF09949_consen 91 RILAIYI 97 (100)
T ss_pred CEEEEEE
Confidence 9988754
No 237
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=91.89 E-value=0.4 Score=38.34 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=24.5
Q ss_pred HHHHHHhCCceeEEEEechHHHHHHHHHhhCc
Q 048209 103 IGLLDKLGIHQVFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 103 ~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p 134 (349)
..+.+.....++.|-|||+||.+|..+..++.
T Consensus 267 ~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T KOG4540|consen 267 GAVRRIYPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred HHHHHhCCCceEEEeccccchHHHHHhccccC
Confidence 33334445568999999999999999888764
No 238
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=91.89 E-value=0.4 Score=38.34 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=24.5
Q ss_pred HHHHHHhCCceeEEEEechHHHHHHHHHhhCc
Q 048209 103 IGLLDKLGIHQVFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 103 ~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p 134 (349)
..+.+.....++.|-|||+||.+|..+..++.
T Consensus 267 ~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T COG5153 267 GAVRRIYPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred HHHHHhCCCceEEEeccccchHHHHHhccccC
Confidence 33334445568999999999999999888764
No 239
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=90.38 E-value=0.3 Score=43.37 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=53.7
Q ss_pred hCCceEEeeCCCCCCCCCC--CCCCCcch-----------HHHHHHHHHHHHHHh---CCceeEEEEechHHHHHHHHHh
Q 048209 68 SRGYRAIAPDLRGYGDTDA--PPSVTSYT-----------ALHLVGDLIGLLDKL---GIHQVFLVGHDWGALIAWYFCL 131 (349)
Q Consensus 68 ~~G~~v~~~D~~G~G~s~~--~~~~~~~~-----------~~~~~~~~~~~~~~~---~~~~~~lvG~S~Gg~ia~~~a~ 131 (349)
.+||.++.=|- ||..+.. ..... .+ +.+.+.--+++++.. ..++-+..|.|.||.-++..|.
T Consensus 57 ~~G~A~~~TD~-Gh~~~~~~~~~~~~-~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQ 134 (474)
T PF07519_consen 57 ARGYATASTDS-GHQGSAGSDDASFG-NNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQ 134 (474)
T ss_pred hcCeEEEEecC-CCCCCccccccccc-CCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHH
Confidence 45999999994 4554432 11111 22 222223334444443 3346889999999999999999
Q ss_pred hCccccceeeeeccCCCC
Q 048209 132 FRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 132 ~~p~~v~~lvl~~~~~~~ 149 (349)
+||+.++++|.-+|....
T Consensus 135 ryP~dfDGIlAgaPA~~~ 152 (474)
T PF07519_consen 135 RYPEDFDGILAGAPAINW 152 (474)
T ss_pred hChhhcCeEEeCCchHHH
Confidence 999999999999887653
No 240
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.40 E-value=1.3 Score=39.66 Aligned_cols=52 Identities=27% Similarity=0.471 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHh--C-CceeEEEEechHHHHHHHHHhh-----Ccc------ccceeeeeccC
Q 048209 95 ALHLVGDLIGLLDKL--G-IHQVFLVGHDWGALIAWYFCLF-----RPD------RVKALVNMSVP 146 (349)
Q Consensus 95 ~~~~~~~~~~~~~~~--~-~~~~~lvG~S~Gg~ia~~~a~~-----~p~------~v~~lvl~~~~ 146 (349)
+..-...+...+.+. | .++++.+||||||.++=.+... .|+ .-+|+|+++.+
T Consensus 506 l~~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 506 LAARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred HHHHHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecC
Confidence 333344444444444 3 3478899999999887665543 232 25677777766
No 241
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.33 E-value=1.1 Score=39.27 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=33.4
Q ss_pred HhCCceeEEEEechHHHHHHHHHhh-----CccccceeeeeccCCCCC
Q 048209 108 KLGIHQVFLVGHDWGALIAWYFCLF-----RPDRVKALVNMSVPFPPR 150 (349)
Q Consensus 108 ~~~~~~~~lvG~S~Gg~ia~~~a~~-----~p~~v~~lvl~~~~~~~~ 150 (349)
.+|.+|+.|||+|+|+.+.+.+... .-..|..++++++|....
T Consensus 443 ~qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~~k 490 (633)
T KOG2385|consen 443 SQGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVPTK 490 (633)
T ss_pred ccCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCccCC
Confidence 4488899999999999988866552 223589999999887653
No 242
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.55 E-value=1.9 Score=31.39 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=52.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCce-EEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYR-AIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWG 122 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~-v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~G 122 (349)
..||..-||+..++....++ |.+ .+. ++++|+...... .+ .. ..+.+.||++|||
T Consensus 12 ~LIvyFaGwgtpps~v~HLi--lpe-N~dl~lcYDY~dl~ld--------fD-------fs------Ay~hirlvAwSMG 67 (214)
T COG2830 12 HLIVYFAGWGTPPSAVNHLI--LPE-NHDLLLCYDYQDLNLD--------FD-------FS------AYRHIRLVAWSMG 67 (214)
T ss_pred EEEEEEecCCCCHHHHhhcc--CCC-CCcEEEEeehhhcCcc--------cc-------hh------hhhhhhhhhhhHH
Confidence 37888899999988776553 223 344 668888732111 11 11 1236789999999
Q ss_pred HHHHHHHHhhCccccceeeeeccCCC
Q 048209 123 ALIAWYFCLFRPDRVKALVNMSVPFP 148 (349)
Q Consensus 123 g~ia~~~a~~~p~~v~~lvl~~~~~~ 148 (349)
=.+|-+.....+ +++.+.+++..-
T Consensus 68 VwvAeR~lqg~~--lksatAiNGTgL 91 (214)
T COG2830 68 VWVAERVLQGIR--LKSATAINGTGL 91 (214)
T ss_pred HHHHHHHHhhcc--ccceeeecCCCC
Confidence 999988888765 677777776443
No 243
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=85.24 E-value=18 Score=31.28 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=63.9
Q ss_pred CeEEEEccCCCc-hhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCC---------------------CCcchHHHHHHH
Q 048209 44 PVVLFIHGFPEL-WYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS---------------------VTSYTALHLVGD 101 (349)
Q Consensus 44 ~~iv~~hG~~~~-~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~---------------------~~~~~~~~~~~~ 101 (349)
|.|+++ |...+ ...+..+.+.+.+.|..++.+|.-=.|......+ ......+.+++.
T Consensus 2 ~tI~ii-gT~DTK~~E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~g 80 (403)
T PF06792_consen 2 KTIAII-GTLDTKGEELLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARG 80 (403)
T ss_pred CEEEEE-EccCCCHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHH
Confidence 344544 44444 4567778888888999999999654443332210 011123444555
Q ss_pred HHHHHHHhC----CceeEEEEechHHHHHHHHHhhCccccceeeeecc
Q 048209 102 LIGLLDKLG----IHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145 (349)
Q Consensus 102 ~~~~~~~~~----~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 145 (349)
...++..+. +.=++-+|.|.|..++.......|--+-+++..--
T Consensus 81 a~~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST~ 128 (403)
T PF06792_consen 81 AARFVSDLYDEGKIDGVIGIGGSGGTALATAAMRALPIGFPKLMVSTM 128 (403)
T ss_pred HHHHHHHHHhcCCccEEEEecCCccHHHHHHHHHhCCCCCCeEEEEcc
Confidence 555555552 34577899999999999999888866666665443
No 244
>COG3933 Transcriptional antiterminator [Transcription]
Probab=83.08 E-value=9.1 Score=33.23 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=57.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGA 123 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg 123 (349)
..||+.||....+++ ..++..|... =-+.++|+| -+.++.+..+.+.+.+++....+=.++=..||+
T Consensus 110 ~vIiiAHG~sTASSm-aevanrLL~~-~~~~aiDMP-----------Ldvsp~~vle~l~e~~k~~~~~~GlllLVDMGS 176 (470)
T COG3933 110 KVIIIAHGYSTASSM-AEVANRLLGE-EIFIAIDMP-----------LDVSPSDVLEKLKEYLKERDYRSGLLLLVDMGS 176 (470)
T ss_pred eEEEEecCcchHHHH-HHHHHHHhhc-cceeeecCC-----------CcCCHHHHHHHHHHHHHhcCccCceEEEEecch
Confidence 589999999766654 5667666665 378999998 577889999999999999887775667778999
Q ss_pred HHHHHHH
Q 048209 124 LIAWYFC 130 (349)
Q Consensus 124 ~ia~~~a 130 (349)
..++.=.
T Consensus 177 L~~f~~~ 183 (470)
T COG3933 177 LTSFGSI 183 (470)
T ss_pred HHHHHHH
Confidence 8766433
No 245
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=81.88 E-value=8.4 Score=29.90 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=49.0
Q ss_pred HHHHhhCCc-eEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEech----HHHHHHHHHhhCc-cc
Q 048209 63 LLYLSSRGY-RAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDW----GALIAWYFCLFRP-DR 136 (349)
Q Consensus 63 ~~~L~~~G~-~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~----Gg~ia~~~a~~~p-~~ 136 (349)
.+.+...|. +|+..|.++. ..++.+.+++.+.++++..+ ..++|+|+|. |..++-++|.+.. ..
T Consensus 69 ~~~l~~~G~d~V~~~~~~~~---------~~~~~e~~a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarLga~l 138 (202)
T cd01714 69 LREALAMGADRAILVSDRAF---------AGADTLATAKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELLGWPQ 138 (202)
T ss_pred HHHHHHcCCCEEEEEecccc---------cCCChHHHHHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHhCCCc
Confidence 344445565 6777775532 35678889999999988877 6789999998 7789988888743 23
Q ss_pred cceeeee
Q 048209 137 VKALVNM 143 (349)
Q Consensus 137 v~~lvl~ 143 (349)
+..++-+
T Consensus 139 vsdv~~l 145 (202)
T cd01714 139 ITYVSKI 145 (202)
T ss_pred cceEEEE
Confidence 4444444
No 246
>PF03283 PAE: Pectinacetylesterase
Probab=81.82 E-value=8.1 Score=33.10 Aligned_cols=39 Identities=28% Similarity=0.166 Sum_probs=25.3
Q ss_pred CceeEEEEechHHHHHHHHHh----hCccccceeeeeccCCCC
Q 048209 111 IHQVFLVGHDWGALIAWYFCL----FRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 111 ~~~~~lvG~S~Gg~ia~~~a~----~~p~~v~~lvl~~~~~~~ 149 (349)
.++++|.|.|.||.-++..+. +.|..++-..+.++....
T Consensus 155 a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG~f~ 197 (361)
T PF03283_consen 155 AKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSGFFL 197 (361)
T ss_pred cceEEEeccChHHHHHHHHHHHHHHHhccCceEEEeccccccc
Confidence 358999999999998776554 456444444444554433
No 247
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=81.74 E-value=4 Score=35.02 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=39.5
Q ss_pred ccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccch-----hcHHHHHHHHHHHH
Q 048209 280 QIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQ-----EKAEEVGAHIYEFI 346 (349)
Q Consensus 280 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~-----e~~~~~~~~i~~fl 346 (349)
.-.-.+|+|+|++|++....-. +.+...+. .+.+.||++|...+ +..++....|.+|.
T Consensus 349 ~~~~rmlFVYG~nDPW~A~~f~--------l~~g~~ds-~v~~~PggnHga~I~~L~~~~r~~a~a~l~~Wa 411 (448)
T PF05576_consen 349 NNGPRMLFVYGENDPWSAEPFR--------LGKGKRDS-YVFTAPGGNHGARIAGLPEAERAEATARLRRWA 411 (448)
T ss_pred hCCCeEEEEeCCCCCcccCccc--------cCCCCcce-EEEEcCCCcccccccCCCHHHHHHHHHHHHHHc
Confidence 3356899999999998653311 33333455 77888999997543 35567777777774
No 248
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=80.95 E-value=40 Score=29.99 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=67.1
Q ss_pred EEEeeCCeeE-EEEeeCC-C-CeEEEEccCCCchhhHHH--HHHHHhhCCce-EEeeCCCCCCCCCCCCCCCcchHHHHH
Q 048209 26 TTVGTNGINM-HVASIGT-G-PVVLFIHGFPELWYSWRN--QLLYLSSRGYR-AIAPDLRGYGDTDAPPSVTSYTALHLV 99 (349)
Q Consensus 26 ~~~~~~g~~~-~~~~~g~-~-~~iv~~hG~~~~~~~~~~--~~~~L~~~G~~-v~~~D~~G~G~s~~~~~~~~~~~~~~~ 99 (349)
++++..+-.+ +|..-|+ + |..|..-|+=. ++.+.. +.+.| |.. .+.-|.|=-|.+--..+ ..+ -+.+.
T Consensus 269 r~~D~~reEi~yYFnPGD~KPPL~VYFSGyR~-aEGFEgy~MMk~L---g~PfLL~~DpRleGGaFYlGs-~ey-E~~I~ 342 (511)
T TIGR03712 269 RLVDSKRQEFIYYFNPGDFKPPLNVYFSGYRP-AEGFEGYFMMKRL---GAPFLLIGDPRLEGGAFYLGS-DEY-EQGII 342 (511)
T ss_pred eEecCCCCeeEEecCCcCCCCCeEEeeccCcc-cCcchhHHHHHhc---CCCeEEeeccccccceeeeCc-HHH-HHHHH
Confidence 3444444444 4445555 4 56677777643 333322 23333 333 44558886676643321 122 34566
Q ss_pred HHHHHHHHHhCCc--eeEEEEechHHHHHHHHHhhCccccceeeeecc
Q 048209 100 GDLIGLLDKLGIH--QVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145 (349)
Q Consensus 100 ~~~~~~~~~~~~~--~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 145 (349)
+-|.+.+++||.+ .++|-|-|||..=|+.+++... -.++|+--|
T Consensus 343 ~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKP 388 (511)
T TIGR03712 343 NVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKP 388 (511)
T ss_pred HHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCc
Confidence 7788889999876 6999999999999999998742 245554433
No 249
>PRK02399 hypothetical protein; Provisional
Probab=78.75 E-value=43 Score=29.07 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=62.4
Q ss_pred EEEccCCCch-hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCC-------------------C--CCcchHHHHHHHHHH
Q 048209 47 LFIHGFPELW-YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP-------------------S--VTSYTALHLVGDLIG 104 (349)
Q Consensus 47 v~~hG~~~~~-~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~-------------------~--~~~~~~~~~~~~~~~ 104 (349)
|++=|...++ +.+..+...+.++|..|+.+|.-..|...... . ......+.+.+-...
T Consensus 6 I~iigT~DTK~~E~~yl~~~i~~~g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~ 85 (406)
T PRK02399 6 IYIAGTLDTKGEELAYVKDLIEAAGLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAA 85 (406)
T ss_pred EEEEeccCCcHHHHHHHHHHHHHCCCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHH
Confidence 4445665555 45666677777889999999984343221111 0 011122445555555
Q ss_pred HHHHh----CCceeEEEEechHHHHHHHHHhhCccccceeeeeccCC
Q 048209 105 LLDKL----GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPF 147 (349)
Q Consensus 105 ~~~~~----~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 147 (349)
++..+ .+.-++-+|.|.|..++.......|--+-+++..--+.
T Consensus 86 ~v~~L~~~g~i~gviglGGs~GT~lat~aMr~LPiG~PKlmVSTmAs 132 (406)
T PRK02399 86 FVRELYERGDVAGVIGLGGSGGTALATPAMRALPIGVPKLMVSTMAS 132 (406)
T ss_pred HHHHHHhcCCccEEEEecCcchHHHHHHHHHhCCCCCCeEEEEcccc
Confidence 65543 24467889999999999999988887666666544333
No 250
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=77.59 E-value=4.9 Score=36.08 Aligned_cols=97 Identities=19% Similarity=0.113 Sum_probs=50.8
Q ss_pred eEEEEccCCC---chhhHHHHHHHHhh-CCceEEeeCCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHHhCC--ceeE
Q 048209 45 VVLFIHGFPE---LWYSWRNQLLYLSS-RGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGD---LIGLLDKLGI--HQVF 115 (349)
Q Consensus 45 ~iv~~hG~~~---~~~~~~~~~~~L~~-~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~ 115 (349)
.|+=+||.|. ++..-....+.+++ -|..|+.+|+-= .+..+.....++..=. +..-...+|. ++|+
T Consensus 398 li~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSL-----APEaPFPRaleEv~fAYcW~inn~allG~TgEriv 472 (880)
T KOG4388|consen 398 LIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSL-----APEAPFPRALEEVFFAYCWAINNCALLGSTGERIV 472 (880)
T ss_pred EEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeecc-----CCCCCCCcHHHHHHHHHHHHhcCHHHhCcccceEE
Confidence 6777899873 22222333443333 378999999742 2211112222222211 1222233343 5999
Q ss_pred EEEechHHHHHHHHHhh----CccccceeeeeccC
Q 048209 116 LVGHDWGALIAWYFCLF----RPDRVKALVNMSVP 146 (349)
Q Consensus 116 lvG~S~Gg~ia~~~a~~----~p~~v~~lvl~~~~ 146 (349)
++|-|.||.+++..|.+ .-..-+|+++.-++
T Consensus 473 ~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~p 507 (880)
T KOG4388|consen 473 LAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYPP 507 (880)
T ss_pred EeccCCCcceeehhHHHHHHhCCCCCCceEEecCh
Confidence 99999999865544443 22223666665554
No 251
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=75.96 E-value=19 Score=25.40 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=20.1
Q ss_pred CCCeEEEEccCCCchhhH--HHHHHHHhhCC
Q 048209 42 TGPVVLFIHGFPELWYSW--RNQLLYLSSRG 70 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~--~~~~~~L~~~G 70 (349)
++|.|+-+||++|+...| +-+++.|-+.|
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 378888899999887665 33455555544
No 252
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=75.28 E-value=8.8 Score=28.87 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=28.9
Q ss_pred CCCCeEEEEccCCCchhh--HHHHHHHHhhCCceEEeeC
Q 048209 41 GTGPVVLFIHGFPELWYS--WRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 41 g~~~~iv~~hG~~~~~~~--~~~~~~~L~~~G~~v~~~D 77 (349)
+.++.+|++-|++++... -..+.+.|.++|+.++.+|
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 346789999999877543 3445578889999999998
No 253
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=74.60 E-value=5 Score=33.48 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=25.6
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhhC
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
+.+.+++.|+..-.++|.|+|+.++..++..+
T Consensus 33 vL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 33 VIKALEEAGIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 45555566877778899999999999999874
No 254
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=74.19 E-value=3 Score=35.04 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=25.1
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhh
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+.++++..|.++-.++|||+|=+.|+.++..
T Consensus 74 l~~~l~~~Gi~P~~v~GhSlGE~aA~~aaG~ 104 (318)
T PF00698_consen 74 LARLLRSWGIKPDAVIGHSLGEYAALVAAGA 104 (318)
T ss_dssp HHHHHHHTTHCESEEEESTTHHHHHHHHTTS
T ss_pred hhhhhcccccccceeeccchhhHHHHHHCCc
Confidence 4555677788999999999999988877654
No 255
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=73.76 E-value=46 Score=29.03 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=55.3
Q ss_pred CeEEEEccCCCc---hhhHHHHHHHHhhCCceEEeeCCCC--CCCCCCCCCCCcchHHHHHHHHHHHHHH---hCCceeE
Q 048209 44 PVVLFIHGFPEL---WYSWRNQLLYLSSRGYRAIAPDLRG--YGDTDAPPSVTSYTALHLVGDLIGLLDK---LGIHQVF 115 (349)
Q Consensus 44 ~~iv~~hG~~~~---~~~~~~~~~~L~~~G~~v~~~D~~G--~G~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 115 (349)
.++|+++-+... .......+..|.+.|+.|+-+..-- +|+.... .-.+++++++.+...+.. +..+++.
T Consensus 113 ~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g---~~~~~~~i~~~v~~~~~~~~~~~~~~vl 189 (390)
T TIGR00521 113 APIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKG---RLAEPETIVKAAEREFSPKEDLEGKRVL 189 (390)
T ss_pred CCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccccccCC---CCCCHHHHHHHHHHHHhhccccCCceEE
Confidence 467777764322 2244667788888888776655221 2333221 234677788877777644 4445666
Q ss_pred EEEe------------------chHHHHHHHHHhhCccccceeeeecc
Q 048209 116 LVGH------------------DWGALIAWYFCLFRPDRVKALVNMSV 145 (349)
Q Consensus 116 lvG~------------------S~Gg~ia~~~a~~~p~~v~~lvl~~~ 145 (349)
+.|. .||..+|..++.+. ..++++.+
T Consensus 190 it~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G----a~V~~~~g 233 (390)
T TIGR00521 190 ITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG----ADVTLITG 233 (390)
T ss_pred EecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC----CEEEEeCC
Confidence 6666 35666776666654 33455454
No 256
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=72.33 E-value=5.1 Score=33.27 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=24.8
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhh
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+.+.++..|.++-.++|||+|-..|+.++..
