Query 048211
Match_columns 665
No_of_seqs 339 out of 2858
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qww_A SET and MYND domain-con 100.0 1.3E-60 4.3E-65 519.5 28.6 416 120-657 7-431 (433)
2 3qwp_A SET and MYND domain-con 100.0 3.6E-60 1.2E-64 517.1 22.0 420 120-663 5-426 (429)
3 3n71_A Histone lysine methyltr 100.0 1.7E-59 5.8E-64 518.4 27.7 419 120-662 7-447 (490)
4 3rq4_A Histone-lysine N-methyl 99.4 2E-14 6.8E-19 141.9 2.8 69 372-452 168-238 (247)
5 3s8p_A Histone-lysine N-methyl 99.3 9.5E-13 3.2E-17 131.1 4.0 62 377-450 203-265 (273)
6 1n3j_A A612L, histone H3 lysin 99.2 1.7E-12 5.7E-17 114.9 2.0 53 373-427 58-112 (119)
7 2hr2_A Hypothetical protein; a 99.2 1.1E-11 3.7E-16 114.4 6.1 72 11-82 56-138 (159)
8 3rkv_A Putative peptidylprolyl 99.2 1.8E-10 6.2E-15 106.9 12.0 87 8-94 59-146 (162)
9 4gco_A Protein STI-1; structur 99.1 4.3E-10 1.5E-14 100.3 12.0 70 11-80 12-81 (126)
10 2w5y_A Histone-lysine N-methyl 99.0 1.7E-10 5.8E-15 110.2 5.7 55 379-444 124-182 (192)
11 2odd_A Protein CBFA2T1; MYND z 99.0 1.1E-10 3.7E-15 90.7 2.0 57 138-207 2-58 (64)
12 3gyz_A Chaperone protein IPGC; 98.9 7.1E-09 2.4E-13 95.6 11.5 70 11-80 35-104 (151)
13 4gco_A Protein STI-1; structur 98.9 1.4E-08 4.8E-13 90.4 12.7 72 11-82 46-117 (126)
14 3upv_A Heat shock protein STI1 98.9 1.1E-08 3.9E-13 90.1 11.7 65 12-76 38-102 (126)
15 3f9x_A Histone-lysine N-methyl 98.8 1.4E-09 4.8E-14 102.0 4.2 54 380-435 108-165 (166)
16 3ope_A Probable histone-lysine 98.8 3.9E-09 1.3E-13 103.6 6.0 44 379-422 146-193 (222)
17 3ooi_A Histone-lysine N-methyl 98.8 3.4E-09 1.2E-13 104.7 4.8 54 379-444 165-222 (232)
18 4gcn_A Protein STI-1; structur 98.8 2.4E-08 8.2E-13 88.9 9.6 70 10-79 6-75 (127)
19 2vgx_A Chaperone SYCD; alterna 98.8 3.2E-08 1.1E-12 90.6 10.8 68 12-79 21-88 (148)
20 4gcn_A Protein STI-1; structur 98.7 2E-08 6.7E-13 89.4 8.5 65 11-75 41-105 (127)
21 3ma5_A Tetratricopeptide repea 98.7 3.2E-08 1.1E-12 84.0 9.1 70 11-80 6-75 (100)
22 3sz7_A HSC70 cochaperone (SGT) 98.7 5.8E-08 2E-12 89.9 11.0 71 11-81 44-114 (164)
23 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 4.7E-08 1.6E-12 107.1 11.9 75 9-83 314-388 (457)
24 2xcb_A PCRH, regulatory protei 98.7 4.4E-08 1.5E-12 88.6 9.8 70 11-80 17-86 (142)
25 3k9i_A BH0479 protein; putativ 98.7 9.2E-08 3.1E-12 83.3 11.4 82 8-89 23-104 (117)
26 3gyz_A Chaperone protein IPGC; 98.7 1.4E-07 4.7E-12 86.9 12.0 75 11-85 69-143 (151)
27 1ihg_A Cyclophilin 40; ppiase 98.7 9E-08 3.1E-12 101.8 12.1 83 9-91 270-352 (370)
28 4ga2_A E3 SUMO-protein ligase 98.7 1.5E-07 5E-12 86.3 11.9 73 9-81 28-100 (150)
29 1p5q_A FKBP52, FK506-binding p 98.7 1.3E-07 4.4E-12 99.2 12.7 74 9-82 193-266 (336)
30 2l6j_A TPR repeat-containing p 98.6 3E-07 1E-11 78.3 12.7 69 11-79 3-71 (111)
31 2fbn_A 70 kDa peptidylprolyl i 98.6 1.7E-07 5.8E-12 89.7 12.4 81 11-91 87-167 (198)
32 3h6l_A Histone-lysine N-methyl 98.6 2.1E-08 7.2E-13 101.3 5.6 43 379-421 190-236 (278)
33 1zu2_A Mitochondrial import re 98.6 6.3E-08 2.1E-12 89.1 8.2 74 11-84 35-129 (158)
34 1na3_A Designed protein CTPR2; 98.6 4.8E-07 1.6E-11 74.0 12.9 75 8-82 5-79 (91)
35 1ml9_A Histone H3 methyltransf 98.6 1.6E-08 5.6E-13 103.9 4.5 64 379-444 220-292 (302)
36 3upv_A Heat shock protein STI1 98.6 3.8E-07 1.3E-11 80.1 12.8 71 11-81 3-73 (126)
37 3hna_A Histone-lysine N-methyl 98.6 7.4E-09 2.5E-13 105.3 1.6 56 379-444 216-279 (287)
38 4ga2_A E3 SUMO-protein ligase 98.6 1.9E-07 6.6E-12 85.5 9.8 78 11-88 64-142 (150)
39 3bo5_A Histone-lysine N-methyl 98.6 1.2E-08 4.1E-13 104.0 1.4 44 379-422 205-253 (290)
40 2xev_A YBGF; tetratricopeptide 98.5 8.2E-07 2.8E-11 77.8 13.1 83 10-92 37-122 (129)
41 2dba_A Smooth muscle cell asso 98.5 7.5E-07 2.6E-11 79.7 12.3 72 11-82 64-135 (148)
42 2if4_A ATFKBP42; FKBP-like, al 98.5 1E-07 3.5E-12 100.0 7.4 74 13-86 231-304 (338)
43 2hr2_A Hypothetical protein; a 98.5 3.4E-07 1.2E-11 84.3 9.9 71 11-81 10-99 (159)
44 3q49_B STIP1 homology and U bo 98.5 4.2E-07 1.4E-11 80.7 10.3 70 11-80 8-77 (137)
45 2kc7_A BFR218_protein; tetratr 98.5 6.6E-07 2.3E-11 74.8 11.0 68 15-82 3-71 (99)
46 1mvh_A Cryptic LOCI regulator 98.5 7.1E-08 2.4E-12 98.7 5.5 44 379-422 213-264 (299)
47 2f69_A Histone-lysine N-methyl 98.5 5.5E-08 1.9E-12 97.3 4.4 44 379-422 186-234 (261)
48 3sz7_A HSC70 cochaperone (SGT) 98.5 1.4E-06 4.9E-11 80.4 13.6 75 7-81 6-80 (164)
49 3vtx_A MAMA; tetratricopeptide 98.5 3.5E-07 1.2E-11 85.9 9.3 68 12-79 107-174 (184)
50 2r3a_A Histone-lysine N-methyl 98.5 1.1E-07 3.6E-12 97.3 6.0 43 379-421 215-265 (300)
51 3qxy_A N-lysine methyltransfer 98.5 5.9E-08 2E-12 105.5 4.3 63 372-442 215-277 (449)
52 3smt_A Histone-lysine N-methyl 98.5 1.3E-07 4.4E-12 103.9 6.7 91 326-443 238-329 (497)
53 1hxi_A PEX5, peroxisome target 98.5 3.5E-07 1.2E-11 80.5 8.3 69 13-81 18-86 (121)
54 3vtx_A MAMA; tetratricopeptide 98.5 1.2E-06 4.1E-11 82.2 12.3 72 11-82 4-75 (184)
55 1hxi_A PEX5, peroxisome target 98.5 1.5E-06 5.2E-11 76.3 12.1 70 11-80 50-119 (121)
56 1elw_A TPR1-domain of HOP; HOP 98.4 1.9E-06 6.5E-11 73.4 12.1 69 12-80 4-72 (118)
57 1h3i_A Histone H3 lysine 4 spe 98.4 6.4E-08 2.2E-12 99.4 3.1 42 380-421 241-287 (293)
58 2kat_A Uncharacterized protein 98.4 7.2E-07 2.5E-11 77.1 9.4 69 11-79 18-86 (115)
59 2vgx_A Chaperone SYCD; alterna 98.4 1.7E-06 5.7E-11 79.0 12.3 84 11-94 54-137 (148)
60 3urz_A Uncharacterized protein 98.4 1.6E-06 5.6E-11 83.8 12.3 72 11-82 53-124 (208)
61 2qpw_A PR domain zinc finger p 98.4 1.9E-07 6.5E-12 85.2 5.0 43 380-422 100-145 (149)
62 2xcb_A PCRH, regulatory protei 98.4 2.4E-06 8.3E-11 76.9 12.3 84 11-94 51-134 (142)
63 3q49_B STIP1 homology and U bo 98.4 3.3E-06 1.1E-10 74.8 12.1 68 11-78 42-109 (137)
64 2lni_A Stress-induced-phosphop 98.3 3.1E-06 1.1E-10 74.0 11.3 76 6-81 10-85 (133)
65 2vyi_A SGTA protein; chaperone 98.3 6.6E-06 2.3E-10 71.3 12.7 72 9-80 9-80 (131)
66 3ieg_A DNAJ homolog subfamily 98.3 4.6E-06 1.6E-10 86.0 13.2 91 4-94 264-354 (359)
67 1a17_A Serine/threonine protei 98.3 6.5E-06 2.2E-10 75.0 12.7 70 12-81 47-116 (166)
68 4gyw_A UDP-N-acetylglucosamine 98.3 3.1E-06 1.1E-10 97.7 12.8 75 7-81 4-78 (723)
69 3rkv_A Putative peptidylprolyl 98.3 3.5E-06 1.2E-10 77.5 10.4 73 9-81 8-98 (162)
70 2h6f_A Protein farnesyltransfe 98.2 3.1E-06 1.1E-10 90.2 11.0 72 10-81 95-167 (382)
71 2c2l_A CHIP, carboxy terminus 98.2 1.1E-06 3.9E-11 89.4 7.1 69 11-79 37-105 (281)
72 2pl2_A Hypothetical conserved 98.2 4E-06 1.4E-10 81.6 10.7 70 12-81 5-74 (217)
73 1elr_A TPR2A-domain of HOP; HO 98.2 5.9E-06 2E-10 71.7 10.1 66 13-78 39-111 (131)
74 1wao_1 Serine/threonine protei 98.2 4.5E-06 1.5E-10 91.8 11.5 79 11-89 39-117 (477)
75 2lni_A Stress-induced-phosphop 98.2 1E-05 3.5E-10 70.6 11.6 72 11-82 49-120 (133)
76 2kck_A TPR repeat; tetratricop 98.2 7.3E-06 2.5E-10 69.0 9.9 69 12-80 6-76 (112)
77 2e2e_A Formate-dependent nitri 98.2 9.9E-06 3.4E-10 75.4 11.6 67 13-79 45-114 (177)
78 2kck_A TPR repeat; tetratricop 98.2 5.3E-06 1.8E-10 69.9 8.8 69 11-79 39-110 (112)
79 2pl2_A Hypothetical conserved 98.2 7.8E-06 2.7E-10 79.4 11.2 49 11-59 38-86 (217)
80 4gyw_A UDP-N-acetylglucosamine 98.2 7.3E-06 2.5E-10 94.6 12.5 71 11-81 42-112 (723)
81 1hh8_A P67PHOX, NCF-2, neutrop 98.2 7.7E-06 2.6E-10 78.3 10.5 68 12-79 37-104 (213)
82 1elw_A TPR1-domain of HOP; HOP 98.1 2.4E-05 8.3E-10 66.3 12.5 73 11-83 37-109 (118)
83 4i17_A Hypothetical protein; T 98.1 1E-05 3.5E-10 78.6 11.1 70 12-81 7-77 (228)
84 2h6f_A Protein farnesyltransfe 98.1 1.3E-05 4.4E-10 85.4 12.4 73 11-83 130-203 (382)
85 3bee_A Putative YFRE protein; 98.1 2E-05 6.9E-10 65.8 11.0 82 11-92 5-89 (93)
86 2xev_A YBGF; tetratricopeptide 98.1 1.1E-05 3.9E-10 70.3 9.8 68 13-80 3-73 (129)
87 1na0_A Designed protein CTPR3; 98.1 3.5E-05 1.2E-09 65.9 12.6 70 11-80 8-77 (125)
88 4i17_A Hypothetical protein; T 98.1 5.2E-06 1.8E-10 80.8 7.2 80 11-90 116-224 (228)
89 2c2l_A CHIP, carboxy terminus 98.0 2.3E-05 7.7E-10 79.6 12.0 71 11-81 3-73 (281)
90 2jw6_A Deformed epidermal auto 98.0 2E-06 6.9E-11 63.5 3.0 44 159-206 6-49 (52)
91 2vyi_A SGTA protein; chaperone 98.0 5.6E-05 1.9E-09 65.2 13.0 72 11-82 45-116 (131)
92 2dj8_A Protein CBFA2T1; zinc f 98.0 2.3E-06 8E-11 65.1 3.1 43 161-207 14-56 (60)
93 1a17_A Serine/threonine protei 98.0 3.7E-05 1.3E-09 69.9 12.0 72 10-81 11-82 (166)
94 2h21_A Ribulose-1,5 bisphospha 98.0 3.5E-06 1.2E-10 91.6 5.6 87 327-443 160-257 (440)
95 3urz_A Uncharacterized protein 98.0 2.3E-05 7.9E-10 75.5 10.6 71 12-82 4-90 (208)
96 1p5q_A FKBP52, FK506-binding p 98.0 3.1E-05 1.1E-09 80.8 12.4 72 10-81 145-231 (336)
97 2y4t_A DNAJ homolog subfamily 98.0 3.3E-05 1.1E-09 82.9 12.9 90 4-93 287-376 (450)
98 3uq3_A Heat shock protein STI1 98.0 2.7E-05 9.4E-10 76.2 10.9 73 9-81 136-208 (258)
99 3mkr_A Coatomer subunit epsilo 98.0 4E-05 1.4E-09 78.3 12.0 75 11-85 199-274 (291)
100 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 3.5E-05 1.2E-09 84.1 11.9 72 10-81 266-352 (457)
101 1xnf_A Lipoprotein NLPI; TPR, 97.9 5.5E-05 1.9E-09 75.0 12.4 75 7-81 38-112 (275)
102 1na0_A Designed protein CTPR3; 97.9 0.0001 3.5E-09 62.9 12.5 71 12-82 43-113 (125)
103 1hh8_A P67PHOX, NCF-2, neutrop 97.9 3E-05 1E-09 74.1 9.8 70 11-80 70-155 (213)
104 2dba_A Smooth muscle cell asso 97.9 7E-05 2.4E-09 66.5 11.5 73 9-81 25-100 (148)
105 2v5f_A Prolyl 4-hydroxylase su 97.9 0.0001 3.5E-09 62.6 11.4 82 11-92 4-92 (104)
106 2fbn_A 70 kDa peptidylprolyl i 97.9 9E-05 3.1E-09 70.4 12.2 72 10-81 36-123 (198)
107 2yhc_A BAMD, UPF0169 lipoprote 97.9 4.9E-05 1.7E-09 74.1 10.3 70 12-81 4-76 (225)
108 1elr_A TPR2A-domain of HOP; HO 97.9 3.3E-05 1.1E-09 66.8 8.0 69 11-79 3-71 (131)
109 2pzi_A Probable serine/threoni 97.8 3.4E-05 1.2E-09 88.6 10.2 72 11-82 432-503 (681)
110 3qky_A Outer membrane assembly 97.8 8.2E-05 2.8E-09 73.9 11.3 73 10-82 13-88 (261)
111 3u4t_A TPR repeat-containing p 97.8 2.6E-05 9E-10 77.4 7.7 67 14-80 39-108 (272)
112 2e2e_A Formate-dependent nitri 97.8 0.00011 3.8E-09 68.1 11.2 83 11-93 77-162 (177)
113 3uq3_A Heat shock protein STI1 97.8 0.00015 5E-09 70.9 12.7 73 11-83 172-250 (258)
114 2od1_A Protein CBFA2T1; zinc f 97.8 7.9E-06 2.7E-10 62.1 2.5 45 159-207 10-54 (60)
115 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.0001 3.5E-09 71.7 11.3 54 9-62 38-94 (225)
116 3qky_A Outer membrane assembly 97.8 7.1E-05 2.4E-09 74.4 10.2 78 15-92 151-241 (261)
117 2d8q_A BLU protein, zinc finge 97.8 7.2E-06 2.5E-10 64.2 1.8 42 162-207 15-56 (70)
118 1xnf_A Lipoprotein NLPI; TPR, 97.8 8.3E-05 2.8E-09 73.7 10.0 71 11-81 76-146 (275)
119 4abn_A Tetratricopeptide repea 97.8 7.2E-05 2.5E-09 82.0 10.3 71 11-81 212-293 (474)
120 2fo7_A Synthetic consensus TPR 97.7 0.00012 4.1E-09 63.2 9.8 69 12-80 35-103 (136)
121 1fch_A Peroxisomal targeting s 97.7 0.00012 3.9E-09 76.2 11.1 78 4-81 56-133 (368)
122 1pc2_A Mitochondria fission pr 97.7 0.00013 4.3E-09 66.3 9.6 84 11-94 31-119 (152)
123 3hym_B Cell division cycle pro 97.7 9.3E-05 3.2E-09 75.3 9.0 72 11-82 235-306 (330)
124 1ihg_A Cyclophilin 40; ppiase 97.7 0.00011 3.9E-09 77.7 9.8 71 11-81 222-308 (370)
125 4eqf_A PEX5-related protein; a 97.7 0.00026 8.8E-09 73.7 12.5 71 11-81 212-282 (365)
126 2vq2_A PILW, putative fimbrial 97.7 0.00034 1.2E-08 66.6 12.3 73 9-81 5-77 (225)
127 4eqf_A PEX5-related protein; a 97.6 0.0002 6.9E-09 74.5 11.4 72 10-81 63-134 (365)
128 3fp2_A TPR repeat-containing p 97.6 0.00011 3.8E-09 80.7 9.7 74 9-82 22-95 (537)
129 2q7f_A YRRB protein; TPR, prot 97.6 0.00012 4.1E-09 70.9 8.9 70 12-81 125-194 (243)
130 4abn_A Tetratricopeptide repea 97.6 8E-05 2.7E-09 81.6 8.4 69 10-78 100-169 (474)
131 2vq2_A PILW, putative fimbrial 97.6 0.00033 1.1E-08 66.7 11.9 71 11-81 112-183 (225)
132 2gw1_A Mitochondrial precursor 97.6 0.00013 4.5E-09 79.3 10.2 68 12-79 39-106 (514)
133 2vsy_A XCC0866; transferase, g 97.6 0.00025 8.5E-09 79.3 12.5 67 13-79 24-90 (568)
134 2fo7_A Synthetic consensus TPR 97.6 0.00034 1.2E-08 60.2 10.8 68 13-80 2-69 (136)
135 1zu2_A Mitochondrial import re 97.6 4.1E-05 1.4E-09 70.2 4.8 58 23-80 13-80 (158)
136 3as5_A MAMA; tetratricopeptide 97.6 0.00047 1.6E-08 63.2 12.2 69 12-80 42-110 (186)
137 2l6j_A TPR repeat-containing p 97.6 1.4E-05 4.9E-10 67.5 1.6 61 11-71 37-103 (111)
138 2pzi_A Probable serine/threoni 97.6 7.6E-05 2.6E-09 85.7 8.0 71 11-82 466-536 (681)
139 1fch_A Peroxisomal targeting s 97.6 0.00043 1.5E-08 71.7 12.7 71 11-81 216-286 (368)
140 2ho1_A Type 4 fimbrial biogene 97.6 0.00037 1.3E-08 68.1 11.5 74 8-81 33-106 (252)
141 1w3b_A UDP-N-acetylglucosamine 97.6 0.00018 6.2E-09 75.7 9.8 69 12-80 33-101 (388)
142 3as5_A MAMA; tetratricopeptide 97.6 0.00063 2.1E-08 62.3 12.3 74 8-81 4-77 (186)
143 2r5s_A Uncharacterized protein 97.6 7.2E-05 2.5E-09 69.7 5.7 66 14-80 8-73 (176)
144 2vsy_A XCC0866; transferase, g 97.6 0.00028 9.6E-09 78.9 11.6 72 11-82 56-127 (568)
145 3ieg_A DNAJ homolog subfamily 97.6 0.0005 1.7E-08 70.5 12.7 70 12-81 3-72 (359)
146 2ho1_A Type 4 fimbrial biogene 97.6 0.00066 2.3E-08 66.3 13.0 70 11-80 140-209 (252)
147 3db5_A PR domain zinc finger p 97.5 6E-05 2.1E-09 68.8 4.8 44 379-422 97-143 (151)
148 1wao_1 Serine/threonine protei 97.5 6.6E-05 2.3E-09 82.4 6.0 71 11-81 5-75 (477)
149 2q7f_A YRRB protein; TPR, prot 97.5 0.00064 2.2E-08 65.7 12.5 70 10-79 21-90 (243)
150 3k9i_A BH0479 protein; putativ 97.5 5.9E-05 2E-09 65.1 4.2 58 24-81 2-62 (117)
151 2xpi_A Anaphase-promoting comp 97.5 0.00042 1.4E-08 77.2 12.1 72 11-82 515-586 (597)
152 2y4t_A DNAJ homolog subfamily 97.5 0.00062 2.1E-08 72.8 12.7 72 9-80 23-94 (450)
153 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00015 5.3E-09 75.6 7.6 71 11-81 178-265 (338)
154 1w3b_A UDP-N-acetylglucosamine 97.5 0.00052 1.8E-08 72.1 11.7 71 11-81 202-272 (388)
155 3qww_A SET and MYND domain-con 97.4 0.00056 1.9E-08 73.8 11.3 81 581-662 313-394 (433)
156 3cv0_A Peroxisome targeting si 97.4 0.0008 2.7E-08 68.1 11.9 70 11-80 171-240 (327)
157 3ep0_A PR domain zinc finger p 97.4 0.00011 3.8E-09 68.1 4.8 44 379-422 101-147 (170)
158 3fp2_A TPR repeat-containing p 97.4 0.00033 1.1E-08 76.8 9.1 69 11-80 58-126 (537)
159 1qqe_A Vesicular transport pro 97.4 0.0004 1.4E-08 70.5 9.0 71 11-81 157-234 (292)
160 4f3v_A ESX-1 secretion system 97.4 0.00065 2.2E-08 68.6 10.2 71 11-82 170-243 (282)
161 3qou_A Protein YBBN; thioredox 97.4 0.0003 1E-08 71.4 7.9 70 11-80 116-185 (287)
162 3cv0_A Peroxisome targeting si 97.4 0.00095 3.2E-08 67.5 11.7 75 7-81 16-90 (327)
163 3n71_A Histone lysine methyltr 97.4 0.00088 3E-08 73.4 12.0 83 579-662 322-405 (490)
164 3u3w_A Transcriptional activat 97.3 0.00037 1.3E-08 70.6 8.3 69 7-75 191-266 (293)
165 2gw1_A Mitochondrial precursor 97.3 0.00084 2.9E-08 72.9 11.6 75 12-86 412-489 (514)
166 1qqe_A Vesicular transport pro 97.3 0.00047 1.6E-08 70.0 8.5 70 11-80 116-192 (292)
167 3u4t_A TPR repeat-containing p 97.3 0.00039 1.3E-08 68.8 7.3 64 12-75 3-66 (272)
168 2r5s_A Uncharacterized protein 97.3 0.0005 1.7E-08 63.9 7.5 56 24-79 86-141 (176)
169 3mkr_A Coatomer subunit epsilo 97.2 0.0008 2.8E-08 68.4 9.5 57 25-81 179-235 (291)
170 3hym_B Cell division cycle pro 97.2 0.0014 4.9E-08 66.2 11.0 70 11-80 89-159 (330)
171 3edt_B KLC 2, kinesin light ch 97.2 0.001 3.4E-08 65.6 9.3 69 7-75 80-156 (283)
172 3qou_A Protein YBBN; thioredox 97.1 0.0017 5.7E-08 65.8 10.7 59 21-79 194-252 (287)
173 3qwp_A SET and MYND domain-con 97.1 0.0019 6.6E-08 69.6 10.9 86 7-92 324-422 (429)
174 1dce_A Protein (RAB geranylger 97.1 0.0017 5.8E-08 72.7 10.8 71 11-81 62-144 (567)
175 4g1t_A Interferon-induced prot 97.1 0.0012 4.3E-08 71.0 9.5 69 8-76 47-124 (472)
176 4g1t_A Interferon-induced prot 97.1 0.0026 8.7E-08 68.5 11.8 72 11-82 93-174 (472)
177 2kc7_A BFR218_protein; tetratr 97.1 0.00025 8.7E-09 58.7 3.0 60 12-79 34-94 (99)
178 2kat_A Uncharacterized protein 97.0 0.0015 5E-08 55.7 7.8 53 29-81 2-54 (115)
179 1dce_A Protein (RAB geranylger 97.0 0.0017 5.7E-08 72.7 10.2 72 11-82 106-180 (567)
180 3edt_B KLC 2, kinesin light ch 97.0 0.0012 4.1E-08 65.0 7.9 68 8-75 123-198 (283)
181 3ro3_A PINS homolog, G-protein 97.0 0.0016 5.4E-08 57.9 8.0 69 7-75 4-78 (164)
182 2qfc_A PLCR protein; TPR, HTH, 97.0 0.0033 1.1E-07 63.5 11.3 67 10-76 153-226 (293)
183 3dal_A PR domain zinc finger p 97.0 0.00047 1.6E-08 65.3 4.3 44 379-422 131-177 (196)
184 3ulq_A Response regulator aspa 97.0 0.0016 5.3E-08 68.5 8.8 66 10-75 222-293 (383)
185 2qfc_A PLCR protein; TPR, HTH, 97.0 0.001 3.6E-08 67.3 7.0 67 9-75 193-266 (293)
186 3q15_A PSP28, response regulat 96.9 0.0017 5.8E-08 68.2 8.6 66 10-75 220-290 (378)
187 3nf1_A KLC 1, kinesin light ch 96.9 0.0013 4.5E-08 65.9 7.4 71 8-78 191-310 (311)
188 1na3_A Designed protein CTPR2; 96.9 0.0024 8.2E-08 51.2 7.6 50 11-60 42-91 (91)
189 2ifu_A Gamma-SNAP; membrane fu 96.9 0.0022 7.4E-08 65.5 8.8 68 11-79 154-227 (307)
190 3ro3_A PINS homolog, G-protein 96.9 0.0016 5.4E-08 57.9 6.8 72 8-79 45-122 (164)
191 2ond_A Cleavage stimulation fa 96.8 0.0021 7.2E-08 65.5 8.2 67 13-79 100-167 (308)
192 3u3w_A Transcriptional activat 96.8 0.0018 6.2E-08 65.5 7.4 68 10-77 153-227 (293)
193 3dra_A Protein farnesyltransfe 96.8 0.0059 2E-07 62.5 10.9 60 23-82 43-105 (306)
194 2ond_A Cleavage stimulation fa 96.8 0.0035 1.2E-07 63.9 9.1 70 11-80 49-133 (308)
195 3gw4_A Uncharacterized protein 96.7 0.003 1E-07 59.1 7.8 66 10-75 24-95 (203)
196 2ifu_A Gamma-SNAP; membrane fu 96.7 0.0014 4.8E-08 66.9 5.9 71 7-78 71-147 (307)
197 3dra_A Protein farnesyltransfe 96.7 0.0054 1.8E-07 62.9 10.0 72 11-82 143-222 (306)
198 3nf1_A KLC 1, kinesin light ch 96.7 0.0029 1E-07 63.3 7.9 70 8-77 149-226 (311)
199 3gw4_A Uncharacterized protein 96.7 0.0029 1E-07 59.2 7.3 54 22-75 2-55 (203)
200 3dss_A Geranylgeranyl transfer 96.7 0.011 3.7E-07 61.2 12.0 73 11-83 107-182 (331)
201 4a1s_A PINS, partner of inscut 96.7 0.0025 8.5E-08 67.1 7.5 68 8-75 44-115 (411)
202 3ihx_A PR domain zinc finger p 96.7 0.00096 3.3E-08 60.7 3.5 43 380-422 97-142 (152)
203 2xpi_A Anaphase-promoting comp 96.6 0.0062 2.1E-07 67.6 10.2 65 15-79 342-406 (597)
204 3sf4_A G-protein-signaling mod 96.6 0.0032 1.1E-07 65.7 7.5 69 7-75 4-76 (406)
