Query 048213
Match_columns 532
No_of_seqs 372 out of 2984
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.5E-64 9.7E-69 543.9 32.0 505 4-521 39-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.8E-51 1.2E-55 464.4 35.3 471 1-528 111-721 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.4E-41 5.2E-46 331.6 14.2 249 111-362 1-285 (287)
4 KOG0617 Ras suppressor protein 99.4 4.4E-15 9.4E-20 125.9 -3.0 140 374-521 38-183 (264)
5 KOG0617 Ras suppressor protein 99.3 1.2E-13 2.5E-18 117.3 -1.2 153 344-504 30-191 (264)
6 KOG0444 Cytoskeletal regulator 99.3 1.9E-13 4.1E-18 137.2 -0.4 149 365-521 122-278 (1255)
7 KOG0444 Cytoskeletal regulator 99.3 2.4E-13 5.2E-18 136.5 -0.1 155 363-525 216-376 (1255)
8 KOG0472 Leucine-rich repeat pr 99.3 4.8E-13 1E-17 127.9 1.3 171 347-523 228-540 (565)
9 PLN00113 leucine-rich repeat r 99.3 9.5E-12 2.1E-16 142.4 8.4 149 367-523 162-320 (968)
10 PLN00113 leucine-rich repeat r 99.2 1.5E-11 3.3E-16 140.7 9.1 141 372-522 121-271 (968)
11 PF01637 Arch_ATPase: Archaeal 99.1 2.3E-10 4.9E-15 108.3 11.0 172 108-280 1-233 (234)
12 PLN03210 Resistant to P. syrin 99.0 5.9E-10 1.3E-14 128.6 10.2 22 24-45 155-176 (1153)
13 PRK00080 ruvB Holliday junctio 99.0 4E-09 8.7E-14 105.0 13.7 175 104-283 23-224 (328)
14 KOG0472 Leucine-rich repeat pr 99.0 2.3E-11 5E-16 116.6 -2.3 145 367-522 158-308 (565)
15 TIGR00635 ruvB Holliday juncti 99.0 1.2E-08 2.7E-13 100.7 16.8 172 106-283 4-203 (305)
16 TIGR03015 pepcterm_ATPase puta 99.0 2.9E-08 6.2E-13 96.2 18.7 162 124-285 40-242 (269)
17 PF05729 NACHT: NACHT domain 99.0 2.9E-09 6.2E-14 95.0 10.5 124 128-251 1-163 (166)
18 PRK04841 transcriptional regul 99.0 1.9E-08 4.1E-13 114.7 18.8 224 101-345 9-281 (903)
19 KOG4194 Membrane glycoprotein 99.0 4.9E-10 1.1E-14 112.4 4.8 137 374-518 83-252 (873)
20 PRK13342 recombination factor 99.0 6.3E-08 1.4E-12 99.4 20.2 190 105-299 11-218 (413)
21 KOG0618 Serine/threonine phosp 98.9 4.8E-11 1E-15 125.5 -3.0 147 372-523 290-488 (1081)
22 COG2256 MGS1 ATPase related to 98.9 7.2E-09 1.6E-13 100.4 11.7 219 105-329 23-266 (436)
23 PRK00411 cdc6 cell division co 98.9 8.9E-08 1.9E-12 98.2 20.1 216 104-335 28-302 (394)
24 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.8E-14 96.6 5.5 99 393-496 20-124 (175)
25 KOG4194 Membrane glycoprotein 98.9 1.5E-09 3.1E-14 109.1 5.2 112 363-475 143-263 (873)
26 KOG0532 Leucine-rich repeat (L 98.9 3.5E-10 7.7E-15 113.1 -0.5 144 367-521 119-270 (722)
27 PF14580 LRR_9: Leucine-rich r 98.9 2.5E-09 5.4E-14 94.8 4.8 115 401-523 6-125 (175)
28 KOG1259 Nischarin, modulator o 98.8 4.2E-10 9.2E-15 104.1 -0.4 151 344-501 256-414 (490)
29 PRK15387 E3 ubiquitin-protein 98.8 1.4E-08 3E-13 109.7 9.7 93 373-474 205-319 (788)
30 PRK15370 E3 ubiquitin-protein 98.8 8.9E-09 1.9E-13 111.8 6.4 73 433-521 326-398 (754)
31 TIGR02928 orc1/cdc6 family rep 98.8 8.4E-07 1.8E-11 90.0 20.4 173 105-277 14-242 (365)
32 KOG4237 Extracellular matrix p 98.7 1.6E-09 3.4E-14 104.1 0.0 85 431-522 273-357 (498)
33 KOG0618 Serine/threonine phosp 98.7 2E-09 4.2E-14 113.7 -0.7 121 368-497 358-488 (1081)
34 PRK15387 E3 ubiquitin-protein 98.7 2.3E-08 4.9E-13 108.1 7.3 129 373-522 326-456 (788)
35 PRK06893 DNA replication initi 98.7 2.2E-07 4.7E-12 87.4 12.5 153 126-283 38-205 (229)
36 PRK15370 E3 ubiquitin-protein 98.7 5E-08 1.1E-12 106.0 8.5 57 458-527 284-340 (754)
37 PRK04195 replication factor C 98.6 2.2E-06 4.7E-11 89.9 19.8 242 105-369 13-279 (482)
38 TIGR03420 DnaA_homol_Hda DnaA 98.6 6.1E-07 1.3E-11 84.5 12.7 170 111-284 22-204 (226)
39 PRK07003 DNA polymerase III su 98.6 3.8E-06 8.3E-11 89.2 19.3 176 105-281 15-221 (830)
40 PF13173 AAA_14: AAA domain 98.6 1.5E-07 3.3E-12 79.9 7.3 115 127-242 2-126 (128)
41 PRK05564 DNA polymerase III su 98.6 1.5E-06 3.2E-11 86.1 15.4 169 106-279 4-188 (313)
42 cd00116 LRR_RI Leucine-rich re 98.6 3.3E-08 7.3E-13 98.2 3.4 148 371-522 110-289 (319)
43 PLN03025 replication factor C 98.5 8.2E-07 1.8E-11 88.1 12.4 171 105-277 12-196 (319)
44 PF13855 LRR_8: Leucine rich r 98.5 1E-07 2.3E-12 69.2 4.5 60 457-522 1-60 (61)
45 TIGR01242 26Sp45 26S proteasom 98.5 2.1E-06 4.5E-11 86.8 15.3 169 103-275 119-328 (364)
46 PRK12402 replication factor C 98.5 2.7E-06 5.8E-11 85.3 16.0 174 105-280 14-225 (337)
47 COG3899 Predicted ATPase [Gene 98.5 1.8E-06 4E-11 95.7 15.9 239 107-354 1-334 (849)
48 PRK14961 DNA polymerase III su 98.5 6.2E-06 1.3E-10 83.2 18.4 173 105-278 15-217 (363)
49 PRK13341 recombination factor 98.5 1.4E-05 3E-10 86.7 21.7 167 105-276 27-212 (725)
50 PRK14963 DNA polymerase III su 98.5 1.5E-05 3.3E-10 83.1 21.2 173 105-278 13-214 (504)
51 KOG1259 Nischarin, modulator o 98.5 1.6E-08 3.4E-13 93.9 -1.1 123 391-522 283-410 (490)
52 COG3903 Predicted ATPase [Gene 98.5 1E-07 2.3E-12 93.1 4.2 212 126-347 13-258 (414)
53 KOG0532 Leucine-rich repeat (L 98.5 9.8E-09 2.1E-13 103.0 -3.0 140 371-522 100-245 (722)
54 PRK00440 rfc replication facto 98.5 9.7E-06 2.1E-10 80.6 18.2 173 105-278 16-200 (319)
55 PRK12323 DNA polymerase III su 98.5 1.4E-05 3E-10 83.9 19.6 176 105-281 15-225 (700)
56 cd00116 LRR_RI Leucine-rich re 98.5 9.9E-08 2.1E-12 94.8 3.5 151 370-522 82-261 (319)
57 PRK14962 DNA polymerase III su 98.4 4.3E-05 9.2E-10 79.2 22.5 192 105-297 13-239 (472)
58 PF05496 RuvB_N: Holliday junc 98.4 6E-06 1.3E-10 75.1 14.2 170 103-278 21-218 (233)
59 TIGR00678 holB DNA polymerase 98.4 5.5E-06 1.2E-10 75.5 13.9 153 117-276 3-186 (188)
60 PRK14949 DNA polymerase III su 98.4 1.6E-05 3.5E-10 86.2 19.1 174 105-279 15-218 (944)
61 PRK14960 DNA polymerase III su 98.4 5.3E-06 1.1E-10 87.2 14.8 173 105-278 14-216 (702)
62 KOG3207 Beta-tubulin folding c 98.4 4.1E-08 8.9E-13 95.7 -1.1 131 388-522 142-312 (505)
63 PRK07940 DNA polymerase III su 98.4 9.6E-06 2.1E-10 81.9 15.7 169 106-280 5-212 (394)
64 TIGR02397 dnaX_nterm DNA polym 98.4 1.5E-05 3.3E-10 80.5 17.3 177 105-282 13-219 (355)
65 cd00009 AAA The AAA+ (ATPases 98.4 2.1E-06 4.6E-11 74.3 9.6 112 109-221 1-131 (151)
66 KOG4658 Apoptotic ATPase [Sign 98.4 1.1E-07 2.3E-12 105.1 1.4 74 369-442 571-652 (889)
67 PRK09112 DNA polymerase III su 98.4 1.3E-05 2.8E-10 79.8 16.1 178 102-282 19-241 (351)
68 COG2909 MalT ATP-dependent tra 98.4 1.9E-05 4.1E-10 83.9 17.6 220 101-341 14-283 (894)
69 PF13855 LRR_8: Leucine rich r 98.4 5.9E-07 1.3E-11 65.3 4.6 60 432-496 1-60 (61)
70 PRK14955 DNA polymerase III su 98.3 7E-06 1.5E-10 83.8 13.8 173 105-278 15-225 (397)
71 TIGR02903 spore_lon_C ATP-depe 98.3 1.5E-05 3.2E-10 85.7 16.6 178 105-284 153-398 (615)
72 PRK07471 DNA polymerase III su 98.3 6.5E-06 1.4E-10 82.5 12.9 175 102-281 15-238 (365)
73 PRK03992 proteasome-activating 98.3 5.7E-06 1.2E-10 84.1 12.7 167 104-274 129-336 (389)
74 PRK08727 hypothetical protein; 98.3 1.3E-05 2.8E-10 75.5 14.3 168 107-278 20-201 (233)
75 PRK09087 hypothetical protein; 98.3 1.5E-05 3.3E-10 74.5 14.5 143 126-281 43-195 (226)
76 PRK14957 DNA polymerase III su 98.3 9.3E-06 2E-10 85.0 14.1 177 105-282 15-222 (546)
77 PRK06645 DNA polymerase III su 98.3 8E-06 1.7E-10 84.9 13.5 173 105-278 20-226 (507)
78 PRK08084 DNA replication initi 98.3 1.2E-05 2.5E-10 76.0 13.1 164 114-281 32-209 (235)
79 PRK14956 DNA polymerase III su 98.3 7.7E-06 1.7E-10 83.5 12.6 173 105-278 17-219 (484)
80 PLN03150 hypothetical protein; 98.3 1.9E-06 4.2E-11 93.0 8.3 87 430-523 440-527 (623)
81 PRK14951 DNA polymerase III su 98.3 9.3E-05 2E-09 78.7 20.6 175 105-280 15-224 (618)
82 COG4886 Leucine-rich repeat (L 98.3 5.1E-07 1.1E-11 92.7 3.2 142 370-522 141-288 (394)
83 PRK07994 DNA polymerase III su 98.2 0.0001 2.2E-09 78.5 20.2 173 105-278 15-217 (647)
84 PRK14954 DNA polymerase III su 98.2 3.3E-05 7.1E-10 82.3 16.1 171 105-276 15-223 (620)
85 PRK08691 DNA polymerase III su 98.2 1.3E-05 2.8E-10 85.0 12.8 175 105-280 15-219 (709)
86 PRK14964 DNA polymerase III su 98.2 2.8E-05 6E-10 80.3 14.5 173 105-278 12-214 (491)
87 PRK14970 DNA polymerase III su 98.2 4.7E-05 1E-09 77.2 15.9 171 105-276 16-204 (367)
88 KOG2028 ATPase related to the 98.2 1.2E-05 2.7E-10 76.9 10.4 130 119-251 154-294 (554)
89 COG4886 Leucine-rich repeat (L 98.2 6.7E-07 1.4E-11 91.8 1.8 146 371-527 118-270 (394)
90 PRK14959 DNA polymerase III su 98.2 0.00032 7E-09 74.2 21.6 180 105-285 15-225 (624)
91 PTZ00112 origin recognition co 98.2 6E-05 1.3E-09 80.9 16.1 181 105-285 754-986 (1164)
92 PHA02544 44 clamp loader, smal 98.1 2.7E-05 5.9E-10 77.3 12.8 142 104-249 19-171 (316)
93 TIGR02881 spore_V_K stage V sp 98.1 1.9E-05 4.1E-10 76.0 11.2 147 106-252 6-192 (261)
94 PRK05896 DNA polymerase III su 98.1 2.4E-05 5.2E-10 82.1 12.5 178 105-283 15-223 (605)
95 TIGR03345 VI_ClpV1 type VI sec 98.1 1.7E-05 3.8E-10 88.1 12.2 170 105-275 186-390 (852)
96 KOG3207 Beta-tubulin folding c 98.1 6.8E-07 1.5E-11 87.4 0.7 156 365-521 168-336 (505)
97 KOG0989 Replication factor C, 98.1 1.9E-05 4.1E-10 74.3 10.1 179 102-281 32-231 (346)
98 TIGR02639 ClpA ATP-dependent C 98.1 2.3E-05 5E-10 86.4 12.4 145 105-251 181-358 (731)
99 PLN03150 hypothetical protein; 98.1 5.7E-06 1.2E-10 89.4 7.4 102 394-501 420-531 (623)
100 PRK08903 DnaA regulatory inact 98.1 5.7E-05 1.2E-09 71.1 13.3 168 110-285 23-203 (227)
101 PRK07764 DNA polymerase III su 98.1 8.6E-05 1.9E-09 81.7 16.3 173 105-278 14-218 (824)
102 PRK14958 DNA polymerase III su 98.1 4.8E-05 1E-09 79.7 13.8 173 105-278 15-217 (509)
103 KOG2120 SCF ubiquitin ligase, 98.1 4.1E-07 8.8E-12 84.7 -1.6 62 454-522 310-374 (419)
104 PRK14969 DNA polymerase III su 98.1 4.8E-05 1E-09 80.2 13.5 176 105-281 15-221 (527)
105 PRK05642 DNA replication initi 98.1 0.00011 2.4E-09 69.2 14.5 152 127-282 45-209 (234)
106 TIGR02880 cbbX_cfxQ probable R 98.1 7.2E-05 1.6E-09 72.6 13.3 124 129-252 60-209 (284)
107 PTZ00454 26S protease regulato 98.0 8.5E-05 1.8E-09 75.3 14.2 168 103-274 142-350 (398)
108 CHL00181 cbbX CbbX; Provisiona 98.0 9.2E-05 2E-09 71.9 13.7 125 128-252 60-210 (287)
109 PRK14971 DNA polymerase III su 98.0 0.00015 3.3E-09 77.7 16.4 173 105-278 16-219 (614)
110 PRK06305 DNA polymerase III su 98.0 0.00018 3.8E-09 74.5 16.4 176 105-281 16-223 (451)
111 PTZ00361 26 proteosome regulat 98.0 0.0001 2.2E-09 75.4 13.9 165 106-274 183-388 (438)
112 COG1222 RPT1 ATP-dependent 26S 98.0 0.00028 6E-09 68.1 15.6 193 102-300 147-392 (406)
113 PRK14952 DNA polymerase III su 98.0 0.00026 5.6E-09 75.0 17.1 176 105-281 12-220 (584)
114 CHL00095 clpC Clp protease ATP 98.0 5.2E-05 1.1E-09 84.7 12.5 144 106-250 179-353 (821)
115 PRK09111 DNA polymerase III su 98.0 0.00015 3.2E-09 77.3 15.0 176 105-281 23-233 (598)
116 PRK08451 DNA polymerase III su 98.0 0.00022 4.8E-09 74.4 15.7 176 105-281 13-218 (535)
117 PRK14950 DNA polymerase III su 98.0 0.00027 5.8E-09 75.8 16.7 177 105-282 15-222 (585)
118 COG1373 Predicted ATPase (AAA+ 98.0 6E-05 1.3E-09 76.7 11.1 135 110-247 21-163 (398)
119 KOG1859 Leucine-rich repeat pr 98.0 3.3E-07 7.1E-12 94.7 -5.2 117 373-496 168-290 (1096)
120 PRK07133 DNA polymerase III su 97.9 0.0002 4.4E-09 76.9 15.3 176 105-281 17-220 (725)
121 PRK06647 DNA polymerase III su 97.9 0.00047 1E-08 73.1 17.1 175 105-280 15-219 (563)
122 PTZ00202 tuzin; Provisional 97.9 7.6E-05 1.7E-09 74.3 10.1 146 99-249 255-432 (550)
123 TIGR01241 FtsH_fam ATP-depende 97.9 0.00019 4.1E-09 75.7 13.6 175 102-280 51-266 (495)
124 PF13191 AAA_16: AAA ATPase do 97.9 1.4E-05 3.1E-10 72.4 4.6 51 107-157 1-54 (185)
125 KOG3665 ZYG-1-like serine/thre 97.9 5.6E-06 1.2E-10 89.4 1.9 124 391-522 121-261 (699)
126 PRK14948 DNA polymerase III su 97.9 0.00045 9.8E-09 74.1 16.3 176 105-281 15-222 (620)
127 PRK06620 hypothetical protein; 97.9 7.9E-05 1.7E-09 69.1 9.3 134 128-277 45-185 (214)
128 PRK14965 DNA polymerase III su 97.8 0.0017 3.7E-08 69.4 20.5 177 105-282 15-222 (576)
129 COG2255 RuvB Holliday junction 97.8 0.0016 3.4E-08 61.1 17.4 171 103-278 23-220 (332)
130 PF00004 AAA: ATPase family as 97.8 6.3E-05 1.4E-09 63.9 7.9 61 130-194 1-70 (132)
131 PRK10865 protein disaggregatio 97.8 0.00022 4.8E-09 79.7 14.1 146 105-251 177-354 (857)
132 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00012 2.6E-09 82.0 12.1 146 105-251 172-349 (852)
133 PF05673 DUF815: Protein of un 97.8 0.0011 2.4E-08 61.5 16.0 121 102-224 23-155 (249)
134 PRK11034 clpA ATP-dependent Cl 97.8 6.4E-05 1.4E-09 82.1 8.8 145 106-251 186-362 (758)
135 PF12799 LRR_4: Leucine Rich r 97.8 3.3E-05 7.1E-10 51.6 4.1 39 457-501 1-39 (44)
136 TIGR03689 pup_AAA proteasome A 97.8 0.00024 5.2E-09 73.8 12.4 151 103-253 179-380 (512)
137 PRK05563 DNA polymerase III su 97.8 0.00081 1.8E-08 71.5 16.7 173 105-278 15-217 (559)
138 PRK14953 DNA polymerase III su 97.8 0.00082 1.8E-08 70.1 16.3 177 105-282 15-221 (486)
139 KOG1644 U2-associated snRNP A' 97.8 3.5E-05 7.7E-10 68.2 5.2 105 391-496 41-151 (233)
140 PF14516 AAA_35: AAA-like doma 97.7 0.0014 3.1E-08 65.1 16.9 179 103-288 8-246 (331)
141 PRK05707 DNA polymerase III su 97.7 0.00099 2.1E-08 65.9 15.4 150 127-281 22-203 (328)
142 KOG0991 Replication factor C, 97.7 0.00017 3.8E-09 65.1 8.5 89 105-194 26-125 (333)
143 PF12799 LRR_4: Leucine Rich r 97.7 3.6E-05 7.8E-10 51.4 3.1 41 432-474 1-41 (44)
144 CHL00176 ftsH cell division pr 97.7 0.00077 1.7E-08 72.4 14.9 164 106-273 183-386 (638)
145 KOG2120 SCF ubiquitin ligase, 97.7 7.1E-06 1.5E-10 76.6 -0.5 148 372-523 188-350 (419)
146 COG0466 Lon ATP-dependent Lon 97.7 0.00037 8E-09 73.1 11.5 143 107-251 324-508 (782)
147 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.8E-10 85.7 2.0 126 370-495 123-260 (699)
148 PRK10536 hypothetical protein; 97.7 0.00041 8.9E-09 65.0 10.6 56 104-161 53-108 (262)
149 PF13401 AAA_22: AAA domain; P 97.7 9.1E-05 2E-09 63.0 5.9 92 126-219 3-125 (131)
150 PF00308 Bac_DnaA: Bacterial d 97.6 0.00014 3E-09 67.8 7.1 151 127-280 34-207 (219)
151 PRK09376 rho transcription ter 97.6 0.00015 3.3E-09 71.8 7.2 44 117-161 158-202 (416)
152 PRK07399 DNA polymerase III su 97.6 0.0017 3.7E-08 63.9 14.5 173 106-282 4-222 (314)
153 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00069 1.5E-08 70.4 12.3 169 105-274 227-428 (489)
154 PHA00729 NTP-binding motif con 97.6 0.00027 5.9E-09 65.1 7.9 119 116-251 6-140 (226)
155 cd01128 rho_factor Transcripti 97.5 0.00015 3.2E-09 68.6 6.1 36 125-161 14-49 (249)
156 PRK08058 DNA polymerase III su 97.5 0.002 4.3E-08 64.1 13.8 144 107-250 6-181 (329)
157 KOG0531 Protein phosphatase 1, 97.5 7.6E-06 1.6E-10 84.4 -3.6 106 365-472 91-201 (414)
158 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0021 4.5E-08 66.2 13.7 88 105-194 189-294 (802)
159 PRK15386 type III secretion pr 97.5 0.00024 5.2E-09 71.1 6.8 68 369-442 52-122 (426)
160 PRK14087 dnaA chromosomal repl 97.5 0.0012 2.5E-08 68.5 12.0 172 127-300 141-348 (450)
161 TIGR01243 CDC48 AAA family ATP 97.5 0.0018 3.8E-08 71.8 14.2 167 105-275 452-657 (733)
