Query 048211
Match_columns 665
No_of_seqs 339 out of 2858
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:27:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2084 Predicted histone tail 99.9 5.3E-21 1.1E-25 213.6 24.6 234 371-653 197-461 (482)
2 PF00856 SET: SET domain; Int 99.6 4E-15 8.7E-20 139.9 10.9 50 370-419 109-162 (162)
3 KOG0553 TPR repeat-containing 99.5 1.5E-13 3.2E-18 136.3 9.2 85 11-95 114-198 (304)
4 KOG4234 TPR repeat-containing 99.4 1.8E-12 4E-17 120.5 10.3 89 7-95 129-217 (271)
5 KOG0543 FKBP-type peptidyl-pro 99.2 3.3E-11 7.1E-16 124.6 10.4 76 9-84 254-329 (397)
6 KOG0550 Molecular chaperone (D 99.1 1.1E-10 2.3E-15 119.8 8.0 93 1-94 276-368 (486)
7 PF13414 TPR_11: TPR repeat; P 99.0 1.2E-09 2.7E-14 87.4 8.0 67 11-77 2-69 (69)
8 KOG0548 Molecular co-chaperone 99.0 9.7E-10 2.1E-14 116.6 8.4 80 11-90 35-114 (539)
9 KOG0548 Molecular co-chaperone 98.9 2.4E-09 5.1E-14 113.7 9.6 80 10-89 390-469 (539)
10 smart00317 SET SET (Su(var)3-9 98.9 6.6E-10 1.4E-14 98.5 3.6 44 375-418 69-116 (116)
11 KOG0547 Translocase of outer m 98.8 6.7E-09 1.5E-13 108.8 7.9 64 12-75 149-212 (606)
12 KOG4648 Uncharacterized conser 98.8 5E-09 1.1E-13 105.1 6.5 84 10-93 129-212 (536)
13 KOG0551 Hsp90 co-chaperone CNS 98.8 1.2E-08 2.6E-13 102.4 6.8 77 4-80 111-187 (390)
14 PRK15359 type III secretion sy 98.7 7.2E-08 1.6E-12 89.3 10.9 81 11-91 57-137 (144)
15 PLN03088 SGT1, suppressor of 98.7 1.6E-07 3.6E-12 100.4 12.2 83 11-93 35-117 (356)
16 KOG0376 Serine-threonine phosp 98.6 2.2E-08 4.7E-13 105.8 3.6 85 11-95 37-121 (476)
17 PF13432 TPR_16: Tetratricopep 98.6 1.3E-07 2.9E-12 74.5 7.2 65 16-80 1-65 (65)
18 PF13371 TPR_9: Tetratricopept 98.5 5.7E-07 1.2E-11 72.6 8.9 68 19-86 2-69 (73)
19 KOG0624 dsRNA-activated protei 98.5 1E-07 2.2E-12 96.0 4.4 83 10-92 70-152 (504)
20 PRK15363 pathogenicity island 98.4 2.1E-06 4.6E-11 79.0 10.5 85 10-94 67-151 (157)
21 PF01753 zf-MYND: MYND finger; 98.4 1.1E-07 2.4E-12 65.8 1.0 37 165-205 1-37 (37)
22 TIGR02552 LcrH_SycD type III s 98.4 2.8E-06 6.1E-11 77.4 10.6 69 12-80 17-85 (135)
23 PRK11189 lipoprotein NlpI; Pro 98.3 2.9E-06 6.2E-11 88.6 10.9 78 4-81 56-133 (296)
24 KOG0545 Aryl-hydrocarbon recep 98.3 2.5E-06 5.4E-11 82.5 9.1 70 11-80 229-298 (329)
25 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 3E-06 6.6E-11 90.2 9.9 68 8-75 71-141 (453)
26 PF14559 TPR_19: Tetratricopep 98.3 3.7E-06 8E-11 66.8 7.8 66 22-87 1-66 (68)
27 KOG2589 Histone tail methylase 98.2 8.3E-07 1.8E-11 89.7 4.2 66 375-452 191-258 (453)
28 PRK11189 lipoprotein NlpI; Pro 98.2 5.4E-06 1.2E-10 86.6 9.7 70 11-80 97-166 (296)
29 PRK15359 type III secretion sy 98.2 1.1E-05 2.3E-10 74.8 10.5 68 14-81 26-93 (144)
30 KOG0624 dsRNA-activated protei 98.1 3.4E-06 7.5E-11 85.2 6.3 97 4-100 299-395 (504)
31 COG3063 PilF Tfp pilus assembl 98.1 1.6E-05 3.5E-10 76.8 10.1 76 6-81 29-104 (250)
32 PF13424 TPR_12: Tetratricopep 98.1 6.3E-06 1.4E-10 67.5 6.4 67 9-75 2-75 (78)
33 TIGR00990 3a0801s09 mitochondr 98.1 1.1E-05 2.5E-10 93.1 9.7 68 12-79 160-227 (615)
34 KOG0547 Translocase of outer m 98.1 5.6E-06 1.2E-10 87.4 6.1 66 15-80 363-428 (606)
35 TIGR02552 LcrH_SycD type III s 98.0 6.2E-05 1.3E-09 68.5 10.9 84 11-94 50-133 (135)
36 KOG4642 Chaperone-dependent E3 98.0 1.2E-05 2.7E-10 77.6 5.8 67 9-75 41-107 (284)
37 KOG0553 TPR repeat-containing 97.8 5.2E-05 1.1E-09 76.1 8.0 70 11-80 80-149 (304)
38 PF12895 Apc3: Anaphase-promot 97.8 3.2E-05 7E-10 64.3 5.5 61 11-72 24-84 (84)
39 PRK15363 pathogenicity island 97.8 0.00012 2.7E-09 67.4 9.5 73 8-81 32-104 (157)
40 KOG4555 TPR repeat-containing 97.8 9E-05 1.9E-09 65.1 7.9 67 11-77 76-146 (175)
41 PRK10370 formate-dependent nit 97.8 0.00018 3.8E-09 70.4 11.1 70 11-80 72-144 (198)
42 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00016 3.6E-09 63.6 9.8 67 13-79 3-72 (119)
43 cd00189 TPR Tetratricopeptide 97.7 0.00032 7E-09 57.5 10.3 67 14-80 2-68 (100)
44 KOG1308 Hsp70-interacting prot 97.7 2.1E-05 4.6E-10 80.0 3.4 69 10-78 146-214 (377)
45 PLN03088 SGT1, suppressor of 97.7 0.00031 6.6E-09 75.3 11.7 67 15-81 5-71 (356)
46 PF00515 TPR_1: Tetratricopept 97.7 9.1E-05 2E-09 49.9 4.9 32 47-78 2-33 (34)
47 COG2940 Proteins containing SE 97.7 2.5E-05 5.4E-10 87.0 3.1 70 378-449 404-477 (480)
48 PRK12370 invasion protein regu 97.6 0.00018 3.8E-09 82.0 9.8 70 11-80 337-406 (553)
49 KOG4626 O-linked N-acetylgluco 97.6 8.9E-05 1.9E-09 80.4 6.7 69 11-79 387-455 (966)
50 KOG4442 Clathrin coat binding 97.6 3.8E-05 8.2E-10 84.4 4.0 41 380-420 194-238 (729)
51 TIGR00990 3a0801s09 mitochondr 97.6 0.00029 6.4E-09 81.4 11.7 71 10-80 329-399 (615)
52 PF00515 TPR_1: Tetratricopept 97.6 0.0001 2.2E-09 49.7 4.5 34 12-45 1-34 (34)
53 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00049 1.1E-08 60.5 10.2 76 10-85 37-115 (119)
54 PRK02603 photosystem I assembl 97.6 0.0007 1.5E-08 64.6 11.7 74 8-81 31-107 (172)
55 PF13431 TPR_17: Tetratricopep 97.6 9.5E-05 2.1E-09 50.0 3.7 33 35-67 2-34 (34)
56 KOG1080 Histone H3 (Lys4) meth 97.5 5.7E-05 1.2E-09 88.5 3.9 41 379-419 939-983 (1005)
57 PRK10803 tol-pal system protei 97.5 0.00073 1.6E-08 68.9 11.1 76 11-86 141-220 (263)
58 TIGR02521 type_IV_pilW type IV 97.5 0.0012 2.7E-08 64.8 12.2 75 7-81 26-100 (234)
59 PRK09782 bacteriophage N4 rece 97.5 0.00058 1.3E-08 81.9 11.3 69 12-80 609-677 (987)
60 cd00189 TPR Tetratricopeptide 97.4 0.00052 1.1E-08 56.3 7.6 66 13-78 35-100 (100)
61 PRK10370 formate-dependent nit 97.4 0.00098 2.1E-08 65.2 10.3 79 11-89 106-187 (198)
62 PRK02603 photosystem I assembl 97.4 0.0008 1.7E-08 64.2 9.5 69 11-79 71-153 (172)
63 KOG4626 O-linked N-acetylgluco 97.4 0.00051 1.1E-08 74.8 8.6 70 11-80 353-422 (966)
64 PF07719 TPR_2: Tetratricopept 97.4 0.00034 7.4E-09 46.9 4.8 34 46-79 1-34 (34)
65 CHL00033 ycf3 photosystem I as 97.4 0.0018 3.8E-08 61.5 11.3 73 9-81 32-107 (168)
66 CHL00033 ycf3 photosystem I as 97.3 0.0013 2.8E-08 62.5 9.9 71 10-80 70-154 (168)
67 TIGR03302 OM_YfiO outer membra 97.3 0.0011 2.5E-08 66.4 9.9 75 8-82 29-106 (235)
68 KOG1125 TPR repeat-containing 97.3 0.00025 5.4E-09 76.8 5.0 68 11-78 463-530 (579)
69 KOG1310 WD40 repeat protein [G 97.3 0.0004 8.7E-09 74.2 6.3 74 9-82 405-481 (758)
70 PRK15179 Vi polysaccharide bio 97.3 0.00089 1.9E-08 77.3 9.7 71 10-80 118-188 (694)
71 KOG1173 Anaphase-promoting com 97.3 0.0011 2.4E-08 71.7 9.6 75 13-87 456-530 (611)
72 PRK10941 hypothetical protein; 97.3 0.0028 6E-08 64.6 12.2 86 8-93 177-262 (269)
73 TIGR02521 type_IV_pilW type IV 97.2 0.0035 7.7E-08 61.4 11.9 66 13-78 136-201 (234)
74 PF13428 TPR_14: Tetratricopep 97.2 0.00089 1.9E-08 48.1 5.3 42 13-54 2-43 (44)
75 TIGR03302 OM_YfiO outer membra 97.2 0.0023 5.1E-08 64.1 10.3 77 10-86 68-155 (235)
76 PRK12370 invasion protein regu 97.2 0.0017 3.8E-08 73.9 10.3 72 11-82 294-374 (553)
77 PF07719 TPR_2: Tetratricopept 97.1 0.0011 2.5E-08 44.3 5.2 34 12-45 1-34 (34)
78 PF06552 TOM20_plant: Plant sp 97.1 0.0021 4.6E-08 60.3 8.4 76 10-85 23-119 (186)
79 KOG1840 Kinesin light chain [C 97.1 0.0051 1.1E-07 68.0 12.9 87 571-658 246-333 (508)
80 PRK09782 bacteriophage N4 rece 97.1 0.0031 6.8E-08 75.8 11.9 74 11-84 642-715 (987)
81 PLN02789 farnesyltranstransfer 97.1 0.0018 3.9E-08 68.1 8.5 72 10-81 69-143 (320)
82 PRK15331 chaperone protein Sic 97.1 0.0026 5.7E-08 59.1 8.5 79 11-93 70-148 (165)
83 PLN02789 farnesyltranstransfer 97.1 0.0023 5E-08 67.3 9.1 71 11-81 105-177 (320)
84 PRK15179 Vi polysaccharide bio 96.9 0.0049 1.1E-07 71.3 11.3 72 11-82 85-156 (694)
85 KOG0546 HSP90 co-chaperone CPR 96.9 0.00057 1.2E-08 70.1 2.9 87 7-93 270-356 (372)
86 COG4785 NlpI Lipoprotein NlpI, 96.9 0.0026 5.6E-08 61.1 7.0 75 6-80 59-133 (297)
87 PF13512 TPR_18: Tetratricopep 96.9 0.0071 1.5E-07 55.0 9.3 73 9-81 7-82 (142)
88 KOG4555 TPR repeat-containing 96.8 0.014 3.1E-07 51.6 10.5 69 11-79 42-110 (175)
89 PRK10049 pgaA outer membrane p 96.8 0.0063 1.4E-07 72.2 11.4 70 11-80 358-427 (765)
90 COG5010 TadD Flp pilus assembl 96.8 0.0057 1.2E-07 60.6 8.5 63 18-80 106-168 (257)
91 KOG4648 Uncharacterized conser 96.7 0.0016 3.4E-08 66.3 4.6 64 15-78 100-163 (536)
92 PF12569 NARP1: NMDA receptor- 96.7 0.0073 1.6E-07 67.4 10.2 71 10-80 192-262 (517)
93 PRK15174 Vi polysaccharide exp 96.7 0.0091 2E-07 69.4 11.5 65 16-80 216-284 (656)
94 PF12688 TPR_5: Tetratrico pep 96.7 0.0099 2.2E-07 52.9 9.0 67 13-79 2-71 (120)
95 PRK15174 Vi polysaccharide exp 96.7 0.0061 1.3E-07 70.9 10.0 72 11-82 245-320 (656)
96 PRK10803 tol-pal system protei 96.7 0.017 3.6E-07 59.0 11.5 83 8-90 176-261 (263)
97 PF12968 DUF3856: Domain of Un 96.7 0.012 2.7E-07 51.0 8.7 67 9-75 52-129 (144)
98 PF13181 TPR_8: Tetratricopept 96.6 0.0034 7.4E-08 42.0 4.1 32 47-78 2-33 (34)
99 PRK10153 DNA-binding transcrip 96.6 0.0087 1.9E-07 67.1 9.5 69 12-81 420-488 (517)
100 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.012 2.5E-07 44.1 7.0 46 48-93 3-48 (53)
101 PRK11788 tetratricopeptide rep 96.5 0.011 2.3E-07 64.1 9.5 68 12-79 141-213 (389)
102 KOG1125 TPR repeat-containing 96.5 0.0055 1.2E-07 66.7 7.0 69 11-79 429-497 (579)
103 KOG1082 Histone H3 (Lys9) meth 96.5 0.0017 3.8E-08 69.6 3.0 43 380-422 273-323 (364)
104 KOG1840 Kinesin light chain [C 96.5 0.016 3.4E-07 64.2 10.3 83 579-662 212-295 (508)
105 PF12895 Apc3: Anaphase-promot 96.4 0.0067 1.4E-07 50.2 5.7 55 25-80 2-58 (84)
106 PF13428 TPR_14: Tetratricopep 96.4 0.0076 1.6E-07 43.2 4.9 37 46-82 1-37 (44)
107 KOG2076 RNA polymerase III tra 96.4 0.016 3.5E-07 66.2 9.7 74 9-82 411-485 (895)
108 COG3063 PilF Tfp pilus assembl 96.3 0.012 2.5E-07 57.4 7.4 64 11-74 68-131 (250)
109 KOG0550 Molecular chaperone (D 96.3 0.012 2.6E-07 61.7 7.7 69 11-79 248-320 (486)
110 KOG1155 Anaphase-promoting com 96.3 0.024 5.2E-07 60.3 9.9 75 13-87 365-439 (559)
111 PF13424 TPR_12: Tetratricopep 96.3 0.016 3.5E-07 47.0 7.0 64 574-639 13-77 (78)
112 PRK11447 cellulose synthase su 96.2 0.018 3.8E-07 71.7 10.4 70 12-81 461-530 (1157)
113 PRK10866 outer membrane biogen 96.2 0.049 1.1E-06 55.0 11.8 73 10-82 30-105 (243)
114 PRK10866 outer membrane biogen 96.2 0.035 7.5E-07 56.1 10.6 41 44-84 30-70 (243)
115 TIGR02917 PEP_TPR_lipo putativ 96.2 0.025 5.4E-07 67.6 11.3 70 11-80 21-90 (899)
116 PRK10049 pgaA outer membrane p 96.2 0.035 7.5E-07 66.0 11.9 80 11-90 392-471 (765)
117 PF13374 TPR_10: Tetratricopep 96.2 0.0083 1.8E-07 42.0 4.2 39 609-647 2-41 (42)
118 PF13181 TPR_8: Tetratricopept 96.2 0.0098 2.1E-07 39.7 4.3 34 12-45 1-34 (34)
119 PF09976 TPR_21: Tetratricopep 96.1 0.017 3.7E-07 53.3 7.4 66 6-71 42-110 (145)
120 PF13525 YfiO: Outer membrane 96.1 0.041 8.9E-07 54.0 10.4 73 11-83 4-79 (203)
121 KOG1126 DNA-binding cell divis 96.1 0.008 1.7E-07 66.5 5.6 71 11-81 454-524 (638)
122 cd05804 StaR_like StaR_like; a 96.1 0.025 5.4E-07 60.3 9.4 70 9-78 111-180 (355)
123 PRK11447 cellulose synthase su 96.1 0.03 6.5E-07 69.7 11.2 68 14-81 353-420 (1157)
124 COG2912 Uncharacterized conser 96.1 0.034 7.3E-07 55.9 9.4 86 7-92 176-261 (269)
125 COG4785 NlpI Lipoprotein NlpI, 96.1 0.0088 1.9E-07 57.5 4.9 73 10-82 97-169 (297)
126 KOG1141 Predicted histone meth 96.0 0.003 6.6E-08 70.5 2.0 44 379-422 1189-1240(1262)
127 PRK15331 chaperone protein Sic 96.0 0.045 9.7E-07 51.0 9.1 73 7-80 33-105 (165)
128 KOG1128 Uncharacterized conser 96.0 0.015 3.3E-07 64.9 7.0 60 23-82 496-555 (777)
129 TIGR02917 PEP_TPR_lipo putativ 95.9 0.045 9.8E-07 65.4 11.8 74 8-81 121-194 (899)
130 PRK11906 transcriptional regul 95.9 0.033 7.2E-07 60.0 8.8 68 12-79 338-405 (458)
131 KOG4162 Predicted calmodulin-b 95.9 0.027 5.9E-07 63.3 8.4 79 9-87 681-761 (799)
132 PRK11788 tetratricopeptide rep 95.8 0.039 8.5E-07 59.6 9.5 70 11-80 68-141 (389)
133 PF13414 TPR_11: TPR repeat; P 95.8 0.015 3.2E-07 45.9 4.6 33 11-43 36-69 (69)
134 KOG1083 Putative transcription 95.8 0.006 1.3E-07 70.1 3.0 41 380-420 1251-1295(1306)
135 PF13429 TPR_15: Tetratricopep 95.8 0.025 5.4E-07 58.4 7.4 61 20-80 118-180 (280)
136 KOG4151 Myosin assembly protei 95.7 0.026 5.5E-07 64.0 7.7 90 4-93 83-174 (748)
137 KOG1126 DNA-binding cell divis 95.7 0.061 1.3E-06 59.7 10.2 70 11-80 488-557 (638)
138 PF13512 TPR_18: Tetratricopep 95.6 0.095 2.1E-06 47.7 9.6 82 8-94 43-127 (142)
139 PF13525 YfiO: Outer membrane 95.6 0.097 2.1E-06 51.3 10.5 86 7-92 37-136 (203)
140 PF03704 BTAD: Bacterial trans 95.6 0.088 1.9E-06 48.4 9.6 63 11-73 61-123 (146)
141 KOG1085 Predicted methyltransf 95.6 0.0088 1.9E-07 59.2 2.8 43 379-421 333-379 (392)
142 KOG1155 Anaphase-promoting com 95.5 0.087 1.9E-06 56.2 10.2 70 11-80 397-466 (559)
143 KOG2002 TPR-containing nuclear 95.5 0.043 9.3E-07 63.3 8.6 80 8-87 303-383 (1018)
144 KOG2076 RNA polymerase III tra 95.5 0.032 7E-07 63.8 7.4 62 12-73 449-510 (895)
145 KOG4234 TPR repeat-containing 95.5 0.067 1.5E-06 51.0 8.3 63 18-80 101-168 (271)
146 PF12688 TPR_5: Tetratrico pep 95.5 0.14 3E-06 45.6 9.9 68 7-74 33-103 (120)
147 PF09976 TPR_21: Tetratricopep 95.4 0.1 2.2E-06 48.1 9.4 67 13-80 13-82 (145)
148 smart00028 TPR Tetratricopepti 95.4 0.022 4.7E-07 36.3 3.6 32 47-78 2-33 (34)
149 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.079 1.7E-06 39.6 6.8 37 14-50 3-39 (53)
150 KOG0551 Hsp90 co-chaperone CNS 95.3 0.058 1.3E-06 55.3 7.8 73 8-80 77-153 (390)
151 COG4783 Putative Zn-dependent 95.3 0.12 2.6E-06 55.7 10.5 66 15-80 343-408 (484)
152 COG5010 TadD Flp pilus assembl 95.3 0.099 2.1E-06 52.0 9.3 72 11-82 133-204 (257)
153 COG4235 Cytochrome c biogenesi 95.1 0.089 1.9E-06 53.5 8.4 57 28-84 138-194 (287)
154 PF13371 TPR_9: Tetratricopept 95.0 0.056 1.2E-06 43.0 5.7 43 11-53 28-70 (73)
155 PF13174 TPR_6: Tetratricopept 95.0 0.037 8.1E-07 36.4 3.8 32 47-78 1-32 (33)
156 COG1729 Uncharacterized protei 95.0 0.18 4E-06 50.7 10.2 70 15-84 144-216 (262)
157 KOG1337 N-methyltransferase [G 94.9 0.018 3.9E-07 64.2 3.1 61 373-441 230-291 (472)
158 KOG4642 Chaperone-dependent E3 94.9 0.06 1.3E-06 52.7 6.2 64 19-82 17-80 (284)
159 PF09295 ChAPs: ChAPs (Chs5p-A 94.8 0.095 2.1E-06 56.5 8.3 58 15-72 237-294 (395)
160 COG2956 Predicted N-acetylgluc 94.8 0.097 2.1E-06 53.5 7.5 71 9-79 177-247 (389)
161 PRK11906 transcriptional regul 94.8 0.12 2.7E-06 55.7 8.8 73 10-82 293-374 (458)
162 PF13429 TPR_15: Tetratricopep 94.7 0.041 8.9E-07 56.8 5.2 70 12-81 180-249 (280)
163 COG4783 Putative Zn-dependent 94.6 0.26 5.7E-06 53.2 10.8 68 12-79 306-373 (484)
164 COG2956 Predicted N-acetylgluc 94.5 0.1 2.2E-06 53.4 7.1 64 17-80 219-283 (389)
165 smart00028 TPR Tetratricopepti 94.5 0.055 1.2E-06 34.3 3.6 33 13-45 2-34 (34)
166 COG4976 Predicted methyltransf 94.5 0.058 1.3E-06 52.5 5.0 62 20-81 3-64 (287)
167 KOG1128 Uncharacterized conser 94.5 0.078 1.7E-06 59.5 6.6 69 9-77 516-584 (777)
168 KOG0376 Serine-threonine phosp 94.4 0.033 7.2E-07 59.8 3.5 68 12-79 4-71 (476)
169 PF13176 TPR_7: Tetratricopept 94.2 0.038 8.3E-07 37.6 2.3 28 48-75 1-28 (36)
170 KOG1710 MYND Zn-finger and ank 94.2 0.0086 1.9E-07 59.5 -1.3 34 162-197 319-352 (396)
171 KOG1308 Hsp70-interacting prot 94.0 0.014 3.1E-07 59.9 -0.1 61 20-80 122-182 (377)
172 KOG1127 TPR repeat-containing 94.0 0.1 2.2E-06 60.4 6.5 60 21-80 11-71 (1238)
173 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 0.18 3.9E-06 54.4 7.6 40 41-80 70-109 (453)
174 PF13432 TPR_16: Tetratricopep 93.7 0.17 3.6E-06 39.3 5.4 37 10-46 29-65 (65)
175 KOG3824 Huntingtin interacting 93.7 0.27 5.9E-06 49.9 8.0 74 9-82 113-186 (472)
176 PF12569 NARP1: NMDA receptor- 93.6 0.48 1E-05 53.1 10.9 70 13-82 5-74 (517)
177 smart00317 SET SET (Su(var)3-9 93.6 0.042 9.1E-07 48.0 2.0 34 122-155 2-35 (116)
178 PRK14574 hmsH outer membrane p 93.4 0.41 8.9E-06 56.8 10.4 70 12-81 102-171 (822)
179 COG4235 Cytochrome c biogenesi 93.2 0.74 1.6E-05 47.0 10.5 67 14-80 158-227 (287)
180 PF04733 Coatomer_E: Coatomer 93.2 0.37 8E-06 50.0 8.6 54 27-80 182-235 (290)
181 KOG0543 FKBP-type peptidyl-pro 93.2 0.25 5.4E-06 52.3 7.2 68 11-78 290-358 (397)
182 PRK14720 transcript cleavage f 92.9 0.38 8.2E-06 56.9 9.1 62 13-75 117-178 (906)
183 cd05804 StaR_like StaR_like; a 92.9 0.35 7.6E-06 51.5 8.3 67 12-78 148-218 (355)
184 COG1729 Uncharacterized protei 92.8 0.65 1.4E-05 46.8 9.3 80 8-87 174-256 (262)
185 KOG2376 Signal recognition par 92.7 0.57 1.2E-05 51.7 9.3 64 13-79 80-143 (652)
186 PF13176 TPR_7: Tetratricopept 92.6 0.25 5.4E-06 33.5 4.4 29 14-42 1-29 (36)
187 KOG2796 Uncharacterized conser 92.5 0.34 7.4E-06 48.3 6.7 72 11-82 251-322 (366)
188 KOG1129 TPR repeat-containing 92.4 0.19 4.2E-06 51.4 5.0 71 11-81 357-430 (478)
189 PRK10747 putative protoheme IX 92.0 1.4 3E-05 48.0 11.7 73 15-87 121-194 (398)
190 KOG2002 TPR-containing nuclear 92.0 0.83 1.8E-05 53.2 9.9 82 9-90 493-574 (1018)
191 PF14561 TPR_20: Tetratricopep 91.7 1.4 3E-05 37.1 8.7 49 31-79 7-55 (90)
192 COG2976 Uncharacterized protei 91.7 1.2 2.6E-05 42.7 9.0 76 4-81 118-194 (207)
193 COG4105 ComL DNA uptake lipopr 91.5 1.3 2.8E-05 44.3 9.6 73 10-82 32-107 (254)
194 PRK10747 putative protoheme IX 91.5 1 2.2E-05 49.1 9.9 58 24-81 306-363 (398)
195 KOG1156 N-terminal acetyltrans 91.4 0.55 1.2E-05 52.3 7.4 67 16-82 45-111 (700)
196 KOG1174 Anaphase-promoting com 91.4 0.34 7.3E-06 51.2 5.5 62 19-80 307-368 (564)
197 PF06552 TOM20_plant: Plant sp 91.3 0.54 1.2E-05 44.5 6.3 55 26-80 5-69 (186)
198 PF15015 NYD-SP12_N: Spermatog 91.1 0.51 1.1E-05 50.0 6.5 65 10-74 226-290 (569)
199 PRK14574 hmsH outer membrane p 91.1 2.2 4.7E-05 50.8 12.6 74 8-81 412-485 (822)
200 KOG1129 TPR repeat-containing 91.0 0.81 1.7E-05 47.0 7.7 77 16-93 227-303 (478)
201 KOG3785 Uncharacterized conser 90.5 0.32 6.9E-06 50.3 4.4 60 13-72 58-117 (557)