205 3ro2_A PINS homolog, G-protein 96.6 0.0038 1.3E-07 62.8 7.7 65 11-75 4-72 (338)
206 3sf4_A G-protein-signaling mod 96.6 0.0063 2.2E-07 63.4 9.6 76 4-79 39-120 (406)
207 3dss_A Geranylgeranyl transfer 96.5 0.0063 2.1E-07 62.9 8.9 73 11-83 143-230 (331)
208 4a1s_A PINS, partner of inscut 96.4 0.0087 3E-07 62.9 9.9 36 605-640 339-375 (411)
209 3q7a_A Farnesyltransferase alp 96.4 0.013 4.5E-07 60.8 11.0 75 9-83 51-126 (349)
210 3ray_A PR domain-containing pr 96.4 0.0021 7.1E-08 62.3 4.3 44 379-422 140-186 (237)
211 3ulq_A Response regulator aspa 96.4 0.0046 1.6E-07 64.9 7.4 66 10-75 141-213 (383)
212 3ly7_A Transcriptional activat 96.4 0.013 4.3E-07 61.2 10.3 70 11-81 276-345 (372)
213 1nzn_A CGI-135 protein, fissio 96.4 0.013 4.4E-07 51.2 8.6 84 10-93 33-121 (126)
214 1ouv_A Conserved hypothetical 96.3 0.016 5.4E-07 57.3 10.1 64 11-76 5-72 (273)
215 1ouv_A Conserved hypothetical 96.2 0.0089 3E-07 59.2 7.8 65 11-77 145-217 (273)
216 3q7a_A Farnesyltransferase alp 96.2 0.035 1.2E-06 57.7 12.3 75 11-85 87-164 (349)
217 3o48_A Mitochondria fission 1 96.2 0.039 1.3E-06 48.4 10.6 85 10-94 38-126 (134)
218 3ro2_A PINS homolog, G-protein 96.1 0.0092 3.1E-07 59.9 7.7 67 9-75 180-252 (338)
219 1y8m_A FIS1; mitochondria, unk 95.9 0.092 3.1E-06 46.6 11.8 85 10-94 37-125 (144)
220 3q15_A PSP28, response regulat 95.9 0.012 4.1E-07 61.6 7.4 67 9-75 138-211 (378)
221 3ma5_A Tetratricopeptide repea 95.9 0.018 6E-07 47.8 7.0 41 41-81 2-42 (100)
222 1klx_A Cysteine rich protein B 95.8 0.047 1.6E-06 48.3 10.1 62 12-75 57-126 (138)
223 1n3j_A A612L, histone H3 lysin 95.4 0.0051 1.7E-07 53.5 2.0 35 120-155 4-38 (119)
224 2ooe_A Cleavage stimulation fa 95.2 0.038 1.3E-06 60.8 8.7 70 11-80 271-355 (530)
225 3ffl_A Anaphase-promoting comp 95.2 0.074 2.5E-06 48.5 9.0 65 7-71 58-147 (167)
226 1hz4_A MALT regulatory protein 95.1 0.043 1.5E-06 56.9 8.4 69 10-78 91-167 (373)
227 3rjv_A Putative SEL1 repeat pr 95.1 0.047 1.6E-06 52.1 7.8 63 12-77 50-120 (212)
228 3rjv_A Putative SEL1 repeat pr 94.9 0.063 2.2E-06 51.2 8.1 62 11-75 17-82 (212)
229 3u64_A Protein TP_0956; tetrat 94.8 0.091 3.1E-06 52.7 9.1 68 11-78 198-272 (301)
230 3mv2_B Coatomer subunit epsilo 94.6 0.11 3.7E-06 53.0 9.3 65 14-78 102-168 (310)
231 2ooe_A Cleavage stimulation fa 94.5 0.071 2.4E-06 58.5 8.6 69 11-79 320-389 (530)
232 1hz4_A MALT regulatory protein 94.4 0.13 4.3E-06 53.2 9.8 67 9-75 132-203 (373)
233 2v5f_A Prolyl 4-hydroxylase su 94.2 0.13 4.6E-06 42.9 7.6 45 9-53 43-87 (104)
234 4f3v_A ESX-1 secretion system 94.0 0.064 2.2E-06 53.9 6.1 63 14-76 137-201 (282)
235 1pc2_A Mitochondria fission pr 93.8 0.15 5.2E-06 46.0 7.6 43 10-52 69-111 (152)
236 1xi4_A Clathrin heavy chain; a 93.8 0.12 4.1E-06 62.4 8.6 63 11-78 1104-1166(1630)
237 2xm6_A Protein corresponding t 93.6 0.3 1E-05 52.8 11.2 65 12-78 363-435 (490)
238 4b4t_Q 26S proteasome regulato 93.5 0.12 4E-06 54.6 7.5 68 9-76 132-205 (434)
239 3f9x_A Histone-lysine N-methyl 93.1 0.038 1.3E-06 50.9 2.4 34 121-154 31-64 (166)
240 3mv2_B Coatomer subunit epsilo 92.7 0.27 9.2E-06 50.0 8.3 69 13-86 215-293 (310)
241 3u64_A Protein TP_0956; tetrat 92.1 0.31 1E-05 48.9 7.5 53 27-79 178-237 (301)
242 3ooi_A Histone-lysine N-methyl 91.6 0.068 2.3E-06 52.2 2.2 31 120-150 92-122 (232)
243 2w5y_A Histone-lysine N-methyl 91.2 0.081 2.8E-06 50.0 2.2 34 120-153 52-85 (192)
244 3ope_A Probable histone-lysine 91.2 0.094 3.2E-06 50.8 2.7 34 121-154 75-108 (222)
245 1nzn_A CGI-135 protein, fissio 91.1 0.53 1.8E-05 40.9 7.1 44 10-53 72-115 (126)
246 1b89_A Protein (clathrin heavy 90.0 1 3.5E-05 48.0 9.6 62 14-80 150-241 (449)
247 1klx_A Cysteine rich protein B 90.0 0.71 2.4E-05 40.5 7.3 56 18-75 31-90 (138)
248 2ff4_A Probable regulatory pro 89.3 1.2 4.3E-05 46.7 9.8 71 10-80 169-246 (388)
249 2xm6_A Protein corresponding t 89.1 1.3 4.4E-05 47.7 10.0 64 11-76 38-109 (490)
250 3h6l_A Histone-lysine N-methyl 89.1 0.18 6.1E-06 50.5 2.8 33 120-152 117-149 (278)
251 4b4t_Q 26S proteasome regulato 89.0 0.73 2.5E-05 48.3 7.8 65 14-78 6-87 (434)
252 1b89_A Protein (clathrin heavy 88.4 0.22 7.4E-06 53.2 3.0 52 13-72 123-174 (449)
253 3hna_A Histone-lysine N-methyl 88.1 0.19 6.4E-06 50.6 2.2 34 120-153 147-180 (287)
254 4gns_B Protein CSD3, chitin bi 88.0 1.3 4.3E-05 50.7 9.1 55 19-73 344-398 (754)
255 3e4b_A ALGK; tetratricopeptide 87.8 1.1 3.8E-05 47.9 8.3 60 14-73 178-244 (452)
256 1y8m_A FIS1; mitochondria, unk 87.7 1.2 4.2E-05 39.4 6.9 40 11-50 76-115 (144)
257 3bee_A Putative YFRE protein; 87.3 1.4 4.6E-05 36.0 6.7 45 42-86 2-49 (93)
258 1xi4_A Clathrin heavy chain; a 86.9 1.4 4.9E-05 53.4 8.9 50 15-72 1198-1247(1630)
259 3o48_A Mitochondria fission 1 86.9 1.7 5.8E-05 37.9 7.2 43 10-52 76-118 (134)
260 1zbp_A Hypothetical protein VP 86.5 2.7 9.4E-05 41.3 9.4 64 20-83 5-68 (273)
261 3ly7_A Transcriptional activat 86.1 3 0.0001 43.2 10.0 69 11-79 195-310 (372)
262 3e4b_A ALGK; tetratricopeptide 85.0 1.2 4.3E-05 47.5 6.8 63 11-76 212-281 (452)
263 3bo5_A Histone-lysine N-methyl 84.7 0.36 1.2E-05 48.6 2.2 29 120-148 126-154 (290)
264 3smt_A Histone-lysine N-methyl 83.7 0.37 1.3E-05 52.6 1.8 30 121-150 94-123 (497)
265 1ml9_A Histone H3 methyltransf 83.2 0.47 1.6E-05 48.1 2.3 30 120-149 133-162 (302)
266 1mvh_A Cryptic LOCI regulator 82.7 0.49 1.7E-05 47.9 2.2 31 120-150 137-167 (299)
267 3qxy_A N-lysine methyltransfer 81.6 0.48 1.6E-05 51.0 1.7 30 120-149 38-68 (449)
268 4h7y_A Dual specificity protei 79.3 7.5 0.00026 34.7 8.3 60 21-80 69-128 (161)
269 2f69_A Histone-lysine N-methyl 77.6 1.1 3.9E-05 44.2 2.9 35 119-153 108-144 (261)
270 3ffl_A Anaphase-promoting comp 77.4 2.7 9.4E-05 38.2 5.1 57 19-75 27-92 (167)
271 3s8p_A Histone-lysine N-methyl 77.3 0.86 3E-05 45.1 1.9 22 127-148 143-164 (273)
272 1h3i_A Histone H3 lysine 4 spe 75.5 1.1 3.9E-05 45.0 2.2 34 120-153 163-198 (293)
273 1wvo_A Sialic acid synthase; a 73.4 1.4 4.9E-05 34.8 1.8 22 128-149 3-24 (79)
274 2qpw_A PR domain zinc finger p 73.3 1.6 5.4E-05 39.2 2.3 28 120-147 29-58 (149)
275 2r3a_A Histone-lysine N-methyl 72.7 1.5 5.1E-05 44.3 2.3 31 120-150 140-171 (300)
276 1ya0_A SMG-7 transcript varian 71.0 22 0.00074 38.5 11.1 79 14-92 154-233 (497)
277 3rq4_A Histone-lysine N-methyl 69.7 1.3 4.5E-05 43.2 1.1 22 127-148 115-136 (247)
278 2h21_A Ribulose-1,5 bisphospha 65.6 1.4 4.7E-05 47.2 0.2 21 130-150 32-52 (440)
279 2yqq_A Zinc finger HIT domain- 62.8 4.5 0.00015 29.5 2.5 30 162-195 12-41 (56)
280 1wy6_A Hypothetical protein ST 62.2 29 0.00098 30.5 7.8 61 15-75 93-154 (172)
281 3kae_A CDC27, possible protein 60.2 97 0.0033 28.2 11.1 69 15-83 65-151 (242)
282 4e6h_A MRNA 3'-END-processing 55.4 26 0.0009 39.4 8.5 50 31-80 328-378 (679)
283 1lv3_A Hypothetical protein YA 54.5 5.2 0.00018 30.4 1.6 32 163-198 10-41 (68)
284 2crb_A Nuclear receptor bindin 53.4 18 0.00061 29.1 4.6 27 46-72 15-41 (97)
285 2w2u_A Hypothetical P60 katani 52.6 62 0.0021 25.5 7.8 29 63-91 43-71 (83)
286 4a5x_A MITD1, MIT domain-conta 52.4 85 0.0029 24.8 8.9 24 69-92 46-69 (86)
287 3ep0_A PR domain zinc finger p 52.0 5.8 0.0002 36.3 1.9 34 118-154 25-60 (170)
288 2uy1_A Cleavage stimulation fa 50.6 30 0.001 37.2 7.7 52 29-81 196-247 (493)
289 2v6y_A AAA family ATPase, P60 48.7 81 0.0028 24.7 8.0 32 62-93 34-65 (83)
290 1wfd_A Hypothetical protein 15 48.3 1E+02 0.0036 24.6 8.9 30 62-91 38-67 (93)
291 1x4s_A Protein FON, zinc finge 47.7 7.4 0.00025 28.6 1.5 33 162-195 11-44 (59)
292 2ff4_A Probable regulatory pro 44.6 1.3E+02 0.0043 31.1 11.2 67 15-81 118-206 (388)
293 2crb_A Nuclear receptor bindin 41.8 52 0.0018 26.5 5.6 35 7-41 9-44 (97)
294 1z60_A TFIIH basal transcripti 40.9 16 0.00056 26.8 2.5 38 162-201 15-53 (59)
295 4e6h_A MRNA 3'-END-processing 40.3 96 0.0033 34.8 10.0 68 13-80 435-504 (679)
296 3dal_A PR domain zinc finger p 39.4 9.3 0.00032 35.7 1.2 34 118-154 56-91 (196)
297 3db5_A PR domain zinc finger p 37.9 12 0.0004 33.5 1.5 33 119-154 22-55 (151)
298 3mkq_B Coatomer subunit alpha; 36.7 73 0.0025 29.1 6.7 47 21-72 14-60 (177)
299 2v6x_A Vacuolar protein sortin 35.2 1.6E+02 0.0054 22.9 8.8 27 66-92 40-66 (85)
300 3na7_A HP0958; flagellar bioge 35.0 12 0.0004 36.7 1.2 28 161-188 197-234 (256)
301 2cpt_A SKD1 protein, vacuolar 34.2 1.9E+02 0.0066 24.2 8.6 15 64-78 43-57 (117)
302 4g26_A Pentatricopeptide repea 32.7 3.2E+02 0.011 29.0 12.4 71 11-81 104-177 (501)
303 1wfp_A Zinc finger (AN1-like) 31.5 25 0.00085 27.1 2.2 29 160-190 23-51 (74)
304 3ax2_A Mitochondrial import re 27.5 1.4E+02 0.0048 22.9 5.9 31 50-80 21-51 (73)
305 2con_A RUH-035 protein, NIN on 25.1 28 0.00097 27.2 1.5 24 162-185 15-39 (79)
306 1wfh_A Zinc finger (AN1-like) 24.8 32 0.0011 25.7 1.7 29 160-190 13-41 (64)
307 2dip_A Zinc finger SWIM domain 24.5 30 0.001 28.3 1.7 36 161-197 30-66 (98)
308 4g26_A Pentatricopeptide repea 24.2 4.3E+02 0.015 28.0 11.5 75 11-85 139-216 (501)
309 1wff_A Riken cDNA 2810002D23 p 23.5 52 0.0018 26.1 2.8 30 159-190 22-52 (85)
310 2fnf_X Putative RAS effector N 22.9 59 0.002 24.8 3.0 34 160-195 33-66 (72)
311 3g8r_A Probable spore coat pol 22.8 27 0.00092 35.7 1.3 21 129-149 277-297 (350)
312 1twf_L ABC10-alpha, DNA-direct 22.7 39 0.0013 25.8 1.9 26 162-187 28-57 (70)
313 4ayb_P DNA-directed RNA polyme 22.0 47 0.0016 23.0 1.9 23 164-186 5-33 (48)
314 1wg2_A Zinc finger (AN1-like) 21.1 41 0.0014 25.1 1.6 28 161-190 14-41 (64)
315 3mkq_A Coatomer beta'-subunit; 20.6 1.6E+02 0.0056 32.8 7.6 30 43-72 678-707 (814)
316 1wfl_A Zinc finger protein 216 20.4 33 0.0011 26.4 1.0 28 161-190 24-51 (74)
317 3o9x_A Uncharacterized HTH-typ 20.3 1.3E+02 0.0046 25.3 5.3 17 528-544 35-51 (133)
318 2l8e_A Polyhomeotic-like prote 20.3 53 0.0018 23.1 2.0 30 162-195 18-47 (49)
319 3iqc_A FLIS, flagellar protein 20.2 1.1E+02 0.0036 26.4 4.4 31 609-639 36-67 (131)
320 1vh6_A Flagellar protein FLIS; 20.0 99 0.0034 27.1 4.3 39 595-638 24-63 (145)
321 3txn_A 26S proteasome regulato 20.0 3E+02 0.01 28.4 8.7 65 9-73 136-208 (394)
322 3txn_A 26S proteasome regulato 20.0 2.5E+02 0.0086 29.0 8.1 62 14-75 101-168 (394)
No 1
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=100.00 E-value=1.3e-60 Score=519.51 Aligned_cols=416 Identities=20% Similarity=0.262 Sum_probs=303.6
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccccCCceeccccccccccccccccccccCCcCCCCCCCccccchHHHHhhhcc
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQ 199 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~ 199 (665)
..|++..++.+||||||+++|++||+|+.|+|+++++.......+|.+|+++.. .+.+|++|++++|||++||+.+|.
T Consensus 7 ~~ve~~~~~~~GRgl~A~r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~-~~~~C~~C~~~~yCs~~Cq~~~w~- 84 (433)
T 3qww_A 7 GGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKE-GLSKCGRCKQAFYCDVECQKEDWP- 84 (433)
T ss_dssp TTEEEEECTTSCEEEEESSCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCS-SCEECTTTSCCEESSHHHHHHHHH-
T ss_pred CcEEEeecCCCcCeEEECCCCCCCCEEEecCCceEEecccccCCcCCcccccCC-CCCCCCCCcceeecChhhhhhhhh-
Confidence 368899999999999999999999999999999999888888999999999754 589999999999999999999995
Q ss_pred ccccCCcccccccccchhhHHHHHHhhcCCCCCCCcccccccccccccCCCCCCCchHHHHHHHHHHHhHhhcCCCCCch
Q 048211 200 VFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVP 279 (665)
Q Consensus 200 ~H~~eC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~eC~~~~~~~~~p~~~~l~~R~l~~~~~~~~~~~~~~ 279 (665)
+|+.||.....+ ...| .++..+++++|++++... .+......
T Consensus 85 ~Hk~eC~~l~~~-----------------------------------~~~~--~p~~~~rl~~Ril~~~~~-~~~~~~~~ 126 (433)
T 3qww_A 85 LHKLECSSMVVL-----------------------------------GENW--NPSETVRLTARILAKQKI-HPERTPSE 126 (433)
T ss_dssp HHTTTHHHHHHS-----------------------------------STTC--CCCHHHHHHHHHHHHHHH-CCSCCGGG
T ss_pred HHHHHHHHHHHh-----------------------------------CccC--CCcHHHHHHHHHHHHhhh-ccccCchh
Confidence 889998664311 0001 234567899999887532 11111233
Q ss_pred hhhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHhhhcCCCCCCCCccHHHHHHHHhhhhcceeeccccccCCCCCCCCC
Q 048211 280 NLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHV 359 (665)
Q Consensus 280 ~~~~~~~L~~h~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~ 359 (665)
.+..+.+|++|.+.+.++.+..+......+..++.... . ..+...++.+++++.+|+|+|.+.
T Consensus 127 ~~~~~~~L~sh~~~~~~~~~~~~~~~~~~l~~~~~~~~--~----~~~~~~i~~~~~~~~~N~f~i~~~----------- 189 (433)
T 3qww_A 127 KLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYL--E----FPDHSSLVVLFAQVNCNGFTIEDE----------- 189 (433)
T ss_dssp SSCCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHHTTTC--C----CCCHHHHHHHHHHHHHHCEEEECT-----------
T ss_pred hhhhHHHHHhhhhccChHHHHHHHHHHHHHHHHHhccc--C----CCCHHHHHHHHHHHcCCceecccC-----------
Confidence 55567889999988876543222211112222332211 1 123566788999999999999641
Q ss_pred CCCCccccccceeEEEeccccccccCCCcCCcEEEEeCCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCC
Q 048211 360 SSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYS 439 (665)
Q Consensus 360 ~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~ 439 (665)
+...+|.||||.+|+|||||+||+.+.|+|++++|||++||++||||||||++. .+++.+||+.|+++|+
T Consensus 190 --------~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~Geel~i~Y~~~--~~~~~~R~~~L~~~~~ 259 (433)
T 3qww_A 190 --------ELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDL--LYPTEDRNDRLRDSYF 259 (433)
T ss_dssp --------TCCEEEEEECTTGGGSEECSSCSEEEEEETTEEEEEESSCBCTTCEEEECCSCT--TSCHHHHHHHHHHHHS
T ss_pred --------CccceeEEecccccccCCCCCCCceEEEcCCEEEEEeccCcCCCCEEEEeecCC--cCCHHHHHHHHhCcCC
Confidence 125689999999999999999999999999999999999999999999999997 5899999999999999
Q ss_pred eeeeccCCCCCccCCccccceecCCCCCCCcccCCcccchhhhhhccCCCCCCCCCCccccccCCCCchhHHHHHHHHhh
Q 048211 440 FRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLLE 519 (665)
Q Consensus 440 F~C~C~rC~~~~~~d~~~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (665)
|+|.|+||.++++++.+. ++++ |+.. +.. .+ -++++..++..++
T Consensus 260 F~C~C~~C~~~~~d~~~~-~~~~----~~~~--~~~------------------------e~-----v~~~~~~~~~~le 303 (433)
T 3qww_A 260 FTCECRECTTKDKDKAKV-EVRK----LSSP--PQA------------------------EA-----IRDMVRYARNVIE 303 (433)
T ss_dssp CCCCSHHHHHCTTHHHHT-CBCC----CSSC--CCH------------------------HH-----HHHHHHHHHHHHH
T ss_pred EEeECCCCCCCCcchhhh-hhhh----cCCC--ccH------------------------HH-----HHHHHHHHHHHHH
Confidence 999999999988754333 3321 2211 000 00 0223333444442
Q ss_pred hcCCccccCCccccccCccccchhhhhhHHHHHHHHHHHH----HHHhHHhh----HHHHHHHHHHHHHhHHHHHHHhhh
Q 048211 520 ENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQ----DAIISKEI----SRAVLLDASRFLGLLRSILHAYNK 591 (665)
Q Consensus 520 ~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~l~~~~~~l~~~~~ 591 (665)
..... .++ | +. ++|...+++.. ..+...++ +...+..+...+++|.+++. +..
T Consensus 304 ~~~~~---~~~-----g---~~-------~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~-~~~ 364 (433)
T 3qww_A 304 EFRRA---KHY-----K---SP-------SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALK-YGQ 364 (433)
T ss_dssp HHHHH---TTT-----S---CH-------HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred HHHHh---hhc-----c---CH-------HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHH-HHH
Confidence 21110 000 0 11 22232332211 11111111 12356666777899999995 888
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHH
Q 048211 592 SIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQ 657 (665)
Q Consensus 592 ~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~ 657 (665)
+.+.++++.||++||.+|..|++||.++++.|+.++| +++.||.+|+..+||++||.|.++..+|+
T Consensus 365 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 365 KIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 8899999999999999999999999999999999999 99999999999999999999988777665
No 2
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=100.00 E-value=3.6e-60 Score=517.05 Aligned_cols=420 Identities=20% Similarity=0.307 Sum_probs=309.5
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccccCCceeccccccccccccccccccccCCcCCCCCCCccccchHHHHhhhcc
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQ 199 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~ 199 (665)
.+|+++.++++||||||++||++||+|+.|+|++.++.......+|.+|+++.+ .+++|++|++++|||++||+.+|.
T Consensus 5 ~~i~~~~~~~~GR~l~Atr~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~-~~~~C~~C~~~~yCs~~Cq~~~w~- 82 (429)
T 3qwp_A 5 LKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKE-KLMRCSQCRVAKYCSAKCQKKAWP- 82 (429)
T ss_dssp CSEEEEECSSSSEEEEESSCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCS-SCEECTTTSCCEESSHHHHHHTHH-
T ss_pred cceeecccCCCCCeEEeCCCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCC-CCCcCCCCCCcccCChhhhhhhhh-
Confidence 467788899999999999999999999999999999887788999999999754 589999999999999999999997
Q ss_pred ccccCCcccccccccchhhHHHHHHhhcCCCCCCCcccccccccccccCCCCCCCchHHHHHHHHHHHhHhhcCCCCCch
Q 048211 200 VFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVP 279 (665)
Q Consensus 200 ~H~~eC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~eC~~~~~~~~~p~~~~l~~R~l~~~~~~~~~~~~~~ 279 (665)
+|+.||...... ++.+++..+++++|++++..... +...+
T Consensus 83 ~Hk~eC~~~~~~--------------------------------------~~~~~~~~~rl~~rill~~~~~~--~~~~~ 122 (429)
T 3qwp_A 83 DHKRECKCLKSC--------------------------------------KPRYPPDSVRLLGRVVFKLMDGA--PSESE 122 (429)
T ss_dssp HHHHHHHHHHHT--------------------------------------TTCCCCHHHHHHHHHHHHHHHSC--CCGGG
T ss_pred hhHHhhhhHHhc--------------------------------------CccCCChHHHHHHHHHHHHhcCC--CCchh
Confidence 788777653210 12234456788899998764321 22334
Q ss_pred hhhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHhhhcCC-CCCCCCccHHHHHHHHhhhhcceeeccccccCCCCCCCC
Q 048211 280 NLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGF-ELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDH 358 (665)
Q Consensus 280 ~~~~~~~L~~h~~~~~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~~~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~ 358 (665)
.|..+.+|++|.+++.++..-.+..+...+..++...... ....+. ..++.+++++.+|+|+|.+.