162 PRK11331 5-methylcytosine-spec 97.4 0.0011 2.3E-08 67.3 11.1 52 105-158 174-225 (459)
163 PRK08118 topology modulation p 97.4 0.00023 5E-09 63.3 5.7 63 128-193 2-69 (167)
164 PRK00149 dnaA chromosomal repl 97.4 0.0028 6.1E-08 66.0 14.4 171 127-300 148-349 (450)
165 TIGR00362 DnaA chromosomal rep 97.4 0.0029 6.2E-08 65.1 14.1 171 127-300 136-337 (405)
166 COG1474 CDC6 Cdc6-related prot 97.4 0.0088 1.9E-07 60.0 17.1 176 106-282 17-239 (366)
167 PRK15386 type III secretion pr 97.4 0.00021 4.6E-09 71.5 5.4 80 388-476 48-134 (426)
168 PRK08769 DNA polymerase III su 97.4 0.0049 1.1E-07 60.5 14.6 162 113-281 11-208 (319)
169 KOG1859 Leucine-rich repeat pr 97.4 3.8E-05 8.3E-10 79.9 -0.1 108 365-473 183-295 (1096)
170 KOG4579 Leucine-rich repeat (L 97.4 1.1E-05 2.4E-10 66.8 -3.5 120 354-475 12-141 (177)
171 KOG1909 Ran GTPase-activating 97.3 7.6E-05 1.6E-09 71.4 1.4 125 371-496 94-252 (382)
172 smart00382 AAA ATPases associa 97.3 0.0008 1.7E-08 57.4 7.7 68 128-196 3-92 (148)
173 KOG1644 U2-associated snRNP A' 97.3 0.00022 4.7E-09 63.3 3.9 94 373-467 46-150 (233)
174 PRK14086 dnaA chromosomal repl 97.3 0.0018 3.9E-08 68.4 11.2 148 127-277 314-484 (617)
175 PF10443 RNA12: RNA12 protein; 97.3 0.0066 1.4E-07 60.8 14.4 177 111-291 1-289 (431)
176 KOG0731 AAA+-type ATPase conta 97.3 0.0023 4.9E-08 68.6 11.7 169 107-278 312-521 (774)
177 TIGR01243 CDC48 AAA family ATP 97.3 0.0024 5.1E-08 70.9 12.3 168 104-275 176-381 (733)
178 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.5E-09 67.7 1.7 109 391-520 42-152 (260)
179 PRK14088 dnaA chromosomal repl 97.3 0.0087 1.9E-07 62.0 15.6 171 127-300 130-332 (440)
180 PRK06871 DNA polymerase III su 97.2 0.0057 1.2E-07 60.2 13.1 159 114-278 10-200 (325)
181 KOG4237 Extracellular matrix p 97.2 0.00013 2.8E-09 70.9 1.5 80 388-468 270-357 (498)
182 TIGR00602 rad24 checkpoint pro 97.2 0.0027 5.9E-08 67.9 11.6 51 102-152 80-135 (637)
183 PRK10787 DNA-binding ATP-depen 97.2 0.0018 3.8E-08 71.5 10.5 144 106-251 322-506 (784)
184 KOG0531 Protein phosphatase 1, 97.2 0.00014 2.9E-09 75.1 1.8 114 373-494 76-195 (414)
185 KOG0741 AAA+-type ATPase [Post 97.2 0.014 3E-07 59.3 15.4 139 126-271 537-704 (744)
186 PF02562 PhoH: PhoH-like prote 97.1 0.0014 3.1E-08 59.6 7.5 49 111-161 5-53 (205)
187 COG1223 Predicted ATPase (AAA+ 97.1 0.0044 9.4E-08 57.3 10.4 166 105-274 120-318 (368)
188 PF13177 DNA_pol3_delta2: DNA 97.1 0.0034 7.4E-08 55.5 9.6 129 110-238 1-161 (162)
189 PRK07261 topology modulation p 97.1 0.00093 2E-08 59.7 6.0 62 129-193 2-68 (171)
190 PF04665 Pox_A32: Poxvirus A32 97.1 0.0008 1.7E-08 62.7 5.7 32 128-161 14-45 (241)
191 KOG0729 26S proteasome regulat 97.1 0.0018 4E-08 59.7 7.8 90 102-193 173-281 (435)
192 TIGR00763 lon ATP-dependent pr 97.1 0.0055 1.2E-07 68.2 13.3 143 107-251 321-505 (775)
193 KOG2739 Leucine-rich acidic nu 97.1 0.00018 3.8E-09 66.5 1.3 74 370-444 44-128 (260)
194 PRK08181 transposase; Validate 97.1 0.0038 8.1E-08 59.8 10.3 64 128-194 107-179 (269)
195 KOG4579 Leucine-rich repeat (L 97.1 5.7E-05 1.2E-09 62.6 -1.8 105 389-501 24-138 (177)
196 PLN00020 ribulose bisphosphate 97.1 0.0076 1.6E-07 59.3 12.2 146 125-276 146-333 (413)
197 KOG2123 Uncharacterized conser 97.1 1.9E-05 4.1E-10 73.1 -5.4 79 389-467 16-98 (388)
198 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00082 1.8E-08 66.2 5.5 47 107-153 52-104 (361)
199 PF13207 AAA_17: AAA domain; P 97.1 0.0005 1.1E-08 57.5 3.5 23 129-151 1-23 (121)
200 PRK12422 chromosomal replicati 97.1 0.0041 8.9E-08 64.2 10.8 144 127-274 141-306 (445)
201 TIGR00767 rho transcription te 97.0 0.0013 2.7E-08 65.7 6.4 36 125-161 166-201 (415)
202 KOG2004 Mitochondrial ATP-depe 97.0 0.0017 3.7E-08 68.1 7.5 145 106-251 411-596 (906)
203 COG0593 DnaA ATPase involved i 97.0 0.0081 1.8E-07 60.4 12.1 171 126-301 112-314 (408)
204 PRK06090 DNA polymerase III su 97.0 0.018 3.9E-07 56.5 14.1 159 114-281 11-201 (319)
205 PRK07993 DNA polymerase III su 97.0 0.009 2E-07 59.3 12.1 160 113-278 9-201 (334)
206 PF01695 IstB_IS21: IstB-like 96.9 0.00068 1.5E-08 60.9 3.4 66 126-194 46-120 (178)
207 KOG0730 AAA+-type ATPase [Post 96.9 0.031 6.7E-07 58.5 15.6 148 102-252 430-616 (693)
208 PRK08116 hypothetical protein; 96.9 0.0014 3E-08 63.0 5.5 90 128-220 115-221 (268)
209 PRK06696 uridine kinase; Valid 96.9 0.0014 3E-08 61.5 5.2 43 110-152 2-47 (223)
210 PRK06964 DNA polymerase III su 96.9 0.041 8.8E-07 54.6 15.7 157 115-281 10-225 (342)
211 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0085 1.8E-07 61.9 10.9 124 126-252 544-693 (802)
212 KOG0734 AAA+-type ATPase conta 96.9 0.0021 4.6E-08 65.1 6.4 83 112-194 313-408 (752)
213 PRK13531 regulatory ATPase Rav 96.9 0.003 6.4E-08 64.7 7.6 51 106-158 20-70 (498)
214 KOG2982 Uncharacterized conser 96.9 0.00027 5.8E-09 66.3 0.1 147 371-520 73-233 (418)
215 KOG0736 Peroxisome assembly fa 96.8 0.0033 7.3E-08 66.5 7.8 92 101-194 667-776 (953)
216 KOG0743 AAA+-type ATPase [Post 96.8 0.022 4.8E-07 57.1 13.0 151 128-288 236-417 (457)
217 TIGR02640 gas_vesic_GvpN gas v 96.8 0.016 3.6E-07 55.6 12.0 37 113-151 9-45 (262)
218 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0037 8E-08 69.9 8.2 89 106-194 566-680 (852)
219 COG0542 clpA ATP-binding subun 96.8 0.0071 1.5E-07 65.4 9.8 146 105-251 169-346 (786)
220 COG1484 DnaC DNA replication p 96.7 0.0039 8.4E-08 59.4 6.9 66 126-194 104-179 (254)
221 TIGR02639 ClpA ATP-dependent C 96.7 0.0095 2.1E-07 66.0 11.0 88 107-194 455-565 (731)
222 PRK09183 transposase/IS protei 96.7 0.0012 2.5E-08 63.3 3.1 27 127-153 102-128 (259)
223 PRK06526 transposase; Provisio 96.7 0.00081 1.8E-08 64.0 2.1 27 127-153 98-124 (254)
224 PRK08939 primosomal protein Dn 96.7 0.0024 5.1E-08 62.6 5.2 107 110-219 135-260 (306)
225 PF14532 Sigma54_activ_2: Sigm 96.7 0.00099 2.2E-08 57.2 2.3 104 109-220 1-110 (138)
226 COG2607 Predicted ATPase (AAA+ 96.7 0.019 4.2E-07 52.6 10.5 101 102-204 56-164 (287)
227 COG0464 SpoVK ATPases of the A 96.7 0.038 8.1E-07 58.5 14.6 125 126-253 275-425 (494)
228 COG1875 NYN ribonuclease and A 96.7 0.0067 1.5E-07 58.9 7.9 54 108-161 226-280 (436)
229 KOG2982 Uncharacterized conser 96.6 0.0025 5.4E-08 60.0 4.8 65 365-429 93-161 (418)
230 COG0194 Gmk Guanylate kinase [ 96.6 0.0057 1.2E-07 54.0 6.6 25 127-151 4-28 (191)
231 KOG2227 Pre-initiation complex 96.6 0.05 1.1E-06 54.7 13.6 181 104-285 148-376 (529)
232 PRK12377 putative replication 96.6 0.0055 1.2E-07 57.9 6.7 29 126-154 100-128 (248)
233 PRK10733 hflB ATP-dependent me 96.5 0.014 3.1E-07 63.4 10.5 124 128-253 186-337 (644)
234 PRK06547 hypothetical protein; 96.5 0.0038 8.3E-08 55.6 5.1 36 117-152 5-40 (172)
235 KOG2035 Replication factor C, 96.5 0.095 2.1E-06 49.2 14.0 215 107-326 14-282 (351)
236 KOG2228 Origin recognition com 96.5 0.04 8.7E-07 53.1 11.8 147 105-251 23-219 (408)
237 PRK15455 PrkA family serine pr 96.5 0.0035 7.5E-08 65.2 5.1 47 107-153 77-129 (644)
238 KOG0727 26S proteasome regulat 96.5 0.012 2.6E-07 54.1 7.8 89 104-194 153-260 (408)
239 KOG1909 Ran GTPase-activating 96.5 0.00063 1.4E-08 65.3 -0.4 132 388-523 153-310 (382)
240 cd01133 F1-ATPase_beta F1 ATP 96.4 0.0052 1.1E-07 58.5 5.5 29 126-154 68-96 (274)
241 PRK08699 DNA polymerase III su 96.4 0.07 1.5E-06 52.8 13.6 142 127-277 21-202 (325)
242 PF05621 TniB: Bacterial TniB 96.4 0.036 7.9E-07 53.2 10.9 165 113-278 44-258 (302)
243 cd02117 NifH_like This family 96.4 0.0041 8.8E-08 57.8 4.5 26 128-153 1-26 (212)
244 PRK07667 uridine kinase; Provi 96.4 0.0049 1.1E-07 56.3 4.9 38 115-152 3-42 (193)
245 PRK13230 nitrogenase reductase 96.4 0.0044 9.5E-08 60.3 4.9 26 128-153 2-27 (279)
246 PRK13236 nitrogenase reductase 96.4 0.0048 1E-07 60.4 5.2 30 124-153 3-32 (296)
247 COG3267 ExeA Type II secretory 96.4 0.044 9.5E-07 50.9 10.9 160 124-283 48-247 (269)
248 PRK09270 nucleoside triphospha 96.4 0.0057 1.2E-07 57.5 5.4 29 125-153 31-59 (229)
249 KOG0735 AAA+-type ATPase [Post 96.3 0.026 5.7E-07 59.4 10.2 151 128-280 432-615 (952)
250 TIGR01287 nifH nitrogenase iro 96.3 0.0044 9.6E-08 60.1 4.4 27 128-154 1-27 (275)
251 PF00625 Guanylate_kin: Guanyl 96.3 0.0091 2E-07 54.0 6.2 33 127-161 2-34 (183)
252 KOG0652 26S proteasome regulat 96.3 0.077 1.7E-06 49.2 11.9 89 102-192 167-274 (424)
253 PF00485 PRK: Phosphoribulokin 96.3 0.0036 7.8E-08 57.2 3.4 25 129-153 1-25 (194)
254 PF13238 AAA_18: AAA domain; P 96.2 0.0039 8.4E-08 52.5 3.3 22 130-151 1-22 (129)
255 COG0470 HolB ATPase involved i 96.2 0.024 5.3E-07 56.3 9.3 131 108-238 3-168 (325)
256 PRK11034 clpA ATP-dependent Cl 96.2 0.012 2.5E-07 64.7 7.3 88 107-194 459-569 (758)
257 TIGR03346 chaperone_ClpB ATP-d 96.2 0.017 3.8E-07 65.0 8.8 46 106-151 565-619 (852)
258 PF08433 KTI12: Chromatin asso 96.2 0.013 2.8E-07 56.2 6.7 26 128-153 2-27 (270)
259 COG2812 DnaX DNA polymerase II 96.1 0.04 8.7E-07 57.2 10.6 168 106-274 16-213 (515)
260 PRK13232 nifH nitrogenase redu 96.1 0.0062 1.3E-07 59.0 4.6 25 128-152 2-26 (273)
261 PRK13235 nifH nitrogenase redu 96.1 0.0064 1.4E-07 58.9 4.6 26 128-153 2-27 (274)
262 PTZ00301 uridine kinase; Provi 96.1 0.005 1.1E-07 56.7 3.7 25 127-151 3-27 (210)
263 PRK04132 replication factor C 96.1 0.093 2E-06 58.1 13.9 144 135-279 574-729 (846)
264 PF13604 AAA_30: AAA domain; P 96.1 0.019 4.1E-07 52.5 7.4 98 117-219 8-130 (196)
265 COG1618 Predicted nucleotide k 96.1 0.005 1.1E-07 52.8 3.2 28 127-154 5-32 (179)
266 PRK08233 hypothetical protein; 96.1 0.0051 1.1E-07 55.4 3.6 25 127-151 3-27 (182)
267 KOG0739 AAA+-type ATPase [Post 96.1 0.059 1.3E-06 51.0 10.4 166 106-274 133-334 (439)
268 PRK06921 hypothetical protein; 96.1 0.015 3.3E-07 55.8 6.9 65 126-192 116-187 (266)
269 PRK05480 uridine/cytidine kina 96.1 0.0058 1.3E-07 56.6 3.9 27 125-151 4-30 (209)
270 cd02019 NK Nucleoside/nucleoti 96.1 0.0057 1.2E-07 45.4 3.0 23 129-151 1-23 (69)
271 TIGR01425 SRP54_euk signal rec 96.0 0.035 7.7E-07 56.5 9.3 28 126-153 99-126 (429)
272 PF13671 AAA_33: AAA domain; P 96.0 0.0063 1.4E-07 52.4 3.5 23 129-151 1-23 (143)
273 PRK07952 DNA replication prote 96.0 0.024 5.2E-07 53.5 7.5 28 127-154 99-126 (244)
274 COG0465 HflB ATP-dependent Zn 96.0 0.055 1.2E-06 57.1 10.8 166 106-275 150-355 (596)
275 PF00448 SRP54: SRP54-type pro 96.0 0.019 4.2E-07 52.3 6.7 28 127-154 1-28 (196)
276 KOG1969 DNA replication checkp 96.0 0.016 3.4E-07 61.3 6.7 64 127-194 326-399 (877)
277 COG1419 FlhF Flagellar GTP-bin 96.0 0.042 9.1E-07 54.8 9.3 37 115-151 187-228 (407)
278 PRK10865 protein disaggregatio 96.0 0.022 4.7E-07 64.0 8.3 45 107-151 569-622 (857)
279 KOG2543 Origin recognition com 96.0 0.023 4.9E-07 55.7 7.2 145 105-250 5-192 (438)
280 CHL00095 clpC Clp protease ATP 95.9 0.025 5.5E-07 63.5 8.8 46 106-151 509-563 (821)
281 TIGR00235 udk uridine kinase. 95.9 0.0067 1.5E-07 56.1 3.6 27 126-152 5-31 (207)
282 cd01131 PilT Pilus retraction 95.9 0.02 4.3E-07 52.5 6.7 90 128-223 2-112 (198)
283 PRK14737 gmk guanylate kinase; 95.9 0.016 3.4E-07 52.5 5.9 26 126-151 3-28 (186)
284 PRK06762 hypothetical protein; 95.9 0.0072 1.6E-07 53.6 3.6 24 128-151 3-26 (166)
285 TIGR01281 DPOR_bchL light-inde 95.9 0.0094 2E-07 57.6 4.6 24 129-152 2-25 (268)
286 COG2884 FtsE Predicted ATPase 95.9 0.023 5E-07 50.3 6.3 27 126-152 27-53 (223)
287 PF02374 ArsA_ATPase: Anion-tr 95.9 0.01 2.3E-07 58.1 4.7 26 128-153 2-27 (305)
288 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0081 1.8E-07 54.4 3.6 26 126-151 2-27 (188)
289 KOG3864 Uncharacterized conser 95.8 0.0013 2.8E-08 58.5 -1.6 30 415-444 102-137 (221)
290 PHA02244 ATPase-like protein 95.8 0.043 9.4E-07 54.4 8.8 35 116-152 110-144 (383)
291 smart00072 GuKc Guanylate kina 95.8 0.025 5.4E-07 51.2 6.7 25 127-151 2-26 (184)
292 PRK03839 putative kinase; Prov 95.8 0.0077 1.7E-07 54.3 3.4 25 129-153 2-26 (180)
293 KOG0744 AAA+-type ATPase [Post 95.8 0.021 4.6E-07 54.6 6.2 27 128-154 178-204 (423)
294 PRK13185 chlL protochlorophyll 95.8 0.012 2.6E-07 56.9 4.8 26 128-153 3-28 (270)
295 PRK13233 nifH nitrogenase redu 95.8 0.011 2.4E-07 57.3 4.5 25 128-152 3-27 (275)
296 PF06309 Torsin: Torsin; Inte 95.8 0.029 6.2E-07 46.5 6.2 46 106-151 25-77 (127)
297 cd02040 NifH NifH gene encodes 95.8 0.012 2.6E-07 56.8 4.7 26 128-153 2-27 (270)
298 KOG0728 26S proteasome regulat 95.7 0.13 2.8E-06 47.5 10.7 153 126-285 180-367 (404)
299 PF13245 AAA_19: Part of AAA d 95.7 0.043 9.3E-07 41.5 6.6 53 126-178 9-62 (76)
300 PRK13234 nifH nitrogenase redu 95.7 0.015 3.2E-07 57.0 5.0 27 126-152 3-29 (295)
301 COG0572 Udk Uridine kinase [Nu 95.7 0.011 2.3E-07 54.0 3.7 28 126-153 7-34 (218)
302 PF03205 MobB: Molybdopterin g 95.7 0.018 3.9E-07 49.4 4.9 27 128-154 1-27 (140)
303 PRK11608 pspF phage shock prot 95.7 0.021 4.6E-07 56.7 6.1 46 106-151 6-53 (326)
304 cd00071 GMPK Guanosine monopho 95.7 0.024 5.1E-07 48.6 5.6 23 129-151 1-23 (137)
305 TIGR02858 spore_III_AA stage I 95.7 0.049 1.1E-06 52.2 8.3 105 116-223 99-232 (270)
306 KOG2123 Uncharacterized conser 95.6 0.0021 4.6E-08 59.9 -1.1 95 367-463 17-123 (388)
307 PF07693 KAP_NTPase: KAP famil 95.6 0.46 9.9E-06 47.2 15.4 43 112-154 2-47 (325)
308 cd04139 RalA_RalB RalA/RalB su 95.6 0.031 6.7E-07 49.0 6.3 23 129-151 2-24 (164)
309 TIGR00554 panK_bact pantothena 95.6 0.016 3.5E-07 56.0 4.7 27 124-150 59-85 (290)
310 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.5 0.05 1.1E-06 48.6 7.6 35 116-150 4-38 (174)
311 TIGR03499 FlhF flagellar biosy 95.5 0.039 8.6E-07 53.5 7.4 36 126-161 193-229 (282)
312 PRK12608 transcription termina 95.5 0.037 8E-07 55.0 7.1 40 114-153 119-159 (380)
313 COG1102 Cmk Cytidylate kinase 95.5 0.012 2.5E-07 50.6 3.0 26 129-154 2-27 (179)
314 KOG4341 F-box protein containi 95.5 0.0075 1.6E-07 59.5 2.1 133 391-525 293-440 (483)
315 TIGR02012 tigrfam_recA protein 95.5 0.044 9.6E-07 53.7 7.5 26 127-152 55-80 (321)
316 PF12775 AAA_7: P-loop contain 95.5 0.028 6.2E-07 54.1 6.1 75 116-193 23-111 (272)
317 COG1100 GTPase SAR1 and relate 95.5 0.032 7E-07 51.8 6.4 26 128-153 6-31 (219)
318 PRK00625 shikimate kinase; Pro 95.5 0.012 2.6E-07 52.5 3.2 24 129-152 2-25 (173)
319 cd02023 UMPK Uridine monophosp 95.5 0.01 2.2E-07 54.4 2.8 23 129-151 1-23 (198)
320 PRK00131 aroK shikimate kinase 95.5 0.014 3E-07 52.2 3.7 26 127-152 4-29 (175)
321 cd04119 RJL RJL (RabJ-Like) su 95.5 0.039 8.5E-07 48.6 6.6 22 130-151 3-24 (168)
322 KOG0726 26S proteasome regulat 95.5 0.034 7.4E-07 52.4 6.2 88 103-192 182-288 (440)
323 TIGR02016 BchX chlorophyllide 95.5 0.018 3.9E-07 56.3 4.7 26 128-153 1-26 (296)
324 PRK13768 GTPase; Provisional 95.5 0.019 4.1E-07 54.8 4.7 25 128-152 3-27 (253)
325 PRK04040 adenylate kinase; Pro 95.4 0.014 3E-07 53.0 3.5 25 127-151 2-26 (188)
326 cd02032 Bchl_like This family 95.4 0.018 3.9E-07 55.5 4.6 25 129-153 2-26 (267)