T Consensus 72 ~~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag~ 102 (298)
T smart00827 72 LARLWRSWGVRPDAVVGHSLGEIAAAYVAGV 102 (298)
T ss_pred HHHHHHHcCCcccEEEecCHHHHHHHHHhCC
Confidence 3445567788999999999999998877754
No 257
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=72.02 E-value=7.1 Score=29.31 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=24.6
Q ss_pred HHHHHHhCCceeEEEEechHHHHHHHHHhhCc
Q 048209 103 IGLLDKLGIHQVFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 103 ~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p 134 (349)
.+.+...+...-.+.|.|.|+.++..++...+
T Consensus 17 l~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 17 AKALRERGPLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHcCCCCCEEEEECHHHHHHHHHHcCCC
Confidence 34444457777789999999999999998654
No 258
>PRK10279 hypothetical protein; Provisional
Probab=71.84 E-value=6.1 Score=32.86 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=26.4
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhhCcc
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPD 135 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~ 135 (349)
+.+.++..|+..-.++|.|+|+.++..+|....+
T Consensus 23 VL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~~~ 56 (300)
T PRK10279 23 VINALKKVGIEIDIVAGCSIGSLVGAAYACDRLS 56 (300)
T ss_pred HHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCChH
Confidence 3445555677777899999999999999986543
No 259
>PRK12467 peptide synthase; Provisional
Probab=71.31 E-value=19 Score=41.86 Aligned_cols=97 Identities=10% Similarity=0.028 Sum_probs=65.2
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh-CCceeEEEEechH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL-GIHQVFLVGHDWG 122 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lvG~S~G 122 (349)
+.++..|...++...+.++...|.. +..++.+..++.-.... ...++..++....+.+... ...+..+.|+|+|
T Consensus 3693 ~~l~~~h~~~r~~~~~~~l~~~l~~-~~~~~~l~~~~~~~d~~----~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g 3767 (3956)
T PRK12467 3693 PALFCRHEGLGTVFDYEPLAVILEG-DRHVLGLTCRHLLDDGW----QDTSLQAMAVQYADYILWQQAKGPYGLLGWSLG 3767 (3956)
T ss_pred cceeeechhhcchhhhHHHHHHhCC-CCcEEEEeccccccccC----CccchHHHHHHHHHHHHHhccCCCeeeeeeecc
Confidence 5699999998888778888777765 37888887765432221 2235666666666665554 3347899999999
Q ss_pred HHHHHHHHhh---Cccccceeeeecc
Q 048209 123 ALIAWYFCLF---RPDRVKALVNMSV 145 (349)
Q Consensus 123 g~ia~~~a~~---~p~~v~~lvl~~~ 145 (349)
|.++..++.. ..+.+.-+.++..
T Consensus 3768 ~~~a~~~~~~l~~~g~~~~~~~~~~~ 3793 (3956)
T PRK12467 3768 GTLARLVAELLEREGESEAFLGLFDN 3793 (3956)
T ss_pred hHHHHHHHHHHHHcCCceeEEEEEec
Confidence 9999888764 3344555555543
No 260
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=70.49 E-value=7.6 Score=29.79 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=22.6
Q ss_pred HHHHhCCceeEEEEechHHHHHHHHHhhC
Q 048209 105 LLDKLGIHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 105 ~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
.++..+...-.++|.|.||.+|..++...
T Consensus 20 ~L~e~~~~~d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 20 ALEEAGILKKRVAGTSAGAITAALLALGY 48 (194)
T ss_pred HHHHcCCCcceEEEECHHHHHHHHHHcCC
Confidence 34445666678899999999999999754
No 261
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=70.30 E-value=7.6 Score=31.69 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=25.0
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhhC
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
+.+.+++.++.--.+.|.|+|+.++..+|...
T Consensus 28 VL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 28 ILQALEEAGIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHcCCCccEEEEECHHHHHHHHHHcCC
Confidence 34445666777667899999999999999864
No 262
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=70.03 E-value=6.2 Score=32.76 Aligned_cols=32 Identities=16% Similarity=-0.098 Sum_probs=24.9
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhhC
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
+...+...|.++..++|||+|=..|+.++...
T Consensus 66 l~~~l~~~g~~P~~v~GhS~GE~aAa~~aG~~ 97 (295)
T TIGR03131 66 AWRALLALLPRPSAVAGYSVGEYAAAVVAGVL 97 (295)
T ss_pred HHHHHHhcCCCCcEEeecCHHHHHHHHHhCCC
Confidence 34455667888999999999999888877543
No 263
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=69.78 E-value=44 Score=27.54 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=46.7
Q ss_pred CeEEEEccCCCchhh------HHHHHHHH-hhCCceEEeeCCCCCCCC--------CCCC-----CCCcchHHHHHHH-H
Q 048209 44 PVVLFIHGFPELWYS------WRNQLLYL-SSRGYRAIAPDLRGYGDT--------DAPP-----SVTSYTALHLVGD-L 102 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~------~~~~~~~L-~~~G~~v~~~D~~G~G~s--------~~~~-----~~~~~~~~~~~~~-~ 102 (349)
..|||+=|.+.+... -..+.+.+ ...+-..+++=.+|.|-. .... ......+++-+.+ .
T Consensus 2 ~iv~~fDGT~n~~~~~~~~TNV~rL~~~~~~~~~~~q~~~Y~~GvGt~~~~~~~~~~~~~~~~~~~a~g~g~~~~I~~ay 81 (277)
T PF09994_consen 2 RIVVFFDGTGNNPDNDPPPTNVARLYDAYKDRDGERQIVYYIPGVGTEFGSEFGESGRALDRLLGGAFGWGIEARIRDAY 81 (277)
T ss_pred cEEEEecCCCCCCCCCccccHHHHHHHHhhccCCCceeEEEecccccccccccccccchhhhccCchhhcchHHHHHHHH
Confidence 457788887644321 23334444 222334445555677761 1100 0011233333333 2
Q ss_pred HHHHHHh-CCceeEEEEechHHHHHHHHHhh
Q 048209 103 IGLLDKL-GIHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 103 ~~~~~~~-~~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
..+++.. ...++.++|.|-|+..|-.++..
T Consensus 82 ~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 82 RFLSKNYEPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred HHHHhccCCcceEEEEecCccHHHHHHHHHH
Confidence 3333433 34579999999999999888864
No 264
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=68.34 E-value=9.7 Score=30.05 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=21.9
Q ss_pred HHHhCCceeEEEEechHHHHHHHHHhhC
Q 048209 106 LDKLGIHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 106 ~~~~~~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
++..+.+.-.++|.|.|+.+|..+|...
T Consensus 22 L~e~gi~~~~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 22 LLEMGLEPSAISGTSAGALVGGLFASGI 49 (221)
T ss_pred HHHcCCCceEEEEeCHHHHHHHHHHcCC
Confidence 3444666667999999999999999754
No 265
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=68.11 E-value=5.9 Score=30.37 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=25.2
Q ss_pred eEEEEcc---CCCchhhHHHHHHHHhhCCceEEeeC
Q 048209 45 VVLFIHG---FPELWYSWRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 45 ~iv~~hG---~~~~~~~~~~~~~~L~~~G~~v~~~D 77 (349)
.||++|. ...+......+++.|.++||+++.++
T Consensus 153 ~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 153 DIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred CEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEHH
Confidence 5889993 23445667888899999999988774
No 266
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=68.03 E-value=37 Score=23.43 Aligned_cols=73 Identities=14% Similarity=0.030 Sum_probs=49.2
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhC-CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhC-CceeEEEEechH
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSR-GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLG-IHQVFLVGHDWG 122 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvG~S~G 122 (349)
.||.-|| .-+......++.+... --.+.++++. ...+.+++.+.+.+.++.+. .+.+.++--=+|
T Consensus 2 iii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~-----------~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~g 68 (116)
T PF03610_consen 2 IIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLY-----------PDESIEDFEEKLEEAIEELDEGDGVLILTDLGG 68 (116)
T ss_dssp EEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEET-----------TTSCHHHHHHHHHHHHHHCCTTSEEEEEESSTT
T ss_pred EEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECc-----------CCCCHHHHHHHHHHHHHhccCCCcEEEEeeCCC
Confidence 4777899 5555566667666654 2467777765 34578889999999998886 456666666666
Q ss_pred HHHHHHHH
Q 048209 123 ALIAWYFC 130 (349)
Q Consensus 123 g~ia~~~a 130 (349)
|.....++
T Consensus 69 gsp~n~a~ 76 (116)
T PF03610_consen 69 GSPFNEAA 76 (116)
T ss_dssp SHHHHHHH
T ss_pred CccchHHH
Confidence 65444433
No 267
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=67.98 E-value=64 Score=28.27 Aligned_cols=73 Identities=22% Similarity=0.215 Sum_probs=43.3
Q ss_pred CCeEEEEccCCCc---hhhHHHHHHHHhhCCceEEeeCCCCC---CCCCCCCCCCcchHHHHHHHHHHHHHH--hCCcee
Q 048209 43 GPVVLFIHGFPEL---WYSWRNQLLYLSSRGYRAIAPDLRGY---GDTDAPPSVTSYTALHLVGDLIGLLDK--LGIHQV 114 (349)
Q Consensus 43 ~~~iv~~hG~~~~---~~~~~~~~~~L~~~G~~v~~~D~~G~---G~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 114 (349)
+.++|+++.+... .......+..|.+.|+.|+-++ +|+ |+.... .--++++.+..+...+.. +..+++
T Consensus 116 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~-~g~la~~~~g~g---r~~~~~~I~~~~~~~~~~~~l~gk~v 191 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPA-SGRLACGDVGPG---RMAEPEEIVAAAERALSPKDLAGKRV 191 (399)
T ss_pred CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCC-CccccCCCcCCC---CCCCHHHHHHHHHHHhhhcccCCCEE
Confidence 3577788755322 2224666788888898888654 333 333221 233577777777776643 334567
Q ss_pred EEEEe
Q 048209 115 FLVGH 119 (349)
Q Consensus 115 ~lvG~ 119 (349)
.+.|.
T Consensus 192 lITgG 196 (399)
T PRK05579 192 LITAG 196 (399)
T ss_pred EEeCC
Confidence 77776
No 268
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=67.19 E-value=8.6 Score=32.17 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.6
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhhCc
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p 134 (349)
+.+.++..|++.-.+.|.|+|+.++..+|....
T Consensus 29 Vl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 29 VLKALEEAGIPIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred HHHHHHHcCCCccEEEecCHHHHHHHHHHcCCC
Confidence 455566667788899999999999999998643
No 269
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=65.64 E-value=22 Score=26.04 Aligned_cols=49 Identities=27% Similarity=0.238 Sum_probs=33.2
Q ss_pred CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHH
Q 048209 70 GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYF 129 (349)
Q Consensus 70 G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~ 129 (349)
|-.|+++|.+| ..++.+++++.+..+.+ .|.+=.+++|.|.|=-=++..
T Consensus 67 ~~~vi~Ld~~G----------k~~sSe~fA~~l~~~~~-~G~~i~f~IGG~~Gl~~~~~~ 115 (155)
T COG1576 67 GSYVVLLDIRG----------KALSSEEFADFLERLRD-DGRDISFLIGGADGLSEAVKA 115 (155)
T ss_pred CCeEEEEecCC----------CcCChHHHHHHHHHHHh-cCCeEEEEEeCcccCCHHHHH
Confidence 67899999987 45566777777766644 342334688999886555444
No 270
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=65.24 E-value=9.2 Score=31.24 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=28.4
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeC
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D 77 (349)
-.||++|....+......+++.|.++||.++.++
T Consensus 231 G~IILmHd~~~T~~aL~~iI~~Lk~kGy~fvtl~ 264 (268)
T TIGR02873 231 GAMVLMHPTASSTEGLEEMITIIKEKGYKIGTIT 264 (268)
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHCCCEEEeHH
Confidence 3688999877777778889999999999988775
No 271
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=65.22 E-value=8.3 Score=31.85 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=24.0
Q ss_pred HHHHHHhC-CceeEEEEechHHHHHHHHHhhC
Q 048209 103 IGLLDKLG-IHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 103 ~~~~~~~~-~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
...+...| ..+..++|||+|=+.|+.++...
T Consensus 73 ~~~l~~~g~i~p~~v~GhS~GE~aAa~~aG~l 104 (290)
T TIGR00128 73 YLKLKEQGGLKPDFAAGHSLGEYSALVAAGAL 104 (290)
T ss_pred HHHHHHcCCCCCCEEeecCHHHHHHHHHhCCC
Confidence 33445566 88999999999999988877654
No 272
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=64.11 E-value=13 Score=27.92 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=22.5
Q ss_pred HHHhCCceeEEEEechHHHHHHHHHhhCc
Q 048209 106 LDKLGIHQVFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 106 ~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p 134 (349)
++..+...-.++|.|.|+.+|..++...+
T Consensus 22 L~e~g~~~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 22 LEEEGIEIDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred HHHCCCCeeEEEEeCHHHHHHHHHHcCCC
Confidence 34446666678999999999999988654
No 273
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=63.72 E-value=6.6 Score=34.45 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=26.2
Q ss_pred HHHhCCceeEEEEechHHHHHHHHHhhCcccccee
Q 048209 106 LDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140 (349)
Q Consensus 106 ~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~l 140 (349)
+...++.+-++.|.|.|+.+|..++...++++..+
T Consensus 95 L~E~gl~p~vIsGTSaGAivAal~as~~~eel~~~ 129 (421)
T cd07230 95 LFEANLLPRIISGSSAGSIVAAILCTHTDEEIPEL 129 (421)
T ss_pred HHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHHH
Confidence 33345666789999999999999999777664443
No 274
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=63.56 E-value=34 Score=27.99 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCC--------CCCCC---CCCCC--CcchHHHHHHHHHHHHHHh
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG--------YGDTD---APPSV--TSYTALHLVGDLIGLLDKL 109 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G--------~G~s~---~~~~~--~~~~~~~~~~~~~~~~~~~ 109 (349)
-|.|+|.-|.++. ++.|+..||.|+.+|+-= .|..- ...++ -.-+.+.+.+-+.+.++..
T Consensus 252 vPmi~fakG~g~~-------Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~f 324 (359)
T KOG2872|consen 252 VPMILFAKGSGGA-------LEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDF 324 (359)
T ss_pred CceEEEEcCcchH-------HHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHh
Confidence 3778888877643 567788899999999731 11110 00010 1225666777888888888
Q ss_pred CCcee-EEEEec
Q 048209 110 GIHQV-FLVGHD 120 (349)
Q Consensus 110 ~~~~~-~lvG~S 120 (349)
|.++. .=+||.
T Consensus 325 G~~ryI~NLGHG 336 (359)
T KOG2872|consen 325 GKSRYIANLGHG 336 (359)
T ss_pred CccceEEecCCC
Confidence 86654 346774
No 275
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=63.40 E-value=11 Score=29.85 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=27.6
Q ss_pred CeEEEEccC-CCchhhHHHHHHHHhhCCceEEeeC
Q 048209 44 PVVLFIHGF-PELWYSWRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 44 ~~iv~~hG~-~~~~~~~~~~~~~L~~~G~~v~~~D 77 (349)
..||++|.. ..+......+++.|.++||+++.++
T Consensus 187 g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 187 GAILLLHAVSKDNAEALDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEhH
Confidence 368889974 4566778889999999999998875
No 276
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.88 E-value=15 Score=29.98 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCC---ceeEEEEechHHHHHHHHHh---hCccccceeeeeccCCCC
Q 048209 97 HLVGDLIGLLDKLGI---HQVFLVGHDWGALIAWYFCL---FRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~---~~~~lvG~S~Gg~ia~~~a~---~~p~~v~~lvl~~~~~~~ 149 (349)
.+.+.+.+.+..+.. .+++|.|-|+|+.-+...-. ..-+++++.+..+++...
T Consensus 91 aL~~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~s 149 (289)
T PF10081_consen 91 ALFEAVYARWSTLPEDRRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFFS 149 (289)
T ss_pred HHHHHHHHHHHhCCcccCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCCC
Confidence 344445555555532 37999999999886554332 233569999999987654
No 277
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=62.16 E-value=19 Score=32.05 Aligned_cols=65 Identities=14% Similarity=0.016 Sum_probs=39.0
Q ss_pred CCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccchhcHHHHHHHHHHHHH
Q 048209 282 EVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQEKAEEVGAHIYEFIK 347 (349)
Q Consensus 282 ~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~fl~ 347 (349)
+.+++...|=.|..+++-....-.+.-.......+...+.+++ +||++..++|+.....+..|+.
T Consensus 425 ~Lkw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~-aGHMvp~d~P~~~~~~~~~~~~ 489 (498)
T COG2939 425 KLKWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYE-AGHMVPYDRPESSLEMVNLWIN 489 (498)
T ss_pred cceEeeecchhhhcCCCcccccchhhcccccccCCceEEEEec-CcceeecCChHHHHHHHHHHHh
Confidence 4556666666666666554432211111112222331344554 7999999999999999988875
No 278
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=61.92 E-value=14 Score=29.05 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHHHHHhCCceeEEEEechHHHHHHHHHhhCc
Q 048209 103 IGLLDKLGIHQVFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 103 ~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p 134 (349)
.+.+.+.+...-.++|.|.|+.+|..++...+
T Consensus 17 l~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 17 LKALAEAGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHcCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 33344556666678999999999999999765
No 279
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=61.54 E-value=51 Score=25.46 Aligned_cols=33 Identities=24% Similarity=0.123 Sum_probs=22.7
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCC
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~ 79 (349)
.+..+-|. ++..=+.++..|+++|++|++.|+.
T Consensus 15 k~~~vtGg--~sGIGrAia~~la~~Garv~v~dl~ 47 (256)
T KOG1200|consen 15 KVAAVTGG--SSGIGRAIAQLLAKKGARVAVADLD 47 (256)
T ss_pred ceeEEecC--CchHHHHHHHHHHhcCcEEEEeecc
Confidence 34444443 3334467788999999999999864
No 280
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=61.17 E-value=8.4 Score=32.11 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=25.8
Q ss_pred HHHhCCceeEEEEechHHHHHHHHHhhCcccccee
Q 048209 106 LDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKAL 140 (349)
Q Consensus 106 ~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~l 140 (349)
+...+..+-++.|-|.|+.+|..++...++.+..+
T Consensus 90 L~e~gl~p~~i~GsSaGAivaa~~~~~t~~El~~~ 124 (323)
T cd07231 90 LVEHQLLPRVIAGSSVGSIVCAIIATRTDEELQSF 124 (323)
T ss_pred HHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHHH
Confidence 33446667789999999999999988765544443
No 281
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=60.97 E-value=8.3 Score=33.29 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=27.7
Q ss_pred HHHHhCCceeEEEEechHHHHHHHHHhhCccccceee
Q 048209 105 LLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALV 141 (349)
Q Consensus 105 ~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lv 141 (349)
.+...|..+-++.|-|.|+.+|..+|...++.+..+.
T Consensus 104 aL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l 140 (391)
T cd07229 104 ALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFL 140 (391)
T ss_pred HHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHH
Confidence 3344466677899999999999999997666655554
No 282
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=60.49 E-value=8.3 Score=33.69 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=28.0
Q ss_pred HHHHhCCceeEEEEechHHHHHHHHHhhCccccceee
Q 048209 105 LLDKLGIHQVFLVGHDWGALIAWYFCLFRPDRVKALV 141 (349)
Q Consensus 105 ~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lv 141 (349)
.+...+..+-++.|.|.|+.+|..++...++.+..++
T Consensus 88 aL~e~gllp~iI~GtSAGAivaalla~~t~~el~~~~ 124 (407)
T cd07232 88 ALLDADLLPNVISGTSGGSLVAALLCTRTDEELKQLL 124 (407)
T ss_pred HHHhCCCCCCEEEEECHHHHHHHHHHcCCHHHHHHHH
Confidence 3333466677899999999999999997776665553
No 283
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=59.53 E-value=20 Score=26.98 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=21.5
Q ss_pred HHHhCCceeEEEEechHHHHHHHHHhhC
Q 048209 106 LDKLGIHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 106 ~~~~~~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
++..+...-.++|.|.|+.+|..++...
T Consensus 22 L~~~~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 22 LEEAGIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHcCCCeeEEEEECHHHHHHHHHHcCC
Confidence 3444555667899999999999998754
No 284
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=58.56 E-value=82 Score=26.63 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=33.6
Q ss_pred EEEeeCCeeEEEEeeCC-------CCeEEEEccCCCchhhHHHHHHHHhhC--CceEEeeCCCC
Q 048209 26 TTVGTNGINMHVASIGT-------GPVVLFIHGFPELWYSWRNQLLYLSSR--GYRAIAPDLRG 80 (349)
Q Consensus 26 ~~~~~~g~~~~~~~~g~-------~~~iv~~hG~~~~~~~~~~~~~~L~~~--G~~v~~~D~~G 80 (349)
+|-+..+-..||...|+ +++=+|+||.|..... ..+.++|.++ +..|+.+|.-+
T Consensus 187 Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTi-tgvGRylke~~~~~kVv~vdp~~ 249 (362)
T KOG1252|consen 187 QFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTI-TGVGRYLKEQNPNIKVVGVDPQE 249 (362)
T ss_pred HhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCcee-echhHHHHHhCCCCEEEEeCCCc
Confidence 33444556678887775 6777888887644322 2445566654 47788888643
No 285
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=58.50 E-value=84 Score=24.28 Aligned_cols=79 Identities=20% Similarity=0.112 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhC-c
Q 048209 56 WYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFR-P 134 (349)
Q Consensus 56 ~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~-p 134 (349)
........+.+.++++.++.+|-+|... .-.+..+.+..+++......++||=-+..+.-.+..+..+ .