T Consensus 123 ~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~N~f~i~~~---------- 189 (429)
T 3qwp_A 123 KLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPA---FDLFEAFAKVICNSFTICNA---------- 189 (429)
T ss_dssp SSSCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHTTTTCCSGGGSCTT---CCHHHHHHHHHHHCEEEECT----------
T ss_pred hhhhHHHHhhChhhcChhHHHHHHHHHHHHHHHHhhhcCccccCCCH---HHHHHHHHHHHhcCcccccc----------
Confidence 6777899999998887654322333322233333321100 000111 24678899999999999631
Q ss_pred CCCCCccccccceeEEEeccccccccCCCcCCcEEEEeCCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCC
Q 048211 359 VSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEY 438 (665)
Q Consensus 359 ~~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y 438 (665)
+...+|.||||.+|+|||||.||+.+.|+|++++|||+|||++||||||||++. .+++.+||+.|+++|
T Consensus 190 ---------~~~~~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~--~~~~~~R~~~L~~~~ 258 (429)
T 3qwp_A 190 ---------EMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM--LMTSEERRKQLRDQY 258 (429)
T ss_dssp ---------TSCEEEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCS--SCCHHHHHHHHHHHH
T ss_pred ---------ccccceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCC--CCCHHHHHHHHhccC
Confidence 125689999999999999999999999999999999999999999999999986 589999999999999
Q ss_pred CeeeeccCCCCCccCCccccceecCCCCCCCcccCCcccchhhhhhccCCCCCCCCCCccccccCCCCchhHHHHHHHHh
Q 048211 439 SFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLSSDYIGLVAYLLL 518 (665)
Q Consensus 439 ~F~C~C~rC~~~~~~d~~~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 518 (665)
+|+|.|+||.++..++.++++-.+. ..+.......+... .. .-.|++..+.++.+|
T Consensus 259 ~F~C~C~~C~~~~~~~~~~~~~~~~-------------~~~~~~ll~~ie~~--------~~---~g~~~~a~~~~~~~L 314 (429)
T 3qwp_A 259 CFECDCFRCQTQDKDADMLTGDEQV-------------WKEVQESLKKIEEL--------KA---HWKWEQVLAMCQAII 314 (429)
T ss_dssp CCCCCSHHHHHTTTHHHHTCSCHHH-------------HHHHHHHHHHHHHH--------HH---TTCHHHHHHHHHHHH
T ss_pred CeEeeCCCCCCCcccccccccchhh-------------hHHHHHHHHHHHHH--------Hh---hccHHHHHHHHHHHH
Confidence 9999999999887655444321110 01110000000000 00 012445555666666
Q ss_pred hhcCCccccCCccccccCccccchhhhhhHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 048211 519 EENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRLQDAIISKEISRAVLLDASRFLGLLRSILHAYNKSIAEILE 598 (665)
Q Consensus 519 ~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 598 (665)
+....++...+ .. ....+ ..+..+...+++|.+++. +....+.+++
T Consensus 315 ~~~~~~lg~~h----------------~~---~~~~~--------------~~L~~~y~~~g~~~eA~~-~~~~~L~i~~ 360 (429)
T 3qwp_A 315 SSNSERLPDIN----------------IY---QLKVL--------------DCAMDACINLGLLEEALF-YGTRTMEPYR 360 (429)
T ss_dssp TCSSCCCCTTS----------------HH---HHHHH--------------HHHHHHHHHHTCHHHHHH-HHHHHHHHHH
T ss_pred HhccCcCCccc----------------hH---HHHHH--------------HHHHHHHHhhccHHHHHH-HHHHHHHhHH
Confidence 54444333221 00 00011 233444556788888885 8888899999
Q ss_pred HHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHHHHHhcC
Q 048211 599 KLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQREALKL 663 (665)
Q Consensus 599 ~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~~~~~~~ 663 (665)
+.||+.||.+|..|++||.++++.|+.++| .++.||.+|+.++||++||.|.+.+.+|.++..++
T Consensus 361 ~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999987764
No 3
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=100.00 E-value=1.7e-59 Score=518.42 Aligned_cols=419 Identities=18% Similarity=0.289 Sum_probs=309.7
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccccCCceeccccccccccccccccccccCCcCCCCCCCccccchHHHHhhhcc
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQ 199 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~ 199 (665)
..|++..++.+||||||++||++||+|+.|+|+++++.......+|++|++... .+++|++|++++|||++||+.+|.
T Consensus 7 ~~v~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~-~~~~C~~C~~~~yCs~~Cq~~~w~- 84 (490)
T 3n71_A 7 ENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQE-KLHRCGQCKFAHYCDRTCQKDAWL- 84 (490)
T ss_dssp TTEEEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCS-CCEECTTTSCCEESSHHHHHHHHH-
T ss_pred CceEEEecCCCCceEEeccCCCCCCEEEecCCceEEecccccCCcCCCCCCCCC-CCCCCCCCCCcCcCCHHHhhhhhh-
Confidence 368899999999999999999999999999999998888889999999999643 589999999999999999999997
Q ss_pred ccccCCcccccccccchhhHHHHHHhhcCCCCCCCcccccccccccccCCCCCCCchHHHHHHHHHHHhHhhcCCCCCch
Q 048211 200 VFKNCPMERNINDSVFDNLEEYISQITLDNDFYPEDEHIFEHKHECKGVHWPVILPSDVVLAGRVLVKSVQKNGVSMDVP 279 (665)
Q Consensus 200 ~H~~eC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~eC~~~~~~~~~p~~~~l~~R~l~~~~~~~~~~~~~~ 279 (665)
+|+.||..... |+..++..+++++|+|++.... ....+..
T Consensus 85 ~Hk~eC~~~~~---------------------------------------~~~~p~~~~rl~lRiL~~~~~~-~~~~~~~ 124 (490)
T 3n71_A 85 NHKNECAAIKK---------------------------------------YGKVPNENIRLAARIMWRVERE-GTGLTEG 124 (490)
T ss_dssp HHHHHHHHHHH---------------------------------------HTSCCCHHHHHHHHHHHHHHHT-TSSBCTT
T ss_pred HHHHHhHHHHh---------------------------------------cCcCCCHHHHHHHHHHHHhhcc-CccCcch
Confidence 78888865321 1123345678999999875332 2122334
Q ss_pred hhhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHhhhcCCCCCCCCccHHHHHHHHhhhhcceeeccccccCCCCCCCCC
Q 048211 280 NLLGKLELSHNYSQVSPESKLESHIYAIVLLYCLQHSYGFELPINGASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHV 359 (665)
Q Consensus 280 ~~~~~~~L~~h~~~~~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~ 359 (665)
.+..+.+|++|.+++.++........... ++. +++.. ....+...+..+++++.+|+|+|.+.
T Consensus 125 ~~~~~~~L~sh~~~~~~~~~~~~~~~~~~---~~~-~~~~~--~~~~~~~~l~~~~~~~~~N~f~i~~~----------- 187 (490)
T 3n71_A 125 CLVSVDDLQNHVEHFGEEEQKELRVDVDT---FLQ-YWPPQ--SQQFSMQYISHIFGVINCNGFTLSDQ----------- 187 (490)
T ss_dssp CSSBGGGSCCCGGGCCHHHHHHHHHHHHH---HHH-HSCTT--SCCCCHHHHHHHHHHHHTTEEEEECT-----------
T ss_pred hhhHHHHHHhhhhhcCchHHHHHHHHHHH---HHH-Hcccc--ccCCCHHHHHHHHHHHhccCcccccC-----------
Confidence 56778899999998886554222222122 222 22211 12335667888999999999999641
Q ss_pred CCCCccccccceeEEEeccccccccCCCcCCcEEEEeCC-------------EEEEEEeecCCCCCceeeecCCCCCCCC
Q 048211 360 SSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHAYFLSR-------------TLMIRTTEFVPSGYPLELSYGPQVGQWD 426 (665)
Q Consensus 360 ~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~~~~f~g~-------------~~~vrA~r~I~~GeeI~isY~~~~~~~~ 426 (665)
.| ...+|.||||.+|+|||||+||+.++|+++ +++|+|+|||++||||||||++. .++
T Consensus 188 -~g------~~~~g~gl~p~~s~~NHSC~PN~~~~~~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~--~~~ 258 (490)
T 3n71_A 188 -RG------LQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDF--LHL 258 (490)
T ss_dssp -TS------CSEEEEEECTTGGGCEECSSCSEEEEEECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCS--CSC
T ss_pred -CC------CccceEEEchhhhhcccCCCCCeeEEecCCccccccccccccceEEEEECCCCCCCCEEEEeecCC--CCC
Confidence 01 146899999999999999999999999987 99999999999999999999987 589
Q ss_pred HHHHHHHhhcCCCeeeeccCCCCCccCCccccceecCCCCCCCcccCCcccchhhhhhccCCCCCCCCCCccccccCCCC
Q 048211 427 CKDRLKFLEDEYSFRCQCSGCSELNTSDLVINAFCCVDPNCPGVVLDNSILNCEKQKRKHLPAVPQCSSSAPHLQVGKLS 506 (665)
Q Consensus 427 ~~~Rr~~L~~~y~F~C~C~rC~~~~~~d~~~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (665)
+.+||+.|+++|+|+|.|+||.++.+++.+++. ++ |+ . +.. ..
T Consensus 259 ~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~-~~----~~--~-~s~------e~----------------------- 301 (490)
T 3n71_A 259 SEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAA-KE----DP--K-PSQ------EV----------------------- 301 (490)
T ss_dssp HHHHHHHHHHHHSSCCCCHHHHHTTTHHHHTCB-CS----SS--C-CCH------HH-----------------------
T ss_pred HHHHHHHHHCCCCeEeeCCCCCCCCcccchhhc-cc----CC--C-CCH------HH-----------------------
Confidence 999999999999999999999998876666544 21 11 0 000 00
Q ss_pred chhHHHHHHHHhhhcCCccccCCccccccCccccchhhhhhHHHHHHHHHHH----HHHHhHHhh----HHHHHHHHHHH
Q 048211 507 SDYIGLVAYLLLEENNRTSRYGPGYCLKCGSDRDLESSYATVDEAWIYIRRL----QDAIISKEI----SRAVLLDASRF 578 (665)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~ 578 (665)
..++...++.++++...-.. .-.. ++|...+++. +..+...++ +...+..+...
T Consensus 302 v~~~l~~a~~~le~a~~~~~-----------qg~~-------~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~ 363 (490)
T 3n71_A 302 VKEMIQFSKDTLEKIDKARS-----------EGLY-------HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY 363 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----------TTCH-------HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------CCCH-------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 01223333333322110000 0001 2222222221 111111111 12345666677
Q ss_pred HHhHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHH
Q 048211 579 LGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQ 657 (665)
Q Consensus 579 l~~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~ 657 (665)
+++|.+++. +....+.++++.||+.||.+|..|.+||.+++..|+.++| ..+.||.+|+..+||++||.|.+.+.+|.
T Consensus 364 ~g~~~eA~~-~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 442 (490)
T 3n71_A 364 LQAYEEASH-YARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM 442 (490)
T ss_dssp TTCHHHHHH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred hcCHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 889999995 7788899999999999999999999999999999999999 99999999999999999999999999998
Q ss_pred HHHhc
Q 048211 658 REALK 662 (665)
Q Consensus 658 ~~~~~ 662 (665)
++..+
T Consensus 443 ~~~~e 447 (490)
T 3n71_A 443 QTEME 447 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 4
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=99.44 E-value=2e-14 Score=141.90 Aligned_cols=69 Identities=17% Similarity=0.401 Sum_probs=59.1
Q ss_pred eEEEeccc-cccccCCCcCCcEEEEe-CCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeeccCCCC
Q 048211 372 VGLAIYTA-GSLFNHSCLPNIHAYFL-SRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSE 449 (665)
Q Consensus 372 ~g~glyp~-~Sl~NHSC~PN~~~~f~-g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~ 449 (665)
...++|+. ++++||||.||+...+. +.++.|+|+|||++|||||++|++.+ | ..+.|.|.|.+|..
T Consensus 168 ~~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~--~----------~~~~f~C~C~~C~~ 235 (247)
T 3rq4_A 168 RSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGF--F----------GEKNEHCECHTCER 235 (247)
T ss_dssp TEEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTS--S----------SGGGTTCCCHHHHH
T ss_pred ccceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchh--c----------CCCCCEEECCCCCC
Confidence 46788886 88999999999977765 67999999999999999999999863 4 34789999999987
Q ss_pred Ccc
Q 048211 450 LNT 452 (665)
Q Consensus 450 ~~~ 452 (665)
+.+
T Consensus 236 ~~~ 238 (247)
T 3rq4_A 236 KGE 238 (247)
T ss_dssp HTC
T ss_pred CCC
Confidence 654
No 5
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=99.29 E-value=9.5e-13 Score=131.14 Aligned_cols=62 Identities=23% Similarity=0.449 Sum_probs=53.0
Q ss_pred ccccccccCCCcCCcEEEEeCC-EEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeeccCCCCC
Q 048211 377 YTAGSLFNHSCLPNIHAYFLSR-TLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQCSGCSEL 450 (665)
Q Consensus 377 yp~~Sl~NHSC~PN~~~~f~g~-~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~ 450 (665)
...++++||||.||+.+.+.|. ++.++|+|||++|||||++|++.+ ++ .+.|.|.|.+|.-.
T Consensus 203 g~~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~--~~----------~~~f~C~C~~c~cr 265 (273)
T 3s8p_A 203 LGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGF--FG----------ENNEFCECYTCERR 265 (273)
T ss_dssp ESGGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTT--TS----------GGGTTCCCHHHHHH
T ss_pred cchHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchh--cC----------CCCeEEECCCCcCC
Confidence 3456999999999999888875 899999999999999999999763 43 36799999999744
No 6
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=99.23 E-value=1.7e-12 Score=114.93 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=46.5
Q ss_pred EEEeccccccccCCCcCCcEEEEe--CCEEEEEEeecCCCCCceeeecCCCCCCCCH
Q 048211 373 GLAIYTAGSLFNHSCLPNIHAYFL--SRTLMIRTTEFVPSGYPLELSYGPQVGQWDC 427 (665)
Q Consensus 373 g~glyp~~Sl~NHSC~PN~~~~f~--g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~ 427 (665)
+..+++.++++||||.||+...+. +.++.++|+|||++|||||++|++.+ |+.
T Consensus 58 ~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~--~~~ 112 (119)
T 1n3j_A 58 SAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDY--WLS 112 (119)
T ss_dssp EEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCC--CCC
T ss_pred cccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEecCchh--hcC
Confidence 456889999999999999999887 35899999999999999999999874 544
No 7
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.20 E-value=1.1e-11 Score=114.43 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQI-------CPSYAKAW----YRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~-------~p~~~ka~----~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+.+|.|||.++.++|+|++|+.++++||++ +|+++++| +|+|.++..+|+|++|+.+|+++++++|++
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4669999999999999999999999999999 99999999 999999999999999999999999999987
Q ss_pred HHH
Q 048211 80 AGK 82 (665)
Q Consensus 80 ~~~ 82 (665)
.++
T Consensus 136 ~~~ 138 (159)
T 2hr2_A 136 KGE 138 (159)
T ss_dssp CSC
T ss_pred HHH
Confidence 543
No 8
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=1.8e-10 Score=106.94 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-HHHHHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA-GKKQIE 86 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~-~~~~~~ 86 (665)
.+..+.+|.|+|.+|+++|+|++|+.++++||+++|+++++|+++|.++..+|+|++|+.+|+++++++|++. .+....
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999987 555555
Q ss_pred HHHHHHHh
Q 048211 87 SELKIILD 94 (665)
Q Consensus 87 ~~l~~~~~ 94 (665)
..++..+.
T Consensus 139 ~~~~~~~~ 146 (162)
T 3rkv_A 139 KIVTERRA 146 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 9
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.11 E-value=4.3e-10 Score=100.29 Aligned_cols=70 Identities=20% Similarity=0.201 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+..+.|+|.+|++.|+|++|++.+++|++++|+++.+|+.+|.++..+|++++|+++|+++++++|++.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 4556666666666666666666666666666666666666666666666666666666666666666654
No 10
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=99.03 E-value=1.7e-10 Score=110.18 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=41.6
Q ss_pred ccccccCCCcCCcEEEE---eC-CEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeec
Q 048211 379 AGSLFNHSCLPNIHAYF---LS-RTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQC 444 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~f---~g-~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C 444 (665)
.++++||||.||+...+ +| .++.++|+|||++|||||++|++.+ +.. .+.|.|.|
T Consensus 124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~--~~~---------~~~~~C~C 182 (192)
T 2w5y_A 124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPI--EDA---------SNKLPCNC 182 (192)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC------------------CCBCCC
T ss_pred hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCch--hcC---------CCCceeEC
Confidence 46789999999997643 33 3799999999999999999999753 321 36799998
No 11
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.1e-10 Score=90.72 Aligned_cols=57 Identities=14% Similarity=0.294 Sum_probs=38.2
Q ss_pred cCCCCCCcccccCCceeccccccccccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCcc
Q 048211 138 YDIPEGSLVHSEEPYAVTISKHCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPME 207 (665)
Q Consensus 138 rdi~~GevIl~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~~ 207 (665)
++|++||+|+.++| ....|..|++. .+.+|++|+.++|||.+||..+|. .|+.+|..
T Consensus 2 ~~~~~G~~il~~~~---------~~~~C~~C~~~---~~~~Cs~C~~~~YCs~~CQ~~~W~-~Hk~~C~~ 58 (64)
T 2odd_A 2 NLYFQGENLYFQGD---------SSESCWNCGRK---ASETCSGCNTARYCGSFCQHKDWE-KHHHICGQ 58 (64)
T ss_dssp -------------C---------CSSSCTTTSSC---CCEEETTTSCCEESSHHHHHHHHH-HHTTTTTS
T ss_pred CcCCCCCEEeeCCC---------CCCcCccccCC---CcccCCCCCChhhCCHHHHHHHHH-HHhHHHhc
Confidence 68999999999998 24689999984 478999999999999999999998 68888864
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=7.1e-09 Score=95.61 Aligned_cols=70 Identities=7% Similarity=-0.173 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++.++|.+++++|+|++|+..++++++++|+++.+|+.+|.++..+|+|++|++.|+++++++|++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 4556667777777777777777777777777777777777777777777777777777777777777654
No 13
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=1.4e-08 Score=90.36 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.+|.|+|.+|+++|+|++|+.++++|++++|+++++|+++|.++..+|++++|++.|+++++++|++...
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 46 NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 577899999999999999999999999999999999999999999999999999999999999999999844
No 14
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.1e-08 Score=90.10 Aligned_cols=65 Identities=28% Similarity=0.541 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~ 76 (665)
+.+|.|+|.+|+++|+|++|+.++++|++++|+++++|+++|.++..+|++++|++.|+++++++
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 45566666666666666666666666666666666666666666666666666666666666666
No 15
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=98.83 E-value=1.4e-09 Score=102.05 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=42.7
Q ss_pred cccccCCCcCCcEEE--EeCC--EEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhh
Q 048211 380 GSLFNHSCLPNIHAY--FLSR--TLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLE 435 (665)
Q Consensus 380 ~Sl~NHSC~PN~~~~--f~g~--~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~ 435 (665)
+.++||||.||+... +.++ ++.++|+|||++|||||++|++.+ .....|+..|+
T Consensus 108 aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~--~~~~~~~~~L~ 165 (166)
T 3f9x_A 108 GRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRS--KASIEAHPWLK 165 (166)
T ss_dssp GGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCC--HHHHHHCGGGG
T ss_pred hheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCCh--hhHhhhCchhc
Confidence 568999999998654 3343 799999999999999999999763 45566666664
No 16
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=98.80 E-value=3.9e-09 Score=103.64 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=36.9
Q ss_pred ccccccCCCcCCcEEEE--eC--CEEEEEEeecCCCCCceeeecCCCC
Q 048211 379 AGSLFNHSCLPNIHAYF--LS--RTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~f--~g--~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
.+.++||||.||+.... .+ .++.|+|+|||++|||||++|++.+
T Consensus 146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~ 193 (222)
T 3ope_A 146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHS 193 (222)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSB
T ss_pred cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcc
Confidence 45688999999997654 33 3799999999999999999999753
No 17
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=98.77 E-value=3.4e-09 Score=104.66 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=42.9
Q ss_pred ccccccCCCcCCcEEEE--eC--CEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeec
Q 048211 379 AGSLFNHSCLPNIHAYF--LS--RTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQC 444 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~f--~g--~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C 444 (665)
.+.++||||.||+...+ .+ .++.|+|+|||++|||||++|+..+ ++ ...|.|.|
T Consensus 165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~--~~----------~~~~~C~C 222 (232)
T 3ooi_A 165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLEC--LG----------NGKTVCKC 222 (232)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCS--TT----------CTTCBCCC
T ss_pred ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCc--CC----------CCCcEeEC
Confidence 56789999999997643 22 4799999999999999999998653 32 34588887
No 18
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.76 E-value=2.4e-08 Score=88.85 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
..+.++.|.|.++++.|+|++|+..+++||+++|+++.+|+.+|.++..+|+|++|+++|+++++++|++
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 4678899999999999999999999999999999999999999999999999999999999999987754
No 19
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.76 E-value=3.2e-08 Score=90.60 Aligned_cols=68 Identities=7% Similarity=-0.032 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
..++.++|.++++.|+|++|+..+.++++++|+++.+|+.+|.++..+|+|++|++.|+++++++|++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555554
No 20
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.74 E-value=2e-08 Score=89.42 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.+.+|.|+|.+|+++|+|++|++++++||+++|++...+..+|.++..+|..-.+..+++.|++.
T Consensus 41 ~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~ 105 (127)
T 4gcn_A 41 NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105 (127)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999998888887753
No 21
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.73 E-value=3.2e-08 Score=83.96 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++.++|.+|+++|+|++|+..+++|++++|+++.+|+.+|.++..+|++++|++.|++++++.|.+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999876543
No 22
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.71 E-value=5.8e-08 Score=89.93 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.+|.|+|.+|+++|+|++|+.++++|++++|+++.+|+++|.++..+|++++|+..|+++++++|++..
T Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 35667778888888888888888888888888888888888888888888888888888888887777643
No 23
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.71 E-value=4.7e-08 Score=107.07 Aligned_cols=75 Identities=16% Similarity=0.311 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
.+.+.+|.|+|.+|+++++|++|+.++++||+++|+++++|+++|.++..+|+|++|+.+|+++++++|++....
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~ 388 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 345899999999999999999999999999999999999999999999999999999999999999999986543
No 24
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.71 E-value=4.4e-08 Score=88.62 Aligned_cols=70 Identities=7% Similarity=-0.052 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
....+.++|.++++.|+|++|+..++++++.+|+++.+|+.+|.++..+|+|++|+..|+++++++|++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 3445666666666666666666666666666666666666666666666666666666666666666653
No 25
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.70 E-value=9.2e-08 Score=83.34 Aligned_cols=82 Identities=12% Similarity=0.023 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES 87 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 87 (665)
.+..+.++.|+|.+|+++|+|++|+..+++|++++|+++.+++.+|.++..+|++++|++.|+++++..|++.......+
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999876544443
Q ss_pred HH
Q 048211 88 EL 89 (665)
Q Consensus 88 ~l 89 (665)
.+
T Consensus 103 ai 104 (117)
T 3k9i_A 103 AI 104 (117)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 26
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=1.4e-07 Score=86.91 Aligned_cols=75 Identities=9% Similarity=0.070 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI 85 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 85 (665)
.+.+|.|+|.+|..+|+|++|+..+++|++++|+++.+|+++|.++..+|++++|+..|++++++.|+.+.+.+.
T Consensus 69 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A 143 (151)
T 3gyz_A 69 NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143 (151)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999997644333
No 27
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.67 E-value=9e-08 Score=101.82 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESE 88 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 88 (665)
+..+.+|.|+|.+|+++|+|++|+.++++||+++|+++++|+++|.++..+|+|++|+++|+++++++|++.........
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999998755444444
Q ss_pred HHH
Q 048211 89 LKI 91 (665)
Q Consensus 89 l~~ 91 (665)
+..
T Consensus 350 ~~~ 352 (370)
T 1ihg_A 350 VKQ 352 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 28
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.66 E-value=1.5e-07 Score=86.30 Aligned_cols=73 Identities=12% Similarity=-0.057 Sum_probs=69.2
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+..+..+.+.|.+|+++|+|++|++.+++|++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 100 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKD 100 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999864
No 29
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=1.3e-07 Score=99.15 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.+.+|.|+|.+|+++|+|++|+..+++|++++|+++++|+++|.++..+|+|++|+.+|+++++++|++...
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 266 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999998643
No 30
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=3e-07 Score=78.28 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+..+.++|.+++++|+|++|+..+++|++++|+++.+|+.+|.++..+|+|++|++.|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 467899999999999999999999999999999999999999999999999999999999999999997
No 31
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.65 E-value=1.7e-07 Score=89.66 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
...++.|+|.+|+++|+|++|+..++++++++|+++++|+++|.++..+|+|++|++.|+++++++|++.........+.
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999875544444443
Q ss_pred H
Q 048211 91 I 91 (665)
Q Consensus 91 ~ 91 (665)
.
T Consensus 167 ~ 167 (198)
T 2fbn_A 167 N 167 (198)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=98.63 E-value=2.1e-08 Score=101.26 Aligned_cols=43 Identities=35% Similarity=0.525 Sum_probs=35.3
Q ss_pred ccccccCCCcCCcEEE--EeCC--EEEEEEeecCCCCCceeeecCCC
Q 048211 379 AGSLFNHSCLPNIHAY--FLSR--TLMIRTTEFVPSGYPLELSYGPQ 421 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~--f~g~--~~~vrA~r~I~~GeeI~isY~~~ 421 (665)
.+.++||||.||+... +.++ +|.|.|+|||++|||||++|+..
T Consensus 190 ~aRFiNHSC~PN~~~~~~~v~g~~ri~~fA~RdI~~GEELT~dY~~~ 236 (278)
T 3h6l_A 190 CSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQ 236 (278)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTT
T ss_pred hhhhcccCCCCCceeEEEEeCCceEEEEEECCccCCCCEEEEecCCC
Confidence 4568999999997543 3343 78999999999999999999854
No 33
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.63 E-value=6.3e-08 Score=89.06 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHL----------VECLRDCNRAVQICPSYAKAWYRRGKVNVSLE-----------NHDDAVHDL 69 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~----------~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~-----------~~~~A~~~~ 69 (665)
.+.+|.|.+.++..++++ ++|+..+++||++||+++.+|+.+|.+|..+| +|++|++.|
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~ 114 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 114 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHH
Confidence 567899999999999876 59999999999999999999999999999885 899999999
Q ss_pred HHHHhcCCChHHHHH
Q 048211 70 TIAKNRESSLAGKKQ 84 (665)
Q Consensus 70 ~~al~l~p~~~~~~~ 84 (665)
++|++++|++....+
T Consensus 115 ~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 115 QQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHHHCTTCHHHHH
T ss_pred HHHHHhCCCCHHHHH
Confidence 999999999874433
No 34
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.62 E-value=4.8e-07 Score=73.98 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=69.6
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
+...+.++.++|.+++++|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++...