327 cd02025 PanK Pantothenate kina 95.4 0.01 2.2E-07 55.3 2.7 24 129-152 1-24 (220)
328 COG0003 ArsA Predicted ATPase 95.4 0.021 4.7E-07 55.9 5.0 27 127-153 2-28 (322)
329 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.011 2.4E-07 53.3 2.9 24 129-152 1-24 (183)
330 TIGR02974 phageshock_pspF psp 95.4 0.033 7.2E-07 55.3 6.4 45 108-152 1-47 (329)
331 PF00910 RNA_helicase: RNA hel 95.4 0.011 2.5E-07 48.1 2.6 23 130-152 1-23 (107)
332 COG3854 SpoIIIAA ncharacterize 95.4 0.067 1.4E-06 48.9 7.6 102 118-222 128-255 (308)
333 cd04155 Arl3 Arl3 subfamily. 95.4 0.081 1.8E-06 47.0 8.5 26 125-150 12-37 (173)
334 cd04159 Arl10_like Arl10-like 95.4 0.034 7.3E-07 48.3 5.9 21 130-150 2-22 (159)
335 COG0488 Uup ATPase components 95.4 0.15 3.2E-06 53.8 11.4 26 126-151 347-372 (530)
336 COG1428 Deoxynucleoside kinase 95.4 0.013 2.9E-07 52.7 3.2 28 127-154 4-31 (216)
337 TIGR02322 phosphon_PhnN phosph 95.4 0.014 3E-07 52.6 3.3 25 128-152 2-26 (179)
338 PF10236 DAP3: Mitochondrial r 95.4 0.43 9.2E-06 47.0 14.0 47 232-278 258-306 (309)
339 COG3640 CooC CO dehydrogenase 95.4 0.028 6E-07 51.5 5.1 26 129-154 2-27 (255)
340 PRK07132 DNA polymerase III su 95.4 0.55 1.2E-05 45.8 14.5 160 115-281 5-185 (299)
341 PRK05541 adenylylsulfate kinas 95.3 0.017 3.7E-07 51.8 3.8 28 126-153 6-33 (176)
342 PF00560 LRR_1: Leucine Rich R 95.3 0.0098 2.1E-07 32.9 1.4 18 458-475 1-18 (22)
343 TIGR02902 spore_lonB ATP-depen 95.3 0.029 6.4E-07 59.5 6.1 46 105-150 64-109 (531)
344 CHL00206 ycf2 Ycf2; Provisiona 95.3 0.17 3.6E-06 59.9 12.2 29 125-153 1628-1656(2281)
345 cd02024 NRK1 Nicotinamide ribo 95.3 0.013 2.8E-07 52.8 2.9 23 129-151 1-23 (187)
346 PF01583 APS_kinase: Adenylyls 95.3 0.021 4.6E-07 49.6 4.1 28 127-154 2-29 (156)
347 cd00983 recA RecA is a bacter 95.3 0.051 1.1E-06 53.4 7.2 26 127-152 55-80 (325)
348 smart00173 RAS Ras subfamily o 95.3 0.041 8.8E-07 48.4 6.1 22 129-150 2-23 (164)
349 cd01120 RecA-like_NTPases RecA 95.3 0.055 1.2E-06 47.4 6.9 24 129-152 1-24 (165)
350 COG4088 Predicted nucleotide k 95.3 0.027 5.9E-07 50.4 4.6 27 128-154 2-28 (261)
351 TIGR01817 nifA Nif-specific re 95.3 0.084 1.8E-06 56.4 9.5 49 104-152 194-244 (534)
352 TIGR00064 ftsY signal recognit 95.3 0.028 6.1E-07 54.1 5.2 28 125-152 70-97 (272)
353 PRK11889 flhF flagellar biosyn 95.3 0.039 8.4E-07 55.2 6.2 27 126-152 240-266 (436)
354 cd04124 RabL2 RabL2 subfamily. 95.2 0.051 1.1E-06 47.8 6.5 21 130-150 3-23 (161)
355 PRK05703 flhF flagellar biosyn 95.2 0.068 1.5E-06 55.0 8.3 26 127-152 221-246 (424)
356 PRK06217 hypothetical protein; 95.2 0.015 3.3E-07 52.5 3.1 25 128-152 2-26 (183)
357 PRK06835 DNA replication prote 95.2 0.065 1.4E-06 53.0 7.7 28 127-154 183-210 (329)
358 PF07728 AAA_5: AAA domain (dy 95.2 0.016 3.5E-07 49.7 3.1 22 130-151 2-23 (139)
359 KOG0651 26S proteasome regulat 95.2 0.048 1.1E-06 51.9 6.3 91 126-223 165-284 (388)
360 PRK00889 adenylylsulfate kinas 95.2 0.02 4.4E-07 51.3 3.8 27 126-152 3-29 (175)
361 cd04120 Rab12 Rab12 subfamily. 95.2 0.052 1.1E-06 49.9 6.5 21 130-150 3-23 (202)
362 cd04162 Arl9_Arfrp2_like Arl9/ 95.2 0.036 7.9E-07 49.0 5.3 21 130-150 2-22 (164)
363 cd00154 Rab Rab family. Rab G 95.2 0.065 1.4E-06 46.4 6.9 22 130-151 3-24 (159)
364 COG0396 sufC Cysteine desulfur 95.2 0.071 1.5E-06 48.8 7.0 27 126-152 29-55 (251)
365 PLN02165 adenylate isopentenyl 95.2 0.024 5.2E-07 55.5 4.4 30 122-151 38-67 (334)
366 cd00227 CPT Chloramphenicol (C 95.2 0.018 3.9E-07 51.6 3.4 24 128-151 3-26 (175)
367 PF13504 LRR_7: Leucine rich r 95.1 0.014 2.9E-07 30.1 1.5 16 458-473 2-17 (17)
368 PRK05342 clpX ATP-dependent pr 95.1 0.057 1.2E-06 55.1 7.3 46 107-152 72-133 (412)
369 TIGR00150 HI0065_YjeE ATPase, 95.1 0.04 8.7E-07 46.5 5.1 27 127-153 22-48 (133)
370 smart00175 RAB Rab subfamily o 95.1 0.062 1.3E-06 47.1 6.7 22 130-151 3-24 (164)
371 PRK10751 molybdopterin-guanine 95.1 0.023 4.9E-07 50.4 3.8 28 126-153 5-32 (173)
372 PRK09354 recA recombinase A; P 95.1 0.068 1.5E-06 52.9 7.5 26 127-152 60-85 (349)
373 PRK10463 hydrogenase nickel in 95.1 0.054 1.2E-06 52.1 6.6 36 118-153 95-130 (290)
374 PRK13947 shikimate kinase; Pro 95.1 0.018 3.8E-07 51.4 3.2 25 129-153 3-27 (171)
375 COG0563 Adk Adenylate kinase a 95.1 0.02 4.2E-07 51.4 3.3 24 129-152 2-25 (178)
376 PF03308 ArgK: ArgK protein; 95.1 0.044 9.4E-07 51.3 5.6 41 114-154 14-56 (266)
377 cd02020 CMPK Cytidine monophos 95.1 0.018 3.8E-07 49.8 3.0 24 129-152 1-24 (147)
378 cd04113 Rab4 Rab4 subfamily. 95.1 0.068 1.5E-06 46.9 6.8 22 130-151 3-24 (161)
379 cd04177 RSR1 RSR1 subgroup. R 95.1 0.047 1E-06 48.4 5.8 23 129-151 3-25 (168)
380 cd04161 Arl2l1_Arl13_like Arl2 95.1 0.055 1.2E-06 48.0 6.2 21 130-150 2-22 (167)
381 cd01123 Rad51_DMC1_radA Rad51_ 95.1 0.054 1.2E-06 51.1 6.5 24 127-150 19-42 (235)
382 KOG0738 AAA+-type ATPase [Post 95.0 0.059 1.3E-06 52.9 6.6 67 126-193 244-315 (491)
383 TIGR03263 guanyl_kin guanylate 95.0 0.017 3.8E-07 51.9 2.9 23 128-150 2-24 (180)
384 cd02028 UMPK_like Uridine mono 95.0 0.017 3.7E-07 51.9 2.9 24 129-152 1-24 (179)
385 cd02021 GntK Gluconate kinase 95.0 0.018 3.8E-07 50.1 2.9 23 129-151 1-23 (150)
386 KOG2170 ATPase of the AAA+ sup 95.0 0.049 1.1E-06 51.7 5.8 89 106-194 82-190 (344)
387 cd00876 Ras Ras family. The R 95.0 0.059 1.3E-06 46.9 6.3 21 130-150 2-22 (160)
388 smart00178 SAR Sar1p-like memb 95.0 0.13 2.8E-06 46.4 8.7 36 115-150 4-40 (184)
389 PRK14527 adenylate kinase; Pro 95.0 0.025 5.3E-07 51.5 3.8 28 125-152 4-31 (191)
390 PF07726 AAA_3: ATPase family 95.0 0.017 3.6E-07 48.0 2.4 28 130-159 2-29 (131)
391 cd04140 ARHI_like ARHI subfami 95.0 0.058 1.2E-06 47.6 6.1 22 129-150 3-24 (165)
392 PRK14530 adenylate kinase; Pro 95.0 0.022 4.8E-07 53.0 3.4 25 128-152 4-28 (215)
393 PRK13949 shikimate kinase; Pro 95.0 0.023 4.9E-07 50.6 3.4 25 128-152 2-26 (169)
394 CHL00072 chlL photochlorophyll 94.9 0.03 6.5E-07 54.6 4.5 24 130-153 3-26 (290)
395 COG1124 DppF ABC-type dipeptid 94.9 0.02 4.4E-07 52.7 3.0 27 126-152 32-58 (252)
396 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 94.9 0.065 1.4E-06 47.3 6.3 22 129-150 4-25 (166)
397 PRK10416 signal recognition pa 94.9 0.039 8.4E-07 54.4 5.2 28 126-153 113-140 (318)
398 cd01868 Rab11_like Rab11-like. 94.9 0.066 1.4E-06 47.2 6.3 22 129-150 5-26 (165)
399 cd01864 Rab19 Rab19 subfamily. 94.9 0.07 1.5E-06 47.0 6.5 23 128-150 4-26 (165)
400 cd04138 H_N_K_Ras_like H-Ras/N 94.9 0.072 1.6E-06 46.5 6.4 23 129-151 3-25 (162)
401 COG0541 Ffh Signal recognition 94.9 0.13 2.9E-06 51.5 8.7 28 126-153 99-126 (451)
402 cd01862 Rab7 Rab7 subfamily. 94.9 0.065 1.4E-06 47.5 6.2 22 129-150 2-23 (172)
403 cd04156 ARLTS1 ARLTS1 subfamil 94.8 0.075 1.6E-06 46.5 6.5 22 130-151 2-23 (160)
404 PRK15429 formate hydrogenlyase 94.8 0.059 1.3E-06 59.5 6.9 47 106-152 376-424 (686)
405 PRK00300 gmk guanylate kinase; 94.8 0.025 5.5E-07 52.1 3.5 26 126-151 4-29 (205)
406 TIGR00073 hypB hydrogenase acc 94.8 0.031 6.7E-07 51.6 4.0 32 121-152 16-47 (207)
407 PRK12724 flagellar biosynthesi 94.8 0.074 1.6E-06 53.8 6.9 25 127-151 223-247 (432)
408 cd04108 Rab36_Rab34 Rab34/Rab3 94.8 0.081 1.8E-06 47.1 6.5 22 129-150 2-23 (170)
409 PRK05022 anaerobic nitric oxid 94.8 0.07 1.5E-06 56.5 7.1 48 105-152 186-235 (509)
410 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.048 1E-06 53.5 5.3 48 106-153 61-114 (358)
411 PRK03846 adenylylsulfate kinas 94.8 0.03 6.4E-07 51.4 3.7 28 124-151 21-48 (198)
412 PLN02348 phosphoribulokinase 94.8 0.059 1.3E-06 53.9 6.0 37 116-152 37-74 (395)
413 PRK10078 ribose 1,5-bisphospho 94.8 0.024 5.1E-07 51.4 3.0 24 128-151 3-26 (186)
414 PF00142 Fer4_NifH: 4Fe-4S iro 94.8 0.044 9.6E-07 51.4 4.8 26 128-153 1-26 (273)
415 KOG1532 GTPase XAB1, interacts 94.7 0.039 8.5E-07 51.5 4.3 31 126-156 18-48 (366)
416 cd04136 Rap_like Rap-like subf 94.7 0.064 1.4E-06 47.0 5.7 22 129-150 3-24 (163)
417 cd00464 SK Shikimate kinase (S 94.7 0.027 5.9E-07 49.1 3.2 23 130-152 2-24 (154)
418 cd04160 Arfrp1 Arfrp1 subfamil 94.7 0.1 2.2E-06 46.0 7.0 21 130-150 2-22 (167)
419 PRK13975 thymidylate kinase; P 94.7 0.029 6.2E-07 51.3 3.5 26 128-153 3-28 (196)
420 PRK05439 pantothenate kinase; 94.7 0.045 9.8E-07 53.4 4.9 27 125-151 84-110 (311)
421 cd01129 PulE-GspE PulE/GspE Th 94.7 0.12 2.5E-06 49.7 7.7 85 112-198 65-165 (264)
422 cd04117 Rab15 Rab15 subfamily. 94.7 0.088 1.9E-06 46.3 6.4 22 129-150 2-23 (161)
423 cd00820 PEPCK_HprK Phosphoenol 94.7 0.029 6.3E-07 45.3 2.9 22 127-148 15-36 (107)
424 PRK05057 aroK shikimate kinase 94.7 0.031 6.8E-07 49.9 3.5 25 128-152 5-29 (172)
425 COG1763 MobB Molybdopterin-gua 94.7 0.033 7.1E-07 48.7 3.5 28 127-154 2-29 (161)
426 TIGR01313 therm_gnt_kin carboh 94.7 0.023 4.9E-07 50.2 2.6 22 130-151 1-22 (163)
427 PRK12339 2-phosphoglycerate ki 94.7 0.032 7E-07 50.9 3.6 25 127-151 3-27 (197)
428 COG0542 clpA ATP-binding subun 94.6 0.095 2.1E-06 57.0 7.5 46 106-151 491-545 (786)
429 PRK04296 thymidine kinase; Pro 94.6 0.09 1.9E-06 47.8 6.5 25 128-152 3-27 (190)
430 cd04110 Rab35 Rab35 subfamily. 94.6 0.079 1.7E-06 48.5 6.1 23 128-150 7-29 (199)
431 cd04157 Arl6 Arl6 subfamily. 94.6 0.071 1.5E-06 46.7 5.7 21 130-150 2-22 (162)
432 cd00878 Arf_Arl Arf (ADP-ribos 94.6 0.1 2.2E-06 45.5 6.6 22 130-151 2-23 (158)
433 TIGR00176 mobB molybdopterin-g 94.6 0.032 6.9E-07 48.8 3.2 32 129-161 1-32 (155)
434 cd01861 Rab6 Rab6 subfamily. 94.6 0.1 2.3E-06 45.6 6.6 22 129-150 2-23 (161)
435 COG1703 ArgK Putative periplas 94.5 0.054 1.2E-06 51.5 4.8 41 116-156 38-80 (323)
436 PRK14722 flhF flagellar biosyn 94.5 0.11 2.3E-06 52.2 7.2 26 127-152 137-162 (374)
437 cd04150 Arf1_5_like Arf1-Arf5- 94.5 0.11 2.5E-06 45.5 6.7 20 130-149 3-22 (159)
438 cd04123 Rab21 Rab21 subfamily. 94.5 0.097 2.1E-06 45.7 6.3 23 129-151 2-24 (162)
439 PRK00771 signal recognition pa 94.5 0.08 1.7E-06 54.4 6.4 28 126-153 94-121 (437)
440 cd04145 M_R_Ras_like M-Ras/R-R 94.5 0.095 2.1E-06 46.0 6.2 22 129-150 4-25 (164)
441 TIGR02030 BchI-ChlI magnesium 94.5 0.058 1.3E-06 53.5 5.2 46 106-151 4-49 (337)
442 COG5238 RNA1 Ran GTPase-activa 94.5 0.02 4.4E-07 53.4 1.8 108 388-496 116-253 (388)
443 KOG4341 F-box protein containi 94.5 0.0041 8.8E-08 61.3 -2.8 92 430-524 162-255 (483)
444 cd02034 CooC The accessory pro 94.5 0.06 1.3E-06 44.5 4.5 24 130-153 2-25 (116)
445 PF03193 DUF258: Protein of un 94.5 0.045 9.7E-07 47.8 3.9 35 114-151 25-59 (161)
446 cd02027 APSK Adenosine 5'-phos 94.5 0.03 6.5E-07 48.7 2.8 24 129-152 1-24 (149)
447 CHL00081 chlI Mg-protoporyphyr 94.5 0.053 1.2E-06 53.8 4.9 48 104-151 15-62 (350)
448 cd04101 RabL4 RabL4 (Rab-like4 94.4 0.13 2.7E-06 45.2 6.9 20 130-149 3-22 (164)
449 cd04112 Rab26 Rab26 subfamily. 94.4 0.083 1.8E-06 48.0 5.9 21 130-150 3-23 (191)
450 TIGR02237 recomb_radB DNA repa 94.4 0.097 2.1E-06 48.3 6.4 26 127-152 12-37 (209)
451 cd01860 Rab5_related Rab5-rela 94.4 0.11 2.3E-06 45.7 6.4 23 129-151 3-25 (163)
452 cd04137 RheB Rheb (Ras Homolog 94.4 0.11 2.3E-06 46.6 6.6 23 128-150 2-24 (180)
453 cd01672 TMPK Thymidine monopho 94.4 0.09 2E-06 47.9 6.2 25 128-152 1-25 (200)
454 KOG0735 AAA+-type ATPase [Post 94.4 0.063 1.4E-06 56.7 5.4 65 128-194 702-772 (952)
455 PRK13948 shikimate kinase; Pro 94.4 0.041 9E-07 49.5 3.7 28 125-152 8-35 (182)
456 PRK13946 shikimate kinase; Pro 94.4 0.035 7.7E-07 50.2 3.3 25 128-152 11-35 (184)
457 PF08477 Miro: Miro-like prote 94.4 0.037 7.9E-07 45.8 3.2 24 130-153 2-25 (119)
458 cd03114 ArgK-like The function 94.4 0.053 1.1E-06 47.1 4.2 25 129-153 1-25 (148)
459 cd04118 Rab24 Rab24 subfamily. 94.4 0.081 1.7E-06 48.1 5.7 21 130-150 3-23 (193)
460 cd04141 Rit_Rin_Ric Rit/Rin/Ri 94.4 0.11 2.4E-06 46.3 6.4 22 129-150 4-25 (172)
461 PRK13231 nitrogenase reductase 94.4 0.043 9.4E-07 52.8 4.0 27 128-154 3-29 (264)
462 PF00158 Sigma54_activat: Sigm 94.4 0.069 1.5E-06 47.4 5.0 44 108-151 1-46 (168)
463 cd00879 Sar1 Sar1 subfamily. 94.3 0.093 2E-06 47.5 6.0 24 127-150 19-42 (190)
464 PTZ00133 ADP-ribosylation fact 94.3 0.17 3.7E-06 45.6 7.6 32 118-149 8-39 (182)
465 PLN02772 guanylate kinase 94.3 0.097 2.1E-06 52.4 6.4 26 126-151 134-159 (398)
466 cd04122 Rab14 Rab14 subfamily. 94.3 0.11 2.4E-06 45.8 6.4 22 129-150 4-25 (166)
467 COG1936 Predicted nucleotide k 94.3 0.034 7.3E-07 48.5 2.7 20 129-148 2-21 (180)
468 PLN02200 adenylate kinase fami 94.3 0.043 9.3E-07 51.6 3.7 27 126-152 42-68 (234)
469 cd01866 Rab2 Rab2 subfamily. 94.3 0.12 2.5E-06 45.9 6.4 23 128-150 5-27 (168)
470 cd01867 Rab8_Rab10_Rab13_like 94.3 0.11 2.4E-06 45.9 6.1 23 128-150 4-26 (167)
471 TIGR01041 ATP_syn_B_arch ATP s 94.3 0.091 2E-06 54.1 6.2 28 126-153 140-167 (458)
472 cd01393 recA_like RecA is a b 94.2 0.19 4E-06 47.0 8.0 26 127-152 19-44 (226)
473 PF03215 Rad17: Rad17 cell cyc 94.2 0.062 1.4E-06 56.5 5.1 48 105-152 18-70 (519)
474 cd03115 SRP The signal recogni 94.2 0.067 1.4E-06 47.8 4.7 25 129-153 2-26 (173)
475 cd00881 GTP_translation_factor 94.2 0.17 3.6E-06 45.5 7.4 23 130-152 2-24 (189)
476 PTZ00369 Ras-like protein; Pro 94.2 0.09 2E-06 47.7 5.6 22 129-150 7-28 (189)
477 PRK04182 cytidylate kinase; Pr 94.2 0.043 9.2E-07 49.2 3.4 24 129-152 2-25 (180)
478 COG1224 TIP49 DNA helicase TIP 94.2 0.093 2E-06 51.1 5.6 58 104-161 37-99 (450)
479 cd01135 V_A-ATPase_B V/A-type 94.2 0.11 2.5E-06 49.4 6.2 27 126-152 68-94 (276)
480 PRK09825 idnK D-gluconate kina 94.2 0.043 9.3E-07 49.2 3.3 25 128-152 4-28 (176)
481 PRK14738 gmk guanylate kinase; 94.2 0.044 9.5E-07 50.5 3.4 26 125-150 11-36 (206)
482 PF06068 TIP49: TIP49 C-termin 94.2 0.084 1.8E-06 52.1 5.4 76 104-179 22-104 (398)
483 COG1126 GlnQ ABC-type polar am 94.2 0.04 8.6E-07 49.9 2.9 27 126-152 27-53 (240)
484 TIGR00382 clpX endopeptidase C 94.1 0.17 3.7E-06 51.5 7.8 47 106-152 77-141 (413)
485 cd04114 Rab30 Rab30 subfamily. 94.1 0.18 3.9E-06 44.5 7.3 24 127-150 7-30 (169)
486 cd04106 Rab23_lke Rab23-like s 94.1 0.15 3.2E-06 44.6 6.7 21 130-150 3-23 (162)
487 cd04128 Spg1 Spg1p. Spg1p (se 94.1 0.11 2.3E-06 46.9 5.8 21 130-150 3-23 (182)
488 cd04116 Rab9 Rab9 subfamily. 94.1 0.14 3E-06 45.3 6.5 23 128-150 6-28 (170)
489 cd03281 ABC_MSH5_euk MutS5 hom 94.1 0.14 3E-06 47.5 6.6 98 127-224 29-158 (213)
490 cd01890 LepA LepA subfamily. 94.1 0.18 3.9E-06 45.0 7.3 23 128-150 1-23 (179)
491 PRK00698 tmk thymidylate kinas 94.1 0.14 2.9E-06 47.1 6.6 26 128-153 4-29 (205)
492 PLN02318 phosphoribulokinase/u 94.1 0.11 2.4E-06 54.6 6.4 28 124-151 62-89 (656)
493 cd04107 Rab32_Rab38 Rab38/Rab3 94.1 0.13 2.9E-06 47.1 6.5 21 130-150 3-23 (201)
494 cd01865 Rab3 Rab3 subfamily. 94.1 0.13 2.8E-06 45.3 6.2 23 129-151 3-25 (165)
495 PF03266 NTPase_1: NTPase; In 94.0 0.048 1E-06 48.4 3.3 23 130-152 2-24 (168)
496 PRK08149 ATP synthase SpaL; Va 94.0 0.1 2.3E-06 53.2 6.1 26 126-151 150-175 (428)
497 PRK14493 putative bifunctional 94.0 0.052 1.1E-06 52.2 3.8 28 128-155 2-29 (274)