T Consensus 69 ~~~~~~~l~~~~~~~~D~vlIDT~Gr~~----------~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~ 138 (196)
T PF00448_consen 69 AEIAREALEKFRKKGYDLVLIDTAGRSP----------RDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYE 138 (196)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEE-SSSS----------THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCcch----------hhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhh
Confidence 3344455666777789999999987431 2345677778888887666777665555555454443332 2
Q ss_pred -cccceeeeec
Q 048209 135 -DRVKALVNMS 144 (349)
Q Consensus 135 -~~v~~lvl~~ 144 (349)
-.++++|+.-
T Consensus 139 ~~~~~~lIlTK 149 (196)
T PF00448_consen 139 AFGIDGLILTK 149 (196)
T ss_dssp HSSTCEEEEES
T ss_pred cccCceEEEEe
Confidence 2378888654
No 286
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=57.18 E-value=22 Score=29.85 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=16.3
Q ss_pred EEEEechHHHHHHHHHhhC
Q 048209 115 FLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~~~ 133 (349)
.+.|.|+||.+|+.++..+
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 4779999999999999754
No 287
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=56.29 E-value=34 Score=27.10 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEE
Q 048209 59 WRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLV 117 (349)
Q Consensus 59 ~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 117 (349)
++.+++.|.++|+.|..+.+.- ..+...+.+.+...++..+..++.++
T Consensus 51 MRhfa~~L~~~G~~V~Y~~~~~-----------~~~~~s~~~~L~~~~~~~~~~~~~~~ 98 (224)
T PF04244_consen 51 MRHFADELRAKGFRVHYIELDD-----------PENTQSFEDALARALKQHGIDRLHVM 98 (224)
T ss_dssp HHHHHHHHHHTT--EEEE-TT------------TT--SSHHHHHHHHHHHH----EEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCC-----------ccccccHHHHHHHHHHHcCCCEEEEE
Confidence 5677889999999999998761 11222466677788888887777765
No 288
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=55.47 E-value=57 Score=25.31 Aligned_cols=62 Identities=19% Similarity=0.110 Sum_probs=37.1
Q ss_pred CCeEEEEccCCCc---hhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 048209 43 GPVVLFIHGFPEL---WYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK 108 (349)
Q Consensus 43 ~~~iv~~hG~~~~---~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~ 108 (349)
.+|++++||.... ...-..+.+.|.+.|..+...-++|-|..-.. .....+..+.+.+++++
T Consensus 144 ~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~----~~~~~~~~~~~~~f~~~ 208 (213)
T PF00326_consen 144 KPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGN----PENRRDWYERILDFFDK 208 (213)
T ss_dssp GSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTS----HHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCC----chhHHHHHHHHHHHHHH
Confidence 5899999998653 34445677888888877666666654442211 11233555556665543
No 289
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=54.69 E-value=16 Score=33.27 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=25.6
Q ss_pred HHHH-HHhCCceeEEEEechHHHHHHHHHhhC
Q 048209 103 IGLL-DKLGIHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 103 ~~~~-~~~~~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
.+++ +..|+++-.++|||+|=..|+..|.-.
T Consensus 255 a~ll~~~~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 255 TQLLCDEFAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HHHHHHhcCCCCCEEeecCHHHHHHHHHhCCC
Confidence 4445 578999999999999999999888765
No 290
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=54.39 E-value=67 Score=25.12 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=27.2
Q ss_pred CCeEEEEccCCCchhh--H-HHHHHHHhhCCceEEeeCCC
Q 048209 43 GPVVLFIHGFPELWYS--W-RNQLLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~--~-~~~~~~L~~~G~~v~~~D~~ 79 (349)
++.|.|++-.+.+... | ......|++.|..+..+++-
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~ 71 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLS 71 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeecc
Confidence 5789999988776654 3 44456788889888888754
No 291
>PHA02114 hypothetical protein
Probab=54.21 E-value=20 Score=23.55 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=26.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeC
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D 77 (349)
+||+=--+..+..-|..++..|.+.||+|++-.
T Consensus 84 tivldvn~amsr~pwi~v~s~le~~g~~vvatq 116 (127)
T PHA02114 84 TIVLDVNYAMSRAPWIKVISRLEEAGFNVVATQ 116 (127)
T ss_pred eEEEEehhhhccCcHHHHHHHHHhcCceeeehh
Confidence 566666677788889999999999999998753
No 292
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.66 E-value=79 Score=27.83 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=50.7
Q ss_pred HHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCccc--cceeee
Q 048209 65 YLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPDR--VKALVN 142 (349)
Q Consensus 65 ~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~~--v~~lvl 142 (349)
.+.+.+|.|+.+|--|. ...-+++.+.+.++-+.+....+.+|--+|=|.-|...|..+.+. +.|+|+
T Consensus 177 ~ak~~~~DvvIvDTAGR----------l~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIl 246 (451)
T COG0541 177 KAKEEGYDVVIVDTAGR----------LHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVIL 246 (451)
T ss_pred HHHHcCCCEEEEeCCCc----------ccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEE
Confidence 33444566666665431 222356777888888888888899999999999999988877653 788887
Q ss_pred eccC
Q 048209 143 MSVP 146 (349)
Q Consensus 143 ~~~~ 146 (349)
.---
T Consensus 247 TKlD 250 (451)
T COG0541 247 TKLD 250 (451)
T ss_pred Eccc
Confidence 6543
No 293
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=53.60 E-value=29 Score=21.87 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=18.2
Q ss_pred CCceeEEEEechHHHHHHHHHhhC
Q 048209 110 GIHQVFLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 110 ~~~~~~lvG~S~Gg~ia~~~a~~~ 133 (349)
+.+++.++|-|-|=.+|.+.++.+
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHH
T ss_pred CCceEEEEecCCcccHHHHHHHHh
Confidence 556899999999988988777764
No 294
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=53.58 E-value=29 Score=25.63 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=28.9
Q ss_pred CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHH
Q 048209 70 GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGA 123 (349)
Q Consensus 70 G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg 123 (349)
+-.++++|-.| ..++-+++++.+..+...-..+=++++|.+.|=
T Consensus 67 ~~~~i~Ld~~G----------k~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 67 NDYVILLDERG----------KQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp TSEEEEE-TTS----------EE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred CCEEEEEcCCC----------ccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 57789999886 567788888888888766332346689999984
No 295
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=52.71 E-value=35 Score=25.23 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=25.5
Q ss_pred CCeEEEEccCCCchhh--HHHHHHHHhhCCceEEeeC
Q 048209 43 GPVVLFIHGFPELWYS--WRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~--~~~~~~~L~~~G~~v~~~D 77 (349)
++.+|++-|.+++... -..+.+.|.+.|+.++.+|
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 3679999999877543 3445677888899999997
No 296
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=51.94 E-value=25 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=22.3
Q ss_pred HHHhCCc-eeEEEEechHHHHHHHHHhhCcc
Q 048209 106 LDKLGIH-QVFLVGHDWGALIAWYFCLFRPD 135 (349)
Q Consensus 106 ~~~~~~~-~~~lvG~S~Gg~ia~~~a~~~p~ 135 (349)
+...+.. --.++|.|.|+.++..++...+.
T Consensus 20 l~e~~~~~fd~i~GtSaGAi~a~~~~~g~~~ 50 (266)
T cd07208 20 FLEAGIRPFDLVIGVSAGALNAASYLSGQRG 50 (266)
T ss_pred HHHcCCCCCCEEEEECHHHHhHHHHHhCCcc
Confidence 3344555 44789999999999999887654
No 297
>PRK09273 hypothetical protein; Provisional
Probab=50.45 E-value=1.2e+02 Score=23.70 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=42.5
Q ss_pred hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeE-EEEechHHHHHHHHHhhCcc
Q 048209 57 YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVF-LVGHDWGALIAWYFCLFRPD 135 (349)
Q Consensus 57 ~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lvG~S~Gg~ia~~~a~~~p~ 135 (349)
..+..+...|.+.||.|+=+-. + .... ...++-+++..+...+..-..+..+ +.|.-.|..+ .|.++|.
T Consensus 17 ~i~~~L~~~L~~~G~eV~D~G~--~---~~~~--~s~dYpd~a~~vA~~V~~g~~d~GIliCGTGiG~si---AANK~pG 86 (211)
T PRK09273 17 IIYEALKKVADPKGHEVFNYGM--Y---DEED--HQLTYVQNGIMASILLNSKAVDFVVTGCGTGQGAML---ALNSFPG 86 (211)
T ss_pred HHHHHHHHHHHHCCCEEEEeCC--C---CCCC--CCCChHHHHHHHHHHHHcCCCCEEEEEcCcHHHHHH---HHhcCCC
Confidence 4577888899999998854332 1 1110 1345666777666666543333433 3444455444 4667886
Q ss_pred ccceeeeec
Q 048209 136 RVKALVNMS 144 (349)
Q Consensus 136 ~v~~lvl~~ 144 (349)
|++..+.+
T Consensus 87 -Iraalc~d 94 (211)
T PRK09273 87 -VVCGYCID 94 (211)
T ss_pred -eEEEEeCC
Confidence 44444444
No 298
>PRK14974 cell division protein FtsY; Provisional
Probab=49.85 E-value=1.5e+02 Score=25.26 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=42.8
Q ss_pred hhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCc--cccceeeeec
Q 048209 67 SSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRP--DRVKALVNMS 144 (349)
Q Consensus 67 ~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p--~~v~~lvl~~ 144 (349)
...|+.++.+|-.|.... -..+.+.+..+.+......+++|.-+.-|.-+..-+..+. -.+.++|+.-
T Consensus 219 ~~~~~DvVLIDTaGr~~~----------~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTK 288 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHT----------DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTK 288 (336)
T ss_pred HhCCCCEEEEECCCccCC----------cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEee
Confidence 345789999998865432 2345566666666666566777777766766665555432 2467777654
No 299
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=49.55 E-value=17 Score=26.89 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=29.2
Q ss_pred EeeCCCCCCCCCCC-CCCCcchHHHHHHHH----HHHHHHhC----CceeEEEEechHHH
Q 048209 74 IAPDLRGYGDTDAP-PSVTSYTALHLVGDL----IGLLDKLG----IHQVFLVGHDWGAL 124 (349)
Q Consensus 74 ~~~D~~G~G~s~~~-~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~lvG~S~Gg~ 124 (349)
+.+-+-|||..... .....++..+++.-+ ..+.+..+ .+++.|+|.|++..
T Consensus 57 ~rw~lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 57 VRWQLVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEEEEE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred ceEEEEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 33445678877221 123466788888888 44444442 34899999999887
No 300
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=49.20 E-value=56 Score=24.20 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=30.3
Q ss_pred CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHH
Q 048209 70 GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALI 125 (349)
Q Consensus 70 G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~i 125 (349)
+-.++++|-+| ..++-.++++.+......-..+=++++|.+.|=--
T Consensus 67 ~~~~i~LDe~G----------k~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~ 112 (157)
T PRK00103 67 GARVIALDERG----------KQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSP 112 (157)
T ss_pred CCEEEEEcCCC----------CcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCH
Confidence 34689999886 45667788888877633322234568898877443
No 301
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=49.14 E-value=82 Score=25.19 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=26.8
Q ss_pred CCCeEEEEccCCC--chhhH-HHHHHHHhhCCceEEeeCCC
Q 048209 42 TGPVVLFIHGFPE--LWYSW-RNQLLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 42 ~~~~iv~~hG~~~--~~~~~-~~~~~~L~~~G~~v~~~D~~ 79 (349)
.+|.|+|++-.+. ....| ......+.+.|+.|..++..
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~ 70 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV 70 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 3578999998773 33443 34556777889998888765
No 302
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=47.85 E-value=2e+02 Score=25.57 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=44.1
Q ss_pred HHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCcc--cccee
Q 048209 63 LLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPD--RVKAL 140 (349)
Q Consensus 63 ~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~--~v~~l 140 (349)
+..+.+.+|.++.+|-+|.-. .-+.+.+.+..+.+......+++|--++-|.-+...+..+.+ .+.++
T Consensus 175 l~~~~~~~~DvViIDTaGr~~----------~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~ 244 (429)
T TIGR01425 175 VEKFKKENFDIIIVDTSGRHK----------QEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSV 244 (429)
T ss_pred HHHHHhCCCCEEEEECCCCCc----------chHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEE
Confidence 344445589999999997422 123455566666666655667777777777666655555432 36666
Q ss_pred eee
Q 048209 141 VNM 143 (349)
Q Consensus 141 vl~ 143 (349)
|+.
T Consensus 245 IlT 247 (429)
T TIGR01425 245 IIT 247 (429)
T ss_pred EEE
Confidence 664
No 303
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=47.83 E-value=1.4e+02 Score=23.51 Aligned_cols=59 Identities=29% Similarity=0.409 Sum_probs=34.9
Q ss_pred CeEEEEccCCCchhh-HHHHHHHHhhCCc-eEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEE
Q 048209 44 PVVLFIHGFPELWYS-WRNQLLYLSSRGY-RAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLV 117 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~-~~~~~~~L~~~G~-~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 117 (349)
..|++.||...++.. |.-+--.|.+.|| .|++...-|+- .++++..-++.-+.+.++|+
T Consensus 139 ~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP---------------~~d~vi~~l~~~~~~~v~L~ 199 (265)
T COG4822 139 ILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYP---------------LVDTVIEYLRKNGIKEVHLI 199 (265)
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCC---------------cHHHHHHHHHHcCCceEEEe
Confidence 367888998776654 4333345666788 56655544321 23455556666677766654
No 304
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=47.12 E-value=95 Score=25.94 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=50.5
Q ss_pred HHHHHHhhCCceEEeeCCCCCCCCCCCCCCC-cchHHHH--HHHHHHHHHHhCCce------eEEEEech----------
Q 048209 61 NQLLYLSSRGYRAIAPDLRGYGDTDAPPSVT-SYTALHL--VGDLIGLLDKLGIHQ------VFLVGHDW---------- 121 (349)
Q Consensus 61 ~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~------~~lvG~S~---------- 121 (349)
..+..|.++||.|+++|-.-.|......... .+-.-|+ -+-+.+++++...+- ...||-|+
T Consensus 15 Htv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NN 94 (329)
T COG1087 15 HTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNN 94 (329)
T ss_pred HHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccccccchhhhCHHHHHhhc
Confidence 4566778899999999998776654333110 1111111 123555666555442 33567775
Q ss_pred -HHHHHHHHHhhCccccceeeeeccCCCC
Q 048209 122 -GALIAWYFCLFRPDRVKALVNMSVPFPP 149 (349)
Q Consensus 122 -Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 149 (349)
+|.+.+.-+.+.- .|+.+|..+++...
T Consensus 95 v~gTl~Ll~am~~~-gv~~~vFSStAavY 122 (329)
T COG1087 95 VVGTLNLIEAMLQT-GVKKFIFSSTAAVY 122 (329)
T ss_pred hHhHHHHHHHHHHh-CCCEEEEecchhhc
Confidence 4555554444432 39999998876543
No 305
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=46.41 E-value=31 Score=28.62 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=22.6
Q ss_pred hCCceeEEEEechHHHHHHHHHhhCcccc
Q 048209 109 LGIHQVFLVGHDWGALIAWYFCLFRPDRV 137 (349)
Q Consensus 109 ~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v 137 (349)
.+..+-++.|.|.|+.+|..++....+.+
T Consensus 94 ~~l~~~~i~GtSaGAi~aa~~~~~~~~El 122 (298)
T cd07206 94 QDLLPRVISGSSAGAIVAALLGTHTDEEL 122 (298)
T ss_pred cCCCCCEEEEEcHHHHHHHHHHcCCcHHH
Confidence 45556679999999999999998654444
No 306
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=46.38 E-value=36 Score=27.16 Aligned_cols=31 Identities=26% Similarity=0.141 Sum_probs=22.6
Q ss_pred HHHHHhCCc--eeEEEEechHHHHHHHHHhhCc
Q 048209 104 GLLDKLGIH--QVFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 104 ~~~~~~~~~--~~~lvG~S~Gg~ia~~~a~~~p 134 (349)
+.+...++. .-.++|-|.|+.++..++...+
T Consensus 19 ~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 19 SLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 333444554 3479999999999999998754
No 307
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=45.63 E-value=26 Score=31.14 Aligned_cols=108 Identities=15% Similarity=0.055 Sum_probs=55.3
Q ss_pred CCeEEEEccCC---CchhhHHHHHHHHhhCC-ceEEeeCCC----C---C-CCCCCCCCCCcchHHHHHHHHHHHHHHhC
Q 048209 43 GPVVLFIHGFP---ELWYSWRNQLLYLSSRG-YRAIAPDLR----G---Y-GDTDAPPSVTSYTALHLVGDLIGLLDKLG 110 (349)
Q Consensus 43 ~~~iv~~hG~~---~~~~~~~~~~~~L~~~G-~~v~~~D~~----G---~-G~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (349)
..++|++-|.| +++..--.-.+.|+..+ .-|+.+++| | . |..+.+-...-++-.-..+.+++-+...|
T Consensus 135 ~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFG 214 (601)
T KOG4389|consen 135 LTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAFG 214 (601)
T ss_pred ceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeeccceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHhC
Confidence 34788888875 23222111234555442 334444544 1 1 22222221122222223455666666665
Q ss_pred C--ceeEEEEechHHH-HHHHHHhh-CccccceeeeeccCCCCC
Q 048209 111 I--HQVFLVGHDWGAL-IAWYFCLF-RPDRVKALVNMSVPFPPR 150 (349)
Q Consensus 111 ~--~~~~lvG~S~Gg~-ia~~~a~~-~p~~v~~lvl~~~~~~~~ 150 (349)
. +++.|+|.|.|+. +.+++.+= ....++..|+-++.....
T Consensus 215 Gnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~~p 258 (601)
T KOG4389|consen 215 GNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLNNP 258 (601)
T ss_pred CCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCCCC
Confidence 4 4799999999987 44443331 223477777777665543
No 308
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=44.88 E-value=48 Score=24.41 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=29.7
Q ss_pred ceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHH
Q 048209 71 YRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIA 126 (349)
Q Consensus 71 ~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia 126 (349)
-.|+++|-+| ..++..++++.+..+... +.+-.+++|.+.|=-=.
T Consensus 66 ~~~i~LDe~G----------k~~sS~~fA~~l~~~~~~-g~~i~FvIGGa~G~~~~ 110 (153)
T TIGR00246 66 AHVVTLDIPG----------KPWTTPQLADTLEKWKTD-GRDVTLLIGGPEGLSPT 110 (153)
T ss_pred CeEEEEcCCC----------CcCCHHHHHHHHHHHhcc-CCeEEEEEcCCCcCCHH
Confidence 4688888876 456667788888776433 33345678888775444
No 309
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=42.92 E-value=71 Score=29.99 Aligned_cols=43 Identities=16% Similarity=0.039 Sum_probs=30.8
Q ss_pred CCeEEEEccCCCc---hhhHHHHHHHHhhCCceEEeeCCCCCCCCC
Q 048209 43 GPVVLFIHGFPEL---WYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85 (349)
Q Consensus 43 ~~~iv~~hG~~~~---~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~ 85 (349)
+.+++++||.... ...-..+...|..+|..|-..-+|+-|.+-
T Consensus 551 ~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~ 596 (620)
T COG1506 551 KTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGF 596 (620)
T ss_pred CCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCC
Confidence 5789999998643 344566778888888887777777554443
No 310
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=42.87 E-value=31 Score=27.21 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=24.1
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCC
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~ 79 (349)
.+.-||++|=|.+.+ +..|+++||.|+.+|+-
T Consensus 37 ~~~rvLvPgCG~g~D-----~~~La~~G~~VvGvDls 68 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYD-----MLWLAEQGHDVVGVDLS 68 (218)
T ss_dssp TSEEEEETTTTTSCH-----HHHHHHTTEEEEEEES-
T ss_pred CCCeEEEeCCCChHH-----HHHHHHCCCeEEEEecC
Confidence 345688888887766 44677889999999963
No 311
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=42.75 E-value=2.2e+02 Score=24.70 Aligned_cols=85 Identities=19% Similarity=0.137 Sum_probs=55.8
Q ss_pred CeEEEEccCC-------CchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEE
Q 048209 44 PVVLFIHGFP-------ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFL 116 (349)
Q Consensus 44 ~~iv~~hG~~-------~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (349)
..||++||=. .+.+.|..+++.+.++| -+-.+|.--.|.-++ +++.+.-+..++... +-.+
T Consensus 172 ~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~-lip~~D~AYQGF~~G--------leeDa~~lR~~a~~~---~~~l 239 (396)
T COG1448 172 GSVVLLHGCCHNPTGIDPTEEQWQELADLIKERG-LIPFFDIAYQGFADG--------LEEDAYALRLFAEVG---PELL 239 (396)
T ss_pred CCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC-Ceeeeehhhhhhccc--------hHHHHHHHHHHHHhC---CcEE
Confidence 4799999843 34577999999999886 556677665554332 344444555554432 2377
Q ss_pred EEechHHHHHHHHHhhCccccceeeeecc
Q 048209 117 VGHDWGALIAWYFCLFRPDRVKALVNMSV 145 (349)
Q Consensus 117 vG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 145 (349)
|..|+.=..+ .|.+||-++++++.
T Consensus 240 va~S~SKnfg-----LYgERVGa~~vva~ 263 (396)
T COG1448 240 VASSFSKNFG-----LYGERVGALSVVAE 263 (396)
T ss_pred EEehhhhhhh-----hhhhccceeEEEeC
Confidence 8888665544 35688888888864
No 312
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.54 E-value=1.8e+02 Score=23.39 Aligned_cols=74 Identities=16% Similarity=0.085 Sum_probs=39.8
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEec
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHD 120 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S 120 (349)
.|++++............+..+.+.|..|+.+|..-.+....+. -..+....+..+.+.+-..|.+++.+++..
T Consensus 58 giIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~~~~~~~~~~~--V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~ 131 (273)
T cd06292 58 GVVFISSLHADTHADHSHYERLAERGLPVVLVNGRAPPPLKVPH--VSTDDALAMRLAVRHLVALGHRRIGFASGP 131 (273)
T ss_pred EEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcCCCCCCCCCCE--EEECcHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 45555543333333445566677778999999864322111111 222344455555555545577788877644
No 313
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=40.85 E-value=1.6e+02 Score=23.89 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=25.5
Q ss_pred CCCeEEEEccCCCchhh-HHHHHHHHhhCCce-EEeeCCC
Q 048209 42 TGPVVLFIHGFPELWYS-WRNQLLYLSSRGYR-AIAPDLR 79 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~-~~~~~~~L~~~G~~-v~~~D~~ 79 (349)
+.+.|++++-.++.... .....+.|.+.|+. |-.++.+
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 35789999977665433 45556677787884 5666664
No 314
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=40.76 E-value=35 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=22.0
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCC
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~ 79 (349)
.=||++|=|.+.+ +..|+++||.|+.+|+-
T Consensus 45 ~rvLvPgCGkg~D-----~~~LA~~G~~V~GvDlS 74 (226)
T PRK13256 45 SVCLIPMCGCSID-----MLFFLSKGVKVIGIELS 74 (226)
T ss_pred CeEEEeCCCChHH-----HHHHHhCCCcEEEEecC
Confidence 3567777666654 34678899999999974
No 315
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.14 E-value=1.6e+02 Score=24.05 Aligned_cols=63 Identities=27% Similarity=0.350 Sum_probs=43.1
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCce-EEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYR-AIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWG 122 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~-v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~G 122 (349)
|.++|.--.+--......+++.+++.|.. ++.+|+| .+..+++....+..|++.+.++.=+..