202 KOG1079 Transcriptional repres 90.4 0.24 5.3E-06 55.1 3.6 43 379-421 665-711 (739)
203 PF13174 TPR_6: Tetratricopept 90.3 0.53 1.1E-05 30.7 4.0 31 14-44 2-32 (33)
204 KOG3364 Membrane protein invol 90.2 3.3 7.2E-05 37.3 9.8 85 10-94 30-119 (149)
205 PF13824 zf-Mss51: Zinc-finger 90.0 0.23 5E-06 37.1 2.1 31 165-195 2-33 (55)
206 KOG0495 HAT repeat protein [RN 89.8 1.3 2.8E-05 49.6 8.5 78 15-92 654-731 (913)
207 PF13374 TPR_10: Tetratricopep 89.7 0.78 1.7E-05 31.6 4.7 30 12-41 2-31 (42)
208 TIGR00540 hemY_coli hemY prote 89.6 1.6 3.5E-05 47.8 9.4 69 14-82 120-189 (409)
209 TIGR00540 hemY_coli hemY prote 89.6 3.3 7.1E-05 45.3 11.8 70 11-80 83-152 (409)
210 KOG2003 TPR repeat-containing 89.3 0.49 1.1E-05 50.3 4.7 73 6-78 448-522 (840)
211 KOG1174 Anaphase-promoting com 89.2 2.5 5.4E-05 45.0 9.6 77 14-91 440-516 (564)
212 PF10516 SHNi-TPR: SHNi-TPR; 89.1 0.56 1.2E-05 32.4 3.4 29 47-75 2-30 (38)
213 KOG2003 TPR repeat-containing 89.1 1.7 3.7E-05 46.4 8.4 72 9-80 487-558 (840)
214 PF14559 TPR_19: Tetratricopep 89.0 0.53 1.2E-05 36.6 3.8 44 11-54 24-67 (68)
215 KOG1127 TPR repeat-containing 89.0 0.65 1.4E-05 54.1 5.7 67 14-80 564-630 (1238)
216 KOG0545 Aryl-hydrocarbon recep 88.3 1.6 3.5E-05 43.2 7.1 70 11-80 177-264 (329)
217 KOG3060 Uncharacterized conser 87.5 5.5 0.00012 39.8 10.3 68 13-80 121-188 (289)
218 PF04733 Coatomer_E: Coatomer 86.0 1.5 3.3E-05 45.5 6.1 74 12-85 201-275 (290)
219 PF09295 ChAPs: ChAPs (Chs5p-A 85.8 7.3 0.00016 42.2 11.3 69 18-86 206-274 (395)
220 PRK10153 DNA-binding transcrip 85.8 2.2 4.8E-05 48.0 7.7 70 11-80 375-454 (517)
221 KOG1156 N-terminal acetyltrans 85.7 3.9 8.4E-05 45.9 9.1 71 10-80 369-439 (700)
222 PF14938 SNAP: Soluble NSF att 85.5 1.7 3.7E-05 44.9 6.2 68 9-76 111-185 (282)
223 COG3629 DnrI DNA-binding trans 85.3 4.4 9.4E-05 41.5 8.8 67 9-75 150-216 (280)
224 KOG1173 Anaphase-promoting com 84.7 2.2 4.7E-05 47.1 6.5 69 11-79 311-379 (611)
225 KOG4507 Uncharacterized conser 84.5 3.2 7E-05 45.9 7.6 69 14-82 644-712 (886)
226 PRK14720 transcript cleavage f 84.2 3 6.4E-05 49.6 7.9 35 47-81 117-151 (906)
227 PF12862 Apc5: Anaphase-promot 84.1 4.5 9.8E-05 34.1 7.1 57 20-76 6-71 (94)
228 KOG1130 Predicted G-alpha GTPa 83.7 0.45 9.8E-06 50.2 0.9 66 10-75 193-264 (639)
229 PF13431 TPR_17: Tetratricopep 82.8 0.81 1.8E-05 30.7 1.6 23 10-32 11-33 (34)
230 COG4700 Uncharacterized protei 82.3 6.8 0.00015 37.4 7.9 67 14-80 126-194 (251)
231 KOG1338 Uncharacterized conser 82.1 3.8 8.3E-05 43.2 6.8 87 326-421 174-261 (466)
232 KOG3060 Uncharacterized conser 81.0 8.4 0.00018 38.6 8.5 72 11-82 51-122 (289)
233 KOG2376 Signal recognition par 80.6 8 0.00017 43.1 8.9 61 14-74 112-203 (652)
234 KOG4814 Uncharacterized conser 80.3 3.9 8.5E-05 45.7 6.5 70 11-80 353-428 (872)
235 PF14938 SNAP: Soluble NSF att 80.2 8.4 0.00018 39.7 8.9 71 9-79 152-229 (282)
236 TIGR03504 FimV_Cterm FimV C-te 80.1 5.7 0.00012 28.4 5.2 25 50-74 3-27 (44)
237 KOG4340 Uncharacterized conser 79.9 3.1 6.7E-05 42.4 5.1 59 12-70 144-202 (459)
238 KOG3081 Vesicle coat complex C 79.7 13 0.00028 37.5 9.3 35 45-79 206-240 (299)
239 PF09889 DUF2116: Uncharacteri 79.5 1.1 2.4E-05 34.2 1.5 27 162-197 3-29 (59)
240 KOG4162 Predicted calmodulin-b 79.2 12 0.00025 43.1 9.9 71 10-80 648-718 (799)
241 PF07720 TPR_3: Tetratricopept 78.8 6.2 0.00013 26.9 4.8 33 47-79 2-36 (36)
242 KOG1081 Transcription factor N 78.5 0.83 1.8E-05 50.4 0.8 50 372-421 363-417 (463)
243 COG0457 NrfG FOG: TPR repeat [ 78.3 12 0.00026 35.0 8.9 58 21-78 139-199 (291)
244 COG0457 NrfG FOG: TPR repeat [ 77.8 11 0.00025 35.2 8.6 66 13-78 60-127 (291)
245 PLN03158 methionine aminopepti 77.0 1.2 2.6E-05 48.2 1.5 36 162-200 9-51 (396)
246 KOG1839 Uncharacterized protei 76.8 12 0.00025 45.7 9.5 63 596-658 1002-1065(1236)
247 PF09986 DUF2225: Uncharacteri 75.3 29 0.00062 34.3 10.5 69 9-77 115-196 (214)
248 COG4700 Uncharacterized protei 75.2 15 0.00033 35.1 7.9 54 20-74 64-117 (251)
249 KOG1130 Predicted G-alpha GTPa 75.2 4.2 9.1E-05 43.2 4.7 68 8-75 231-304 (639)
250 PF10516 SHNi-TPR: SHNi-TPR; 75.1 5 0.00011 27.7 3.6 30 13-42 2-31 (38)
251 KOG2610 Uncharacterized conser 74.8 11 0.00024 39.2 7.4 69 10-80 137-209 (491)
252 COG3947 Response regulator con 73.6 14 0.0003 37.8 7.7 63 10-72 277-339 (361)
253 KOG3785 Uncharacterized conser 73.3 12 0.00025 39.3 7.2 66 21-86 160-225 (557)
254 PF10300 DUF3808: Protein of u 73.1 12 0.00026 41.7 8.1 66 12-77 267-336 (468)
255 PF03704 BTAD: Bacterial trans 70.3 51 0.0011 29.8 10.5 67 15-81 9-97 (146)
256 cd02682 MIT_AAA_Arch MIT: doma 69.0 46 0.001 26.9 8.4 29 62-90 29-57 (75)
257 COG4105 ComL DNA uptake lipopr 67.3 50 0.0011 33.3 10.1 84 9-92 68-162 (254)
258 PF12968 DUF3856: Domain of Un 67.3 51 0.0011 29.2 8.8 64 11-74 6-83 (144)
259 PF09986 DUF2225: Uncharacteri 66.9 26 0.00057 34.5 8.2 50 598-647 107-157 (214)
260 COG3071 HemY Uncharacterized e 66.7 26 0.00056 37.3 8.3 48 36-83 318-365 (400)
261 PF07721 TPR_4: Tetratricopept 65.3 10 0.00022 23.5 3.2 22 48-69 3-24 (26)
262 KOG1085 Predicted methyltransf 65.3 6.8 0.00015 39.4 3.5 28 121-148 257-284 (392)
263 COG3118 Thioredoxin domain-con 64.6 29 0.00063 35.6 8.0 54 18-71 140-193 (304)
264 PF04438 zf-HIT: HIT zinc fing 64.5 3.5 7.6E-05 26.8 1.0 28 163-194 3-30 (30)
265 COG4941 Predicted RNA polymera 64.5 34 0.00073 35.8 8.4 78 15-92 332-411 (415)
266 PF09205 DUF1955: Domain of un 64.3 49 0.0011 29.9 8.3 62 14-75 87-149 (161)
267 PRK04841 transcriptional regul 63.3 21 0.00045 43.3 8.2 67 14-80 693-765 (903)
268 PF07721 TPR_4: Tetratricopept 63.3 9.5 0.00021 23.6 2.8 24 13-36 2-25 (26)
269 PF10571 UPF0547: Uncharacteri 62.6 4.9 0.00011 25.2 1.3 23 164-186 2-24 (26)
270 KOG1941 Acetylcholine receptor 61.5 13 0.00029 39.0 5.0 72 8-79 79-155 (518)
271 PF14863 Alkyl_sulf_dimr: Alky 61.5 27 0.00059 31.9 6.6 43 46-88 70-112 (141)
272 PF02259 FAT: FAT domain; Int 61.4 28 0.00061 36.6 7.9 52 8-59 248-305 (352)
273 KOG3364 Membrane protein invol 60.6 20 0.00042 32.5 5.2 38 13-50 72-109 (149)
274 PF07079 DUF1347: Protein of u 60.6 97 0.0021 33.9 11.2 65 10-79 461-525 (549)
275 PF12855 Ecl1: Life-span regul 59.5 5.5 0.00012 28.3 1.3 31 162-198 6-36 (43)
276 KOG2857 Predicted MYND Zn-fing 59.3 4.9 0.00011 36.0 1.2 31 162-195 5-35 (157)
277 PF04212 MIT: MIT (microtubule 59.1 84 0.0018 24.5 8.6 24 68-91 34-57 (69)
278 PRK00418 DNA gyrase inhibitor; 59.0 6.5 0.00014 30.3 1.7 12 186-197 26-37 (62)
279 KOG3612 PHD Zn-finger protein 58.9 2.1 4.6E-05 46.8 -1.3 41 161-207 526-566 (588)
280 COG3914 Spy Predicted O-linked 58.4 52 0.0011 37.0 9.1 64 18-81 73-137 (620)
281 COG3071 HemY Uncharacterized e 58.1 1E+02 0.0023 32.9 10.9 54 18-71 159-212 (400)
282 KOG1585 Protein required for f 58.0 84 0.0018 31.6 9.5 65 11-75 30-100 (308)
283 KOG1941 Acetylcholine receptor 58.0 32 0.0007 36.3 7.0 73 4-76 198-276 (518)
284 PF10300 DUF3808: Protein of u 57.7 28 0.00061 38.8 7.2 48 28-75 249-296 (468)
285 KOG2461 Transcription factor B 57.6 5.2 0.00011 43.2 1.4 27 396-422 120-146 (396)
286 PF04184 ST7: ST7 protein; In 57.2 53 0.0012 36.3 8.8 32 48-79 261-292 (539)
287 PF10013 DUF2256: Uncharacteri 56.6 4.7 0.0001 28.3 0.5 10 185-194 31-40 (42)
288 PF04184 ST7: ST7 protein; In 56.5 50 0.0011 36.5 8.4 66 10-75 257-324 (539)
289 PF10579 Rapsyn_N: Rapsyn N-te 56.4 94 0.002 25.4 7.9 60 12-71 6-68 (80)
290 PLN03081 pentatricopeptide (PP 56.1 27 0.00059 41.1 7.2 65 13-79 463-527 (697)
291 KOG4340 Uncharacterized conser 55.9 28 0.0006 35.7 6.0 59 22-80 20-78 (459)
292 PF13240 zinc_ribbon_2: zinc-r 55.8 6.5 0.00014 23.9 1.0 22 164-185 1-22 (23)
293 cd02683 MIT_1 MIT: domain cont 54.8 1.1E+02 0.0024 24.8 8.4 30 62-91 29-58 (77)
294 KOG1586 Protein required for f 54.7 84 0.0018 31.4 8.9 85 14-98 156-249 (288)
295 KOG4814 Uncharacterized conser 53.7 45 0.00097 37.8 7.6 66 10-75 392-457 (872)
296 PF04570 DUF581: Protein of un 53.5 9 0.00019 29.2 1.7 35 162-196 16-50 (58)
297 PF08666 SAF: SAF domain; Int 53.4 5.8 0.00013 30.3 0.7 15 132-146 2-16 (63)
298 PRK01343 zinc-binding protein; 53.0 10 0.00022 28.7 1.9 27 163-197 10-36 (57)
299 PHA02537 M terminase endonucle 52.9 54 0.0012 32.7 7.5 35 58-93 190-224 (230)
300 PRK04841 transcriptional regul 52.6 57 0.0012 39.6 9.4 67 9-75 449-520 (903)
301 PF10373 EST1_DNA_bind: Est1 D 51.5 50 0.0011 33.5 7.5 61 31-91 1-62 (278)
302 KOG4442 Clathrin coat binding 51.2 8.8 0.00019 43.5 1.9 29 120-148 120-148 (729)
303 PF03884 DUF329: Domain of unk 50.0 8.9 0.00019 29.1 1.2 31 164-198 4-34 (57)
304 PF14561 TPR_20: Tetratricopep 49.5 88 0.0019 26.1 7.3 50 12-61 22-73 (90)
305 smart00745 MIT Microtubule Int 49.0 43 0.00094 26.8 5.2 33 61-93 30-62 (77)
306 KOG3081 Vesicle coat complex C 48.2 71 0.0015 32.5 7.4 71 12-82 207-278 (299)
307 KOG1464 COP9 signalosome, subu 46.4 52 0.0011 33.3 6.2 51 24-74 39-93 (440)
308 cd02340 ZZ_NBR1_like Zinc fing 44.6 14 0.0003 26.3 1.4 32 164-196 2-33 (43)
309 TIGR02059 swm_rep_I cyanobacte 44.1 37 0.0008 28.9 4.0 24 398-421 75-98 (101)
310 KOG2396 HAT (Half-A-TPR) repea 43.4 1.2E+02 0.0025 33.7 8.6 61 22-82 114-176 (568)
311 KOG0495 HAT repeat protein [RN 43.1 78 0.0017 36.2 7.5 66 15-80 820-885 (913)
312 COG2888 Predicted Zn-ribbon RN 43.1 15 0.00034 27.8 1.5 44 162-209 9-57 (61)
313 PF13248 zf-ribbon_3: zinc-rib 43.0 13 0.00029 23.1 1.0 23 163-185 3-25 (26)
314 PF12862 Apc5: Anaphase-promot 41.7 51 0.0011 27.6 4.8 32 10-41 39-70 (94)
315 COG4455 ImpE Protein of avirul 41.6 1.3E+02 0.0029 29.7 7.9 62 20-81 9-70 (273)
316 PLN03218 maturation of RBCL 1; 41.3 2.3E+02 0.0049 35.2 11.9 68 12-79 649-719 (1060)
317 COG4068 Uncharacterized protei 41.0 15 0.00033 27.6 1.2 24 162-194 8-31 (64)
318 TIGR03504 FimV_Cterm FimV C-te 40.7 50 0.0011 23.6 3.7 26 16-41 3-28 (44)
319 PLN03218 maturation of RBCL 1; 40.5 2.2E+02 0.0048 35.3 11.7 63 12-75 542-608 (1060)
320 PF14949 ARF7EP_C: ARF7 effect 40.3 15 0.00033 31.5 1.2 28 159-194 64-91 (103)
321 cd02656 MIT MIT: domain contai 38.5 87 0.0019 24.9 5.4 32 62-93 29-60 (75)
322 PF11846 DUF3366: Domain of un 38.0 1.7E+02 0.0036 28.1 8.4 52 28-80 127-178 (193)
323 KOG0546 HSP90 co-chaperone CPR 37.9 53 0.0011 34.7 4.9 52 11-62 308-359 (372)
324 PF10602 RPN7: 26S proteasome 37.8 1.9E+02 0.0041 27.5 8.5 63 12-74 36-101 (177)
325 KOG2053 Mitochondrial inherita 36.4 1.1E+02 0.0024 36.2 7.5 64 15-79 46-110 (932)
326 PLN03077 Protein ECB2; Provisi 36.2 1.2E+02 0.0027 36.5 8.7 68 12-81 625-692 (857)
327 cd02677 MIT_SNX15 MIT: domain 34.5 1.5E+02 0.0032 23.9 6.0 57 29-93 4-60 (75)
328 COG3898 Uncharacterized membra 34.3 1.6E+02 0.0035 31.6 7.8 70 10-80 228-297 (531)
329 COG1579 Zn-ribbon protein, pos 34.3 17 0.00037 36.3 0.7 27 161-187 196-232 (239)
330 COG3024 Uncharacterized protei 34.1 23 0.00049 27.4 1.2 13 185-197 26-38 (65)
331 PF07720 TPR_3: Tetratricopept 33.3 1.5E+02 0.0033 20.0 5.1 30 15-44 4-35 (36)
332 COG3914 Spy Predicted O-linked 33.0 1.4E+02 0.0031 33.6 7.5 70 11-80 100-176 (620)
333 KOG1338 Uncharacterized conser 32.3 18 0.0004 38.3 0.6 19 130-148 40-58 (466)
334 PF14863 Alkyl_sulf_dimr: Alky 32.0 1.9E+02 0.004 26.5 7.1 50 14-63 72-121 (141)
335 COG2075 RPL24A Ribosomal prote 32.0 18 0.00039 28.1 0.4 33 163-195 4-39 (66)
336 cd02684 MIT_2 MIT: domain cont 31.8 2E+02 0.0042 23.1 6.4 33 62-94 29-61 (75)
337 COG3118 Thioredoxin domain-con 31.5 2.3E+02 0.0051 29.3 8.3 44 35-78 225-268 (304)
338 KOG4317 Predicted Zn-finger pr 31.1 22 0.00047 36.4 0.9 32 161-195 6-37 (383)
339 PF14803 Nudix_N_2: Nudix N-te 31.0 15 0.00032 24.8 -0.2 24 164-187 2-33 (34)
340 PF07754 DUF1610: Domain of un 30.5 30 0.00066 21.3 1.1 20 165-184 1-24 (24)
341 PF05843 Suf: Suppressor of fo 30.0 2.5E+02 0.0055 28.8 8.6 68 13-80 36-104 (280)
342 PF04781 DUF627: Protein of un 29.9 1.9E+02 0.0042 25.2 6.4 62 18-79 2-77 (111)
343 KOG2471 TPR repeat-containing 29.4 91 0.002 34.4 5.2 43 14-56 337-379 (696)
344 COG4338 Uncharacterized protei 29.3 18 0.00038 26.1 -0.0 10 185-194 35-44 (54)
345 cd02680 MIT_calpain7_2 MIT: do 29.1 2.2E+02 0.0047 23.0 6.1 25 50-74 10-34 (75)
346 cd02249 ZZ Zinc finger, ZZ typ 28.8 37 0.0008 24.3 1.6 33 164-197 2-34 (46)
347 PF09613 HrpB1_HrpK: Bacterial 28.8 4.9E+02 0.011 24.4 10.4 69 13-81 11-79 (160)
348 smart00858 SAF This domain fam 28.4 27 0.00058 26.6 0.8 16 132-147 2-17 (64)
349 KOG2471 TPR repeat-containing 28.3 1.3E+02 0.0028 33.2 6.1 59 9-68 506-569 (696)
350 PF11817 Foie-gras_1: Foie gra 28.0 3E+02 0.0065 27.6 8.6 55 607-663 176-231 (247)
351 PF07975 C1_4: TFIIH C1-like d 27.9 36 0.00078 25.2 1.3 31 164-196 1-39 (51)
352 PRK10941 hypothetical protein; 27.3 1.3E+02 0.0028 30.9 5.8 43 13-55 216-258 (269)
353 PF09538 FYDLN_acid: Protein o 27.1 41 0.00088 29.3 1.8 27 160-186 7-36 (108)
354 PF13281 DUF4071: Domain of un 27.0 2.6E+02 0.0056 30.2 8.1 67 13-79 180-259 (374)
355 KOG2053 Mitochondrial inherita 26.8 2.4E+02 0.0053 33.5 8.3 58 23-80 20-77 (932)
356 KOG1915 Cell cycle control pro 26.7 1.2E+02 0.0026 33.4 5.4 65 13-80 405-471 (677)
357 PF10255 Paf67: RNA polymerase 26.6 1.1E+02 0.0024 33.2 5.4 55 19-74 129-192 (404)
358 cd02678 MIT_VPS4 MIT: domain c 26.5 3.3E+02 0.0072 21.6 8.2 32 62-93 29-60 (75)
359 PLN03077 Protein ECB2; Provisi 25.9 2.6E+02 0.0057 33.7 9.1 60 19-82 531-592 (857)
360 PRK14890 putative Zn-ribbon RN 25.8 61 0.0013 24.7 2.3 45 161-209 6-55 (59)
361 PF11817 Foie-gras_1: Foie gra 25.4 4.5E+02 0.0098 26.3 9.4 24 50-73 182-205 (247)
362 PF02561 FliS: Flagellar prote 25.4 4E+02 0.0087 23.4 8.0 88 543-641 21-111 (122)
363 PF08772 NOB1_Zn_bind: Nin one 24.6 34 0.00073 27.5 0.8 24 162-185 9-33 (73)
364 COG1439 Predicted nucleic acid 24.4 39 0.00084 32.0 1.3 26 161-186 138-163 (177)
365 PF04910 Tcf25: Transcriptiona 24.4 2.9E+02 0.0062 29.6 8.1 69 11-79 39-136 (360)
366 PLN03081 pentatricopeptide (PP 24.2 2.9E+02 0.0062 32.5 8.8 68 12-82 259-328 (697)
367 TIGR03586 PseI pseudaminic aci 24.0 32 0.00068 36.4 0.6 21 130-150 274-294 (327)
368 KOG1839 Uncharacterized protei 23.9 3.2E+02 0.0069 34.0 8.9 62 596-657 1086-1148(1236)
369 COG2976 Uncharacterized protei 23.8 2.9E+02 0.0062 26.9 6.9 60 12-71 89-151 (207)
370 KOG2610 Uncharacterized conser 23.4 1.6E+02 0.0035 31.0 5.5 61 19-79 110-171 (491)
371 cd02681 MIT_calpain7_1 MIT: do 23.1 2.7E+02 0.0058 22.5 5.7 10 59-68 19-28 (76)
372 PF11207 DUF2989: Protein of u 22.9 2.3E+02 0.005 27.6 6.2 45 22-66 150-198 (203)
373 PF03604 DNA_RNApol_7kD: DNA d 22.9 50 0.0011 21.9 1.2 21 164-184 2-25 (32)
374 cd02681 MIT_calpain7_1 MIT: do 22.9 4.1E+02 0.0089 21.4 6.9 29 12-40 6-34 (76)
375 PRK05685 fliS flagellar protei 22.2 1.5E+02 0.0033 26.6 4.7 33 609-641 35-68 (132)
376 KOG4236 Serine/threonine prote 21.7 38 0.00082 37.6 0.7 59 135-195 117-190 (888)
377 PF01239 PPTA: Protein prenylt 21.5 2.3E+02 0.005 18.0 4.7 29 31-59 2-30 (31)
378 TIGR03569 NeuB_NnaB N-acetylne 21.5 40 0.00086 35.7 0.8 21 130-150 276-296 (329)
379 PF05843 Suf: Suppressor of fo 21.3 2.4E+02 0.0052 28.9 6.6 68 14-81 3-71 (280)
380 PF04212 MIT: MIT (microtubule 21.2 1.9E+02 0.0042 22.4 4.6 20 55-74 14-33 (69)
381 cd02682 MIT_AAA_Arch MIT: doma 21.0 1.9E+02 0.0041 23.4 4.4 31 11-41 5-35 (75)
382 PF09613 HrpB1_HrpK: Bacterial 20.9 2.6E+02 0.0056 26.2 5.9 46 18-63 50-95 (160)
383 smart00386 HAT HAT (Half-A-TPR 20.8 2.2E+02 0.0047 17.4 4.4 28 27-54 2-29 (33)
384 COG5191 Uncharacterized conser 20.6 1.6E+02 0.0034 30.8 4.7 60 23-82 118-178 (435)
385 PRK14891 50S ribosomal protein 20.5 51 0.0011 29.3 1.1 35 162-196 4-41 (131)
386 PF08631 SPO22: Meiosis protei 20.1 4.9E+02 0.011 26.6 8.5 62 4-65 27-103 (278)
No 1
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=99.88 E-value=5.3e-21 Score=213.61 Aligned_cols=234 Identities=20% Similarity=0.251 Sum_probs=154.6
Q ss_pred eeEEEeccccccccCCCcCCcEEEEeCCEEEEEEeecCCCCC-ceeeecCCCCCCCCHHHHHHHhhcCCCeeeeccCCCC
Q 048211 371 RVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGY-PLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSE 449 (665)
Q Consensus 371 ~~g~glyp~~Sl~NHSC~PN~~~~f~g~~~~vrA~r~I~~Ge-eI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~ 449 (665)
..|.|+||..+++||||.||+...|++....+++...+.+++ +|+++|++. .+++..||..|+..|+|.|.|+||.+
T Consensus 197 ~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~--~~~~~~r~~~l~~~~~f~c~c~rc~d 274 (482)
T KOG2084|consen 197 FLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDP--LLSTASRQKQLRQSKLFSCQCPRCLD 274 (482)
T ss_pred cceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeeccc--ccCHHHHHHHHhhccceeeecCCCCC
Confidence 589999999999999999999999999999999999998887 999999986 69999999999999999999999999
Q ss_pred CccCCccccceecCCCCCCCcccCCcccchhhhhhccCCCCCCCCCCccccccCCCCchhHHHHHHHHhhhcCCccccCC
Q 048211 450 LNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLEENNRTSRYGP 529 (665)
Q Consensus 450 ~~~~d~~~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 529 (665)
+++.+++.++++|.+.+|.+.+.+..... ....
T Consensus 275 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-----------------------------------------------~~~~ 307 (482)
T KOG2084|consen 275 PTELGTFLSSLRCENCTCGGLLGTSFLDK-----------------------------------------------EDLQ 307 (482)
T ss_pred CCccccchhhhhhcCCCCCCccCCCcccc-----------------------------------------------cCCC
Confidence 99989999999999888876654422100 0123
Q ss_pred ccccccCccccchhhhhhHHHHHH-------------HHHHHHHHH-------------hHHhhHHHHHH---HHHHHHH
Q 048211 530 GYCLKCGSDRDLESSYATVDEAWI-------------YIRRLQDAI-------------ISKEISRAVLL---DASRFLG 580 (665)
Q Consensus 530 ~~C~~C~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-------------~~~~~~~~~~~---~~~~~l~ 580 (665)
|.|..|........+......... .+..-+..+ ....+...... .......
T Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 387 (482)
T KOG2084|consen 308 WPCTECALVRLKAYVVESREELQNELLDAFSDLLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLGAFLSCSPNAE 387 (482)
T ss_pred ccccccccchhHHHHHHHHHHHHhhccccCChhhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHhhhhccchhhH
Confidence 555555433322111111111000 000000000 00000000000 0000000
Q ss_pred hHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhH
Q 048211 581 LLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHL 653 (665)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~ 653 (665)
.....-..+...+..++..+++..++..++..+.++....+++....+ ........++...++.++...-...
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (482)
T KOG2084|consen 388 LERLLNLFECRELLKALRDVKPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDLDKLSEEE 461 (482)
T ss_pred HHHHHHhhhhhHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHhhhhhHHH
Confidence 001111111355677889999999999999999999999887766666 7777777777777777776654433
No 2
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.60 E-value=4e-15 Score=139.87 Aligned_cols=50 Identities=36% Similarity=0.613 Sum_probs=45.4
Q ss_pred ceeEEEeccccccccCCCcCCcEEEEe----CCEEEEEEeecCCCCCceeeecC
Q 048211 370 VRVGLAIYTAGSLFNHSCLPNIHAYFL----SRTLMIRTTEFVPSGYPLELSYG 419 (665)
Q Consensus 370 ~~~g~glyp~~Sl~NHSC~PN~~~~f~----g~~~~vrA~r~I~~GeeI~isY~ 419 (665)
...+.+|||.++|+||||.||+.+.|. ++.++|+|.|||++|||||||||
T Consensus 109 ~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 109 DRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 457899999999999999999999998 78999999999999999999997
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=136.27 Aligned_cols=85 Identities=25% Similarity=0.347 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
.++.|.|||+||.+||.|+.|++||+.||.+||.|.|+|-|+|.+|+.+|+|++|++.|++||+++|+|+..++-++.++
T Consensus 114 nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 114 NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999996666555555
Q ss_pred HHHhc
Q 048211 91 IILDQ 95 (665)
Q Consensus 91 ~~~~~ 95 (665)
..+.+
T Consensus 194 ~~l~e 198 (304)
T KOG0553|consen 194 QKLNE 198 (304)
T ss_pred HHhcC
Confidence 55543
No 4
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.8e-12 Score=120.52 Aligned_cols=89 Identities=24% Similarity=0.392 Sum_probs=79.2
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
..++.+.+|.|||+|+++++.|+.|+.||.+||+++|.|.||+.|||.+|.++..|++|++||.+.++++|+....++..
T Consensus 129 ~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 129 STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999987555555
Q ss_pred HHHHHHHhc
Q 048211 87 SELKIILDQ 95 (665)
Q Consensus 87 ~~l~~~~~~ 95 (665)
.++..++.+
T Consensus 209 ~rl~~~i~e 217 (271)
T KOG4234|consen 209 ARLPPKINE 217 (271)
T ss_pred HhcCHHHHH
Confidence 555444443
No 5
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.3e-11 Score=124.55 Aligned_cols=76 Identities=28% Similarity=0.360 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ 84 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 84 (665)
.++-.+|.|.|+||+++++|.+|+..|++||+++|+|+||+||||+|+..+|+|+.|+.+|+++++++|+|.++..
T Consensus 254 ~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 254 ALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999999999999999986543
No 6
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-10 Score=119.84 Aligned_cols=93 Identities=31% Similarity=0.450 Sum_probs=81.6
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 1 MDANDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 1 ~~~~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
|..||.+.+.++.+|.|||+++.++|+..+|+.||+.|+++||.|.|||.|||+|+..+++|++|++||++|.+.+.+..
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCE 355 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999987743
Q ss_pred HHHHHHHHHHHHHh
Q 048211 81 GKKQIESELKIILD 94 (665)
Q Consensus 81 ~~~~~~~~l~~~~~ 94 (665)
..+.+++++..++
T Consensus 356 -~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 356 -IRRTLREAQLALK 368 (486)
T ss_pred -hHHHHHHHHHHHH
Confidence 3344445544444
No 7
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.01 E-value=1.2e-09 Score=87.36 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE-NHDDAVHDLTIAKNRES 77 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~-~~~~A~~~~~~al~l~p 77 (665)
.|..|.++|.+++++|+|++|+..+++|++++|+++.+|+++|.++..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999999999999999999999999999 79999999999999988
No 8
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.7e-10 Score=116.63 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
+.++|.||+++|..+|+|++|+.|..+.++++|+++|+|.|+|.++..||+|++|+..|.++|+.+|+|......+.+..
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 77889999999999999999999999999999999999999999999999999999999999999999987665555554
No 9
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.4e-09 Score=113.72 Aligned_cols=80 Identities=25% Similarity=0.320 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL 89 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l 89 (665)
..+.+|.|||+||.+++.+..|+.||++++++||++.|+|+|+|.|+..|.+|+.|.+.|+++++++|++.......++.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC 469 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999987554433333
No 10
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.92 E-value=6.6e-10 Score=98.48 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=39.5
Q ss_pred EeccccccccCCCcCCcEEEEeC--C--EEEEEEeecCCCCCceeeec
Q 048211 375 AIYTAGSLFNHSCLPNIHAYFLS--R--TLMIRTTEFVPSGYPLELSY 418 (665)
Q Consensus 375 glyp~~Sl~NHSC~PN~~~~f~g--~--~~~vrA~r~I~~GeeI~isY 418 (665)
.++|.++++||||.||+.+.+.. + .+.++|+|+|++|||||++|
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 38899999999999999887653 2 69999999999999999999
No 11
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=6.7e-09 Score=108.79 Aligned_cols=64 Identities=28% Similarity=0.510 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
+.+|.|||+||..+|+|+..++||.+||++||+|+|||+|||.++..+|++.+|+.|+....-+
T Consensus 149 piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~ 212 (606)
T KOG0547|consen 149 PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCIL 212 (606)
T ss_pred chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHh
Confidence 8899999999999999999999999999999999999999999999999999999999876544
No 12
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.83 E-value=5e-09 Score=105.13 Aligned_cols=84 Identities=23% Similarity=0.249 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL 89 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l 89 (665)
.++..|.|||.+|+++++|..|..||+.|+.+|..|.|||-|||.+...||...+|.+|++.+|+++|++...++...++
T Consensus 129 ~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 129 HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 47788999999999999999999999999999999999999999999999999999999999999999987555555555
Q ss_pred HHHH
Q 048211 90 KIIL 93 (665)
Q Consensus 90 ~~~~ 93 (665)
..++
T Consensus 209 ~Sl~ 212 (536)
T KOG4648|consen 209 NSLR 212 (536)
T ss_pred cchH
Confidence 4443
No 13
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.2e-08 Score=102.42 Aligned_cols=77 Identities=27% Similarity=0.337 Sum_probs=69.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.-.|+.+++.+|+|||+|.+.+|+|..||.||.+|++++|.+.|||+|=|+|++.|.++.+|+...+..+.++-.++
T Consensus 111 kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 111 KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999888777666654443
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=7.2e-08 Score=89.35 Aligned_cols=81 Identities=12% Similarity=0.027 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
...+|.++|.++.++|+|++|+..+.+|++++|+++.+|+++|.++..+|++++|+..|++++++.|++......+..++
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 45667778888888888888888888888888888888888888888888888888888888888887755444444443
Q ss_pred H
Q 048211 91 I 91 (665)
Q Consensus 91 ~ 91 (665)
.
T Consensus 137 ~ 137 (144)
T PRK15359 137 I 137 (144)
T ss_pred H
Confidence 3
No 15
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.66 E-value=1.6e-07 Score=100.38 Aligned_cols=83 Identities=27% Similarity=0.340 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
.+.+|.|||.+|+++|+|++|+.++++|++++|+++.+|+++|.++..+|+|++|+..|+++++++|++.........++
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999987666665555
Q ss_pred HHH
Q 048211 91 IIL 93 (665)
Q Consensus 91 ~~~ 93 (665)
..+
T Consensus 115 ~kl 117 (356)
T PLN03088 115 EKI 117 (356)
T ss_pred HHH
Confidence 544
No 16
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.61 E-value=2.2e-08 Score=105.78 Aligned_cols=85 Identities=26% Similarity=0.359 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
-|..|.|||+++++.++|..|+.|+.+|++++|.+.|+|+|+|.+.+++++|.+|+.+|++...+.|+.....+...+.+
T Consensus 37 ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 37 CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999987766666766
Q ss_pred HHHhc
Q 048211 91 IILDQ 95 (665)
Q Consensus 91 ~~~~~ 95 (665)
.+..+
T Consensus 117 ~~vs~ 121 (476)
T KOG0376|consen 117 KIVSE 121 (476)
T ss_pred HHHHH
Confidence 66553
No 17
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.60 E-value=1.3e-07 Score=74.52 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 16 VNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 16 ~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.++|..+++.|+|++|+..++.+++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36889999999999999999999999999999999999999999999999999999999999863
No 18
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.52 E-value=5.7e-07 Score=72.61 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=63.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 19 ASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 19 a~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
..+|++.++|++|++.++++++++|+.+.+|+.+|.++..+|+|.+|+++|+++++..|++.....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999987665444
No 19
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.49 E-value=1e-07 Score=95.99 Aligned_cols=83 Identities=22% Similarity=0.228 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL 89 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l 89 (665)
-+-.+++.||.+|+.+|+-..|+.|++++|++.|++.-|...||.+++++|++++|..||+.++.-+|++....+.+.++
T Consensus 70 ~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl 149 (504)
T KOG0624|consen 70 NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL 149 (504)
T ss_pred hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999987666666555
Q ss_pred HHH
Q 048211 90 KII 92 (665)
Q Consensus 90 ~~~ 92 (665)
..+
T Consensus 150 ~~~ 152 (504)
T KOG0624|consen 150 ALI 152 (504)
T ss_pred HhH
Confidence 444
No 20
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=2.1e-06 Score=79.00 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL 89 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l 89 (665)
..+..|.|.|+++-.+|+|++|+.-+.+|+.++|++|.++++.|.|+..+|+.+.|.+.|+.++.+...++.-..++++.
T Consensus 67 ~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A 146 (157)
T PRK15363 67 WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA 146 (157)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence 36778889999999999999999999999999999999999999999999999999999998888764444444555555
Q ss_pred HHHHh
Q 048211 90 KIILD 94 (665)
Q Consensus 90 ~~~~~ 94 (665)
+..+.
T Consensus 147 ~~~L~ 151 (157)
T PRK15363 147 EKMLQ 151 (157)
T ss_pred HHHHH
Confidence 55543
No 21
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.37 E-value=1.1e-07 Score=65.77 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=30.6
Q ss_pred ccccccccccCCcCCCCCCCccccchHHHHhhhccccccCC
Q 048211 165 CHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCP 205 (665)
Q Consensus 165 C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC 205 (665)
|.+|+++ ...+|++|+.++|||++||+.+| ..|+.+|
T Consensus 1 C~~C~~~---~~~~C~~C~~~~YCs~~Cq~~~w-~~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKP---ALKRCSRCKSVYYCSEECQRADW-PYHKFEC 37 (37)
T ss_dssp -TTTSSC---SSEEETTTSSSEESSHHHHHHHH-HHHCCTH
T ss_pred CcCCCCC---cCCcCCCCCCEEecCHHHHHHHH-HHHhhhC
Confidence 7788884 34599999999999999999999 5677765
No 22
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=2.8e-06 Score=77.40 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..++.++|.++++.|++++|++.++++++.+|+++.+|+++|.++..+|++++|+..|+++++++|++.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 355667777777777777777777777777777777777777777777777777777777777777654
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.33 E-value=2.9e-06 Score=88.63 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=72.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.+++..+..|.+||.+|..+|++++|+.++++|++++|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus 56 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 56 RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 344556678899999999999999999999999999999999999999999999999999999999999999999864
No 24
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.5e-06 Score=82.50 Aligned_cols=70 Identities=29% Similarity=0.472 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..-++.|-++|++..|+|-++++.|..+|...|++.|||||||++....=+..+|.+||.++++++|+..
T Consensus 229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 5668999999999999999999999999999999999999999999999999999999999999999865
No 25
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.29 E-value=3e-06 Score=90.17 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=64.5
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKA---WYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka---~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.+-.+.+++|++.+|+++|+|++|+..+++||+++|+++.+ ||++|.||..+|++++|+++|++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34588999999999999999999999999999999999865 999999999999999999999999997
No 26
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.26 E-value=3.7e-06 Score=66.75 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=59.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211 22 LQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES 87 (665)
Q Consensus 22 ~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 87 (665)
+++.|+|++|++-++++++.+|+++.+++.+|.++...|++++|...+++++..+|++.....+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 467899999999999999999999999999999999999999999999999999999875554443
No 27
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.24 E-value=8.3e-07 Score=89.71 Aligned_cols=66 Identities=21% Similarity=0.464 Sum_probs=53.6
Q ss_pred Eecc-ccccccCCCcCCcEEEEeC-CEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeeccCCCCCcc
Q 048211 375 AIYT-AGSLFNHSCLPNIHAYFLS-RTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSELNT 452 (665)
Q Consensus 375 glyp-~~Sl~NHSC~PN~~~~f~g-~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~~~ 452 (665)
-||. -++++||+|.|||..+-.| .++.|+++|||++|||||.-|+..| .+ -..-.|.|.-|....+
T Consensus 191 qLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~f--FG----------~~N~~CeC~TCER~g~ 258 (453)
T KOG2589|consen 191 QLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSGF--FG----------ENNEECECVTCERRGT 258 (453)
T ss_pred hheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecccc--cC----------CCCceeEEeecccccc
Confidence 4555 4569999999999887777 7999999999999999999999865 22 2345799999986544
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.21 E-value=5.4e-06 Score=86.60 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.+|.++|.+|..+|+|++|+..+++|++++|+++.+|+++|.++...|++++|+++|+++++++|++.
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999986
No 29
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.20 E-value=1.1e-05 Score=74.79 Aligned_cols=68 Identities=12% Similarity=-0.043 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.++|.+++++|+|++|+..+++++.++|.++.+|+.+|.++..+|++++|+..|++++.++|++..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~ 93 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE 93 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 47789999999999999999999999999999999999999999999999999999999999998864
No 30
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.14 E-value=3.4e-06 Score=85.19 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=81.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211 4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
+|....+.-..+.-.+.||..-+++.+||+.|..+|+.+|+++.+|..||.+|+.-..|++|+.||++|.+++++|..++
T Consensus 299 ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 299 EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 33333333334444567888889999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhcccccc
Q 048211 84 QIESELKIILDQSNRTS 100 (665)
Q Consensus 84 ~~~~~l~~~~~~~~~~~ 100 (665)
+.+...+++.+|..+..
T Consensus 379 eGle~Akrlkkqs~kRD 395 (504)
T KOG0624|consen 379 EGLERAKRLKKQSGKRD 395 (504)
T ss_pred HHHHHHHHHHHHhccch
Confidence 88888888888765543
No 31
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.12 E-value=1.6e-05 Score=76.80 Aligned_cols=76 Identities=20% Similarity=0.150 Sum_probs=72.6
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 6 KDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 6 ~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+....+.+...+|..|++.|++..|...+++||+.||+++.+|.-+|..|..+|+.+.|.+.|++|++++|++..
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd 104 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD 104 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc
Confidence 4567789999999999999999999999999999999999999999999999999999999999999999999874
No 32
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.12 E-value=6.3e-06 Score=67.48 Aligned_cols=67 Identities=22% Similarity=0.209 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC-------PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~-------p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
+..+.+|.|.|.+|..+|+|++|+..+++|+++- |..+.+++++|.++..+|++++|++.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3578899999999999999999999999999772 223678999999999999999999999999875
No 33
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.07 E-value=1.1e-05 Score=93.10 Aligned_cols=68 Identities=26% Similarity=0.314 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+..|.|+|.+|+++|+|++|++++++||+++|+++++|+|+|.++..+|+|++|+.+|..++.+++.+
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~ 227 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR 227 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 45799999999999999999999999999999999999999999999999999999998888776654
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=5.6e-06 Score=87.36 Aligned_cols=66 Identities=23% Similarity=0.440 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
|..||++|...++-++-..|+++|..+||.|+..||.||+.+.-+++|++|+.||+++.+++|++.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999975
No 35
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.98 E-value=6.2e-05 Score=68.45 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
...++.++|.+++++|++++|+..++++++.+|.++..++.+|.++..+|++++|+..|+++++++|++.....+.+++.
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999987666666666
Q ss_pred HHHh
Q 048211 91 IILD 94 (665)
Q Consensus 91 ~~~~ 94 (665)
..++
T Consensus 130 ~~~~ 133 (135)
T TIGR02552 130 AMLE 133 (135)
T ss_pred HHHh
Confidence 5543
No 36
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=1.2e-05 Score=77.65 Aligned_cols=67 Identities=33% Similarity=0.383 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
++.+..|.|||.||+++++|+.+.+||.+|++++|+-+|+.|-.|+++.....|.+|+..+++|.++
T Consensus 41 P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 41 PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999664
No 37
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=5.2e-05 Score=76.11 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+|.-+-+-+.-+.+-++|++|+.-+++||+++|.++-.|.+||.+|.+||.|+.|++|.+.|++++|...
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH
Confidence 5556667788889999999999999999999999999999999999999999999999999999999875
No 38
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.82 E-value=3.2e-05 Score=64.31 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
....+.+.|.||+++|+|++|+..+++ ++.+|.++...+-.|+|+..+|+|++|++.|+++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 556777799999999999999999998 8888888888888899999999999999988864
No 39
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.81 E-value=0.00012 Score=67.45 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=66.5
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
++.+..+|. .|.-++..|++++|..-+.....+||.++..|+.+|.|+..+|+|++|++.|.+|..++|++..
T Consensus 32 ~~~l~~lY~-~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 32 TQPLNTLYR-YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 445555555 8889999999999999999999999999999999999999999999999999999999998754
No 40
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.80 E-value=9e-05 Score=65.13 Aligned_cols=67 Identities=31% Similarity=0.369 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRES 77 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p 77 (665)
.+.+|+|||.+|--+|+-++|++|.++|+++..+. -.+|..||..|..+|+.+.|..||+.+-++..
T Consensus 76 raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 76 RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 56667777777777777777777777777774332 24566777777777777777777777666643
No 41
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.79 E-value=0.00018 Score=70.41 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVN-VSLEN--HDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~-~~l~~--~~~A~~~~~~al~l~p~~~ 80 (665)
.+.+|.+.|.+|..+|++++|+.-+++|++++|+++.++...|.++ ...|+ +++|.+.++++++++|++.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence 3445666666666666666666666666666666666666666654 45555 3666666666666666654
No 42
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.00016 Score=63.63 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
..+.+.+..+++.|+|++|++.+..+++.+|++ +.+++.+|.++...|++++|+..|+.++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 457888899999999999999999999888775 5788889999999999999999999998888775
No 43
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00032 Score=57.54 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
++.++|.+++..|++++|+..+..+++..|..+.+++.+|.++...+++++|++.|+.++.+.|.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 5789999999999999999999999999999999999999999999999999999999999988875
No 44
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.72 E-value=2.1e-05 Score=79.98 Aligned_cols=69 Identities=36% Similarity=0.514 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
-++.+|.+|+.++++++.+.+|++||+.|+++||+-++.|--||.+...+|++++|..|+..+++++-+
T Consensus 146 ~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 146 PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 489999999999999999999999999999999999999999999999999999999999999998655
No 45
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.00031 Score=75.32 Aligned_cols=67 Identities=24% Similarity=0.294 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+...|..++..|+|++|++.+++||+++|+++.+|+.+|.++..+|+|++|+.++++++.++|++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~ 71 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK 71 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 5667899999999999999999999999999999999999999999999999999999999998764
No 46
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.67 E-value=9.1e-05 Score=49.94 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 47 KAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
++|+++|.++..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 44555555555555555555555555555554
No 47
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=97.65 E-value=2.5e-05 Score=87.00 Aligned_cols=70 Identities=29% Similarity=0.508 Sum_probs=56.5
Q ss_pred cccccccCCCcCCcEEEEeCC----EEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeeccCCCC
Q 048211 378 TAGSLFNHSCLPNIHAYFLSR----TLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSE 449 (665)
Q Consensus 378 p~~Sl~NHSC~PN~~~~f~g~----~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~ 449 (665)
....++||||.||+..+..+. .+.++|++||++||||++.|.... +....+...+...+...|.|.+|+.
T Consensus 404 ~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (480)
T COG2940 404 DVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSL--EDNRELKKLLEKRWGCACGEDRCSH 477 (480)
T ss_pred cccceeecCCCCCcceecccccccceeeecccccchhhhhhcccccccc--ccchhhhhhhhhhhccccCCCccCC
Confidence 456699999999998876543 799999999999999999999753 3333346677778899999999974
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=97.64 E-value=0.00018 Score=82.00 Aligned_cols=70 Identities=10% Similarity=-0.028 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++.++|.++..+|++++|+..+++|++++|+++.+|+.+|.++..+|++++|+..++++++++|.+.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 4567888899999999999999999999999999999999999999999999999999999999999865
No 49
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.64 E-value=8.9e-05 Score=80.42 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+.++.|.|..|-++|++++|+.-+..||.++|.++++|.++|..|..+|+..+|+.+|.+|+.++|..
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 455566666666666666666666666666666666666666666666666666666666666666553
No 50
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=3.8e-05 Score=84.41 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=33.3
Q ss_pred cccccCCCcCCcE---EEEeC-CEEEEEEeecCCCCCceeeecCC
Q 048211 380 GSLFNHSCLPNIH---AYFLS-RTLMIRTTEFVPSGYPLELSYGP 420 (665)
Q Consensus 380 ~Sl~NHSC~PN~~---~~f~g-~~~~vrA~r~I~~GeeI~isY~~ 420 (665)
+=++||||+|||. |+..| -+|=+.|.++|++|||||+-|.-
T Consensus 194 aRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 194 ARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred HHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc
Confidence 3488999999994 44444 36778999999999999999974
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.64 E-value=0.00029 Score=81.41 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..+.+|.+++.+++.+|++++|+.+++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 399 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP 399 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777664
No 52
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.61 E-value=0.0001 Score=49.69 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY 45 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~ 45 (665)
|.+|.|+|.+|+.+|+|++|+..+++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5689999999999999999999999999999974
No 53
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.61 E-value=0.00049 Score=60.55 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI 85 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 85 (665)
..+.++.++|.++++.|+|+.|+..+..+++.+|++ +.+++..|.++..+|++++|+..++.+++..|++......
T Consensus 37 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 37 YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 346788999999999999999999999999998875 6889999999999999999999999999999998754333
No 54
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0007 Score=64.59 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=66.8
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
..-.+.++.++|..+...|++++|+..+++|++.+|+. +.+++.+|.++..+|++++|+..|++++++.|++..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 34578899999999999999999999999999987653 578999999999999999999999999999998753
No 55
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.56 E-value=9.5e-05 Score=49.97 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048211 35 CNRAVQICPSYAKAWYRRGKVNVSLENHDDAVH 67 (665)
Q Consensus 35 ~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~ 67 (665)
+++||+++|+++.+|+++|.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 679999999999999999999999999999863
No 56
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=97.54 E-value=5.7e-05 Score=88.46 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=35.0
Q ss_pred ccccccCCCcCCcEE---EEeC-CEEEEEEeecCCCCCceeeecC
Q 048211 379 AGSLFNHSCLPNIHA---YFLS-RTLMIRTTEFVPSGYPLELSYG 419 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~---~f~g-~~~~vrA~r~I~~GeeI~isY~ 419 (665)
.+.+|||||.|||.. +.+| .+|+|.|.|+|.+|||||..|-
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 578999999999933 3345 4799999999999999999995
No 57
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.51 E-value=0.00073 Score=68.92 Aligned_cols=76 Identities=18% Similarity=0.136 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 11 VATLYVNRASVL-QKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 11 ~a~~~~NRa~~~-~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
.....++.|..+ ++.|+|++|+..+...++..|+. +.++|.+|.+++..|+|++|+..|+++++..|++....+..
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 445567777776 56788899988898888888876 57888889999999999999988888888888765444433
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.48 E-value=0.0012 Score=64.77 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=69.8
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+....+.++.+++.+|+..|++++|++.++++++.+|+++.++..+|.++..+|++++|++.|++++++.|.+..
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 100 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD 100 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 344578899999999999999999999999999999999999999999999999999999999999999988753
No 59
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.47 E-value=0.00058 Score=81.93 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+.+|.|+|.++.++|++++|+..+.++++++|+++.++..+|.++..+|++++|++.|+++++++|++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 345666666666666666666666666666666666666666666666666666666666666666654
No 60
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.44 E-value=0.00052 Score=56.27 Aligned_cols=66 Identities=26% Similarity=0.354 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
.++.++|.++...+++++|+..++.+++..|..+.+++.+|.++..+|++++|...+..+++..|+
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 678999999999999999999999999999999999999999999999999999999999888763
No 61
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.42 E-value=0.00098 Score=65.19 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211 11 VATLYVNRASVL-QKRDH--LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES 87 (665)
Q Consensus 11 ~a~~~~NRa~~~-~~l~~--~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 87 (665)
.+.++.+.|.++ +..|+ +++|.+-++++++.+|+++.+++.+|.++..+|+|++|+..++++++++|.+..+..+.+
T Consensus 106 ~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 106 NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 455677777764 56666 478888888888888888888888888888888888888888888887776655444444
Q ss_pred HH
Q 048211 88 EL 89 (665)
Q Consensus 88 ~l 89 (665)
.+
T Consensus 186 ~i 187 (198)
T PRK10370 186 SI 187 (198)
T ss_pred HH
Confidence 33
No 62
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.41 E-value=0.0008 Score=64.19 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcC
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN--------------HDDAVHDLTIAKNRE 76 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~--------------~~~A~~~~~~al~l~ 76 (665)
.+.++.|+|.++.++|+|++|+..+.+|++.+|+++.++..+|.++..+|+ +++|.+.+++++.++
T Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 467899999999999999999999999999999999999999999999888 566666777777777
Q ss_pred CCh
Q 048211 77 SSL 79 (665)
Q Consensus 77 p~~ 79 (665)
|++
T Consensus 151 p~~ 153 (172)
T PRK02603 151 PNN 153 (172)
T ss_pred chh
Confidence 776
No 63
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.40 E-value=0.00051 Score=74.76 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.+.+|.+.+|..+|.+++|..-+.+||+..|..+.+..++|..|...|++++|+..|+.|+++.|...
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 5778899999999999999999999999999999999999999999999999999999999999999753
No 64
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.39 E-value=0.00034 Score=46.93 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 46 AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 46 ~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+++|+.+|.+++.+|+|++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3566666666666666666666666666666653
No 65
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.37 E-value=0.0018 Score=61.54 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=66.2
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
...+.+|.+.+.++..+|+|++|+..+.+|+.+.|+ .+.+|+++|.++..+|++++|++.|+++++++|....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 447889999999999999999999999999999766 3568999999999999999999999999999988653
No 66
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.33 E-value=0.0013 Score=62.47 Aligned_cols=71 Identities=10% Similarity=-0.065 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHH-------HHHHHhc
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNV-------SLENHDDAVHD-------LTIAKNR 75 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~-------~l~~~~~A~~~-------~~~al~l 75 (665)
..+.++.|.|.+|.++|++++|+..+.+|++++|.++.++..+|.++. .+|++++|+.. |++++..