498 PLN03071 GTP-binding nuclear p 94.0 0.096 2.1E-06 48.8 5.5 23 128-150 14-36 (219)
499 TIGR00390 hslU ATP-dependent p 94.0 0.069 1.5E-06 53.9 4.7 48 106-153 12-73 (441)
500 PRK13407 bchI magnesium chelat 94.0 0.071 1.5E-06 52.8 4.8 47 105-151 7-53 (334)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-64 Score=543.87 Aligned_cols=505 Identities=25% Similarity=0.358 Sum_probs=397.5
Q ss_pred ccccccchhhhccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----------------cccccccc-cchhhHhHH
Q 048213 4 SKESEVDEPKRREEEIEEYVEKCRASVNDVIDEAEKFIGVDARAN-----------------KHCFKGLC-PNLKTHRRL 65 (532)
Q Consensus 4 r~q~~l~~a~~~~~~~~~~~~~Wl~~l~~~ayd~ed~ld~~~~~~-----------------~~~~~~~~-~~~~~~~~~ 65 (532)
.+|+++.||++++ .....+..|...+++++|++||.++.|.... .-|+.++| .....-+.+
T Consensus 39 ~l~~~l~d~~a~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~ 117 (889)
T KOG4658|consen 39 ALQSALEDLDAKR-DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKY 117 (889)
T ss_pred HHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhH
Confidence 5788999999987 4578999999999999999999999763211 11233333 334445566
Q ss_pred HHHHHHHHHHHHHHHhcCccceeecc-cCCCCccccccccccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHH
Q 048213 66 SKEAERQKEAVVNVQEAGRFDRISYN-IIPDDSLLLSNKDYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPA 144 (532)
Q Consensus 66 a~~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA 144 (532)
++++-++...++.+..+..|..+... .+.....+.|..+... +|.+..++++.+.|.+++..+++|+||||+||||||
T Consensus 118 ~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~ 196 (889)
T KOG4658|consen 118 GKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLA 196 (889)
T ss_pred HHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHH
Confidence 77777777777777666666665542 2222233444444444 999999999999999888899999999999999999
Q ss_pred HHHHHHhh-ccCCCCEEEEeccCc---------------------------hhhHHHHHHHHhccCcEEEEEcCCCCccc
Q 048213 145 KEVAIKAE-NEKLFDRVIFVEESE---------------------------SGRARSLCNRLKKEKMILVILDNIWENLD 196 (532)
Q Consensus 145 ~~v~~~~~-~~~~F~~~~~~~~~~---------------------------~~~~~~l~~~l~~~k~~LlVlDdv~~~~~ 196 (532)
+.++|+.. ++.+||.++|...+. ......+.+.|. +||||||+||||+..+
T Consensus 197 ~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~d 275 (889)
T KOG4658|consen 197 RQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVD 275 (889)
T ss_pred HHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-cCceEEEEeccccccc
Confidence 99999988 999999999444322 234556777777 6999999999999999
Q ss_pred ccccccccCCCCCCeEEEEeecChHHhhhcCCCCceEEccCCCHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHHcCCc
Q 048213 197 FHAVGIPHGDDHKGCKVLLTARSLDVLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDY--IEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 197 ~~~l~~~~~~~~~gs~ilvTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~gl 274 (532)
|+.+..|+|...+||+|++|||++.|+...+++...++++.|++++||+||.+.+|.. ...+.++++|++|+++|+|+
T Consensus 276 w~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GL 355 (889)
T KOG4658|consen 276 WDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGL 355 (889)
T ss_pred HHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCCh
Confidence 9999999999999999999999999987668888899999999999999999999943 33345899999999999999
Q ss_pred hHHHHHHHHHHccC-ChHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhcCCCCCchHHHHHHHHhhh---hcCChhHHH
Q 048213 275 PVSIVTVARALRNK-RLFDWKDALEQLRWPSSTNFKDIQPTAYKAIELSYVKLDGDELKNIFLLIGYT---AIASIDDLL 350 (532)
Q Consensus 275 PLai~~~~~~l~~~-~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~f~~lalF---~~i~~~~Li 350 (532)
|||+.++|+.++.+ +..+|+++.+.+.+.......+....++.++.+||++||++ +|.||+|||+| +.|+++.|+
T Consensus 356 PLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li 434 (889)
T KOG4658|consen 356 PLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLI 434 (889)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHH
Confidence 99999999999988 88899999999987655555566789999999999999977 99999999999 999999999
Q ss_pred HHHHHhcccCC---cccHHHHHhhHHhhhhccccc---------------------------------------------
Q 048213 351 MYGMGLGLFQG---IKRMEVARARVVIDLTYMNLL--------------------------------------------- 382 (532)
Q Consensus 351 ~~w~aeg~~~~---~~~~~~~~~~~~l~l~~~~l~--------------------------------------------- 382 (532)
.+|+||||+.+ ....++.+..++-++...++-
T Consensus 435 ~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~ 514 (889)
T KOG4658|consen 435 EYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLS 514 (889)
T ss_pred HHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcc
Confidence 99999999975 234444444422222221110
Q ss_pred CCchhhhccccccEEEeccccccCcccccccccccEEeecccc--cccc------ccCCcceEEeccccccCCCCCcccc
Q 048213 383 SLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNE--LTRA------GSSQLKHLSVRGLRASAPNPTESEV 454 (532)
Q Consensus 383 ~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~--l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~ 454 (532)
..|. ..+....|.+.+.++.+.....-.+.++|++|-+.+|. +..+ .++.|++|+|++|.. ...+|.+++
T Consensus 515 ~~~~-~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~ 592 (889)
T KOG4658|consen 515 EIPQ-VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIG 592 (889)
T ss_pred cccc-ccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHh
Confidence 0111 11223445666666665554444455689999888875 3333 689999999999866 788999999
Q ss_pred cCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 455 ALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 455 ~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
+|-+||||+|+++.++.+|.++ .+|+.|.+|++..+..+..+ |... ..|++|++|.+-..
T Consensus 593 ~Li~LryL~L~~t~I~~LP~~l-----~~Lk~L~~Lnl~~~~~l~~~-~~i~-~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTGISHLPSGL-----GNLKKLIYLNLEVTGRLESI-PGIL-LELQSLRVLRLPRS 652 (889)
T ss_pred hhhhhhcccccCCCccccchHH-----HHHHhhheeccccccccccc-cchh-hhcccccEEEeecc
Confidence 9999999999999999999998 88999999999988887777 6655 67999999988754
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.8e-51 Score=464.36 Aligned_cols=471 Identities=21% Similarity=0.258 Sum_probs=323.5
Q ss_pred Ccccccc-ccchhhhccc--cchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhHhHHHHHHHHHHHHHH
Q 048213 1 SDVSKES-EVDEPKRREE--EIEEYVEKCRASVNDVIDEAEKFIGVDARANKHCFKGLCPNLKTHRRLSKEAERQKEAVV 77 (532)
Q Consensus 1 ~~~r~q~-~l~~a~~~~~--~~~~~~~~Wl~~l~~~ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~ 77 (532)
||||.|. .+++|..+.. ...+.++.|...+.++|.-+.-..+ .. +. =++-|+++ ++
T Consensus 111 ~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~---------------~~--~~-E~~~i~~I---v~ 169 (1153)
T PLN03210 111 SHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQ---------------NW--PN-EAKMIEEI---AN 169 (1153)
T ss_pred HHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecC---------------CC--CC-HHHHHHHH---HH
Confidence 6899999 8888866542 2457899999999999874321110 00 11 12333333 33
Q ss_pred HHHhcCccceeecccCCCCccccccccccccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhhccC
Q 048213 78 NVQEAGRFDRISYNIIPDDSLLLSNKDYEAFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK 155 (532)
Q Consensus 78 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~ 155 (532)
+|.+. .. ..+..+...++||+..++++..++. .+++++|+|+||||+||||||+++|+....
T Consensus 170 ~v~~~-----l~---------~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-- 233 (1153)
T PLN03210 170 DVLGK-----LN---------LTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-- 233 (1153)
T ss_pred HHHHh-----hc---------cccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--
Confidence 34322 01 0122335679999999999998876 567899999999999999999999997654
Q ss_pred CCCEEEEecc-----Cc-----------h---------------------hhHHHHHHHHhccCcEEEEEcCCCCccccc
Q 048213 156 LFDRVIFVEE-----SE-----------S---------------------GRARSLCNRLKKEKMILVILDNIWENLDFH 198 (532)
Q Consensus 156 ~F~~~~~~~~-----~~-----------~---------------------~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~ 198 (532)
.|+..++... .. . .....+++++. ++|+||||||||+..+|+
T Consensus 234 ~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~ 312 (1153)
T PLN03210 234 QFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLK-HRKVLIFIDDLDDQDVLD 312 (1153)
T ss_pred cCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHh-CCeEEEEEeCCCCHHHHH
Confidence 4776553211 00 0 01134566666 599999999999999999
Q ss_pred ccccccCCCCCCeEEEEeecChHHhhhcCCCCceEEccCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHcCCchHH
Q 048213 199 AVGIPHGDDHKGCKVLLTARSLDVLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDY-IEGSEFKWVAKDVAKKCAGLPVS 277 (532)
Q Consensus 199 ~l~~~~~~~~~gs~ilvTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~glPLa 277 (532)
.+.....+.++||+||||||++.++. ..+...+|.++.|++++||+||+++||.. .+...+.+++++|+++|+|+|||
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 99776666788999999999999975 35566899999999999999999999943 34456789999999999999999
Q ss_pred HHHHHHHHccCChHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhcCCCCCchHHHHHHHHhhh-hcCChhHHHHHHHHh
Q 048213 278 IVTVARALRNKRLFDWKDALEQLRWPSSTNFKDIQPTAYKAIELSYVKLDGDELKNIFLLIGYT-AIASIDDLLMYGMGL 356 (532)
Q Consensus 278 i~~~~~~l~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~f~~lalF-~~i~~~~Li~~w~ae 356 (532)
|+++|++|++++.++|..+++++... ....+..+|++||+.|+++..|.||+++|+| ...+.+. +..|.+.
T Consensus 392 l~vlgs~L~~k~~~~W~~~l~~L~~~-------~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~ 463 (1153)
T PLN03210 392 LNVLGSYLRGRDKEDWMDMLPRLRNG-------LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLAN 463 (1153)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC-------ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHh
Confidence 99999999999999999999998742 2457999999999999864379999999999 4444443 4556555
Q ss_pred cccCCcccH----------------------HHHHhhHHh-------------------h-hhcc----cc---------
Q 048213 357 GLFQGIKRM----------------------EVARARVVI-------------------D-LTYM----NL--------- 381 (532)
Q Consensus 357 g~~~~~~~~----------------------~~~~~~~~l-------------------~-l~~~----~l--------- 381 (532)
+.......+ .+++...+. + +..+ .+
T Consensus 464 ~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 464 SDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred cCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 433211111 111111000 0 0000 00
Q ss_pred -cC--C-chhhhccccccEEEeccc-------------------------------cccCcccccccccccEEeeccccc
Q 048213 382 -LS--L-PSSLGLLTNLQTLCLYYC-------------------------------KLQDTSVLGELKILEILRLRVNEL 426 (532)
Q Consensus 382 -~~--l-p~~~~~l~~L~~L~l~~~-------------------------------~l~~~~~i~~l~~L~~L~l~~~~l 426 (532)
.+ + +..|..|.+|++|.+..+ .+..++..-...+|+.|++.+|++
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKL 623 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccc
Confidence 00 1 223556666666666433 222211112345677777777766
Q ss_pred ccc-----ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCc-ccccccccccccccccCCCccEEEeccCCCCCc
Q 048213 427 TRA-----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSI-NIERIWQNQVAAMSCGIQNLKRLILFNCWNLTC 500 (532)
Q Consensus 427 ~~~-----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~ 500 (532)
..+ .+++|+.|+|+++.. ....| .++.+++|++|+|++| .+..+|.++ .+|++|+.|++++|+.++.
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~-l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si-----~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKN-LKEIP-DLSMATNLETLKLSDCSSLVELPSSI-----QYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred cccccccccCCCCCEEECCCCCC-cCcCC-ccccCCcccEEEecCCCCccccchhh-----hccCCCCEEeCCCCCCcCc
Confidence 655 567788888877654 33343 4667788888888877 677777766 6778888888888888888
Q ss_pred cchhhhhhcCCCccEEEeecCCcccccc
Q 048213 501 LFTSSIISSFVGLQCLEICECPVLKEII 528 (532)
Q Consensus 501 l~p~~~~~~L~~L~~L~l~~c~~L~~i~ 528 (532)
+ |..+ ++++|++|++++|..++.++
T Consensus 697 L-p~~i--~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 697 L-PTGI--NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred c-CCcC--CCCCCCEEeCCCCCCccccc
Confidence 8 5543 67888888888887766543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.4e-41 Score=331.60 Aligned_cols=249 Identities=30% Similarity=0.459 Sum_probs=195.8
Q ss_pred chHHHHHHHHHhcC--CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe-------------------------
Q 048213 111 RMSTFNDILNALKS--PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV------------------------- 163 (532)
Q Consensus 111 R~~~~~~i~~~l~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~------------------------- 163 (532)
|+.++++|.++|.+ ++.++|+|+||||+||||||.+++++...+.+|+.++|.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 789999999999999999999999998888889887711
Q ss_pred ---ccCchhhHHHHHHHHhccCcEEEEEcCCCCcccccccccccCCCCCCeEEEEeecChHHhhhcCCCCceEEccCCCH
Q 048213 164 ---EESESGRARSLCNRLKKEKMILVILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDVLSRKMDSQQDFWVGVLKE 240 (532)
Q Consensus 164 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v~~~~~~~~~~~~l~~L~~ 240 (532)
..+.......+++.|. ++++||||||||+...|+.+...++....|++||||||+..++.........+.+++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1123345567777777 579999999999999999998888877889999999999988753333367899999999
Q ss_pred HHHHHHHHHHhCCCC--CCcchHHHHHHHHHHcCCchHHHHHHHHHHccC-ChHHHHHHHHHhcCCCCCCCCCchhHHHH
Q 048213 241 DEAWSLFKKMAGDYI--EGSEFKWVAKDVAKKCAGLPVSIVTVARALRNK-RLFDWKDALEQLRWPSSTNFKDIQPTAYK 317 (532)
Q Consensus 241 ~~~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~l~~~~~~~~~~~~~~~~~~~~ 317 (532)
++|++||.+.++... ..+..++.+++|+++|+|+||||+++|++++.+ +..+|..+++.+...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999998433 345567789999999999999999999999755 789999999887754322 2224688999
Q ss_pred HHHhhcCCCCCchHHHHHHHHhhh---hcCChhHHHHHHHHhcccCCc
Q 048213 318 AIELSYVKLDGDELKNIFLLIGYT---AIASIDDLLMYGMGLGLFQGI 362 (532)
Q Consensus 318 ~l~~sy~~L~~~~~k~~f~~lalF---~~i~~~~Li~~w~aeg~~~~~ 362 (532)
++.+||+.||++ +|+||.|||+| ..|+.+.++++|+++||++..
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999998 99999999999 679999999999999999753
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=4.4e-15 Score=125.90 Aligned_cols=140 Identities=21% Similarity=0.245 Sum_probs=71.0
Q ss_pred hhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEeecccccccc-----ccCCcceEEeccccccCC
Q 048213 374 IDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLRASAP 447 (532)
Q Consensus 374 l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~~~~~ 447 (532)
+.++.|.++.+|+.|..+.+|+.|++.+|++++ |..|+.+++|++|++.-|.+..+ .++.|+.|+|..|+....