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP----------------~ee~~~~~~~~~~~gi~~I~lvaPtt~ 159 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLP----------------PEESDELLKAAEKHGIDPIFLVAPTTP 159 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCC----------------hHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 55666555555555566778888888754 8888987 134556777777888888887765544
No 316
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.14 E-value=54 Score=24.59 Aligned_cols=35 Identities=26% Similarity=0.206 Sum_probs=27.9
Q ss_pred CCCeEEEEccCCCchhhHHHHHHHHhhCCceEEee
Q 048209 42 TGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAP 76 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~ 76 (349)
..+.|+++-|-|.+..+=...++.|.++|+.|.++
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~ 58 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVY 58 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEE
Confidence 36788889999988887778899999999998883
No 317
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=40.13 E-value=96 Score=21.22 Aligned_cols=61 Identities=25% Similarity=0.191 Sum_probs=34.3
Q ss_pred EEEEccCCCchhhHHHHHHHHhhC-CceEEeeCC--CCCCCCCCCCCCCcchHHHHHHHHHHHHHHh
Q 048209 46 VLFIHGFPELWYSWRNQLLYLSSR-GYRAIAPDL--RGYGDTDAPPSVTSYTALHLVGDLIGLLDKL 109 (349)
Q Consensus 46 iv~~hG~~~~~~~~~~~~~~L~~~-G~~v~~~D~--~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (349)
+|++-|.+++.-+ .+++.|++. |+.++..|- +-.+....... .........+.+.+.++.+
T Consensus 1 vI~I~G~~gsGKS--T~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 64 (121)
T PF13207_consen 1 VIIISGPPGSGKS--TLAKELAERLGFPVISMDDLIREPGWIERDDD-EREYIDADIDLLDDILEQL 64 (121)
T ss_dssp EEEEEESTTSSHH--HHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTT-CCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHH--HHHHHHHHHHCCeEEEecceEEeccccccCcc-hhhHHHHHHHHHHHHHHhh
Confidence 5788898877653 345666665 899998887 44444422221 1111233344455555555
No 318
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=39.99 E-value=74 Score=22.57 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=10.3
Q ss_pred HHHHhhCCceEEee
Q 048209 63 LLYLSSRGYRAIAP 76 (349)
Q Consensus 63 ~~~L~~~G~~v~~~ 76 (349)
+..|++.|++|+++
T Consensus 101 ~~~L~~~GwrvlvV 114 (150)
T COG3727 101 IKRLQQLGWRVLVV 114 (150)
T ss_pred HHHHHHcCCeEEEE
Confidence 35788889987765
No 319
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=39.92 E-value=64 Score=28.07 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.2
Q ss_pred EEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCC
Q 048209 46 VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDT 84 (349)
Q Consensus 46 iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s 84 (349)
|||+|...- ..|+.+++.|.++|+.|..+-..+.+..
T Consensus 2 il~~~~~~p--~~~~~la~~L~~~G~~v~~~~~~~~~~~ 38 (396)
T cd03818 2 ILFVHQNFP--GQFRHLAPALAAQGHEVVFLTEPNAAPP 38 (396)
T ss_pred EEEECCCCc--hhHHHHHHHHHHCCCEEEEEecCCCCCC
Confidence 788887543 2378899999999999998877666543
No 320
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=39.85 E-value=1.2e+02 Score=23.58 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=34.2
Q ss_pred CCeEEEEccCCCch---hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 048209 43 GPVVLFIHGFPELW---YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDK 108 (349)
Q Consensus 43 ~~~iv~~hG~~~~~---~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~ 108 (349)
+.+|+++||-.... .......+.|.+.|.+|-.-.++|.|.+- ..+..+++.+++++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i---------~~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEI---------SPEELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-----------HHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC---------CHHHHHHHHHHHhh
Confidence 35899999987653 33455667888888877777777655432 23456666666653
No 321
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=38.58 E-value=1.7e+02 Score=23.42 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=33.1
Q ss_pred HHHHHHHhhC-CceEEeeCCCCCCCCCCCCCCC---cc---hHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHh
Q 048209 60 RNQLLYLSSR-GYRAIAPDLRGYGDTDAPPSVT---SY---TALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCL 131 (349)
Q Consensus 60 ~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~ 131 (349)
..++...+++ |-.++++-++ +|.|.....+. .. ++..++.|+..-+...|.++++++..--|-.-++..+.
T Consensus 43 ~~~a~~~a~~~~~~lv~P~i~-yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~ 120 (237)
T PF02633_consen 43 EAVAERAAERLGEALVLPPIP-YGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGFRRIVIVNGHGGNIAALEAAA 120 (237)
T ss_dssp HHHHHHHHHHHTHEEE---B---BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEeCCCc-cccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHH
Confidence 4455555554 2234444444 67665543222 22 44555556666666669999888755545443454444
No 322
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=38.52 E-value=1e+02 Score=26.34 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=29.3
Q ss_pred HHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCc
Q 048209 63 LLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIH 112 (349)
Q Consensus 63 ~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (349)
+..|.++||.|+.+-+.-+..... ...+..+..+|...+.+.+|+.
T Consensus 20 A~lLk~QGyeViGl~m~~~~~~~~----~~C~s~~d~~da~~va~~LGIp 65 (356)
T COG0482 20 AYLLKEQGYEVIGLFMKNWDEDGG----GGCCSEEDLRDAERVADQLGIP 65 (356)
T ss_pred HHHHHHcCCeEEEEEEEeeccCCC----CcCCchhHHHHHHHHHHHhCCc
Confidence 345678899999999886665111 1234445566667777777653
No 323
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=38.46 E-value=1.4e+02 Score=22.72 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=36.4
Q ss_pred CCeEEEEccCCC---chhhHHHHHHHHhhCCceEEeeCCCCC---CCCCCCCCCCcchHHHHHHHHHHHHH
Q 048209 43 GPVVLFIHGFPE---LWYSWRNQLLYLSSRGYRAIAPDLRGY---GDTDAPPSVTSYTALHLVGDLIGLLD 107 (349)
Q Consensus 43 ~~~iv~~hG~~~---~~~~~~~~~~~L~~~G~~v~~~D~~G~---G~s~~~~~~~~~~~~~~~~~~~~~~~ 107 (349)
+.++|+++-... ........+..|.+.|+.|+-+. +|+ |..... ..-+++++++.+...+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~-~g~la~~~~g~g---~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPK-EGLLACGDEGYG---ALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCC-CCccccCCccCC---CCCCHHHHHHHHHHHhc
Confidence 457777775322 22234667788989898887776 444 443322 23356777777666543
No 324
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=38.36 E-value=59 Score=26.17 Aligned_cols=20 Identities=20% Similarity=0.090 Sum_probs=17.8
Q ss_pred EEEEechHHHHHHHHHhhCc
Q 048209 115 FLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~~~p 134 (349)
.++|-|.|+.+|..++...+
T Consensus 34 ~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 34 RIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred EEEEEcHHHHHHHHHHhCCC
Confidence 78999999999999998754
No 325
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=38.07 E-value=1.6e+02 Score=21.45 Aligned_cols=30 Identities=13% Similarity=-0.120 Sum_probs=21.9
Q ss_pred cCCCchhhHHHHHHHHhhCCceEEeeCCCC
Q 048209 51 GFPELWYSWRNQLLYLSSRGYRAIAPDLRG 80 (349)
Q Consensus 51 G~~~~~~~~~~~~~~L~~~G~~v~~~D~~G 80 (349)
+.||.......+++.|.++|++|..+-...
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 445666678889999999999988885443
No 326
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=37.48 E-value=44 Score=29.65 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=23.8
Q ss_pred CCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccc
Q 048209 282 EVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFIN 331 (349)
Q Consensus 282 ~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 331 (349)
...|++++|+.|++...... ....... ...++||++|+.-
T Consensus 376 ~tnviFtNG~~DPW~~lgv~---------~~~~~~~-~~~~I~g~~Hc~D 415 (434)
T PF05577_consen 376 ATNVIFTNGELDPWRALGVT---------SDSSDSV-PAIVIPGGAHCSD 415 (434)
T ss_dssp --SEEEEEETT-CCGGGS-----------S-SSSSE-EEEEETT--TTGG
T ss_pred CCeEEeeCCCCCCcccccCC---------CCCCCCc-ccEEECCCeeecc
Confidence 45899999999999775522 1223344 5678999999854
No 327
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=37.26 E-value=2e+02 Score=22.49 Aligned_cols=85 Identities=18% Similarity=0.104 Sum_probs=47.9
Q ss_pred CCCeEEEEccCCCchhh-HHHHHHHHhhC-CceEEeeCCCCCCCCCCCC-----C---CCcchHHHHHHH-----HHHHH
Q 048209 42 TGPVVLFIHGFPELWYS-WRNQLLYLSSR-GYRAIAPDLRGYGDTDAPP-----S---VTSYTALHLVGD-----LIGLL 106 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~~-~~~~~~~L~~~-G~~v~~~D~~G~G~s~~~~-----~---~~~~~~~~~~~~-----~~~~~ 106 (349)
..+.|++++-.+..... ...+...|.+. |+.+..++... ...... + ...-+...+.+. +.+.+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~--~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l 107 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD--TEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAIL 107 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC--cccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHH
Confidence 45789999887775443 45566778888 99988887653 111000 0 000012222222 23333
Q ss_pred HHhCCceeEEEEechHHHHHHH
Q 048209 107 DKLGIHQVFLVGHDWGALIAWY 128 (349)
Q Consensus 107 ~~~~~~~~~lvG~S~Gg~ia~~ 128 (349)
+..-.+...++|.|.|+++...
T Consensus 108 ~~~~~~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 108 KAALERGVVYIGWSAGSNCWFP 129 (212)
T ss_pred HHHHHCCCEEEEECHhHHhhCC
Confidence 3321235789999999998765
No 328
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=37.25 E-value=60 Score=26.17 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=17.3
Q ss_pred EEEEechHHHHHHHHHhhCc
Q 048209 115 FLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~~~p 134 (349)
.+.|-|.|+.+|..++...+
T Consensus 33 ~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 33 KISGASAGALAACCLLCDLP 52 (245)
T ss_pred eEEEEcHHHHHHHHHHhCCc
Confidence 48999999999999998654
No 329
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=36.51 E-value=2.2e+02 Score=25.01 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=58.0
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCC-CCcc---hHHHHHHHHHHHHHHhCCceeEEEEec
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPS-VTSY---TALHLVGDLIGLLDKLGIHQVFLVGHD 120 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~lvG~S 120 (349)
+++++--..+..+.-....+.+.+.|+-|...|..++=..-...+ ...+ +++.+.+++......--..-.+|.|--
T Consensus 50 ~villSd~~G~~d~~~s~a~al~~~~Alv~~vd~~~ylaaL~~dd~ecvylisd~Ealsr~~Qr~a~~g~yr~PVl~g~g 129 (456)
T COG3946 50 LVILLSDEAGIGDQERSRADALLARGALVAPVDLGAYLAALGADDNECVYLISDFEALSREAQRAADLGVYRLPVLTGPG 129 (456)
T ss_pred eeEEEEcccChhhhhcchhHHHhhcCCeeeccccchhhhccccCCCcceEEehhHHHHhHHHHHHhhccCcccceEeecC
Confidence 444444333444444455677777788999999876533221111 1233 344444444433322223356788888
Q ss_pred hHHHHHHHHHhhCccc-cceeeeecc
Q 048209 121 WGALIAWYFCLFRPDR-VKALVNMSV 145 (349)
Q Consensus 121 ~Gg~ia~~~a~~~p~~-v~~lvl~~~ 145 (349)
-||.+++..++..|+. +.+.+.+.+
T Consensus 130 ~Gg~~A~asaaqSp~atlag~Vsldp 155 (456)
T COG3946 130 QGGTLAYASAAQSPDATLAGAVSLDP 155 (456)
T ss_pred CCcHHHHHHHhhChhhhhcCccCCCC
Confidence 9999999988887763 555555554
No 330
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=36.50 E-value=37 Score=31.12 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=33.7
Q ss_pred cc-CCcEEEEEecCCccccCCcchhhhcccccccc----cCCceeEEEecCCCccc
Q 048209 280 QI-EVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKY----VPYLQEVVVMEGVAHFI 330 (349)
Q Consensus 280 ~i-~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~gH~~ 330 (349)
++ ..|.++++|..|-++|.....+-+.. +.+. .... +++.+.++-|+-
T Consensus 552 ~L~GKPaIiVhGR~DaLlPvnh~Sr~Y~~--ln~~~eG~~s~l-rYyeV~naqHfD 604 (690)
T PF10605_consen 552 NLHGKPAIIVHGRSDALLPVNHTSRPYLG--LNRQVEGRASRL-RYYEVTNAQHFD 604 (690)
T ss_pred CcCCCceEEEecccceecccCCCchHHHH--Hhhhhcccccce-eEEEecCCeech
Confidence 44 78999999999999998766554422 2221 1334 788888988873
No 331
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=36.43 E-value=38 Score=27.61 Aligned_cols=15 Identities=27% Similarity=0.729 Sum_probs=12.4
Q ss_pred CCceeEEEEechHHH
Q 048209 110 GIHQVFLVGHDWGAL 124 (349)
Q Consensus 110 ~~~~~~lvG~S~Gg~ 124 (349)
....|+++|||+|..
T Consensus 233 ~i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 233 DIDEIIIYGHSLGEV 247 (270)
T ss_pred CCCEEEEEeCCCchh
Confidence 346899999999975
No 332
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.33 E-value=1.8e+02 Score=26.16 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=45.4
Q ss_pred HHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhh---------Cc
Q 048209 64 LYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLF---------RP 134 (349)
Q Consensus 64 ~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~---------~p 134 (349)
.+-..+||.|+.+|--|.-.. -..+-..+..+++.-..+.++.||.-+=|.=++.-+.. .|
T Consensus 460 ~~a~~~gfDVvLiDTAGR~~~----------~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~ 529 (587)
T KOG0781|consen 460 QEARNQGFDVVLIDTAGRMHN----------NAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTP 529 (587)
T ss_pred HHHHhcCCCEEEEeccccccC----------ChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCc
Confidence 444557999999998764222 22345566677766666788889988877765543332 24
Q ss_pred cccceeeeec
Q 048209 135 DRVKALVNMS 144 (349)
Q Consensus 135 ~~v~~lvl~~ 144 (349)
..|+++++.-
T Consensus 530 r~id~~~ltk 539 (587)
T KOG0781|consen 530 RLIDGILLTK 539 (587)
T ss_pred cccceEEEEe
Confidence 4577776643
No 333
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=35.61 E-value=26 Score=35.07 Aligned_cols=27 Identities=41% Similarity=0.427 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCceeEEEEechHHHH
Q 048209 99 VGDLIGLLDKLGIHQVFLVGHDWGALI 125 (349)
Q Consensus 99 ~~~~~~~~~~~~~~~~~lvG~S~Gg~i 125 (349)
--.+.+++..+|+++-.+||||.|-+-
T Consensus 569 QiaLtDlLs~lgi~PDGIvGHS~GElg 595 (2376)
T KOG1202|consen 569 QIALTDLLSCLGIRPDGIVGHSLGELG 595 (2376)
T ss_pred HHHHHHHHHhcCCCCCcccccccchhc
Confidence 345667788889999999999988543
No 334
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=35.48 E-value=70 Score=23.52 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.2
Q ss_pred ceeEEEEechHHHHHHHHH
Q 048209 112 HQVFLVGHDWGALIAWYFC 130 (349)
Q Consensus 112 ~~~~lvG~S~Gg~ia~~~a 130 (349)
.--.+.|.|.|+.++..++
T Consensus 28 ~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 28 CVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred CCCEEEEEcHHHHHHHHHh
Confidence 4456889999999999988
No 335
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=35.29 E-value=1.5e+02 Score=20.57 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=45.8
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCC-ceeEEEEechHH
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGI-HQVFLVGHDWGA 123 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lvG~S~Gg 123 (349)
.||.-|| .-+......++.+....-.+.++++. ...+.+++.+.+.++++..+. +.+.++--=+||
T Consensus 3 ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~GG 69 (122)
T cd00006 3 IIIATHG--GFASGLLNSAEMILGEQENVEAIDFP-----------PGESPDDLLEKIKAALAELDSGEGVLILTDLFGG 69 (122)
T ss_pred EEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeC-----------CCCCHHHHHHHHHHHHHHhCCCCcEEEEEeCCCC
Confidence 4777898 44455566666665433477777766 344678888889998988864 455555555566
Q ss_pred HHHH
Q 048209 124 LIAW 127 (349)
Q Consensus 124 ~ia~ 127 (349)
....
T Consensus 70 Sp~n 73 (122)
T cd00006 70 SPNN 73 (122)
T ss_pred CHHH
Confidence 5543
No 336
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=34.84 E-value=83 Score=28.89 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCceeEEEEe------chHHHHHHHHHhhCccccceeeeecc
Q 048209 99 VGDLIGLLDKLGIHQVFLVGH------DWGALIAWYFCLFRPDRVKALVNMSV 145 (349)
Q Consensus 99 ~~~~~~~~~~~~~~~~~lvG~------S~Gg~ia~~~a~~~p~~v~~lvl~~~ 145 (349)
...+.+.+.. .++|+++|| |.|+.+++..-+..-.+ .+.+.++|
T Consensus 327 s~al~d~i~e--~d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~dp 376 (655)
T COG3887 327 STALSDIIKE--SDNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLDP 376 (655)
T ss_pred HHHHHHHHhh--cCcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEECc
Confidence 3344444443 569999999 78999988766554333 66677775
No 337
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=34.44 E-value=2.9e+02 Score=23.46 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=48.6
Q ss_pred CeEEEEccCC----Cch-hhHHHHHHHHhh-CCceEEeeCCCCCCCCCCCCC------CCcch-----HHHHHHHHHHH-
Q 048209 44 PVVLFIHGFP----ELW-YSWRNQLLYLSS-RGYRAIAPDLRGYGDTDAPPS------VTSYT-----ALHLVGDLIGL- 105 (349)
Q Consensus 44 ~~iv~~hG~~----~~~-~~~~~~~~~L~~-~G~~v~~~D~~G~G~s~~~~~------~~~~~-----~~~~~~~~~~~- 105 (349)
..|+++-|.. ... ...-.+...|+. .+-+++++=.+|.|--.-... ....+ -..+.+.|...
T Consensus 32 ~lV~CfDGT~nrfg~qp~TNVv~Ly~sl~r~d~~~qv~yYd~GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~nI~~AY 111 (423)
T COG3673 32 RLVFCFDGTWNRFGAQPPTNVVLLYASLQRADGVTQVIYYDEGVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQNIREAY 111 (423)
T ss_pred eEEEEecCchhhcCCCCcchHHHHHHHHhcCCCceEEEEecCCcccccchhhHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4566666642 222 334445566666 577888887788875532210 00000 01122222222
Q ss_pred ---HHHh-CCceeEEEEechHHHHHHHHHhh
Q 048209 106 ---LDKL-GIHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 106 ---~~~~-~~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+.+. ..++|++.|+|-|+.+|--+|..
T Consensus 112 rFL~~~yepGD~Iy~FGFSRGAf~aRVlagm 142 (423)
T COG3673 112 RFLIFNYEPGDEIYAFGFSRGAFSARVLAGM 142 (423)
T ss_pred HHHHHhcCCCCeEEEeeccchhHHHHHHHHH
Confidence 2222 33589999999999998877764
No 338
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=34.18 E-value=58 Score=26.57 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=30.8
Q ss_pred CCCeEEEEccCCCch--hhHHHHHHHHhhCCceEEeeCCC
Q 048209 42 TGPVVLFIHGFPELW--YSWRNQLLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~--~~~~~~~~~L~~~G~~v~~~D~~ 79 (349)
..|+||++.|+-++. ..-..+...|..+|++|.++.-|
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~P 93 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAP 93 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCC
Confidence 358999999996554 55778888888899999999755
No 339
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.54 E-value=3.7e+02 Score=24.40 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=38.2
Q ss_pred CCeEEEEccCCCc---hhhHHHHHHHHhhCCceEEeeCCCC----CCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048209 43 GPVVLFIHGFPEL---WYSWRNQLLYLSSRGYRAIAPDLRG----YGDTDAPPSVTSYTALHLVGDLIGLLD 107 (349)
Q Consensus 43 ~~~iv~~hG~~~~---~~~~~~~~~~L~~~G~~v~~~D~~G----~G~s~~~~~~~~~~~~~~~~~~~~~~~ 107 (349)
+.++|+++..... .......+..|.+.|+.|+-++. | +|..... .--.++++++.+..++.
T Consensus 180 ~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~-g~lA~~g~~G~G---rm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 180 NRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNA-GEMAERGEAGVG---RMAEPLEIAAAAEALLR 247 (475)
T ss_pred CCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCC-CccccCCCcCCC---CCCCHHHHHHHHHHHHh
Confidence 3578888866544 33355677889999999886664 2 3333322 23356777777776663
No 340
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=32.91 E-value=2.3e+02 Score=21.76 Aligned_cols=93 Identities=11% Similarity=-0.081 Sum_probs=56.2
Q ss_pred eEEEeeCCeeEEEEeeCC----CC--eEEEEccCCCchhhHHHHHHHHhhCCceE------EeeCCCCCCCCCCCCCCCc
Q 048209 25 HTTVGTNGINMHVASIGT----GP--VVLFIHGFPELWYSWRNQLLYLSSRGYRA------IAPDLRGYGDTDAPPSVTS 92 (349)
Q Consensus 25 ~~~~~~~g~~~~~~~~g~----~~--~iv~~hG~~~~~~~~~~~~~~L~~~G~~v------~~~D~~G~G~s~~~~~~~~ 92 (349)
...+.++|.++.|..+.. ++ .|-+.-||....+.-.++...|.++|+.+ +.++..
