BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048211
(665 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 129/330 (39%), Gaps = 69/330 (20%)
Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
++++ T ++G G+ + + G L+ +P A T+ K R C CL + C
Sbjct: 6 LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG-KEKLMRC 64
Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
+ C + YCS +C+ +A +P+
Sbjct: 65 SQCRVAKYCSAKCQKKA-----------------------------------WPD----- 84
Query: 240 EHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPE 297
HK ECK + P P V L GRV+ K + +G + L +L N ++++ +
Sbjct: 85 -HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLESNINKLTED 141
Query: 298 SKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
K + +V+ + QH E+ + + + L A ++ N++
Sbjct: 142 KK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVICNSF---- 185
Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
+ C E VG+ +Y + SL NHSC PN F L++R + G L +
Sbjct: 186 -----TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTIC 240
Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
Y + ++R K L D+Y F C C C
Sbjct: 241 YLDML--MTSEERRKQLRDQYCFECDCFRC 268
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 129/330 (39%), Gaps = 69/330 (20%)
Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
++++ T ++G G+ + + G L+ +P A T+ K R C CL + C
Sbjct: 4 LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG-KEKLMRC 62
Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
+ C + YCS +C+ +A +P+
Sbjct: 63 SQCRVAKYCSAKCQKKA-----------------------------------WPD----- 82
Query: 240 EHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPE 297
HK ECK + P P V L GRV+ K + +G + L +L N ++++ +
Sbjct: 83 -HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLESNINKLTED 139
Query: 298 SKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
K + +V+ + QH E+ + + + L A ++ N++
Sbjct: 140 RK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVICNSF---- 183
Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
+ C E VG+ +Y + SL NHSC PN F L++R + G L +
Sbjct: 184 -----TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTIC 238
Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
Y + ++R K L D+Y F C C C
Sbjct: 239 YLDML--MTSEERRKQLRDQYCFECDCFRC 266
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 129/330 (39%), Gaps = 69/330 (20%)
Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
++++ T ++G G+ + + G L+ +P A T+ K R C CL + C
Sbjct: 4 LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG-KEKLMRC 62
Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
+ C + YCS +C+ +A +P+
Sbjct: 63 SQCRVAKYCSAKCQKKA-----------------------------------WPD----- 82
Query: 240 EHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPE 297
HK ECK + P P V L GRV+ K + +G + L +L N ++++ +
Sbjct: 83 -HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLESNINKLTED 139
Query: 298 SKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
K + +V+ + QH E+ + + + L A ++ N++
Sbjct: 140 RK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVICNSF---- 183
Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
+ C E VG+ +Y + SL NHSC PN F L++R + G L +
Sbjct: 184 -----TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTIC 238
Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
Y + ++R K L D+Y F C C C
Sbjct: 239 YLDML--MTSEERRKQLRDQYCFECDCFRC 266
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 129/330 (39%), Gaps = 69/330 (20%)
Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPC 179
++++ T ++G G+ + + G L+ +P A T+ K R C CL + C
Sbjct: 5 LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG-KEKLMRC 63
Query: 180 TSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIF 239
+ C + YCS +C+ +A +P+
Sbjct: 64 SQCRVAKYCSAKCQKKA-----------------------------------WPD----- 83
Query: 240 EHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPE 297
HK ECK + P P V L GRV+ K + +G + L +L N ++++ +
Sbjct: 84 -HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLESNINKLTED 140
Query: 298 SKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSD 357
K + +V+ + QH E+ + + + L A ++ N++
Sbjct: 141 RK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVICNSF---- 184