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 79 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHH
Confidence 345678899999999999999999999999999999999999999999999999999999999999999987643
No 35
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=98.62 E-value=1.6e-08 Score=103.87 Aligned_cols=64 Identities=22% Similarity=0.383 Sum_probs=36.0
Q ss_pred ccccccCCCcCCcEEEE-eC-------CEEEEEEeecCCCCCceeeecCCCCCCCCHH-HHHHHhhcCCCeeeec
Q 048211 379 AGSLFNHSCLPNIHAYF-LS-------RTLMIRTTEFVPSGYPLELSYGPQVGQWDCK-DRLKFLEDEYSFRCQC 444 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~f-~g-------~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~-~Rr~~L~~~y~F~C~C 444 (665)
.+.++||||+||+.+.. .+ .++.|+|+|+|++|||||++|++.+ |... +.....+....|.|.|
T Consensus 220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~--~~~~~~~~~~~k~~~~~~C~C 292 (302)
T 1ml9_A 220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGL--TGLESDAHDPSKISEMTKCLC 292 (302)
T ss_dssp GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-------------------------
T ss_pred HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCc--cccccccccccccCCCcEeeC
Confidence 46789999999997643 22 3799999999999999999998753 4322 1111222234578877
No 36
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.8e-07 Score=80.09 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+..+.++|..+++.|+|++|+..++++++++|+++.+|+.+|.++..+|+|++|+..|+++++++|++..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 73 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999764
No 37
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=98.61 E-value=7.4e-09 Score=105.26 Aligned_cols=56 Identities=29% Similarity=0.728 Sum_probs=42.4
Q ss_pred ccccccCCCcCCcEEE--EeC------CEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeeec
Q 048211 379 AGSLFNHSCLPNIHAY--FLS------RTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQC 444 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~--f~g------~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~C 444 (665)
.+.++||||.||+... +.. .+|.++|+|||++|||||++|++.+ |+. ....|.|.|
T Consensus 216 ~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~--~~~--------~~~~~~C~C 279 (287)
T 3hna_A 216 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERF--WDI--------KGKLFSCRC 279 (287)
T ss_dssp GGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHH--HHH--------HTTTCCCCC
T ss_pred chheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCcc--ccc--------CCCcCEeeC
Confidence 4557899999999753 321 3899999999999999999998542 221 134789988
No 38
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.57 E-value=1.9e-07 Score=85.47 Aligned_cols=78 Identities=6% Similarity=0.011 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCChHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHD-LTIAKNRESSLAGKKQIESE 88 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~-~~~al~l~p~~~~~~~~~~~ 88 (665)
.+.+|.++|.+|.++|++++|+..+++|++++|+++.+|+++|.++..+|++++|.+. ++++++++|++...-.++.+
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ 142 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999887765 58999999999865554433
No 39
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=98.56 E-value=1.2e-08 Score=103.99 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=37.6
Q ss_pred ccccccCCCcCCcEEEE---eC--CEEEEEEeecCCCCCceeeecCCCC
Q 048211 379 AGSLFNHSCLPNIHAYF---LS--RTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~f---~g--~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
.+.++||||.||+.+.. ++ .++.|+|+|||++|||||++|++.+
T Consensus 205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~ 253 (290)
T 3bo5_A 205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRY 253 (290)
T ss_dssp GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCT
T ss_pred chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCcc
Confidence 56799999999997653 33 4899999999999999999999764
No 40
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=8.2e-07 Score=77.83 Aligned_cols=83 Identities=10% Similarity=0.045 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
..+.++.++|.+|+++|+|++|+..++++++.+|++ +.+++.+|.++..+|++++|+..|+++++..|++.......
T Consensus 37 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 37 YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 345678888888888888888888888888888888 78888888888888888888888888888888877655555
Q ss_pred HHHHHH
Q 048211 87 SELKII 92 (665)
Q Consensus 87 ~~l~~~ 92 (665)
..+..+
T Consensus 117 ~~l~~l 122 (129)
T 2xev_A 117 ERLQSI 122 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 41
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=7.5e-07 Score=79.73 Aligned_cols=72 Identities=26% Similarity=0.197 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
...++.++|.+|+.+|+|++|+..++++++++|+++.+|+++|.++..+|++++|+..|+++++++|++...
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 135 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 467777788888888888888888888888877777888888888888888888888888888777776633
No 42
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.52 E-value=1e-07 Score=100.01 Aligned_cols=74 Identities=24% Similarity=0.264 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
.+|.|+|.+|+++|+|++|+..+++||+++|+++++|+++|.++..+|+|++|+.+|+++++++|++......+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L 304 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL 304 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999987543333
No 43
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.52 E-value=3.4e-07 Score=84.32 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-------YAK-----AWYRRGKVNVSLENHDDAVHDLTIAKNR--- 75 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-------~~k-----a~~r~a~~~~~l~~~~~A~~~~~~al~l--- 75 (665)
.+..+.|++..++++|+|++|+..|++||+++|+ +.. +|+++|.++..+|+|++|+.+|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5778899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ----CCChHH
Q 048211 76 ----ESSLAG 81 (665)
Q Consensus 76 ----~p~~~~ 81 (665)
+|++..
T Consensus 90 ~~e~~pd~~~ 99 (159)
T 2hr2_A 90 RGELNQDEGK 99 (159)
T ss_dssp HCCTTSTHHH
T ss_pred cccCCCchHH
Confidence 998753
No 44
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.52 E-value=4.2e-07 Score=80.70 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+..+.++|.+++..|+|++|+..+.++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH
Confidence 4566777777777777777777777777777777777777777777777777777777777777777654
No 45
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.52 E-value=6.6e-07 Score=74.85 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAK-AWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~k-a~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
..++|.++++.|+|++|+..++++++.+|+++. +|+.+|.++..+|++++|++.|+++++++|++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 368999999999999999999999999999999 99999999999999999999999999999998643
No 46
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=98.50 E-value=7.1e-08 Score=98.68 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=37.0
Q ss_pred ccccccCCCcCCcEEE--EeC------CEEEEEEeecCCCCCceeeecCCCC
Q 048211 379 AGSLFNHSCLPNIHAY--FLS------RTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~--f~g------~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
.+.++||||+||+... +.+ .++.++|+|||++|||||++|++.+
T Consensus 213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~ 264 (299)
T 1mvh_A 213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAK 264 (299)
T ss_dssp GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTS
T ss_pred hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCcc
Confidence 5668999999999753 322 3899999999999999999999764
No 47
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.50 E-value=5.5e-08 Score=97.35 Aligned_cols=44 Identities=30% Similarity=0.297 Sum_probs=36.6
Q ss_pred ccccccCCCcCCcEEEE-e----CCEEEEEEeecCCCCCceeeecCCCC
Q 048211 379 AGSLFNHSCLPNIHAYF-L----SRTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~f-~----g~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
.+.++||||.||+...+ . +..+.++|+|||++|||||++|+...
T Consensus 186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~~ 234 (261)
T 2f69_A 186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH 234 (261)
T ss_dssp CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCS
T ss_pred ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCcc
Confidence 35789999999997765 2 23459999999999999999999754
No 48
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.49 E-value=1.4e-06 Score=80.40 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=70.8
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+....+..+.++|.++++.|+|++|+..++++++++|+++.+|+.+|.++..+|+|++|+..|+++++++|++..
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 445688999999999999999999999999999999999999999999999999999999999999999999753
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.48 E-value=3.5e-07 Score=85.93 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
..++.++|.+|.++|+|++|++.++++++++|+++.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 34455666666666666666666666666666666666666666666666666666666666666554
No 50
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=98.48 E-value=1.1e-07 Score=97.30 Aligned_cols=43 Identities=26% Similarity=0.579 Sum_probs=36.7
Q ss_pred ccccccCCCcCCcEEE--EeC------CEEEEEEeecCCCCCceeeecCCC
Q 048211 379 AGSLFNHSCLPNIHAY--FLS------RTLMIRTTEFVPSGYPLELSYGPQ 421 (665)
Q Consensus 379 ~~Sl~NHSC~PN~~~~--f~g------~~~~vrA~r~I~~GeeI~isY~~~ 421 (665)
.+.++||||+||+... +.+ .++.++|+|||++|||||++|+..
T Consensus 215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~ 265 (300)
T 2r3a_A 215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMK 265 (300)
T ss_dssp GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGS
T ss_pred hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCC
Confidence 5679999999999764 221 489999999999999999999975
No 51
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=98.48 E-value=5.9e-08 Score=105.55 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=56.5
Q ss_pred eEEEeccccccccCCCcCCcEEEEeCCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeee
Q 048211 372 VGLAIYTAGSLFNHSCLPNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRC 442 (665)
Q Consensus 372 ~g~glyp~~Sl~NHSC~PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C 442 (665)
.+.+|.|.+.|+||||.||+.+.|+++.++++|.++|++||||+||||+. + ...|...|+|..
T Consensus 215 ~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~~----~----n~~ll~~YGF~~ 277 (449)
T 3qxy_A 215 NSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQM----A----NWQLIHMYGFVE 277 (449)
T ss_dssp CCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSSC----C----HHHHHHHHSCCC
T ss_pred CceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCCC----C----HHHHHHhCCCCC
Confidence 56789999999999999999999999999999999999999999999974 2 355667899985
No 52
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=98.47 E-value=1.3e-07 Score=103.90 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=69.6
Q ss_pred ccHHHHHHHHhhhhcceeeccccccCCCCCCCCCCCCCccccccceeEEEeccccccccCCCcCCcEE-EEeCCEEEEEE
Q 048211 326 ASVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNIHA-YFLSRTLMIRT 404 (665)
Q Consensus 326 ~~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~~~-~f~g~~~~vrA 404 (665)
.+.......++.+..++|.+... + | ...+.+|+|.+.|+||||.||... .++++.+.++|
T Consensus 238 ~t~e~f~wA~~~v~SRa~~~~~~---~---------g-------~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a 298 (497)
T 3smt_A 238 FTYEDYRWAVSSVMTRQNQIPTE---D---------G-------SRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVA 298 (497)
T ss_dssp CCHHHHHHHHHHHHHHCEEEECT---T---------S-------SSEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEE
T ss_pred cCHHHHHHhhheEecccccccCc---c---------c-------ccccceeechHHhhcCCCcccceeeeccCCeEEEEe
Confidence 35566666677788888887531 1 1 235789999999999999997543 34568899999
Q ss_pred eecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeee
Q 048211 405 TEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQ 443 (665)
Q Consensus 405 ~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~ 443 (665)
.++|++||||+||||+. + ...|...|+|.+.
T Consensus 299 ~~~i~~Geei~isYG~~----~----n~~Ll~~YGFv~~ 329 (497)
T 3smt_A 299 LQDFRAGEQIYIFYGTR----S----NAEFVIHSGFFFD 329 (497)
T ss_dssp SSCBCTTCEEEECCCSC----C----HHHHHHHHSCCCT
T ss_pred CCccCCCCEEEEeCCCC----C----hHHHHHHCCCCCC
Confidence 99999999999999974 2 2566678999964
No 53
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.46 E-value=3.5e-07 Score=80.46 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
..+.++|.++++.|++++|+..+++|++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 347889999999999999999999999999999999999999999999999999999999999999764
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.45 E-value=1.2e-06 Score=82.20 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.+|.|+|.+|.++|+|++|+..+++|++++|+++.+|+.+|.++..+|++++|+..+.++....|++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998644
No 55
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.45 E-value=1.5e-06 Score=76.29 Aligned_cols=70 Identities=9% Similarity=-0.035 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++.++|.++..+|++++|+..+++|++++|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus 50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 50 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999864
No 56
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=1.9e-06 Score=73.37 Aligned_cols=69 Identities=9% Similarity=0.079 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+..+.++|.+++..|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..++++++++|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 445666666666666666666666666666666666666666666666666666666666666666654
No 57
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=98.43 E-value=6.4e-08 Score=99.39 Aligned_cols=42 Identities=31% Similarity=0.338 Sum_probs=35.3
Q ss_pred cccccCCCcCCcEEEEe-C---CE-EEEEEeecCCCCCceeeecCCC
Q 048211 380 GSLFNHSCLPNIHAYFL-S---RT-LMIRTTEFVPSGYPLELSYGPQ 421 (665)
Q Consensus 380 ~Sl~NHSC~PN~~~~f~-g---~~-~~vrA~r~I~~GeeI~isY~~~ 421 (665)
+.++||||+||+...+. . .+ +.|+|+|||++|||||++|+..
T Consensus 241 ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~ 287 (293)
T 1h3i_A 241 GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 287 (293)
T ss_dssp GGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETT
T ss_pred eeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCC
Confidence 56899999999987762 2 23 5899999999999999999854
No 58
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.43 E-value=7.2e-07 Score=77.08 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+.++.++|.+|+.+|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|++++++.|+.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 457899999999999999999999999999999999999999999999999999999999999998754
No 59
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=1.7e-06 Score=79.03 Aligned_cols=84 Identities=6% Similarity=0.070 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
.+.++.++|.+|..+|+|++|+..+++|++++|+++.+|+.+|.++..+|++++|++.|+++++++|++.....+..++.
T Consensus 54 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 133 (148)
T 2vgx_A 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS 133 (148)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999998766556666666
Q ss_pred HHHh
Q 048211 91 IILD 94 (665)
Q Consensus 91 ~~~~ 94 (665)
.+++
T Consensus 134 ~~l~ 137 (148)
T 2vgx_A 134 SMLE 137 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 60
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.41 E-value=1.6e-06 Score=83.76 Aligned_cols=72 Identities=13% Similarity=0.051 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.++.++|.+|.++|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++...
T Consensus 53 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 53 SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 344445599999999999999999999999999999999999999999999999999999999999998643
No 61
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=98.40 E-value=1.9e-07 Score=85.16 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=39.3
Q ss_pred cccccCCCcC---CcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211 380 GSLFNHSCLP---NIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 380 ~Sl~NHSC~P---N~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
+-++||||.| |+...-.++++.++|+|||++||||++.|++.+
T Consensus 100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY~~~~ 145 (149)
T 2qpw_A 100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGED 145 (149)
T ss_dssp GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECCCCCC
T ss_pred eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEccCCcc
Confidence 5699999999 998877788999999999999999999999764
No 62
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=2.4e-06 Score=76.94 Aligned_cols=84 Identities=10% Similarity=0.122 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
.+.+|.++|.+|.++|+|++|+..+++|++++|+++.+|+.+|.++..+|++++|+..|+++++++|++.....+..++.
T Consensus 51 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 51 DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999998766556666665
Q ss_pred HHHh
Q 048211 91 IILD 94 (665)
Q Consensus 91 ~~~~ 94 (665)
.+++
T Consensus 131 ~~l~ 134 (142)
T 2xcb_A 131 AMLE 134 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 63
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=3.3e-06 Score=74.77 Aligned_cols=68 Identities=29% Similarity=0.417 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
.+.++.|+|.+|+.+|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 42 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 46789999999999999999999999999999999999999999999999999999999999999887
No 64
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.34 E-value=3.1e-06 Score=73.97 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=64.4
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 6 KDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 6 ~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.........+.++|.++++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 3445678888888888889999999999999998888888888888899888889999999888888888887653
No 65
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.31 E-value=6.6e-06 Score=71.26 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
...+..+.+.|..++..|+|++|+..++++++.+|+++.+++.+|.++..+|++++|++.++++++++|++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 80 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH
Confidence 346667777777777777777777777777777777777777777777777777777777777777777654
No 66
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.29 E-value=4.6e-06 Score=86.03 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211 4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
.|.+......++.++|.+|.++|++++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++....
T Consensus 264 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 34455566788999999999999999999999999999999999999999999999999999999999999999988666
Q ss_pred HHHHHHHHHHh
Q 048211 84 QIESELKIILD 94 (665)
Q Consensus 84 ~~~~~l~~~~~ 94 (665)
.....+...++
T Consensus 344 ~~l~~~~~~~~ 354 (359)
T 3ieg_A 344 EGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655554
No 67
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.29 E-value=6.5e-06 Score=75.04 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+.++.++|.++..+|+|++|+..+.++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 116 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 116 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence 5667788888888888888888888888888888888888888888888888888888888888777654
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.29 E-value=3.1e-06 Score=97.65 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=64.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+.+-.+.+|.|+|.+|.++|+|++|+..+++||+++|+++.+|+++|.++..+|++++|++.|++|++++|++..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~ 78 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 445578889999999999999999999999999999999999999999999999999999999999999988753
No 69
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=3.5e-06 Score=77.54 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQI------------------CPSYAKAWYRRGKVNVSLENHDDAVHDLT 70 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~------------------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~ 70 (665)
--.+..+.++|..+++.|+|++|+..+.+|+++ +|.++.+|+++|.|+..+|+|++|+.+++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 347889999999999999999999999999999 77788999999999999999999999999
Q ss_pred HHHhcCCChHH
Q 048211 71 IAKNRESSLAG 81 (665)
Q Consensus 71 ~al~l~p~~~~ 81 (665)
++++++|++..
T Consensus 88 ~al~~~p~~~~ 98 (162)
T 3rkv_A 88 EVLKREETNEK 98 (162)
T ss_dssp HHHHHSTTCHH
T ss_pred HHHhcCCcchH
Confidence 99999999763
No 70
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.25 E-value=3.1e-06 Score=90.22 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-HDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~ 81 (665)
-.+.+|.+++.++.++|++++|+..+++||+++|+++.+|+.+|.++..+|+ +++|++.|+++++++|++..
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 3667778888888888888888888888888888888888888888888886 88888888888888887654
No 71
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.25 E-value=1.1e-06 Score=89.36 Aligned_cols=69 Identities=29% Similarity=0.404 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+.+|.|+|.+|.++|+|++|+.++++|++++|+++++++++|.++..+|++++|+..|+++++++|++
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 467889999999999999999999999999999999999999999999999999999999999988764
No 72
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.24 E-value=4e-06 Score=81.57 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+.++.++|.++++.|++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 74 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 3468888999999999999999999999999999999999999999999999999999999999998753
No 73
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.21 E-value=5.9e-06 Score=71.71 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSY-------AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
.++.++|.+|..+|+|++|+..+.++++.+|++ +.+|+++|.++..+|++++|++.|++++++.|+
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 445555555555555555555555555554444 555555555555555555555555555555553
No 74
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=4.5e-06 Score=91.79 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIESEL 89 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~l 89 (665)
.+.+|.|+|.+|.++|+|++|+..+++|++++|+++++|+++|.++..+|++++|++.|+++++++|++.........+
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999999999876543333333
No 75
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=1e-05 Score=70.58 Aligned_cols=72 Identities=25% Similarity=0.370 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
...++.++|.+|..+|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++...
T Consensus 49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 120 (133)
T 2lni_A 49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120 (133)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999987643
No 76
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=7.3e-06 Score=69.00 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--hH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS--LA 80 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~--~~ 80 (665)
+.++.++|.++++.|+|++|+..++++++.+|.++.+|+.+|.++..+|++++|+..|+++++++|+ +.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 76 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence 4457889999999999999999999999999999999999999999999999999999999999998 65
No 77
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.18 E-value=9.9e-06 Score=75.42 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhcCCCh
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKV-NVSLENH--DDAVHDLTIAKNRESSL 79 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~-~~~l~~~--~~A~~~~~~al~l~p~~ 79 (665)
.++.++|.+|+.+|+|++|+..+.++++++|+++.+++.+|.+ +...|++ ++|+..|+++++++|++
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 3444455555555555555555555555555555555555555 4444554 55555555555554444
No 78
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=5.3e-06 Score=69.89 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPS--YAKAWYRRGKVNVSL-ENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~--~~ka~~r~a~~~~~l-~~~~~A~~~~~~al~l~p~~ 79 (665)
...++.++|.+|+.+|+|++|+..++++++.+|+ ++.+|+.+|.++..+ |++++|++.+++++...|++
T Consensus 39 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 39 ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 3567899999999999999999999999999999 999999999999999 99999999999999998875
No 79
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.18 E-value=7.8e-06 Score=79.44 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL 59 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l 59 (665)
.+.++.++|.++.++|++++|+..++++++++|+++.+|+.+|.++..+
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 86 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL 86 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 4677899999999999999999999999999999999999999998776
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.17 E-value=7.3e-06 Score=94.55 Aligned_cols=71 Identities=28% Similarity=0.360 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.+|.|+|.+|.++|++++|+..+++|++++|+++.+|+++|.++..+|++++|++.|+++++++|++..
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~ 112 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 46678888888888888888888888888888888888888888888888888888888888888888753
No 81
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.15 E-value=7.7e-06 Score=78.34 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+.++.|+|.+|.++|+|++|+..+++|++++|+++.+|+.+|.++..+|++++|++.|++++++.|++
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence 45677777777777777777777777777777777777777777777777777777777777766554
No 82
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=2.4e-05 Score=66.29 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
...++.++|.++..+|+|++|+..++++++.+|+++.+++.+|.++..+|++++|++.|+++++++|++....
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 3668999999999999999999999999999999999999999999999999999999999999999987443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.14 E-value=1e-05 Score=78.62 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICP-SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p-~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+..+.++|.++++.|+|++|+..++++++++| .++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 77 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN 77 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH
Confidence 46788888888888888888888888888887 78888888888888888888888888888888888753
No 84
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.12 E-value=1.3e-05 Score=85.39 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211 11 VATLYVNRASVLQKRDH-LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~-~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
.+.+|.||+.++..+|+ +++|+..+++||+++|+++.+|+.+|.++..+|++++|+..|+++++++|++....
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~ 203 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW 203 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHH
Confidence 57789999999999997 99999999999999999999999999999999999999999999999999987543
No 85
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.12 E-value=2e-05 Score=65.78 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDH---LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES 87 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~---~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 87 (665)
.+.++..+|.+++..+. .++|..-+++||++||+++++++-+|..++..|+|++|+..++++++.+|.+..+..+.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~ 84 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIE 84 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 45668888999976665 799999999999999999999999999999999999999999999999998555555555
Q ss_pred HHHHH
Q 048211 88 ELKII 92 (665)
Q Consensus 88 ~l~~~ 92 (665)
.+...
T Consensus 85 ~I~~A 89 (93)
T 3bee_A 85 SINKA 89 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 86
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=1.1e-05 Score=70.34 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA---KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~---ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..+.++|.++++.|+|++|+..++++++.+|+++ .+++.+|.++..+|+|++|+..|+++++..|++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 3578899999999999999999999999999987 8999999999999999999999999999999873
No 87
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.10 E-value=3.5e-05 Score=65.94 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++.+.|.++...|++++|+..+.++++.+|+++.+++.+|.++...|++++|+..|+++++..|++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 4678889999999999999999999999999999999999999999999999999999999999988765
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.06 E-value=5.2e-06 Score=80.81 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH--------------------------
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPS--YAKAWYRRGKVNVSLENH-------------------------- 62 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~--~~ka~~r~a~~~~~l~~~-------------------------- 62 (665)
++.+|.++|.++..+|+|++|+..+++|++++|+ ++.+|+.+|.++..+|+.
T Consensus 116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (228)
T 4i17_A 116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAA 195 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999 999999999999999998
Q ss_pred -HHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048211 63 -DDAVHDLTIAKNRESSLAGKKQIESELK 90 (665)
Q Consensus 63 -~~A~~~~~~al~l~p~~~~~~~~~~~l~ 90 (665)
++|+..|+++++++|++.....+...++
T Consensus 196 ~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 196 FKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 9999999999999999986555554443
No 89
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.05 E-value=2.3e-05 Score=79.61 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+..+.++|.++++.|+|++|+..+++|++.+|+++.+|+.+|.++..+|+|++|+.+|+++++++|++..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999863
No 90
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.05 E-value=2e-06 Score=63.46 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=35.3
Q ss_pred ccccccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCc
Q 048211 159 HCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPM 206 (665)
Q Consensus 159 ~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~ 206 (665)
......|..|.++ .+.+|++|..+.|||.+||..+|.. |+.+|.
T Consensus 6 ~~~~~~C~~C~~~---~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C~ 49 (52)
T 2jw6_A 6 ERKEQSCVNCGRE---AMSECTGCHKVNYCSTFCQRKDWKD-HQHICG 49 (52)
T ss_dssp -----CCSSSSSS---CSEECTTTCSSEESSHHHHHHHTTT-GGGTTT
T ss_pred cccCCcCCCCCCC---CcCcCCCCCCEeecCHHHHHHHHHH-HCHHHc
Confidence 3456789999985 4789999999999999999999985 888885
No 91
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.05 E-value=5.6e-05 Score=65.17 Aligned_cols=72 Identities=31% Similarity=0.399 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.++.++|.++..+|++++|+..+.++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++...
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 116 (131)
T 2vyi_A 45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999987643
No 92
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.03 E-value=2.3e-06 Score=65.07 Aligned_cols=43 Identities=16% Similarity=0.443 Sum_probs=37.6
Q ss_pred ccccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCcc
Q 048211 161 RETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPME 207 (665)
Q Consensus 161 ~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~~ 207 (665)
....|..|.+. .+.+|++|..++|||++||..+|. .|+.+|..
T Consensus 14 ~~~~C~~C~~~---~~~~Cs~C~~v~YCs~~CQ~~~W~-~Hk~~C~~ 56 (60)
T 2dj8_A 14 SSESCWNCGRK---ASETCSGCNTARYCGSFCQHKDWE-KHHHICSG 56 (60)
T ss_dssp CSCCCSSSCSC---CCEECTTTSCCEESSHHHHHHTHH-HHTTTSCC
T ss_pred CCcccccCCCC---CcccCCCCCCEeeeCHHHHHHHHH-HHHHHHHh
Confidence 45789999984 478999999999999999999998 58888865
No 93
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.03 E-value=3.7e-05 Score=69.88 Aligned_cols=72 Identities=18% Similarity=0.094 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
..+..+.++|.+++..|+|++|+..+.++++.+|+++.+|+.+|.++..+|+|++|+..|+++++++|++..
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 82 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 82 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 478899999999999999999999999999999999999999999999999999999999999999998753
No 94
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=98.02 E-value=3.5e-06 Score=91.58 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=61.6
Q ss_pred cHHHHHHHHhhhhcceeeccccccCCCCCCCCCCCCCccccccceeEEEeccccccccCCCcCCc---EEEEe-------
Q 048211 327 SVSQVVILISQIRVNSLAIVRMNSNNYGQSDHVSSGSTCTVEQVRVGLAIYTAGSLFNHSCLPNI---HAYFL------- 396 (665)
Q Consensus 327 ~~~~l~~~~~~l~~Na~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~g~glyp~~Sl~NHSC~PN~---~~~f~------- 396 (665)
+.....-..+.+...+|.+.. ..+.+|.|.+-|+||||.||+ .+.++
T Consensus 160 t~~~f~wA~~~v~SRaf~~~~-----------------------~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~ 216 (440)
T 2h21_A 160 TLDDFFWAFGILRSRAFSRLR-----------------------NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFS 216 (440)
T ss_dssp CHHHHHHHHHHHHHHCBCCC--------------------------CCBCCSSTTSCEECTTCCCCCCEEEC--------
T ss_pred CHHHHHHHHHHhcccceeccC-----------------------CCceEEeechHhhcCCCCcccccceeeecCcccccC
Confidence 455555566667777775421 124689999999999999974 33332
Q ss_pred -CCEEEEEEeecCCCCCceeeecCCCCCCCCHHHHHHHhhcCCCeeee
Q 048211 397 -SRTLMIRTTEFVPSGYPLELSYGPQVGQWDCKDRLKFLEDEYSFRCQ 443 (665)
Q Consensus 397 -g~~~~vrA~r~I~~GeeI~isY~~~~~~~~~~~Rr~~L~~~y~F~C~ 443 (665)
++.++++|.++|++||||+||||+. .+. ..|...|+|...
T Consensus 217 ~~~~~~l~a~~~i~~Geei~~sYG~~---~~N----~~LL~~YGFv~~ 257 (440)
T 2h21_A 217 WDYLFSLKSPLSVKAGEQVYIQYDLN---KSN----AELALDYGFIEP 257 (440)
T ss_dssp --CEEEEEESSCBCTTSBCEECSCTT---CCH----HHHHHHSSCCCS
T ss_pred CCceEEEEECCCCCCCCEEEEeCCCC---CCH----HHHHHhCCCCcC
Confidence 3579999999999999999999974 132 345568999854
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.01 E-value=2.3e-05 Score=75.53 Aligned_cols=71 Identities=7% Similarity=-0.012 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYR----------------RGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r----------------~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
+..+.++|..+++.|+|++|+..++++++.+|+++.+|+. +|.++..+|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCChHHH
Q 048211 76 ESSLAGK 82 (665)
Q Consensus 76 ~p~~~~~ 82 (665)
+|++...