T Consensus 37 ~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~d------------- 103 (184)
T TIGR01626 37 YGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINAD------------- 103 (184)
T ss_pred CceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECc-------------
Confidence 344556778888887764 44 34455578888888899999999889888 777632
Q ss_pred chHHHHHHHHHHHHHHhCCc-eeEEEEechHHHHHHHHH
Q 048209 93 YTALHLVGDLIGLLDKLGIH-QVFLVGHDWGALIAWYFC 130 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~lvG~S~Gg~ia~~~a 130 (349)
-........+.++++..+.+ ++..+...-.|.++..+.
T Consensus 104 d~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~g 142 (184)
T TIGR01626 104 DAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQ 142 (184)
T ss_pred cchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcC
Confidence 11223334556666665543 222333333454544443
No 341
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=32.90 E-value=1.9e+02 Score=23.98 Aligned_cols=80 Identities=11% Similarity=0.063 Sum_probs=44.6
Q ss_pred eEEEEccCCCchhh-HHHHHHHHhhCCc-------eEEeeCCCCCCCCCCCCCCCcchHHHHHH--------HHHHHHHH
Q 048209 45 VVLFIHGFPELWYS-WRNQLLYLSSRGY-------RAIAPDLRGYGDTDAPPSVTSYTALHLVG--------DLIGLLDK 108 (349)
Q Consensus 45 ~iv~~hG~~~~~~~-~~~~~~~L~~~G~-------~v~~~D~~G~G~s~~~~~~~~~~~~~~~~--------~~~~~~~~ 108 (349)
.-|++.|.|...-. -+.+...+.+.|. +++.+|..|-=..++.. ....-..+++ ++.++++.
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~--l~~~~~~~a~~~~~~~~~~L~e~i~~ 103 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKD--LTPFKKPFARKDEEKEGKSLLEVVKA 103 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCc--chHHHHHHHhhcCcccCCCHHHHHHh
Confidence 34556677655443 3444555555676 89999999864333321 0111122332 45555554
Q ss_pred hCCceeEEEEech-HHHHHHH
Q 048209 109 LGIHQVFLVGHDW-GALIAWY 128 (349)
Q Consensus 109 ~~~~~~~lvG~S~-Gg~ia~~ 128 (349)
++ +-+|+|-|- ||.+.-.
T Consensus 104 v~--ptvlIG~S~~~g~ft~e 122 (279)
T cd05312 104 VK--PTVLIGLSGVGGAFTEE 122 (279)
T ss_pred cC--CCEEEEeCCCCCCCCHH
Confidence 43 678999994 6755443
No 342
>PRK04435 hypothetical protein; Provisional
Probab=32.73 E-value=1.6e+02 Score=21.53 Aligned_cols=51 Identities=6% Similarity=0.003 Sum_probs=31.6
Q ss_pred EeeCCeeEEEEeeCCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCC
Q 048209 28 VGTNGINMHVASIGTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDL 78 (349)
Q Consensus 28 ~~~~g~~~~~~~~g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~ 78 (349)
.+..+.-..+.....+..+-+.-........+..+...+++.|.++..++.
T Consensus 52 ykykd~vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q 102 (147)
T PRK04435 52 YKYKDYVFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQ 102 (147)
T ss_pred hcCCCeeECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEE
Confidence 334444444444334444444444444566788899999999999998875
No 343
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=32.71 E-value=66 Score=25.63 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=44.5
Q ss_pred CCeEEEEccCCCch--hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHH-HHHHHHHHhCC-ceeEEEE
Q 048209 43 GPVVLFIHGFPELW--YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVG-DLIGLLDKLGI-HQVFLVG 118 (349)
Q Consensus 43 ~~~iv~~hG~~~~~--~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~lvG 118 (349)
.|+||++.|+-++. ..-..+...|..+|+.|.++.-|- .++... -+-.+-..+.. .++.++=
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt--------------~eE~~~p~lwRfw~~lP~~G~i~IF~ 95 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPS--------------DRERTQWYFQRYVQHLPAAGEIVLFD 95 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC--------------HHHHcChHHHHHHHhCCCCCeEEEEe
Confidence 48999999996554 557788888888999999988661 122222 23444455532 3777776
Q ss_pred echHHH
Q 048209 119 HDWGAL 124 (349)
Q Consensus 119 ~S~Gg~ 124 (349)
-|+=+-
T Consensus 96 rSwY~~ 101 (230)
T TIGR03707 96 RSWYNR 101 (230)
T ss_pred Cchhhh
Confidence 665443
No 344
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=32.65 E-value=1.8e+02 Score=24.56 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCceeEEEEechHH--HHHHHHHhhCccccceeeeeccC
Q 048209 98 LVGDLIGLLDKLGIHQVFLVGHDWGA--LIAWYFCLFRPDRVKALVNMSVP 146 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~lvG~S~Gg--~ia~~~a~~~p~~v~~lvl~~~~ 146 (349)
-...+..++...+..+++|||-|-== -|=..++..+|++|.++-.=+..
T Consensus 264 K~~~l~nil~~~p~~kfvLVGDsGE~DpeIYae~v~~fP~RIl~I~IRdvs 314 (373)
T COG4850 264 KGQSLRNILRRYPDRKFVLVGDSGEHDPEIYAEMVRCFPNRILGIYIRDVS 314 (373)
T ss_pred cccHHHHHHHhCCCceEEEecCCCCcCHHHHHHHHHhCccceeeEeeeecc
Confidence 33456778888888999999988221 24445667899999998776654
No 345
>PF13383 Methyltransf_22: Methyltransferase domain
Probab=32.56 E-value=88 Score=25.19 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=32.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCC
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRG 80 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G 80 (349)
...+|=+||.+.....|..+++.|.+.||+++..+.-.
T Consensus 192 ~Qi~iEiH~~~~~~~~~~~~l~~l~~~gfr~F~~e~N~ 229 (242)
T PF13383_consen 192 CQILIEIHGWPSEHREWYKLLQELEKAGFRLFNVEPNP 229 (242)
T ss_pred cEEEEEEEeCccchhHHHHHHHHHHHCCcEEEEecCCh
Confidence 67899999998888778899999999999999887543
No 346
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=32.31 E-value=61 Score=22.94 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=24.1
Q ss_pred EEEEccCCCchhhHHHHHHHHhhCCceEEeeCC
Q 048209 46 VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDL 78 (349)
Q Consensus 46 iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~ 78 (349)
++...|..++-.-+-.+++.|.++|++|...-.
T Consensus 2 li~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~ 34 (139)
T PF03033_consen 2 LIATGGTRGHVYPFLALARALRRRGHEVRLATP 34 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTT-EEEEEET
T ss_pred EEEEcCChhHHHHHHHHHHHHhccCCeEEEeec
Confidence 455566677777788889999999999975543
No 347
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=32.15 E-value=83 Score=25.51 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=18.0
Q ss_pred eEEEEechHHHHHHHHHhhCc
Q 048209 114 VFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 114 ~~lvG~S~Gg~ia~~~a~~~p 134 (349)
-.++|-|.|+.++..++...+
T Consensus 34 ~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 34 RMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred CEEEEEcHHHHHHHHHHhCCC
Confidence 468999999999999988655
No 348
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=31.85 E-value=57 Score=27.41 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.8
Q ss_pred CCceeEEEEechHHHHHHHHHh
Q 048209 110 GIHQVFLVGHDWGALIAWYFCL 131 (349)
Q Consensus 110 ~~~~~~lvG~S~Gg~ia~~~a~ 131 (349)
+.++..+.|||+|=+-|+.++.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 4678899999999999888776
No 349
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=31.56 E-value=45 Score=28.53 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.6
Q ss_pred EEEEechHHHHHHHHHhh
Q 048209 115 FLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~~ 132 (349)
.+.|.|.||.+|+.++..
T Consensus 44 lIaGTStGgIIAa~la~g 61 (344)
T cd07217 44 FVGGTSTGSIIAACIALG 61 (344)
T ss_pred EEEEecHHHHHHHHHHcC
Confidence 467999999999999864
No 350
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=31.43 E-value=3.1e+02 Score=22.87 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=52.4
Q ss_pred chhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCc
Q 048209 55 LWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 55 ~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p 134 (349)
+...++.+++.+.+.|.+-+.+- | |... ....+.++..+-++.+++..+.+-.+++|.+..-.-++..+...-
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~----G-stGE--~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~ 96 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAA----G-GTGE--FFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAE 96 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC----C-CCcC--cccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHH
Confidence 45567888899988887766642 1 2221 146678888888888888876554455665533334555554432
Q ss_pred c-ccceeeeeccCC
Q 048209 135 D-RVKALVNMSVPF 147 (349)
Q Consensus 135 ~-~v~~lvl~~~~~ 147 (349)
+ .+++++++.|.+
T Consensus 97 ~~Gadav~~~pP~y 110 (296)
T TIGR03249 97 KAGADGYLLLPPYL 110 (296)
T ss_pred HhCCCEEEECCCCC
Confidence 2 367776665543
No 351
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=31.38 E-value=82 Score=25.49 Aligned_cols=21 Identities=24% Similarity=-0.020 Sum_probs=17.8
Q ss_pred eEEEEechHHHHHHHHHhhCc
Q 048209 114 VFLVGHDWGALIAWYFCLFRP 134 (349)
Q Consensus 114 ~~lvG~S~Gg~ia~~~a~~~p 134 (349)
-.+.|-|.|+.++..++...+
T Consensus 38 ~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 38 RKIYGASAGALTATALVTGVC 58 (249)
T ss_pred CeEEEEcHHHHHHHHHHcCCC
Confidence 458899999999999988654
No 352
>PRK08105 flavodoxin; Provisional
Probab=31.19 E-value=1.8e+02 Score=21.24 Aligned_cols=65 Identities=17% Similarity=0.056 Sum_probs=36.3
Q ss_pred eEEEEc--cCCCchhhHHHHHHHHhhC--CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeE
Q 048209 45 VVLFIH--GFPELWYSWRNQLLYLSSR--GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVF 115 (349)
Q Consensus 45 ~iv~~h--G~~~~~~~~~~~~~~L~~~--G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (349)
.|+++. |-|.....+..+...|.+. ...=..+-..|.|.|.- ..+-..++.+.+.+..+|.+++.
T Consensus 52 vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~~~~avfGlGds~Y------~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 52 VLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPNLRYGVIALGDSSY------DNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred EEEEECCCCCCCCChhHHHHHHHHHhcCcccCCCEEEEEeeecCCH------HHHHHHHHHHHHHHHHCCCeEee
Confidence 444443 4445566677777776653 11111122345565531 23556778888888888876654
No 353
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=30.99 E-value=3.2e+02 Score=22.93 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=24.6
Q ss_pred EEEEccC--CCchhhHHHHHHHHhhCCceEEeeCCCC
Q 048209 46 VLFIHGF--PELWYSWRNQLLYLSSRGYRAIAPDLRG 80 (349)
Q Consensus 46 iv~~hG~--~~~~~~~~~~~~~L~~~G~~v~~~D~~G 80 (349)
+++++|. ||.......+++.|.+.|+.|..+...+
T Consensus 3 l~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 3 LYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred EEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 4455554 5555667788899998899988776544
No 354
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=30.64 E-value=2.8e+02 Score=22.09 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=37.0
Q ss_pred chhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeE-EEE
Q 048209 55 LWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVF-LVG 118 (349)
Q Consensus 55 ~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lvG 118 (349)
+......+++.+.++|..=+.+..-.-|+...+ .+...+++.+.+.+..++..++. +.|
T Consensus 44 h~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P-----~S~~~yl~~l~~~l~~~~~g~IAsv~G 103 (223)
T PF06415_consen 44 HIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPP-----KSALKYLEELEEKLAEIGIGRIASVSG 103 (223)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-T-----TTHHHHHHHHHHHHHHHTCTEEEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCc-----chHHHHHHHHHHHHHhhCCceEEEEec
Confidence 345577777888888866454544444555443 36778888899888888766654 444
No 355
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=30.38 E-value=64 Score=24.06 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=43.4
Q ss_pred EEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCC----CCCcchHHHHHHHHHHHHHHhCCceeEEEEechH
Q 048209 47 LFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPP----SVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWG 122 (349)
Q Consensus 47 v~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~G 122 (349)
|++-|.|+++..-+.++..|..+ |..-.+-+|..-.|.... -..+|.++.. ...-++.++.+--+|+|.|-.
T Consensus 44 vl~cGNGgSaadAqHfaael~gR-f~~eR~~lpaIaLt~dsS~lTai~NDy~yd~v---FsRqveA~g~~GDvLigISTS 119 (176)
T COG0279 44 VLACGNGGSAADAQHFAAELTGR-FEKERPSLPAIALSTDSSVLTAIANDYGYDEV---FSRQVEALGQPGDVLIGISTS 119 (176)
T ss_pred EEEECCCcchhhHHHHHHHHhhH-HHhcCCCCCeeEeecccHHHhhhhccccHHHH---HHHHHHhcCCCCCEEEEEeCC
Confidence 56679999888888888877654 444444444333331111 1134444443 234455666666788999887
Q ss_pred HH
Q 048209 123 AL 124 (349)
Q Consensus 123 g~ 124 (349)
|.
T Consensus 120 GN 121 (176)
T COG0279 120 GN 121 (176)
T ss_pred CC
Confidence 74
No 356
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=30.34 E-value=3.3e+02 Score=22.80 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=45.4
Q ss_pred CeEEEE-ccCCCchhhHHHHHHHHhhCCceEEee-CCCC---CCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEE
Q 048209 44 PVVLFI-HGFPELWYSWRNQLLYLSSRGYRAIAP-DLRG---YGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVG 118 (349)
Q Consensus 44 ~~iv~~-hG~~~~~~~~~~~~~~L~~~G~~v~~~-D~~G---~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG 118 (349)
|.++=+ .|+| +.......++.+.+.|..-+.+ |..+ +|.... ..-.+.+++++-|.+.++......+.++.
T Consensus 80 PviaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~---~~lv~~ee~~~kI~Aa~~a~~~~d~~IiA 155 (292)
T PRK11320 80 PLLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPN---KEIVSQEEMVDRIKAAVDARTDPDFVIMA 155 (292)
T ss_pred CEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCC---CcccCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 555544 4666 6667778889999999887877 6542 222211 13457888888888888765434455544
No 357
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=30.26 E-value=2e+02 Score=20.78 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=26.9
Q ss_pred eEEEEccCCCch--hhHHHHHHHHhhCCceEEeeCCCCCCCCCCC
Q 048209 45 VVLFIHGFPELW--YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAP 87 (349)
Q Consensus 45 ~iv~~hG~~~~~--~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~ 87 (349)
++|.+-|..++. ..-..++..|.++|++|.++=.-+||+..-.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d 45 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEID 45 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccC
Confidence 466777776554 3357788999999999986655556665543
No 358
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=30.16 E-value=1.4e+02 Score=23.59 Aligned_cols=80 Identities=20% Similarity=0.160 Sum_probs=44.0
Q ss_pred HHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCc--eeEEEEechHHHH----HHHHHhhCcc
Q 048209 62 QLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIH--QVFLVGHDWGALI----AWYFCLFRPD 135 (349)
Q Consensus 62 ~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lvG~S~Gg~i----a~~~a~~~p~ 135 (349)
.++.|.+.+..|+.+|+-|-...-+.--....+.+++.+.+.. +.+.+.+ +-+.+|-+.|+.- |+.+...++
T Consensus 102 ~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~-L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~- 179 (275)
T COG1856 102 DLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLL-LKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYE- 179 (275)
T ss_pred HHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHH-HHHcCceeceeEEEEeccCcccchHHHHHHHhcCC-
Confidence 3566777778899999976322211100012234444443332 2333443 5568899999864 666666665
Q ss_pred ccceeeeec
Q 048209 136 RVKALVNMS 144 (349)
Q Consensus 136 ~v~~lvl~~ 144 (349)
.+.+|+..
T Consensus 180 -~DalVl~v 187 (275)
T COG1856 180 -PDALVLVV 187 (275)
T ss_pred -CCeEEEEE
Confidence 45555544
No 359
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=30.05 E-value=80 Score=22.01 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCceeEEEEechHHHHHH
Q 048209 97 HLVGDLIGLLDKLGIHQVFLVGHDWGALIAW 127 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~ 127 (349)
.....+.-.+..++.+.++++||+--|++..
T Consensus 44 ~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a 74 (119)
T cd00382 44 DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA 74 (119)
T ss_pred cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH
Confidence 3566777788899999999999987776553
No 360
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=29.98 E-value=37 Score=27.01 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=26.8
Q ss_pred CCeEEEEccCCCch--hhHHHHHHHHhhCCceEEeeCCC
Q 048209 43 GPVVLFIHGFPELW--YSWRNQLLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 43 ~~~iv~~hG~~~~~--~~~~~~~~~L~~~G~~v~~~D~~ 79 (349)
.|+||++.|+.++. ..-..+...|..+|++|.++.-|
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~p 68 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKP 68 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS-
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCC
Confidence 36899999997665 44666777777889999999866
No 361
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=29.95 E-value=80 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=17.1
Q ss_pred EEEEechHHHHHHHHHhhCccc
Q 048209 115 FLVGHDWGALIAWYFCLFRPDR 136 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~~~p~~ 136 (349)
.+.|-|.|+.+|..++. .|++
T Consensus 34 ~i~GtSaGAl~aa~~a~-~~~~ 54 (246)
T cd07222 34 RFAGASAGSLVAAVLLT-APEK 54 (246)
T ss_pred EEEEECHHHHHHHHHhc-ChHH
Confidence 68999999999999984 3443
No 362
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=29.71 E-value=1.9e+02 Score=19.88 Aligned_cols=33 Identities=15% Similarity=-0.023 Sum_probs=25.1
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeC
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D 77 (349)
+|+++.....+......+...|.+.|+.+..++
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~ 34 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLG 34 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcC
Confidence 466666666666667777788889999998885
No 363
>PRK06824 translation initiation factor Sui1; Validated
Probab=29.71 E-value=2e+02 Score=20.14 Aligned_cols=69 Identities=23% Similarity=0.165 Sum_probs=47.4
Q ss_pred CeeEEEEeeCC-CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchH-HHHHHHHHHHHHHh
Q 048209 32 GINMHVASIGT-GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTA-LHLVGDLIGLLDKL 109 (349)
Q Consensus 32 g~~~~~~~~g~-~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~-~~~~~~~~~~~~~~ 109 (349)
-.++++...|. +..|-+|-|+.........++..|.+. -|.|.|-... ...+ -|..+.+.+++...
T Consensus 42 ~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk---------~gcGGtvkd~---~IeiQGD~r~~v~~~L~~~ 109 (118)
T PRK06824 42 IVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRR---------CGTGGTLKDG---VIEIQGDHVELLLAELLKR 109 (118)
T ss_pred eEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHH---------hcCCceEecC---EEEEcCcHHHHHHHHHHHC
Confidence 35566666664 789999999998888899999999876 3466654432 1112 24556677777777
Q ss_pred CCc
Q 048209 110 GIH 112 (349)
Q Consensus 110 ~~~ 112 (349)
|.+
T Consensus 110 G~~ 112 (118)
T PRK06824 110 GFK 112 (118)
T ss_pred CCe
Confidence 754
No 364
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=29.39 E-value=2.1e+02 Score=21.39 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=39.1
Q ss_pred CchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCC-----CcchHHHHHHHHHHHHHHhCCc
Q 048209 54 ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSV-----TSYTALHLVGDLIGLLDKLGIH 112 (349)
Q Consensus 54 ~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 112 (349)
-+...|+...+.+.+.|.+.+.+-.-|++...--++. ......+.++.+.+..+..|.+
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmk 80 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMK 80 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCE
Confidence 4567799999999999999888877777665422210 1123445666666666666655
No 365
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=28.77 E-value=45 Score=27.96 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=15.0
Q ss_pred EEEEechHHHHHHHHHh
Q 048209 115 FLVGHDWGALIAWYFCL 131 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~ 131 (349)
.+.|.|.||.+|+.++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 47799999999999886
No 366
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=28.76 E-value=95 Score=21.64 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=10.5
Q ss_pred HHHhhCCceEEee
Q 048209 64 LYLSSRGYRAIAP 76 (349)
Q Consensus 64 ~~L~~~G~~v~~~ 76 (349)
..|.+.|+.|+.+
T Consensus 101 ~~L~~~Gw~Vlr~ 113 (117)
T TIGR00632 101 SRLQELGWRVLRV 113 (117)
T ss_pred HHHHHCcCEEEEE
Confidence 4688889999876
No 367
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.61 E-value=3.7e+02 Score=23.67 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=30.8
Q ss_pred HHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHH
Q 048209 64 LYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFC 130 (349)
Q Consensus 64 ~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a 130 (349)
..+.+.+|.|+.+|--|.-. .-..+.+.+.++.+.+....+++|=-+.=|.-|..-|
T Consensus 177 ~~fKke~fdvIIvDTSGRh~----------qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHK----------QEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred HHHHhcCCcEEEEeCCCchh----------hhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence 45666789999999765322 2233455555555655555555444333333333333
No 368
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.00 E-value=2.4e+02 Score=20.54 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=26.7
Q ss_pred CCCCeEEEE-ccCCCchhhHHHHHHHHhhCCceEEeeCCC
Q 048209 41 GTGPVVLFI-HGFPELWYSWRNQLLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 41 g~~~~iv~~-hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~ 79 (349)
|.+|.|++. .|.-++...-.-+.+.|+..||.|+..=+.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 556655554 576666666666778889999999876543
No 369
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=27.79 E-value=1.4e+02 Score=24.21 Aligned_cols=34 Identities=21% Similarity=0.045 Sum_probs=27.7
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeC
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D 77 (349)
..|+++-|-|.+..+=.-.++.|...|++|.++-
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEE
Confidence 4577888888887776778899999999988776
No 370
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=27.74 E-value=55 Score=27.09 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=16.5
Q ss_pred EEEEechHHHHHHHHHhhC
Q 048209 115 FLVGHDWGALIAWYFCLFR 133 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~~~ 133 (349)
.++|.|.||.+|+.++...