Query: 358 HVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELS 417
+ C E VG+ +Y + SL NHSC PN F L++R + G L +
Sbjct: 185 -----TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTIC 239
Query: 418 YGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
Y + ++R K L D+Y F C C C
Sbjct: 240 YLDML--MTSEERRKQLRDQYCFECDCFRC 267
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 132/338 (39%), Gaps = 69/338 (20%)
Query: 112 RVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNE 171
R S+ ++++ T ++G G+ + + G L+ +P A T+ K R C CL
Sbjct: 32 RGSEFMEPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLG 91
Query: 172 LPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDF 231
+ C+ C + YCS +C+ +A
Sbjct: 92 -KEKLMRCSQCRVAKYCSAKCQKKA----------------------------------- 115
Query: 232 YPEDEHIFEHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSH 289
+P+ HK ECK + P P V L GRV+ K + +G + L +L
Sbjct: 116 WPD------HKRECKCLKSCKPRYPPDSVRLLGRVVFKLM--DGAPSESEKLYSFYDLES 167
Query: 290 NYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMN 349
N ++++ + K + +V+ + QH E+ + + + L A ++
Sbjct: 168 NINKLTEDRK--EGLRQLVMTF--QHFMREEIQ-DASQLPPAFDLFE-------AFAKVI 215
Query: 350 SNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVP 409
N++ + C E VG+ +Y + SL NHSC PN F L++R +
Sbjct: 216 CNSF---------TICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIE 266
Query: 410 SGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
G L + Y + ++R K L D+Y F C C C
Sbjct: 267 VGEELTICYLDML--MTSEERRKQLRDQYCFECDCFRC 302
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 129/331 (38%), Gaps = 71/331 (21%)
Query: 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIP- 178
++++ T ++G G+ + + G L+ +P A T+ K R C CL L + +
Sbjct: 5 LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCL--LGKEKLXR 62
Query: 179 CTSCSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHI 238
C+ C + YCS +C+ +A +P+
Sbjct: 63 CSQCRVAKYCSAKCQKKA-----------------------------------WPD---- 83
Query: 239 FEHKHECKGVH--WPVILPSDVVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSP 296
HK ECK + P P V L GRV+ K +G + L +L N ++++
Sbjct: 84 --HKRECKCLKSCKPRYPPDSVRLLGRVVFKLX--DGAPSESEKLYSFYDLESNINKLTE 139
Query: 297 ESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQS 356
+ K + +V + QH E+ + + + L A ++ N++
Sbjct: 140 DRK--EGLRQLVXTF--QHFXREEIQ-DASQLPPAFDLFE-------AFAKVICNSF--- 184
Query: 357 DHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLEL 416
+ C E VG+ +Y + SL NHSC PN F L++R + G L +
Sbjct: 185 ------TICNAEXQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTI 238
Query: 417 SYGPQVGQWDCKDRLKFLEDEYSFRCQCSGC 447
Y + + +R K L D+Y F C C C
Sbjct: 239 CYLDXLXTSE--ERRKQLRDQYCFECDCFRC 267
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 124/335 (37%), Gaps = 83/335 (24%)
Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
L+ +P KGRG+ + G L+ S YA ++ + R HC YC + C
Sbjct: 9 LERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLS-KCGR 67
Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
C YC+ C+ + + PM H
Sbjct: 68 CKQAFYCNVECQKE-------DWPM----------------------------------H 86
Query: 242 KHECK-----GVHWPVILPSDVV-LAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS 295
K EC G +W PS+ V L R+L K + + LL E + ++
Sbjct: 87 KLECSPMVVFGENWN---PSETVRLTARILAKQ-KIHPERTPSEKLLAVKEFESHLDKLD 142
Query: 296 PESK--LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNY 353
E K ++S I A+ Y S E P N + +V+L +Q+ N I
Sbjct: 143 NEKKDLIQSDIAALHHFY----SKHLEFPDNDS----LVVLFAQVNCNGFTI-------- 186
Query: 354 GQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYP 413
+ + +S +G AI+ +L NHSC PN+ + +R + + G
Sbjct: 187 -EDEELS----------HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE 235
Query: 414 LELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCS 448
+ SY + + +DR L D Y F C+C C+
Sbjct: 236 VFTSYIDLL--YPTEDRNDRLRDSYFFTCECQECT 268
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 123/335 (36%), Gaps = 83/335 (24%)
Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
L+ +P KGRG+ + G L+ S YA ++ + R HC YC + C
Sbjct: 9 LERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLS-KCGR 67
Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
C YC+ C+ + + PM H
Sbjct: 68 CKQAFYCNVECQKE-------DWPM----------------------------------H 86
Query: 242 KHECK-----GVHWPVILPSDVV-LAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS 295
K EC G +W PS+ V L R+L K + + LL E + ++
Sbjct: 87 KLECSPMVVFGENWN---PSETVRLTARILAKQ-KIHPERTPSEKLLAVKEFESHLDKLD 142
Query: 296 PESK--LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNY 353
E K ++S I A+ Y S P N + +V+L +Q+ N I
Sbjct: 143 NEKKDLIQSDIAALHHFY----SKHLGFPDNDS----LVVLFAQVNCNGFTI-------- 186
Query: 354 GQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYP 413
+ + +S +G AI+ +L NHSC PN+ + +R + + G
Sbjct: 187 -EDEELS----------HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE 235
Query: 414 LELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCS 448
+ SY + + +DR L D Y F C+C C+
Sbjct: 236 VFTSYIDLL--YPTEDRNDRLRDSYFFTCECQECT 268
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 123/335 (36%), Gaps = 83/335 (24%)
Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
L+ +P KGRG+ + G L+ S YA ++ + R HC YC + C
Sbjct: 9 LERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLS-KCGR 67
Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
C YC+ C+ + + PM H
Sbjct: 68 CKQAFYCNVECQKE-------DWPM----------------------------------H 86
Query: 242 KHECK-----GVHWPVILPSDVV-LAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS 295
K EC G +W PS+ V L R+L K + + LL E + ++
Sbjct: 87 KLECSPMVVFGENWN---PSETVRLTARILAKQ-KIHPERTPSEKLLAVKEFESHLDKLD 142
Query: 296 PESK--LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNY 353
E K ++S I A+ Y S P N + +V+L +Q+ N I
Sbjct: 143 NEKKDLIQSDIAALHHFY----SKHLGFPDNDS----LVVLFAQVNCNGFTI-------- 186
Query: 354 GQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYP 413
+ + +S +G AI+ +L NHSC PN+ + +R + + G
Sbjct: 187 -EDEELS----------HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE 235
Query: 414 LELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCS 448
+ SY + + +DR L D Y F C+C C+
Sbjct: 236 VFTSYIDLL--YPTEDRNDRLRDSYFFTCECQECT 268
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 120/335 (35%), Gaps = 83/335 (24%)
Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
L+ + KGRG+ + G L+ S YA ++ R HC C + C
Sbjct: 9 LERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLS-KCGR 67
Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
C YC C+ + + P+ H
Sbjct: 68 CKQAFYCDVECQKE-------DWPL----------------------------------H 86
Query: 242 KHECK-----GVHWPVILPSDVV-LAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVS 295
K EC G +W PS+ V L R+L K + + LL E + ++
Sbjct: 87 KLECSSMVVLGENWN---PSETVRLTARILAKQ-KIHPERTPSEKLLAVREFESHLDKLD 142
Query: 296 PESK--LESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNY 353
E K ++S I A+ Y S E P + S +V+L +Q+ N I
Sbjct: 143 NEKKDLIQSDIAALHQFY----SKYLEFPDH----SSLVVLFAQVNCNGFTI-------- 186
Query: 354 GQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYP 413
+ + +S +G AI+ +L NHSC PN+ + +R + + G
Sbjct: 187 -EDEELS----------HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDE 235
Query: 414 LELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCS 448
+ SY + + +DR L D Y F C+C C+
Sbjct: 236 VFTSYIDLL--YPTEDRNDRLRDSYFFTCECRECT 268
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74
Y NRA+ L K E + DCN+A++ P++ +A+ R+ ++++ + A+ L A+
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100
Query: 75 RESSL 79
+++ +
Sbjct: 101 KDAEV 105
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 118/353 (33%), Gaps = 85/353 (24%)
Query: 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTS 181
++ T+ KGRG+ + + ++ +E Y+ + CH C C
Sbjct: 9 VEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKR-QEKLHRCGQ 67
Query: 182 CSIPLYCSRRCRGQAGGQVFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEH 241
C YC R C+ A H
Sbjct: 68 CKFAHYCDRTCQKDA-----------------------------------------WLNH 86
Query: 242 KHECKGVHWPVILPSD-VVLAGRVLVKSVQKNGVSMDVPNLLGKLELSHNYSQVSPESKL 300
K+EC + +P++ + LA R++ + V++ G + L+ +L ++ E +
Sbjct: 87 KNECAAIKKYGKVPNENIRLAARIMWR-VEREGTGLTEGCLVSVDDLQNHVEHFGEEEQK 145
Query: 301 ESHIYAIVLL-YCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHV 359