T Consensus 70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999999888888888 78887755544 4456667
Q ss_pred CCChH
Q 048211 76 ESSLA 80 (665)
Q Consensus 76 ~p~~~ 80 (665)
+|++.
T Consensus 150 ~p~~~ 154 (168)
T CHL00033 150 APGNY 154 (168)
T ss_pred CcccH
Confidence 77654
No 67
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.32 E-value=0.0011 Score=66.37 Aligned_cols=75 Identities=8% Similarity=-0.044 Sum_probs=68.9
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA---KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~---ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+..+..+.+++..+++.|+|++|+..++++++.+|+.+ ++++.+|.++..+|++++|+..|+++++..|++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 356788999999999999999999999999999999865 789999999999999999999999999999987643
No 68
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.00025 Score=76.82 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
...+|+..++.+..-.+.++|+..|.+||++.|+|..++|++|.+++.+|.|++|+..|-.|+.+.+.
T Consensus 463 d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 463 DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 45566666777777777777777777777777777777777777777777777777777777776554
No 69
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.0004 Score=74.17 Aligned_cols=74 Identities=26% Similarity=0.243 Sum_probs=66.5
Q ss_pred chHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 9 NLVATLYVNRASVLQKR---DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l---~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
+....+|.|||+++++. |+.-.|++||..|+++||.+.||++|++.|+..++++.+|+++...+....|.+.++
T Consensus 405 ~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 405 PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 45778999999999996 578899999999999999999999999999999999999999988887788876543
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.29 E-value=0.00089 Score=77.33 Aligned_cols=71 Identities=6% Similarity=-0.035 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
....++.|++.++.+++++++|+..+++++..+|+++.+++.+|.++..+|+|++|++.|++++.-+|++.
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~ 188 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFE 188 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH
Confidence 35677888888888888888888888888888888888888888888888888888888888888777653
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0011 Score=71.70 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES 87 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 87 (665)
-.+.|.|-+|.+++.|++||..+++||.+.|.++..+.-.|-++..+|+++.|++.|.++|-++|+|..+.++++
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999999999986666654
No 72
>PRK10941 hypothetical protein; Provisional
Probab=97.29 E-value=0.0028 Score=64.63 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=78.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES 87 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 87 (665)
..++.....|.=.+|.+.++|+.|++..++.+.++|+.+.-+--||.+|.+||.+..|..|++..++..|++....-++.
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 46789999999999999999999999999999999999988888999999999999999999999999999887766666
Q ss_pred HHHHHH
Q 048211 88 ELKIIL 93 (665)
Q Consensus 88 ~l~~~~ 93 (665)
.++.+.
T Consensus 257 ql~~l~ 262 (269)
T PRK10941 257 QIHSIE 262 (269)
T ss_pred HHHHHh
Confidence 666654
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.21 E-value=0.0035 Score=61.44 Aligned_cols=66 Identities=15% Similarity=0.049 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
..+.+++.++..+|++++|+..+.++++.+|+++.+++.+|.++..+|++++|+..+++++++.|.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 345555555555666666666666666555555555555566666666666666555555555444
No 74
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.18 E-value=0.00089 Score=48.12 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGK 54 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~ 54 (665)
.++..+|.+|.++|++++|++-++++++.+|+++.+|..+|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778888888888888888888888888888888887765
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.18 E-value=0.0023 Score=64.11 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCC
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAK---AWYRRGKVNVSL--------ENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~k---a~~r~a~~~~~l--------~~~~~A~~~~~~al~l~p~ 78 (665)
....++.++|.+|+++|++++|+..++++++..|+++. +++.+|.++..+ |++++|++.|+++++.+|+
T Consensus 68 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 68 YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 44567899999999999999999999999999998765 799999999987 8899999999999999999
Q ss_pred hHHHHHHH
Q 048211 79 LAGKKQIE 86 (665)
Q Consensus 79 ~~~~~~~~ 86 (665)
+.......
T Consensus 148 ~~~~~~a~ 155 (235)
T TIGR03302 148 SEYAPDAK 155 (235)
T ss_pred ChhHHHHH
Confidence 86544433
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=97.16 E-value=0.0017 Score=73.92 Aligned_cols=72 Identities=11% Similarity=-0.019 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKR---------DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l---------~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.+|.+.|.+|..+ +++++|+..+++|++++|+++.+|..+|.++...|++++|+..|+++++++|++..
T Consensus 294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~ 373 (553)
T PRK12370 294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD 373 (553)
T ss_pred cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 466788888877644 34899999999999999999999999999999999999999999999999999874
Q ss_pred H
Q 048211 82 K 82 (665)
Q Consensus 82 ~ 82 (665)
.
T Consensus 374 a 374 (553)
T PRK12370 374 I 374 (553)
T ss_pred H
Confidence 3
No 77
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.13 E-value=0.0011 Score=44.29 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY 45 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~ 45 (665)
|.++.++|.+|+++|+|++|++.+++|++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999985
No 78
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.12 E-value=0.0021 Score=60.29 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHH
Q 048211 10 LVATLYVNRASVLQKRD----------HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-----------HDDAVHD 68 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~----------~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-----------~~~A~~~ 68 (665)
..+..+.|=+.+++.+. -+++|+.-++.||.+||++.+|++..|.++..++. |+.|.+.
T Consensus 23 ~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~ 102 (186)
T PF06552_consen 23 LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEY 102 (186)
T ss_dssp T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 34667778888877763 46889999999999999999999999999988876 6788889
Q ss_pred HHHHHhcCCChHHHHHH
Q 048211 69 LTIAKNRESSLAGKKQI 85 (665)
Q Consensus 69 ~~~al~l~p~~~~~~~~ 85 (665)
|++|...+|+|+.....
T Consensus 103 FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 103 FQKAVDEDPNNELYRKS 119 (186)
T ss_dssp HHHHHHH-TT-HHHHHH
T ss_pred HHHHHhcCCCcHHHHHH
Confidence 99999999999854433
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.12 E-value=0.0051 Score=68.02 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcch
Q 048211 571 VLLDASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETM 649 (665)
Q Consensus 571 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~ 649 (665)
.+..+.+.++++..+.+-| ...+.+.+..||+.||.+|..+..||.++...|+..+| .++.+|+.|....+|..||.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly-~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLY-EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHhccHHHHHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 4566777888888888755 45588999999999999999999999999999999999 999999999999999999999
Q ss_pred hhhHHHHHH
Q 048211 650 FPHLLFLQR 658 (665)
Q Consensus 650 ~~~~~~l~~ 658 (665)
...+.++--
T Consensus 325 ~~~l~~~~~ 333 (508)
T KOG1840|consen 325 AAQLSELAA 333 (508)
T ss_pred HHHHHHHHH
Confidence 877766543
No 80
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.10 E-value=0.0031 Score=75.77 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ 84 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 84 (665)
.+.++.|.|.++..+|++++|+..+++|++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+..
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 44678888888888888888888888888888888888888888888888888888888888888888765433
No 81
>PLN02789 farnesyltranstransferase
Probab=97.07 E-value=0.0018 Score=68.06 Aligned_cols=72 Identities=15% Similarity=0.067 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCChHH
Q 048211 10 LVATLYVNRASVLQKRD-HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENH--DDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~-~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~--~~A~~~~~~al~l~p~~~~ 81 (665)
....++.+|+.++..++ .++++++.++++++.+|++..+|+.|+.++.++|+. +++++.++++++++|.|..
T Consensus 69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~ 143 (320)
T PLN02789 69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH 143 (320)
T ss_pred hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence 35678999999999998 589999999999999999999999999999888874 6778888899999998854
No 82
>PRK15331 chaperone protein SicA; Provisional
Probab=97.07 E-value=0.0026 Score=59.05 Aligned_cols=79 Identities=9% Similarity=0.107 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
....+...|+|+..+++|+.|+.-+..|..+++++|...++.|+|+..+|+.+.|...|+.++. .|... .++++.+
T Consensus 70 n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~---~l~~~A~ 145 (165)
T PRK15331 70 NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE---SLRAKAL 145 (165)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH---HHHHHHH
Confidence 3556788899999999999999999999999888888899999999999999999999988887 34443 3444444
Q ss_pred HHH
Q 048211 91 IIL 93 (665)
Q Consensus 91 ~~~ 93 (665)
..+
T Consensus 146 ~~L 148 (165)
T PRK15331 146 VYL 148 (165)
T ss_pred HHH
Confidence 433
No 83
>PLN02789 farnesyltranstransferase
Probab=97.05 E-value=0.0023 Score=67.27 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHL--VECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~--~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
...++.+|+.++.++++. ++++.-++++|+.||.+..||..||-++..+|+|++|++.+.++++.+|.|..
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 456799999999999974 78899999999999999999999999999999999999999999999999864
No 84
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.94 E-value=0.0049 Score=71.30 Aligned_cols=72 Identities=15% Similarity=0.018 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.++.|.|.+..++|++++|....+.+++++|++..|+..+|.++.+++++++|+..+++++..+|++...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999999998654
No 85
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00057 Score=70.12 Aligned_cols=87 Identities=26% Similarity=0.183 Sum_probs=76.4
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
-..+....+.|.|++-++++.|..|+..+..++..++...+++||++++++.+.++++|++++..+....|++..+.+..
T Consensus 270 ~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 270 LRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred ccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999998665554
Q ss_pred HHHHHHH
Q 048211 87 SELKIIL 93 (665)
Q Consensus 87 ~~l~~~~ 93 (665)
....+..
T Consensus 350 ~~~~~~~ 356 (372)
T KOG0546|consen 350 ENVRQKK 356 (372)
T ss_pred HHhhhHH
Confidence 4444443
No 86
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.90 E-value=0.0026 Score=61.05 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=71.4
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 6 KDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 6 ~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..++..|.+++.|+.-|-.+|-+..|--|+..+|.++|+-|.++.-+|.-+..-|+|+.|.+.|...++++|+..
T Consensus 59 l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 59 LTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred CChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 356779999999999999999999999999999999999999999999999999999999999999999999976
No 87
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.87 E-value=0.0071 Score=54.97 Aligned_cols=73 Identities=7% Similarity=-0.008 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+.-+..+.+.|...++.|+|++|++-++....-=|. -..|.+.+|-+++..++|++|+..+++.++++|+++.
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 345566778888888888888888888877766554 2577888888888888888888888888888887643
No 88
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.83 E-value=0.014 Score=51.64 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+..+--.+.++..-|+.+.|++-+.+||.+-|..+.+|.+||+++...|+.++|++|+++++++..+.
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 344455567788889999999999999999999999999999999999999999999999999995543
No 89
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.83 E-value=0.0063 Score=72.17 Aligned_cols=70 Identities=11% Similarity=-0.080 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
...++.+++.++...|++++|++.+++++...|+++.+++.+|.++...|++++|++.++++++++|++.
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 4567778888888889999999989988888888888888889988889999999999998888888874
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.0057 Score=60.57 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=59.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 18 RASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
-+-..++.|+|..|+.-+.+|..++|+++++|.-+|-+|.++|++++|...|.+++++.|++.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence 667788999999999999999999999999999999999999999999999999999988865
No 91
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.75 E-value=0.0016 Score=66.35 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
.-.++.-||++|.|++||+-|.+++.++|.++-.+.+||.+|.++..|..|..|-+.|+.++-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 3578899999999999999999999999999999999999999999999999999998888654
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.74 E-value=0.0073 Score=67.44 Aligned_cols=71 Identities=8% Similarity=0.085 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.-++.-+|+.|-.+|++++|++.+++||+++|..++.|..+|+++...|++.+|.+.++.|-++|+.+-
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 34556788999999999999999999999999999999999999999999999999999999999998865
No 93
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.73 E-value=0.0091 Score=69.44 Aligned_cols=65 Identities=12% Similarity=-0.056 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCChH
Q 048211 16 VNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDD----AVHDLTIAKNRESSLA 80 (665)
Q Consensus 16 ~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~----A~~~~~~al~l~p~~~ 80 (665)
.+.+.++.++|++++|+..+.++++.+|+++.+++.+|.++..+|++++ |+..|+++++++|++.
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~ 284 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV 284 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH
Confidence 4456667777777777777777777777777777777777777777764 6777777777777654
No 94
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.73 E-value=0.0099 Score=52.89 Aligned_cols=67 Identities=16% Similarity=-0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+.+++|.++-.+|+.++|+.-+.+|++...+ -..+++.+|..+..+|++++|+..+++++.-.|++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 46889999999999999999999999998533 36899999999999999999999999999887873
No 95
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.73 E-value=0.0061 Score=70.89 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVE----CLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~----al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.++.+.|.+|..+|++++ |+..+++|++++|+++.++..+|.++...|++++|+..++++++++|++...
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a 320 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV 320 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 46778899999999999986 8999999999999999999999999999999999999999999999998643
No 96
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.67 E-value=0.017 Score=59.03 Aligned_cols=83 Identities=12% Similarity=0.066 Sum_probs=73.7
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ 84 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 84 (665)
....+.+++-.|.+|+..|+|++|+..+.++++..|+ .+.+++++|.++..+|++++|+..|+++++..|+......
T Consensus 176 s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 176 STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 3456778899999999999999999999999998877 5789999999999999999999999999999999887766
Q ss_pred HHHHHH
Q 048211 85 IESELK 90 (665)
Q Consensus 85 ~~~~l~ 90 (665)
.++.+.
T Consensus 256 A~~rL~ 261 (263)
T PRK10803 256 AQKRLN 261 (263)
T ss_pred HHHHHh
Confidence 666553
No 97
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.66 E-value=0.012 Score=50.99 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQI-------CPS----YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~-------~p~----~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.--+.+|+-.|.++..+|+|++++...++||.. +.+ +..+.++||.++..+|+.++|+..|+.+-++
T Consensus 52 GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 52 GFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 347899999999999999999999999999954 444 3456688999999999999999999988664
No 98
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.60 E-value=0.0034 Score=42.02 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 47 KAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
++|+.+|.++..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46667777777777777777777777776664
No 99
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.58 E-value=0.0087 Score=67.13 Aligned_cols=69 Identities=17% Similarity=0.065 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+.+|.=.|..+...|++++|...+++|++++|+ ..+|..+|+++...|++++|++.|++|+.++|...+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 466777788888899999999999999999995 789999999999999999999999999999999764
No 100
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.57 E-value=0.012 Score=44.10 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 048211 48 AWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIIL 93 (665)
Q Consensus 48 a~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 93 (665)
-+|-+|.+++++|+|+.|....+.+++++|+|.....+++.++..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 4577788888888888888888888888888887767766665544
No 101
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.51 E-value=0.011 Score=64.08 Aligned_cols=68 Identities=9% Similarity=0.033 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA-----KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-----ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
..++.+++.++.+.|+|++|++.+.++++.+|.+. ..+..+|..+...|++++|+..|+++++.+|++
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 34555566666666666666666666665554432 234455555566666666666666666555554
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.0055 Score=66.69 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
-+.++.-.+..|+-.++|+.|++-++.||..+|++...|.|+|..+..-.+.++|+..|++|+++.|+-
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 344566677788888999999999999999999999999999999999999999999999999999984
No 103
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=96.48 E-value=0.0017 Score=69.59 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=35.7
Q ss_pred cccccCCCcCCcEEEE--eC------CEEEEEEeecCCCCCceeeecCCCC
Q 048211 380 GSLFNHSCLPNIHAYF--LS------RTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 380 ~Sl~NHSC~PN~~~~f--~g------~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
+=++||||.||+.+.. .+ -++.+.|+++|++|+|||..|+..+
T Consensus 273 ~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~ 323 (364)
T KOG1082|consen 273 ARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAY 323 (364)
T ss_pred cccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccc
Confidence 3488999999997764 33 2688999999999999999999753
No 104
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.46 E-value=0.016 Score=64.25 Aligned_cols=83 Identities=24% Similarity=0.198 Sum_probs=72.7
Q ss_pred HHhHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHH
Q 048211 579 LGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQ 657 (665)
Q Consensus 579 l~~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~ 657 (665)
.+++.++. +.++.-++.+++.+|..||.++-.+..+|.+++..++..+| ..+.+|.+|+.-.+|.+||.|.-.+-+|-
T Consensus 212 ~g~~e~A~-~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 212 QGRLEKAE-PLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred hccHHHHH-HHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444454 46677777889999999999999999999999999999999 99999999999999999999999999988
Q ss_pred HHHhc
Q 048211 658 REALK 662 (665)
Q Consensus 658 ~~~~~ 662 (665)
.++.+
T Consensus 291 ~ly~~ 295 (508)
T KOG1840|consen 291 VLYYK 295 (508)
T ss_pred HHHhc
Confidence 77643
No 105
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.44 E-value=0.0067 Score=50.22 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 25 RDHLVECLRDCNRAVQICPS--YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 25 l~~~~~al~d~~~al~~~p~--~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.|+|+.|+.-++++++.+|. +...++.+|.|++.+|+|++|++.+++ .+.++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~ 58 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP 58 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH
Confidence 68999999999999999995 467788999999999999999999998 77777664
No 106
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.37 E-value=0.0076 Score=43.21 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 46 AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 46 ~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
|.+|+.+|.++..+|++++|++.|+++++.+|++...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a 37 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEA 37 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 4688999999999999999999999999999999754
No 107
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.35 E-value=0.016 Score=66.18 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
....-+|.+.+.+|...|+|.+|+.-+.......+. +.-.|+++|.||+.+|.|+.|++.|++++.++|++..+
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~ 485 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA 485 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence 446778999999999999999999999998887654 57899999999999999999999999999999998743
No 108
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.33 E-value=0.012 Score=57.41 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
...+|.-||..|.++|+.+.|-+.+.+|++++|++.+.+.+-|--+...|+|++|...|++|+.
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 5678889999999999999999999999999999999999999999999999999999998875
No 109
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.012 Score=61.69 Aligned_cols=69 Identities=25% Similarity=0.222 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
....+-+|+.-.++.|+|..|.+-+..||.+||++ ++.|.+||.+..++|+.++|+.|-+.+++++++-
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 34567789999999999999999999999999985 7899999999999999999999999999998874
No 110
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.024 Score=60.30 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES 87 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 87 (665)
.+|.-.+--|..+++-.+|++.+++|+++||.+.+|||-+|++|.-|+-..-|+=.|++|+++.|++......+.
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG 439 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG 439 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 344444455677888888888888888888888888888888888888888888888888888888874444333
No 111
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.26 E-value=0.016 Score=47.01 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=52.0
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHH
Q 048211 574 DASRFLGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFL 639 (665)
Q Consensus 574 ~~~~~l~~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~ 639 (665)
.+...+++|.+++. +-...++. .+.+|+.||.++..+..||.++...|+.++| .++.+|.+|.+
T Consensus 13 ~~~~~~~~~~~A~~-~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 13 RVYRELGRYDEALD-YYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHTT-HHHHHH-HHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHH-HHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 34445677777776 44444556 7888999999999999999999999999999 99999999974
No 112
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.24 E-value=0.018 Score=71.68 Aligned_cols=70 Identities=9% Similarity=0.025 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
...+.+++.++...|++++|++.++++++++|+++.+++++|.++..+|++++|+..|+++++.+|++..
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 3456778899999999999999999999999999999999999999999999999999999999998764
No 113
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.23 E-value=0.049 Score=55.02 Aligned_cols=73 Identities=4% Similarity=-0.169 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA---KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~---ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.-+..+...|..+++.|+|++|++.++.++...|+.+ ++.+..|.+++++++|++|+..+++.++..|+++.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 3455567788888888888888888888888888764 455888888888888888888888888888887544
No 114
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.21 E-value=0.035 Score=56.14 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211 44 SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ 84 (665)
Q Consensus 44 ~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 84 (665)
..+..+|..|.-++..|+|++|++.|+.++...|.......
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~ 70 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQ 70 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 46788889999999999999999999999999888764433
No 115
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.21 E-value=0.025 Score=67.63 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+..+..+|..++..|+|++|+..+.++++.+|+++.+++.+|.++..+|+|++|+..|+++++..|.+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 90 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN 90 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh
Confidence 4567889999999999999999999999999999999999999999999999999999999999988754
No 116
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.16 E-value=0.035 Score=65.96 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
...++.++|.++...|++++|++.+++|++++|+++.+++.+|..+..+|+|++|...++.+++..|++.....+.+..+
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~ 471 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARD 471 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999997766655544
No 117
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.16 E-value=0.0083 Score=42.02 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCc
Q 048211 609 GYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAE 647 (665)
Q Consensus 609 g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~ 647 (665)
+.-+..||.++...|+.++| ..+.+|..|-+-.+|++||
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccccc
Confidence 45678899999999999999 9999999999999999998
No 118
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.15 E-value=0.0098 Score=39.73 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY 45 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~ 45 (665)
+.+|.++|.+|.++|++++|+..++++++++|+|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4578999999999999999999999999999864
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.14 E-value=0.017 Score=53.27 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=57.9
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048211 6 KDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTI 71 (665)
Q Consensus 6 ~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~ 71 (665)
++......+....|..++..|+|++|+..++.+++..|+. +.+.+|+|.+++..|+|++|+..++.
T Consensus 42 ~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 42 PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3445677888899999999999999999999999987654 56899999999999999999999976
No 120
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.13 E-value=0.041 Score=54.00 Aligned_cols=73 Identities=8% Similarity=0.021 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
-+..+.+.|..+++.|+|.+|+..++.++..-|+. +++.+.+|.+++..|+|.+|+..++..++..|+...+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 45678889999999999999999999999987763 69999999999999999999999999999999976543
No 121
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=0.008 Score=66.46 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
-+-+|.-.+-=+...++|+.|...+..||..||.+..|||-.|.+|.+.++++.|.-.|++|++++|.|..
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv 524 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV 524 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh
Confidence 34556666666777888899999999999999888899999999999999999999899999999988863
No 122
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.08 E-value=0.025 Score=60.34 Aligned_cols=70 Identities=13% Similarity=-0.038 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
.....++.+.|.++..+|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++...|.
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 3456677889999999999999999999999999999999999999999999999999999999998775
No 123
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.07 E-value=0.03 Score=69.67 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
...+++.++++.|++++|+..++++++++|+++.+++.+|.++...|++++|++.|+++++++|++..
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999764
No 124
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.034 Score=55.93 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=76.1
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
..++.+....|.=++|.+.++|+.|+...++.+.++|..+..+--||.+|.++|.+..|++|++...+.-|+......++
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999987665555
Q ss_pred HHHHHH
Q 048211 87 SELKII 92 (665)
Q Consensus 87 ~~l~~~ 92 (665)
.++..+
T Consensus 256 ~~l~~l 261 (269)
T COG2912 256 AQLLEL 261 (269)
T ss_pred HHHHHH
Confidence 554443
No 125
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.05 E-value=0.0088 Score=57.51 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
..+.+|+-.+.-+..-|+|++|++.++.++++||.|--|..+||.+++--|+|+-|.+|+.+...-+|++.-+
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 3677788888888899999999999999999999999999999999999999999999999999999998643
No 126
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=96.04 E-value=0.003 Score=70.46 Aligned_cols=44 Identities=32% Similarity=0.577 Sum_probs=34.5
Q ss_pred ccccccCCCcCCcEEE--EeCC------EEEEEEeecCCCCCceeeecCCCC
Q 048211 379 AGSLFNHSCLPNIHAY--FLSR------TLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~--f~g~------~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
.+-++||||+||.++. |... -+.+.|.+-|++|+|||--|....
T Consensus 1189 lGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~ 1240 (1262)
T KOG1141|consen 1189 LGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQ 1240 (1262)
T ss_pred hhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccc
Confidence 3458999999999763 4432 367788899999999999998653
No 127
>PRK15331 chaperone protein SicA; Provisional
Probab=95.99 E-value=0.045 Score=51.00 Aligned_cols=73 Identities=11% Similarity=-0.074 Sum_probs=63.9
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+++.+-.+|. .|.-++..|+|++|..-+.-..-+||.+++-|.-+|.|+..+++|+.|++.|..|..+++++.
T Consensus 33 s~~~le~iY~-~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 33 PQDMMDGLYA-HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred CHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 3444555555 788899999999999999999999999999999999999999999999999999998877653
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.97 E-value=0.015 Score=64.94 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=56.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 23 QKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 23 ~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
+..++|++|.++.+.++++||.+...||++|-|..++++++.|+++|..+..++|++...
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence 345899999999999999999999999999999999999999999999999999998654
No 129
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.95 E-value=0.045 Score=65.39 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=60.6
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
....+.++..++.+++++|++++|+..++++++.+|+++.+++.+|.++...|++++|++.++++++.+|.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 194 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD 194 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 34456778888888888888888888888888888888888888888888888888888888888888877643
No 130
>PRK11906 transcriptional regulator; Provisional
Probab=95.86 E-value=0.033 Score=60.02 Aligned_cols=68 Identities=12% Similarity=0.006 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+.++.-.|.++...++++.|+..+++|+.++|+++.+|+..|......|+.++|.+.++++++++|.-
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 44445555555555556666666666666666666666666666666666666666666666666654
No 131
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.86 E-value=0.027 Score=63.34 Aligned_cols=79 Identities=16% Similarity=0.058 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCChHHHHHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVH--DLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~--~~~~al~l~p~~~~~~~~~ 86 (665)
.+.+..|+-|+..+...|.+++|.+-+..|+.+||+.+....-.|.++...|+-.-|.. .+..+++++|.|.....-.
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45677889999999999999999999999999999998888888888888888877776 8888888888887554433
Q ss_pred H
Q 048211 87 S 87 (665)
Q Consensus 87 ~ 87 (665)
.
T Consensus 761 G 761 (799)
T KOG4162|consen 761 G 761 (799)
T ss_pred H
Confidence 3
No 132
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.81 E-value=0.039 Score=59.64 Aligned_cols=70 Identities=10% Similarity=-0.004 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
...++.+++.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+..|+++++.+|.+.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~ 141 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE 141 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH
Confidence 35678889999999999999999999988864322 35688889999999999999999999998877654
No 133
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.79 E-value=0.015 Score=45.94 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 048211 11 VATLYVNRASVLQKRD-HLVECLRDCNRAVQICP 43 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~-~~~~al~d~~~al~~~p 43 (665)
.+.+|.|||.+|.++| ++++|+.++++|+++||
T Consensus 36 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 36 NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 6779999999999999 79999999999999998
No 134
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=95.78 E-value=0.006 Score=70.13 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=34.0
Q ss_pred cccccCCCcCCcEE---EEeC-CEEEEEEeecCCCCCceeeecCC
Q 048211 380 GSLFNHSCLPNIHA---YFLS-RTLMIRTTEFVPSGYPLELSYGP 420 (665)
Q Consensus 380 ~Sl~NHSC~PN~~~---~f~g-~~~~vrA~r~I~~GeeI~isY~~ 420 (665)
+=++||||.||+.. ..+| .++.|.|.|||++||||+.-|-.
T Consensus 1251 ~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ 1295 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNF 1295 (1306)
T ss_pred ccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccc
Confidence 44789999999944 4455 47999999999999999999854
No 135
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.76 E-value=0.025 Score=58.42 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=27.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 20 SVLQKRDHLVECLRDCNRAVQIC--PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 20 ~~~~~l~~~~~al~d~~~al~~~--p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..+.+.++++++.+-++.+.+.. +.++..|..+|.++.+.|++++|++.|+++++++|++.