T Consensus 37 ~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 37 LFAGTSAGSLIALGLALGY 55 (288)
T ss_pred EEEEeCHHHHHHHHHHcCc
Confidence 5789999999999998754
No 371
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=27.37 E-value=1.3e+02 Score=22.61 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=23.9
Q ss_pred EEEEccCCCchhhHHHHHHHHhhCCceEEeeC
Q 048209 46 VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 46 iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D 77 (349)
-|++.|.|.+...-..+...|...|..+..++
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 63 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVG 63 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 47888888877666666777777788888774
No 372
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=27.21 E-value=1e+02 Score=22.31 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCceeEEEEechHHHH
Q 048209 97 HLVGDLIGLLDKLGIHQVFLVGHDWGALI 125 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~lvG~S~Gg~i 125 (349)
+....+.-.+..++.+.++++||+-=|++
T Consensus 41 ~~~~sl~~av~~l~~~~IiV~gHt~Cg~~ 69 (142)
T cd03379 41 DAIRSLVVSVYLLGTREIIVIHHTDCGML 69 (142)
T ss_pred hHHHHHHHHHHHhCCCEEEEEeecCCcce
Confidence 45666777788899999999999854443
No 373
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=26.80 E-value=1.3e+02 Score=18.74 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=17.4
Q ss_pred CCeEEEEccCC-CchhhHHHHHHHHh-hCCceEEee
Q 048209 43 GPVVLFIHGFP-ELWYSWRNQLLYLS-SRGYRAIAP 76 (349)
Q Consensus 43 ~~~iv~~hG~~-~~~~~~~~~~~~L~-~~G~~v~~~ 76 (349)
.|.++++||.. ...+. ++...+ ++|..++.+
T Consensus 31 ~~~~~lvhGga~~GaD~---iA~~wA~~~gv~~~~~ 63 (71)
T PF10686_consen 31 HPDMVLVHGGAPKGADR---IAARWARERGVPVIRF 63 (71)
T ss_pred CCCEEEEECCCCCCHHH---HHHHHHHHCCCeeEEe
Confidence 37788999977 44443 333333 336655543
No 374
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=26.76 E-value=2.7e+02 Score=23.46 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=29.3
Q ss_pred HHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048209 63 LLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGI 111 (349)
Q Consensus 63 ~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (349)
+..|+++||.|..+=++..-.-+... .....+...+|...+.+++++
T Consensus 22 a~Ll~~~g~~v~gv~M~nWd~~de~~--s~cp~e~D~~da~~Vc~~LnI 68 (377)
T KOG2805|consen 22 ARLLAARGYNVTGVFMKNWDSLDEFG--SQCPAERDWKDAKRVCKQLNI 68 (377)
T ss_pred HHHHHhcCCCeeEEeeeccccccccc--cCCCchhhHHHHHHHHHHhCC
Confidence 34567889999999888762222211 234455566667777777654
No 375
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=26.49 E-value=2.4e+02 Score=20.94 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=24.6
Q ss_pred HHHHHHHHHHh--CCceeEEEEechHHHHHHHHHhhCccccceeeeecc
Q 048209 99 VGDLIGLLDKL--GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSV 145 (349)
Q Consensus 99 ~~~~~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 145 (349)
-+.+.++++.+ ..+++.+.|-|..|..-+.++...++.|..++=.++
T Consensus 54 ~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np 102 (160)
T PF08484_consen 54 KAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNP 102 (160)
T ss_dssp HHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-G
T ss_pred HHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCCh
Confidence 33444444443 336799999999999888888876666777765554
No 376
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=26.44 E-value=87 Score=24.96 Aligned_cols=29 Identities=24% Similarity=0.063 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhCCceeEEEEechHH
Q 048209 95 ALHLVGDLIGLLDKLGIHQVFLVGHDWGA 123 (349)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg 123 (349)
.+|...++...+......+.-+++.|||-
T Consensus 158 ~~Dvl~~l~~~~~~~~~~~~p~i~isMG~ 186 (229)
T PRK01261 158 NKKFVDDLQYILMKKDEKYKPIVFIPMGR 186 (229)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 44455555555444332334466888888
No 377
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=26.39 E-value=3e+02 Score=21.11 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=36.1
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHHhCCc
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDL-IGLLDKLGIH 112 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 112 (349)
.++++++-..-....-...+..|.+.|+.|+-+.. | .=.+ ..+++++++.+ ..+++.+|.+
T Consensus 116 ~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P~~-g--~~a~-----p~~~~~~~~~~v~~~~~~l~~~ 177 (185)
T PRK06029 116 RRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPPVP-A--FYHR-----PQTLEDMVDQTVGRVLDLFGIE 177 (185)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHHCcCEEECCCc-c--cccC-----CCCHHHHHHHHHHHHHHhcCCC
Confidence 45666663211222234566788888888887664 2 2222 23688888865 5567888765
No 378
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=26.37 E-value=1.5e+02 Score=23.01 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=30.9
Q ss_pred HHHHHHhCCceeEEEE-echHHHHHHHHHhhCccccceeeeeccC
Q 048209 103 IGLLDKLGIHQVFLVG-HDWGALIAWYFCLFRPDRVKALVNMSVP 146 (349)
Q Consensus 103 ~~~~~~~~~~~~~lvG-~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 146 (349)
.+..+.+...++.++| ..+|+.++..++.. .+..+++++.-
T Consensus 13 ~~~q~~L~~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D 54 (200)
T TIGR02354 13 PKIVQKLEQATVAICGLGGLGSNVAINLARA---GIGKLILVDFD 54 (200)
T ss_pred HHHHHHHhCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCC
Confidence 4445666677899998 55899999888774 37788888875
No 379
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=26.26 E-value=58 Score=24.47 Aligned_cols=21 Identities=29% Similarity=0.169 Sum_probs=16.6
Q ss_pred ceeEEEEechHHHHHHHHHhh
Q 048209 112 HQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 112 ~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
.--.+.|-|.||.+|+.++..
T Consensus 27 ~~d~i~GtS~Gal~a~~~~~~ 47 (204)
T PF01734_consen 27 RFDVISGTSAGALNAALLALG 47 (204)
T ss_dssp T-SEEEEECCHHHHHHHHHTC
T ss_pred CccEEEEcChhhhhHHHHHhC
Confidence 345688999999999887775
No 380
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=26.15 E-value=1.7e+02 Score=24.52 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.3
Q ss_pred CCeEEEEccCCCchhhH
Q 048209 43 GPVVLFIHGFPELWYSW 59 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~ 59 (349)
+|.++=+||++|+...|
T Consensus 109 KPLvLSfHG~tGTGKN~ 125 (344)
T KOG2170|consen 109 KPLVLSFHGWTGTGKNY 125 (344)
T ss_pred CCeEEEecCCCCCchhH
Confidence 78889999999887654
No 381
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=26.14 E-value=3.3e+02 Score=21.45 Aligned_cols=38 Identities=13% Similarity=-0.027 Sum_probs=23.1
Q ss_pred CCCeEEEEccCCCchh-hHHHHHHHHhhCCce-EEeeCCC
Q 048209 42 TGPVVLFIHGFPELWY-SWRNQLLYLSSRGYR-AIAPDLR 79 (349)
Q Consensus 42 ~~~~iv~~hG~~~~~~-~~~~~~~~L~~~G~~-v~~~D~~ 79 (349)
.++.|++++-.+.... ....+.+.+.+.|.. +..++..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~ 67 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVID 67 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccC
Confidence 3577888877665433 345556667776764 5555554
No 382
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.97 E-value=1.4e+02 Score=25.43 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCeEEEEccCCC------chhhHHHHHHHHhhCCceEEee
Q 048209 43 GPVVLFIHGFPE------LWYSWRNQLLYLSSRGYRAIAP 76 (349)
Q Consensus 43 ~~~iv~~hG~~~------~~~~~~~~~~~L~~~G~~v~~~ 76 (349)
+|-|++.||.+. +.+.|..+++.|.++|+.|+.+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~ 214 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLF 214 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 478888898332 3466889999999998777765
No 383
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=25.91 E-value=1.7e+02 Score=22.38 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=20.6
Q ss_pred EEeeCCCCCCCCCCCCCC-CcchHH----HHHHHHHHHHHHhCC
Q 048209 73 AIAPDLRGYGDTDAPPSV-TSYTAL----HLVGDLIGLLDKLGI 111 (349)
Q Consensus 73 v~~~D~~G~G~s~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 111 (349)
++++| ||||..++-... ....-. +++..+...|+..|.
T Consensus 2 ~I~iD-pGHGg~d~GA~~~~g~~E~~~~l~ia~~l~~~L~~~G~ 44 (189)
T TIGR02883 2 IIVID-PGHGGIDGGAVGKDGTLEKDITLEIALKLKDYLQEQGA 44 (189)
T ss_pred EEEEe-CCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHhCCC
Confidence 57777 899987654421 112222 344455556666554
No 384
>PRK07451 translation initiation factor Sui1; Validated
Probab=25.81 E-value=2.4e+02 Score=19.69 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=44.5
Q ss_pred EEEEeeCC-CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchH-HHHHHHHHHHHHHhCCc
Q 048209 35 MHVASIGT-GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTA-LHLVGDLIGLLDKLGIH 112 (349)
Q Consensus 35 ~~~~~~g~-~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 112 (349)
+.....+. +..|-+|-|+.........++..|... -|+|.+-... ...+ -|..+.+.++|...|.+
T Consensus 42 I~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k---------~gcGGtvkd~---~IelQGD~r~~v~~~L~~~Gf~ 109 (115)
T PRK07451 42 VQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQ---------CGSGGTVKDN---TIEIQGDHRQKILEILIKLGYK 109 (115)
T ss_pred EEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH---------hcCCceEcCC---EEEEcCcHHHHHHHHHHHCCCe
Confidence 33334453 689999999998888899999999775 3566665433 1222 24556778888877764
No 385
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=25.76 E-value=3.9e+02 Score=22.21 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHHHHHhhCCce--EEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHH
Q 048209 60 RNQLLYLSSRGYR--AIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIA 126 (349)
Q Consensus 60 ~~~~~~L~~~G~~--v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia 126 (349)
...++.+.+.|.. =+.+|. |+|.+.... .-.++.+.+..+ ..+| ..+++|+|-=+.+.
T Consensus 166 ~~~i~~a~~~GI~~~~IilDP-GiGF~k~~~-----~n~~ll~~l~~l-~~lg--~Pilvg~SRKsfig 225 (282)
T PRK11613 166 IEQIARCEAAGIAKEKLLLDP-GFGFGKNLS-----HNYQLLARLAEF-HHFN--LPLLVGMSRKSMIG 225 (282)
T ss_pred HHHHHHHHHcCCChhhEEEeC-CCCcCCCHH-----HHHHHHHHHHHH-HhCC--CCEEEEecccHHHH
Confidence 3344556667875 778885 677543211 122233344333 3333 56899999555544
No 386
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=25.66 E-value=1.1e+02 Score=23.10 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=20.9
Q ss_pred EEEccCCCch--hhHHHHHHHHhhCCceEEeeCC
Q 048209 47 LFIHGFPELW--YSWRNQLLYLSSRGYRAIAPDL 78 (349)
Q Consensus 47 v~~hG~~~~~--~~~~~~~~~L~~~G~~v~~~D~ 78 (349)
.+..+-||.. ..-..++..|+++|++|+.+|+
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred EEEcCCCCccHHHHHHHHHhcccccccccccccc
Confidence 3444444433 2345677888899999999997
No 387
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=25.50 E-value=1e+02 Score=24.37 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=13.0
Q ss_pred HHHHhhCCceEEeeCCC
Q 048209 63 LLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 63 ~~~L~~~G~~v~~~D~~ 79 (349)
+..|+++|+.|+++|.-
T Consensus 52 a~~LA~~G~~V~avD~s 68 (218)
T PRK13255 52 MLWLAEQGHEVLGVELS 68 (218)
T ss_pred HHHHHhCCCeEEEEccC
Confidence 33556789999999963
No 388
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.49 E-value=3.9e+02 Score=22.05 Aligned_cols=72 Identities=13% Similarity=0.050 Sum_probs=42.4
Q ss_pred HHHHhh-CCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEE-EechHHHHHHHHHhhCc-cccce
Q 048209 63 LLYLSS-RGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLV-GHDWGALIAWYFCLFRP-DRVKA 139 (349)
Q Consensus 63 ~~~L~~-~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv-G~S~Gg~ia~~~a~~~p-~~v~~ 139 (349)
++.+.+ .++.++.+|-+|....+ ....+.+.++++......++|| .-++++.-+...+..+. -.+++
T Consensus 146 l~~l~~~~~~D~ViIDt~Gr~~~~----------~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~ 215 (270)
T PRK06731 146 LTYFKEEARVDYILIDTAGKNYRA----------SETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDG 215 (270)
T ss_pred HHHHHhcCCCCEEEEECCCCCcCC----------HHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCE
Confidence 344443 36899999998753321 2344455556655544455654 45667766666666543 35777
Q ss_pred eeeec
Q 048209 140 LVNMS 144 (349)
Q Consensus 140 lvl~~ 144 (349)
+|+.-
T Consensus 216 ~I~TK 220 (270)
T PRK06731 216 IVFTK 220 (270)
T ss_pred EEEEe
Confidence 77643
No 389
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=25.47 E-value=2.8e+02 Score=25.03 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=52.7
Q ss_pred CeEEEEccCCCch-hhHHHHHHHHhhCCceEEeeCCCCCCCCCCC-------CC----------------CCcchHHHHH
Q 048209 44 PVVLFIHGFPELW-YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAP-------PS----------------VTSYTALHLV 99 (349)
Q Consensus 44 ~~iv~~hG~~~~~-~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~-------~~----------------~~~~~~~~~~ 99 (349)
.-.+.+-|+.-.. ...+.+.+.|...+.+.+-+++++-|+-... +. ....+-.+.-
T Consensus 97 qKkl~~dG~~LQ~NyVvrHF~Effsd~~R~~mfWSLa~Ad~raqRlAYL~ddP~FAgLs~D~r~lLs~ivvrq~teaEIE 176 (831)
T PRK15180 97 QKKIMAYGFCLQINYLTRHFYEFFSQTERACMYWSLATQGNRHKLLAYLKDDPCFAGMSEDDRALLSNINVEQMDEHAIE 176 (831)
T ss_pred eeeEEeccchhhHHHHHHHHHHHhhhcchhhhhhhcccccchhHHHHHhhcChhhhhhhHhHHHHHHhhHhhcccHHHHH
Confidence 4567788876443 4567778888887878778888887765431 10 0112344555
Q ss_pred HHHHHHHHHhCCceeEEEEec
Q 048209 100 GDLIGLLDKLGIHQVFLVGHD 120 (349)
Q Consensus 100 ~~~~~~~~~~~~~~~~lvG~S 120 (349)
+|+.++..-+|.++|.+|-|.
T Consensus 177 eDmmeIVqLLGk~rVvfVTHV 197 (831)
T PRK15180 177 QDMMEIVQLLGRDRVMFMTHV 197 (831)
T ss_pred HHHHHHHHHhCCCcEEEEEee
Confidence 688888888998899999986
No 390
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=25.38 E-value=3.6e+02 Score=24.51 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=40.1
Q ss_pred CCeEEEEccCCCc---hhhHHHHHHHHhhCCceEEeeCCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeE
Q 048209 43 GPVVLFIHGFPEL---WYSWRNQLLYLSSRGYRAIAPDLRGY-GDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVF 115 (349)
Q Consensus 43 ~~~iv~~hG~~~~---~~~~~~~~~~L~~~G~~v~~~D~~G~-G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (349)
+.-++|.+|=..+ .+.-...+..|.+.|+.+..++-... |....... ..-.....++...+.++..+.+.++
T Consensus 260 ~~~v~~f~GC~~~~~~~~~~~a~~~vL~~~G~~~~~~~~~~CCG~p~~~~G-~~~~~~~~~~~ni~~~~~~~~~~IV 335 (486)
T PRK06259 260 KLRVAFFTGCLVDYRLQEVGKDAIRVLNAHGISVIIPKNQVCCGSPLIRTG-QTDVAEELKKKNLEIFNKLDVDTVV 335 (486)
T ss_pred CeEEEEECCccccccchHHHHHHHHHHHHCCCeEecCCCCCcccHHHHhcC-CHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4468888874432 33445667788888999987643222 22111111 1223445566666666666766544
No 391
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=25.07 E-value=1.1e+02 Score=23.33 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCceeEEEEechHHHHHHHH
Q 048209 98 LVGDLIGLLDKLGIHQVFLVGHDWGALIAWYF 129 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~ 129 (349)
....++-.+..++.+.++++|||-=|.+...+
T Consensus 67 ~~asleyAv~~L~v~~IvV~GHs~CGav~a~~ 98 (182)
T cd00883 67 CLSVLQYAVDVLKVKHIIVCGHYGCGGVKAAL 98 (182)
T ss_pred hhhhHHHHHHhcCCCEEEEecCCCchHHHHHH
Confidence 45567777888999999999999777665444
No 392
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=25.04 E-value=2.7e+02 Score=20.17 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCce-eEEEEechHHHHHHHHHhhCccccc
Q 048209 60 RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQ-VFLVGHDWGALIAWYFCLFRPDRVK 138 (349)
Q Consensus 60 ~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lvG~S~Gg~ia~~~a~~~p~~v~ 138 (349)
..+...|.+.||.|+-+-.- +. ...++.+++..+...+..-..++ +.+.|...|-.++ |.++|. |+
T Consensus 15 ~~i~~~L~~~g~eV~D~G~~-----~~----~~~dy~~~a~~va~~V~~~~~d~GIliCgtGiG~~ia---ANK~~G-Ir 81 (140)
T PF02502_consen 15 EAIKEYLEEKGYEVIDFGTY-----SE----DSVDYPDFAEKVAEAVASGEADRGILICGTGIGMSIA---ANKVPG-IR 81 (140)
T ss_dssp HHHHHHHHHTTEEEEEESES-----ST----ST--HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHH---HHTSTT---
T ss_pred HHHHHHHHHCCCEEEEeCCC-----CC----CCCCHHHHHHHHHHHHHcccCCeEEEEcCCChhhhhH---hhcCCC-EE
Confidence 34567888889987755422 11 13456677777776666544444 4455666665554 667775 44
Q ss_pred eeeeec
Q 048209 139 ALVNMS 144 (349)
Q Consensus 139 ~lvl~~ 144 (349)
+..+.+
T Consensus 82 Aa~~~d 87 (140)
T PF02502_consen 82 AALCSD 87 (140)
T ss_dssp EEE-SS
T ss_pred EEeeCC
Confidence 444433
No 393
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=24.83 E-value=2.7e+02 Score=22.87 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=22.2
Q ss_pred eEEEEccCCCchhh--HHHHHHHHhhCCceEEeeCCCCCC
Q 048209 45 VVLFIHGFPELWYS--WRNQLLYLSSRGYRAIAPDLRGYG 82 (349)
Q Consensus 45 ~iv~~hG~~~~~~~--~~~~~~~L~~~G~~v~~~D~~G~G 82 (349)
|+|++-|+++++.. ...+...|.+.++.|..++--..+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~ 41 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG 41 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 57889999987654 355667777788898888744333
No 394
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=24.37 E-value=5.2e+02 Score=23.13 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=39.8
Q ss_pred HHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCcc--ccce
Q 048209 62 QLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPD--RVKA 139 (349)
Q Consensus 62 ~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~--~v~~ 139 (349)
....+...+|.++.+|-+|....+ +...+.+..+.+.+....+++|--++-|.-+...|..+-+ .+.+
T Consensus 174 al~~~~~~~~DvVIIDTaGr~~~d----------~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~g 243 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAGRLQID----------EELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTG 243 (428)
T ss_pred HHHHHHhcCCCEEEEeCCCccccC----------HHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCE
Confidence 334444568999999999754321 2244445555555544555666555555555555444322 3566
Q ss_pred eeee
Q 048209 140 LVNM 143 (349)
Q Consensus 140 lvl~ 143 (349)
+|+.