E + L Y S F + +S + +I N N + SD
Sbjct: 146 ELRVDVDTFLQYWPPQSQQFSMQY----ISHIFGVI-------------NCNGFTLSDQR 188
Query: 360 SSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYF----------LSRTLM---IRTTE 406
+ VG+ I+ L NH C PN F + T M +R
Sbjct: 189 GLQA--------VGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG 240
Query: 407 FVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNTSDLVINA 459
+ G L +SY + ++R + L+ +Y F C C C + DL + A
Sbjct: 241 KISEGEELTVSYIDFLHL--SEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAA 291
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74
Y NRA+ L K E + DCN+A++ P++ +A+ R+ ++++ + A+ L A+
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 75 RESSL 79
+++ +
Sbjct: 236 KDAEV 240
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDL 69
LVA Y NRA K + L DC RA+++ KA + G+ + +E++D+A+ +L
Sbjct: 41 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 100
Query: 70 TIAKN--RESSLAGKKQIESELKI 91
A + +E L I S L+I
Sbjct: 101 QRAYSLAKEQRLNFGDDIPSALRI 124
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV 66
A + NRA+ K + ++DC RA+ I P+Y+KA+ R G SL H +AV
Sbjct: 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAV 100
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDL 69
LVA Y NRA K + L DC RA+++ KA + G+ + +E++D+A+ +L
Sbjct: 36 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 95
Query: 70 TIAKN--RESSLAGKKQIESELKI 91
A + +E L I S L+I
Sbjct: 96 QRAYSLAKEQRLNFGDDIPSALRI 119
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 28 LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
L + + +A++I P ++KA RR N SL N DA+ DL++
Sbjct: 75 LEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV 118
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74
Y+ A L +++ E + +AV + P Y +Y RG++ L+++ +A D A++
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 28 LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
L + + +A++I P ++KA RR N SL N DA+ DL++
Sbjct: 71 LEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV 114
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74
Y+ A L +++ E + +AV + P Y +Y RG++ L+++ +A D A++
Sbjct: 275 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 334
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
A+ + N + K+ + + +A+++ P+ AKAWYRRG ++ A+ D
Sbjct: 43 ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQK 102
Query: 72 AKNRESSLAGKKQ 84
A + + A KQ
Sbjct: 103 ALELDPNNAKAKQ 115
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHD 63
N KD A LY NRA+ K L+DC +Q+ P++ K + R+ +++++
Sbjct: 46 NPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 101
Query: 64 DAVHDLTIAKNRESS 78
A+ A + +SS
Sbjct: 102 KAMDVYQKALDLDSS 116
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAK 73
Y+ A ++ R+ E ++A+++ + + +Y RG++N L+N+D A D AK
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 37 RAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71
+A+++ P Y+K RR N L DA+ DL++
Sbjct: 64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHD 68
A Y NR+ + + L D RA+++ Y K +YRR N++L A+ D
Sbjct: 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 96
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDL-T 70
A Y NR+ + + L D RA+++ Y K +YRR N++L A+ D T
Sbjct: 55 AIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYET 114
Query: 71 IAKNRESSLAGKKQIESELKII 92
+ K + K + + KI+
Sbjct: 115 VVKVKPHDKDAKMKYQECNKIV 136
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site
Of Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site
Of Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In
Complex With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In
Complex With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRG 53
A + N ASVLQ++ L E L A++I P++A A+ G
Sbjct: 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDL-T 70
A Y NR+ + + L D RA+++ Y K +YRR N++L A+ D T
Sbjct: 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYET 106
Query: 71 IAKNRESSLAGKKQIESELKII 92
+ K + K + + KI+
Sbjct: 107 VVKVKPHDKDAKMKYQECNKIV 128
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRG 53
A + N ASVLQ++ L E L A++I P++A A+ G
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
>pdb|2Q9Q|D Chain D, The Crystal Structure Of Full Length Human Gins Complex