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence 344444444455555555555555555555544 44455555555555544444333 344455555554444223
Q ss_pred CCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 448 NPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 448 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
..|..|-.+..|+.|.|+.|.++-+|+.+ ++|++||+|.+++ +.+-++ |..+ |.|+.|+.|.|.++
T Consensus 118 ~lpgnff~m~tlralyl~dndfe~lp~dv-----g~lt~lqil~lrd-ndll~l-pkei-g~lt~lrelhiqgn 183 (264)
T KOG0617|consen 118 SLPGNFFYMTTLRALYLGDNDFEILPPDV-----GKLTNLQILSLRD-NDLLSL-PKEI-GDLTRLRELHIQGN 183 (264)
T ss_pred cCCcchhHHHHHHHHHhcCCCcccCChhh-----hhhcceeEEeecc-CchhhC-cHHH-HHHHHHHHHhcccc
Confidence 34444555555555555555555555555 5555555555555 334445 5554 55555555555543
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=1.2e-13 Score=117.33 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=130.9
Q ss_pred CChhHHHHHHHHhcccC-CcccHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEee
Q 048213 344 ASIDDLLMYGMGLGLFQ-GIKRMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRL 421 (532)
Q Consensus 344 i~~~~Li~~w~aeg~~~-~~~~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l 421 (532)
|..+.+.++-...+-+. -...+.++.+..++++.+|++.++|.+++.++.|+.|++..|++.. |..++.++-|++||+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 44455555555555443 2356778888899999999999999999999999999999999887 789999999999999
Q ss_pred cccccccc-------ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEecc
Q 048213 422 RVNELTRA-------GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFN 494 (532)
Q Consensus 422 ~~~~l~~~-------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~ 494 (532)
..|++.+- .+..||.|.|++|.+ .-.|..++++.+|+.|.++.|++-++|..+ +.|..|+.|.+.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll~lpkei-----g~lt~lrelhiqg 182 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLSLPKEI-----GDLTRLRELHIQG 182 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchhhCcHHH-----HHHHHHHHHhccc
Confidence 99988775 567899999999988 668889999999999999999999999998 8899999999998
Q ss_pred CCCCCccchh
Q 048213 495 CWNLTCLFTS 504 (532)
Q Consensus 495 c~~l~~l~p~ 504 (532)
+.+..+||+
T Consensus 183 -nrl~vlppe 191 (264)
T KOG0617|consen 183 -NRLTVLPPE 191 (264)
T ss_pred -ceeeecChh
Confidence 668999443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.32 E-value=1.9e-13 Score=137.17 Aligned_cols=149 Identities=26% Similarity=0.316 Sum_probs=101.6
Q ss_pred HHHHHhhHHhhhhcccccCCchh-hhccccccEEEeccccccC-cccccccccccEEeecccccccc------ccCCcce
Q 048213 365 MEVARARVVIDLTYMNLLSLPSS-LGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA------GSSQLKH 436 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~ 436 (532)
+|...+.-++++++|++..+|.+ +-+|+.|-+|++++|++.. |+-+..|.+|++|.|++|.+... .+++|..
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 44455556777888888777766 5677777788888887777 67777788888888887754433 4556677
Q ss_pred EEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEE
Q 048213 437 LSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCL 516 (532)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L 516 (532)
|++++.+....+.|.++..+.+|+.+|||.|++..+|++. +++++|+.|+|++ +.++++ .... +...+|++|
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl-----y~l~~LrrLNLS~-N~iteL-~~~~-~~W~~lEtL 273 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL-----YKLRNLRRLNLSG-NKITEL-NMTE-GEWENLETL 273 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHH-----hhhhhhheeccCc-Cceeee-eccH-HHHhhhhhh
Confidence 7777765545667777777777777777777777777776 6677777777776 445555 3333 455566666
Q ss_pred EeecC
Q 048213 517 EICEC 521 (532)
Q Consensus 517 ~l~~c 521 (532)
++|.+
T Consensus 274 NlSrN 278 (1255)
T KOG0444|consen 274 NLSRN 278 (1255)
T ss_pred ccccc
Confidence 66543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.31 E-value=2.4e-13 Score=136.46 Aligned_cols=155 Identities=25% Similarity=0.244 Sum_probs=141.4
Q ss_pred ccHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCc-ccccccccccEEeecccccccc-----ccCCcce
Q 048213 363 KRMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDT-SVLGELKILEILRLRVNELTRA-----GSSQLKH 436 (532)
Q Consensus 363 ~~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~-~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~ 436 (532)
.+++++++.+-+|++.|+++.+|+.+.++.+|+.|++++|+++.+ ..++.-.+|++|+++.|+++.+ +++.|+.
T Consensus 216 tsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTK 295 (1255)
T ss_pred CchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHH
Confidence 578899999999999999999999999999999999999999884 4567778999999999999988 7899999
Q ss_pred EEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEE
Q 048213 437 LSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCL 516 (532)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L 516 (532)
|.+.+|......+|..++.|.+|+.+..++|.++-+|+++ |.+..|+.|.|+ |+.|-++ |..+ .-|+.|+.|
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEgl-----cRC~kL~kL~L~-~NrLiTL-PeaI-HlL~~l~vL 367 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGL-----CRCVKLQKLKLD-HNRLITL-PEAI-HLLPDLKVL 367 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhh-----hhhHHHHHhccc-ccceeec-hhhh-hhcCCccee
Confidence 9999997755678999999999999999999999999998 889999999998 6889999 8887 789999999
Q ss_pred EeecCCccc
Q 048213 517 EICECPVLK 525 (532)
Q Consensus 517 ~l~~c~~L~ 525 (532)
++.++|+|.
T Consensus 368 DlreNpnLV 376 (1255)
T KOG0444|consen 368 DLRENPNLV 376 (1255)
T ss_pred eccCCcCcc
Confidence 999999874
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=4.8e-13 Score=127.95 Aligned_cols=171 Identities=22% Similarity=0.229 Sum_probs=133.2
Q ss_pred hHHHHHHHHhcccCCc--ccHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEeecc
Q 048213 347 DDLLMYGMGLGLFQGI--KRMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRV 423 (532)
Q Consensus 347 ~~Li~~w~aeg~~~~~--~~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~ 423 (532)
..|..+.+++++++-. ....++....++|+.+|.+.++|..++.+++|.+|++++|.++. |..++++ .|+.|-+.|
T Consensus 228 s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 228 SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcC
Confidence 3456666777766522 22334445578888888888888888888888888888888888 6778888 888888888
Q ss_pred cccccc--------------------------------------------------------------------------
Q 048213 424 NELTRA-------------------------------------------------------------------------- 429 (532)
Q Consensus 424 ~~l~~~-------------------------------------------------------------------------- 429 (532)
|.+..+
T Consensus 307 NPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~ 386 (565)
T KOG0472|consen 307 NPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK 386 (565)
T ss_pred CchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh
Confidence 844333
Q ss_pred ----------------------------------------------ccCCcceEEeccccccCCCCCcccccCCCCCEEe
Q 048213 430 ----------------------------------------------GSSQLKHLSVRGLRASAPNPTESEVALPKLETVC 463 (532)
Q Consensus 430 ----------------------------------------------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 463 (532)
.+++|..|+|++|-. ...|..++.+..|++|+
T Consensus 387 ~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L--n~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 387 SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLL--NDLPEEMGSLVRLQTLN 464 (565)
T ss_pred hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchh--hhcchhhhhhhhhheec
Confidence 567899999998865 77888889999999999
Q ss_pred cCCcccccccccc-------------------cccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCc
Q 048213 464 LSSINIERIWQNQ-------------------VAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPV 523 (532)
Q Consensus 464 L~~~~l~~lp~~~-------------------~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~ 523 (532)
|+.|.+..+|..+ .+....++.+|.+|||.+ +.+..+ |..+ |+|++|++|.|+|+|-
T Consensus 465 lS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~I-Pp~L-gnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 465 LSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQI-PPIL-GNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhC-Chhh-ccccceeEEEecCCcc
Confidence 9999988888753 111245789999999986 779999 6666 9999999999999873
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.25 E-value=9.5e-12 Score=142.45 Aligned_cols=149 Identities=23% Similarity=0.199 Sum_probs=101.2
Q ss_pred HHHhhHHhhhhccccc-CCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceE
Q 048213 367 VARARVVIDLTYMNLL-SLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHL 437 (532)
Q Consensus 367 ~~~~~~~l~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L 437 (532)
.+...+++++.+|.+. .+|..++++++|++|++++|.+.. |..++++++|++|++++|++... .+++|++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 3444566677777664 356667777777777777776654 55667777777777777766543 56777777
Q ss_pred EeccccccCCCCCcccccCCCCCEEecCCcccc-cccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEE
Q 048213 438 SVRGLRASAPNPTESEVALPKLETVCLSSINIE-RIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCL 516 (532)
Q Consensus 438 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L 516 (532)
++++|+. ....|..++++++|++|+|++|.+. .+|.++ .++++|++|+|++|.....+ |..+ +++++|++|
T Consensus 242 ~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~~-p~~~-~~l~~L~~L 313 (968)
T PLN00113 242 DLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-----FSLQKLISLDLSDNSLSGEI-PELV-IQLQNLEIL 313 (968)
T ss_pred ECcCcee-ccccChhHhCCCCCCEEECcCCeeeccCchhH-----hhccCcCEEECcCCeeccCC-ChhH-cCCCCCcEE
Confidence 7777766 4556667777777777777777665 345444 56778888888876644455 6665 678888888
Q ss_pred EeecCCc
Q 048213 517 EICECPV 523 (532)
Q Consensus 517 ~l~~c~~ 523 (532)
++++|..
T Consensus 314 ~l~~n~~ 320 (968)
T PLN00113 314 HLFSNNF 320 (968)
T ss_pred ECCCCcc
Confidence 8877753
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.24 E-value=1.5e-11 Score=140.74 Aligned_cols=141 Identities=22% Similarity=0.234 Sum_probs=75.4
Q ss_pred HHhhhhcccccC-CchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccc
Q 048213 372 VVIDLTYMNLLS-LPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGL 442 (532)
Q Consensus 372 ~~l~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~ 442 (532)
+++++.+|++.. +|. +.+++|++|++++|.+.. +..++++++|++|++++|.+... .+++|++|++++|
T Consensus 121 ~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred CEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 444444444432 222 334555555555555443 34455555566666555554322 4555666666655
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccc-cccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIE-RIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
.. ....|..++++++|++|+|++|++. .+|..+ .++++|++|+|++|.....+ |..+ +++++|++|++++|
T Consensus 199 ~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~-p~~l-~~l~~L~~L~L~~n 270 (968)
T PLN00113 199 QL-VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-----GGLTSLNHLDLVYNNLTGPI-PSSL-GNLKNLQYLFLYQN 270 (968)
T ss_pred CC-cCcCChHHcCcCCccEEECcCCccCCcCChhH-----hcCCCCCEEECcCceecccc-ChhH-hCCCCCCEEECcCC
Confidence 54 3444555556666666666666544 344443 55666666666665533344 5555 56666666666665
Q ss_pred C
Q 048213 522 P 522 (532)
Q Consensus 522 ~ 522 (532)
.
T Consensus 271 ~ 271 (968)
T PLN00113 271 K 271 (968)
T ss_pred e
Confidence 4
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.15 E-value=2.3e-10 Score=108.32 Aligned_cols=172 Identities=17% Similarity=0.205 Sum_probs=97.3
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE--------------E-----------
Q 048213 108 FESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI--------------F----------- 162 (532)
Q Consensus 108 ~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--------------~----------- 162 (532)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+...... +.... +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-YKVVYIDFLEESNESSLRSFIEETSLADELS 79 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-ECCCHHCCTTBSHHHHHHHHHHHHHHHCHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-CcEEEEecccchhhhHHHHHHHHHHHHHHHH
Confidence 789999999999988877778999999999999999999998763221 10000 0
Q ss_pred -------ec-----------cCchhhHHHHHHHHhc-cCcEEEEEcCCCCcc-ccc---c----cccccCC--CCCCeEE
Q 048213 163 -------VE-----------ESESGRARSLCNRLKK-EKMILVILDNIWENL-DFH---A----VGIPHGD--DHKGCKV 213 (532)
Q Consensus 163 -------~~-----------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~~~---~----l~~~~~~--~~~gs~i 213 (532)
.. .........+.+.+.. +++++||+||+.... ..+ . +...+.. ......+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 159 (234)
T PF01637_consen 80 EALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSI 159 (234)
T ss_dssp HHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEE
T ss_pred HHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceE
Confidence 00 0011223444444442 456999999998766 211 1 1111111 2233445
Q ss_pred EEeecChHHhhh-------cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHH
Q 048213 214 LLTARSLDVLSR-------KMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVT 280 (532)
Q Consensus 214 lvTtr~~~v~~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 280 (532)
+++......... .......+.+++|+.+++++++..........+.-++..++|+..+||+|..|..
T Consensus 160 v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 160 VITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 555555444322 1233345999999999999999987543311122366679999999999988754
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.04 E-value=5.9e-10 Score=128.61 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 048213 24 EKCRASVNDVIDEAEKFIGVDA 45 (532)
Q Consensus 24 ~~Wl~~l~~~ayd~ed~ld~~~ 45 (532)
..|-.+.+-+.+-|+|+++...
T Consensus 155 ~~~~~E~~~i~~Iv~~v~~~l~ 176 (1153)
T PLN03210 155 QNWPNEAKMIEEIANDVLGKLN 176 (1153)
T ss_pred CCCCCHHHHHHHHHHHHHHhhc
Confidence 3466677777777777777654
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.01 E-value=4e-09 Score=104.99 Aligned_cols=175 Identities=14% Similarity=0.026 Sum_probs=105.8
Q ss_pred cccccccchHHHHHHHHHhc-----CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHH
Q 048213 104 DYEAFESRMSTFNDILNALK-----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRL 178 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l 178 (532)
....|+|+++.++.+..++. ......+.|+|++|+|||+||+.+++..... +................+...+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~~~~~~~~~~~~~~l~~~l~~l 100 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--IRITSGPALEKPGDLAAILTNL 100 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--eEEEecccccChHHHHHHHHhc
Confidence 45779999999999877765 2345688999999999999999999986543 2111111111111222222333
Q ss_pred hccCcEEEEEcCCCCcc--cccccccc---------cCC----------CCCCeEEEEeecChHHhhhc-CCCCceEEcc
Q 048213 179 KKEKMILVILDNIWENL--DFHAVGIP---------HGD----------DHKGCKVLLTARSLDVLSRK-MDSQQDFWVG 236 (532)
Q Consensus 179 ~~~k~~LlVlDdv~~~~--~~~~l~~~---------~~~----------~~~gs~ilvTtr~~~v~~~~-~~~~~~~~l~ 236 (532)
. +..+|++|++.... ..+.+... +.. ..+.+-|..|++...+.... ......+.++
T Consensus 101 ~--~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~ 178 (328)
T PRK00080 101 E--EGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLE 178 (328)
T ss_pred c--cCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecC
Confidence 2 45688899987532 11111000 000 01234455666644332111 1123578999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHH
Q 048213 237 VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVAR 283 (532)
Q Consensus 237 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 283 (532)
+++.++..+++.+.+.... ..-.++....|++.|+|.|-.+..+..
T Consensus 179 ~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 179 FYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred CCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 9999999999998876322 223356789999999999965544444
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.01 E-value=2.3e-11 Score=116.61 Aligned_cols=145 Identities=26% Similarity=0.280 Sum_probs=117.0
Q ss_pred HHHhhHHhhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEeecccccccc----ccCCcceEEecc
Q 048213 367 VARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRG 441 (532)
Q Consensus 367 ~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~ 441 (532)
.......+++.++.+..+|+..-.++.|+.|+...|.+.. |+.++.+.+|..|++..|.+..+ ++..|+.|+++.
T Consensus 158 ~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGE 237 (565)
T ss_pred HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcc
Confidence 3344456777788888887776668888888888887777 77888888888888888887776 677888888888
Q ss_pred ccccCCCCCcccc-cCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeec
Q 048213 442 LRASAPNPTESEV-ALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICE 520 (532)
Q Consensus 442 ~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~ 520 (532)
|++ .-.|...+ ++++|..|||+.|.++++|+++ +.|++|..||+++ +.+..+ |..+ |+| +|+.|-+.|
T Consensus 238 N~i--~~lpae~~~~L~~l~vLDLRdNklke~Pde~-----clLrsL~rLDlSN-N~is~L-p~sL-gnl-hL~~L~leG 306 (565)
T KOG0472|consen 238 NQI--EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-----CLLRSLERLDLSN-NDISSL-PYSL-GNL-HLKFLALEG 306 (565)
T ss_pred cHH--HhhHHHHhcccccceeeeccccccccCchHH-----HHhhhhhhhcccC-CccccC-Cccc-ccc-eeeehhhcC
Confidence 865 44555554 8999999999999999999998 8899999999996 668999 7776 888 899999988
Q ss_pred CC
Q 048213 521 CP 522 (532)
Q Consensus 521 c~ 522 (532)
+|
T Consensus 307 NP 308 (565)
T KOG0472|consen 307 NP 308 (565)
T ss_pred Cc
Confidence 87
No 15
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.01 E-value=1.2e-08 Score=100.71 Aligned_cols=172 Identities=17% Similarity=0.039 Sum_probs=104.1
Q ss_pred cccccchHHHHHHHHHhc-----CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe-ccCchhhHHHHHHHHh
Q 048213 106 EAFESRMSTFNDILNALK-----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV-EESESGRARSLCNRLK 179 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~-~~~~~~~~~~l~~~l~ 179 (532)
..|+|+++.++++..++. ......+.++|++|+|||+||+.+++..... |...... ..........+ ..+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~~~~~~~~~~~~~~l~~~l-~~~- 79 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--LKITSGPALEKPGDLAAIL-TNL- 79 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--EEEeccchhcCchhHHHHH-Hhc-
Confidence 579999999999988886 3445678899999999999999999876543 2111000 01111122222 222
Q ss_pred ccCcEEEEEcCCCCcc--ccccccccc-------------------CCCCCCeEEEEeecChHHhhhc-CCCCceEEccC
Q 048213 180 KEKMILVILDNIWENL--DFHAVGIPH-------------------GDDHKGCKVLLTARSLDVLSRK-MDSQQDFWVGV 237 (532)
Q Consensus 180 ~~k~~LlVlDdv~~~~--~~~~l~~~~-------------------~~~~~gs~ilvTtr~~~v~~~~-~~~~~~~~l~~ 237 (532)
+...+|++|++.... ..+.+...+ ....+.+-|..||+...+.... ......+.+++
T Consensus 80 -~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~ 158 (305)
T TIGR00635 80 -EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEF 158 (305)
T ss_pred -ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCC
Confidence 245688888886431 111111000 0011245555677764432211 11235678999
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHH
Q 048213 238 LKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVAR 283 (532)
Q Consensus 238 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 283 (532)
++.++..+++.+.+.... ..-.++....|++.|+|.|-.+..+..
T Consensus 159 l~~~e~~~il~~~~~~~~-~~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 159 YTVEELAEIVSRSAGLLN-VEIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred CCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 999999999998876321 223356788999999999976654444
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.00 E-value=2.9e-08 Score=96.21 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=96.3
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-----------------Eecc----CchhhHHHHHH----HH
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-----------------FVEE----SESGRARSLCN----RL 178 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-----------------~~~~----~~~~~~~~l~~----~l 178 (532)
..+...+.|+|++|+||||+++.+++...........+ +... ........+.+ ..
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34456899999999999999999998765322111111 0000 00111223332 23
Q ss_pred hccCcEEEEEcCCCCcc--cccccccc--c-CCCCCCeEEEEeecChHHhh--------hcCCCCceEEccCCCHHHHHH
Q 048213 179 KKEKMILVILDNIWENL--DFHAVGIP--H-GDDHKGCKVLLTARSLDVLS--------RKMDSQQDFWVGVLKEDEAWS 245 (532)
Q Consensus 179 ~~~k~~LlVlDdv~~~~--~~~~l~~~--~-~~~~~gs~ilvTtr~~~v~~--------~~~~~~~~~~l~~L~~~~~~~ 245 (532)
..++++++|+||++... .++.+... + ........|++|........ ........+.+.+++.++..+
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 34688999999998763 34443211 1 11122334455554332110 001113467899999999999
Q ss_pred HHHHHhC--C-CCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 048213 246 LFKKMAG--D-YIEGSEFKWVAKDVAKKCAGLPVSIVTVARAL 285 (532)
Q Consensus 246 Lf~~~~~--~-~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 285 (532)
++...+. + .....-..+..+.|++.++|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9887654 1 11122346789999999999999999988765
No 17
>PF05729 NACHT: NACHT domain
Probab=98.99 E-value=2.9e-09 Score=94.97 Aligned_cols=124 Identities=22% Similarity=0.231 Sum_probs=80.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCC----EEEEe------ccCc-hhh---------------HHHHHHHHhcc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFD----RVIFV------EESE-SGR---------------ARSLCNRLKKE 181 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~~~------~~~~-~~~---------------~~~l~~~l~~~ 181 (532)
|++.|+|.+|+||||+++.++.......... ..++. .... ... ...+...+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 5899999999999999999998776654333 22200 0000 001 11122333446
Q ss_pred CcEEEEEcCCCCccc---------ccccccccCC--CCCCeEEEEeecChHH--hhhcCCCCceEEccCCCHHHHHHHHH
Q 048213 182 KMILVILDNIWENLD---------FHAVGIPHGD--DHKGCKVLLTARSLDV--LSRKMDSQQDFWVGVLKEDEAWSLFK 248 (532)
Q Consensus 182 k~~LlVlDdv~~~~~---------~~~l~~~~~~--~~~gs~ilvTtr~~~v--~~~~~~~~~~~~l~~L~~~~~~~Lf~ 248 (532)
++++||+|++++... +..+...+.. ..++++++||+|.... ..........+.+.+|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 899999999986633 1222222222 2468999999999776 33334455689999999999999987
Q ss_pred HHh
Q 048213 249 KMA 251 (532)
Q Consensus 249 ~~~ 251 (532)
++.