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 34445555555555555544433 33445555555555555555555555555555555543
No 136
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.74 E-value=0.026 Score=63.97 Aligned_cols=90 Identities=31% Similarity=0.383 Sum_probs=77.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 4 NDKDRNLVATLYVNRASVLQKR--DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l--~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
-|.+..+.+.++.|++.+|..+ ++|..++.+++.|+..+|.+.+++++|+.+|..++.++-|++++.....++|++..
T Consensus 83 lp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 83 LPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred ccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 4567788999999999999886 58999999999999999999999999999999999999999999999999999854
Q ss_pred HHHHHHHHHHHH
Q 048211 82 KKQIESELKIIL 93 (665)
Q Consensus 82 ~~~~~~~l~~~~ 93 (665)
...+-.+++.++
T Consensus 163 ~~eif~elk~ll 174 (748)
T KOG4151|consen 163 ASEIFEELKGLL 174 (748)
T ss_pred HHHHHHHHHHHH
Confidence 444444555444
No 137
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.69 E-value=0.061 Score=59.72 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.-.+|+-.+.+|+++++++.|.-.+.+|+++||.+.-...-.|..+.++|+.+.|+..|++|+.++|.+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 4567888999999999999999999999999999999999999999999999999999999999999874
No 138
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.63 E-value=0.095 Score=47.72 Aligned_cols=82 Identities=12% Similarity=0.192 Sum_probs=60.5
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA---KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ 84 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~---ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 84 (665)
.+....+..+.+-+|++.++|++|+..+++=++++|.++ -|+|++|.+++.+.. .++ ......+-+.....+
T Consensus 43 g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~--~~~---~~~~~~drD~~~~~~ 117 (142)
T PF13512_consen 43 GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE--GSL---QSFFRSDRDPTPARQ 117 (142)
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh--hHH---hhhcccccCcHHHHH
Confidence 345667888999999999999999999999999999875 679999999887765 233 333333333334456
Q ss_pred HHHHHHHHHh
Q 048211 85 IESELKIILD 94 (665)
Q Consensus 85 ~~~~l~~~~~ 94 (665)
....++.++.
T Consensus 118 A~~~f~~lv~ 127 (142)
T PF13512_consen 118 AFRDFEQLVR 127 (142)
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 139
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.59 E-value=0.097 Score=51.32 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=66.4
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHH
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLEN-----------HDDAVHDLTIA 72 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~-----------~~~A~~~~~~a 72 (665)
..+....+....|.++++.|+|+.|+..+++-++.-|+. +.++|.+|.+++.+.. ..+|+..|+..
T Consensus 37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l 116 (203)
T PF13525_consen 37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL 116 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence 345677888999999999999999999999999998876 5789999999877642 35889999999
Q ss_pred HhcCCChHHHHHHHHHHHHH
Q 048211 73 KNRESSLAGKKQIESELKII 92 (665)
Q Consensus 73 l~l~p~~~~~~~~~~~l~~~ 92 (665)
++.-|++.-..+....+..+
T Consensus 117 i~~yP~S~y~~~A~~~l~~l 136 (203)
T PF13525_consen 117 IKRYPNSEYAEEAKKRLAEL 136 (203)
T ss_dssp HHH-TTSTTHHHHHHHHHHH
T ss_pred HHHCcCchHHHHHHHHHHHH
Confidence 99999987655555444433
No 140
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.57 E-value=0.088 Score=48.45 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAK 73 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al 73 (665)
...+....+..+...|++++|+..+.+++..+|.+-.+|..+-.++..+|++.+|++.|++..
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445666677888899999999999999999999999999999999999999999999988764
No 141
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=95.56 E-value=0.0088 Score=59.17 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=36.0
Q ss_pred ccccccCCCcCCcEEE---EeC-CEEEEEEeecCCCCCceeeecCCC
Q 048211 379 AGSLFNHSCLPNIHAY---FLS-RTLMIRTTEFVPSGYPLELSYGPQ 421 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~---f~g-~~~~vrA~r~I~~GeeI~isY~~~ 421 (665)
..-|||||=.+|+... .+| .++++.|.+||.+||||+..|+|-
T Consensus 333 lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 333 LGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred chhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 3568999999999443 345 479999999999999999999974
No 142
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.087 Score=56.24 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
--.+|+-.+++|--++.+.-|+-.+.+|+++.|+++..|.-+|+||.++++.++|+..|..|+...-.++
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 4568899999999999999999999999999999999999999999999999999999999999866544
No 143
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.043 Score=63.30 Aligned_cols=80 Identities=4% Similarity=0.034 Sum_probs=71.6
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
..+.+..|++.|-+|..+|+|+.|...|-.|++.+|++ .=.+++.|+.+...|+++.|+..|+++++..|++...-.++
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 45678889999999999999999999999999999887 77899999999999999999999999999999987544444
Q ss_pred H
Q 048211 87 S 87 (665)
Q Consensus 87 ~ 87 (665)
.
T Consensus 383 G 383 (1018)
T KOG2002|consen 383 G 383 (1018)
T ss_pred H
Confidence 3
No 144
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.52 E-value=0.032 Score=63.81 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAK 73 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al 73 (665)
+.+|.+.|.||..+|.|+.|++-+.+||.++|++.++..+++..+..+|+.++|++.+....
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 77899999999999999999999999999999999999999999999999999999988755
No 145
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.50 E-value=0.067 Score=51.00 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=56.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 18 RASVLQKRDHLVECLRDCNRAVQICPSY-----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 18 Ra~~~~~l~~~~~al~d~~~al~~~p~~-----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
-+.-+|+-|+|++|...|..||++-|.- .-.|.+||.|+++|+.++.|+++-.+|++++|+..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~ 168 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE 168 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH
Confidence 4567899999999999999999998764 34688999999999999999999999999999865
No 146
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.46 E-value=0.14 Score=45.56 Aligned_cols=68 Identities=18% Similarity=0.026 Sum_probs=59.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
+.+....++.++|.+|..+|++++|+.-++.++...|+ +..+..-.+.++..+|++++|+..+-.++.
T Consensus 33 ~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 33 SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999998777 777777789999999999999998877664
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.42 E-value=0.1 Score=48.10 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..|...-..+ ..+++..+...++..++-.|+. ..+.+.+|.+++..|+|++|++.|+.++...|+..
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~ 82 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE 82 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH
Confidence 3444333333 5788888877788888887776 46778888999999999999999999888766654
No 148
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.40 E-value=0.022 Score=36.32 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 47 KAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
.+|+++|.++..++++++|+..|+.+++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35566666666666666666666666666553
No 149
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.37 E-value=0.079 Score=39.62 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWY 50 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~ 50 (665)
++...|.+++++|+|+.|.+.++.+|+++|+|..|..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4667899999999999999999999999999987643
No 150
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.058 Score=55.27 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=65.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC---PS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~---p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+...|.-|---+.=|++-++|..|+.-+...|+.+ |+ ++-.|.+||.|...+|+|..|+.|-.+|+.++|.+.
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 34578888888999999999999999999999986 33 567899999999999999999999999999999974
No 151
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.32 E-value=0.12 Score=55.74 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..-++..+++.++..+|++-+++|+.++|+.+-.++..|++++++|++.+|+..++..+.-+|++.
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 333445555555555555555555555555555555555555555555555555555555455443
No 152
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.32 E-value=0.099 Score=52.00 Aligned_cols=72 Identities=14% Similarity=0.026 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
...+|.-++.+|.++|+++.|-..+.+|+++.|+.+..+.++|-.++.-|+++.|...+..+....+.+..+
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v 204 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRV 204 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHH
Confidence 456788999999999999999999999999999999999999999999999999999999988776666633
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.089 Score=53.54 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211 28 LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ 84 (665)
Q Consensus 28 ~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 84 (665)
.+.-+.-.+..|..||++++.|..+|.+|+.+|++.+|...|.+|.++.|+|..+.-
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~ 194 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILL 194 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHH
Confidence 456677778888899999999999999999999999999999999999999985543
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.04 E-value=0.056 Score=43.03 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRG 53 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a 53 (665)
...++.++|.+|+++|+|++|+++++++++.+|+.+.+..-++
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 5677999999999999999999999999999999988765444
No 155
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.00 E-value=0.037 Score=36.37 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 47 KAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
.|++++|.++..+|++++|++.|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36788888888888888888888888877775
No 156
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.99 E-value=0.18 Score=50.67 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ 84 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 84 (665)
.+|-|..+++.|+|..|..-+..=++.=|+. +.|+|=+|++++.+|+|++|...|..+.+--|+....++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence 7788888999999999999888888876653 678888999999999999999999888887777654433
No 157
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=94.89 E-value=0.018 Score=64.21 Aligned_cols=61 Identities=23% Similarity=0.218 Sum_probs=48.5
Q ss_pred EEEeccccccccCCCcCCcEEEEe-CCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCee
Q 048211 373 GLAIYTAGSLFNHSCLPNIHAYFL-SRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFR 441 (665)
Q Consensus 373 g~glyp~~Sl~NHSC~PN~~~~f~-g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~ 441 (665)
-.++.|..=+.||+|.+....++. +..+.+.+.++|.+||||+|+||+. + ...|...|+|.
T Consensus 230 ~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~~----~----N~eLL~~YGFv 291 (472)
T KOG1337|consen 230 NEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYGPK----S----NAELLLHYGFV 291 (472)
T ss_pred chhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecCCC----c----hHHHHHhcCCC
Confidence 357999999999999994443333 3489999999999999999999974 2 23466689998
No 158
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.06 Score=52.75 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=58.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 19 ASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 19 a~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
+..++.-.+|..|+..+.+||.++|..+..|.+||.|++++.+++-+..|-.+|++++|+....
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~ 80 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKA 80 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHH
Confidence 4456667789999999999999999999999999999999999999999999999999997543
No 159
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.84 E-value=0.095 Score=56.52 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
+.--|..+++.++|+.|+.-+.+|.++.|+..+.|+.+|++|..+|+|+.|+..++.+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 3334444555555566666666666655555566666666666666665555555433
No 160
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.76 E-value=0.097 Score=53.53 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=66.5
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
-..|.+|...|..+....+.+.|+....+|++.||+...|=.-+|.+....|+|+.|++.++.+++-+|.-
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999998874
No 161
>PRK11906 transcriptional regulator; Provisional
Probab=94.75 E-value=0.12 Score=55.73 Aligned_cols=73 Identities=14% Similarity=-0.043 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 10 LVATLYVNRASVLQKR---------DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l---------~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..+.+|.-+|.|++.. ..-.+|++-+++|+++||+++.|++.+|.++...++++.|...|++|+.++|+..
T Consensus 293 ~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A 372 (458)
T PRK11906 293 LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA 372 (458)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH
Confidence 3577777788777764 2356789999999999999999999999999999999999999999999999976
Q ss_pred HH
Q 048211 81 GK 82 (665)
Q Consensus 81 ~~ 82 (665)
..
T Consensus 373 ~~ 374 (458)
T PRK11906 373 SL 374 (458)
T ss_pred HH
Confidence 43
No 162
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.75 E-value=0.041 Score=56.76 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
..+..+.+..+...|+++++.+-+....+..|+++..|...|.++..+|++++|+..|+++++.+|++..
T Consensus 180 ~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 180 PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 3345566777888899888777777777776777778888899999999999999999999999998764
No 163
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.62 E-value=0.26 Score=53.17 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
..+.+-+|..++..+.+++|+.-.+.-++..|+|+-.+--++..+...++.++|.+.+++++.++|+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 34455566666666666666666666666666666666666666666666666666666666666664
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.54 E-value=0.1 Score=53.38 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 17 NRASVLQKRDHLVECLRDCNRAVQICPSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 17 NRa~~~~~l~~~~~al~d~~~al~~~p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
-++.++...|+|+.|++.++++++.||+| +...-++..||..+|+.++....+..+.+..++..
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 35668889999999999999999999998 67888899999999999999999999998877654
No 165
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.50 E-value=0.055 Score=34.33 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSY 45 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~ 45 (665)
.++.++|.++..+++++.|+..+.++++.+|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998753
No 166
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.47 E-value=0.058 Score=52.49 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=57.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 20 SVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 20 ~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
....+-++++.|.+-+++|+++-|.+...|+|.|.-..+-|+++.|.+.|++.++++|.+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567789999999999999999999999999999999999999999999999999998754
No 167
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.45 E-value=0.078 Score=59.53 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRES 77 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p 77 (665)
.+..-.|++++.|.+++++++.|..++.+.+.++|++..+|.+.+.+|..++.-.+|...++.|++-+-
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 345667999999999999999999999999999999999999999999999999999999999998653
No 168
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.40 E-value=0.033 Score=59.80 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
|..+.|-|.-+++-+.|+.|+.-+.+||+++|+.+-.|-.|+.++.+.++|..|+.|+.+|++++|..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 44566778889999999999999999999999999999999999999999999999999999999975
No 169
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.19 E-value=0.038 Score=37.64 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 48 AWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 48 a~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
+|.++|.++..+|+|++|++.|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556666666666666666666665443
No 170
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=94.17 E-value=0.0086 Score=59.55 Aligned_cols=34 Identities=21% Similarity=0.522 Sum_probs=27.9
Q ss_pred cccccccccccccCCcCCCCCCCccccchHHHHhhh
Q 048211 162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAG 197 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~ 197 (665)
..+|..|..+- ...+|+.|+.+.||+++||+-.|
T Consensus 319 ~~fCstCG~~g--a~KrCs~CKav~YCdqeCQk~hW 352 (396)
T KOG1710|consen 319 CQFCSTCGHPG--AKKRCSQCKAVAYCDQECQKFHW 352 (396)
T ss_pred cccccccCCCC--ccchhhhhHHHHHHHHHHHHhhh
Confidence 46777787753 35799999999999999999765
No 171
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.03 E-value=0.014 Score=59.90 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=56.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 20 SVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 20 ~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.-.+..|.++.|++.+..||+++|..+..|..||.++.+|++...|+.|+..|++++|+..
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence 3345678899999999999999999999999999999999999999999999999999864
No 172
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.98 E-value=0.1 Score=60.41 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=55.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChH
Q 048211 21 VLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-HDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 21 ~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-~~~A~~~~~~al~l~p~~~ 80 (665)
--++.++|++|++.+.++|+.||+|.-|+.-+|.++..++. .++|.+.|..|.+++|++-
T Consensus 11 ~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnl 71 (1238)
T KOG1127|consen 11 DALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNL 71 (1238)
T ss_pred HHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhh
Confidence 34566799999999999999999999999999999999999 9999999999999999984
No 173
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.78 E-value=0.18 Score=54.44 Aligned_cols=40 Identities=15% Similarity=-0.025 Sum_probs=38.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 41 ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 41 ~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+|+++.+|+++|.+|..+|+|++|+..|+++++++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 4688999999999999999999999999999999999976
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.65 E-value=0.17 Score=39.30 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA 46 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ 46 (665)
-.+.++..+|.+++++|++++|+..++++++.+|++|
T Consensus 29 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 29 DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3788899999999999999999999999999999976
No 175
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.65 E-value=0.27 Score=49.88 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
...|.+-.|.|.-..+.|+.++|..-+..|+.++|.++.++.+.|+....-++.-+|-..|-+|+.++|.|+..
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 34677888888889999999999999999999999999999999999988888999999999999999998743
No 176
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.60 E-value=0.48 Score=53.12 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
-+..-++.++...|++++|++.....-+.-.+....+-.+|.++.++|++++|...|...++.+|+|..-
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Y 74 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDY 74 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 3445567789999999999999998887778888999999999999999999999999999999998743
No 177
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=93.55 E-value=0.042 Score=47.96 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=28.6
Q ss_pred eEeeecCCCCcccccccCCCCCCcccccCCceec
Q 048211 122 LQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVT 155 (665)
Q Consensus 122 ~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~~ 155 (665)
+++..++.+|+||+|+++|++|++|+...+.+..
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~ 35 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIIT 35 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEEC
Confidence 3456678999999999999999988887777765
No 178
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.37 E-value=0.41 Score=56.77 Aligned_cols=70 Identities=7% Similarity=0.015 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
...+...|..|..+|+|++|++-++++++.+|+++.+++-++..+..++++++|++.++++...+|++..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 3444445778889999999999999999999999999998889999999999999999999999998643
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.74 Score=47.00 Aligned_cols=67 Identities=7% Similarity=-0.071 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCChH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN---HDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~---~~~A~~~~~~al~l~p~~~ 80 (665)
-|.-.+-+|+.++++..|+.-|.+|+++.|+++..+.-.|.+++.... -.+|.+.|+++++++|+|-
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i 227 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI 227 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH
Confidence 355677888888888888888888888888877666666666655533 2455666666666666654
No 180
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.16 E-value=0.37 Score=50.04 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 27 HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 27 ~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+++|..-++..-+.-+..++.+..+|.|++.+|+|++|.+.++.++..+|++.
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 467777766664443355667777777777777777777777777777776654
No 181
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.25 Score=52.27 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCC
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDA-VHDLTIAKNRESS 78 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A-~~~~~~al~l~p~ 78 (665)
+..+++.|+.|++.+++|+.|..|+.+|++++|+|-.+-..+..+..+..++.+. .+.|..++..-+.
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 6678899999999999999999999999999999977777778888888887766 5677777765443
No 182
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.94 E-value=0.38 Score=56.89 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.++..+|.||-++|++++|+..++++|++||+++.++.+.|-.|... +.+.|++.+.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999 999999999998765
No 183
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.88 E-value=0.35 Score=51.48 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
+.++.+.|.+|+..|++++|+..+++++...|.. ...|+.+|.++...|++++|+..|+++....|.
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 5678889999999999999999999999997643 346778999999999999999999999776663
No 184
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.80 E-value=0.65 Score=46.79 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=69.5
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ 84 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 84 (665)
....+.+++=.+.+++.+|+|++|..-+..+.+-.|+. |++++.+|.+...+|+.++|...|+.+.+-=|+......
T Consensus 174 s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 174 STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 44566777778999999999999999999999988775 577999999999999999999999999999999876544
Q ss_pred HHH
Q 048211 85 IES 87 (665)
Q Consensus 85 ~~~ 87 (665)
.+.
T Consensus 254 Ak~ 256 (262)
T COG1729 254 AKV 256 (262)
T ss_pred HHH
Confidence 433
No 185
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=0.57 Score=51.69 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
..++-+|.|+++++..++|+.+++ .+|+...+++.-+|+.++++|+|++|++.|+...+-+.++
T Consensus 80 ~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 80 SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 344789999999999999999999 7788888999999999999999999999999987765543
No 186
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.63 E-value=0.25 Score=33.55 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQIC 42 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~ 42 (665)
+|.|.|.+|.++|+|++|++-++++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999977653
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=0.34 Score=48.27 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.-..+.|.+..|+-.++|..|...+++.+..||.++-+-.++|.|++.+|+..+|++.++.+....|.....
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 445678888999999999999999999999999999999999999999999999999999999999986543
No 188
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.42 E-value=0.19 Score=51.37 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQIC--PS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~--p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
...+|.|.+.|-+.-++|+-++..+.+|+..- |+ -++.||++|.+....|++.-|...|+-++.-++++.+
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 45679999999999999999999999999884 44 4789999999999999999999999999999998763
No 189
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=92.02 E-value=1.4 Score=48.02 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYA-KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES 87 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 87 (665)
|..-+.+..++|+++.|.+.+.+|.+.+|++. -...+.+..+...|+++.|.+.++++.+.+|++.....+..
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~ 194 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAE 194 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 44445555899999999999999999988874 33456689999999999999999999999999875544433
No 190
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=92.00 E-value=0.83 Score=53.21 Aligned_cols=82 Identities=22% Similarity=0.159 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESE 88 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 88 (665)
.+.-+.-+|+|.++-.++++..|-+-|..+++..|+|..+|.|+|......++..+|...+..++..+..+..+..+...
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 35567789999999999999999999999999999999999999976677889999999999999999888776666654
Q ss_pred HH
Q 048211 89 LK 90 (665)
Q Consensus 89 l~ 90 (665)
+.
T Consensus 573 ~~ 574 (1018)
T KOG2002|consen 573 LH 574 (1018)
T ss_pred HH
Confidence 43
No 191
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.69 E-value=1.4 Score=37.06 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 31 CLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 31 al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+....++++.||+++.+.+..|..+...|++++|++.+-.+++.+++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4677889999999999999999999999999999999999999988764
No 192
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.65 E-value=1.2 Score=42.72 Aligned_cols=76 Identities=21% Similarity=0.189 Sum_probs=60.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.|..+.+++-.+.|.+.+++|.+++|+.-.+..-+ +++ +-.-..||.++...|+-.+|...|++++..+++...
T Consensus 118 ~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 118 QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 4667788999999999999999999999886654332 233 233567899999999999999999999998866543
No 193
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.47 E-value=1.3 Score=44.32 Aligned_cols=73 Identities=11% Similarity=-0.051 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.-+.-+.|-|...++-|+|++|++.+++....-|.. .++.+-.+.++++-++|++|+..+++.+++.|++..+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 356778899999999999999999999999887664 6899999999999999999999999999999987644
No 194
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.46 E-value=1 Score=49.09 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=51.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 24 KRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 24 ~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
..++.++++.-++..++..|+++..++-.|..+...++|++|.+.|+++++.+|++..
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 3477888888888888888999999999999999999999999999999999999875
No 195
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.39 E-value=0.55 Score=52.33 Aligned_cols=67 Identities=13% Similarity=-0.000 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 16 VNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 16 ~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
+-.+..+..+|+-++|...+..++..|+...--|.-.|..+..-.+|.+|+..|+.|+.++|+|..+
T Consensus 45 AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qi 111 (700)
T KOG1156|consen 45 AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQI 111 (700)
T ss_pred HhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 3456677888888999999998888888888889999999999999999999999999999999843
No 196
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.36 E-value=0.34 Score=51.20 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=57.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 19 ASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 19 a~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+..++..++|..|+.-.+++|..||.+..||.-+|..+..+|+.++|+-.|+.|..+.|..-
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH
Confidence 45567788999999999999999999999999999999999999999999999999998753
No 197
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.35 E-value=0.54 Score=44.48 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCChH
Q 048211 26 DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENH----------DDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 26 ~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~----------~~A~~~~~~al~l~p~~~ 80 (665)
--|+.|.+.++.+...||.++++++|=|-++..|.++ ++|+.-|+.|+.++|+..
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h 69 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH 69 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH
Confidence 3488999999999999999999999999999888554 677888999999999964
No 198
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.14 E-value=0.51 Score=49.97 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
+.+..-...+.||+++++.+.|+....+.|-+||.|+.-++|+|.|+..|.+|.+|-..+..|.-
T Consensus 226 vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 226 VASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667899999999999999999999999999999999999999999999999887766644
No 199
>PRK14574 hmsH outer membrane protein; Provisional
Probab=91.05 E-value=2.2 Score=50.81 Aligned_cols=74 Identities=7% Similarity=-0.041 Sum_probs=64.6
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
++....++..++.++...|++.+|.+-+++.+...|+++..+..+|.++...|++.+|+..++.+..++|++..
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 34455788889999999999999999999999999999999999999999999999999999888888998754
No 200
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.05 E-value=0.81 Score=47.04 Aligned_cols=77 Identities=4% Similarity=-0.059 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 048211 16 VNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIIL 93 (665)
Q Consensus 16 ~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 93 (665)
...+-||+++|.+.+|...+..+|+-. ..++.|.-++++|.++.....|+..|...+..-|.+.+..-...++.+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 357889999999999999999999865 35788888999999999999999999999999998865433333333333
No 201
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.54 E-value=0.32 Score=50.30 Aligned_cols=60 Identities=13% Similarity=-0.108 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
.+-.=.|-|++++|+|++|+..++.+.+-+.-+++.+..+|-|+..||.|.+|.....+|
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 333446889999999999999999998876667899999999999999999998765543
No 202
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=90.36 E-value=0.24 Score=55.06 Aligned_cols=43 Identities=23% Similarity=0.198 Sum_probs=34.6
Q ss_pred ccccccCCCcCCcEE---EEeC-CEEEEEEeecCCCCCceeeecCCC
Q 048211 379 AGSLFNHSCLPNIHA---YFLS-RTLMIRTTEFVPSGYPLELSYGPQ 421 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~---~f~g-~~~~vrA~r~I~~GeeI~isY~~~ 421 (665)
.+=+.|||=.||+.. +..| .+|-++|.|.|.+|||||..|...
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence 455789999999933 2334 478899999999999999999853
No 203
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.28 E-value=0.53 Score=30.66 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPS 44 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~ 44 (665)
++.+.|.+|.++|++++|++.++++++.-|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 6789999999999999999999999998776
No 204
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.16 E-value=3.3 Score=37.27 Aligned_cols=85 Identities=9% Similarity=0.060 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211 10 LVATLYVNRASVLQKRDH---LVECLRDCNRAVQ-ICPS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ 84 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~---~~~al~d~~~al~-~~p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 84 (665)
+.....+|.|.++.+..+ .++.+.-++..++ -.|. .-.-+|-+|..++++++|+.|+...+..++.+|+|.....
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345567888999988765 4455665666665 2333 3455678899999999999999999999999999998878
Q ss_pred HHHHHHHHHh
Q 048211 85 IESELKIILD 94 (665)
Q Consensus 85 ~~~~l~~~~~ 94 (665)
+++.++..+.
T Consensus 110 Lk~~ied~it 119 (149)
T KOG3364|consen 110 LKETIEDKIT 119 (149)
T ss_pred HHHHHHHHHh
Confidence 8777766554
No 205
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=89.99 E-value=0.23 Score=37.06 Aligned_cols=31 Identities=35% Similarity=0.831 Sum_probs=22.0
Q ss_pred cccccccccc-CCcCCCCCCCccccchHHHHh
Q 048211 165 CHYCLNELPA-DAIPCTSCSIPLYCSRRCRGQ 195 (665)
Q Consensus 165 C~~C~~~~~~-~~~~C~~C~~~~YCS~~C~~~ 195 (665)
|..|....+. ..+.|+.|+++.|||++=...
T Consensus 2 Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~ 33 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDCGIPTHCSEEHWED 33 (55)
T ss_pred CCCCccccccccCCcCCCCCCcCccCHHHHHH
Confidence 6666664332 357999999999999864443
No 206
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=89.83 E-value=1.3 Score=49.59 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKII 92 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 92 (665)
|..-+...-.+++.++|++-++.+|+.=|+++|.|..+|+++..+++.+.|.+.|...++.-|+.....-++..++..
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 333333444588999999999999999999999999999999999999999999999999999976554444444443
No 207
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.69 E-value=0.78 Score=31.62 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQI 41 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~ 41 (665)
+.++.|.|.+|..+|+|++|+.-+.+++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 456778888888888888888888777765
No 208
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=89.61 E-value=1.6 Score=47.76 Aligned_cols=69 Identities=10% Similarity=0.048 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYA-KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.-.|.++.++|+++.|.+.+.++.+..|+.. .+...++..+...|++++|.+.++...+..|++...