T Consensus 84 ~p~~~~~ 90 (208)
T 3urz_A 84 APNNVDC 90 (208)
T ss_dssp CTTCHHH
T ss_pred CCCCHHH
Confidence 9998643
No 96
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.00 E-value=3.1e-05 Score=80.82 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---------------AKAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---------------~ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
..+.++.++|.+|+++|+|++|+..+++|++++|++ +.+|+++|.++..+|+|++|+..|+++++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998 69999999999999999999999999999
Q ss_pred cCCChHH
Q 048211 75 RESSLAG 81 (665)
Q Consensus 75 l~p~~~~ 81 (665)
++|++..
T Consensus 225 ~~p~~~~ 231 (336)
T 1p5q_A 225 LDSNNEK 231 (336)
T ss_dssp HCTTCHH
T ss_pred hCCCcHH
Confidence 9999863
No 97
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.00 E-value=3.3e-05 Score=82.86 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=77.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211 4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
.|.+......++.+++.++.++|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++....
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 34445556789999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred HHHHHHHHHH
Q 048211 84 QIESELKIIL 93 (665)
Q Consensus 84 ~~~~~l~~~~ 93 (665)
.....+...+
T Consensus 367 ~~l~~~~~~~ 376 (450)
T 2y4t_A 367 EGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5554444443
No 98
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.7e-05 Score=76.18 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=66.4
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+..+.++.++|.+++.+|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 208 (258)
T 3uq3_A 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999999999998753
No 99
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.96 E-value=4e-05 Score=78.28 Aligned_cols=75 Identities=11% Similarity=-0.028 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCChHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDA-VHDLTIAKNRESSLAGKKQI 85 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A-~~~~~~al~l~p~~~~~~~~ 85 (665)
.+.++.|+|.++.++|+|++|+..+++|++++|+++.+|+++|.++..+|++.++ .+.++++++++|++..+..+
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 3456777888888888888888888888888888888888888888888887654 46667777788877655443
No 100
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.94 E-value=3.5e-05 Score=84.06 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---------------AKAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---------------~ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
..+.++.++|.+|+++|+|++|+..+++|++++|++ ..+|+++|.|+..+|+|++|+.+|+++++
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999998 79999999999999999999999999999
Q ss_pred cCCChHH
Q 048211 75 RESSLAG 81 (665)
Q Consensus 75 l~p~~~~ 81 (665)
++|++..
T Consensus 346 ~~p~~~~ 352 (457)
T 1kt0_A 346 LDSANEK 352 (457)
T ss_dssp HSTTCHH
T ss_pred cCCccHH
Confidence 9999863
No 101
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.94 E-value=5.5e-05 Score=74.96 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=70.3
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+.+..+.++.++|.+|+.+|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 112 (275)
T 1xnf_A 38 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH
Confidence 345678999999999999999999999999999999999999999999999999999999999999999998753
No 102
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.94 E-value=0.0001 Score=62.86 Aligned_cols=71 Identities=21% Similarity=0.312 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
..++.++|.++.+.|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++...
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 113 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999988643
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.93 E-value=3e-05 Score=74.14 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA----------------KAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~----------------ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
.+.++.|+|.+|+.+|+|++|+..+++++++.|++. .+|+.+|.++..+|++++|++.|+++++
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999888766 9999999999999999999999999999
Q ss_pred cCCChH
Q 048211 75 RESSLA 80 (665)
Q Consensus 75 l~p~~~ 80 (665)
++|++.
T Consensus 150 ~~p~~~ 155 (213)
T 1hh8_A 150 MKSEPR 155 (213)
T ss_dssp TCCSGG
T ss_pred cCcccc
Confidence 999864
No 104
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=7e-05 Score=66.52 Aligned_cols=73 Identities=15% Similarity=0.096 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+..+..+.++|..++..|+|++|+..++++++.+|++ +.+|+.+|.++..+|+|++|+..++++++++|++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 3467889999999999999999999999999999997 899999999999999999999999999999998753
No 105
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.89 E-value=0.0001 Score=62.65 Aligned_cols=82 Identities=7% Similarity=-0.135 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQIC-------PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~-------p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
.+.-....|..+++.++|..|+.++..|++.. +..+..+...|.|+.++|+++.|+..++++++++|++....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34556789999999999999999999999873 24578899999999999999999999999999999987543
Q ss_pred HHHHHHHHH
Q 048211 84 QIESELKII 92 (665)
Q Consensus 84 ~~~~~l~~~ 92 (665)
.-..-++.+
T Consensus 84 ~n~~~~~~~ 92 (104)
T 2v5f_A 84 GNLKYFEYI 92 (104)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 333334443
No 106
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.89 E-value=9e-05 Score=70.39 Aligned_cols=72 Identities=7% Similarity=-0.007 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA----------------KAWYRRGKVNVSLENHDDAVHDLTIAK 73 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~----------------ka~~r~a~~~~~l~~~~~A~~~~~~al 73 (665)
..+..+.++|..+++.|+|++|+..+.+|+++.|.++ .+|+.+|.++..+|+|++|+..+++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3678899999999999999999999999999998887 899999999999999999999999999
Q ss_pred hcCCChHH
Q 048211 74 NRESSLAG 81 (665)
Q Consensus 74 ~l~p~~~~ 81 (665)
+++|++..
T Consensus 116 ~~~p~~~~ 123 (198)
T 2fbn_A 116 KIDKNNVK 123 (198)
T ss_dssp HHSTTCHH
T ss_pred HhCcccHH
Confidence 99998753
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.87 E-value=4.9e-05 Score=74.08 Aligned_cols=70 Identities=4% Similarity=-0.153 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+..+.++|..+++.|+|++|+..++++++.+|+. +.+++.+|.++..+|+|++|++.|+++++..|++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 5678899999999999999999999999998875 489999999999999999999999999999998753
No 108
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.86 E-value=3.3e-05 Score=66.78 Aligned_cols=69 Identities=10% Similarity=-0.002 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+..+.+.|..++..|+|++|+..+.++++.+|.++.+++.+|.++..+|++++|+..|++++++.|++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 467889999999999999999999999999999999999999999999999999999999999987654
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.85 E-value=3.4e-05 Score=88.62 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.++.++|.+|+++|+|++|+..+++|++++|+++.+|+.+|.++..+|+|++|++.|+++++++|++...
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 503 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAP 503 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 456899999999999999999999999999999999999999999999999999999999999999998643
No 110
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.83 E-value=8.2e-05 Score=73.93 Aligned_cols=73 Identities=7% Similarity=-0.119 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
..+..+.++|..+++.|+|++|+..++++++.+|++ +.+++.+|.++..+|+|++|+..|++++++.|++...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 356789999999999999999999999999999998 9999999999999999999999999999999976533
No 111
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.83 E-value=2.6e-05 Score=77.40 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQIC--PSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~--p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
++.++|.+|+.+|+|++|+..++++++.. |.. +.+|+.+|.++..+|++++|++.|+++++++|++.
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 108 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL 108 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence 46677777777777777777777777732 122 45577777777777777777777777777777654
No 112
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.81 E-value=0.00011 Score=68.14 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=74.2
Q ss_pred HHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 048211 11 VATLYVNRASV-LQKRDHL--VECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIES 87 (665)
Q Consensus 11 ~a~~~~NRa~~-~~~l~~~--~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 87 (665)
.+.++.++|.+ ++..|++ ++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++.....+..
T Consensus 77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 35688999999 8899999 99999999999999999999999999999999999999999999999999876666666
Q ss_pred HHHHHH
Q 048211 88 ELKIIL 93 (665)
Q Consensus 88 ~l~~~~ 93 (665)
.+....
T Consensus 157 ~i~~~~ 162 (177)
T 2e2e_A 157 SINMAK 162 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 113
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00015 Score=70.88 Aligned_cols=73 Identities=27% Similarity=0.469 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CChHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE------SSLAGKK 83 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~------p~~~~~~ 83 (665)
.+.++.++|.+|.++|++++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++ |++....
T Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~ 250 (258)
T 3uq3_A 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999998 7776443
No 114
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=97.80 E-value=7.9e-06 Score=62.09 Aligned_cols=45 Identities=16% Similarity=0.401 Sum_probs=37.9
Q ss_pred ccccccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCcc
Q 048211 159 HCRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPME 207 (665)
Q Consensus 159 ~~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~~ 207 (665)
......|..|.+. .+.+|++|..++|||.+||..+|. .|+.+|..
T Consensus 10 ~~~~~~C~~C~~~---~~~~Cs~C~~v~YCs~~CQ~~dW~-~Hk~~C~~ 54 (60)
T 2od1_A 10 SDSSESCWNCGRK---ASETCSGCNTARYCGSFCQHKDWE-KHHHICGQ 54 (60)
T ss_dssp -CCSSCCTTTSSC---CCEECTTTSCCEESSHHHHHHHHH-HHTTTSSC
T ss_pred CCCCCccccCCCc---ccccCCCCCCeeecCHHHHHHHHH-HHhHHHcc
Confidence 3456789999984 478999999999999999999998 58888864
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.80 E-value=0.0001 Score=71.71 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAK---AWYRRGKVNVSLENH 62 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~k---a~~r~a~~~~~l~~~ 62 (665)
.....++.++|.+|+++|+|++|+..++++++.+|+++. +++.+|.++..++..
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence 345678999999999999999999999999999998764 899999999887753
No 116
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.80 E-value=7.1e-05 Score=74.39 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCChHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPS---YAKAWYRRGKVNVSL----------ENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~---~~ka~~r~a~~~~~l----------~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+.++|.+|+++|+|++|+..++++++.+|+ .+++++++|.++..+ |++++|+..|+++++..|++..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 489999999999999999999999999998 578999999999988 9999999999999999999865
Q ss_pred HHHHHHHHHHH
Q 048211 82 KKQIESELKII 92 (665)
Q Consensus 82 ~~~~~~~l~~~ 92 (665)
.......+..+
T Consensus 231 ~~~a~~~l~~~ 241 (261)
T 3qky_A 231 LRTAEELYTRA 241 (261)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 117
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=97.76 E-value=7.2e-06 Score=64.23 Aligned_cols=42 Identities=24% Similarity=0.611 Sum_probs=37.1
Q ss_pred cccccccccccccCCcCCCCCCCccccchHHHHhhhccccccCCcc
Q 048211 162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGGQVFKNCPME 207 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~~~H~~eC~~ 207 (665)
...|..|.+. .+.+|++|..++|||.+||..+|.. |+.+|..
T Consensus 15 ~~~C~~C~~~---~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C~~ 56 (70)
T 2d8q_A 15 RPRCAYCSAE---ASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVL 56 (70)
T ss_dssp CCBCSSSCCB---CCCBCTTTSCCBCSCHHHHHHTHHH-HHHHCCC
T ss_pred CCcCCCCCCc---ccccCCCCCCEeeCCHHHhHHHHHH-HHHHHHH
Confidence 5689999985 4789999999999999999999987 8888864
No 118
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.76 E-value=8.3e-05 Score=73.65 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.++.++|.+|..+|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999863
No 119
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.76 E-value=7.2e-05 Score=81.98 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKR--------DHLVECLRDCNRAVQICP---SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l--------~~~~~al~d~~~al~~~p---~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+.+|.|+|.+|..+ |+|++|+..+++|++++| +++.+|+.+|.++..+|+|++|++.|+++++++|++
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 467899999999999 999999999999999999 999999999999999999999999999999999998
Q ss_pred HH
Q 048211 80 AG 81 (665)
Q Consensus 80 ~~ 81 (665)
..
T Consensus 292 ~~ 293 (474)
T 4abn_A 292 PE 293 (474)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.75 E-value=0.00012 Score=63.17 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..++.+.+.++...|++++|+..++++++.+|+.+.+++.+|.++...|++++|+..++++++..|++.
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 567889999999999999999999999999999999999999999999999999999999999998765
No 121
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.73 E-value=0.00012 Score=76.15 Aligned_cols=78 Identities=14% Similarity=0.048 Sum_probs=69.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.|.++...+..+.++|.++++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 133 (368)
T 1fch_A 56 EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 133 (368)
T ss_dssp CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH
Confidence 333333345668899999999999999999999999999999999999999999999999999999999999998764
No 122
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.73 E-value=0.00013 Score=66.33 Aligned_cols=84 Identities=10% Similarity=0.007 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211 11 VATLYVNRASVLQKRD---HLVECLRDCNRAVQIC-P-SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI 85 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~---~~~~al~d~~~al~~~-p-~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 85 (665)
...+.+|-|.++.+.+ +.++++.-++.+++.+ | +..+++|.+|.+++++|+|+.|++.++++++++|+|.....+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4577899999999998 6789999999999998 7 578999999999999999999999999999999999877777
Q ss_pred HHHHHHHHh
Q 048211 86 ESELKIILD 94 (665)
Q Consensus 86 ~~~l~~~~~ 94 (665)
++.++..+.
T Consensus 111 k~~ie~~~~ 119 (152)
T 1pc2_A 111 ERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766665543
No 123
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.67 E-value=9.3e-05 Score=75.27 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.++.++|.+|.++|++++|+..++++++++|+++.+|+.+|.++..+|++++|++.|+++++++|++...
T Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999998743
No 124
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.66 E-value=0.00011 Score=77.69 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQ----------------ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN 74 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~----------------~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~ 74 (665)
.+..+.++|..+++.|+|++|+..+++|++ ++|.++.+|+++|.++..+|+|++|++.++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 577899999999999999999999999999 7788899999999999999999999999999999
Q ss_pred cCCChHH
Q 048211 75 RESSLAG 81 (665)
Q Consensus 75 l~p~~~~ 81 (665)
++|++..
T Consensus 302 ~~p~~~~ 308 (370)
T 1ihg_A 302 IDPSNTK 308 (370)
T ss_dssp TCTTCHH
T ss_pred hCchhHH
Confidence 9998753
No 125
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.66 E-value=0.00026 Score=73.73 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.++.++|.+|.++|++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 282 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 46688999999999999999999999999999999999999999999999999999999999999998753
No 126
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.66 E-value=0.00034 Score=66.60 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+..+.++.++|.+++..|++++|+..+.++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 77 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE 77 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999998753
No 127
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.65 E-value=0.0002 Score=74.54 Aligned_cols=72 Identities=17% Similarity=0.031 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
..+..+.++|.++++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 134 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK 134 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 345568999999999999999999999999999999999999999999999999999999999999998753
No 128
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.64 E-value=0.00011 Score=80.66 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
...+..+.++|..+++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++...
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 95 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999997643
No 129
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.64 E-value=0.00012 Score=70.95 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
..++.++|.++.++|++++|+..++++++.+|+++.+++.+|.++..+|++++|++.|+++++.+|++..
T Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 194 (243)
T 2q7f_A 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194 (243)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 5578899999999999999999999999999999999999999999999999999999999999988754
No 130
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.64 E-value=8e-05 Score=81.62 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 10 LVATLYVNRASVLQKRDHL-VECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~-~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
..+.++.++|.+|+.+|+| ++|++.+++|++++|+++.+|+.+|.++..+|++++|++.|+++++++|+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4678899999999999999 99999999999999999999999999999999999999999999999998
No 131
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.64 E-value=0.00033 Score=66.71 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRES-SLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p-~~~~ 81 (665)
...++.++|.++.++|++++|+..+.++++.+|+++.+++.+|.++..+|++++|++.+++++++.| ++..
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 4567778888888888888888888888888888888888888888888888888888888888877 6543
No 132
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00013 Score=79.33 Aligned_cols=68 Identities=22% Similarity=0.342 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+.++.++|.+|+++|+|++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|.+
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 106 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN 106 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 45666677777777777777777777777777777777777777777777777777777777666643
No 133
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.63 E-value=0.00025 Score=79.32 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.++.++|.+|.++|+|++|++.+++|++++|+++.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 90 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 4455555555555555555555555555555555555555555555555555555555555555544
No 134
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.62 E-value=0.00034 Score=60.23 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.++.+.|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..++++++..|++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch
Confidence 46889999999999999999999999999999999999999999999999999999999999998865
No 135
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.62 E-value=4.1e-05 Score=70.23 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=53.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCChH
Q 048211 23 QKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENH----------DDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 23 ~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~----------~~A~~~~~~al~l~p~~~ 80 (665)
-+++.|++|+..+++|++++|+++.+|++.|.++..++++ ++|+..|++|++++|++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 4667899999999999999999999999999999999875 599999999999999975
No 136
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.62 E-value=0.00047 Score=63.16 Aligned_cols=69 Identities=14% Similarity=0.013 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..++.++|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|++.++++++..|++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 110 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF 110 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH
Confidence 566777888888888888888888888888888888888888888888888888888888888777654
No 137
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=1.4e-05 Score=67.51 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTI 71 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~ 71 (665)
.+.++.|+|.+|+++|+|++|+..++++++++|++ +++++++|.++..+|++++|++.+++
T Consensus 37 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 37 NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 36789999999999999999999999999999998 99999999999999998888766553
No 138
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.60 E-value=7.6e-05 Score=85.73 Aligned_cols=71 Identities=8% Similarity=-0.043 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.+|.|+|.+|+++|+|++|+..+++|++++|+++.+|+.+|.++..+|+|++ ++.|+++++++|++...
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a 536 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISA 536 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH
Confidence 467899999999999999999999999999999999999999999999999999 99999999999998743
No 139
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.58 E-value=0.00043 Score=71.75 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.++.++|.+|.++|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 286 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999998753
No 140
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.57 E-value=0.00037 Score=68.12 Aligned_cols=74 Identities=19% Similarity=0.076 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+...+.++.++|.+++..|++++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 106 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR 106 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH
Confidence 34458999999999999999999999999999999999999999999999999999999999999999998753
No 141
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.57 E-value=0.00018 Score=75.66 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+.++..++.++++.|++++|+..++.+++.+|.++.+|+.+|.++...|++++|++.|+++++++|++.
T Consensus 33 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (388)
T 1w3b_A 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI 101 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH
Confidence 455677888888888888888888888888888888888888888888888888888888888888765
No 142
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.56 E-value=0.00063 Score=62.31 Aligned_cols=74 Identities=8% Similarity=-0.012 Sum_probs=68.4
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
....+.++.++|.+++..|++++|+..++++++.+|+++.+++.+|.++...|++++|++.+++++++.|++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 77 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK 77 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999988653
No 143
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.56 E-value=7.2e-05 Score=69.70 Aligned_cols=66 Identities=9% Similarity=-0.027 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++|..+++.|++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+| +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~ 73 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN 73 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence 4678999999999999999999999999999999999999999999999999999999999999 54
No 144
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.56 E-value=0.00028 Score=78.87 Aligned_cols=72 Identities=11% Similarity=-0.063 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.++.|+|.+|..+|++++|++.+++|++++|+++.+|+.+|.++..+|++++|++.|+++++++|++...
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 127 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998643
No 145
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.56 E-value=0.0005 Score=70.50 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+..+.+.|.+++..|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 72 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA 72 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch
Confidence 5678999999999999999999999999999999999999999999999999999999999999998763
No 146
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.55 E-value=0.00066 Score=66.29 Aligned_cols=70 Identities=6% Similarity=-0.038 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++.++|.+|.++|++++|+..+.++++.+|.++.+++.+|.++..+|++++|+..|+++++..|++.
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 4566777777777777777777777777777777777777777777777777777777777777776654
No 147
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=97.55 E-value=6e-05 Score=68.81 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=38.3
Q ss_pred ccccccCCCcC---CcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211 379 AGSLFNHSCLP---NIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 379 ~~Sl~NHSC~P---N~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
-+.++||+|.+ |+...-.++++.++|+|+|++||||++.|++.|
T Consensus 97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~Yg~~y 143 (151)
T 3db5_A 97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDY 143 (151)
T ss_dssp GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC--
T ss_pred ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEecCHHH
Confidence 35689999965 998888899999999999999999999999875
No 148
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.54 E-value=6.6e-05 Score=82.40 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.++.++|.+++++|+|++|++.+++|++++|+++.+|+.+|.++..+|+|++|++.|+++++++|++..
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 75 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence 56677888999999999999999999999999999999999999999999999999999999999998753
No 149
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.53 E-value=0.00064 Score=65.69 Aligned_cols=70 Identities=10% Similarity=-0.008 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+.+..|.++|.+++..|+|++|+..++++++.+|+++.+++.+|.++..+|++++|++.|+++++++|++
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 90 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA 90 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444455555555555555555555555555555555555555555555555555555555555554443
No 150
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.52 E-value=5.9e-05 Score=65.13 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=50.7
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 24 KRDHLVECLRDCNRAVQI---CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 24 ~l~~~~~al~d~~~al~~---~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+|++++|+..+++|+++ +|+++.+|+.+|.++..+|+|++|++.|+++++++|++..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 62 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 478999999999999999 6889999999999999999999999999999999999864
No 151
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.50 E-value=0.00042 Score=77.22 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.+|.+++.+|.+.|++++|++.++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++...
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999998744
No 152
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.49 E-value=0.00062 Score=72.81 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
+..+..+..+|.+|++.|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 94 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT 94 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 346777888888888888888888888888888888888888888888888888888888888888888765
No 153
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.48 E-value=0.00015 Score=75.56 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA-----------------KAWYRRGKVNVSLENHDDAVHDLTIAK 73 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-----------------ka~~r~a~~~~~l~~~~~A~~~~~~al 73 (665)
.+..+.++|..+++.|+|++|+..+.+|++++|+++ .+|+++|.++..+|+|++|+..|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 678899999999999999999999999999999877 499999999999999999999999999
Q ss_pred hcCCChHH
Q 048211 74 NRESSLAG 81 (665)
Q Consensus 74 ~l~p~~~~ 81 (665)
+++|++..
T Consensus 258 ~~~p~~~~ 265 (338)
T 2if4_A 258 TEEEKNPK 265 (338)
T ss_dssp HHCTTCHH
T ss_pred HhCCCCHH
Confidence 99998763
No 154
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.47 E-value=0.00052 Score=72.12 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
...++.+++.++..+|++++|+..+.++++++|+++.++..+|.++..+|++++|++.|+++++++|++..
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 272 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 35678888889999999999999999999998888888888999999999999999999998888887653
No 155
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.42 E-value=0.00056 Score=73.80 Aligned_cols=81 Identities=9% Similarity=0.079 Sum_probs=69.5
Q ss_pred hHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHHHH
Q 048211 581 LLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQRE 659 (665)
Q Consensus 581 ~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~~~ 659 (665)
.|.+++. .....+...++.+|+.||.++.-+..||.++...|+.++| .++.||.+|....||++||.+...+-+|-..
T Consensus 313 ~~~eA~~-~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 313 SPSELLE-ICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp CHHHHHH-HHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555553 4445566778999999999999999999999999999999 9999999999999999999999888888766
Q ss_pred Hhc
Q 048211 660 ALK 662 (665)
Q Consensus 660 ~~~ 662 (665)
+..
T Consensus 392 ~~~ 394 (433)
T 3qww_A 392 YMG 394 (433)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 156
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.42 E-value=0.0008 Score=68.10 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
...++.++|.+|.++|++++|+..+.++++.+|+++.+|..+|.++..+|++++|+..|++++++.|++.
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 240 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 3566777888888888888888888888888888888888888888888888888888888888777754
No 157
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=97.41 E-value=0.00011 Score=68.07 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=38.3
Q ss_pred ccccccCCCc---CCcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211 379 AGSLFNHSCL---PNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 379 ~~Sl~NHSC~---PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
.+.++||+|. +|+...-.++++.++|+|+|++||||++.|++.|
T Consensus 101 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvwYg~~y 147 (170)
T 3ep0_A 101 WMTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSH 147 (170)
T ss_dssp GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC--
T ss_pred eeeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEeeCHHH
Confidence 3468999996 8998888899999999999999999999999876
No 158
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.38 E-value=0.00033 Score=76.82 Aligned_cols=69 Identities=26% Similarity=0.354 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++.++|.+|+++|+|++|++.++++++++|+++++|+++|.++..+|++++|+..|+ ++.++|+..
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~ 126 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD 126 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC------
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence 467899999999999999999999999999999999999999999999999999999996 888888754
No 159
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.37 E-value=0.0004 Score=70.53 Aligned_cols=71 Identities=8% Similarity=0.170 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA-------KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-------ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.++.|+|.+|.++|+|++|+..++++++++|++. .+|+++|.++..+|++++|+..|+++++++|+...
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 467899999999999999999999999999988753 27899999999999999999999999999998653
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.37 E-value=0.00065 Score=68.56 Aligned_cols=71 Identities=13% Similarity=-0.023 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQIC--PS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~--p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
...++++.+.++.++|++++|+..+++|+..+ |. ++.+++++|.|+..+|+.++|...|++++..+|+ ...
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 35689999999999999999999999998654 55 6789999999999999999999999999999998 543
No 161
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.37 E-value=0.0003 Score=71.39 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
....+.++|..+++.|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|++++..+|+..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 3456889999999999999999999999999999999999999999999999999999999999999654
No 162
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.36 E-value=0.00095 Score=67.54 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=69.0
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
++......+.++|..++..|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 90 (327)
T 3cv0_A 16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 90 (327)
T ss_dssp CGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHH
Confidence 344456678899999999999999999999999999999999999999999999999999999999999998753
No 163
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.36 E-value=0.00088 Score=73.44 Aligned_cols=83 Identities=10% Similarity=0.115 Sum_probs=72.0
Q ss_pred HHhHHHHHHHhhhHHHHHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHHhhCCCCcchhhhHHHHH
Q 048211 579 LGLLRSILHAYNKSIAEILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLHYFGSHAETMFPHLLFLQ 657 (665)
Q Consensus 579 l~~~~~~l~~~~~~~~~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~~~G~~~~~~~~~~~~l~ 657 (665)
.++|.+++. .....+...++.+|+.||.++.-+..||.++...|+.++| .++.||.+|....||++||.+...+-+|=
T Consensus 322 qg~~~eA~~-l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 322 EGLYHEVVK-LCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTCHHHHHH-HHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 355666664 4555677888999999999999999999999999999999 99999999999999999999999888887
Q ss_pred HHHhc
Q 048211 658 REALK 662 (665)
Q Consensus 658 ~~~~~ 662 (665)
..+..
T Consensus 401 ~~~~~ 405 (490)
T 3n71_A 401 LTNWH 405 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 164
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.34 E-value=0.00037 Score=70.64 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLE-NHDDAVHDLTIAKNR 75 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~-~~~~A~~~~~~al~l 75 (665)
+....+.+|.|.|.+|+++|+|++|+..+++|+++.+.. +.+|+++|.++..+| .+++|++.|++|+.+
T Consensus 191 ~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999986332 789999999999999 579999999999876
No 165
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00084 Score=72.88 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 12 ATLYVNRASVLQK---RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 12 a~~~~NRa~~~~~---l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
+.++.++|.+++. +|++++|+..++++++.+|+++.+++.+|.++..+|++++|++.|+++++++|++.......
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4489999999999 99999999999999999999999999999999999999999999999999999987654433
No 166
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.30 E-value=0.00047 Score=69.97 Aligned_cols=70 Identities=7% Similarity=-0.017 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKR-DHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l-~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++.|.|.+|..+ |++++|+..+++|+++.|.. +.+|.++|.++..+|+|++|++.|++++++.|++.
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 577899999999995 99999999999999997653 57799999999999999999999999999988764
No 167
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.27 E-value=0.00039 Score=68.77 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 12 ATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 12 a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
...+.++|.+++..|+|++|+..++++++.+|+++.+|+.+|.++..+|++++|++.|+++++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 66 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK 66 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999999999999999999999999999999999993
No 168
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.26 E-value=0.0005 Score=63.86 Aligned_cols=56 Identities=7% Similarity=-0.041 Sum_probs=50.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 24 KRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 24 ~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+.+...+|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 33344568999999999999999999999999999999999999999999999874
No 169
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.24 E-value=0.0008 Score=68.42 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 25 RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 25 l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.|++++|+.-++++++.+|+++.+|+.+|.++..+|++++|++.|+++++++|++..