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 754
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=1.9e-08 Score=114.65 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=132.8
Q ss_pred ccccccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEE--ecc-------------
Q 048213 101 SNKDYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIF--VEE------------- 165 (532)
Q Consensus 101 ~~~~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~--~~~------------- 165 (532)
||.....++-|+...+.+-. ....+++.|+|++|.||||++....+... +..+. +..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~~-----~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGKN-----NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhCC-----CeEEEecCcccCCHHHHHHHHHH
Confidence 44445677788766665543 34578999999999999999999875321 22220 000
Q ss_pred -----------------------CchhhHHHHHHHHhc-cCcEEEEEcCCCCccc--cc-ccccccCCCCCCeEEEEeec
Q 048213 166 -----------------------SESGRARSLCNRLKK-EKMILVILDNIWENLD--FH-AVGIPHGDDHKGCKVLLTAR 218 (532)
Q Consensus 166 -----------------------~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~--~~-~l~~~~~~~~~gs~ilvTtr 218 (532)
........+...+.. +.+++||+||+...+. .. .+..-+.....+.++|+|||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 000112223333332 5789999999976531 12 22222222345678889999
Q ss_pred ChHHhh--hcCCCCceEEcc----CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHccCChHH
Q 048213 219 SLDVLS--RKMDSQQDFWVG----VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVARALRNKRLFD 292 (532)
Q Consensus 219 ~~~v~~--~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~ 292 (532)
...... ..........+. +|+.+|+.++|....+... ..+.+..|.+.|+|.|+++..++..+...+..
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~- 235 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNSS- 235 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-
Confidence 843211 001112244555 9999999999987665322 25567899999999999999998776543210
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHh-hcCCCCCchHHHHHHHHhhhhcCC
Q 048213 293 WKDALEQLRWPSSTNFKDIQPTAYKAIEL-SYVKLDGDELKNIFLLIGYTAIAS 345 (532)
Q Consensus 293 w~~~l~~~~~~~~~~~~~~~~~~~~~l~~-sy~~L~~~~~k~~f~~lalF~~i~ 345 (532)
.......+. ......+...+.- -+..||++ .++.+...|++..++
T Consensus 236 ~~~~~~~~~-------~~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~~~ 281 (903)
T PRK04841 236 LHDSARRLA-------GINASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRSMN 281 (903)
T ss_pred hhhhhHhhc-------CCCchhHHHHHHHHHHhcCCHH-HHHHHHHhcccccCC
Confidence 001111111 0012234444333 37899998 999999999984333
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.96 E-value=4.9e-10 Score=112.37 Aligned_cols=137 Identities=24% Similarity=0.187 Sum_probs=63.4
Q ss_pred hhhhcccccCC-chhhhccccccEEEeccccccCcccc-cccccccEEeecccccccc------ccCC------------
Q 048213 374 IDLTYMNLLSL-PSSLGLLTNLQTLCLYYCKLQDTSVL-GELKILEILRLRVNELTRA------GSSQ------------ 433 (532)
Q Consensus 374 l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~~~~i-~~l~~L~~L~l~~~~l~~~------~l~~------------ 433 (532)
+++++|.+..+ +..|.+++||+.+++..|.+..+|.+ ....+|+.|+|.+|.|.++ .++.
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence 45555555444 23355555555555555555553322 2223355555555554444 2344
Q ss_pred ------------cceEEeccccccCCCCCcccccCCCCCEEecCCccccccccccccccccc-CCCccEEEeccCCCCCc
Q 048213 434 ------------LKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCG-IQNLKRLILFNCWNLTC 500 (532)
Q Consensus 434 ------------Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~-L~~L~~L~L~~c~~l~~ 500 (532)
+++|+|++|++ ..-....|..+.+|.+|.|+.|.|+.+|.-+ |+ |++|+.|+|.. +.++.
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~I-t~l~~~~F~~lnsL~tlkLsrNrittLp~r~-----Fk~L~~L~~LdLnr-N~iri 235 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNRI-TTLETGHFDSLNSLLTLKLSRNRITTLPQRS-----FKRLPKLESLDLNR-NRIRI 235 (873)
T ss_pred cccCCCCCCCCCceEEeeccccc-cccccccccccchheeeecccCcccccCHHH-----hhhcchhhhhhccc-cceee
Confidence 55555555544 3333344444445555555555555555444 33 55555555543 33333
Q ss_pred cchhhhhhcCCCccEEEe
Q 048213 501 LFTSSIISSFVGLQCLEI 518 (532)
Q Consensus 501 l~p~~~~~~L~~L~~L~l 518 (532)
.....| .+|++|+.|.+
T Consensus 236 ve~ltF-qgL~Sl~nlkl 252 (873)
T KOG4194|consen 236 VEGLTF-QGLPSLQNLKL 252 (873)
T ss_pred ehhhhh-cCchhhhhhhh
Confidence 322233 44455544443
No 20
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.96 E-value=6.3e-08 Score=99.41 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=114.8
Q ss_pred ccccccchHHHHH---HHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCch---hhHHHHHHHH
Q 048213 105 YEAFESRMSTFND---ILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESES---GRARSLCNRL 178 (532)
Q Consensus 105 ~~~~~gR~~~~~~---i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~---~~~~~l~~~l 178 (532)
...|+|++..+.. +.+++..+....+.++|++|+||||+|+.+++..... |...-....... ..........
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~~~l~a~~~~~~~ir~ii~~~~~~~ 88 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--FEALSAVTSGVKDLREVIEEARQRR 88 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEEEecccccHHHHHHHHHHHHHhh
Confidence 4568898887665 7777777777889999999999999999999875432 322211111111 1222222222
Q ss_pred hccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEE--eecChHHh--hhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 179 KKEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLL--TARSLDVL--SRKMDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 179 ~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv--Ttr~~~v~--~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
..+++.+|++|+++.. .+.+.+...+ ..|..+++ ||.+.... .........+.+.+++.++..+++.+.+.
T Consensus 89 ~~g~~~vL~IDEi~~l~~~~q~~LL~~l---e~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 89 SAGRRTILFIDEIHRFNKAQQDALLPHV---EDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred hcCCceEEEEechhhhCHHHHHHHHHHh---hcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHH
Confidence 3357889999999865 3344443332 22444444 34443211 11223336889999999999999988654
Q ss_pred CC-CCC-cchHHHHHHHHHHcCCchHHHHHHHHHHc---cC-ChHHHHHHHHH
Q 048213 253 DY-IEG-SEFKWVAKDVAKKCAGLPVSIVTVARALR---NK-RLFDWKDALEQ 299 (532)
Q Consensus 253 ~~-~~~-~~~~~~~~~i~~~c~glPLai~~~~~~l~---~~-~~~~w~~~l~~ 299 (532)
.. ... .-.++....|++.|+|.|..+..+..... .. +.+.-..++..
T Consensus 166 ~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~ 218 (413)
T PRK13342 166 DKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQK 218 (413)
T ss_pred HhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhh
Confidence 21 111 23356788899999999876655444332 11 45554554443
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.95 E-value=4.8e-11 Score=125.52 Aligned_cols=147 Identities=25% Similarity=0.208 Sum_probs=89.4
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccC-ccc-c-------------------------cccccccEEeeccc
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSV-L-------------------------GELKILEILRLRVN 424 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~-i-------------------------~~l~~L~~L~l~~~ 424 (532)
+.+....|.+..+|+....++.|++|++..|.+.. |.. + ..++.|+.|.+.+|
T Consensus 290 ~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 290 VSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred HHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence 45555555555566655556666666666665544 110 0 01122333333333
Q ss_pred ccccc------ccCCcceEEeccccccCCCCCc-ccccCCCCCEEecCCcccccccccc------------------ccc
Q 048213 425 ELTRA------GSSQLKHLSVRGLRASAPNPTE-SEVALPKLETVCLSSINIERIWQNQ------------------VAA 479 (532)
Q Consensus 425 ~l~~~------~l~~Lr~L~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~lp~~~------------------~~~ 479 (532)
+++.- ++++||.|+|++|+. ..+|. .+.+|+.|+.|+||||.++.+|+.+ +|
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP- 446 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP- 446 (1081)
T ss_pred cccccchhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-
Confidence 33322 678899999999976 44444 5578889999999999988888754 22
Q ss_pred ccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCc
Q 048213 480 MSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPV 523 (532)
Q Consensus 480 ~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~ 523 (532)
....++.|+++|++ |++|..+ .....-.-++|++|+++|++.
T Consensus 447 e~~~l~qL~~lDlS-~N~L~~~-~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLS-CNNLSEV-TLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhcCcceEEecc-cchhhhh-hhhhhCCCcccceeeccCCcc
Confidence 22356778888887 6777665 222211226888888888764
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.94 E-value=7.2e-09 Score=100.38 Aligned_cols=219 Identities=14% Similarity=0.058 Sum_probs=129.0
Q ss_pred ccccccchHHH---HHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchh---hHHHHHHHH
Q 048213 105 YEAFESRMSTF---NDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESG---RARSLCNRL 178 (532)
Q Consensus 105 ~~~~~gR~~~~---~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~---~~~~l~~~l 178 (532)
...++|-+..+ .-|.+++..+.+..+-+||++|+||||||+.++...... |...-....+..+ ..+.-++..
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f~~~sAv~~gvkdlr~i~e~a~~~~ 100 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--FEALSAVTSGVKDLREIIEEARKNR 100 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--eEEeccccccHHHHHHHHHHHHHHH
Confidence 34455544433 223444457888999999999999999999999865544 4433211222222 233333334
Q ss_pred hccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEE--eecChHHh--hhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 179 KKEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLL--TARSLDVL--SRKMDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 179 ~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv--Ttr~~~v~--~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
..+++.+|++|.|..- .+-+.+ +|.-.+|.-|+| ||.++... ........++.+++|+.++-.+++.+.+-
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 4478999999999854 344444 344567776665 66665432 22334457999999999999999998443
Q ss_pred ------CCCCCcchHHHHHHHHHHcCCchHHH----HHHHHHHccC---ChHHHHHHHHHhcCCCCCCCCCchhHHHHHH
Q 048213 253 ------DYIEGSEFKWVAKDVAKKCAGLPVSI----VTVARALRNK---RLFDWKDALEQLRWPSSTNFKDIQPTAYKAI 319 (532)
Q Consensus 253 ------~~~~~~~~~~~~~~i~~~c~glPLai----~~~~~~l~~~---~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~l 319 (532)
+.....-.++...-++..+.|---+. .++...-+.. +.+..++.+.+-..... ...+.+.++..++
T Consensus 178 ~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~D-k~gD~hYdliSA~ 256 (436)
T COG2256 178 DEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFD-KDGDAHYDLISAL 256 (436)
T ss_pred hhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccC-CCcchHHHHHHHH
Confidence 11111123556778888888854332 2222222211 34445555544332212 2233456777778
Q ss_pred HhhcCCCCCc
Q 048213 320 ELSYVKLDGD 329 (532)
Q Consensus 320 ~~sy~~L~~~ 329 (532)
.-|...=+++
T Consensus 257 hKSvRGSD~d 266 (436)
T COG2256 257 HKSVRGSDPD 266 (436)
T ss_pred HHhhccCCcC
Confidence 7787776665
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.92 E-value=8.9e-08 Score=98.21 Aligned_cols=216 Identities=19% Similarity=0.133 Sum_probs=122.6
Q ss_pred cccccccchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEecc-------------
Q 048213 104 DYEAFESRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEE------------- 165 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~------------- 165 (532)
.+..|+||++++++|...+. ......+.|+|++|+|||++++.++++..... .+........
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 45679999999999998874 33456788999999999999999998765432 2322221100
Q ss_pred -------------CchhhHHHHHHHHhc-cCcEEEEEcCCCCcc------cccccccccCCCCCC--eEEEEeecChHHh
Q 048213 166 -------------SESGRARSLCNRLKK-EKMILVILDNIWENL------DFHAVGIPHGDDHKG--CKVLLTARSLDVL 223 (532)
Q Consensus 166 -------------~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~g--s~ilvTtr~~~v~ 223 (532)
+.......+.+.+.. ++..+||||+++... .+..+...+ ....+ ..+|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchh
Confidence 112233445555543 456899999998743 122221111 11123 3356666654432
Q ss_pred hhc------CCCCceEEccCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHH----cCCchHHHHHHHHHHc-----c
Q 048213 224 SRK------MDSQQDFWVGVLKEDEAWSLFKKMAGDY-IEGSEFKWVAKDVAKK----CAGLPVSIVTVARALR-----N 287 (532)
Q Consensus 224 ~~~------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~----c~glPLai~~~~~~l~-----~ 287 (532)
... .-....+.+.+++.++..+++...+... ....-..+..+.|++. .|..+.|+.++-.+.. +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 110 1112467899999999999998776311 0111123333444443 4667788777654321 1
Q ss_pred C---ChHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhcCCCCCchHHHHH
Q 048213 288 K---RLFDWKDALEQLRWPSSTNFKDIQPTAYKAIELSYVKLDGDELKNIF 335 (532)
Q Consensus 288 ~---~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~f 335 (532)
. +.+....+++... .....-.+..||.+ .|..+
T Consensus 267 ~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~-~k~~L 302 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH-EKLLL 302 (394)
T ss_pred CCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH-HHHHH
Confidence 1 5556655555442 11233457789987 44433
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=1.3e-09 Score=96.61 Aligned_cols=99 Identities=27% Similarity=0.317 Sum_probs=22.3
Q ss_pred cccEEEeccccccCccccc-ccccccEEeecccccccc----ccCCcceEEeccccccCCCCCccc-ccCCCCCEEecCC
Q 048213 393 NLQTLCLYYCKLQDTSVLG-ELKILEILRLRVNELTRA----GSSQLKHLSVRGLRASAPNPTESE-VALPKLETVCLSS 466 (532)
Q Consensus 393 ~L~~L~l~~~~l~~~~~i~-~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~~~~~~~-~~l~~L~~L~L~~ 466 (532)
+++.|++.+|.++.+..++ .+.+|++|++++|.++.+ .++.|+.|++++|+. ......+ ..+|+|++|+|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I--~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRI--SSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCC--CccccchHHhCCcCCEEECcC
Confidence 4455555555555444443 344555555555554444 344555555555543 2222222 2355555555555
Q ss_pred cccccccccccccccccCCCccEEEeccCC
Q 048213 467 INIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 467 ~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
|.|..+-+ +. ....+++|++|+|.+++
T Consensus 98 N~I~~l~~-l~--~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 98 NKISDLNE-LE--PLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp S---SCCC-CG--GGGG-TT--EEE-TT-G
T ss_pred CcCCChHH-hH--HHHcCCCcceeeccCCc
Confidence 55544322 10 01234555555555543
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.89 E-value=1.5e-09 Score=109.06 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=67.3
Q ss_pred ccHHHHHhhHHhhhhcccccCCchh-hhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCC
Q 048213 363 KRMEVARARVVIDLTYMNLLSLPSS-LGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQ 433 (532)
Q Consensus 363 ~~~~~~~~~~~l~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~ 433 (532)
+.+..+...+.+|++.|.++.+|.. |..-.++++|++.+|.+.. ...+.++.+|-+|.|+.|+++.+ .+++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 4455566668889999988887643 5555678888888887776 34566777777777777776666 3556
Q ss_pred cceEEeccccccCCCCCcccccCCCCCEEecCCccccccccc
Q 048213 434 LKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQN 475 (532)
Q Consensus 434 Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~ 475 (532)
|+.|+|..|++. ......|.+|++|+.|.|..|+|..+.++
T Consensus 223 L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 223 LESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred hhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCc
Confidence 666666655441 11122334444444444444444443333
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=3.5e-10 Score=113.14 Aligned_cols=144 Identities=25% Similarity=0.246 Sum_probs=91.0
Q ss_pred HHHhhHHhhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEeecccccccc-----ccCCcceEEec
Q 048213 367 VARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA-----GSSQLKHLSVR 440 (532)
Q Consensus 367 ~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~ 440 (532)
.+....+++++.|.++.+|..++.|+ |+.|-+++|++.. |..|+-+..|..|+.+.|++..+ ++.+|+.|.+.
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence 34444677777777777777777666 6777777777666 55666667777777777766665 56667777777
Q ss_pred cccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhh--hcCCCccEEEe
Q 048213 441 GLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSII--SSFVGLQCLEI 518 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~--~~L~~L~~L~l 518 (532)
.|++ ..+|..+..|+ |..||+++|++..+|-++ .+|++|++|-|.+ |-|..= |..++ |+..=.+||++
T Consensus 198 Rn~l--~~lp~El~~Lp-Li~lDfScNkis~iPv~f-----r~m~~Lq~l~Len-NPLqSP-PAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 198 RNHL--EDLPEELCSLP-LIRLDFSCNKISYLPVDF-----RKMRHLQVLQLEN-NPLQSP-PAQICEKGKVHIFKYLST 267 (722)
T ss_pred hhhh--hhCCHHHhCCc-eeeeecccCceeecchhh-----hhhhhheeeeecc-CCCCCC-hHHHHhccceeeeeeecc
Confidence 6665 55566565444 667777777777777666 6677777777764 335543 44431 22233455555
Q ss_pred ecC
Q 048213 519 CEC 521 (532)
Q Consensus 519 ~~c 521 (532)
.-|
T Consensus 268 qA~ 270 (722)
T KOG0532|consen 268 QAC 270 (722)
T ss_pred hhc
Confidence 555
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=2.5e-09 Score=94.81 Aligned_cols=115 Identities=24% Similarity=0.243 Sum_probs=40.4
Q ss_pred cccccCcccccccccccEEeecccccccc-----ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCccccccccc
Q 048213 401 YCKLQDTSVLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQN 475 (532)
Q Consensus 401 ~~~l~~~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~ 475 (532)
.+.+...+.+.+..+++.|+|.+|.|+.+ .+.+|+.|++++|.. . ....+..+++|++|++++|.|+.+++.
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~-~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--T-KLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS----S---TT----TT--EEE--SS---S-CHH
T ss_pred ccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCC--c-cccCccChhhhhhcccCCCCCCccccc
Confidence 34445555666777899999999998877 467899999999976 2 234677899999999999999998665
Q ss_pred ccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCc
Q 048213 476 QVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPV 523 (532)
Q Consensus 476 ~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~ 523 (532)
+. ..+++|+.|.|++ +.+..+......+.+++|++|+|.++|-
T Consensus 83 l~----~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 83 LD----KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp HH----HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred hH----HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 41 1479999999997 5566653333347899999999999984
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=4.2e-10 Score=104.12 Aligned_cols=151 Identities=19% Similarity=0.086 Sum_probs=117.5
Q ss_pred CChhHHHHHHHHhcccCCcc---cHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEe
Q 048213 344 ASIDDLLMYGMGLGLFQGIK---RMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILR 420 (532)
Q Consensus 344 i~~~~Li~~w~aeg~~~~~~---~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~ 420 (532)
.+...+...|..|+-...+. .+.--.....+|+++|.++.+.+++.-++.++.|++++|.+.....+..+++|+.||
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LD 335 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLD 335 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEee
Confidence 34445555666666554322 222233346689999999999999999999999999999999888899999999999
Q ss_pred ecccccccc-----ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccC
Q 048213 421 LRVNELTRA-----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNC 495 (532)
Q Consensus 421 l~~~~l~~~-----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c 495 (532)
|++|.+.++ ++.+.+.|.|.+|. .+....++.+.+|.+||+++|+|+.+..-- .+++|+.|++|.|.++
T Consensus 336 LS~N~Ls~~~Gwh~KLGNIKtL~La~N~---iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~---~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 336 LSGNLLAECVGWHLKLGNIKTLKLAQNK---IETLSGLRKLYSLVNLDLSSNQIEELDEVN---HIGNLPCLETLRLTGN 409 (490)
T ss_pred cccchhHhhhhhHhhhcCEeeeehhhhh---HhhhhhhHhhhhheeccccccchhhHHHhc---ccccccHHHHHhhcCC
Confidence 999988877 77899999999994 355667888999999999999988775421 2378999999999986
Q ss_pred CCCCcc
Q 048213 496 WNLTCL 501 (532)
Q Consensus 496 ~~l~~l 501 (532)
+ +..+
T Consensus 410 P-l~~~ 414 (490)
T KOG1259|consen 410 P-LAGS 414 (490)
T ss_pred C-cccc
Confidence 5 4444
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.81 E-value=1.4e-08 Score=109.75 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=48.7
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc--ccCC-----------------
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA--GSSQ----------------- 433 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~--~l~~----------------- 433 (532)
.++++.+.++++|..+. .+|+.|.+.+|.+..++.. +++|++|++++|+++.+ ..++
T Consensus 205 ~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~l 280 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 280 (788)
T ss_pred EEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhc
Confidence 45566666666666543 2555555555555553321 34555555555555544 1233
Q ss_pred ---cceEEeccccccCCCCCcccccCCCCCEEecCCcccccccc
Q 048213 434 ---LKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQ 474 (532)
Q Consensus 434 ---Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~ 474 (532)
|+.|++++|++ ...|. .+++|++|+|++|.++.+|.