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~ 189 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEV 189 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 344556677777777777777777777766654 333335777777777777777777777777777644
No 209
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=89.55 E-value=3.3 Score=45.30 Aligned_cols=70 Identities=7% Similarity=-0.041 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.-...+|...+..|+|+.|.+...++.+..|+..-.+.-.|++...+|+++.|.+.|.++.+..|++.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~ 152 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN 152 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc
Confidence 4566678999999999999999999999999999888889999999999999999999999999888864
No 210
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.33 E-value=0.49 Score=50.33 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=51.6
Q ss_pred CCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 6 KDRNLVATLYVNRASVLQKRD--HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 6 ~~~~~~a~~~~NRa~~~~~l~--~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
+++.+.+.+-.|.++.++-+| ++..|-..++.|+..|..++.|+.++|...+..|+++.|.+.|+.|+.-+.+
T Consensus 448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 355666677777777776643 5777777777777777777777777777777777777777777777665443
No 211
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=2.5 Score=44.96 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKI 91 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~ 91 (665)
+-.-.|..+...|++++++.-.+++|..-|+. -....+|..+...+.+.+|.+.|.+|++++|+++...+..+.+++
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 33445666777888999999999998876553 345557999999999999999999999999999865555555544
No 212
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.15 E-value=0.56 Score=32.39 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 47 KAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
+.|.++|.+-...++|++|++||++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788899999999999999999998876
No 213
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.08 E-value=1.7 Score=46.37 Aligned_cols=72 Identities=17% Similarity=0.100 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..++.+..|.+..-+--|+++.|++.+..||..|..-..|+|+.|..+.++|+.++|++.|-+...+--++.
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~ 558 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA 558 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH
Confidence 357788889998889999999999999999999888899999999999999999999999988777655554
No 214
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=88.98 E-value=0.53 Score=36.63 Aligned_cols=44 Identities=11% Similarity=-0.045 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGK 54 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~ 54 (665)
...++.+.|.+|+++|++++|.+-+.+++..+|+++..+.-+++
T Consensus 24 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 24 NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 55667899999999999999999999999999998777655554
No 215
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=88.97 E-value=0.65 Score=54.14 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+..|+..|++-+++-.|+.++..|+..+|....+|.-+|++|-.-|+|..|++.|.+|..++|...
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 3455888899999999999999999999999999999999999999999999999999999999874
No 216
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=1.6 Score=43.20 Aligned_cols=70 Identities=9% Similarity=0.005 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQI--------CPSYA----------KAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~--------~p~~~----------ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
...++..++.-+|++|+|++|..-|..|+.. .|..+ ..+.+..+|+...|+|-++++.-...
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3346678999999999999999999988754 34432 46899999999999999999999999
Q ss_pred HhcCCChH
Q 048211 73 KNRESSLA 80 (665)
Q Consensus 73 l~l~p~~~ 80 (665)
+..+|.|.
T Consensus 257 L~~~~~nv 264 (329)
T KOG0545|consen 257 LRHHPGNV 264 (329)
T ss_pred HhcCCchH
Confidence 99999985
No 217
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.55 E-value=5.5 Score=39.84 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..|-.+-++.-.+|+--+||+....-++.=+++..||...+..|..+|.|+.|.=.|+..+-+.|.+.
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 33333444444455555555555555555555555666666666666666666655665555555554
No 218
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=86.00 E-value=1.5 Score=45.46 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCChHHHHHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV-HDLTIAKNRESSLAGKKQI 85 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~-~~~~~al~l~p~~~~~~~~ 85 (665)
..+++..|.+++.+|+|++|.+.+..|++.+|+++.++.+++-+...+|+..++. +.+......+|+..-...+
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 4567789999999999999999999999999999999999999999999995544 5555656678887654443
No 219
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=85.82 E-value=7.3 Score=42.21 Aligned_cols=69 Identities=17% Similarity=-0.001 Sum_probs=59.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 18 RASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
.|.+++..++..+|++-+.++|+.+|..+..+.-.|..+...++|+.|++..+++.++.|++-.....+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~L 274 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQL 274 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 577777888899999999999999999999999999999999999999999999999999876544433
No 220
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=85.77 E-value=2.2 Score=48.03 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRD--------HLVECLRDCNRAVQI--CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~--------~~~~al~d~~~al~~--~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.+|+-+|.+|.... +...+.+...+++.+ +|..+.+|.-+|......|++++|...|++|+.++|+..
T Consensus 375 ~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~ 454 (517)
T PRK10153 375 FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWL 454 (517)
T ss_pred cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHH
Confidence 4556666666665432 345666777777775 677888998899999999999999999999999999743
No 221
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=85.67 E-value=3.9 Score=45.89 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.-.+.-.|.-|.++|+++.|+..++.||..-|..+..|.-+|+++..+|++++|...+..+-++|-.+-
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 35566667899999999999999999999999999999999999999999999999999999999977664
No 222
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=85.49 E-value=1.7 Score=44.89 Aligned_cols=68 Identities=9% Similarity=0.142 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211 9 NLVATLYVNRASVLQKR-DHLVECLRDCNRAVQIC--PSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l-~~~~~al~d~~~al~~~--p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~ 76 (665)
...+.++.+.|..|... ++++.|++.+.+|+++= .+. .+.+...|..+..+|+|++|++.|++.....
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 44678899999999998 99999999999999871 222 4667888999999999999999999877653
No 223
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.31 E-value=4.4 Score=41.54 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=61.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
++...++...+.++...++++.+++..++-+..+|.+-++|.+.-.+|+..|+...|+..|+..-++
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999999999999999999999999877653
No 224
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=2.2 Score=47.09 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+..|+-.|.=|+-.|++.+|-+.+.+|-.+||.+..||.-.|..+...++.++|+..|..|.++-|..
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 456677788888889999999999999999999999999999999999999999999999999987764
No 225
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.45 E-value=3.2 Score=45.94 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
-..|.|.++++-+...+|-.-...+|.++..-|-.++-.|.++..|.+.+.|++.|+.|++++|++...
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence 467899999999999999999999999986677788889999999999999999999999999998743
No 226
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=84.20 E-value=3 Score=49.63 Aligned_cols=35 Identities=6% Similarity=-0.088 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 47 KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 47 ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.|++.+|.||.++|++++|...|+++++++|+|..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~ 151 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE 151 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH
Confidence 68999999999999999999999999999999864
No 227
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.13 E-value=4.5 Score=34.10 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=47.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211 20 SVLQKRDHLVECLRDCNRAVQIC-----P----SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 20 ~~~~~l~~~~~al~d~~~al~~~-----p----~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~ 76 (665)
+-..+.++|.+|++...+.+..- + .+.-++..+|.....+|++++|+..++.++++-
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34578899999999999888662 1 135678899999999999999999999998873
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=83.70 E-value=0.45 Score=50.18 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
....+|-|.+..|+-+|+|+.|+..-..-|.+...+ -.|+.++|.|+..+|+|+.|++.|+..+.+
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 345688899999999999999999877777764333 357778899999999999999999987654
No 229
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.84 E-value=0.81 Score=30.66 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECL 32 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al 32 (665)
-.+.+|.|+|.+|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 36788999999999999999986
No 230
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=82.29 E-value=6.8 Score=37.41 Aligned_cols=67 Identities=7% Similarity=0.027 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPS--YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~--~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
....+|.+.+.++++.+|..-.+...+.+|. .|+...-.|.++..+|++.+|...|+.++..-|+..
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 3445666666666666666666666666655 245555556666677777777777776666666544
No 231
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.07 E-value=3.8 Score=43.17 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=61.7
Q ss_pred ccHHHHHHHHhhhhcceeeccccccCCCCCCCCCCCCCccccccceeEEEeccccccccCCCc-CCcEEEEeCCEEEEEE
Q 048211 326 ASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCL-PNIHAYFLSRTLMIRT 404 (665)
Q Consensus 326 ~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~g~glyp~~Sl~NHSC~-PN~~~~f~g~~~~vrA 404 (665)
.+......+.+.+.--+|.|.-..+.+.. ..+.+-.+.|-..-|.+-++||.=. -|+...++++.+.+.|
T Consensus 174 ~slEdF~y~~Al~laysfdve~~~s~~~~---------eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva 244 (466)
T KOG1338|consen 174 PSLEDFMYAYALGLAYSFDVEFLLSLDNL---------EEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVA 244 (466)
T ss_pred cCHHHHHHHHHHHHHHheeeehhcchhhh---------hhhhccccCcccccchhhhhccchhhcccceeccCcceeeee
Confidence 34555556666666667777432111100 1122236678889999999999876 7777778889999999
Q ss_pred eecCCCCCceeeecCCC
Q 048211 405 TEFVPSGYPLELSYGPQ 421 (665)
Q Consensus 405 ~r~I~~GeeI~isY~~~ 421 (665)
.|+|++|+|++.+|+..
T Consensus 245 ~r~iekgdev~n~dg~~ 261 (466)
T KOG1338|consen 245 DRNIEKGDEVDNSDGLK 261 (466)
T ss_pred cCCCCCccccccccccC
Confidence 99999999999999854
No 232
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.04 E-value=8.4 Score=38.57 Aligned_cols=72 Identities=10% Similarity=-0.047 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.-.+|-....+.+..++...|..-++..-.-=|+..+.---.|.-+...|+|++|++.|+..++-+|.+...
T Consensus 51 ~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~ 122 (289)
T KOG3060|consen 51 IWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI 122 (289)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH
Confidence 345566667777777777777665554333337777776667888888888888888888888888887643
No 233
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.56 E-value=8 Score=43.07 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------------------CHHHHHHHHHHHHHcCCH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPS-------------------------------YAKAWYRRGKVNVSLENH 62 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-------------------------------~~ka~~r~a~~~~~l~~~ 62 (665)
+.-=||++++++|+|++|+.-|...++.+.+ ....+|+.|-++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 4455999999999999999988877654321 235689999999999999
Q ss_pred HHHHHHHHHHHh
Q 048211 63 DDAVHDLTIAKN 74 (665)
Q Consensus 63 ~~A~~~~~~al~ 74 (665)
.+|++.+++|++
T Consensus 192 ~qA~elL~kA~~ 203 (652)
T KOG2376|consen 192 NQAIELLEKALR 203 (652)
T ss_pred HHHHHHHHHHHH
Confidence 999999999944
No 234
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.34 E-value=3.9 Score=45.74 Aligned_cols=70 Identities=23% Similarity=0.163 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICP------SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p------~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+-.++.|-|.-+|+.++|..+++.+...+..=| .++|..-.++-||.+|...+.|++.++.|-+.+|.+.
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 456788999999999999999999999997633 3578887789999999999999999999999998875
No 235
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=80.23 E-value=8.4 Score=39.73 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC---CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC---PS---YA-KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~---p~---~~-ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.....++.+.|..+.++|+|++|++.++++...- +. .+ +.+++.+.|+..+|++-.|.+.+++....+|+-
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3467888999999999999999999999998752 21 13 456789999999999999999999999998864
No 236
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.11 E-value=5.7 Score=28.42 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 50 YRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 50 ~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
+.+|.+|..+|+++.|.+.++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4578888899999999888888884
No 237
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.89 E-value=3.1 Score=42.38 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLT 70 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~ 70 (665)
+....|.+-..++-|+|++|++.++.|++...-+|-.-|..|.|+++.|+|..|++...
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHH
Confidence 44566777778888888888888888888876677777888888888888888876544
No 238
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.69 E-value=13 Score=37.55 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 45 YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 45 ~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.++.+.-+|.|.+.+|+|++|...++.++.-+++.
T Consensus 206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 34555555555666666666666666555555544
No 239
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=79.54 E-value=1.1 Score=34.18 Aligned_cols=27 Identities=33% Similarity=0.870 Sum_probs=20.6
Q ss_pred cccccccccccccCCcCCCCCCCccccchHHHHhhh
Q 048211 162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAG 197 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~ 197 (665)
..||-.|.++++.+ -.|||++|++..+
T Consensus 3 HkHC~~CG~~Ip~~---------~~fCS~~C~~~~~ 29 (59)
T PF09889_consen 3 HKHCPVCGKPIPPD---------ESFCSPKCREEYR 29 (59)
T ss_pred CCcCCcCCCcCCcc---------hhhhCHHHHHHHH
Confidence 56899999887643 3679999998643
No 240
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=79.17 E-value=12 Score=43.09 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+.-.++.-+|..+.+.+.-++|..-+..|-+++|--+..|+-+|.++...|.+++|.+.|..|+.++|+..
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 35567778888888999989998889999999999999999999999999999999999999999999976
No 241
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=78.82 E-value=6.2 Score=26.87 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCCh
Q 048211 47 KAWYRRGKVNVSLENHDDAVHD--LTIAKNRESSL 79 (665)
Q Consensus 47 ka~~r~a~~~~~l~~~~~A~~~--~~~al~l~p~~ 79 (665)
+.++-.|-.+...|+|++|++. |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5667778888888888888888 44776666653
No 242
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=78.45 E-value=0.83 Score=50.44 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=39.0
Q ss_pred eEEEeccccc-cccCCCcCCcEEEEe----CCEEEEEEeecCCCCCceeeecCCC
Q 048211 372 VGLAIYTAGS-LFNHSCLPNIHAYFL----SRTLMIRTTEFVPSGYPLELSYGPQ 421 (665)
Q Consensus 372 ~g~glyp~~S-l~NHSC~PN~~~~f~----g~~~~vrA~r~I~~GeeI~isY~~~ 421 (665)
+-.+-+...| ++||||.||+.-.-. ...+.+.|.+.|+.|+|+|.+|.-.
T Consensus 363 id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~ 417 (463)
T KOG1081|consen 363 IDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGN 417 (463)
T ss_pred cccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeecc
Confidence 4445666555 789999999965432 3578999999999999999999743
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=78.32 E-value=12 Score=35.04 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 21 VLQKRDHLVECLRDCNRAVQICP---SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 21 ~~~~l~~~~~al~d~~~al~~~p---~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
++..+++++.|+..+.+++..+| .....++..+..+...++++.|+..+.+++...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 56666666666666666665554 24455555555555666666666666666665555
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=77.82 E-value=11 Score=35.15 Aligned_cols=66 Identities=24% Similarity=0.231 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQ--ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~--~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
..+...+..+...+.+..++.....++. ..+.....++..|.....++.+..|++.+..+....+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD 127 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC
Confidence 3444555555555555555555555554 34455555555555555555555555555555554443
No 245
>PLN03158 methionine aminopeptidase; Provisional
Probab=77.04 E-value=1.2 Score=48.23 Aligned_cols=36 Identities=25% Similarity=0.563 Sum_probs=28.6
Q ss_pred cccccccccccccCCcCCCCCCC-------ccccchHHHHhhhccc
Q 048211 162 ETHCHYCLNELPADAIPCTSCSI-------PLYCSRRCRGQAGGQV 200 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~~~C~~C~~-------~~YCS~~C~~~a~~~~ 200 (665)
...|..|.++ + .+.|+.|.- .+|||++|.+.+|..|
T Consensus 9 ~~~c~~c~~~--a-~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~H 51 (396)
T PLN03158 9 PLACARCSKP--A-HLQCPKCLELKLPREGASFCSQDCFKAAWSSH 51 (396)
T ss_pred cccccCCCCc--c-cccCccchhcCCCCCCceeECHHHHHHHHHHH
Confidence 4558899875 3 478888754 6899999999999876
No 246
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=76.82 E-value=12 Score=45.68 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=55.3
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHHH
Q 048211 596 ILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQR 658 (665)
Q Consensus 596 ~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~~ 658 (665)
..++..|..||....+|..|+...+...+...| ..+.||..++.+.||++||.+....-++..
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~ 1065 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLEL 1065 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHH
Confidence 667999999999999999999888888888888 999999999999999999998776444443
No 247
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.34 E-value=29 Score=34.29 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 9 NLVATLYVNRASVLQKRDH-------LVECLRDCNRAVQIC--PS----YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~-------~~~al~d~~~al~~~--p~----~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
...|.++...|-.|-.+++ +..|++-+.+|++.. |. ....+|-.|....++|++++|+..|.+++..
T Consensus 115 s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 115 SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3678888888999988887 456677777777654 22 2578999999999999999999999999876
Q ss_pred CC
Q 048211 76 ES 77 (665)
Q Consensus 76 ~p 77 (665)
..
T Consensus 195 ~~ 196 (214)
T PF09986_consen 195 KK 196 (214)
T ss_pred CC
Confidence 33
No 248
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=75.20 E-value=15 Score=35.15 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=43.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 20 SVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 20 ~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
.+..+.=+.+..++...+.++.-|.. .-.+|+|.++..+|++.+|+..|+.++.
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qals 117 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALS 117 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhc
Confidence 34445557788888888888876654 3468999999999999999999999886
No 249
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=75.18 E-value=4.2 Score=43.23 Aligned_cols=68 Identities=10% Similarity=0.024 Sum_probs=55.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC----PS--YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~----p~--~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
....-.+|.|.+.+|.-+|+++.|++.|.+++.+- .. -+..-|-+|..|..+.+|+.|++.+++-+.+
T Consensus 231 rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 231 RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999887552 11 2456788999999999999999988876554
No 250
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=75.13 E-value=5 Score=27.71 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQIC 42 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~ 42 (665)
.+|.-.|.+.+..++|+.|+.|+.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 457778888899999999999999999873
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.76 E-value=11 Score=39.21 Aligned_cols=69 Identities=9% Similarity=-0.108 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQI-CPSYA---KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~-~p~~~---ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+++.=+.. .+++.+|+...-..-+++++-. ||+.| -..-..+-++...|-|++|.+..++++++++.+.
T Consensus 137 lla~kfsh--~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~ 209 (491)
T KOG2610|consen 137 LLAVKFSH--DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDC 209 (491)
T ss_pred hhhhhhhh--hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcch
Confidence 44443433 4678889888888889999877 66643 2222346678889999999999999999999874
No 252
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.62 E-value=14 Score=37.84 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
+...++.-.|..|..-|.+.+|++-+.+++++||-....+.-.-+.+..+|+--.|...|++.
T Consensus 277 ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 277 LYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445556667888999999999999999999999998888888888999999988888877753
No 253
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.31 E-value=12 Score=39.28 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=55.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 21 VLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 21 ~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
+.+-.-.|++||+-+.++|.-+|.|.-.-..+|.|+++|.-|+-+.+.+..-++-.|+..-...++
T Consensus 160 vhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 160 VHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence 334444699999999999999999988888899999999999999999999999999887554443
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=73.13 E-value=12 Score=41.74 Aligned_cols=66 Identities=9% Similarity=0.155 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA----KAWYRRGKVNVSLENHDDAVHDLTIAKNRES 77 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~----ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p 77 (665)
+..+..+|..+...|+.++|++-+++|+.....++ =.++.+|-++..+++|++|.+.+....+.+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 45567777788888888888888888775443332 2467778888888888888887777666543
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=70.29 E-value=51 Score=29.78 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPS----------Y------------AKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~----------~------------~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
+...+......++.+.++..+.+|+.+-.+ + ..++.+.+..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344566667788999999999999987311 1 255677788889999999999999999
Q ss_pred HhcCCChHH
Q 048211 73 KNRESSLAG 81 (665)
Q Consensus 73 l~l~p~~~~ 81 (665)
+.++|-++.
T Consensus 89 l~~dP~~E~ 97 (146)
T PF03704_consen 89 LALDPYDEE 97 (146)
T ss_dssp HHHSTT-HH
T ss_pred HhcCCCCHH
Confidence 999999874
No 256
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=69.00 E-value=46 Score=26.85 Aligned_cols=29 Identities=10% Similarity=0.033 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 62 HDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 62 ~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
|.+|++.+.++++..|++..+.-.+..+.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~ 57 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMIN 57 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 33444445566666777665444444433
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=67.34 E-value=50 Score=33.28 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCC
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLEN--------HDDAVHDLTIAKNRES 77 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~--------~~~A~~~~~~al~l~p 77 (665)
+..-.+....+.++++-++|++|+..+++=+.+.|++ .-++|-+|.++...=+ -.+|+.+|+..+.-=|
T Consensus 68 ~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 68 PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 3445667778899999999999999999999998776 4678889998765432 2477788888888889
Q ss_pred ChHHHHHHHHHHHHH
Q 048211 78 SLAGKKQIESELKII 92 (665)
Q Consensus 78 ~~~~~~~~~~~l~~~ 92 (665)
+..-....+..+..+
T Consensus 148 nS~Ya~dA~~~i~~~ 162 (254)
T COG4105 148 NSRYAPDAKARIVKL 162 (254)
T ss_pred CCcchhhHHHHHHHH
Confidence 886555555555444
No 258
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=67.31 E-value=51 Score=29.24 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCC----------HHH--HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 11 VATLYVNRASVLQ--KRDHLVECLRDCNRAVQICPSY----------AKA--WYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 11 ~a~~~~NRa~~~~--~l~~~~~al~d~~~al~~~p~~----------~ka--~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
.+.+|.-.|.+-- +-|.|++|...|.+|++....- .+| +.-++.++..||+|++++.....++.
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3455555555544 4478999999999999884221 133 44568899999999999988887775
No 259
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.87 E-value=26 Score=34.52 Aligned_cols=50 Identities=6% Similarity=0.034 Sum_probs=40.2
Q ss_pred HHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCc
Q 048211 598 EKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAE 647 (665)
Q Consensus 598 ~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~ 647 (665)
.+.-+..+-.+|..+++++.++-..++-+.. ..+++|...+.-.|.....
T Consensus 107 ~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 107 AQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 3556666679999999999999999987776 8999999888888755443
No 260
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=66.73 E-value=26 Score=37.34 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=39.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211 36 NRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 36 ~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
++.++..|+.|-.+.-+|..+++-+.|.+|...|+.+++..|+.++..
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~ 365 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA 365 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH
Confidence 333344566778889999999999999999999999999999876543
No 261
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.31 E-value=10 Score=23.46 Aligned_cols=22 Identities=18% Similarity=0.130 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 048211 48 AWYRRGKVNVSLENHDDAVHDL 69 (665)
Q Consensus 48 a~~r~a~~~~~l~~~~~A~~~~ 69 (665)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 262
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=65.30 E-value=6.8 Score=39.43 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=22.6
Q ss_pred eeEeeecCCCCcccccccCCCCCCcccc
Q 048211 121 QLQCVTTPDKGRGITSQYDIPEGSLVHS 148 (665)
Q Consensus 121 ~~~v~~s~~~GR~lvAtrdi~~GevIl~ 148 (665)
.+.+..-.++|||++|++.|+.||-|..
T Consensus 257 gl~~~~~dgKGRGv~a~~~F~rgdFVVE 284 (392)
T KOG1085|consen 257 GLLEVYKDGKGRGVRAKVNFERGDFVVE 284 (392)
T ss_pred ceeEEeeccccceeEeecccccCceEEE
Confidence 3445566679999999999999998853
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.64 E-value=29 Score=35.65 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=49.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048211 18 RASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71 (665)
Q Consensus 18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~ 71 (665)
-+......|++.+|..-+..+++.+|.+.++..-++.|+...|+.++|...+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 456778899999999999999999999999999999999999999998877764
No 264
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=64.50 E-value=3.5 Score=26.84 Aligned_cols=28 Identities=32% Similarity=0.778 Sum_probs=18.5
Q ss_pred ccccccccccccCCcCCCCCCCccccchHHHH
Q 048211 163 THCHYCLNELPADAIPCTSCSIPLYCSRRCRG 194 (665)
Q Consensus 163 ~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~ 194 (665)
..|.-|... ....|++|+.. |||-+|.+
T Consensus 3 ~~C~vC~~~---~kY~Cp~C~~~-~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNP---AKYRCPRCGAR-YCSLACYK 30 (30)
T ss_dssp EEETSSSSE---ESEE-TTT--E-ESSHHHHH
T ss_pred CCCccCcCC---CEEECCCcCCc-eeCcEeEC
Confidence 457777762 36899999996 59999964
No 265
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.50 E-value=34 Score=35.78 Aligned_cols=78 Identities=17% Similarity=0.105 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQIC--PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKII 92 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~--p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 92 (665)
-.|||.+.....=.+.++.-.+....-. .+|.-.+--||-.+.++|+.++|...|++++.+.++...+..++..+..+
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~~l 411 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLDRL 411 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 3699998888877788888776555431 35666677789999999999999999999999999987776776666554
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=64.29 E-value=49 Score=29.95 Aligned_cols=62 Identities=15% Similarity=0.036 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQ-ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~-~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
=|.+.|.-++-...-++.+++.-+-|. .+..+|..++..|.||.++|+..+|-+.+.+|.+-
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 356677666666666777777776664 34567999999999999999999999999988765
No 267
>PRK04841 transcriptional regulator MalT; Provisional
Probab=63.30 E-value=21 Score=43.32 Aligned_cols=67 Identities=9% Similarity=-0.084 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICP------SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p------~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.+++.++..+|++++|+..+.+++..-. .-+.++.-.|.++...|++++|.+.+.+|+++.....
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 467899999999999999999999998631 2246788889999999999999999999998855443
No 268
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=63.27 E-value=9.5 Score=23.60 Aligned_cols=24 Identities=17% Similarity=-0.025 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCN 36 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~ 36 (665)
.++.++|.++..+|++++|..-++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467899999999999999987654
No 269
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=62.64 E-value=4.9 Score=25.22 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=19.2
Q ss_pred cccccccccccCCcCCCCCCCcc
Q 048211 164 HCHYCLNELPADAIPCTSCSIPL 186 (665)
Q Consensus 164 ~C~~C~~~~~~~~~~C~~C~~~~ 186 (665)
.|-.|.+.++.....|+.|++.+
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 58889998887788999999864
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=61.51 E-value=13 Score=38.98 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=58.9
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY-----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
....-.+|.|.+-.+-++.+|..++..+...+++.... ..+..-+|.++..|+.|+.|++.|+.|+++..++
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~ 155 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN 155 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 34567889999999999999999999999999884222 3566678999999999999999999999874443
No 271
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.46 E-value=27 Score=31.95 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 048211 46 AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESE 88 (665)
Q Consensus 46 ~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 88 (665)
++....+|+..+.-|+|.-|.+....++..+|+|...+.++.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~ 112 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKAD 112 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 4444555555566666666666666666666665554444443
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=61.37 E-value=28 Score=36.62 Aligned_cols=52 Identities=27% Similarity=0.348 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 048211 8 RNLVATLYVNRASVLQKR------DHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL 59 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l------~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l 59 (665)
....+.++.-+|.-...+ +.+++++..+..|++++|.+.|+|++.|..+..+
T Consensus 248 ~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 248 KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 456788888888777777 8899999999999999999999999999887665
No 273
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=60.62 E-value=20 Score=32.51 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWY 50 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~ 50 (665)
.+.+-.|..++++++|+.+++.++.-|+.+|+|..|..
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34455789999999999999999999999999987653
No 274
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=60.58 E-value=97 Score=33.91 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+|..++ -|.=++..|+|.+|+-.+....+++| .+.+|--.|.|++...+|++|-+.+.. +-|++
T Consensus 461 eian~La-DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~ 525 (549)
T PF07079_consen 461 EIANFLA-DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNE 525 (549)
T ss_pred HHHHHHH-HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCch
Confidence 3444443 45667889999999999999999999 788888889999999999999988874 44543
No 275
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=59.52 E-value=5.5 Score=28.31 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=21.1
Q ss_pred cccccccccccccCCcCCCCCCCccccchHHHHhhhc
Q 048211 162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGG 198 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~ 198 (665)
..+|-.|-+.+.. .-.-..|||++|+..++.