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 367777777777777778888888888999999999999999999999999998764
No 170
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.21 E-value=0.0014 Score=66.25 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRD-HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~-~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+.++.++|.++..+| ++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|++++++.|++.
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 159 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH 159 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH
Confidence 3567888888888888 888888888888888888888888888888888888888888888888888753
No 171
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.18 E-value=0.001 Score=65.58 Aligned_cols=69 Identities=23% Similarity=0.183 Sum_probs=63.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI--------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~--------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
+....+.++.+.|.+|..+|++++|+..+.+|+++ +|..+.++..+|.++..+|++++|++.|++++++
T Consensus 80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999998 4667899999999999999999999999999987
No 172
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.15 E-value=0.0017 Score=65.77 Aligned_cols=59 Identities=10% Similarity=-0.039 Sum_probs=49.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 21 VLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 21 ~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+.+.+++++|+..+.++++.+|+++.+++.+|.++...|++++|++.|+++++.+|++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 33344444445666777788899999999999999999999999999999999999987
No 173
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.09 E-value=0.0019 Score=69.57 Aligned_cols=86 Identities=13% Similarity=-0.022 Sum_probs=71.0
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI-----CPSY---AKAWYRRGKVNVSLENHDDAVHDLTIAKNR--- 75 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~-----~p~~---~ka~~r~a~~~~~l~~~~~A~~~~~~al~l--- 75 (665)
+....+..+.|.|.+|..+|+|++|+.-+.++|++ .|++ +..|+++|.+|..+|+|++|+..|++|+++
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999999999999977 3454 467999999999999999999999999873
Q ss_pred --CCChHHHHHHHHHHHHH
Q 048211 76 --ESSLAGKKQIESELKII 92 (665)
Q Consensus 76 --~p~~~~~~~~~~~l~~~ 92 (665)
.|+.....++...+...
T Consensus 404 ~lG~~Hp~~~~~~~~l~~~ 422 (429)
T 3qwp_A 404 THGREHSLIEDLILLLEEC 422 (429)
T ss_dssp HTCTTSHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHH
Confidence 56666555565555444
No 174
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.08 E-value=0.0017 Score=72.69 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCC
Q 048211 11 VATLYVNRASVLQKRDH----------LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE--NHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~----------~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~--~~~~A~~~~~~al~l~p~ 78 (665)
...+|.+|+.++.++++ ++++++.+++|++.+|+++.+|+.|+-++..++ ++++|++.+.++++++|.
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 45677777777777777 777777777777777777777777777777777 557777777777777777
Q ss_pred hHH
Q 048211 79 LAG 81 (665)
Q Consensus 79 ~~~ 81 (665)
|..
T Consensus 142 N~~ 144 (567)
T 1dce_A 142 NFH 144 (567)
T ss_dssp CHH
T ss_pred ccc
Confidence 654
No 175
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.0012 Score=71.03 Aligned_cols=69 Identities=14% Similarity=0.037 Sum_probs=61.2
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI---------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~---------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~ 76 (665)
.+..+.+|.++|.+|..+|+|++|++.+++|+++ +|....+|.++|.++..+|+|++|+..|++++++.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 3446788999999999999999999999999987 57788899999999999999999999999998763
No 176
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.06 E-value=0.0026 Score=68.54 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCChH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQIC--------PSYAKAWYRRGKVNVSLE--NHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~--------p~~~ka~~r~a~~~~~l~--~~~~A~~~~~~al~l~p~~~ 80 (665)
.+..|.|+|.+|+.+|+|++|+..+++|+++. +..+.++..+|.++..+| +|++|++.|+++++++|++.
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 57789999999999999999999999999873 346889999999887765 69999999999999999987
Q ss_pred HH
Q 048211 81 GK 82 (665)
Q Consensus 81 ~~ 82 (665)
..
T Consensus 173 ~~ 174 (472)
T 4g1t_A 173 EF 174 (472)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 177
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.06 E-value=0.00025 Score=58.66 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=51.4
Q ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 12 AT-LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 12 a~-~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+. ++.++|.+|+.+|++++|+..++++++++|+++.++++ +.+.+|+..|+++...+|++
T Consensus 34 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 34 KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 45 89999999999999999999999999999999998754 56777788888777776654
No 178
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.05 E-value=0.0015 Score=55.74 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 29 VECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 29 ~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
++|+..+.++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 54 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV 54 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH
Confidence 36788999999999999999999999999999999999999999999998753
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.04 E-value=0.0017 Score=72.71 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRD--HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE-NHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~--~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~~ 82 (665)
...+|.+|+.++.+++ +|+++++.++++++.||.+..||..|+.++..+| .+++|++.+.++++.+|+|...
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence 5678999999999999 7799999999999999999999999999999999 9999999999999999998754
No 180
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.01 E-value=0.0012 Score=64.98 Aligned_cols=68 Identities=22% Similarity=0.079 Sum_probs=62.8
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI--------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~--------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.+..+.++.|+|.+|+.+|++++|+..+++++++ +|..+.++..+|.++..+|++++|+..|++++++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999 6777899999999999999999999999998876
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.01 E-value=0.0016 Score=57.90 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=46.6
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICP--SY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p--~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
+....+.++.++|.+|+..|+|++|+..+.+++++.+ .+ ..++..+|.++..+|++++|++.+++++++
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 78 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL 78 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455667777777777777777777777777776632 11 346667777777777777777777776665
No 182
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.00 E-value=0.0033 Score=63.49 Aligned_cols=67 Identities=9% Similarity=0.013 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQ---ICPSYA----KAWYRRGKVNVSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~---~~p~~~----ka~~r~a~~~~~l~~~~~A~~~~~~al~l~ 76 (665)
..+.+|.|.|.+|..+|+|++|+..+++|++ ..|+.. .+|+.+|.++..+|+|++|++.+++++++.
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3577999999999999999999999999994 456543 789999999999999999999999998874
No 183
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Probab=96.98 E-value=0.00047 Score=65.26 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=39.0
Q ss_pred ccccccCCCc---CCcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211 379 AGSLFNHSCL---PNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 379 ~~Sl~NHSC~---PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
.+.++||+|. +|+...-.++++.++|+|+|++||||++.|++.|
T Consensus 131 WmRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwYg~~Y 177 (196)
T 3dal_A 131 WMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDF 177 (196)
T ss_dssp GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred eEEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEecCHHH
Confidence 3568999996 7998888899999999999999999999998653
No 184
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.97 E-value=0.0016 Score=68.53 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQ-----IC-PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~-----~~-p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
..+.++.|+|.+|..+|+|++|+..+++|++ .+ |..+.+++.+|.++..+|++++|++.+++++++
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666 34 555566666666666666666666666666554
No 185
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.96 E-value=0.001 Score=67.27 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS------YAKAWYRRGKVNVSLENHDDA-VHDLTIAKNR 75 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~------~~ka~~r~a~~~~~l~~~~~A-~~~~~~al~l 75 (665)
...+.++.|.|.+|.++|+|++|+..+++|+++.+. .+.+|+++|.++..+|++++| ...|++|+.+
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 334589999999999999999999999999988532 278999999999999999999 6779999876
No 186
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.92 E-value=0.0017 Score=68.24 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQ-----ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~-----~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
..+.++.|.|.+|..+|++++|+..+.+|++ .+|..+.+++.+|.++..+|++++|+..+++++++
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555 34444555555555555555555555555555554
No 187
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.92 E-value=0.0013 Score=65.88 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=63.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------------
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI---------------------------------------------- 41 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~---------------------------------------------- 41 (665)
....+.++.++|.+|..+|++++|+..++++++.
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 270 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC 270 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc
Confidence 4557789999999999999999999999999984
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 42 ---CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 42 ---~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
+|..+.+|+.+|.++..+|++++|++.|++++++.|.
T Consensus 271 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 271 KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3566789999999999999999999999999988664
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.91 E-value=0.0024 Score=51.23 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE 60 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~ 60 (665)
.+.++.++|.+|.++|++++|+..++++++++|+++.++..+|.++..+|
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999999999999999999988765
No 189
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.89 E-value=0.0022 Score=65.51 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+.++.|.|.+|.++|+|++|+..+++++++.|.. ..+++.+|.++..+|++++|+..|++++ ++|+.
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 45666777777777777777777777777664322 3456666777777777777777777777 66654
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.88 E-value=0.0016 Score=57.93 Aligned_cols=72 Identities=10% Similarity=0.087 Sum_probs=63.1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA------KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~------ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
....+.++.+.|.+|..+|++++|+..+++++++.+... .+++.+|.++..+|++++|++.+++++++.+..
T Consensus 45 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 45 KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 345678999999999999999999999999999865444 268899999999999999999999999997643
No 191
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.84 E-value=0.0021 Score=65.54 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAK-AWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~k-a~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
.+|.+.+..+.++|++++|...+++|++++|+++. +|...|.++...|++++|+..|+++++.+|..
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 34555555555555555555555555555555544 55555555555555555555555555555443
No 192
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.82 E-value=0.0018 Score=65.48 Aligned_cols=68 Identities=9% Similarity=-0.018 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQI-------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRES 77 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~-------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p 77 (665)
..+.++.|.|.+|..+|+|++|+..+++|++. .+..+.+|+.+|.++..+|+|++|++.+++++++.+
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999953 123467899999999999999999999999998753
No 193
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.78 E-value=0.0059 Score=62.55 Aligned_cols=60 Identities=13% Similarity=-0.010 Sum_probs=45.3
Q ss_pred HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCChHHH
Q 048211 23 QKRDH-LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE--NHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 23 ~~l~~-~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~--~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.+.+. .++|+.-++++|.+||++..+|+.|+.++..++ ++++|++.+..++..+|.+..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a 105 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI 105 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence 34444 467888888888888888888888888888888 7888888888888888877544
No 194
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.75 E-value=0.0035 Score=63.86 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 11 VATLYVNRASVLQ-------KRDHL-------VECLRDCNRAVQ-ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 11 ~a~~~~NRa~~~~-------~l~~~-------~~al~d~~~al~-~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.+.+|.+++..+. ++|++ ++|+..+++|++ ++|+++.+|...|..+..+|++++|.+.|++++++
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 4567888888876 45886 999999999999 79999999999999999999999999999999999
Q ss_pred CCChH
Q 048211 76 ESSLA 80 (665)
Q Consensus 76 ~p~~~ 80 (665)
+|.+.
T Consensus 129 ~p~~~ 133 (308)
T 2ond_A 129 EDIDP 133 (308)
T ss_dssp SSSCT
T ss_pred cccCc
Confidence 99865
No 195
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.74 E-value=0.003 Score=59.14 Aligned_cols=66 Identities=15% Similarity=-0.014 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQ------ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~------~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
..+.++.++|.++..+|+|++|+..+.++++ ..+..+.++..+|.++..+|++++|++.+++++++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777776 44556666777777777777777777777776665
No 196
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.73 E-value=0.0014 Score=66.91 Aligned_cols=71 Identities=18% Similarity=0.114 Sum_probs=59.8
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICP--SY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p--~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
+....+.+|.|.+.+|.++|+|++|+..+++|+++.+ ++ +.+|.++|.++.. |++++|++.|++++.+.+.
T Consensus 71 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~ 147 (307)
T 2ifu_A 71 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN 147 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999998842 22 5788999999988 9999999999999987653
No 197
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.71 E-value=0.0054 Score=62.85 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCChHHH
Q 048211 11 VATLYVNRASVLQKRDHLV--ECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN------HDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~--~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~------~~~A~~~~~~al~l~p~~~~~ 82 (665)
+..++.+|..++.+++.++ ++++.++++++.||.|..||..|+.++..+++ ++++++.+.+++.++|+|...
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~Sa 222 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPST 222 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccH
Confidence 3445666666666666666 66666666666666666666666666666665 666666666666666666533
No 198
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.70 E-value=0.0029 Score=63.32 Aligned_cols=70 Identities=20% Similarity=0.073 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQI--------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRES 77 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~--------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p 77 (665)
....+.++.++|.+|..+|++++|++.+++++++ +|..+.+++.+|.++..+|++++|++.|++++++.+
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3557889999999999999999999999999998 677788999999999999999999999999987643
No 199
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.68 E-value=0.0029 Score=59.18 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=44.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 22 LQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 22 ~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
++..|+|++|.+.+.......+..+.++..+|.++..+|++++|+..|++++.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 55 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ 55 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 467899999999777777787788999999999999999999999999999885
No 200
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.67 E-value=0.011 Score=61.18 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChHHHH
Q 048211 11 VATLYVNRASVLQKRDH--LVECLRDCNRAVQICPSYAKAWYRRGKVNVSLEN-HDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~--~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~~~ 83 (665)
...++.+|+.++.++++ |++++..++++++.||.|..||..|+-++..+|. ++++++.+.++++.+|+|...-
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 56789999999999994 9999999999999999999999999999999999 6999999999999999987543
No 201
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.67 E-value=0.0025 Score=67.15 Aligned_cols=68 Identities=9% Similarity=-0.040 Sum_probs=62.8
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 8 RNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA----KAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 8 ~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~----ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
....+..+.++|..++..|+|++|+..++++++.+|+++ .+|+.+|.++..+|++++|++.|++++++
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999999999986 58999999999999999999999999886
No 202
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=96.65 E-value=0.00096 Score=60.70 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=38.8
Q ss_pred cccccCCCc---CCcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211 380 GSLFNHSCL---PNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 380 ~Sl~NHSC~---PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
+.++||+|. +|+...-.++.+.++|+++|++||||++.|++.|
T Consensus 97 mr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y~~~y 142 (152)
T 3ihx_A 97 MMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASY 142 (152)
T ss_dssp GGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred eeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEechHHH
Confidence 568999998 7998888899999999999999999999998653
No 203
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.58 E-value=0.0062 Score=67.65 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+..++.+|.++|++++|+..++++++.+|+++.+|+.+|.++...|++++|++.|+++++++|++
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 406 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555555555555555555555555555555555555555554
No 204
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.57 E-value=0.0032 Score=65.70 Aligned_cols=69 Identities=12% Similarity=-0.023 Sum_probs=61.2
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA----KAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~----ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
..+..+..+.++|.+++..|+|++|+..++++++.+|+++ .+|+.+|.++..+|++++|+..|++++.+
T Consensus 4 ~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445677889999999999999999999999999999884 67899999999999999999999998876
No 205
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.56 E-value=0.0038 Score=62.78 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
....+..+|..++..|+|++|+..++++++.+|++ +.++..+|.++..+|++++|++.+++++++
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 72 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567778999999999999999999999999988 467889999999999999999999998876
No 206
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.55 E-value=0.0063 Score=63.45 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=66.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048211 4 NDKDRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQICP--SY----AKAWYRRGKVNVSLENHDDAVHDLTIAKNRES 77 (665)
Q Consensus 4 ~~~~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p--~~----~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p 77 (665)
.|.+....+.++.++|.+|+.+|+|++|+..+++|+++.+ ++ +.+++.+|.++..+|++++|+..+++++++.+
T Consensus 39 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 118 (406)
T 3sf4_A 39 GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 118 (406)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4555666789999999999999999999999999999853 34 46899999999999999999999999999876
Q ss_pred Ch
Q 048211 78 SL 79 (665)
Q Consensus 78 ~~ 79 (665)
..
T Consensus 119 ~~ 120 (406)
T 3sf4_A 119 EL 120 (406)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 207
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.50 E-value=0.0063 Score=62.94 Aligned_cols=73 Identities=12% Similarity=-0.069 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhc
Q 048211 11 VATLYVNRASVLQKRDH-LVECLRDCNRAVQICPSYAKAWYRRGKVNVSL--------------ENHDDAVHDLTIAKNR 75 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~-~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l--------------~~~~~A~~~~~~al~l 75 (665)
+..++.+|..++..++. ++++++.++++++.+|.+.-||..|+.++..+ +.++++++.+.+++.+
T Consensus 143 Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 143 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 56789999999999999 69999999999999999999999999999998 5689999999999999
Q ss_pred CCChHHHH
Q 048211 76 ESSLAGKK 83 (665)
Q Consensus 76 ~p~~~~~~ 83 (665)
+|++...-
T Consensus 223 ~P~d~SaW 230 (331)
T 3dss_A 223 DPNDQSAW 230 (331)
T ss_dssp STTCHHHH
T ss_pred CCCCHHHH
Confidence 99998543
No 208
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.45 E-value=0.0087 Score=62.89 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHHHH
Q 048211 605 HIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIFLH 640 (665)
Q Consensus 605 ~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~~ 640 (665)
++..+..+..+|.++...|+.++| .++.+|..+..-
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 456677888899999999999999 999999988743
No 209
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.45 E-value=0.013 Score=60.85 Aligned_cols=75 Identities=12% Similarity=0.038 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCChHHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE-NHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
+....++..+-+...+.+..++|++-++++|++||++..+|+.|+.++..+| .++++++.+..++..+|.+..+-
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW 126 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence 3355666667777777777788888888888888888888888888888888 48888888888888888876543
No 210
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=96.42 E-value=0.0021 Score=62.28 Aligned_cols=44 Identities=18% Similarity=0.091 Sum_probs=39.1
Q ss_pred ccccccCCCc---CCcEEEEeCCEEEEEEeecCCCCCceeeecCCCC
Q 048211 379 AGSLFNHSCL---PNIHAYFLSRTLMIRTTEFVPSGYPLELSYGPQV 422 (665)
Q Consensus 379 ~~Sl~NHSC~---PN~~~~f~g~~~~vrA~r~I~~GeeI~isY~~~~ 422 (665)
-+.++||+|. +|+...-.++.|.++|+|+|++||||++.|++.|
T Consensus 140 WmRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwYg~~Y 186 (237)
T 3ray_A 140 WMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDY 186 (237)
T ss_dssp GGGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred ceeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEeeCHHH
Confidence 4579999996 6988888899999999999999999999998753
No 211
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.41 E-value=0.0046 Score=64.86 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-------YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-------~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
..+.++.++|.+|..+|+++.|+..+.+|+++.+. .+.++..+|.++..+|+|++|++.|++++++
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777766321 2346666677777777777777777776665
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.39 E-value=0.013 Score=61.18 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+.+|.-.+.+++..|++++|+..+++|+.+||+ .-+|.-+|.++...|++++|++.|.+|+.++|....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 4455655666777789999999999999999975 678899999999999999999999999999999763
No 213
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.36 E-value=0.013 Score=51.20 Aligned_cols=84 Identities=10% Similarity=-0.022 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVE---CLRDCNRAVQIC-P-SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQ 84 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~---al~d~~~al~~~-p-~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 84 (665)
....+-+|-|.++.+...-.. +|.-++..+.-+ | ..-+.+|-+|.+++++|+|+.|+..++.+++++|+|.....
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 456778899999999887666 666666666654 4 35578999999999999999999999999999999987777
Q ss_pred HHHHHHHHH
Q 048211 85 IESELKIIL 93 (665)
Q Consensus 85 ~~~~l~~~~ 93 (665)
++..++..+
T Consensus 113 Lk~~i~~~i 121 (126)
T 1nzn_A 113 LERLIDKAM 121 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666554
No 214
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.26 E-value=0.016 Score=57.34 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~ 76 (665)
.+.++.+.|..|+..+++++|+..+.+|++ |+++.+++.+|.++.. .+++++|+..|+++++++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 456788999999999999999999999998 6889999999999999 999999999999999885
No 215
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.19 E-value=0.0089 Score=59.20 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 048211 11 VATLYVNRASVLQK----RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRES 77 (665)
Q Consensus 11 ~a~~~~NRa~~~~~----l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~p 77 (665)
.+.++.|.+.+|.. .+++++|+..+++|++. +++.+++.+|.++.. .+++++|++.|+++++.+|
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 35678899999999 99999999999999988 578999999999999 9999999999999998876
No 216
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.18 E-value=0.035 Score=57.69 Aligned_cols=75 Identities=13% Similarity=0.015 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCChHHHHHH
Q 048211 11 VATLYVNRASVLQKRD-HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL-E-NHDDAVHDLTIAKNRESSLAGKKQI 85 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~-~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l-~-~~~~A~~~~~~al~l~p~~~~~~~~ 85 (665)
...++.+|+.++..++ .++++++.++.+|..+|.+..+|+.|+.++..+ + +++++++.+.++++.+|.|...-.-
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~ 164 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY 164 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5678999999999999 599999999999999999999999999999999 8 9999999999999999999765433
No 217
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.17 E-value=0.039 Score=48.38 Aligned_cols=85 Identities=12% Similarity=-0.067 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHL---VECLRDCNRAVQICPS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI 85 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~---~~al~d~~~al~~~p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 85 (665)
+....-+|-|.++.+...- ..+|.-++..++.+|. .-+-+|-+|.+++++|+|+.|....+.+++++|+|..+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4567788999999998764 5677777778887774 46789999999999999999999999999999999988787
Q ss_pred HHHHHHHHh
Q 048211 86 ESELKIILD 94 (665)
Q Consensus 86 ~~~l~~~~~ 94 (665)
++.++..+.
T Consensus 118 k~~Ie~ki~ 126 (134)
T 3o48_A 118 KSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766554
No 218
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.13 E-value=0.0092 Score=59.91 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSY------AKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
...+.++.+++.+|..+|++++|+..+++++++.+.. ..++..+|.++..+|++++|++.+++++++
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555553221 235555555555555555555555555544
No 219
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.90 E-value=0.092 Score=46.59 Aligned_cols=85 Identities=12% Similarity=-0.067 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHL---VECLRDCNRAVQICPS-YAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKKQI 85 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~---~~al~d~~~al~~~p~-~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 85 (665)
+....-+|-|.++.+...- .+++.-++..+..+|. .-+-+|-+|.+++++|+|+.|....+.+|+++|+|.....+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4667788999999998764 4677777777777774 46788999999999999999999999999999999877777
Q ss_pred HHHHHHHHh
Q 048211 86 ESELKIILD 94 (665)
Q Consensus 86 ~~~l~~~~~ 94 (665)
+..++..+.
T Consensus 117 k~~Ie~~i~ 125 (144)
T 1y8m_A 117 KSMVEDKIQ 125 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665543
No 220
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.89 E-value=0.012 Score=61.62 Aligned_cols=67 Identities=12% Similarity=0.010 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICP---S----YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p---~----~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
...+.++.|.|.+|..+|+++.|+..+.+|+++.+ + .+.++..+|.++..+|+|++|++.|++++++
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44666777777777777777777777777776632 1 1445667777777777777777777777665
No 221
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.89 E-value=0.018 Score=47.79 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=36.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 41 ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 41 ~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
.+|+++.+|+.+|.++..+|+|++|+..|+++++++|++..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 42 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG 42 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 47999999999999999999999999999999999998754
No 222
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.84 E-value=0.047 Score=48.33 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 048211 12 ATLYVNRASVLQK----RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNR 75 (665)
Q Consensus 12 a~~~~NRa~~~~~----l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l 75 (665)
+.++.|.+.+|.. .+++++|+..+++|.+. +++.+++++|.++.. .+++++|+..|+++.+.
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 4566777777777 67777777777777776 677777777777777 77777777777777766
No 223
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=95.44 E-value=0.0051 Score=53.54 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=29.2
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccccCCceec
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAVT 155 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~~ 155 (665)
..++|+.++.+|+||||+++|++|++|. |.|-..+
T Consensus 4 ~~~~v~~s~~~G~GvfA~~~I~~G~~I~-ey~g~vi 38 (119)
T 1n3j_A 4 DRVIVKKSPLGGYGVFARKSFEKGELVE-ECLCIVR 38 (119)
T ss_dssp SSEEEECSCSSCCEEEECCCBCSCEEEC-CCCCEEE
T ss_pred CCEEEEECCCceeEEEECCcCCCCCEEE-EeeEEEE
Confidence 4678899999999999999999999997 5554443
No 224
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.23 E-value=0.038 Score=60.77 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 11 VATLYVNRASVLQK-------RDHLV-------ECLRDCNRAVQ-ICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 11 ~a~~~~NRa~~~~~-------l~~~~-------~al~d~~~al~-~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
.+.+|.+.+..+.+ +|+++ +|+..+++|++ ++|+++.+|+..|..+..+|++++|.+.|++++++
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 45678888888886 79987 99999999997 89999999999999999999999999999999999
Q ss_pred CCChH
Q 048211 76 ESSLA 80 (665)
Q Consensus 76 ~p~~~ 80 (665)
.|.+.
T Consensus 351 ~p~~~ 355 (530)
T 2ooe_A 351 EDIDP 355 (530)
T ss_dssp SSSCH
T ss_pred cccCc
Confidence 99864
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.23 E-value=0.074 Score=48.50 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=54.8
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----------------------HHHHHHHHHHHHHcCC
Q 048211 7 DRNLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC---PSY----------------------AKAWYRRGKVNVSLEN 61 (665)
Q Consensus 7 ~~~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~---p~~----------------------~ka~~r~a~~~~~l~~ 61 (665)
.+...+.++...|.++|..++|..|..-+.+||++. +.+ ....|+.|.|+.++++
T Consensus 58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~ 137 (167)
T 3ffl_A 58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ 137 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCC
Confidence 456788899999999999999999999999998762 111 1577999999999999
Q ss_pred HHHHHHHHHH
Q 048211 62 HDDAVHDLTI 71 (665)
Q Consensus 62 ~~~A~~~~~~ 71 (665)
+++|+..++.
T Consensus 138 ~~~Ai~~Le~ 147 (167)
T 3ffl_A 138 DKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999988774
No 226
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.14 E-value=0.043 Score=56.89 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQIC--------PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~--------p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
..+.++.|++.++..+|+|++|+..+++++++. |....++..+|.++..+|++++|...+++++.+.+.
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 346678899999999999999999999999874 334567888999999999999999999999988664
No 227
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.07 E-value=0.047 Score=52.09 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 048211 12 ATLYVNRASVLQKRD----HLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRES 77 (665)
Q Consensus 12 a~~~~NRa~~~~~l~----~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~p 77 (665)
+.++.|.+.+|.. + ++++|+..+.+|++ ++++.+++.+|.++.. .+++++|++.|+++.+..+
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 3445555555555 4 55555555555533 2555555555555554 5555555555555555544
No 228
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=94.88 E-value=0.063 Score=51.19 Aligned_cols=62 Identities=8% Similarity=-0.094 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhc
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLE----NHDDAVHDLTIAKNR 75 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~----~~~~A~~~~~~al~l 75 (665)
.+.++.+.+..|...+++++|+..+.+|++. +++.+++++|.++.. + ++++|++.|+++.+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~ 82 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA 82 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC
Confidence 4678899999999999999999999999886 799999999999998 7 899999999999654
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.82 E-value=0.091 Score=52.68 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q 048211 11 VATLYVNRASVLQKR-----DHLVECLRDCNRAVQICPSY-AKAWYRRGKVNVS-LENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l-----~~~~~al~d~~~al~~~p~~-~ka~~r~a~~~~~-l~~~~~A~~~~~~al~l~p~ 78 (665)
...+|.-.+..|.++ |+.++|.+.+++||+++|+. ...++..|..+.. .|++++|...+++++..+|.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 567888899999996 99999999999999999975 9999999999988 59999999999999998776
No 230
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.60 E-value=0.11 Score=52.96 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICP--SYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p--~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
.+...|.++...|++++|++.+.++|+.+| ++..++.+.++++..+|+.+.|.+.++++.+.+|+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 345788999999999999999999999987 88999999999999999999999999999999983
No 231
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.54 E-value=0.071 Score=58.50 Aligned_cols=69 Identities=14% Similarity=0.025 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYA-KAWYRRGKVNVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~-ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
...++.+.+..+.++|++++|...++++++++|.++ .+|...|..+.+.|++++|.+.|++|++..|..