T Consensus 244 iIlT 247 (428)
T TIGR00959 244 VVLT 247 (428)
T ss_pred EEEe
Confidence 6654
No 395
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.12 E-value=87 Score=21.73 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=18.8
Q ss_pred hHHHHHHHHhhCCceEEeeCCC
Q 048209 58 SWRNQLLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 58 ~~~~~~~~L~~~G~~v~~~D~~ 79 (349)
.+..+++.|++.||.|++.|.-
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecc
Confidence 4667889999999999999965
No 396
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=24.06 E-value=1.5e+02 Score=26.64 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=37.7
Q ss_pred ccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCcccch-h-----------cHHHHHHHHHHHHH
Q 048209 280 QIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFINQ-E-----------KAEEVGAHIYEFIK 347 (349)
Q Consensus 280 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~-e-----------~~~~~~~~i~~fl~ 347 (349)
--...|++.+|..|++-.... ......++ ....+.|++|+.-+ . ....+.+.+..||+
T Consensus 431 ~~atnVvf~NG~~DPWh~LG~---------~~st~~~~-~~~li~gtsHCaDMyp~~~sD~~~L~~aR~~i~~~l~~wl~ 500 (514)
T KOG2182|consen 431 YNATNVVFPNGSLDPWHALGL---------QNSTDSSV-VSILINGTSHCADMYPARDSDSPSLKAARNRIDQNLARWLH 500 (514)
T ss_pred cCcceEEecCCCCCchhhhcc---------ccCCCCCc-eEEEecCCccccccCCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence 336789999999999865332 11333455 67889999998632 1 23456666666665
No 397
>PRK15219 carbonic anhydrase; Provisional
Probab=23.97 E-value=84 Score=25.35 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCCceeEEEEechHHHHHHHH
Q 048209 98 LVGDLIGLLDKLGIHQVFLVGHDWGALIAWYF 129 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~ 129 (349)
....++-.+..++.+.++++|||-=|.+...+
T Consensus 129 ~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~ 160 (245)
T PRK15219 129 LLGSMEFACAVAGAKVVLVMGHTACGAVKGAI 160 (245)
T ss_pred hhhHHHHHHHHcCCCEEEEecCCcchHHHHHH
Confidence 45567778888999999999999766655443
No 398
>PRK09936 hypothetical protein; Provisional
Probab=23.94 E-value=3.4e+02 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHhhCCceEEeeCCCCCCCCC
Q 048209 55 LWYSWRNQLLYLSSRGYRAIAPDLRGYGDTD 85 (349)
Q Consensus 55 ~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~ 85 (349)
+...|+.+.+.+...|++.+.+-+-++|.++
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~ 66 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQWTRYGDAD 66 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeeccCCC
Confidence 4567999999999999999999999999884
No 399
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=23.78 E-value=3.3e+02 Score=20.61 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=15.5
Q ss_pred CCceeEEEEec-hHHHHHHHHHhhCcc
Q 048209 110 GIHQVFLVGHD-WGALIAWYFCLFRPD 135 (349)
Q Consensus 110 ~~~~~~lvG~S-~Gg~ia~~~a~~~p~ 135 (349)
|..+-+++||| ||..+ .+-.-+|+
T Consensus 64 Gf~PDvI~~H~GWGe~L--flkdv~P~ 88 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETL--FLKDVFPD 88 (171)
T ss_pred CCCCCEEEEcCCcchhh--hHHHhCCC
Confidence 77788899998 44433 33444664
No 400
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=23.69 E-value=1.1e+02 Score=29.43 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=18.0
Q ss_pred CCceeEEEEechHHHHHHHHHh
Q 048209 110 GIHQVFLVGHDWGALIAWYFCL 131 (349)
Q Consensus 110 ~~~~~~lvG~S~Gg~ia~~~a~ 131 (349)
+..--++.|.|.||+++..+|.
T Consensus 64 ~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 64 RVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred CCCCceEEeeCHHHHHHHHHHc
Confidence 4445578899999999998886
No 401
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=23.67 E-value=4.2e+02 Score=21.90 Aligned_cols=56 Identities=14% Similarity=-0.031 Sum_probs=35.7
Q ss_pred EEEccCCCch-hhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048209 47 LFIHGFPELW-YSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLD 107 (349)
Q Consensus 47 v~~hG~~~~~-~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~ 107 (349)
|+.+..+... ..+....+.|.+.||.|...+.-...... ..-+.++-++|+.+++.
T Consensus 3 iiapSs~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~-----~a~s~~~Ra~dL~~a~~ 59 (282)
T cd07025 3 IVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDGY-----LAGTDEERAADLNAAFA 59 (282)
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhCCCEEEeccchhhhcCc-----cCCCHHHHHHHHHHHhh
Confidence 4455555555 66777788999999999988765432211 22355666777766654
No 402
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=23.61 E-value=4.3e+02 Score=21.98 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=48.8
Q ss_pred CeEEEE-ccCCCchhhHHHHHHHHhhCCceEEee-CCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEE
Q 048209 44 PVVLFI-HGFPELWYSWRNQLLYLSSRGYRAIAP-DLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVG 118 (349)
Q Consensus 44 ~~iv~~-hG~~~~~~~~~~~~~~L~~~G~~v~~~-D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG 118 (349)
|.+|=+ +|+|. ...-...++.+.+.|..-+.+ |.-+--++.+.+...-++.+++++-|.+..+.-....+++++
T Consensus 80 Pv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A 155 (289)
T COG2513 80 PVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIA 155 (289)
T ss_pred ceEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEe
Confidence 555555 56776 666677788888888765555 555433333333335778999999999999887545555553
No 403
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.50 E-value=96 Score=27.87 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=15.2
Q ss_pred EEEechHHHHHHHHHhh
Q 048209 116 LVGHDWGALIAWYFCLF 132 (349)
Q Consensus 116 lvG~S~Gg~ia~~~a~~ 132 (349)
++|.|.||++|..+..+
T Consensus 454 ICGvSTG~ilA~~Lg~k 470 (763)
T KOG4231|consen 454 ICGVSTGGILAIALGVK 470 (763)
T ss_pred HhccCchHHHHHHHHhc
Confidence 68999999999988775
No 404
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=23.36 E-value=1.1e+02 Score=25.73 Aligned_cols=31 Identities=26% Similarity=0.165 Sum_probs=19.9
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhh
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+..+++.+.....-++|.|||+.+++.+..-
T Consensus 124 l~~i~~w~~~~~~s~LgICwGaQa~a~algG 154 (302)
T PRK05368 124 LKEILDWAKTHVTSTLFICWAAQAALYHLYG 154 (302)
T ss_pred HHHHHHHHHHcCCCEEEEcHHHHHHHHHcCC
Confidence 3444433332346689999999998876653
No 405
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=23.21 E-value=1.4e+02 Score=24.21 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.9
Q ss_pred EEEEechHHHHHHHHHhh
Q 048209 115 FLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~~ 132 (349)
.++|.|.||.+|+.++..
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 478999999999998886
No 406
>PRK06490 glutamine amidotransferase; Provisional
Probab=23.19 E-value=4e+02 Score=21.42 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCceeEEEEechHHHHHHHHH
Q 048209 97 HLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFC 130 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a 130 (349)
.+...+.++++..-..++=++|.|+|..+...+.
T Consensus 70 ~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~al 103 (239)
T PRK06490 70 DFIRREIDWISVPLKENKPFLGICLGAQMLARHL 103 (239)
T ss_pred hHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHc
Confidence 4555556666544223456899999998766553
No 407
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=23.11 E-value=3.2e+02 Score=20.30 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=41.4
Q ss_pred HHHHhhCCc-eEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEec-hHHHHHHHHHhhCc
Q 048209 63 LLYLSSRGY-RAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHD-WGALIAWYFCLFRP 134 (349)
Q Consensus 63 ~~~L~~~G~-~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S-~Gg~ia~~~a~~~p 134 (349)
.+.+...|. .|+.++.+.. ..++.+.+++.+.++++..+ ..++|+|+| .|.-++-++|.+..
T Consensus 44 ~~~~~~~Gad~v~~~~~~~~---------~~~~~~~~a~al~~~i~~~~-p~~Vl~~~t~~g~~la~rlAa~L~ 107 (168)
T cd01715 44 AAALKAYGADKVLVAEDPAL---------AHYLAEPYAPALVALAKKEK-PSHILAGATSFGKDLAPRVAAKLD 107 (168)
T ss_pred HHHHHhcCCCEEEEecChhh---------cccChHHHHHHHHHHHHhcC-CCEEEECCCccccchHHHHHHHhC
Confidence 444555565 5666654321 24567788888999888766 467788766 66678888888743
No 408
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=23.02 E-value=1.1e+02 Score=24.00 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=12.9
Q ss_pred HHHHhhCCceEEeeCC
Q 048209 63 LLYLSSRGYRAIAPDL 78 (349)
Q Consensus 63 ~~~L~~~G~~v~~~D~ 78 (349)
+..|+++|+.|+++|.
T Consensus 49 a~~LA~~G~~V~gvD~ 64 (213)
T TIGR03840 49 LAWLAEQGHRVLGVEL 64 (213)
T ss_pred HHHHHhCCCeEEEEeC
Confidence 3456788999999996
No 409
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=22.92 E-value=47 Score=25.12 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=20.7
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhh
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+..+++.....-.-.+|-|||+..|+.++.-
T Consensus 87 l~~i~dwa~~~v~stl~iCWgaqaal~~~yG 117 (175)
T cd03131 87 LTEILDWAKTHVTSTLFSCWAAMAALYYFYG 117 (175)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHcC
Confidence 4444444332335678999999999988764
No 410
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=22.84 E-value=99 Score=27.15 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=34.0
Q ss_pred ccCCcEEEEEecCCccccCCcchhhhcccccccccCCceeEEEecCCCccc---chhcHHHHHHHHHHHHHh
Q 048209 280 QIEVPVKFIVGDQDLVYNNKGMKEYIHDGGFKKYVPYLQEVVVMEGVAHFI---NQEKAEEVGAHIYEFIKK 348 (349)
Q Consensus 280 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~---~~e~~~~~~~~i~~fl~~ 348 (349)
.-..||+++.|.-|.+-+.- ...+. +.+....=.. =.+-+||.|+.. ..++.+.+.+.|.+||..
T Consensus 187 ~~p~P~VIv~gGlDs~qeD~--~~l~~-~~l~~rGiA~-LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~ 254 (411)
T PF06500_consen 187 EKPYPTVIVCGGLDSLQEDL--YRLFR-DYLAPRGIAM-LTVDMPGQGESPKWPLTQDSSRLHQAVLDYLAS 254 (411)
T ss_dssp SS-EEEEEEE--TTS-GGGG--HHHHH-CCCHHCT-EE-EEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCcchhHHHH--HHHHH-HHHHhCCCEE-EEEccCCCcccccCCCCcCHHHHHHHHHHHHhc
Confidence 45789999999999986532 11110 1122222222 345578888753 345567888999999864
No 411
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.81 E-value=4e+02 Score=21.27 Aligned_cols=72 Identities=18% Similarity=0.058 Sum_probs=38.1
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWG 122 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~G 122 (349)
..||+....... ...+.+.+.|..|+.+|....+...-+. -..+.......+...+...|.+++.+++...+
T Consensus 57 dgiii~~~~~~~-----~~~~~~~~~~ipvV~i~~~~~~~~~~~~--v~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~ 128 (270)
T cd06296 57 DGVILVTPELTS-----AQRAALRRTGIPFVVVDPAGDPDADVPS--VGATNWAGGLAATEHLLELGHRRIGFITGPPD 128 (270)
T ss_pred CEEEEecCCCCh-----HHHHHHhcCCCCEEEEecccCCCCCCCE--EEeCcHHHHHHHHHHHHHcCCCcEEEEcCCCc
Confidence 356665543322 2356667778999999975432111111 12223334444444444457778888876554
No 412
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=22.79 E-value=4.6e+02 Score=22.03 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=43.1
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEeeCC----CCCCC-CCCC----------------CCCCcchHHHHHHHHH
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDL----RGYGD-TDAP----------------PSVTSYTALHLVGDLI 103 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~----~G~G~-s~~~----------------~~~~~~~~~~~~~~~~ 103 (349)
.||++-|-.++.-. .++-.|++++-.++..|- +|..- |.++ .....++..++.++..
T Consensus 5 ~ii~I~GpTasGKS--~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~ 82 (300)
T PRK14729 5 KIVFIFGPTAVGKS--NILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEAL 82 (300)
T ss_pred cEEEEECCCccCHH--HHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHH
Confidence 46677776555433 233345544447888883 33311 1111 1225678899999999
Q ss_pred HHHHHh--CCceeEEEEec
Q 048209 104 GLLDKL--GIHQVFLVGHD 120 (349)
Q Consensus 104 ~~~~~~--~~~~~~lvG~S 120 (349)
..++.+ ..+..+|||.|
T Consensus 83 ~~i~~i~~~gk~PilvGGT 101 (300)
T PRK14729 83 KIIKELRQQKKIPIFVGGS 101 (300)
T ss_pred HHHHHHHHCCCCEEEEeCc
Confidence 998876 22345778765
No 413
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.71 E-value=1.8e+02 Score=24.35 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCC----ceeEEEEec--hHHHHHHHHHhhC
Q 048209 99 VGDLIGLLDKLGI----HQVFLVGHD--WGALIAWYFCLFR 133 (349)
Q Consensus 99 ~~~~~~~~~~~~~----~~~~lvG~S--~Gg~ia~~~a~~~ 133 (349)
+..+.+++++.+. +++.++|.| ||..+|..+..+.
T Consensus 143 p~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~g 183 (301)
T PRK14194 143 PSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAH 183 (301)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCC
Confidence 3456667776653 589999986 9999999988653
No 414
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=22.64 E-value=2.1e+02 Score=25.12 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=35.6
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCC
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDT 84 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s 84 (349)
..++|-+--+|.+...-....+.|.+.||.|++|.--|.|..
T Consensus 184 ~kp~I~iTmfGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~ 225 (403)
T PF06792_consen 184 DKPLIGITMFGVTTPCVDAIRERLEEEGYEVLVFHATGTGGR 225 (403)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHHhcCCeEEEEcCCCCchH
Confidence 456777878888888888888999999999999999999854
No 415
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=22.64 E-value=93 Score=26.18 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=44.4
Q ss_pred CCcEEEEEecCCccccCCcchhhhcccc-----------------------cccccCCceeEEEecCCCcccchhcHHHH
Q 048209 282 EVPVKFIVGDQDLVYNNKGMKEYIHDGG-----------------------FKKYVPYLQEVVVMEGVAHFINQEKAEEV 338 (349)
Q Consensus 282 ~~Pvl~i~G~~D~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~gH~~~~e~~~~~ 338 (349)
.+.|.+..|..|-+|.......+++... ..+...|. .+..++.+||+...++|+..
T Consensus 325 Gv~V~VynG~lDlIc~T~G~~AWv~~l~w~~~p~f~~~~r~~~~~s~~l~gy~ktyknl-~f~wilraghmvp~Dnp~~a 403 (414)
T KOG1283|consen 325 GVNVTVYNGQLDLICATMGTEAWVEKLEWSAKPSFQVSPRVGITVSRVLEGYEKTYKNL-SFFWILRAGHMVPADNPAAA 403 (414)
T ss_pred CceEEEEecccchhhcccchhhhhhheecCCCCccccceeeeccceeecchhhhhhccc-eeEEeecccCcccCCCHHHH
Confidence 4889999999999998776666553211 22334444 67778889999999999887
Q ss_pred HHHHHH
Q 048209 339 GAHIYE 344 (349)
Q Consensus 339 ~~~i~~ 344 (349)
...++.
T Consensus 404 ~hmlr~ 409 (414)
T KOG1283|consen 404 SHMLRH 409 (414)
T ss_pred hhheee
Confidence 765543
No 416
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=22.53 E-value=4.1e+02 Score=21.37 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=47.3
Q ss_pred CeEEEE-ccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEE
Q 048209 44 PVVLFI-HGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVG 118 (349)
Q Consensus 44 ~~iv~~-hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG 118 (349)
|.++=+ .|+|.+.......++.+.+.|..-+.++=..+|. . .....+.+++++-|.+.++......+.+++
T Consensus 71 Pv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~--~--~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~A 142 (238)
T PF13714_consen 71 PVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGH--G--GKQLVSPEEMVAKIRAAVDARRDPDFVIIA 142 (238)
T ss_dssp EEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTT--S--TT-B--HHHHHHHHHHHHHHHSSTTSEEEE
T ss_pred cEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCC--C--CCceeCHHHHHHHHHHHHHhccCCeEEEEE
Confidence 444444 4677768888899999999998777775444552 1 114568999999999999887655566665
No 417
>PRK06849 hypothetical protein; Provisional
Probab=22.50 E-value=2.9e+02 Score=24.05 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=38.0
Q ss_pred HHHHHHHHhhCCceEEeeCCCCCCCCCC---CC-----CCCcchHHHHHHHHHHHHHHhCCceeEEEEec
Q 048209 59 WRNQLLYLSSRGYRAIAPDLRGYGDTDA---PP-----SVTSYTALHLVGDLIGLLDKLGIHQVFLVGHD 120 (349)
Q Consensus 59 ~~~~~~~L~~~G~~v~~~D~~G~G~s~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S 120 (349)
-..+++.|.++|++|+++|......+.. .. .....+...+++.+.++++..+. .+++-+.+
T Consensus 17 ~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~i-d~vIP~~e 85 (389)
T PRK06849 17 ALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENI-DLLIPTCE 85 (389)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCC-CEEEECCh
Confidence 3567889999999999999864332210 00 00223456778888888887764 34444444
No 418
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=22.44 E-value=3.5e+02 Score=20.42 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHH
Q 048209 65 YLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGA 123 (349)
Q Consensus 65 ~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg 123 (349)
.|.+.|+..+.+|.=+.=-... ...-..++.+.+.++.+..+.+++.++.-|.|.
T Consensus 35 ~Lk~~Gik~li~DkDNTL~~~~----~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs 89 (168)
T PF09419_consen 35 HLKKKGIKALIFDKDNTLTPPY----EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGS 89 (168)
T ss_pred hhhhcCceEEEEcCCCCCCCCC----cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 3888899999999754311111 112234555666666666666689999999863
No 419
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=22.25 E-value=54 Score=29.30 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=26.1
Q ss_pred CCceeEEEEechHHHHHHHHHhhCccccceeee
Q 048209 110 GIHQVFLVGHDWGALIAWYFCLFRPDRVKALVN 142 (349)
Q Consensus 110 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl 142 (349)
+.-+-++.|-|+||.+|..++.+.-+.++.+.-
T Consensus 200 dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~ 232 (543)
T KOG2214|consen 200 DLLPNIISGSSAGAIVASLVGVRSNEELKQLLT 232 (543)
T ss_pred cccchhhcCCchhHHHHHHHhhcchHHHHHHhc
Confidence 344677899999999999999988777776653
No 420
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=22.14 E-value=3e+02 Score=19.82 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=28.3
Q ss_pred CCeEEEEccCCC----chhhHHHHHHHHhhCCc---eEEeeCCCC
Q 048209 43 GPVVLFIHGFPE----LWYSWRNQLLYLSSRGY---RAIAPDLRG 80 (349)
Q Consensus 43 ~~~iv~~hG~~~----~~~~~~~~~~~L~~~G~---~v~~~D~~G 80 (349)
..+||..|++++ .+..+..+...|...|| +|+.++..|
T Consensus 17 ~vvVv~~~~~~~~~~l~~~s~~~l~~eL~~~GYSylNIfs~~~~~ 61 (146)
T PF04763_consen 17 NVVVVCNHSWPGPESLPPESVSLLIEELEESGYSYLNIFSCSSES 61 (146)
T ss_pred cEEEEEeCCcccccCCChHHHHHHHHHHhhcCCceEEEEEEcCCC
Confidence 457788888765 45668888999999886 577777653
No 421
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=22.09 E-value=3.6e+02 Score=20.48 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=25.3
Q ss_pred CCeEEEEccCCCc---hhhHHHHHHHHhhCCceEEeeCC
Q 048209 43 GPVVLFIHGFPEL---WYSWRNQLLYLSSRGYRAIAPDL 78 (349)
Q Consensus 43 ~~~iv~~hG~~~~---~~~~~~~~~~L~~~G~~v~~~D~ 78 (349)
+.++++++.+... ....+..++.|.+.|+.|+-++.
T Consensus 112 ~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 112 ETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred CCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 3578888765432 33457778899999998887764
No 422
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.08 E-value=1.8e+02 Score=23.01 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=25.6
Q ss_pred CCCCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCC
Q 048209 41 GTGPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLR 79 (349)
Q Consensus 41 g~~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~ 79 (349)
++.|..|++-|-....-. ..++..|++.||.|++--.+
T Consensus 4 ~~~~k~VlItgcs~GGIG-~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 4 QSQPKKVLITGCSSGGIG-YALAKEFARNGYLVYATARR 41 (289)
T ss_pred ccCCCeEEEeecCCcchh-HHHHHHHHhCCeEEEEEccc
Confidence 345667777665433332 36788999999999987644
No 423
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=21.92 E-value=3.7e+02 Score=20.52 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=34.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHHhCCc
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDL-IGLLDKLGIH 112 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 112 (349)
.++++++--.-....-...+..|.+.|+.++-+.. |+ =. ..-+++++++.+ ..+++.+|.+
T Consensus 113 ~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P~~-g~--~~-----~p~~~~~~~~~i~~~~l~~lg~~ 174 (181)
T TIGR00421 113 RKLVLVPRETPLNSIHLENMLRLSRMGAIILPPMP-AF--YT-----RPKSVEDMIDFIVGRVLDQLGIE 174 (181)
T ss_pred CCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECCCC-cc--cC-----CCCCHHHHHHHHHHHHHHHcCCC
Confidence 45566653221122235566788888988876653 32 11 123677877765 4566777754
No 424
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=21.82 E-value=64 Score=27.06 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.6
Q ss_pred EEEEechHHHHHHHHHh
Q 048209 115 FLVGHDWGALIAWYFCL 131 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~ 131 (349)
.+.|.|.||.+|+.++.
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 46799999999998874
No 425
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.82 E-value=2.1e+02 Score=21.52 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=22.5
Q ss_pred EEEEccCCCchhhHHHHHHHHhhCCceEEeeC
Q 048209 46 VLFIHGFPELWYSWRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 46 iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D 77 (349)
-|++-|.|.+...-..+...|...|..+..++
T Consensus 35 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 66 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVG 66 (179)
T ss_pred eEEEEecChhHHHHHHHHHHHHhCCCeEEEeC
Confidence 36677888776655666667777788888764
No 426
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=21.81 E-value=1.2e+02 Score=24.79 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=22.2
Q ss_pred EEEEechHHHHHHHHHhhCccccceeee
Q 048209 115 FLVGHDWGALIAWYFCLFRPDRVKALVN 142 (349)
Q Consensus 115 ~lvG~S~Gg~ia~~~a~~~p~~v~~lvl 142 (349)
.++|.|+|+.-...+.++.+.+-++++.