T Consensus 6 ~~yC~~Cdk~~~~------~~~~~lYCSe~Cr~~D~~ 36 (43)
T PF12855_consen 6 NDYCIVCDKQIDP------PDDGSLYCSEECRLKDQE 36 (43)
T ss_pred hhHHHHhhccccC------CCCCccccCHHHHhHhhh
Confidence 4567777776521 223468999999988764
No 276
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=59.27 E-value=4.9 Score=35.97 Aligned_cols=31 Identities=35% Similarity=0.765 Sum_probs=24.8
Q ss_pred cccccccccccccCCcCCCCCCCccccchHHHHh
Q 048211 162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQ 195 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~ 195 (665)
...|.-|++.. ..++|+.|.+++ ||-.|.+.
T Consensus 5 t~tC~ic~e~~--~KYKCpkC~vPY-CSl~CfKi 35 (157)
T KOG2857|consen 5 TTTCVICLESE--IKYKCPKCSVPY-CSLPCFKI 35 (157)
T ss_pred eeeehhhhcch--hhccCCCCCCcc-ccchhhhh
Confidence 46788898863 368999999865 99999875
No 277
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=59.11 E-value=84 Score=24.51 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=11.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHH
Q 048211 68 DLTIAKNRESSLAGKKQIESELKI 91 (665)
Q Consensus 68 ~~~~al~l~p~~~~~~~~~~~l~~ 91 (665)
.+..+++..++...+..+++.++.
T Consensus 34 ~l~~~~~~~~~~~~~~~l~~k~~~ 57 (69)
T PF04212_consen 34 YLMQALKSESNPERRQALRQKMKE 57 (69)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHH
Confidence 344445555554444444444443
No 278
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=58.98 E-value=6.5 Score=30.31 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=9.8
Q ss_pred cccchHHHHhhh
Q 048211 186 LYCSRRCRGQAG 197 (665)
Q Consensus 186 ~YCS~~C~~~a~ 197 (665)
-|||+.|+..+.
T Consensus 26 PFCS~RCk~IDL 37 (62)
T PRK00418 26 PFCSKRCQLIDL 37 (62)
T ss_pred CcccHHHHhhhH
Confidence 579999998664
No 279
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=58.88 E-value=2.1 Score=46.76 Aligned_cols=41 Identities=24% Similarity=0.530 Sum_probs=30.7
Q ss_pred ccccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCcc
Q 048211 161 RETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPME 207 (665)
Q Consensus 161 ~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~~ 207 (665)
...-|.+|.... .+-| |--..|||-+||+..|. -|+--|..
T Consensus 526 kKQWC~nC~~EA---iy~C--CWNTSYCsveCQQ~HW~-~H~ksCrr 566 (588)
T KOG3612|consen 526 KKQWCYNCLDEA---IYHC--CWNTSYCSVECQQGHWP-EHRKSCRR 566 (588)
T ss_pred HHHHHHhhhHHH---HHHh--hccccccCcchhhccch-hHhhhhcc
Confidence 567899999863 3445 56689999999999997 46655543
No 280
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=58.41 E-value=52 Score=36.98 Aligned_cols=64 Identities=11% Similarity=-0.093 Sum_probs=57.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCChHH
Q 048211 18 RASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI-AKNRESSLAG 81 (665)
Q Consensus 18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~-al~l~p~~~~ 81 (665)
++..+..++....++--...++..||.+++++..+|.+....|....+..++.. +....|++..
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~ 137 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAE 137 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHH
Confidence 999999999998999999999999999999999999999999998888877666 7888888864
No 281
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=58.14 E-value=1e+02 Score=32.95 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048211 18 RASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTI 71 (665)
Q Consensus 18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~ 71 (665)
|+...+..++|..|....+.+++..|.++.++--+.++|..+|+|.+....+.+
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 444444555555555555555555555555554455555555555554444443
No 282
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.00 E-value=84 Score=31.58 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.+..|...|.+|-.-+.|+.|-.-..+|.+.-.++ +|+|-..|..+..+..+.++++.|++|..+
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56778888888888899999988888888543222 688888888889999999999999999775
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=57.99 E-value=32 Score=36.28 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=58.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211 4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC------PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~------p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~ 76 (665)
++.+....+.+.+..|.+|-.+|+..+|.+.|+.|.++. +-++.-..-.|.+|...|+.+.|..-|+.|....
T Consensus 198 ~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 198 KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 334445677888889999999999999999999997773 2345556667999999999999999999987753
No 284
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=57.70 E-value=28 Score=38.81 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 28 LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 28 ~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.+.|.+-.....+.=|+.+=-++-+|+.+...|+.++|++.|++++..
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~ 296 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIES 296 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccc
Confidence 444444445555544666666677788888888888888888877743
No 285
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=57.59 E-value=5.2 Score=43.23 Aligned_cols=27 Identities=19% Similarity=0.312 Sum_probs=24.2
Q ss_pred eCCEEEEEEeecCCCCCceeeecCCCC
Q 048211 396 LSRTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 396 ~g~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
.|..|..||+|+|++||||.+.|++.+
T Consensus 120 ~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 120 IGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred ccCceEEEecccCCCCCeEEEEeccch
Confidence 457789999999999999999999875
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=57.18 E-value=53 Score=36.27 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 48 AWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 48 a~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+-.|.|.|..++|+.++|++.++..++..|..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~ 292 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNL 292 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc
Confidence 34667999999999999999999999887753
No 287
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.60 E-value=4.7 Score=28.29 Aligned_cols=10 Identities=60% Similarity=1.238 Sum_probs=8.6
Q ss_pred ccccchHHHH
Q 048211 185 PLYCSRRCRG 194 (665)
Q Consensus 185 ~~YCS~~C~~ 194 (665)
+.|||+.|+.
T Consensus 31 VkYCS~rCR~ 40 (42)
T PF10013_consen 31 VKYCSDRCRR 40 (42)
T ss_pred hccHHHHhcc
Confidence 6899999975
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=56.50 E-value=50 Score=36.50 Aligned_cols=66 Identities=12% Similarity=0.010 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS--YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~--~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
+...+....|.|.-++|+.++|++.+...++.+|. +--..+.+-.++..++.|.++...+.+--.+
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34555666789999999999999999999988764 4567889999999999999998888876544
No 289
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.43 E-value=94 Score=25.39 Aligned_cols=60 Identities=7% Similarity=0.030 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAW---YRRGKVNVSLENHDDAVHDLTI 71 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~---~r~a~~~~~l~~~~~A~~~~~~ 71 (665)
+.-...++.-++...+.+.|+.-..+||+-.++.+..| =-+.+++...|+|+++++....
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888899999999999999999887766543 3356788999999988875443
No 290
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=56.10 E-value=27 Score=41.06 Aligned_cols=65 Identities=14% Similarity=0.026 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
..|.-...+|.+.|++++|++-+++. ...| +...|..+..++...|+++.|...+++.++++|++
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 45777888999999999998876643 2223 35568888889999999999999999999999975
No 291
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.93 E-value=28 Score=35.75 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=50.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 22 LQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 22 ~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+.+-.+|++||+-+.--.+.+|..--++--+|.||+...+|..|.+.|+....+.|..+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~ 78 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE 78 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 36777889999888888888888888888899999999999999999999888888754
No 292
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=55.79 E-value=6.5 Score=23.87 Aligned_cols=22 Identities=36% Similarity=0.785 Sum_probs=17.4
Q ss_pred cccccccccccCCcCCCCCCCc
Q 048211 164 HCHYCLNELPADAIPCTSCSIP 185 (665)
Q Consensus 164 ~C~~C~~~~~~~~~~C~~C~~~ 185 (665)
.|.+|...++.+..-|+.|+..
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 4888999888777788888764
No 293
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=54.83 E-value=1.1e+02 Score=24.77 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 048211 62 HDDAVHDLTIAKNRESSLAGKKQIESELKI 91 (665)
Q Consensus 62 ~~~A~~~~~~al~l~p~~~~~~~~~~~l~~ 91 (665)
|.+|++.|..+++.+|+...+..++..+..
T Consensus 29 Y~~aie~l~~~lk~e~d~~~k~~~r~ki~e 58 (77)
T cd02683 29 YQEGIDLLMQVLKGTKDEAKKKNLRQKISE 58 (77)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 444455566666677776555444444443
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.70 E-value=84 Score=31.37 Aligned_cols=85 Identities=8% Similarity=0.124 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH--HH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKA-WYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK--KQ 84 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka-~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~--~~ 84 (665)
++...|.--..+++|..|++-++.+....-++ +|. +++.|.|++...+.-.|...+++..+++|+-... -+
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREck 235 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECK 235 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHH
Confidence 44444444455777888888877776654333 344 5677999999888888888999999999986432 24
Q ss_pred HHHHHHHHHhcccc
Q 048211 85 IESELKIILDQSNR 98 (665)
Q Consensus 85 ~~~~l~~~~~~~~~ 98 (665)
+.++|...+++...
T Consensus 236 flk~L~~aieE~d~ 249 (288)
T KOG1586|consen 236 FLKDLLDAIEEQDI 249 (288)
T ss_pred HHHHHHHHHhhhhH
Confidence 55666655555433
No 295
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.71 E-value=45 Score=37.82 Aligned_cols=66 Identities=11% Similarity=0.006 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.-+....|.+.||+++.+.+.|++.+..|-+.||.++=--+-.-++...-+.-++|+....+....
T Consensus 392 ~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 392 RFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 348889999999999999999999999999999988755555566667778888888877766554
No 296
>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins.
Probab=53.50 E-value=9 Score=29.18 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=23.6
Q ss_pred cccccccccccccCCcCCCCCCCccccchHHHHhh
Q 048211 162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQA 196 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a 196 (665)
-..|..|-+++....-.+-.-+...|||.+|+...
T Consensus 16 L~~C~~C~k~L~~~~DiymYrGd~aFCS~ECR~~q 50 (58)
T PF04570_consen 16 LSFCYLCKKKLDPGKDIYMYRGDKAFCSEECRSQQ 50 (58)
T ss_pred HHHHHccCCCCCCCCCeeeeccccccccHHHHHHH
Confidence 46799999987632222334456678999999753
No 297
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=53.35 E-value=5.8 Score=30.35 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=11.6
Q ss_pred cccccccCCCCCCcc
Q 048211 132 RGITSQYDIPEGSLV 146 (665)
Q Consensus 132 R~lvAtrdi~~GevI 146 (665)
+.+||++||++|++|
T Consensus 2 ~vvVA~~di~~G~~i 16 (63)
T PF08666_consen 2 RVVVAARDIPAGTVI 16 (63)
T ss_dssp SEEEESSTB-TT-BE
T ss_pred cEEEEeCccCCCCEE
Confidence 468999999999998
No 298
>PRK01343 zinc-binding protein; Provisional
Probab=53.02 E-value=10 Score=28.69 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=16.9
Q ss_pred ccccccccccccCCcCCCCCCCccccchHHHHhhh
Q 048211 163 THCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAG 197 (665)
Q Consensus 163 ~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~ 197 (665)
..|-.|.++... .+.-|||+.|+..+.
T Consensus 10 ~~CP~C~k~~~~--------~~rPFCS~RC~~iDL 36 (57)
T PRK01343 10 RPCPECGKPSTR--------EAYPFCSERCRDIDL 36 (57)
T ss_pred CcCCCCCCcCcC--------CCCcccCHHHhhhhH
Confidence 446666554321 235789999998764
No 299
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=52.89 E-value=54 Score=32.66 Aligned_cols=35 Identities=23% Similarity=0.039 Sum_probs=24.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 048211 58 SLENHDDAVHDLTIAKNRESSLAGKKQIESELKIIL 93 (665)
Q Consensus 58 ~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 93 (665)
..++...|+..+++|+.++|+-+-++. .+++++.+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~GVK~~-i~~l~~~l 224 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCGVKKD-IERLERRL 224 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCChHHH-HHHHHHHH
Confidence 345678999999999999988654433 34444443
No 300
>PRK04841 transcriptional regulator MalT; Provisional
Probab=52.55 E-value=57 Score=39.55 Aligned_cols=67 Identities=19% Similarity=0.084 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-Y----AKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.....+...++.++...|++++|...+..+++..+. . .-++..+|.++...|++++|...+++++..
T Consensus 449 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~ 520 (903)
T PRK04841 449 TLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM 520 (903)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346667778999999999999999999999986443 2 245677899999999999999999998875
No 301
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=51.45 E-value=50 Score=33.47 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCChHHHHHHHHHHHH
Q 048211 31 CLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR-ESSLAGKKQIESELKI 91 (665)
Q Consensus 31 al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~~~~~~~~l~~ 91 (665)
|.+.|.+|+.+.|++...|..+|......|+.-+|+=.|-+++-. .|...+...+..-+++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999888888865 6666566666655555
No 302
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.23 E-value=8.8 Score=43.51 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=26.6
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccc
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHS 148 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~ 148 (665)
.+|++..++.+|-||.|..||++|+.|+.
T Consensus 120 A~vevF~Te~KG~GLRA~~dI~~g~FI~E 148 (729)
T KOG4442|consen 120 AKVEVFLTEKKGCGLRAEEDIPKGQFILE 148 (729)
T ss_pred CceeEEEecCcccceeeccccCCCcEEee
Confidence 48889999999999999999999999873
No 303
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=49.97 E-value=8.9 Score=29.10 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=15.0
Q ss_pred cccccccccccCCcCCCCCCCccccchHHHHhhhc
Q 048211 164 HCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGG 198 (665)
Q Consensus 164 ~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~ 198 (665)
.|-.|.++.... ..=.+--|||+.|+..+.+
T Consensus 4 ~CP~C~k~~~~~----~~n~~rPFCS~RCk~iDLg 34 (57)
T PF03884_consen 4 KCPICGKPVEWS----PENPFRPFCSERCKLIDLG 34 (57)
T ss_dssp E-TTT--EEE-S----SSSS--SSSSHHHHHHHHS
T ss_pred cCCCCCCeeccc----CCCCcCCcccHhhcccCHH
Confidence 466666654320 1113345899999987754
No 304
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=49.52 E-value=88 Score=26.12 Aligned_cols=50 Identities=18% Similarity=0.004 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY--AKAWYRRGKVNVSLEN 61 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~--~ka~~r~a~~~~~l~~ 61 (665)
..+....|.+++..|+|++|++-+..+++.+++| ..+--++-.++..+|.
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3567789999999999999999999999999887 2333333334444444
No 305
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=48.95 E-value=43 Score=26.78 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 048211 61 NHDDAVHDLTIAKNRESSLAGKKQIESELKIIL 93 (665)
Q Consensus 61 ~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 93 (665)
.|..|++.|..+++.+|+...+..+...+...+
T Consensus 30 ~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl 62 (77)
T smart00745 30 LYKKAIEYLLEGIKVESDSKRREAVKAKAAEYL 62 (77)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 344555555666667776554444444444443
No 306
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.16 E-value=71 Score=32.47 Aligned_cols=71 Identities=7% Similarity=-0.106 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCChHHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR-ESSLAGK 82 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~~ 82 (665)
..+..-.|.|.+.+++|++|..-.+.||.-++++|..+.+.--+-..+|.-.++.+.+-.-++. +|+..-+
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 3456678889999999999999999999999999999999999999999998888877766654 6665433
No 307
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.38 E-value=52 Score=33.33 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=44.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 24 KRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 24 ~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
+....++|+..+.+++++.+.. .||+-.+-++++++++|++..+.|...+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4457899999999999998653 58999999999999999999998887765
No 308
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=44.61 E-value=14 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=25.1
Q ss_pred cccccccccccCCcCCCCCCCccccchHHHHhh
Q 048211 164 HCHYCLNELPADAIPCTSCSIPLYCSRRCRGQA 196 (665)
Q Consensus 164 ~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a 196 (665)
.|++|-+++....++|..|.-.-.| .+|....
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC-~~C~~~~ 33 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLC-ESCEAKG 33 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccch-HHhhCcC
Confidence 5899998776667799999877779 6887654
No 309
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=44.13 E-value=37 Score=28.87 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.8
Q ss_pred CEEEEEEeecCCCCCceeeecCCC
Q 048211 398 RTLMIRTTEFVPSGYPLELSYGPQ 421 (665)
Q Consensus 398 ~~~~vrA~r~I~~GeeI~isY~~~ 421 (665)
+.+.+.-.++|..|++++++|.+.
T Consensus 75 ktVTLTL~~~V~~Gq~VTVsYt~p 98 (101)
T TIGR02059 75 TTITLTLAQVVEDGDEVTLSYTKN 98 (101)
T ss_pred cEEEEEecccccCCCEEEEEeeCC
Confidence 389999999999999999999875
No 310
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=43.35 E-value=1.2e+02 Score=33.74 Aligned_cols=61 Identities=10% Similarity=0.043 Sum_probs=51.7
Q ss_pred HHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChHHH
Q 048211 22 LQKRDH-LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-HDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 22 ~~~l~~-~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~~ 82 (665)
|.+... |.+--.-+.++|...|++|..|.-.|.=.+..+. .+.|.+.|.++++.+|+++..
T Consensus 114 f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 114 FCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred HHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 444433 7888888999999999999999999988888777 889999999999999998753
No 311
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=43.10 E-value=78 Score=36.17 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+.-.|-.+.....++.|.+.+.+|++.+|++.++|.-.-+-+...|.-++-.+.|.++..-+|..+
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 334455666777889999999999999999988888888888888888888888888888888865
No 312
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=43.10 E-value=15 Score=27.81 Aligned_cols=44 Identities=20% Similarity=0.492 Sum_probs=30.2
Q ss_pred ccccccccccccc----CCcCCCCCC-CccccchHHHHhhhccccccCCcccc
Q 048211 162 ETHCHYCLNELPA----DAIPCTSCS-IPLYCSRRCRGQAGGQVFKNCPMERN 209 (665)
Q Consensus 162 ~~~C~~C~~~~~~----~~~~C~~C~-~~~YCS~~C~~~a~~~~H~~eC~~~~ 209 (665)
.++|..|...+.. ..++||+|+ ...|=...|++.+ +.|.|+..+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g----~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLG----NPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHcC----CceECCCcC
Confidence 5789999888732 357999999 4444447888754 566776544
No 313
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=43.01 E-value=13 Score=23.13 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=17.6
Q ss_pred ccccccccccccCCcCCCCCCCc
Q 048211 163 THCHYCLNELPADAIPCTSCSIP 185 (665)
Q Consensus 163 ~~C~~C~~~~~~~~~~C~~C~~~ 185 (665)
..|.+|...++.+..-|+.|+..
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCcccccChhhCCC
Confidence 57888988777677788888753
No 314
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.69 E-value=51 Score=27.60 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQI 41 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~ 41 (665)
....+..|.|..+..+|++++|+..++.|+++
T Consensus 39 ~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 39 GLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999987
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=41.59 E-value=1.3e+02 Score=29.73 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=54.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 20 SVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 20 ~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
..+++-+..+++|.+...-++-+|.+.....-.=+.+.-.|+|+.|...++.+-.++|+...
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 36778889999999999999999998877666677888899999999999999999998753
No 316
>PLN03218 maturation of RBCL 1; Provisional
Probab=41.30 E-value=2.3e+02 Score=35.24 Aligned_cols=68 Identities=9% Similarity=-0.013 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQIC-PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN--RESSL 79 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~-p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~--l~p~~ 79 (665)
...|.....+|.+.|++++|++-+...++.. +-+...|.-+..+|.+.|++++|.+.|+...+ +.|+.
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 4567777778888888888888888887765 33566777788888888888888888887654 35654
No 317
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=41.00 E-value=15 Score=27.63 Aligned_cols=24 Identities=33% Similarity=0.818 Sum_probs=17.9
Q ss_pred cccccccccccccCCcCCCCCCCccccchHHHH
Q 048211 162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRG 194 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~ 194 (665)
..||--|.++++.+ -.+||++|+.
T Consensus 8 H~HC~VCg~aIp~d---------e~~CSe~C~e 31 (64)
T COG4068 8 HRHCVVCGKAIPPD---------EQVCSEECGE 31 (64)
T ss_pred CccccccCCcCCCc---------cchHHHHHHH
Confidence 56788888887653 2559999985
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=40.66 E-value=50 Score=23.63 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048211 16 VNRASVLQKRDHLVECLRDCNRAVQI 41 (665)
Q Consensus 16 ~NRa~~~~~l~~~~~al~d~~~al~~ 41 (665)
.+.|.+|..+|+++.|.+-.+.+++-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 319
>PLN03218 maturation of RBCL 1; Provisional
Probab=40.50 E-value=2.2e+02 Score=35.33 Aligned_cols=63 Identities=8% Similarity=-0.071 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQI----CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~----~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
...|...-.+|.+.|++++|.+-+....+. .|+ ...|.-+-.++.+.|++++|.+.|+.+.+.
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 445666666666666666666666666542 233 345555556666666666666666666554
No 320
>PF14949 ARF7EP_C: ARF7 effector protein C-terminus
Probab=40.29 E-value=15 Score=31.53 Aligned_cols=28 Identities=32% Similarity=0.952 Sum_probs=21.9
Q ss_pred ccccccccccccccccCCcCCCCCCCccccchHHHH
Q 048211 159 HCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRG 194 (665)
Q Consensus 159 ~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~ 194 (665)
+....-|.+|| .||+.|+-.. |+.+|+.
T Consensus 64 DCL~~~C~GC~-------~PC~~C~S~K-CG~~CR~ 91 (103)
T PF14949_consen 64 DCLDEDCPGCH-------YPCPKCGSRK-CGPECRC 91 (103)
T ss_pred cccCCCCCCcc-------ccCCCCCCCc-cChhhCc
Confidence 44556677774 6899999988 9999974
No 321
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=38.49 E-value=87 Score=24.91 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 048211 62 HDDAVHDLTIAKNRESSLAGKKQIESELKIIL 93 (665)
Q Consensus 62 ~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 93 (665)
|.+|++.|..+++.+|+...+..+...+...+
T Consensus 29 Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl 60 (75)
T cd02656 29 YKEALDYLLQALKAEKEPKLRKLLRKKVKEYL 60 (75)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 34444445555556666554444554444443
No 322
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.05 E-value=1.7e+02 Score=28.06 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 28 LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 28 ~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+..++..++.++..| ++..|.+.+.++..+|+.++|.+..+++..+-|.++
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 3445566666666665 678889999999999999999999999999999544
No 323
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=37.91 E-value=53 Score=34.65 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENH 62 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~ 62 (665)
.+-+|+.|++++..+.++++|++|...+...+|++.....+..........+
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 5668999999999999999999999999999999876555544444444333
No 324
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=37.78 E-value=1.9e+02 Score=27.49 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
..++..+|.-|.+.|+++.|++-+.++.+..-+ -...+++.-.+....+++......+.++-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555554443211 133444444555555555555554444433
No 325
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=36.40 E-value=1.1e+02 Score=36.25 Aligned_cols=64 Identities=22% Similarity=0.018 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQIC-PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~-p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
..--|..++++|++++|+ .|-.++..- +++--.+--.-.||..++.+++|+..|+++....|+.
T Consensus 46 ~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSE 110 (932)
T ss_pred HHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcH
Confidence 334678899999999999 677776664 4455566667889999999999999999999999994
No 326
>PLN03077 Protein ECB2; Provisional
Probab=36.22 E-value=1.2e+02 Score=36.54 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
...|.....+|.+.|++++|.+-++.. ...|+ +..|..+-.++..-++.+.|....+++++++|++..
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 457888999999999999999888764 34555 556666666777788999999999999999998754
No 327
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=34.53 E-value=1.5e+02 Score=23.94 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 048211 29 VECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELKIIL 93 (665)
Q Consensus 29 ~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 93 (665)
..|+..+.+|++.|.. |.--..+..|..|++.|..+++.+++...+..++.++..-+
T Consensus 4 ~~A~~l~~~Ave~d~~--------~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl 60 (75)
T cd02677 4 EQAAELIRLALEKEEE--------GDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYL 60 (75)
T ss_pred HHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4556666666655311 11112222344444455555556666554444554444433
No 328
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=34.28 E-value=1.6e+02 Score=31.65 Aligned_cols=70 Identities=19% Similarity=0.076 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..+.++.-+++..+... ...|..+...++++.|+...+-.-.+.++..-|+...+-..++.+-+.+|.-.
T Consensus 228 ~rAvLLtAkA~s~ldad-p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 228 SRAVLLTAKAMSLLDAD-PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 35566666666666555 78999999999999999999999999999999999999999999999988753
No 329
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.26 E-value=17 Score=36.30 Aligned_cols=27 Identities=30% Similarity=0.672 Sum_probs=21.7
Q ss_pred cccccccccccccc----------CCcCCCCCCCccc
Q 048211 161 RETHCHYCLNELPA----------DAIPCTSCSIPLY 187 (665)
Q Consensus 161 ~~~~C~~C~~~~~~----------~~~~C~~C~~~~Y 187 (665)
.+.+|.+|+-.++. ..+.||.|+...|
T Consensus 196 ~g~~C~GC~m~l~~~~~~~V~~~d~iv~CP~CgRILy 232 (239)
T COG1579 196 EGRVCGGCHMKLPSQTLSKVRKKDEIVFCPYCGRILY 232 (239)
T ss_pred cCCcccCCeeeecHHHHHHHhcCCCCccCCccchHHH
Confidence 57899999988763 4678999998766
No 330
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.09 E-value=23 Score=27.36 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=9.9
Q ss_pred ccccchHHHHhhh
Q 048211 185 PLYCSRRCRGQAG 197 (665)
Q Consensus 185 ~~YCS~~C~~~a~ 197 (665)
.-|||+.|+.-+.
T Consensus 26 rPFCSkRCklIDL 38 (65)
T COG3024 26 RPFCSKRCKLIDL 38 (65)
T ss_pred CcchhHhhhhcch
Confidence 3579999997653
No 331
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=33.25 E-value=1.5e+02 Score=20.03 Aligned_cols=30 Identities=7% Similarity=-0.082 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 048211 15 YVNRASVLQKRDHLVECLRD--CNRAVQICPS 44 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d--~~~al~~~p~ 44 (665)
+.-.|..+...|+|++|++- +.-+..+++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34468899999999999999 4477777664
No 332
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=32.96 E-value=1.4e+02 Score=33.64 Aligned_cols=70 Identities=17% Similarity=0.021 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECL-RDCNRAVQICPSYAKAWYRR------GKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al-~d~~~al~~~p~~~ka~~r~------a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++.|.+.+....|....++ .++..+....|++.....-+ ++-+..+|+-.++...+.++..+.|.+.
T Consensus 100 ~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 100 NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 6678899998888887755554 55555999999987665555 8888889999999999999999988874
No 333
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.27 E-value=18 Score=38.30 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=18.0
Q ss_pred CCcccccccCCCCCCcccc
Q 048211 130 KGRGITSQYDIPEGSLVHS 148 (665)
Q Consensus 130 ~GR~lvAtrdi~~GevIl~ 148 (665)
.|+|+||+.+|++|+.+|.
T Consensus 40 ~G~g~vAtesIkkgE~Lf~ 58 (466)
T KOG1338|consen 40 AGAGIVATESIKKGESLFA 58 (466)
T ss_pred cccceeeehhhcCCceEEE
Confidence 5999999999999999987
No 334
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=32.01 E-value=1.9e+02 Score=26.53 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHD 63 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~ 63 (665)
....+|...+..|+|.-|++-++.++..||++..+..-++.++.++|.-.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 35678888999999999999999999999999999999999998887643
No 335
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=31.97 E-value=18 Score=28.11 Aligned_cols=33 Identities=15% Similarity=0.494 Sum_probs=21.3
Q ss_pred ccccccccccccC---CcCCCCCCCccccchHHHHh
Q 048211 163 THCHYCLNELPAD---AIPCTSCSIPLYCSRRCRGQ 195 (665)
Q Consensus 163 ~~C~~C~~~~~~~---~~~C~~C~~~~YCS~~C~~~ 195 (665)
.+|++|...+.+. .+.=..=...+|||..|.+.