T Consensus 281 p~~L~~L~Ls~N~L--t~LP~---~p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 281 PSGLCKLWIFGNQL--TSLPV---LPPGLQELSVSDNQLASLPA 319 (788)
T ss_pred hhhcCEEECcCCcc--ccccc---cccccceeECCCCccccCCC
Confidence 44444444433 22221 23567777777777777654
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.76 E-value=8.9e-09 Score=111.76 Aligned_cols=73 Identities=19% Similarity=0.159 Sum_probs=35.5
Q ss_pred CcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCC
Q 048213 433 QLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVG 512 (532)
Q Consensus 433 ~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~ 512 (532)
+|+.|++++|.+ ..+|..+. ++|+.|+|++|+|+.+|..+ . ++|++|+|++| .+..+ |..+ . .+
T Consensus 326 sL~~L~Ls~N~L--t~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-----p--~~L~~LdLs~N-~Lt~L-P~~l-~--~s 389 (754)
T PRK15370 326 GLKTLEAGENAL--TSLPASLP--PELQVLDVSKNQITVLPETL-----P--PTITTLDVSRN-ALTNL-PENL-P--AA 389 (754)
T ss_pred cceeccccCCcc--ccCChhhc--CcccEEECCCCCCCcCChhh-----c--CCcCEEECCCC-cCCCC-CHhH-H--HH
Confidence 455555555543 22332221 45555666665555555443 2 45666666653 35555 3333 1 24
Q ss_pred ccEEEeecC
Q 048213 513 LQCLEICEC 521 (532)
Q Consensus 513 L~~L~l~~c 521 (532)
|++|++++|
T Consensus 390 L~~LdLs~N 398 (754)
T PRK15370 390 LQIMQASRN 398 (754)
T ss_pred HHHHhhccC
Confidence 555666554
No 31
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.76 E-value=8.4e-07 Score=90.03 Aligned_cols=173 Identities=17% Similarity=0.141 Sum_probs=99.7
Q ss_pred ccccccchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHhhcc-CC----CCEEEEecc---C------
Q 048213 105 YEAFESRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENE-KL----FDRVIFVEE---S------ 166 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~----F~~~~~~~~---~------ 166 (532)
+..|+||++++++|...+. ......+.|+|++|+|||++++.+++..... .. |........ +
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 4579999999999999886 2445689999999999999999999865321 00 222221100 0
Q ss_pred -------------------chhhHHHHHHHHh-ccCcEEEEEcCCCCcc-ccccccccc-----CCCC--CCeEEEEeec
Q 048213 167 -------------------ESGRARSLCNRLK-KEKMILVILDNIWENL-DFHAVGIPH-----GDDH--KGCKVLLTAR 218 (532)
Q Consensus 167 -------------------~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~~~~l~~~~-----~~~~--~gs~ilvTtr 218 (532)
..+....+.+.+. .+++++||||+++... ..+.+...+ .... ....+|.++.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 0112233444443 2467899999998762 111111111 1111 2334555554
Q ss_pred ChHHhh----hcC-C-CCceEEccCCCHHHHHHHHHHHhC---C-CCCCcchHHHHHHHHHHcCCchHH
Q 048213 219 SLDVLS----RKM-D-SQQDFWVGVLKEDEAWSLFKKMAG---D-YIEGSEFKWVAKDVAKKCAGLPVS 277 (532)
Q Consensus 219 ~~~v~~----~~~-~-~~~~~~l~~L~~~~~~~Lf~~~~~---~-~~~~~~~~~~~~~i~~~c~glPLa 277 (532)
...... ... . ....+.+.+.+.++..+++...+. . ....++..+.+.+++....|.|-.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 443211 001 1 124688999999999999988763 1 112222334455666777787743
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.75 E-value=1.6e-09 Score=104.08 Aligned_cols=85 Identities=16% Similarity=0.272 Sum_probs=42.8
Q ss_pred cCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcC
Q 048213 431 SSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSF 510 (532)
Q Consensus 431 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L 510 (532)
+++||.|+|++|.+ .......|..+.+|++|.|..|.|..+-...+ .+|..|++|+|.+ +.++.+.|..| ..+
T Consensus 273 L~~L~~lnlsnN~i-~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f----~~ls~L~tL~L~~-N~it~~~~~aF-~~~ 345 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKI-TRIEDGAFEGAAELQELYLTRNKLEFVSSGMF----QGLSGLKTLSLYD-NQITTVAPGAF-QTL 345 (498)
T ss_pred cccceEeccCCCcc-chhhhhhhcchhhhhhhhcCcchHHHHHHHhh----hccccceeeeecC-CeeEEEecccc-ccc
Confidence 44444455544444 23333344444444445454444444433331 2456666666666 44666645444 566
Q ss_pred CCccEEEeecCC
Q 048213 511 VGLQCLEICECP 522 (532)
Q Consensus 511 ~~L~~L~l~~c~ 522 (532)
.+|..|++-.+|
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 666666655433
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.71 E-value=2e-09 Score=113.66 Aligned_cols=121 Identities=26% Similarity=0.206 Sum_probs=98.3
Q ss_pred HHhhHHhhhhcccccC-CchhhhccccccEEEeccccccC-c-ccccccccccEEeecccccccc-----ccCCcceEEe
Q 048213 368 ARARVVIDLTYMNLLS-LPSSLGLLTNLQTLCLYYCKLQD-T-SVLGELKILEILRLRVNELTRA-----GSSQLKHLSV 439 (532)
Q Consensus 368 ~~~~~~l~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l 439 (532)
..-...+.+.+|.++. .-+.+.+.++|+.|++++|++.. | ..+.++..|+.|+|+||.++.+ .++.|+.|..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 3444678888998866 44458889999999999999987 3 4688999999999999999988 7889999999
Q ss_pred ccccccCCCCCcccccCCCCCEEecCCcccccc--cccccccccccCCCccEEEeccCCC
Q 048213 440 RGLRASAPNPTESEVALPKLETVCLSSINIERI--WQNQVAAMSCGIQNLKRLILFNCWN 497 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l--p~~~~~~~~~~L~~L~~L~L~~c~~ 497 (532)
.+|+. ...| .+..++.|+.+|++.|+++.+ |... .-++|++|||+|+..
T Consensus 438 hsN~l--~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~------p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQL--LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL------PSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCCce--eech-hhhhcCcceEEecccchhhhhhhhhhC------CCcccceeeccCCcc
Confidence 99976 4455 788999999999999988743 3332 127999999998664
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.71 E-value=2.3e-08 Score=108.14 Aligned_cols=129 Identities=23% Similarity=0.163 Sum_probs=78.9
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc--ccCCcceEEeccccccCCCCC
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA--GSSQLKHLSVRGLRASAPNPT 450 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~--~l~~Lr~L~l~~~~~~~~~~~ 450 (532)
.+.+.+|.+..+|.. ..+|++|++++|++..++.+ ..+|..|++++|.+..+ ...+|+.|++++|.+ ...|
T Consensus 326 ~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~L--t~LP 398 (788)
T PRK15387 326 KLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL--TSLP 398 (788)
T ss_pred ccccccCcccccccc---ccccceEecCCCccCCCCCC--CcccceehhhccccccCcccccccceEEecCCcc--cCCC
Confidence 344455555555531 13566677776666663322 23556666666666655 234677777777765 2333
Q ss_pred cccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 451 ESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
.. .++|+.|++++|.++.+|... .+|+.|++++ +.++.+ |..+ +++++|+.|+|++++
T Consensus 399 ~l---~s~L~~LdLS~N~LssIP~l~--------~~L~~L~Ls~-NqLt~L-P~sl-~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 399 VL---PSELKELMVSGNRLTSLPMLP--------SGLLSLSVYR-NQLTRL-PESL-IHLSSETTVNLEGNP 456 (788)
T ss_pred Cc---ccCCCEEEccCCcCCCCCcch--------hhhhhhhhcc-Cccccc-ChHH-hhccCCCeEECCCCC
Confidence 22 246777777777777776532 4567778876 457777 6666 678888888888776
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=98.69 E-value=2.2e-07 Score=87.44 Aligned_cols=153 Identities=14% Similarity=0.049 Sum_probs=91.2
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhccCcEEEEEcCCCCc---ccccc-cc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKKEKMILVILDNIWEN---LDFHA-VG 201 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~-l~ 201 (532)
..+.+.|+|++|+|||+||+++++....+. .................+.+.+. +.-+|++||+|.. ..|+. +.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~~~~l~ 114 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ-RTAIYIPLSKSQYFSPAVLENLE--QQDLVCLDDLQAVIGNEEWELAIF 114 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CCeEEeeHHHhhhhhHHHHhhcc--cCCEEEEeChhhhcCChHHHHHHH
Confidence 346789999999999999999999864432 22222222111112223333333 2358999999974 34542 22
Q ss_pred cccCCC-CCCeEEEEe-ecC---------hHHhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH
Q 048213 202 IPHGDD-HKGCKVLLT-ARS---------LDVLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKK 270 (532)
Q Consensus 202 ~~~~~~-~~gs~ilvT-tr~---------~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~ 270 (532)
..+... ..|..+|++ ++. +.+.. .+....++.+++++.++.++++.+.+.... ..--+++..-|++.
T Consensus 115 ~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~ 192 (229)
T PRK06893 115 DLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-IELSDEVANFLLKR 192 (229)
T ss_pred HHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHh
Confidence 212111 235556554 443 23322 234456889999999999999999886322 22236677888888
Q ss_pred cCCchHHHHHHHH
Q 048213 271 CAGLPVSIVTVAR 283 (532)
Q Consensus 271 c~glPLai~~~~~ 283 (532)
+.|-.-++..+-.
T Consensus 193 ~~~d~r~l~~~l~ 205 (229)
T PRK06893 193 LDRDMHTLFDALD 205 (229)
T ss_pred ccCCHHHHHHHHH
Confidence 8876655544433
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.67 E-value=5e-08 Score=106.02 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=28.7
Q ss_pred CCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCccccc
Q 048213 458 KLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPVLKEI 527 (532)
Q Consensus 458 ~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L~~i 527 (532)
+|++|+|++|+++.+|..+ . .+|+.|++++ +.+..+ |..+ .++|++|++++|. |+.+
T Consensus 284 sL~~L~Ls~N~Lt~LP~~l-----p--~sL~~L~Ls~-N~Lt~L-P~~l---~~sL~~L~Ls~N~-Lt~L 340 (754)
T PRK15370 284 ELRYLSVYDNSIRTLPAHL-----P--SGITHLNVQS-NSLTAL-PETL---PPGLKTLEAGENA-LTSL 340 (754)
T ss_pred CCcEEECCCCccccCcccc-----h--hhHHHHHhcC-CccccC-Cccc---cccceeccccCCc-cccC
Confidence 4555555555555444432 1 3455555554 234445 3322 2577788877764 4433
No 37
>PRK04195 replication factor C large subunit; Provisional
Probab=98.64 E-value=2.2e-06 Score=89.89 Aligned_cols=242 Identities=13% Similarity=0.055 Sum_probs=134.3
Q ss_pred ccccccchHHHHHHHHHhcC----CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCc--hhhHHHHHHHH
Q 048213 105 YEAFESRMSTFNDILNALKS----PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESE--SGRARSLCNRL 178 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~--~~~~~~l~~~l 178 (532)
...++|.++.++.+.+|+.. ...+.+.|+|++|+||||+|..+++... |+...+...+. ...+..+....
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~ielnasd~r~~~~i~~~i~~~ 88 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEVIELNASDQRTADVIERVAGEA 88 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCEEEEcccccccHHHHHHHHHHh
Confidence 56789999999999998862 2268899999999999999999999763 33332222111 11122221111
Q ss_pred hc------cCcEEEEEcCCCCccc------ccccccccCCCCCCeEEEEeecChHHh-h-hcCCCCceEEccCCCHHHHH
Q 048213 179 KK------EKMILVILDNIWENLD------FHAVGIPHGDDHKGCKVLLTARSLDVL-S-RKMDSQQDFWVGVLKEDEAW 244 (532)
Q Consensus 179 ~~------~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~ilvTtr~~~v~-~-~~~~~~~~~~l~~L~~~~~~ 244 (532)
.. .++-+||+|+++.... +..+...+. ..+..||+|+.+..-. . ........+.+.+++.++..
T Consensus 89 ~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~ 166 (482)
T PRK04195 89 ATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIV 166 (482)
T ss_pred hccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHH
Confidence 11 2577999999986532 333332222 2234466666443211 1 11223457899999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHc-cC---ChHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 048213 245 SLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVARALR-NK---RLFDWKDALEQLRWPSSTNFKDIQPTAYKAIE 320 (532)
Q Consensus 245 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~-~~---~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~l~ 320 (532)
..+.+.+..... .-..+....|++.++|-.-.+......+. +. +.+....+... +....++.++.
T Consensus 167 ~~L~~i~~~egi-~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~----------d~~~~if~~l~ 235 (482)
T PRK04195 167 PVLKRICRKEGI-ECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRR----------DREESIFDALD 235 (482)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcC----------CCCCCHHHHHH
Confidence 888877642111 12256788999999997655544333333 22 33333322211 11234444444
Q ss_pred hhcCCCCCchHHHHHHHHhhh-hcCChhHHHHHHHHhcccCCcccHHHHH
Q 048213 321 LSYVKLDGDELKNIFLLIGYT-AIASIDDLLMYGMGLGLFQGIKRMEVAR 369 (532)
Q Consensus 321 ~sy~~L~~~~~k~~f~~lalF-~~i~~~~Li~~w~aeg~~~~~~~~~~~~ 369 (532)
.-+.. .+ .+..+. +++ ..++.+ .+-.|+.+++......++++.
T Consensus 236 ~i~~~--k~-~~~a~~--~~~~~~~~~~-~i~~~l~en~~~~~~~~~~~~ 279 (482)
T PRK04195 236 AVFKA--RN-ADQALE--ASYDVDEDPD-DLIEWIDENIPKEYDDPEDIA 279 (482)
T ss_pred HHHCC--CC-HHHHHH--HHHcccCCHH-HHHHHHHhccccccCCHHHHH
Confidence 33321 11 121111 222 445554 456799999876544444443
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.59 E-value=6.1e-07 Score=84.45 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=101.1
Q ss_pred chHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhccCcEEEEEcC
Q 048213 111 RMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKKEKMILVILDN 190 (532)
Q Consensus 111 R~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDd 190 (532)
....++.+.+++.......+.|+|+.|+|||+||+.+++...... .................+.+.+. +.-+||+||
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~--~~~lLvIDd 98 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERG-KSAIYLPLAELAQADPEVLEGLE--QADLVCLDD 98 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CcEEEEeHHHHHHhHHHHHhhcc--cCCEEEEeC
Confidence 455677777776556668899999999999999999998754321 12222221111111122333333 234899999
Q ss_pred CCCcc---ccc-ccccccCC-CCCCeEEEEeecChHHh--------hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCC
Q 048213 191 IWENL---DFH-AVGIPHGD-DHKGCKVLLTARSLDVL--------SRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEG 257 (532)
Q Consensus 191 v~~~~---~~~-~l~~~~~~-~~~gs~ilvTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (532)
++... .|. .+...+.. ...+.++|+||+..... .........+.+.+++.++...++...+.... .
T Consensus 99 i~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~ 177 (226)
T TIGR03420 99 VEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-L 177 (226)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-C
Confidence 98653 222 23222211 12334788888753211 11122245789999999999999887543111 1
Q ss_pred cchHHHHHHHHHHcCCchHHHHHHHHH
Q 048213 258 SEFKWVAKDVAKKCAGLPVSIVTVARA 284 (532)
Q Consensus 258 ~~~~~~~~~i~~~c~glPLai~~~~~~ 284 (532)
.--++..+.+++.+.|.|..+..+-..
T Consensus 178 ~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 178 QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 223566788888899988777666443
No 39
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=3.8e-06 Score=89.18 Aligned_cols=176 Identities=13% Similarity=0.129 Sum_probs=112.3
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc-------------------CCCCEEE-Ee
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE-------------------KLFDRVI-FV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~-~~ 163 (532)
-..++|.+..++.|.+++..+.+ ..+.++|..|+||||+|+.+.+...-. +.|...+ ++
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 46789999999999999886654 456799999999999999888764321 1122222 22
Q ss_pred ccCc--hhhHHHHHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecChHHh-hhcCCCCceEE
Q 048213 164 EESE--SGRARSLCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSLDVL-SRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~~--~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~~~~~~~~~ 234 (532)
..+. .+.+..+.+... .++.-++|||+++... .++.+...+-.-....++|++|++..-. .........+.
T Consensus 95 Aas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~ 174 (830)
T PRK07003 95 AASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFN 174 (830)
T ss_pred ccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEe
Confidence 1111 112222333322 2455689999998764 3666655554434567777777765432 22223345899
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch-HHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP-VSIVTV 281 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 281 (532)
+..++.++..+.+.+.+.... ..-..+....|++.++|.. -|+..+
T Consensus 175 Fk~Ls~eeIv~~L~~Il~~Eg-I~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 175 LKQMPAGHIVSHLERILGEER-IAFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred cCCcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999988765221 1223566788999998854 455443
No 40
>PF13173 AAA_14: AAA domain
Probab=98.58 E-value=1.5e-07 Score=79.94 Aligned_cols=115 Identities=18% Similarity=0.114 Sum_probs=74.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchh-----hHHHHHHHHhccCcEEEEEcCCCCcccccccc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESG-----RARSLCNRLKKEKMILVILDNIWENLDFHAVG 201 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~-----~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~ 201 (532)
-+++.|.|+.|+||||++++++.+......+-..-++...... ..+.+.+... .+..+++||++....+|....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iDEiq~~~~~~~~l 80 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIK-PGKKYIFIDEIQYLPDWEDAL 80 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhc-cCCcEEEEehhhhhccHHHHH
Confidence 3789999999999999999999876511111111011111111 1223333322 367899999999998888876
Q ss_pred cccCCCCCCeEEEEeecChHHhhh-----cCCCCceEEccCCCHHH
Q 048213 202 IPHGDDHKGCKVLLTARSLDVLSR-----KMDSQQDFWVGVLKEDE 242 (532)
Q Consensus 202 ~~~~~~~~gs~ilvTtr~~~v~~~-----~~~~~~~~~l~~L~~~~ 242 (532)
..+.+..+..+|++|+.+...... ..+....+.+.||+-.|
T Consensus 81 k~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 81 KFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 666666667899999998776522 12223467899998765
No 41
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.5e-06 Score=86.07 Aligned_cols=169 Identities=18% Similarity=0.177 Sum_probs=110.6
Q ss_pred cccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhh----ccCCCCEEEEec-cCch---hhHHHHHH
Q 048213 106 EAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAE----NEKLFDRVIFVE-ESES---GRARSLCN 176 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~----~~~~F~~~~~~~-~~~~---~~~~~l~~ 176 (532)
..++|-+..++.+.+++..+.. ....++|+.|+||||+|..+++..- ...|.|...+.. .... +.+..+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~ 83 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIE 83 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHH
Confidence 3567888889999999886654 5668999999999999999998532 234556544333 2221 22333333
Q ss_pred HHh----ccCcEEEEEcCCC--CcccccccccccCCCCCCeEEEEeecChHHh-hhcCCCCceEEccCCCHHHHHHHHHH
Q 048213 177 RLK----KEKMILVILDNIW--ENLDFHAVGIPHGDDHKGCKVLLTARSLDVL-SRKMDSQQDFWVGVLKEDEAWSLFKK 249 (532)
Q Consensus 177 ~l~----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~ 249 (532)
.+. .+++-++|+|+++ +.+.++.+...+..-..++.+|++|.+.... .........+.+.++++++....+.+
T Consensus 84 ~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 84 EVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred HHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHH
Confidence 332 2344566667654 4456777766666556788888888765432 22223346889999999999888866
Q ss_pred HhCCCCCCcchHHHHHHHHHHcCCchHHHH
Q 048213 250 MAGDYIEGSEFKWVAKDVAKKCAGLPVSIV 279 (532)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 279 (532)
..... ..+.++.++..++|.|.-+.