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence 467899999999999999999999999999999986 799999999999999999999999999987764
No 232
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.45 E-value=0.13 Score=53.24 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPS-----YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~-----~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
...+.++.|+|.+|..+|++++|+..+.+++++.+. ...++..+|.++...|++++|...+++++.+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999764 3578899999999999999999999999876
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.18 E-value=0.13 Score=42.88 Aligned_cols=45 Identities=9% Similarity=-0.022 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRG 53 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a 53 (665)
...+.++.+.|.+|+++|+++.|+.-+++|++++|+++.++.+++
T Consensus 43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 347888999999999999999999999999999999998877766
No 234
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=94.00 E-value=0.064 Score=53.89 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQIC-PSY-AKAWYRRGKVNVSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~-p~~-~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~ 76 (665)
+.+++|..+++.++|++|+..++.+++.. |.+ ..+++.+|.++..+|++++|+..|+++..-.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 78999999999999999999999887753 222 4589999999999999999999999998643
No 235
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.83 E-value=0.15 Score=45.96 Aligned_cols=43 Identities=12% Similarity=-0.075 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRR 52 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~ 52 (665)
-...+++|+|.+|+++++|++|++.++++|+.+|++..|..-+
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4678899999999999999999999999999999998775433
No 236
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.76 E-value=0.12 Score=62.41 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~ 78 (665)
...+|.+.|.++.+.|+|++|++.+.+| +++.+|++.|.++..+|+|++|++.|..|.+.+++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 4678999999999999999999999776 88999999999999999999999999999988755
No 237
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=93.62 E-value=0.3 Score=52.84 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Q 048211 12 ATLYVNRASVLQK----RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRESS 78 (665)
Q Consensus 12 a~~~~NRa~~~~~----l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~p~ 78 (665)
+.++.|.+.+|.. .+++++|+..+++|++. +++.+++++|.++.. .+++++|+..|+++++.+|+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 5677888888888 88899999999988886 578889999999888 88999999999999888754
No 238
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.12 Score=54.60 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQI------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~ 76 (665)
.+.+.++.|.|.+|..+|+|++|+.-+..++.. ++....++...|.++..+|+|+.|...|++++.+.
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 356888999999999999999999999998876 23346789999999999999999999999988764
No 239
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=93.06 E-value=0.038 Score=50.90 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=29.2
Q ss_pred eeEeeecCCCCcccccccCCCCCCcccccCCcee
Q 048211 121 QLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAV 154 (665)
Q Consensus 121 ~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~ 154 (665)
.++|..++.+|+||||+++|++|++|..-.+-+.
T Consensus 31 ~l~v~~~~~kG~Gl~A~~~I~~G~~I~ey~Gevi 64 (166)
T 3f9x_A 31 GMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLI 64 (166)
T ss_dssp TEEEEEETTTEEEEEESSCBCTTCEEEECCSEEE
T ss_pred CeEEEECCCceeEEEECCCcCCCCEEEEeeceEc
Confidence 6788899999999999999999999986655443
No 240
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.74 E-value=0.27 Score=50.03 Aligned_cols=69 Identities=7% Similarity=-0.124 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQI----------CPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGK 82 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~----------~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 82 (665)
.++.| ++.++|+|++|.++++.+++. +|+++.++.++..+...+|+ +|.+.++++.+++|++..+
T Consensus 215 ~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 215 LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 34555 899999999999999988876 58999999999999999998 8899999999999999866
Q ss_pred HHHH
Q 048211 83 KQIE 86 (665)
Q Consensus 83 ~~~~ 86 (665)
..+.
T Consensus 290 ~d~~ 293 (310)
T 3mv2_B 290 KHHQ 293 (310)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.07 E-value=0.31 Score=48.87 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCh
Q 048211 27 HLVECLRDCNRAVQICPSY--AKAWYRRGKVNVSL-----ENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 27 ~~~~al~d~~~al~~~p~~--~ka~~r~a~~~~~l-----~~~~~A~~~~~~al~l~p~~ 79 (665)
....|....++|+++||++ ..+|.-+|..|..+ |+.+.|.+.|++|++++|+.
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 3578899999999999995 66999999999996 99999999999999999964
No 242
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=91.61 E-value=0.068 Score=52.15 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=27.8
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccccC
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEE 150 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~ 150 (665)
..++|..++.+|+||||+++|++|++|..-.
T Consensus 92 ~~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~ 122 (232)
T 3ooi_A 92 PEVEIFRTLQRGWGLRTKTDIKKGEFVNEYV 122 (232)
T ss_dssp CCEEEEECSSSSEEEEESSCBCTTCEEEECC
T ss_pred ccEEEEEcCCceeEEEECceecCCceeeEee
Confidence 5799999999999999999999999996533
No 243
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=91.24 E-value=0.081 Score=49.96 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.9
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccccCCce
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYA 153 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~ 153 (665)
..++|..++.+|+||||+++|++|++|..-..-+
T Consensus 52 ~~l~V~~s~~~G~GlfA~~~I~~G~~I~EY~Gev 85 (192)
T 2w5y_A 52 EAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNV 85 (192)
T ss_dssp HHEEEEECSSSSEEEEESSCBCTTCEEEECCSEE
T ss_pred CcEEEEEcCCceeEEEECcccCCCCEEEEeeeeE
Confidence 5788999999999999999999999998544433
No 244
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=91.18 E-value=0.094 Score=50.80 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred eeEeeecCCCCcccccccCCCCCCcccccCCcee
Q 048211 121 QLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYAV 154 (665)
Q Consensus 121 ~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~~ 154 (665)
.+++..++.+|+||||+++|++|+.|....+-+.
T Consensus 75 ~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~Gevi 108 (222)
T 3ope_A 75 CLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVV 108 (222)
T ss_dssp CCEEEECTTSSEEEECSSCBCTTCEEEECCSEEE
T ss_pred cEEEEEcCCCceEEEECceECCCCEEEEecceec
Confidence 5889999999999999999999999986655543
No 245
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.13 E-value=0.53 Score=40.93 Aligned_cols=44 Identities=11% Similarity=-0.080 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRG 53 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a 53 (665)
..-.+++..|.+++++|+|..|++.++..|+.+|++..|..-+.
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45677888999999999999999999999999999987754333
No 246
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=89.96 E-value=1 Score=48.00 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------------------------HHHHHHHcCCHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYR------------------------------RGKVNVSLENHD 63 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r------------------------------~a~~~~~l~~~~ 63 (665)
-|.+.|.++.++|+|++|++-+.+| ++++.|-. ....|.+.|+++
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHH
Confidence 4778999999999999999999998 24444433 335667777777
Q ss_pred HHHHHHHHHHhcCCChH
Q 048211 64 DAVHDLTIAKNRESSLA 80 (665)
Q Consensus 64 ~A~~~~~~al~l~p~~~ 80 (665)
+|+..+++++.+++...
T Consensus 225 Eai~lLe~aL~le~ah~ 241 (449)
T 1b89_A 225 ELITMLEAALGLERAHM 241 (449)
T ss_dssp HHHHHHHHHTTSTTCCH
T ss_pred HHHHHHHHHhCCcHHHH
Confidence 77777777777776544
No 247
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.95 E-value=0.71 Score=40.46 Aligned_cols=56 Identities=9% Similarity=-0.005 Sum_probs=51.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 048211 18 RASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNR 75 (665)
Q Consensus 18 Ra~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l 75 (665)
.+..|...+.++.|++.+.+|.+. +++.+++++|.++.. .+++++|++.|+++.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 667777778899999999999998 899999999999999 89999999999999887
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.34 E-value=1.2 Score=46.70 Aligned_cols=71 Identities=8% Similarity=-0.011 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCChH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN-------RESSLA 80 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~-------l~p~~~ 80 (665)
....+...++.+++.+|++.+|+..+..++..+|-+-.+|..+-.+++..|+..+|++.|+.+-+ ++|+..
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456667888999999999999999999999999999999999999999999999998887533 466644
No 249
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=89.07 E-value=1.3 Score=47.70 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 048211 11 VATLYVNRASVLQK----RDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVS----LENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 11 ~a~~~~NRa~~~~~----l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~----l~~~~~A~~~~~~al~l~ 76 (665)
.+.++.+.+..|+. .++++.|+..+.+|++. +++.+++.+|..+.. .+++++|++.|+++.+..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 56788889999999 89999999999999987 789999999999999 999999999999998764
No 250
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=89.07 E-value=0.18 Score=50.49 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=28.9
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccccCCc
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPY 152 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~ 152 (665)
..++|..++.+|+||||+++|++|+.|..-..-
T Consensus 117 ~~leV~~t~~kG~Gl~A~~~I~~G~~I~EY~Ge 149 (278)
T 3h6l_A 117 ADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGE 149 (278)
T ss_dssp CCEEEEECSSSCEEEEESSCBCTTCEEEECCCE
T ss_pred cCEEEEEcCCCceEEEeCCccCCCCEeEEeeee
Confidence 588999999999999999999999999754443
No 251
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.01 E-value=0.73 Score=48.28 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSY-----------------AKAWYRRGKVNVSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~-----------------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~ 76 (665)
.....|..+.+.|+|++|++.+..+++.+|.. .+++..+|.++..+|++++|.+.|..++.+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999998753 3679999999999999999999999988764
Q ss_pred CC
Q 048211 77 SS 78 (665)
Q Consensus 77 p~ 78 (665)
+.
T Consensus 86 ~~ 87 (434)
T 4b4t_Q 86 MQ 87 (434)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 252
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=88.37 E-value=0.22 Score=53.25 Aligned_cols=52 Identities=13% Similarity=-0.033 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
..+.+.+.+++..|+|++|..-+..+ ..|.++|.|+.++|+|++|++.|+++
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 38899999999999999999999976 47889999999999999999999998
No 253
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=88.12 E-value=0.19 Score=50.64 Aligned_cols=34 Identities=35% Similarity=0.412 Sum_probs=29.5
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccccCCce
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEEPYA 153 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~P~~ 153 (665)
..++|..++.+|+||+|+++|++|+.|..-..-+
T Consensus 147 ~~l~v~~t~~kG~Gv~A~~~I~~G~~I~eY~Gev 180 (287)
T 3hna_A 147 ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGEL 180 (287)
T ss_dssp SCEEEEECSSSSEEEEESSCBCTTCEEEEECEEE
T ss_pred ccEEEEEcCCCceEEEeCcccCCCCEEEEeeeEE
Confidence 5889999999999999999999999997654443
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.97 E-value=1.3 Score=50.69 Aligned_cols=55 Identities=15% Similarity=0.287 Sum_probs=49.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048211 19 ASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAK 73 (665)
Q Consensus 19 a~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al 73 (665)
|.-+...|+|+-|+.-+.+|..+-|+..+.|+++++||..+|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3334567999999999999999999999999999999999999999998877653
No 255
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=87.80 E-value=1.1 Score=47.92 Aligned_cols=60 Identities=22% Similarity=0.144 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 048211 14 LYVNRASVLQKRD---HLVECLRDCNRAVQICPSYAKAWYRRGKVNVSL----ENHDDAVHDLTIAK 73 (665)
Q Consensus 14 ~~~NRa~~~~~l~---~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l----~~~~~A~~~~~~al 73 (665)
++.+.+.+|.+.| ++++|+..+.+|.+.+|..+.+++.+|.++... +++++|+..|+++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 6677777777777 778888888888887777777777788777655 67778888887776
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.72 E-value=1.2 Score=39.38 Aligned_cols=40 Identities=5% Similarity=-0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWY 50 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~ 50 (665)
.-.+++..|.+++++|+|..|.+.++..|+.+|+|..|..
T Consensus 76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4456788999999999999999999999999999977643
No 257
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.30 E-value=1.4 Score=35.95 Aligned_cols=45 Identities=13% Similarity=-0.031 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCChHHHHHHH
Q 048211 42 CPSYAKAWYRRGKVNVSLEN---HDDAVHDLTIAKNRESSLAGKKQIE 86 (665)
Q Consensus 42 ~p~~~ka~~r~a~~~~~l~~---~~~A~~~~~~al~l~p~~~~~~~~~ 86 (665)
+|+++..++.+|.+++..++ .++|...++++++++|++....-+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~l 49 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLI 49 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 68999999999999987776 7999999999999999997544333
No 258
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.88 E-value=1.4 Score=53.36 Aligned_cols=50 Identities=14% Similarity=-0.025 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
+.+.|..++..|+|++|+.-+.+| ..|.++|.++.++|+|++|++.+++|
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 445566666666666666655554 34555566666666666665555554
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.86 E-value=1.7 Score=37.94 Aligned_cols=43 Identities=5% Similarity=-0.218 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 048211 10 LVATLYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRR 52 (665)
Q Consensus 10 ~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~ 52 (665)
..-.+++-.|.+++++|+|+.|.+.++..|+.+|++..|..-+
T Consensus 76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3556778899999999999999999999999999998775433
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.55 E-value=2.7 Score=41.34 Aligned_cols=64 Identities=11% Similarity=-0.052 Sum_probs=58.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 048211 20 SVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAGKK 83 (665)
Q Consensus 20 ~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 83 (665)
..+++-+..++|++.+...++-+|.+++...-.-+.+.-.|+|+.|.+-++.+.+++|+.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 4578889999999999999999999999999999999999999999999999999999976443
No 261
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=86.07 E-value=3 Score=43.22 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------------------------------
Q 048211 11 VATLYVNRASVLQKRD---HLVECLRDCNRAVQICPSYAKAWYRRGKV-------------------------------- 55 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~---~~~~al~d~~~al~~~p~~~ka~~r~a~~-------------------------------- 55 (665)
-|.-++=||..++..+ .+.+|+.-+++|+++||+|+.+|..++.+
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 3444445666666654 36888999999999999987776643333
Q ss_pred ------------HHHcCCHHHHHHHHHHHHhcCCCh
Q 048211 56 ------------NVSLENHDDAVHDLTIAKNRESSL 79 (665)
Q Consensus 56 ------------~~~l~~~~~A~~~~~~al~l~p~~ 79 (665)
+...|++++|+..+++|+.++|+.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~ 310 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW 310 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Confidence 333578888888888888887764
No 262
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=85.00 E-value=1.2 Score=47.55 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhcC
Q 048211 11 VATLYVNRASVLQKR----DHLVECLRDCNRAVQICPSYAKAWYRRGKV-N--VSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l----~~~~~al~d~~~al~~~p~~~ka~~r~a~~-~--~~l~~~~~A~~~~~~al~l~ 76 (665)
.+..+.|.+.+|... +++++|+..+.+|. |+++.+++++|.+ + ...+++++|++.|+++.+..
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 345568888888776 79999999999998 8999999999999 4 57899999999999998764
No 263
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=84.70 E-value=0.36 Score=48.61 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=26.8
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccc
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHS 148 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~ 148 (665)
..++|..++.+|+||+|+++|++|+.|..
T Consensus 126 ~~l~V~~s~~~G~Gl~A~~~I~~G~~I~E 154 (290)
T 3bo5_A 126 FHFQVFKTHKKGWGLRTLEFIPKGRFVCE 154 (290)
T ss_dssp SCEEEEECSSSSEEEEESSCBCTTCEEEE
T ss_pred ccEEEEEcCCCcceEeECCccCCCCEEEE
Confidence 57899999999999999999999999974
No 264
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=83.67 E-value=0.37 Score=52.56 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=26.3
Q ss_pred eeEeeecCCCCcccccccCCCCCCcccccC
Q 048211 121 QLQCVTTPDKGRGITSQYDIPEGSLVHSEE 150 (665)
Q Consensus 121 ~~~v~~s~~~GR~lvAtrdi~~GevIl~e~ 150 (665)
.|++...+..||||||++||++||+|+.-+
T Consensus 94 ~v~i~~~~~~GrGl~A~~dI~~ge~ll~IP 123 (497)
T 3smt_A 94 GFEMVNFKEEGFGLRATRDIKAEELFLWVP 123 (497)
T ss_dssp TEEEEEETTTEEEEEESSCBCTTCEEEEEE
T ss_pred ceEEEEcCCCccEEEEcccCCCCCEEEEcC
Confidence 678888899999999999999999987543
No 265
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=83.20 E-value=0.47 Score=48.12 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=27.2
Q ss_pred eeeEeeecCCCCcccccccCCCCCCccccc
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSE 149 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e 149 (665)
..++|..++.+|+||+|+++|++|+.|..-
T Consensus 133 ~~l~v~~t~~kG~Gv~A~~~I~~G~~I~EY 162 (302)
T 1ml9_A 133 VPLQIFRTKDRGWGVKCPVNIKRGQFVDRY 162 (302)
T ss_dssp SCEEEEECSSSCEEEECSSCBCTTCEEEEC
T ss_pred cceEEEEcCCCceEEEECCeeCCCCEEEEE
Confidence 578899999999999999999999998753
No 266
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=82.74 E-value=0.49 Score=47.89 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=27.6
Q ss_pred eeeEeeecCCCCcccccccCCCCCCcccccC
Q 048211 120 VQLQCVTTPDKGRGITSQYDIPEGSLVHSEE 150 (665)
Q Consensus 120 ~~~~v~~s~~~GR~lvAtrdi~~GevIl~e~ 150 (665)
..++|..++.+|+||+|+++|++|+.|..-.
T Consensus 137 ~~l~v~~t~~~G~Gv~A~~~I~kG~~I~EY~ 167 (299)
T 1mvh_A 137 LPLEIFKTKEKGWGVRSLRFAPAGTFITCYL 167 (299)
T ss_dssp SCEEEEECSSSSEEEEESSCBCTTCEEEECC
T ss_pred ccEEEEEcCCCcceEeeCceeCCCCEEEEee
Confidence 5788999999999999999999999997533
No 267
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=81.60 E-value=0.48 Score=51.00 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=23.6
Q ss_pred eeeEeeec-CCCCcccccccCCCCCCccccc
Q 048211 120 VQLQCVTT-PDKGRGITSQYDIPEGSLVHSE 149 (665)
Q Consensus 120 ~~~~v~~s-~~~GR~lvAtrdi~~GevIl~e 149 (665)
.+|++... +..||||||++||++||+|+.-
T Consensus 38 ~~v~i~~~~~~~G~Gv~A~~dI~~ge~ll~I 68 (449)
T 3qxy_A 38 PKVAVSRQGTVAGYGMVARESVQAGELLFVV 68 (449)
T ss_dssp TTEEEESSSCSSSSEEEESSCBCTTCEEEEE
T ss_pred CceEEEecCCCceEEEEECCCCCCCCEEEEe
Confidence 35566553 4789999999999999988744
No 268
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=79.25 E-value=7.5 Score=34.74 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=54.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 21 VLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 21 ~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
.+..+++.++|-+-++.++++...++|.|.-.|+-..+.|+...|...+.+|+.+.|...
T Consensus 69 ~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 69 ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 456678999999999999998778999999999999999999999999999999988765
No 269
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=77.61 E-value=1.1 Score=44.17 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=27.8
Q ss_pred heeeEeeecCCC--CcccccccCCCCCCcccccCCce
Q 048211 119 QVQLQCVTTPDK--GRGITSQYDIPEGSLVHSEEPYA 153 (665)
Q Consensus 119 ~~~~~v~~s~~~--GR~lvAtrdi~~GevIl~e~P~~ 153 (665)
...++|+.|+.. |+||||+++|++|++|..-..-+
T Consensus 108 ~~~~~v~~S~i~~kG~GvfA~~~I~~G~~I~eY~Gev 144 (261)
T 2f69_A 108 SERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVR 144 (261)
T ss_dssp HTTEEEEECSSTTCCEEEEESSCBCTTCEEEEECCEE
T ss_pred CceEEEEecCCCCCceEEEECcccCCCCEEEEEeeEE
Confidence 346778888754 99999999999999997655444
No 270
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.45 E-value=2.7 Score=38.15 Aligned_cols=57 Identities=9% Similarity=0.002 Sum_probs=46.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 19 ASVLQKRDHLVECLRDCNRAVQIC---PSY------AKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 19 a~~~~~l~~~~~al~d~~~al~~~---p~~------~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
...++..+.|+-|+--++.++.+. |+- ..+++..|.+++..++|..|...|++|+.+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 456778899999998888877664 331 357888999999999999999999998765
No 271
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=77.28 E-value=0.86 Score=45.13 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=19.4
Q ss_pred cCCCCcccccccCCCCCCcccc
Q 048211 127 TPDKGRGITSQYDIPEGSLVHS 148 (665)
Q Consensus 127 s~~~GR~lvAtrdi~~GevIl~ 148 (665)
++.+|+||||+++|++||.|..
T Consensus 143 ~e~~G~GlfA~~~I~kGe~I~E 164 (273)
T 3s8p_A 143 SEQNGAKIVATKEWKRNDKIEL 164 (273)
T ss_dssp TCSSEEEEEESSCBCTTCEEEE
T ss_pred ecCCCceEEECCccCCCCEEEE
Confidence 4568999999999999999973
No 272
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=75.50 E-value=1.1 Score=45.04 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=26.5
Q ss_pred eeeEeeecCCCC--cccccccCCCCCCcccccCCce
Q 048211 120 VQLQCVTTPDKG--RGITSQYDIPEGSLVHSEEPYA 153 (665)
Q Consensus 120 ~~~~v~~s~~~G--R~lvAtrdi~~GevIl~e~P~~ 153 (665)
..++|+.|+..| +||||+++|++|++|+.-..-+
T Consensus 163 ~~~~v~~S~i~GkG~Gvfa~~~I~~G~~I~ey~Ge~ 198 (293)
T 1h3i_A 163 ERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVR 198 (293)
T ss_dssp TTEEEEECSSSSSSEEEEESSCBCTTCEEEEECCEE
T ss_pred eeEEEeeeecCCCcceEEECCcCCCCCEEEEeccEE
Confidence 467788776655 9999999999999997544433
No 273
>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.37 E-value=1.4 Score=34.79 Aligned_cols=22 Identities=18% Similarity=0.522 Sum_probs=18.7
Q ss_pred CCCCcccccccCCCCCCccccc
Q 048211 128 PDKGRGITSQYDIPEGSLVHSE 149 (665)
Q Consensus 128 ~~~GR~lvAtrdi~~GevIl~e 149 (665)
...+|.|||++||++||+|-.+
T Consensus 3 ~~~rrslvA~rdI~~Gevit~~ 24 (79)
T 1wvo_A 3 SGSSGSVVAKVKIPEGTILTMD 24 (79)
T ss_dssp CCCCCEEEESSCBCTTCBCCGG
T ss_pred ccccEEEEEeCccCCCCCcCHH
Confidence 3578999999999999998544
No 274
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=73.28 E-value=1.6 Score=39.19 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.5
Q ss_pred eeeEeeecC--CCCcccccccCCCCCCccc
Q 048211 120 VQLQCVTTP--DKGRGITSQYDIPEGSLVH 147 (665)
Q Consensus 120 ~~~~v~~s~--~~GR~lvAtrdi~~GevIl 147 (665)
..++++.|. .+|+||||+++|++|+.|.
T Consensus 29 ~~l~l~~S~i~~~G~GVfA~~~I~kG~~~g 58 (149)
T 2qpw_A 29 EEVRLFPSAVDKTRIGVWATKPILKGKKFG 58 (149)
T ss_dssp TTEEEEECSSCTTSEEEEESSCBCTTCEEC
T ss_pred CCeEEEEcCCCCCceEEEECCccCCCCEEE
Confidence 466777774 6799999999999999974
No 275
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=72.67 E-value=1.5 Score=44.29 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=25.4
Q ss_pred eeeEeeecC-CCCcccccccCCCCCCcccccC
Q 048211 120 VQLQCVTTP-DKGRGITSQYDIPEGSLVHSEE 150 (665)
Q Consensus 120 ~~~~v~~s~-~~GR~lvAtrdi~~GevIl~e~ 150 (665)
..++|..+. .+|+||+|+++|++|+.|..-.
T Consensus 140 ~~l~vfrt~~~kG~Gl~A~~~I~~G~~I~EY~ 171 (300)
T 2r3a_A 140 YSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYV 171 (300)
T ss_dssp SCEEEEECSSSCCEEEEESSCBCTTCEEEEEC
T ss_pred ccEEEEEeCCCceEEEEeCccccCCCEeEEEe
Confidence 467777664 7999999999999999997543
No 276
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=71.02 E-value=22 Score=38.46 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHH
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR-ESSLAGKKQIESELKII 92 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~~~~~~~~l~~~ 92 (665)
++.+.|-.......+..|...|.+|+.++|+....|..+|......|++-+|+=.|.+++.. .|...+...+....+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 44455555555667899999999999999999999999999999999999999999998876 66666666666555544
No 277
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=69.72 E-value=1.3 Score=43.21 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.3
Q ss_pred cCCCCcccccccCCCCCCcccc
Q 048211 127 TPDKGRGITSQYDIPEGSLVHS 148 (665)
Q Consensus 127 s~~~GR~lvAtrdi~~GevIl~ 148 (665)
++.+|+||||+++|++||+|..
T Consensus 115 ~~~~G~Gv~A~~~I~kGE~I~e 136 (247)
T 3rq4_A 115 METNGAKIVSTRAWKKNEKLEL 136 (247)
T ss_dssp TCSSCEEEEESSCBCTTCEEEE
T ss_pred ecCCcceEEeCCccCCCCEEEE
Confidence 4568999999999999999864
No 278
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=65.57 E-value=1.4 Score=47.22 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.6
Q ss_pred CCcccccccCCCCCCcccccC
Q 048211 130 KGRGITSQYDIPEGSLVHSEE 150 (665)
Q Consensus 130 ~GR~lvAtrdi~~GevIl~e~ 150 (665)
.||||||++||++||+|+.-+
T Consensus 32 ~GrGl~A~~~I~~ge~ll~IP 52 (440)
T 2h21_A 32 EGLGLVALKDISRNDVILQVP 52 (440)
T ss_dssp TEEEEEESSCBCTTEEEEEEE
T ss_pred CCCEEEEcccCCCCCEEEEeC
Confidence 699999999999999987653
No 279
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.81 E-value=4.5 Score=29.50 Aligned_cols=30 Identities=30% Similarity=0.787 Sum_probs=24.0
Q ss_pred cccccccccccccCCcCCCCCCCccccchHHHHh
Q 048211 162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQ 195 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~ 195 (665)
...|.-|.. + ..+.|++|.. .|||-.|.+.
T Consensus 12 ~~~C~vC~~--~-~kY~CPrC~~-~yCSl~C~k~ 41 (56)
T 2yqq_A 12 TVVCVICLE--K-PKYRCPACRV-PYCSVVCFRK 41 (56)
T ss_dssp CCCCTTTCS--C-CSEECTTTCC-EESSHHHHHH
T ss_pred CCccCcCcC--C-CeeeCCCCCC-CeeCHHHHHH
Confidence 346888887 2 3789999996 6699999876
No 280
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=62.23 E-value=29 Score=30.52 Aligned_cols=61 Identities=16% Similarity=0.040 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRA-VQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~a-l~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
|.+.|.-++-...-.+-+++.-+- +..++-+|..++..|.||.++|+..+|-+.+.+|.+-
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 456665555555556666666665 3555667999999999999999999999999988765
No 281
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=60.20 E-value=97 Score=28.22 Aligned_cols=69 Identities=4% Similarity=0.008 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--C--C-------------CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQI--C--P-------------SYAKA-WYRRGKVNVSLENHDDAVHDLTIAKNRE 76 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~--~--p-------------~~~ka-~~r~a~~~~~l~~~~~A~~~~~~al~l~ 76 (665)
..-.+.||.++++|..|+.-.+..|+- + | .+-.- +.-.|..+..+|+-++|+..|.......