pdb|2Q9Q|H Chain H, The Crystal Structure Of Full Length Human Gins Complex
Length = 220
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 386 SCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLE 435
+ +P + A+FL R+ T VP G LEL G +D K R+ +E
Sbjct: 42 TAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVE 91
>pdb|2E9X|C Chain C, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|G Chain G, The Crystal Structure Of Human Gins Core Complex
Length = 219
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 386 SCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLE 435
+ +P + A+FL R+ T VP G LEL G +D K R+ +E
Sbjct: 41 TAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVE 90
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 285 LELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLA 344
L+L + S + PE K S +Y Y H YG E+PI G + Q L Q+
Sbjct: 204 LDLLNIPSSMLPEVKSNSEVYGHTRSY---HFYGSEVPIAGMAGDQQAALFGQMAFEK-- 258
Query: 345 IVRMNSNNYG 354
M N YG
Sbjct: 259 --GMIKNTYG 266
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74
++N A+ L K E + CN + KA +RRGK L D A D A+
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292
Query: 75 RESSLAGKKQIESELKIILDQSNRTSNKVVQHTKNNLRVSDES 117
K I EL+ + +Q K + K + DE
Sbjct: 293 YAPD---DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 285 LELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLA 344
L+L + S + PE K S +Y Y H YG E+PI G + Q L Q+
Sbjct: 200 LDLLNIPSSMLPEVKSNSEVYGHTRSY---HFYGSEVPIAGMAGDQQAALFGQMAFEK-- 254
Query: 345 IVRMNSNNYG 354
M N YG
Sbjct: 255 --GMIKNTYG 262
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 112 RVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLV 146
RV ++ +LQ T D G G+ S DIP G+ V
Sbjct: 113 RVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFV 147
>pdb|2EHO|D Chain D, Crystal Structure Of Human Gins Complex
pdb|2EHO|H Chain H, Crystal Structure Of Human Gins Complex
pdb|2EHO|L Chain L, Crystal Structure Of Human Gins Complex
Length = 216
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 389 PNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLE 435
P + A+FL R+ T VP G LEL G +D K R+ +E
Sbjct: 41 PRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVE 87
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 112 RVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLV 146
RV ++ +LQ T D G G+ S DIP G+ V
Sbjct: 137 RVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFV 171
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 112 RVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLV 146
RV ++ +LQ T D G G+ S DIP G+ V
Sbjct: 139 RVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFV 173
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 112 RVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLV 146
RV ++ +LQ T D G G+ S DIP G+ V
Sbjct: 138 RVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFV 172
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDA 65
A LY NRA+ L K L DC+ +++ + K + R+ V++ A
Sbjct: 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKA 100
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 41/140 (29%)
Query: 43 PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIILDQSNRTSNK 102
P + + W ++N S ++ + + AKN+E L+Q+ K
Sbjct: 6 PGFQEHWALMEELNRSKKDFEAIIQ----AKNKE----------------LEQTKEEKEK 45
Query: 103 VVQHTKNNLRVSDESVQVQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRE 162
+ + L ++ ++ +LQC+ I S+Y I AVT++ C
Sbjct: 46 MQAQKEEVLSHMNDVLENELQCI--------ICSEYFIE-----------AVTLN--CAH 84
Query: 163 THCHYCLNELPADAIPCTSC 182
+ C YC+NE I C C
Sbjct: 85 SFCSYCINEWMKRKIECPIC 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,287,094
Number of Sequences: 62578
Number of extensions: 788422
Number of successful extensions: 1793
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1705
Number of HSP's gapped (non-prelim): 74
length of query: 665
length of database: 14,973,337
effective HSP length: 105
effective length of query: 560
effective length of database: 8,402,647
effective search space: 4705482320
effective search space used: 4705482320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)