T Consensus 4 ~~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k~ 39 (66)
T COG2075 4 RVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEKL 39 (66)
T ss_pred eEecCcCCccCCCceEEEEecCCeEEEEechhHHHH
Confidence 5788998877531 11112334568999999983
No 336
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=31.80 E-value=2e+02 Score=23.15 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 048211 62 HDDAVHDLTIAKNRESSLAGKKQIESELKIILD 94 (665)
Q Consensus 62 ~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~ 94 (665)
|..|++.|..+++.+++...+..++..+..-++
T Consensus 29 Y~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~ 61 (75)
T cd02684 29 YCSALQYFVPALHYETDAQRKEALRQKVLQYVS 61 (75)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 444455555556666666555555555544443
No 337
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.46 E-value=2.3e+02 Score=29.27 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=35.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 35 CNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 35 ~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
..+.+.-||++..+-+..|..+...|++++|.+.+-..++.+-+
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 33444558999999999999999999999999998888876543
No 338
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=31.09 E-value=22 Score=36.41 Aligned_cols=32 Identities=28% Similarity=0.717 Sum_probs=24.8
Q ss_pred ccccccccccccccCCcCCCCCCCccccchHHHHh
Q 048211 161 RETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQ 195 (665)
Q Consensus 161 ~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~ 195 (665)
....|+-|-++. .-+.||+|.. .|||-.|.+.
T Consensus 6 ~~~~C~ic~vq~--~~YtCPRCn~-~YCsl~CYr~ 37 (383)
T KOG4317|consen 6 SFLACGICGVQK--REYTCPRCNL-LYCSLKCYRN 37 (383)
T ss_pred ceeecccccccc--ccccCCCCCc-cceeeeeecC
Confidence 345788888764 2489999998 5699999874
No 339
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=30.99 E-value=15 Score=24.76 Aligned_cols=24 Identities=25% Similarity=0.701 Sum_probs=12.9
Q ss_pred ccccccccccc--------CCcCCCCCCCccc
Q 048211 164 HCHYCLNELPA--------DAIPCTSCSIPLY 187 (665)
Q Consensus 164 ~C~~C~~~~~~--------~~~~C~~C~~~~Y 187 (665)
+|..|..++.. .-..|+.|+++.|
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~IhY 33 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGFIHY 33 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTEEE-
T ss_pred ccccccChhhhhcCCCCCccceECCCCCCEEe
Confidence 68888877532 1235999999876
No 340
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=30.46 E-value=30 Score=21.29 Aligned_cols=20 Identities=30% Similarity=0.884 Sum_probs=11.6
Q ss_pred ccccccccc----cCCcCCCCCCC
Q 048211 165 CHYCLNELP----ADAIPCTSCSI 184 (665)
Q Consensus 165 C~~C~~~~~----~~~~~C~~C~~ 184 (665)
|..|...+. ...++||+|++
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 445644432 23578999974
No 341
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=29.99 E-value=2.5e+02 Score=28.77 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 13 TLYVNRASVLQK-RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 13 ~~~~NRa~~~~~-l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+|..-|..-++ .++.+.|..=++++++.-|..+..|..-..-+..+++.+.|...|++++..-|...
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 345545555455 45566677777777777777777777777777777777777777877777655544
No 342
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=29.91 E-value=1.9e+02 Score=25.24 Aligned_cols=62 Identities=11% Similarity=0.024 Sum_probs=47.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCh
Q 048211 18 RASVLQKRDHLVECLRDCNRAVQICPSYAK---AWYRRGKVNVSLEN-----------HDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~k---a~~r~a~~~~~l~~-----------~~~A~~~~~~al~l~p~~ 79 (665)
+|..+++.|++-+|++-.+..+...++... .+.-.|..++.+.. .-.|++.|.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 688899999999999999999988766543 34445777766543 246778888888888876
No 343
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.42 E-value=91 Score=34.36 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVN 56 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~ 56 (665)
+.+|-+..|+..|+..+|.+-+.+|...=..+|..|.|+|.|.
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4455555555555555555555555555445555555555553
No 344
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.31 E-value=18 Score=26.09 Aligned_cols=10 Identities=60% Similarity=1.261 Sum_probs=8.6
Q ss_pred ccccchHHHH
Q 048211 185 PLYCSRRCRG 194 (665)
Q Consensus 185 ~~YCS~~C~~ 194 (665)
+.|||+.|+.
T Consensus 35 VKyCSeRCrr 44 (54)
T COG4338 35 VKYCSERCRR 44 (54)
T ss_pred HHHHHHHHHH
Confidence 6799999985
No 345
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.12 E-value=2.2e+02 Score=23.01 Aligned_cols=25 Identities=16% Similarity=0.023 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 50 YRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 50 ~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
...|.-.-..|+|++|++.|..+++
T Consensus 10 v~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 10 VTQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHhhHhhhHHHHHHHHHHHHH
Confidence 3444445566788888888777766
No 346
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=28.76 E-value=37 Score=24.34 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=25.8
Q ss_pred cccccccccccCCcCCCCCCCccccchHHHHhhh
Q 048211 164 HCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAG 197 (665)
Q Consensus 164 ~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~ 197 (665)
.|+.|.+++....+.|..|.-.-.| .+|.....
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC-~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLC-SSCYAKGK 34 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCH-HHHHCcCc
Confidence 5999999776666789999977778 68876553
No 347
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.75 E-value=4.9e+02 Score=24.37 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
..+.....+-.+.++.+++..-+...--+.|..+..-.--|..+...|+|.+|+..|+....-.|....
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 344555556666666666665555555556777777666777777777777777777776555555543
No 348
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=28.36 E-value=27 Score=26.57 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=13.1
Q ss_pred cccccccCCCCCCccc
Q 048211 132 RGITSQYDIPEGSLVH 147 (665)
Q Consensus 132 R~lvAtrdi~~GevIl 147 (665)
+-++|+++|++|++|-
T Consensus 2 ~v~va~~~i~~G~~i~ 17 (64)
T smart00858 2 RVVVAARDLPAGEVIT 17 (64)
T ss_pred CEEEEeCccCCCCCcc
Confidence 4578899999999885
No 349
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.34 E-value=1.3e+02 Score=33.23 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----HHHHHHcCCHHHHHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRR-----GKVNVSLENHDDAVHD 68 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~-----a~~~~~l~~~~~A~~~ 68 (665)
.+...+|+|.|.+-+.+|+.-.|+...++.|++ |+-.++|--+ |.++..|.+..+|...
T Consensus 506 Nm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~H 569 (696)
T KOG2471|consen 506 NMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAH 569 (696)
T ss_pred HHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhc
Confidence 468899999999999999999999999999987 4555555444 4555566666555543
No 350
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.95 E-value=3e+02 Score=27.63 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHHHHHhcC
Q 048211 607 VIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQREALKL 663 (665)
Q Consensus 607 ~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~~~~~~~ 663 (665)
...+....||..++..|+.+.| ..+.++.... .=+.+..++.+.+..|.+|+.++
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~y--r~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSY--RREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHh
Confidence 5566677899999999999999 9999993333 55677888889999999887654
No 351
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=27.87 E-value=36 Score=25.22 Aligned_cols=31 Identities=23% Similarity=0.616 Sum_probs=17.4
Q ss_pred cccccccccccC--------CcCCCCCCCccccchHHHHhh
Q 048211 164 HCHYCLNELPAD--------AIPCTSCSIPLYCSRRCRGQA 196 (665)
Q Consensus 164 ~C~~C~~~~~~~--------~~~C~~C~~~~YCS~~C~~~a 196 (665)
.|..|.++++.. .+.|+.|+..+ | -+|---.
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~F-C-~dCD~fi 39 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHF-C-IDCDVFI 39 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B---HHHHHTT
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCcc-c-cCcChhh
Confidence 488898887642 47899999855 8 6776443
No 352
>PRK10941 hypothetical protein; Provisional
Probab=27.31 E-value=1.3e+02 Score=30.87 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKV 55 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~ 55 (665)
.-+.-||.+|.++|.+..|+.|++.-++.-|+.|.+-.-+.+.
T Consensus 216 ~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 216 YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3467799999999999999999999999999998876555443
No 353
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.14 E-value=41 Score=29.27 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=20.7
Q ss_pred cccccccccccccc---cCCcCCCCCCCcc
Q 048211 160 CRETHCHYCLNELP---ADAIPCTSCSIPL 186 (665)
Q Consensus 160 ~~~~~C~~C~~~~~---~~~~~C~~C~~~~ 186 (665)
....+|..|.++.- ..++.||.|+..+
T Consensus 7 GtKR~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred CCcccCCCCcchhccCCCCCccCCCCCCcc
Confidence 35788999998753 3678899998866
No 354
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=26.96 E-value=2.6e+02 Score=30.17 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCh
Q 048211 13 TLYVNRASVLQK---RDHLVECLRDCNRAVQIC-PSYAKAWYRRGKVNVSL---------ENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 13 ~~~~NRa~~~~~---l~~~~~al~d~~~al~~~-p~~~ka~~r~a~~~~~l---------~~~~~A~~~~~~al~l~p~~ 79 (665)
.+-...|.|+.+ .|+.++|++-+..++.-+ +..++.|--.|.+|..+ ...+.|++.|.++.+++|+.
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 344567778888 899999999999966554 66788888888877554 23568888999999998764
No 355
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=26.83 E-value=2.4e+02 Score=33.51 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=47.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 23 QKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 23 ~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+..++|+.|+.++++.++--|+-+-|..-.|..+.++|++++|...++..-..-+++.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~ 77 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD 77 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch
Confidence 4567899999999999999898776666789999999999999977776555555543
No 356
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.67 E-value=1.2e+02 Score=33.43 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSY--AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~--~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.++.--|.-..++.+...|-.-...||..-|.. .|+|. ..-.+|++++.+...|++.++..|.|-
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI---elElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI---ELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH---HHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 334434444445555555555555555554432 22222 233455555556556666655555553
No 357
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.56 E-value=1.1e+02 Score=33.19 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=41.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 19 ASVLQKRDHLVECLRDCNRAVQIC---------PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 19 a~~~~~l~~~~~al~d~~~al~~~---------p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
.-++.-+|+|..|++-.+ -++++ +-+...+|..|-||+-|++|.+|+..|...+.
T Consensus 129 lRvh~LLGDY~~Alk~l~-~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 129 LRVHCLLGDYYQALKVLE-NIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHhccCHHHHHHHhh-ccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556899999887544 23332 22456789999999999999999999998764
No 358
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=26.47 E-value=3.3e+02 Score=21.63 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 048211 62 HDDAVHDLTIAKNRESSLAGKKQIESELKIIL 93 (665)
Q Consensus 62 ~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 93 (665)
|..|++.|..+++.+|+...+..+...+...+
T Consensus 29 Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl 60 (75)
T cd02678 29 YQHALEYFMHALKYEKNPKSKESIRAKCTEYL 60 (75)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 34444455555666676554444444444433
No 359
>PLN03077 Protein ECB2; Provisional
Probab=25.87 E-value=2.6e+02 Score=33.74 Aligned_cols=60 Identities=8% Similarity=-0.056 Sum_probs=47.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCChHHH
Q 048211 19 ASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN--RESSLAGK 82 (665)
Q Consensus 19 a~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~--l~p~~~~~ 82 (665)
-..|.+.|++++|.+-++.. +.+...|..+..+|...|+.++|++.|++..+ +.|+..+.
T Consensus 531 i~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 36788888988888877765 45677888899999999999999999998776 46765443
No 360
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=25.77 E-value=61 Score=24.73 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=30.0
Q ss_pred cccccccccccccc----CCcCCCCCCCc-cccchHHHHhhhccccccCCcccc
Q 048211 161 RETHCHYCLNELPA----DAIPCTSCSIP-LYCSRRCRGQAGGQVFKNCPMERN 209 (665)
Q Consensus 161 ~~~~C~~C~~~~~~----~~~~C~~C~~~-~YCS~~C~~~a~~~~H~~eC~~~~ 209 (665)
....|..|...+.. ..+.|++|+.. .|=...|++.+ +.|.|+..+
T Consensus 6 ~~~~CtSCg~~i~~~~~~~~F~CPnCG~~~I~RC~~CRk~~----~~Y~CP~CG 55 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKAVKFLCPNCGEVIIYRCEKCRKQS----NPYTCPKCG 55 (59)
T ss_pred cCccccCCCCcccCCCccCEeeCCCCCCeeEeechhHHhcC----CceECCCCC
Confidence 35678889887653 34689999875 33337898764 566776544
No 361
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.41 E-value=4.5e+02 Score=26.31 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 048211 50 YRRGKVNVSLENHDDAVHDLTIAK 73 (665)
Q Consensus 50 ~r~a~~~~~l~~~~~A~~~~~~al 73 (665)
..+|.-++.+|+|+.|++.|+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555543
No 362
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=25.37 E-value=4e+02 Score=23.41 Aligned_cols=88 Identities=23% Similarity=0.304 Sum_probs=56.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHhhH--HHHHHHHHHHHHhHHHHHHHh-hhHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 048211 543 SSYATVDEAWIYIRRLQDAIISKEIS--RAVLLDASRFLGLLRSILHAY-NKSIAEILEKLYGHNHIVIGYELVKLSSIQ 619 (665)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~ 619 (665)
.+....+.+...+++..+++..+++. ...+..+...+..+...|.+- +..+...+..+|. +...+|....
T Consensus 21 Li~~Lyd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~-------y~~~~L~~A~ 93 (122)
T PF02561_consen 21 LILMLYDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYD-------YMIRQLVQAN 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHH-------HHHHHHHHHH
Confidence 34556677888888888887776653 345667777777777777763 4677788888776 5556666655
Q ss_pred hhcCChhhHhHHHHHHHHHHHh
Q 048211 620 LSLDDHNAVDTISRLAAIFLHY 641 (665)
Q Consensus 620 l~~~~~~~a~~~~~A~~il~~~ 641 (665)
+. ++ ...+..+..++.-.
T Consensus 94 ~~-~d---~~~l~~v~~~l~~l 111 (122)
T PF02561_consen 94 LK-KD---PERLDEVIRILEEL 111 (122)
T ss_dssp HT-T----HHHHHHHHHHHHHH
T ss_pred Hh-CC---HHHHHHHHHHHHHH
Confidence 54 22 24455555555433
No 363
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=24.62 E-value=34 Score=27.46 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=10.8
Q ss_pred ccccccccccccc-CCcCCCCCCCc
Q 048211 162 ETHCHYCLNELPA-DAIPCTSCSIP 185 (665)
Q Consensus 162 ~~~C~~C~~~~~~-~~~~C~~C~~~ 185 (665)
...|+.||+.... ...-||+|+-.
T Consensus 9 vlrC~aCf~~t~~~~k~FCp~CGn~ 33 (73)
T PF08772_consen 9 VLRCHACFKITKDMTKQFCPKCGNA 33 (73)
T ss_dssp EEE-SSS--EES-SS--S-SSS--S
T ss_pred eEEccccccCcCCCCceeCcccCCC
Confidence 4579999997653 45678888763
No 364
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=24.41 E-value=39 Score=31.99 Aligned_cols=26 Identities=31% Similarity=0.654 Sum_probs=20.8
Q ss_pred ccccccccccccccCCcCCCCCCCcc
Q 048211 161 RETHCHYCLNELPADAIPCTSCSIPL 186 (665)
Q Consensus 161 ~~~~C~~C~~~~~~~~~~C~~C~~~~ 186 (665)
...+|++|++..+.+.-.|+.|+-..
T Consensus 138 w~~rC~GC~~~f~~~~~~Cp~CG~~~ 163 (177)
T COG1439 138 WRLRCHGCKRIFPEPKDFCPICGSPL 163 (177)
T ss_pred eeEEEecCceecCCCCCcCCCCCCce
Confidence 35789999999876677899998753
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=24.39 E-value=2.9e+02 Score=29.64 Aligned_cols=69 Identities=9% Similarity=-0.034 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCC---------------CHHHHHHHHHHHHHcCC
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQI--------------CPS---------------YAKAWYRRGKVNVSLEN 61 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~--------------~p~---------------~~ka~~r~a~~~~~l~~ 61 (665)
....+...|.++.++|+++.|.+-+++||-. ++. ...+++|-.+.+.+-|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 3455677999999999999999999988721 111 13678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCh
Q 048211 62 HDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 62 ~~~A~~~~~~al~l~p~~ 79 (665)
++-|.+..+-.++++|.+
T Consensus 119 ~rTAlE~~KlLlsLdp~~ 136 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDE 136 (360)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 999999999999999993
No 366
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=24.24 E-value=2.9e+02 Score=32.48 Aligned_cols=68 Identities=6% Similarity=-0.101 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCChHHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN--RESSLAGK 82 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~--l~p~~~~~ 82 (665)
..+|.....+|.+.|++++|.+-++.. .+.+...|.-+..+|.+.|++++|++.|+...+ +.|+..+.
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 345666778999999999999888754 345778899999999999999999999998866 46765543
No 367
>TIGR03586 PseI pseudaminic acid synthase.
Probab=23.98 E-value=32 Score=36.35 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.2
Q ss_pred CCcccccccCCCCCCcccccC
Q 048211 130 KGRGITSQYDIPEGSLVHSEE 150 (665)
Q Consensus 130 ~GR~lvAtrdi~~GevIl~e~ 150 (665)
.+|.|||.+||++|++|-.+.
T Consensus 274 ~rrsl~a~~di~~G~~it~~~ 294 (327)
T TIGR03586 274 FRRSLYVVKDIKKGETFTEEN 294 (327)
T ss_pred eeEEEEEccCcCCCCEecHHh
Confidence 479999999999999986554
No 368
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.90 E-value=3.2e+02 Score=34.00 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=55.2
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHH
Q 048211 596 ILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQ 657 (665)
Q Consensus 596 ~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~ 657 (665)
.-..+.|+.+...|.-+..++.++--.+++..| .....+++|+...+|++|+-+.+-..-|+
T Consensus 1086 ~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1086 KNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred HHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHH
Confidence 446888999999999999999988888999999 99999999999999999999987666554
No 369
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.80 E-value=2.9e+02 Score=26.91 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-YAKA--WYRRGKVNVSLENHDDAVHDLTI 71 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-~~ka--~~r~a~~~~~l~~~~~A~~~~~~ 71 (665)
..+-.-.|.++...+++++|+.....++....+ +-|+ -.|+|.+...+|.+++|+..+..
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 344455678888999999999999999876422 3444 47889999999999999987763
No 370
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.41 E-value=1.6e+02 Score=30.98 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=48.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCh
Q 048211 19 ASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR-ESSL 79 (665)
Q Consensus 19 a~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l-~p~~ 79 (665)
++.+...|++-+|-...++.|+--|.+.=++-+--.++..+|+...-...+++.+-. +++-
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dl 171 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADL 171 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCC
Confidence 456677777777777788888887888888888888999999999888888887654 6664
No 371
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.09 E-value=2.7e+02 Score=22.54 Aligned_cols=10 Identities=20% Similarity=0.022 Sum_probs=3.7
Q ss_pred cCCHHHHHHH
Q 048211 59 LENHDDAVHD 68 (665)
Q Consensus 59 l~~~~~A~~~ 68 (665)
-|+|++|+..
T Consensus 19 ~g~y~eA~~~ 28 (76)
T cd02681 19 EGRYSEAVFY 28 (76)
T ss_pred ccCHHHHHHH
Confidence 3333333333
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=22.94 E-value=2.3e+02 Score=27.62 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=30.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHH
Q 048211 22 LQKRDHLVECLRDCNRAVQIC-PS---YAKAWYRRGKVNVSLENHDDAV 66 (665)
Q Consensus 22 ~~~l~~~~~al~d~~~al~~~-p~---~~ka~~r~a~~~~~l~~~~~A~ 66 (665)
|+-..+-++|+.-+.+||++. ++ ++..+.-+|..++++|+++.|-
T Consensus 150 yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 150 YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 333445677777777777774 22 4677777777777777777663
No 373
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.89 E-value=50 Score=21.87 Aligned_cols=21 Identities=33% Similarity=0.746 Sum_probs=13.2
Q ss_pred cccccccccc---cCCcCCCCCCC
Q 048211 164 HCHYCLNELP---ADAIPCTSCSI 184 (665)
Q Consensus 164 ~C~~C~~~~~---~~~~~C~~C~~ 184 (665)
.|..|..... .+.++|+.|+.
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCCcCCCeeEcCCCCcEECCcCCC
Confidence 3666766543 25789998886
No 374
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.87 E-value=4.1e+02 Score=21.45 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQ 40 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~ 40 (665)
+.-+.-+|.-.=+.|+|++|+..+..|++
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44455555555555555555555555544
No 375
>PRK05685 fliS flagellar protein FliS; Validated
Probab=22.20 E-value=1.5e+02 Score=26.64 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHh
Q 048211 609 GYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHY 641 (665)
Q Consensus 609 g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~ 641 (665)
+...++.++..+..++.+++ ..+.||.+|+.-.
T Consensus 35 ai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL 68 (132)
T PRK05685 35 ALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGL 68 (132)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888 8999999888543
No 376
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=21.65 E-value=38 Score=37.64 Aligned_cols=59 Identities=31% Similarity=0.579 Sum_probs=36.6
Q ss_pred ccccCCCCCCcc---ccc---------CCceecccccccccccccccccccc---CCcCCCCCCCccccchHHHHh
Q 048211 135 TSQYDIPEGSLV---HSE---------EPYAVTISKHCRETHCHYCLNELPA---DAIPCTSCSIPLYCSRRCRGQ 195 (665)
Q Consensus 135 vAtrdi~~GevI---l~e---------~P~~~~~~~~~~~~~C~~C~~~~~~---~~~~C~~C~~~~YCS~~C~~~ 195 (665)
-+..||..|++| +.. .|-+.-+..-...+.|++|..-+.. ...+|.+|+.-+ -+.|..+
T Consensus 117 tsasdI~eG~lvEvvl~~~at~ed~~i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNy--HKRCa~k 190 (888)
T KOG4236|consen 117 TSASDITEGDLVEVVLSASATFEDFQIRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNY--HKRCAFK 190 (888)
T ss_pred ccccccccCceEEEEeeccccccceeeecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcH--hhhhhhc
Confidence 355688888875 222 2333333344567899999876543 567999999843 2455443
No 377
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=21.47 E-value=2.3e+02 Score=18.00 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 048211 31 CLRDCNRAVQICPSYAKAWYRRGKVNVSL 59 (665)
Q Consensus 31 al~d~~~al~~~p~~~ka~~r~a~~~~~l 59 (665)
.++-+..+|..+|.+.-+|.-|--++..+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 45667888999999999987776665543
No 378
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.47 E-value=40 Score=35.65 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=18.0
Q ss_pred CCcccccccCCCCCCcccccC
Q 048211 130 KGRGITSQYDIPEGSLVHSEE 150 (665)
Q Consensus 130 ~GR~lvAtrdi~~GevIl~e~ 150 (665)
..|.|||.+||++|++|-.+.
T Consensus 276 ~rrsl~a~~di~~G~~lt~~~ 296 (329)
T TIGR03569 276 ARKSLVAAKDIKKGEIFTEDN 296 (329)
T ss_pred cceEEEEccCcCCCCEecHHh
Confidence 379999999999999986554
No 379
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=21.34 E-value=2.4e+02 Score=28.91 Aligned_cols=68 Identities=6% Similarity=0.018 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCChHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL-ENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l-~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+|..-.....+.+..++|-.-+.+|++.++.....|.+-|...+.. ++.+.|...|+.+++.-|.+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~ 71 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH
Confidence 3444444555555688888889999865566778999999998885 5555599999999999888753
No 380
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=21.21 E-value=1.9e+02 Score=22.41 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=10.0
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 048211 55 VNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 55 ~~~~l~~~~~A~~~~~~al~ 74 (665)
-.-..|+|++|++.|..++.
T Consensus 14 ~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 14 EADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 33445555555555555443
No 381
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=20.96 E-value=1.9e+02 Score=23.37 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQI 41 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~ 41 (665)
.|..|+.||--+-+.|++++|+..+..++++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666654
No 382
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=20.85 E-value=2.6e+02 Score=26.23 Aligned_cols=46 Identities=13% Similarity=0.020 Sum_probs=37.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 048211 18 RASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHD 63 (665)
Q Consensus 18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~ 63 (665)
-+..+...|+|.+|++-++.+.+-.|..+-+---++.|+..+|+.+
T Consensus 50 ~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 50 DGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 4667888999999999999987777877644444889999999863
No 383
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=20.78 E-value=2.2e+02 Score=17.42 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 048211 27 HLVECLRDCNRAVQICPSYAKAWYRRGK 54 (665)
Q Consensus 27 ~~~~al~d~~~al~~~p~~~ka~~r~a~ 54 (665)
+++.|-.-+++++...|..+..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4556666666677666666666655443
No 384
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=20.55 E-value=1.6e+02 Score=30.75 Aligned_cols=60 Identities=10% Similarity=-0.012 Sum_probs=49.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 23 QKRDHLVECLRDCNRAVQICPSYAKAWYR-RGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 23 ~~l~~~~~al~d~~~al~~~p~~~ka~~r-~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.+-|.+--.-|..+++..|.+++.|.- -+.=+.-.++++.|...|.++++++|.++.+
T Consensus 118 ~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 118 IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 34556777778889999999999999866 3455667789999999999999999998743
No 385
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=20.52 E-value=51 Score=29.32 Aligned_cols=35 Identities=11% Similarity=0.325 Sum_probs=23.4
Q ss_pred ccccccccccccc---CCcCCCCCCCccccchHHHHhh
Q 048211 162 ETHCHYCLNELPA---DAIPCTSCSIPLYCSRRCRGQA 196 (665)
Q Consensus 162 ~~~C~~C~~~~~~---~~~~C~~C~~~~YCS~~C~~~a 196 (665)
...|++|..++.+ ..+.=...+..+|||..|.+..
T Consensus 4 ~e~CsFcG~kIyPG~G~~fVR~DGkvf~FcssKC~k~f 41 (131)
T PRK14891 4 TRTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKNY 41 (131)
T ss_pred eeeecCcCCcccCCCCcEEEecCCCEEEEecHHHHHHH
Confidence 3469999887653 1122245677899999997653
No 386
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=20.06 E-value=4.9e+02 Score=26.55 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=43.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----C---CCC-------HHHHHHHHHHHHHcCCHHHH
Q 048211 4 NDKDRNLVATLYVNRASVLQKRD-HLVECLRDCNRAVQI----C---PSY-------AKAWYRRGKVNVSLENHDDA 65 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l~-~~~~al~d~~~al~~----~---p~~-------~ka~~r~a~~~~~l~~~~~A 65 (665)
+|.....++..++|-+...++.+ +|+.|+...++|+++ . ... .+.+.-++.++...+.++..
T Consensus 27 ~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 27 DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 44455678899999999999999 999999999998877 2 112 23344456677666666433
Done!