T Consensus 65 ~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 65 KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 344688999999999999999999833 2 2 22233 3446999999999999999999988888
Q ss_pred CChHHHH
Q 048211 77 SSLAGKK 83 (665)
Q Consensus 77 p~~~~~~ 83 (665)
|=-.++.
T Consensus 145 ~lf~~vE 151 (242)
T 3kae_A 145 FLFSPVE 151 (242)
T ss_dssp CCHHHHH
T ss_pred cccchHH
Confidence 7766543
No 282
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=55.36 E-value=26 Score=39.44 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCChH
Q 048211 31 CLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAV-HDLTIAKNRESSLA 80 (665)
Q Consensus 31 al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~-~~~~~al~l~p~~~ 80 (665)
...-+++||...|.+++.|++.|+-+...|+.++|. +.|++|+...|.+.
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~ 378 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH
Confidence 344455555556666666666666665556655554 56666665555543
No 283
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=54.45 E-value=5.2 Score=30.37 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=19.5
Q ss_pred ccccccccccccCCcCCCCCCCccccchHHHHhhhc
Q 048211 163 THCHYCLNELPADAIPCTSCSIPLYCSRRCRGQAGG 198 (665)
Q Consensus 163 ~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~a~~ 198 (665)
..|-.|.++..-. ..=.+..|||+.|+..+..
T Consensus 10 ~~CP~Cgkp~~W~----~~~~~rPFCSeRCr~iDLg 41 (68)
T 1lv3_A 10 VNCPTCGKTVVWG----EISPFRPFCSKRCQLIDLG 41 (68)
T ss_dssp EECTTTCCEEECS----SSSSCCSSSSHHHHHHHHS
T ss_pred CcCCCCCCccccc----ccCCCCcccCHHHHhhhHH
Confidence 4577777664310 0112457899999988754
No 284
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=53.39 E-value=18 Score=29.12 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 46 AKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 46 ~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
+..+-|||..+.+-|+|++|++..++|
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 445566666666667766666554443
No 285
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=52.56 E-value=62 Score=25.47 Aligned_cols=29 Identities=10% Similarity=-0.055 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 048211 63 DDAVHDLTIAKNRESSLAGKKQIESELKI 91 (665)
Q Consensus 63 ~~A~~~~~~al~l~p~~~~~~~~~~~l~~ 91 (665)
.+|++.|..+++.+|+...+..++.++..
T Consensus 43 ~~aie~l~~alk~e~d~~~k~~ir~K~~e 71 (83)
T 2w2u_A 43 KKAIEVLAQLVSLYRDGSTAAIYEQMINE 71 (83)
T ss_dssp HHHHHHHHHHHHHSTTSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444455555666665544444444443
No 286
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=52.39 E-value=85 Score=24.81 Aligned_cols=24 Identities=4% Similarity=0.015 Sum_probs=11.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHH
Q 048211 69 LTIAKNRESSLAGKKQIESELKII 92 (665)
Q Consensus 69 ~~~al~l~p~~~~~~~~~~~l~~~ 92 (665)
|..+++.+|+...+..+...+..-
T Consensus 46 ll~alk~e~d~~~k~~lr~K~~eY 69 (86)
T 4a5x_A 46 LLQVLKGTKDNTKRCNLREKISKY 69 (86)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHH
Confidence 444455566655444444444433
No 287
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=52.00 E-value=5.8 Score=36.26 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=26.3
Q ss_pred hheeeEeeec--CCCCcccccccCCCCCCcccccCCcee
Q 048211 118 VQVQLQCVTT--PDKGRGITSQYDIPEGSLVHSEEPYAV 154 (665)
Q Consensus 118 ~~~~~~v~~s--~~~GR~lvAtrdi~~GevIl~e~P~~~ 154 (665)
....++|+.| ++.|.||+|+++|++|+.+- ||.-
T Consensus 25 LP~~l~l~~S~i~~~G~GVfA~~~IpkGt~fG---pY~G 60 (170)
T 3ep0_A 25 LPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMG---PFTG 60 (170)
T ss_dssp CCTTEEEEECSSSSCSEEEEESSCBCTTCEEE---EECC
T ss_pred CCCCeEEEEcCCCCCceEEEECcccCCCCEEE---ecCc
Confidence 3456777776 45699999999999999986 5543
No 288
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=50.56 E-value=30 Score=37.22 Aligned_cols=52 Identities=6% Similarity=-0.105 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 048211 29 VECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIAKNRESSLAG 81 (665)
Q Consensus 29 ~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 81 (665)
+.+..-+++++...|.+++.|+..+.-+...|+.+.|.+.|++|+.. |.+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~ 247 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF 247 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH
Confidence 44667899999999999999999999999999999999999999999 98753
No 289
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=48.69 E-value=81 Score=24.72 Aligned_cols=32 Identities=9% Similarity=-0.036 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 048211 62 HDDAVHDLTIAKNRESSLAGKKQIESELKIIL 93 (665)
Q Consensus 62 ~~~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 93 (665)
|..|++.|..+++.+|+...+..++.++..-+
T Consensus 34 Y~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~ 65 (83)
T 2v6y_A 34 YKKAIEVLSQIIVLYPESVARTAYEQMINEYK 65 (83)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44455556666666776655545555544433
No 290
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=48.28 E-value=1e+02 Score=24.64 Aligned_cols=30 Identities=3% Similarity=0.023 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 048211 62 HDDAVHDLTIAKNRESSLAGKKQIESELKI 91 (665)
Q Consensus 62 ~~~A~~~~~~al~l~p~~~~~~~~~~~l~~ 91 (665)
|.+|++.|..+++.+++...+..+...+..
T Consensus 38 Y~~Aie~l~~alk~e~~~~~k~~l~~K~~e 67 (93)
T 1wfd_A 38 YQEGIDMLLQVLKGTKESSKRCVLRTKISG 67 (93)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444556666667766544444444433
No 291
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=47.68 E-value=7.4 Score=28.61 Aligned_cols=33 Identities=27% Similarity=0.710 Sum_probs=24.4
Q ss_pred ccccccccccc-ccCCcCCCCCCCccccchHHHHh
Q 048211 162 ETHCHYCLNEL-PADAIPCTSCSIPLYCSRRCRGQ 195 (665)
Q Consensus 162 ~~~C~~C~~~~-~~~~~~C~~C~~~~YCS~~C~~~ 195 (665)
...|.-|.... ......|++|.. .|||-.|.+.
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~-rYCSl~C~k~ 44 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNA-PYCSLRCYRT 44 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCC-EESSHHHHHH
T ss_pred CCcCcCCCCCcCCCccccCcCCCC-CccChHHHHH
Confidence 35799997511 113789999996 6699999985
No 292
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=44.63 E-value=1.3e+02 Score=31.06 Aligned_cols=67 Identities=6% Similarity=0.030 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 15 YVNRASVLQKRDHLVECLRDCNRAVQICPS----------Y------------AKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 15 ~~NRa~~~~~l~~~~~al~d~~~al~~~p~----------~------------~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
...++......++.+.|++.+.+|+.+-.+ + ..++.+++.++..+|++.+|+..+..+
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455556678999999999999988411 1 144566788889999999999999999
Q ss_pred HhcCCChHH
Q 048211 73 KNRESSLAG 81 (665)
Q Consensus 73 l~l~p~~~~ 81 (665)
+..+|-++.
T Consensus 198 ~~~~P~~E~ 206 (388)
T 2ff4_A 198 TFEHPYREP 206 (388)
T ss_dssp HHHSTTCHH
T ss_pred HHhCCCCHH
Confidence 999998873
No 293
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=41.76 E-value=52 Score=26.45 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=28.4
Q ss_pred Ccch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048211 7 DRNL-VATLYVNRASVLQKRDHLVECLRDCNRAVQI 41 (665)
Q Consensus 7 ~~~~-~a~~~~NRa~~~~~l~~~~~al~d~~~al~~ 41 (665)
+..+ .|-.+.-||..+++-|+|++||+--.+|..+
T Consensus 9 ~spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 9 EGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3344 7888899999999999999999977766654
No 294
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.95 E-value=16 Score=26.83 Aligned_cols=38 Identities=24% Similarity=0.515 Sum_probs=26.5
Q ss_pred cccccccccccccCC-cCCCCCCCccccchHHHHhhhcccc
Q 048211 162 ETHCHYCLNELPADA-IPCTSCSIPLYCSRRCRGQAGGQVF 201 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~-~~C~~C~~~~YCS~~C~~~a~~~~H 201 (665)
...|..|.++++... +.|++|+..+ | -+|-.-.....|
T Consensus 15 ~~~C~~C~~~~~~~~~y~C~~C~~~F-C-~dCD~fiHe~Lh 53 (59)
T 1z60_A 15 ERFCYGCQGELKDQHVYVCAVCQNVF-C-VDCDVFVHDSLH 53 (59)
T ss_dssp CCEETTTTEECTTSEEECCTTTTCCB-C-HHHHHTTTTTSC
T ss_pred CCcccccCcccCCCccEECCccCcCc-c-cchhHHHHhhcc
Confidence 357999999875444 7899999965 9 578654433333
No 295
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=40.30 E-value=96 Score=34.80 Aligned_cols=68 Identities=6% Similarity=0.077 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChH
Q 048211 13 TLYVNRASVLQKRDHLVECLRDCNRAVQI-CPSYAKAWYRRGKVNVSLEN-HDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 13 ~~~~NRa~~~~~l~~~~~al~d~~~al~~-~p~~~ka~~r~a~~~~~l~~-~~~A~~~~~~al~l~p~~~ 80 (665)
.+|...+....+.|..+.|..-+.+|++. .+...+.|...|......++ ++.|...|+.+++..|++.
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence 34555555555556666666666666665 33345555555555555443 6666666666666655543
No 296
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Probab=39.42 E-value=9.3 Score=35.74 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=26.3
Q ss_pred hheeeEeeecC--CCCcccccccCCCCCCcccccCCcee
Q 048211 118 VQVQLQCVTTP--DKGRGITSQYDIPEGSLVHSEEPYAV 154 (665)
Q Consensus 118 ~~~~~~v~~s~--~~GR~lvAtrdi~~GevIl~e~P~~~ 154 (665)
....++++.|. ..|+||+|++.|++|+.+- ||.-
T Consensus 56 LP~~L~lr~S~i~~~G~GVfa~~~IpkGt~fG---PY~G 91 (196)
T 3dal_A 56 LPRNLLFKYATNSEEVIGVMSKEYIPKGTRFG---PLIG 91 (196)
T ss_dssp CCTTEEEEECTTSCCEEEEEESSCBCTTEEEC---CCCC
T ss_pred CCCCeEEEECCCCCceeEEEEccccCCCCEEE---eccc
Confidence 34567777764 4899999999999999975 6653
No 297
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=37.89 E-value=12 Score=33.49 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=23.2
Q ss_pred heeeEeeec-CCCCcccccccCCCCCCcccccCCcee
Q 048211 119 QVQLQCVTT-PDKGRGITSQYDIPEGSLVHSEEPYAV 154 (665)
Q Consensus 119 ~~~~~v~~s-~~~GR~lvAtrdi~~GevIl~e~P~~~ 154 (665)
...++++.| ++.|.||+|++.|++|+.+- ||.-
T Consensus 22 P~~l~l~~S~~~~g~GVfa~~~Ip~G~~fG---Py~G 55 (151)
T 3db5_A 22 PKQLVLRQSIVGAEVGVWTGETIPVRTCFG---PLIG 55 (151)
T ss_dssp CTTEEEEECC---CEEEEESSCBCTTCEEC---CCCC
T ss_pred CCCeEEEEccCCCceEEEEecccCCCCEEE---Eecc
Confidence 345666664 46899999999999999975 5543
No 298
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=36.73 E-value=73 Score=29.08 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=39.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 21 VLQKRDHLVECLRDCNRAVQICPSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 21 ~~~~l~~~~~al~d~~~al~~~p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
.-+++|+++.|++-++. + +...-|-+.|......|+++-|...|+++
T Consensus 14 LAL~lg~l~~A~e~a~~---l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKK---L--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHH---H--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHH---h--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 45688999999887654 3 67888999999999999999999988864
No 299
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=35.16 E-value=1.6e+02 Score=22.94 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHH
Q 048211 66 VHDLTIAKNRESSLAGKKQIESELKII 92 (665)
Q Consensus 66 ~~~~~~al~l~p~~~~~~~~~~~l~~~ 92 (665)
++.|..+++..++...+..++..+...
T Consensus 40 ie~l~~a~k~e~~~~~k~~l~~k~~eY 66 (85)
T 2v6x_A 40 LDYLMLALKYEKNPKSKDLIRAKFTEY 66 (85)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 333444555566655444444444433
No 300
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.96 E-value=12 Score=36.66 Aligned_cols=28 Identities=32% Similarity=0.715 Sum_probs=22.8
Q ss_pred cccccccccccccc----------CCcCCCCCCCcccc
Q 048211 161 RETHCHYCLNELPA----------DAIPCTSCSIPLYC 188 (665)
Q Consensus 161 ~~~~C~~C~~~~~~----------~~~~C~~C~~~~YC 188 (665)
...+|.+|+-.+|+ ..+.||.|+...|-
T Consensus 197 ~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 197 KKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp BTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred eCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 35689999998873 46799999998875
No 301
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.22 E-value=1.9e+02 Score=24.19 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhcCCC
Q 048211 64 DAVHDLTIAKNRESS 78 (665)
Q Consensus 64 ~A~~~~~~al~l~p~ 78 (665)
+|++.|..+++..+.
T Consensus 43 ~Aie~l~~alk~e~~ 57 (117)
T 2cpt_A 43 HAVQYFLHVVKYEAQ 57 (117)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhccC
Confidence 334445555555533
No 302
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=32.70 E-value=3.2e+02 Score=29.04 Aligned_cols=71 Identities=7% Similarity=-0.093 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCChHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQIC-PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN--RESSLAG 81 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~-p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~--l~p~~~~ 81 (665)
....|...-.+|.+.|++++|++-++...+.. .-+...|.-+-.++.+.|+.++|.+.|+...+ +.|+..+
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 34567778889999999999999998887764 22567788888899999999999999998876 4677544
No 303
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.49 E-value=25 Score=27.06 Aligned_cols=29 Identities=21% Similarity=0.662 Sum_probs=22.0
Q ss_pred cccccccccccccccCCcCCCCCCCccccch
Q 048211 160 CRETHCHYCLNELPADAIPCTSCSIPLYCSR 190 (665)
Q Consensus 160 ~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~ 190 (665)
....+|..|-+.+....+.| .|+..+ |+.
T Consensus 23 ~~~~RC~~C~kkvgL~~f~C-rCg~~F-Cs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKC-RCGSTF-CGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEEC-TTSCEE-CTT
T ss_pred ccCccchhhcCcccccceEe-ccCCEe-ccc
Confidence 34678999998875556889 799855 974
No 304
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=27.47 E-value=1.4e+02 Score=22.86 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 048211 50 YRRGKVNVSLENHDDAVHDLTIAKNRESSLA 80 (665)
Q Consensus 50 ~r~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 80 (665)
..+|..+...|++++|+..|-+|+.+-|+-.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 3479999999999999999999999988866
No 305
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=25.06 E-value=28 Score=27.22 Aligned_cols=24 Identities=21% Similarity=0.594 Sum_probs=17.9
Q ss_pred ccccccccccccc-CCcCCCCCCCc
Q 048211 162 ETHCHYCLNELPA-DAIPCTSCSIP 185 (665)
Q Consensus 162 ~~~C~~C~~~~~~-~~~~C~~C~~~ 185 (665)
..+|+.||+-... ...-||+|+-.
T Consensus 15 iLrC~aCf~~t~~~~k~FCp~CGn~ 39 (79)
T 2con_A 15 ILRCHGCFKTTSDMNRVFCGHCGNK 39 (79)
T ss_dssp EEECSSSCCEESCSSCCSCSSSCCS
T ss_pred eeEecccceECCCcccccccccCcc
Confidence 4679999997654 45679988873
No 306
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.75 E-value=32 Score=25.69 Aligned_cols=29 Identities=21% Similarity=0.667 Sum_probs=21.5
Q ss_pred cccccccccccccccCCcCCCCCCCccccch
Q 048211 160 CRETHCHYCLNELPADAIPCTSCSIPLYCSR 190 (665)
Q Consensus 160 ~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~ 190 (665)
....+|..|-+.+....+.| .|+..+ |+.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~F-C~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMC-RCGTTF-CGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEEC-SSSCEE-CTT
T ss_pred CcCCcChhhCCccCccCEEe-ecCCEe-ccc
Confidence 34578999999865446789 699855 974
No 307
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=24.50 E-value=30 Score=28.34 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=27.5
Q ss_pred cccccccccc-ccccCCcCCCCCCCccccchHHHHhhh
Q 048211 161 RETHCHYCLN-ELPADAIPCTSCSIPLYCSRRCRGQAG 197 (665)
Q Consensus 161 ~~~~C~~C~~-~~~~~~~~C~~C~~~~YCS~~C~~~a~ 197 (665)
....|+.|.. ++....++|..|.-.-+| +.|.....
T Consensus 30 ~gv~Cd~C~~~pI~G~RykC~~C~d~DLC-~~C~~~~~ 66 (98)
T 2dip_A 30 LGIPCNNCKQFPIEGKCYKCTECIEYHLC-QECFDSYC 66 (98)
T ss_dssp CCCCCSSSCCSSCCSCEEEESSSSSCEEE-HHHHHTTS
T ss_pred CCCCCcCCCCCCcccCeEECCCCCCccHH-HHHHccCC
Confidence 4588999986 444456789999998889 68977653
No 308
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=24.16 E-value=4.3e+02 Score=27.99 Aligned_cols=75 Identities=13% Similarity=0.007 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCChHHHHHH
Q 048211 11 VATLYVNRASVLQKRDHLVECLRDCNRAVQIC-PSYAKAWYRRGKVNVSLENHDDAVHDLTIAKN--RESSLAGKKQI 85 (665)
Q Consensus 11 ~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~-p~~~ka~~r~a~~~~~l~~~~~A~~~~~~al~--l~p~~~~~~~~ 85 (665)
....|.-.-.+|.+.|++++|.+-++...+.. .-+...|.-+-.++.+.|++++|.+.|++.-+ ..|+..+...+
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 34567777789999999999999999888764 12456788888999999999999999998765 47776655433
No 309
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.55 E-value=52 Score=26.07 Aligned_cols=30 Identities=20% Similarity=0.572 Sum_probs=22.3
Q ss_pred cccccccccccccccc-CCcCCCCCCCccccch
Q 048211 159 HCRETHCHYCLNELPA-DAIPCTSCSIPLYCSR 190 (665)
Q Consensus 159 ~~~~~~C~~C~~~~~~-~~~~C~~C~~~~YCS~ 190 (665)
.....+|+.|-+.+.. ..+.|. |+..+ |+.
T Consensus 22 k~~~~rC~~C~kkvgl~~~f~Cr-Cg~~F-C~~ 52 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATSFECR-CGNNF-CAS 52 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSCEECT-TCCEE-CTT
T ss_pred cccCccchhhCCeecccCCeEcC-CCCEe-ccc
Confidence 3456899999998754 368995 99855 974
No 310
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=22.95 E-value=59 Score=24.78 Aligned_cols=34 Identities=26% Similarity=0.724 Sum_probs=25.3
Q ss_pred cccccccccccccccCCcCCCCCCCccccchHHHHh
Q 048211 160 CRETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQ 195 (665)
Q Consensus 160 ~~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~ 195 (665)
...+.|++|...+....+.|..|++. |-..|...
T Consensus 33 ~~pt~C~~C~~~l~~qG~kC~~C~~~--cHkkC~~~ 66 (72)
T 2fnf_X 33 GGPGWCDLCGREVLRQALRCANCKFT--CHSECRSL 66 (72)
T ss_dssp SSCCBCTTTSSBCSSCCEECTTSSCE--ECTGGGGG
T ss_pred CCCcchhhhhHHHHhCcCccCCCCCe--echhhhcc
Confidence 45689999988774467899999973 66777643
No 311
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=22.83 E-value=27 Score=35.72 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=18.2
Q ss_pred CCCcccccccCCCCCCccccc
Q 048211 129 DKGRGITSQYDIPEGSLVHSE 149 (665)
Q Consensus 129 ~~GR~lvAtrdi~~GevIl~e 149 (665)
..+|.|||++||++||+|-.+
T Consensus 277 ~~rrSlva~~di~~Ge~lt~~ 297 (350)
T 3g8r_A 277 SLRRGVFATRPVAAGEALTAD 297 (350)
T ss_dssp TTSCEEEESSCBCTTCBCBTT
T ss_pred ccceEEEEccccCCCCCccHH
Confidence 358999999999999998654
No 312
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.72 E-value=39 Score=25.78 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=17.8
Q ss_pred cccccccccccc---cCCcCCCCCCC-ccc
Q 048211 162 ETHCHYCLNELP---ADAIPCTSCSI-PLY 187 (665)
Q Consensus 162 ~~~C~~C~~~~~---~~~~~C~~C~~-~~Y 187 (665)
.-.|..|..... .+.++|+.|+. ++|
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred EEECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 346888877632 35789999988 553
No 313
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.02 E-value=47 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.681 Sum_probs=15.4
Q ss_pred ccccccccccc------CCcCCCCCCCcc
Q 048211 164 HCHYCLNELPA------DAIPCTSCSIPL 186 (665)
Q Consensus 164 ~C~~C~~~~~~------~~~~C~~C~~~~ 186 (665)
.|.-|.+.... ..++|+.|++-.
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 47777766432 357899998843
No 314
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.05 E-value=41 Score=25.12 Aligned_cols=28 Identities=18% Similarity=0.653 Sum_probs=21.2
Q ss_pred ccccccccccccccCCcCCCCCCCccccch
Q 048211 161 RETHCHYCLNELPADAIPCTSCSIPLYCSR 190 (665)
Q Consensus 161 ~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~ 190 (665)
...+|..|-+.+....+.| .|+..+ |+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~F-C~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTF-CGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEE-CSS
T ss_pred cCCcChhhCCcccccCeEe-ecCCEe-ccc
Confidence 4679999999865445789 899855 973
No 315
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=20.60 E-value=1.6e+02 Score=32.80 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048211 43 PSYAKAWYRRGKVNVSLENHDDAVHDLTIA 72 (665)
Q Consensus 43 p~~~ka~~r~a~~~~~l~~~~~A~~~~~~a 72 (665)
-+.+..|-++|+.+...++++.|.+.|.++
T Consensus 678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 356888999999999999999999999875
No 316
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.42 E-value=33 Score=26.41 Aligned_cols=28 Identities=21% Similarity=0.791 Sum_probs=21.1
Q ss_pred ccccccccccccccCCcCCCCCCCccccch
Q 048211 161 RETHCHYCLNELPADAIPCTSCSIPLYCSR 190 (665)
Q Consensus 161 ~~~~C~~C~~~~~~~~~~C~~C~~~~YCS~ 190 (665)
...+|..|-+.+....+.|. |+. .||+.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~-~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGN-LFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSC-EECSS
T ss_pred cCCcChhhCCcccccCeecC-CCC-Eechh
Confidence 35789999998654568899 997 55973
No 317
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.33 E-value=1.3e+02 Score=25.26 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=12.3
Q ss_pred CCccccccCccccchhh
Q 048211 528 GPGYCLKCGSDRDLESS 544 (665)
Q Consensus 528 ~~~~C~~C~~~~~~~~~ 544 (665)
..|.|..||..+.....
T Consensus 35 ~~~~C~~CGE~~~d~e~ 51 (133)
T 3o9x_A 35 HGLYCVHCEESIMNKEE 51 (133)
T ss_dssp EEEEESSSSCEECCHHH
T ss_pred ceeECCCCCCEeecHHH
Confidence 35999999987654333
No 318
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=20.29 E-value=53 Score=23.08 Aligned_cols=30 Identities=27% Similarity=0.617 Sum_probs=19.8
Q ss_pred cccccccccccccCCcCCCCCCCccccchHHHHh
Q 048211 162 ETHCHYCLNELPADAIPCTSCSIPLYCSRRCRGQ 195 (665)
Q Consensus 162 ~~~C~~C~~~~~~~~~~C~~C~~~~YCS~~C~~~ 195 (665)
..+|.+|.+.++.... =.--.|||..|++.
T Consensus 18 ~~~C~~CG~~i~~~~~----~r~krFCS~sCR~~ 47 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQF----RGSKRFCSMTCAKR 47 (49)
T ss_dssp EEECTTTCCEEEGGGC----TTTSSSCSHHHHHH
T ss_pred CCcChhccCccccccC----CCCCccCCHHHHhh
Confidence 3579999988754211 11237899999975
No 319
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=20.17 E-value=1.1e+02 Score=26.43 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhcCChhhH-hHHHHHHHHHH
Q 048211 609 GYELVKLSSIQLSLDDHNAV-DTISRLAAIFL 639 (665)
Q Consensus 609 g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il~ 639 (665)
+...++.++..+..++++++ ..+.||.+|+.
T Consensus 36 al~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~ 67 (131)
T 3iqc_A 36 ILRFSSQAKRCIENEDIEKKIYYINRVTDIFT 67 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56667778888888999998 99999999883
No 320
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=20.02 E-value=99 Score=27.14 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHhhcCChhhH-hHHHHHHHHH
Q 048211 595 EILEKLYGHNHIVIGYELVKLSSIQLSLDDHNAV-DTISRLAAIF 638 (665)
Q Consensus 595 ~~~~~~yg~~~~~~g~~l~~l~~~~l~~~~~~~a-~~~~~A~~il 638 (665)
+.+..+|-. +...++.++..+..++++++ ..|.||.+|+
T Consensus 24 ~Li~mLydg-----al~~l~~A~~aie~~d~~~k~~~i~KA~~Ii 63 (145)
T 1vh6_A 24 ELTLMLYNG-----CLKFIRLAAQAIENDDMERKNENLIKAQNII 63 (145)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
No 321
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=20.01 E-value=3e+02 Score=28.40 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 048211 9 NLVATLYVNRASVLQKRDHLVECLRDCNRAVQIC---PSYA----KAWYRRGKVNV-SLENHDDAVHDLTIAK 73 (665)
Q Consensus 9 ~~~a~~~~NRa~~~~~l~~~~~al~d~~~al~~~---p~~~----ka~~r~a~~~~-~l~~~~~A~~~~~~al 73 (665)
..+-.+|...+.+|..++++..+-.-+.+|.+.. +..| +...--|..++ ..++|..|...|-.+.
T Consensus 136 ~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 136 NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3444555555555555555555555555554432 1111 11222344555 4555555555544443
No 322
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=20.01 E-value=2.5e+02 Score=29.01 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 048211 14 LYVNRASVLQKRDHLVECLRDCNRAVQI----CPS--YAKAWYRRGKVNVSLENHDDAVHDLTIAKNR 75 (665)
Q Consensus 14 ~~~NRa~~~~~l~~~~~al~d~~~al~~----~p~--~~ka~~r~a~~~~~l~~~~~A~~~~~~al~l 75 (665)
+-.+++..|+..|+|.+|+.-+.+.++- |.. -...+.-..+.+..++++..+...|.+|...
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 4457889999999999998888888763 211 2456777889999999999999999988664
Done!