T Consensus 43 ~~~GvSAGA~n~~aYls~Q~gra~~~~~ 70 (292)
T COG4667 43 LVVGVSAGALNLVAYLSKQRGRARRVIV 70 (292)
T ss_pred eeeeecHhHHhHHHHhhcCCchHHHHHH
Confidence 4789999999998888888876555553
No 427
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=21.67 E-value=2.5e+02 Score=20.40 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhCCceeEEEEechHHHHHHHH
Q 048209 96 LHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYF 129 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~ 129 (349)
......+.-.+..++.+.++++||+-=|++...+
T Consensus 39 ~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~ 72 (153)
T PF00484_consen 39 DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAAL 72 (153)
T ss_dssp HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHH
T ss_pred cchhhheeeeeecCCCCEEEEEcCCCchHHHHHH
Confidence 4566677778888999999999999777666433
No 428
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=21.62 E-value=1.4e+02 Score=23.70 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=21.0
Q ss_pred CCeEEEEccCCCch-----hhHHHHHHHHhhCCceEEee
Q 048209 43 GPVVLFIHGFPELW-----YSWRNQLLYLSSRGYRAIAP 76 (349)
Q Consensus 43 ~~~iv~~hG~~~~~-----~~~~~~~~~L~~~G~~v~~~ 76 (349)
++.|++.+|.+... +.|..+++.|.+.|+.|+.+
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~ 143 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLL 143 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE-
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEE
Confidence 56788888877643 44777888998887777654
No 429
>PRK11460 putative hydrolase; Provisional
Probab=21.62 E-value=3.6e+02 Score=21.36 Aligned_cols=40 Identities=18% Similarity=0.041 Sum_probs=24.0
Q ss_pred CCeEEEEccCCCch---hhHHHHHHHHhhCCceEEeeCCCCCC
Q 048209 43 GPVVLFIHGFPELW---YSWRNQLLYLSSRGYRAIAPDLRGYG 82 (349)
Q Consensus 43 ~~~iv~~hG~~~~~---~~~~~~~~~L~~~G~~v~~~D~~G~G 82 (349)
.++|+++||.-... ..-..+.+.|.+.|..+-..-++|-|
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~g 190 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLG 190 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 46788888876543 33345566777767665555455433
No 430
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=21.52 E-value=1.6e+02 Score=24.94 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=29.8
Q ss_pred CCeEEEEccCCCchhh-----HHHHHHHHhhCCceE---------EeeCCCCCCCC
Q 048209 43 GPVVLFIHGFPELWYS-----WRNQLLYLSSRGYRA---------IAPDLRGYGDT 84 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~-----~~~~~~~L~~~G~~v---------~~~D~~G~G~s 84 (349)
...+|++.|+|+.+.. +..+.+.|.++|..+ ..+|+.|+.-+
T Consensus 248 ~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~~i~i~~~~~G~~~Tsl~m~G~sit 303 (323)
T COG2376 248 DEVAVLVNGLGATPLMELYILYNRVARLLAAKGITIERTLVGNYMTSLDMAGFSIT 303 (323)
T ss_pred CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEeeecceecccccCCceEE
Confidence 4689999999988744 566677888877553 35667666554
No 431
>PF14789 THDPS_M: Tetrahydrodipicolinate N-succinyltransferase middle; PDB: 3R5A_F 3R5B_A 3R5C_B 3R5D_D 3FSY_C 3FSX_A 2RIJ_A.
Probab=21.40 E-value=1.6e+02 Score=16.08 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=20.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCC--ceEEeeC
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRG--YRAIAPD 77 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G--~~v~~~D 77 (349)
|.|++....+...+.+...--.|...| ..|..+|
T Consensus 2 ~NVaWT~~GP~~~~~~~~~r~~lr~~g~~~~V~~VD 37 (41)
T PF14789_consen 2 PNVAWTNAGPCEPEDFEENRLRLRARGRPLTVYSVD 37 (41)
T ss_dssp --EEEETTEEEEHHHHHHHHHHHHHTT----EEEEE
T ss_pred CeeeecCCCCcCHHHHHHHHHHHHhCCCCcEEEEEc
Confidence 346666666666677776666677776 6677777
No 432
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=21.36 E-value=4.8e+02 Score=21.65 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=23.4
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCCceEEe
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRGYRAIA 75 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~ 75 (349)
.+++++|.++....|..+.+.|.+.|+.+..
T Consensus 2 ~~~I~N~~~~~~~~~~~~~~~l~~~g~~~~v 32 (293)
T TIGR03702 2 ALLILNGKQADNEDVREAVGDLRDEGIQLHV 32 (293)
T ss_pred EEEEEeCCccchhHHHHHHHHHHHCCCeEEE
Confidence 4678888777767788888889888876433
No 433
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.33 E-value=5.3e+02 Score=22.20 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=45.6
Q ss_pred eEEEEccCCCchhhHHHHHHHHhhCC--ceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechH
Q 048209 45 VVLFIHGFPELWYSWRNQLLYLSSRG--YRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWG 122 (349)
Q Consensus 45 ~iv~~hG~~~~~~~~~~~~~~L~~~G--~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~G 122 (349)
-.++++|+..+.+....+++.+...+ .+++-++.. |.+.-. ..+ .+.++.+.++++..|+. +.+..|+|
T Consensus 259 ey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~--~~~~~~----~ps-~e~i~~f~~~L~~~Gi~--vtvR~~~G 329 (345)
T PRK14457 259 EYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPI--DEVEFQ----RPS-PKRIQAFQRVLEQRGVA--VSVRASRG 329 (345)
T ss_pred EEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCC--CCCCCC----CCC-HHHHHHHHHHHHHCCCe--EEEeCCCC
Confidence 37899999999999888888776543 333333332 332211 112 33455566666666654 45789988
Q ss_pred HHHHHH
Q 048209 123 ALIAWY 128 (349)
Q Consensus 123 g~ia~~ 128 (349)
.=|...
T Consensus 330 ~di~aa 335 (345)
T PRK14457 330 LDANAA 335 (345)
T ss_pred Cchhhc
Confidence 766543
No 434
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=2.8e+02 Score=18.89 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=38.9
Q ss_pred CCeEEEEccCCCchhhHHHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh----CCceeEEEE
Q 048209 43 GPVVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL----GIHQVFLVG 118 (349)
Q Consensus 43 ~~~iv~~hG~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvG 118 (349)
.|.|||.--+..-......+...+.. .+.|+-+|...+|. ++...+..+ ....+++-|
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v-~~~vvELD~~~~g~-----------------eiq~~l~~~tg~~tvP~vFI~G 75 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGV-NPKVVELDEDEDGS-----------------EIQKALKKLTGQRTVPNVFIGG 75 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCC-CCEEEEccCCCCcH-----------------HHHHHHHHhcCCCCCCEEEECC
Confidence 57777776443322223333333322 36788777653221 233333333 344678889
Q ss_pred echHHHHHHHHHhh
Q 048209 119 HDWGALIAWYFCLF 132 (349)
Q Consensus 119 ~S~Gg~ia~~~a~~ 132 (349)
.+.||.--+.....
T Consensus 76 k~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 76 KFIGGASDLMALHK 89 (104)
T ss_pred EEEcCHHHHHHHHH
Confidence 99999865555444
No 435
>PLN03019 carbonic anhydrase
Probab=21.15 E-value=1.4e+02 Score=25.22 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCceeEEEEechHHHHHHHH
Q 048209 98 LVGDLIGLLDKLGIHQVFLVGHDWGALIAWYF 129 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~ 129 (349)
....|+-.+..++.+.|+|+|||-=|.+...+
T Consensus 201 v~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal 232 (330)
T PLN03019 201 VGAAIEYAVLHLKVENIVVIGHSACGGIKGLM 232 (330)
T ss_pred cchhHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 45677888899999999999999766555433
No 436
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=21.09 E-value=1.7e+02 Score=23.25 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=25.5
Q ss_pred cCCCchhhHHHHHHHHhhCCceEEeeCCCCCC
Q 048209 51 GFPELWYSWRNQLLYLSSRGYRAIAPDLRGYG 82 (349)
Q Consensus 51 G~~~~~~~~~~~~~~L~~~G~~v~~~D~~G~G 82 (349)
.+.++......-++.|.++|-.+++.|.-||.
T Consensus 159 Py~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt 190 (221)
T PF07302_consen 159 PYEGDEEELAAAARELAEQGADLIVLDCMGYT 190 (221)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 34456667777888999999999999998764
No 437
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=21.01 E-value=3.5e+02 Score=19.90 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCce-eEEEEechHHHHHHHHHhhCccccc
Q 048209 60 RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQ-VFLVGHDWGALIAWYFCLFRPDRVK 138 (349)
Q Consensus 60 ~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lvG~S~Gg~ia~~~a~~~p~~v~ 138 (349)
..+.+.|.++||.|+ |+ |. .... ...++.+++..+...+..-..++ +.+.|...|-.++ |.++|. |+
T Consensus 16 ~~l~~~L~~~g~eV~--D~-G~--~~~~---~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~sia---ANK~~G-IR 83 (148)
T PRK05571 16 EEIIEHLEELGHEVI--DL-GP--DSYD---ASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIA---ANKVKG-IR 83 (148)
T ss_pred HHHHHHHHHCCCEEE--Ec-CC--CCCC---CCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH---HhcCCC-eE
Confidence 345678999999884 43 21 1111 02345667777666665433344 4455666665553 677775 55
Q ss_pred eeeeec
Q 048209 139 ALVNMS 144 (349)
Q Consensus 139 ~lvl~~ 144 (349)
+.+..+
T Consensus 84 AA~~~d 89 (148)
T PRK05571 84 AALCHD 89 (148)
T ss_pred EEEECC
Confidence 555544
No 438
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=20.87 E-value=2.4e+02 Score=22.63 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCCceEEeeCCCCCCCCCC
Q 048209 59 WRNQLLYLSSRGYRAIAPDLRGYGDTDA 86 (349)
Q Consensus 59 ~~~~~~~L~~~G~~v~~~D~~G~G~s~~ 86 (349)
+...++.|.+.|.+|..+|.-|.|.+..
T Consensus 59 f~amve~L~~~GvdV~ifddtg~~~TPD 86 (318)
T COG4874 59 FNAMVEGLRQAGVDVVIFDDTGQGETPD 86 (318)
T ss_pred HHHHHHHHHhcCceEEEeecCCCCCCCc
Confidence 4455678888999999999988887753
No 439
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=20.75 E-value=3.8e+02 Score=21.81 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.1
Q ss_pred eEEEEccCCC-chhhHHHHHHHHhhCCceEEeeCCCCCCC
Q 048209 45 VVLFIHGFPE-LWYSWRNQLLYLSSRGYRAIAPDLRGYGD 83 (349)
Q Consensus 45 ~iv~~hG~~~-~~~~~~~~~~~L~~~G~~v~~~D~~G~G~ 83 (349)
..|-++.+.. ....+...++.|.++|..-+.+|+|+.|.
T Consensus 67 GYi~i~~F~~~~~~~l~~a~~~l~~~~~~~LIlDLR~N~G 106 (256)
T cd07561 67 GYLVYNSFTSGYDDELNQAFAEFKAQGVTELVLDLRYNGG 106 (256)
T ss_pred EEEEECccccchHHHHHHHHHHHHHcCCCeEEEEeCCCCC
Confidence 4555666654 34567777888888899999999998754
No 440
>COG3621 Patatin [General function prediction only]
Probab=20.63 E-value=2.3e+02 Score=24.11 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=31.9
Q ss_pred ceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHh-CC---ceeEEE-EechHHHHHHHHHhhCc
Q 048209 71 YRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKL-GI---HQVFLV-GHDWGALIAWYFCLFRP 134 (349)
Q Consensus 71 ~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~lv-G~S~Gg~ia~~~a~~~p 134 (349)
|++..+|=-|.-. .+...+...++++ |. +.++++ |.|.||.+++.+|...+
T Consensus 9 ~rIlsldGGGvrG-------------~i~lE~lr~ieqiqGkkl~e~FDl~~GTSiGgilal~La~~ks 64 (394)
T COG3621 9 YRILSLDGGGVRG-------------AILLEKLRIIEQIQGKKLCEYFDLIGGTSIGGILALGLALGKS 64 (394)
T ss_pred eeEEEecCCcccc-------------HHHHHHHHHHHHHhCCcceeeEeeecCccHHHHHHHHHhcCCC
Confidence 7888887433211 3444455556554 32 245554 89999999999987543
No 441
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=20.63 E-value=1e+02 Score=34.53 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=24.7
Q ss_pred HHHHHHHhCCceeEEEEechHHHHHHHHHhh
Q 048209 102 LIGLLDKLGIHQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 102 ~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
+..+++..|+++-.++|||+|=+.|+.+|..
T Consensus 664 l~~lL~~~Gi~Pd~v~GHSlGE~aAa~aAGv 694 (2582)
T TIGR02813 664 QYKLFTQAGFKADMTAGHSFGELSALCAAGV 694 (2582)
T ss_pred HHHHHHHcCCccceeecCCHHHHHHHHHhCC
Confidence 3455677799899999999999988877643
No 442
>PLN03006 carbonate dehydratase
Probab=20.60 E-value=1.4e+02 Score=24.92 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCceeEEEEechHHHHHH
Q 048209 98 LVGDLIGLLDKLGIHQVFLVGHDWGALIAW 127 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~ 127 (349)
....|+-.+..++.+.|+|+|||-=|.+..
T Consensus 158 ~~aSLEYAV~~L~V~~IVV~GHs~CGaV~A 187 (301)
T PLN03006 158 TKAALEFSVNTLNVENILVIGHSRCGGIQA 187 (301)
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCchHHHH
Confidence 456778888999999999999997666553
No 443
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=20.55 E-value=1.7e+02 Score=18.93 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=14.9
Q ss_pred CeeEEEEeeCCCCeEEEEccCC
Q 048209 32 GINMHVASIGTGPVVLFIHGFP 53 (349)
Q Consensus 32 g~~~~~~~~g~~~~iv~~hG~~ 53 (349)
..++.|...++. .+|++||+.
T Consensus 52 ~~Ri~y~~~~~~-~ivll~~f~ 72 (91)
T PF05973_consen 52 IYRILYFFDGGD-IIVLLHGFI 72 (91)
T ss_pred cceEEEEEcCcc-EEEEEEEEE
Confidence 566766655444 899999985
No 444
>PRK03846 adenylylsulfate kinase; Provisional
Probab=20.54 E-value=2.3e+02 Score=21.79 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=23.8
Q ss_pred CCCCeEEEEccCCCchh-h-HHHHHHHHhhCCceEEeeC
Q 048209 41 GTGPVVLFIHGFPELWY-S-WRNQLLYLSSRGYRAIAPD 77 (349)
Q Consensus 41 g~~~~iv~~hG~~~~~~-~-~~~~~~~L~~~G~~v~~~D 77 (349)
+..|.+|.+.|.+++.. . -..+...|...|..++.+|
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 34677888888766543 3 3444455666677777776
No 445
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.52 E-value=2.9e+02 Score=20.52 Aligned_cols=63 Identities=10% Similarity=0.257 Sum_probs=39.0
Q ss_pred cceEEEeeCCeeEEEEeeCCCCeEEEEccCC-----CchhhHHHHHHHHhhCCceEEeeCCCCCCCCCC
Q 048209 23 IEHTTVGTNGINMHVASIGTGPVVLFIHGFP-----ELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDA 86 (349)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~g~~~~iv~~hG~~-----~~~~~~~~~~~~L~~~G~~v~~~D~~G~G~s~~ 86 (349)
......+++|..+....+ .+.+|+++.-.+ -.......+.+....+||.|+.+-..-++.-.+
T Consensus 6 yd~~~~~~~G~~~~l~~~-~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEP 73 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDY-KGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFPCNQFGGQEP 73 (162)
T ss_pred ccceeeccCCCCccHHHh-CCcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEeccccccccCCC
Confidence 344555666655544432 356777776443 333445666677888999999987766665543
No 446
>PRK10867 signal recognition particle protein; Provisional
Probab=20.41 E-value=6.3e+02 Score=22.66 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=35.9
Q ss_pred HHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHHhhCcc--ccceee
Q 048209 64 LYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFCLFRPD--RVKALV 141 (349)
Q Consensus 64 ~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a~~~p~--~v~~lv 141 (349)
......+|.++.+|-+|....+ +...+.+..+.+......+++|.-++-|.-+...|..+-+ .+.++|
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d----------~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~giI 246 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHID----------EELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVI 246 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccC----------HHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEE
Confidence 3444557999999999864321 2233444444444444445555545444444444443322 245555
Q ss_pred e
Q 048209 142 N 142 (349)
Q Consensus 142 l 142 (349)
+
T Consensus 247 l 247 (433)
T PRK10867 247 L 247 (433)
T ss_pred E
Confidence 5
No 447
>PRK04148 hypothetical protein; Provisional
Probab=20.39 E-value=1.9e+02 Score=20.82 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=17.0
Q ss_pred ceeEEEEechHHHHHHHHHhh
Q 048209 112 HQVFLVGHDWGALIAWYFCLF 132 (349)
Q Consensus 112 ~~~~lvG~S~Gg~ia~~~a~~ 132 (349)
.++..||-..|..+|..++..
T Consensus 18 ~kileIG~GfG~~vA~~L~~~ 38 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKES 38 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHC
Confidence 578999999888888887754
No 448
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=20.39 E-value=1.5e+02 Score=23.33 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHhhC-CceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHH
Q 048209 64 LYLSSR-GYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWY 128 (349)
Q Consensus 64 ~~L~~~-G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~ 128 (349)
..+++. |..++.-..+ |+|.........+-.|-++|+-+++.....+-.-+=|.|-|+.+.-.
T Consensus 57 ~lyaecm~lPlyrr~i~--g~s~nq~l~Y~~t~~DEvEDLy~ll~~VK~~~p~~eaVS~GAIlS~Y 120 (277)
T KOG2316|consen 57 DLYAECMGLPLYRRRIR--GRSINQKLQYTKTEGDEVEDLYELLKTVKEKIPDVEAVSVGAILSDY 120 (277)
T ss_pred HHHHHHhcCceeeeecc--CcccccccccccCCCchHHHHHHHHHHHHhhCCCceeeehhhhHhHH
Confidence 444443 4445544444 55544332234456678888888888876444478899999887643
No 449
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=20.32 E-value=3.9e+02 Score=20.22 Aligned_cols=72 Identities=17% Similarity=0.070 Sum_probs=39.1
Q ss_pred HHHHHHHhhCCceEEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCce-eEEEEechHHHHHHHHHhhCccccc
Q 048209 60 RNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQ-VFLVGHDWGALIAWYFCLFRPDRVK 138 (349)
Q Consensus 60 ~~~~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lvG~S~Gg~ia~~~a~~~p~~v~ 138 (349)
..+.+.|.+.||.|+ |+- -... ...++.+++..+...+..-..++ |.+.|.-.|-.+ .|.+.|. |+
T Consensus 16 ~~l~~~L~~~G~eV~--D~G---~~~~----e~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~si---aANKv~G-IR 82 (171)
T PRK08622 16 MAVSDYLKSKGHEVI--DVG---TYDF----TRTHYPIFGKKVGEAVASGEADLGVCICGTGVGISN---AVNKVPG-IR 82 (171)
T ss_pred HHHHHHHHHCCCEEE--EcC---CCCC----CCCChHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHH---HHhcCCC-eE
Confidence 456788999999884 432 1111 12345667776666664433344 334455555444 3667775 55
Q ss_pred eeeeec
Q 048209 139 ALVNMS 144 (349)
Q Consensus 139 ~lvl~~ 144 (349)
+.+..+
T Consensus 83 AA~~~d 88 (171)
T PRK08622 83 SALVRD 88 (171)
T ss_pred EEEeCC
Confidence 544444
No 450
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.32 E-value=4.8e+02 Score=21.30 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=46.5
Q ss_pred CeEEEEccCCCchhhHHHHHHHHhhCCce-EEeeCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHhCCceeEEEEechH
Q 048209 44 PVVLFIHGFPELWYSWRNQLLYLSSRGYR-AIAPDLRGYGDTDAPPSVTSYTALHLVGDLIGLLDKLGIHQVFLVGHDWG 122 (349)
Q Consensus 44 ~~iv~~hG~~~~~~~~~~~~~~L~~~G~~-v~~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~G 122 (349)
|.++|.--..--......+++.+.+.|.. ++.+|+| + +..+++...++..|...+.++.-+.-
T Consensus 91 p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp---------------~-ee~~~~~~~~~~~gl~~I~lvap~t~ 154 (258)
T PRK13111 91 PIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLP---------------P-EEAEELRAAAKKHGLDLIFLVAPTTT 154 (258)
T ss_pred CEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCC---------------H-HHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 44544433333344566788888888874 7777776 1 35566777778889888888876654
Q ss_pred HHHHHHHHhhCc
Q 048209 123 ALIAWYFCLFRP 134 (349)
Q Consensus 123 g~ia~~~a~~~p 134 (349)
---.-.++...+
T Consensus 155 ~eri~~i~~~s~ 166 (258)
T PRK13111 155 DERLKKIASHAS 166 (258)
T ss_pred HHHHHHHHHhCC
Confidence 433333444333
No 451
>PRK05665 amidotransferase; Provisional
Probab=20.13 E-value=1.9e+02 Score=23.26 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHhCCceeEEEEechHHHHHHHHH
Q 048209 94 TALHLVGDLIGLLDKLGIHQVFLVGHDWGALIAWYFC 130 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a 130 (349)
....+...+.++++..-...+-++|.|+|..+...++
T Consensus 72 ~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~Al 108 (240)
T PRK05665 72 GTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLL 108 (240)
T ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHh
Confidence 3445667777777665333455899999998765554
No 452
>PRK07053 glutamine amidotransferase; Provisional
Probab=20.09 E-value=4.6e+02 Score=20.97 Aligned_cols=32 Identities=19% Similarity=0.028 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCceeEEEEechHHHHHHHHH
Q 048209 99 VGDLIGLLDKLGIHQVFLVGHDWGALIAWYFC 130 (349)
Q Consensus 99 ~~~~~~~~~~~~~~~~~lvG~S~Gg~ia~~~a 130 (349)
+..+.++++..-...+-++|.|+|..+.....
T Consensus 69 ~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~al 100 (234)
T PRK07053 69 LAPEIALLRQRLAAGLPTLGICLGAQLIARAL 100 (234)
T ss_pred HHHHHHHHHHHHHCCCCEEEECccHHHHHHHc
Confidence 34445555543223456899999998776555
Done!