T Consensus 164 ~~~~~-----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 164 KYNDI-----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HhcCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 54211 13447788999999886554
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.56 E-value=3.3e-08 Score=98.22 Aligned_cols=148 Identities=21% Similarity=0.142 Sum_probs=81.6
Q ss_pred hHHhhhhcccccC-----Cchhhhcc-ccccEEEeccccccC------cccccccccccEEeecccccccc---------
Q 048213 371 RVVIDLTYMNLLS-----LPSSLGLL-TNLQTLCLYYCKLQD------TSVLGELKILEILRLRVNELTRA--------- 429 (532)
Q Consensus 371 ~~~l~l~~~~l~~-----lp~~~~~l-~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~l~~~--------- 429 (532)
.+.+++.++.+.. +...+..+ ++|+.|++.+|.+.. ...+..+++|++|++++|.+...
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 4455666665542 23344555 677777777777663 22345556777777777766632
Q ss_pred -ccCCcceEEeccccccCCC----CCcccccCCCCCEEecCCcccccccc-cccccccccCCCccEEEeccCCCCC----
Q 048213 430 -GSSQLKHLSVRGLRASAPN----PTESEVALPKLETVCLSSINIERIWQ-NQVAAMSCGIQNLKRLILFNCWNLT---- 499 (532)
Q Consensus 430 -~l~~Lr~L~l~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~~~~~~L~~L~~L~L~~c~~l~---- 499 (532)
.+++|++|++++|.+ ... ....+..+++|++|++++|.++.... .+........+.|+.|++++|. ++
T Consensus 190 ~~~~~L~~L~L~~n~i-~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~ 267 (319)
T cd00116 190 KANCNLEVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGA 267 (319)
T ss_pred HhCCCCCEEeccCCcc-ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHH
Confidence 334777777777754 111 12234556777777777776553111 1100000013677777777764 32
Q ss_pred -ccchhhhhhcCCCccEEEeecCC
Q 048213 500 -CLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 500 -~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
.+ ...+ ..+++|++|++++|.
T Consensus 268 ~~l-~~~~-~~~~~L~~l~l~~N~ 289 (319)
T cd00116 268 KDL-AEVL-AEKESLLELDLRGNK 289 (319)
T ss_pred HHH-HHHH-hcCCCccEEECCCCC
Confidence 22 2222 455677777777764
No 43
>PLN03025 replication factor C subunit; Provisional
Probab=98.54 E-value=8.2e-07 Score=88.07 Aligned_cols=171 Identities=11% Similarity=0.048 Sum_probs=103.0
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe-ccCchhhHHHHHHHH----h
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV-EESESGRARSLCNRL----K 179 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~-~~~~~~~~~~l~~~l----~ 179 (532)
...++|.++.++.|.+++..++.+-+.++|++|+||||+|..+++...-. .|...+.. ..+.....+.+++.+ .
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~vr~~i~~~~~ 90 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDVVRNKIKMFAQ 90 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHHHHHHHHHHHh
Confidence 45688998888888888777777778899999999999999999875321 12212111 111111112222221 1
Q ss_pred ------ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEEccCCCHHHHHHHHHHH
Q 048213 180 ------KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFWVGVLKEDEAWSLFKKM 250 (532)
Q Consensus 180 ------~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 250 (532)
.++.-++++|+++... ..+.+...+..-...+++++++.... +..........+++.+++.++....+...
T Consensus 91 ~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i 170 (319)
T PLN03025 91 KKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKV 170 (319)
T ss_pred ccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHH
Confidence 1345699999998652 22333322222234566776665432 21111122357899999999999888887
Q ss_pred hCCCCCCcchHHHHHHHHHHcCCchHH
Q 048213 251 AGDYIEGSEFKWVAKDVAKKCAGLPVS 277 (532)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~c~glPLa 277 (532)
+..... .-.++....|+..++|-.-.
T Consensus 171 ~~~egi-~i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 171 VEAEKV-PYVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred HHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 642111 11256678899999886533
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=1e-07 Score=69.25 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=46.2
Q ss_pred CCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 457 PKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 457 ~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
|+|++|++++|+++.+|+..+ ..+++|++|++++ +.+..++|..| .++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f----~~l~~L~~L~l~~-N~l~~i~~~~f-~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF----SNLPNLETLDLSN-NNLTSIPPDAF-SNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTT----TTGTTESEEEETS-SSESEEETTTT-TTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHH----cCCCCCCEeEccC-CccCccCHHHH-cCCCCCCEEeCcCCc
Confidence 568888888888888887662 3578888888885 55788856565 788888888888875
No 45
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.53 E-value=2.1e-06 Score=86.81 Aligned_cols=169 Identities=18% Similarity=0.179 Sum_probs=100.6
Q ss_pred ccccccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEec---c-
Q 048213 103 KDYEAFESRMSTFNDILNALK----S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVE---E- 165 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~---~- 165 (532)
.....+.|+++.+++|.+.+. . ...+-+.++|++|+|||++|+++++..... |-...... .
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~~~v~~~~l~~~~ 196 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FIRVVGSELVRKY 196 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--EEecchHHHHHHh
Confidence 345568899999999988764 1 234669999999999999999999876533 32221000 0
Q ss_pred --CchhhHHHHHHHHhccCcEEEEEcCCCCcc----------------cccccccccC--CCCCCeEEEEeecChHHhh-
Q 048213 166 --SESGRARSLCNRLKKEKMILVILDNIWENL----------------DFHAVGIPHG--DDHKGCKVLLTARSLDVLS- 224 (532)
Q Consensus 166 --~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~gs~ilvTtr~~~v~~- 224 (532)
........+.+........+|++|+++... .+..+...+. ....+.+||.||.......
T Consensus 197 ~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~ 276 (364)
T TIGR01242 197 IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDP 276 (364)
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCCh
Confidence 011112233333333456899999997531 0111111111 1134677888887654321
Q ss_pred hcC---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 225 RKM---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 225 ~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
... .....+.+...+.++..++|..++.......+. ....+++.+.|..
T Consensus 277 al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 277 ALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred hhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 111 223578899999999999999887643322211 1456777777754
No 46
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.53 E-value=2.7e-06 Score=85.35 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=104.5
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCE--EEEeccC------------c---
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDR--VIFVEES------------E--- 167 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~~~~~~------------~--- 167 (532)
...++|++..++.+.+++..+..+.+.++|+.|+||||+|+.+++..... .+.. ......+ .
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcchh
Confidence 45688999999999998887776778999999999999999998865322 1111 1100000 0
Q ss_pred ----------hhhHHHHHH---HHh-----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecChHHh-hhc
Q 048213 168 ----------SGRARSLCN---RLK-----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSLDVL-SRK 226 (532)
Q Consensus 168 ----------~~~~~~l~~---~l~-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~ 226 (532)
......+.+ ... .+.+-+||+||+.... ..+.+...+......+++|+|+...... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 001112222 111 1234589999997552 2233333222223456777777543321 212
Q ss_pred CCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHH
Q 048213 227 MDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVT 280 (532)
Q Consensus 227 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 280 (532)
......+.+.+++.++....+.+.+.... ..-..+....+++.++|.+-.+..
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~-~~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEG-VDYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 22335788899999999988888654211 112366788899999887655443
No 47
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.52 E-value=1.8e-06 Score=95.68 Aligned_cols=239 Identities=13% Similarity=0.113 Sum_probs=148.2
Q ss_pred ccccchHHHHHHHHHhc---CCCceEEEEEccCCCchHHHHHHHHHHhhcc------CCCCEEE----------------
Q 048213 107 AFESRMSTFNDILNALK---SPDVNMLGIYGMGGIRKTTPAKEVAIKAENE------KLFDRVI---------------- 161 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------~~F~~~~---------------- 161 (532)
.++||+.+++.|...+. .+...++.+.|..|||||+|+++|......+ ..|+..-
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 36899999999998887 5566799999999999999999998865433 2233111
Q ss_pred ---------------------------------------Ee---------ccCchh-----hHHHHHHHHhccCcEEEEE
Q 048213 162 ---------------------------------------FV---------EESESG-----RARSLCNRLKKEKMILVIL 188 (532)
Q Consensus 162 ---------------------------------------~~---------~~~~~~-----~~~~l~~~l~~~k~~LlVl 188 (532)
.. ...... ....+.......++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 00 000000 1122333334467999999
Q ss_pred cCCCCcc-----cccccccccC---CCCCCeEEEEeecCh-HHhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcc
Q 048213 189 DNIWENL-----DFHAVGIPHG---DDHKGCKVLLTARSL-DVLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSE 259 (532)
Q Consensus 189 Ddv~~~~-----~~~~l~~~~~---~~~~gs~ilvTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 259 (532)
||+.-.+ -++.+..... ...+..-.+.|.+.. ........+...+.|.||+..+...+.....+... ..
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--~~ 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--LL 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--cc
Confidence 9985221 1111111110 000111123333332 12223344557899999999999999988776422 22
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHccC-------ChHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhcCCCCCchHH
Q 048213 260 FKWVAKDVAKKCAGLPVSIVTVARALRNK-------RLFDWKDALEQLRWPSSTNFKDIQPTAYKAIELSYVKLDGDELK 332 (532)
Q Consensus 260 ~~~~~~~i~~~c~glPLai~~~~~~l~~~-------~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 332 (532)
..+....|+++..|+|+-+..+-..+... +...|..-..... ..+..+++...+..-.+.||.. .+
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~------~~~~~~~vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG------ILATTDAVVEFLAARLQKLPGT-TR 311 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC------CchhhHHHHHHHHHHHhcCCHH-HH
Confidence 35678899999999999998888877632 3334433322222 1112333555688889999998 89
Q ss_pred HHHHHHhhh-hcCChhHHHHHHH
Q 048213 333 NIFLLIGYT-AIASIDDLLMYGM 354 (532)
Q Consensus 333 ~~f~~lalF-~~i~~~~Li~~w~ 354 (532)
+.....|++ ..|+.+.|-..+.
T Consensus 312 ~Vl~~AA~iG~~F~l~~La~l~~ 334 (849)
T COG3899 312 EVLKAAACIGNRFDLDTLAALAE 334 (849)
T ss_pred HHHHHHHHhCccCCHHHHHHHHh
Confidence 999999999 6677666655543
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=6.2e-06 Score=83.18 Aligned_cols=173 Identities=14% Similarity=0.182 Sum_probs=108.4
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccC--------------------CCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEK--------------------LFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~~~ 163 (532)
-..++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+++...-.. +.+....+
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 45688999999999998886654 5678999999999999999988653211 11111111
Q ss_pred cc--CchhhHHHHHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEE
Q 048213 164 EE--SESGRARSLCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~ 234 (532)
.. ...+....+.+.+. .+++-++|+|++.... .++.+...+.......++|++|.+.. +..........++
T Consensus 95 ~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~ 174 (363)
T PRK14961 95 AASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFK 174 (363)
T ss_pred ccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEe
Confidence 11 11122333433332 2355699999998664 35555444443345666676665433 3222223346899
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
+.+++.++..+.+...+.... ..-.++.+..|+..++|.|-.+
T Consensus 175 ~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 175 LKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred CCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 999999999988877554211 1122566788999999987543
No 49
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.50 E-value=1.4e-05 Score=86.72 Aligned_cols=167 Identities=19% Similarity=0.178 Sum_probs=100.3
Q ss_pred ccccccchHHHH---HHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchh---hHHHHHHHH
Q 048213 105 YEAFESRMSTFN---DILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESG---RARSLCNRL 178 (532)
Q Consensus 105 ~~~~~gR~~~~~---~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~---~~~~l~~~l 178 (532)
...|+|.+..+. .+.+.+..+....+.++|++|+||||||+.+++..... |...-.......+ ......+.+
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~--f~~lna~~~~i~dir~~i~~a~~~l 104 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH--FSSLNAVLAGVKDLRAEVDRAKERL 104 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc--ceeehhhhhhhHHHHHHHHHHHHHh
Confidence 456889888774 45666667777788999999999999999999865432 4221100011111 112222222
Q ss_pred h-ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEE--eecChH--HhhhcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 179 K-KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLL--TARSLD--VLSRKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 179 ~-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv--Ttr~~~--v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
. .+++.+|++||++.. .+++.+...+ ..|+.+++ ||.+.. +.........++.+++++.++...++.+.+
T Consensus 105 ~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 105 ERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred hhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHH
Confidence 2 135679999999754 3444553322 33555555 344432 111122234579999999999999998865
Q ss_pred CC------CCCCcchHHHHHHHHHHcCCchH
Q 048213 252 GD------YIEGSEFKWVAKDVAKKCAGLPV 276 (532)
Q Consensus 252 ~~------~~~~~~~~~~~~~i~~~c~glPL 276 (532)
.. .....-.++....|++.+.|.--
T Consensus 182 ~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 182 QDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 31 11122235667888888888643
No 50
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1.5e-05 Score=83.15 Aligned_cols=173 Identities=15% Similarity=0.110 Sum_probs=109.4
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccCCCC-------------------EEEEec
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEKLFD-------------------RVIFVE 164 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-------------------~~~~~~ 164 (532)
-..++|-+..++.|.+++..+.. ..+.++|++|+||||+|+.+++...-.+.+. ...+..
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~ 92 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA 92 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc
Confidence 45688999988989888886665 4569999999999999999988764322111 111111
Q ss_pred c--CchhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceEEc
Q 048213 165 E--SESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDFWV 235 (532)
Q Consensus 165 ~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~~l 235 (532)
. ...+.+..+.+.+. .+++-++|+|+++.. ..++.+...+......+.+|++|.. ..+..........+.+
T Consensus 93 ~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f 172 (504)
T PRK14963 93 ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRF 172 (504)
T ss_pred cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEe
Confidence 1 11122334444432 245679999999855 3455565554433345555555543 3332222333458999
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 236 GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 236 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
.+++.++..+.+.+.+.... ..-.++....|++.++|.+--+
T Consensus 173 ~~ls~~el~~~L~~i~~~eg-i~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 173 RRLTEEEIAGKLRRLLEAEG-REAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 99999999999988764211 1123567889999999988544
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=1.6e-08 Score=93.88 Aligned_cols=123 Identities=20% Similarity=0.136 Sum_probs=96.4
Q ss_pred cccccEEEeccccccCc-ccccccccccEEeecccccccc----ccCCcceEEeccccccCCCCCcccccCCCCCEEecC
Q 048213 391 LTNLQTLCLYYCKLQDT-SVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLS 465 (532)
Q Consensus 391 l~~L~~L~l~~~~l~~~-~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 465 (532)
-..|..+++++|.+..+ .++.-+|+++.|+++.|.+..+ .+++|.+|+|++|.. ...-..-..+-++++|.|+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~L--s~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLL--AECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchh--HhhhhhHhhhcCEeeeehh
Confidence 35678899999988874 4566678999999999988877 788999999999965 3333334567788999999
Q ss_pred CcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 466 SINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 466 ~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
+|.|+.+. +. .+|.+|..||+++ ++++.+..-.-+|+||.|++|.|.++|
T Consensus 361 ~N~iE~LS-GL-----~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIETLS-GL-----RKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhhh-hh-----Hhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 99888762 33 5789999999998 557777333334899999999999987
No 52
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.48 E-value=1e-07 Score=93.09 Aligned_cols=212 Identities=19% Similarity=0.181 Sum_probs=140.1
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-----------------------EeccCchhhHHHHHHHHhccC
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-----------------------FVEESESGRARSLCNRLKKEK 182 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-----------------------~~~~~~~~~~~~l~~~l~~~k 182 (532)
..+.+.++|.|||||||++-.+.. .... |.... +...........+..+.. ++
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~-~r 88 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIG-DR 88 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHh-hh
Confidence 348899999999999999999988 3322 54433 111122223445566666 58
Q ss_pred cEEEEEcCCCCc-ccccccccccCCCCCCeEEEEeecChHHhhhcCCCCceEEccCCCHH-HHHHHHHHHhC----CCCC
Q 048213 183 MILVILDNIWEN-LDFHAVGIPHGDDHKGCKVLLTARSLDVLSRKMDSQQDFWVGVLKED-EAWSLFKKMAG----DYIE 256 (532)
Q Consensus 183 ~~LlVlDdv~~~-~~~~~l~~~~~~~~~gs~ilvTtr~~~v~~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~----~~~~ 256 (532)
|.++|+||.-+. ++-..+...+..+...-.|+.|+|.... ......+.+.+|+.. ++.++|...+. .-.-
T Consensus 89 r~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 89 RALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 999999998655 2222222333334445568888887543 334556777877754 78899887764 2222
Q ss_pred CcchHHHHHHHHHHcCCchHHHHHHHHHHccCChHHHHHHHHH----hcCCCCCCCCCchhHHHHHHHhhcCCCCCchHH
Q 048213 257 GSEFKWVAKDVAKKCAGLPVSIVTVARALRNKRLFDWKDALEQ----LRWPSSTNFKDIQPTAYKAIELSYVKLDGDELK 332 (532)
Q Consensus 257 ~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~----~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 332 (532)
.......+.+|+++..|.|++|..+++..+.....+-...++. +... ............+.+.+||.-|... .+
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~ 242 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ER 242 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HH
Confidence 3444677899999999999999999999887755554444332 2211 1111223566788999999999998 78
Q ss_pred HHHHHHhhh-hcCChh
Q 048213 333 NIFLLIGYT-AIASID 347 (532)
Q Consensus 333 ~~f~~lalF-~~i~~~ 347 (532)
--|..++.| ..|..+
T Consensus 243 ~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 243 ALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHhcchhhhhhhhccc
Confidence 889999999 555544
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.48 E-value=9.8e-09 Score=103.03 Aligned_cols=140 Identities=22% Similarity=0.233 Sum_probs=122.4
Q ss_pred hHHhhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEeecccccccc-----ccCCcceEEeccccc
Q 048213 371 RVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLRA 444 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~~ 444 (532)
..-+.+..|.+..+|..++++..|.+|+++.|.+.. |..++.|+ |++|.+++|+++.+ .+..|.+|+.+.|..
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh
Confidence 345567777888899999999999999999999988 67787776 89999999998877 567899999999976
Q ss_pred cCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 445 SAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 445 ~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
...|..++++.+|+.|+++.|.+..+|+.. +. -.|..||++ ||++..+ |-.| .+|.+|++|.|.++|
T Consensus 179 --~slpsql~~l~slr~l~vrRn~l~~lp~El-----~~-LpLi~lDfS-cNkis~i-Pv~f-r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 179 --QSLPSQLGYLTSLRDLNVRRNHLEDLPEEL-----CS-LPLIRLDFS-CNKISYL-PVDF-RKMRHLQVLQLENNP 245 (722)
T ss_pred --hhchHHhhhHHHHHHHHHhhhhhhhCCHHH-----hC-Cceeeeecc-cCceeec-chhh-hhhhhheeeeeccCC
Confidence 778889999999999999999999999987 42 468899999 8999999 9998 899999999999887
No 54
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.47 E-value=9.7e-06 Score=80.61 Aligned_cols=173 Identities=11% Similarity=0.014 Sum_probs=104.9
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEecc---CchhhHHHHHHHHhc
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEE---SESGRARSLCNRLKK 180 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~---~~~~~~~~l~~~l~~ 180 (532)
-..++|+++.++.+..++..+..+.+.++|+.|+||||+|+.+++...... .+....+... ........+.+....
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~ 95 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFART 95 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhc
Confidence 456889999999999998877777789999999999999999988753321 1111111111 111111222222211
Q ss_pred -----cCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 181 -----EKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 181 -----~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
..+-++++|+++... ..+.+...+......+.+|+++.... +..........+.+.+++.++....+...+.
T Consensus 96 ~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~ 175 (319)
T PRK00440 96 APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAE 175 (319)
T ss_pred CCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHH
Confidence 235689999987542 23334333322234466776664322 2111112234789999999999888887765
Q ss_pred CCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 253 DYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
... ..-.++....+++.++|.+--+
T Consensus 176 ~~~-~~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 176 NEG-IEITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 221 1123567889999999987654
No 55
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.4e-05 Score=83.94 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=110.0
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc------------------------CCCCE
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE------------------------KLFDR 159 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------------~~F~~ 159 (532)
-..++|-+..++.|.+++..+.. ..+.++|+.|+||||+|+.+.+...-. +.|..
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpD 94 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVD 94 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCc
Confidence 45789999999999999987765 456889999999999999998765321 01111
Q ss_pred EE-EeccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEE-EeecChHHhhhcCCC
Q 048213 160 VI-FVEES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVL-LTARSLDVLSRKMDS 229 (532)
Q Consensus 160 ~~-~~~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTtr~~~v~~~~~~~ 229 (532)
.+ ++..+ ..+.+..+.+.+. .++.-++|+|+++.. ..++.+...+-.-..++++| +||....+.......
T Consensus 95 viEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR 174 (700)
T PRK12323 95 YIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 (700)
T ss_pred ceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH
Confidence 11 11111 1122233333332 356679999999866 34555555443333445554 555545554332333
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 230 QQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 230 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
...+.+..++.++..+.+.+.+.... .....+..+.|++.++|.|.....+
T Consensus 175 Cq~f~f~~ls~eei~~~L~~Il~~Eg-i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 175 CLQFNLKQMPPGHIVSHLDAILGEEG-IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHhcccCCCChHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 46889999999999998887664211 1122455688999999988644433
No 56
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.46 E-value=9.9e-08 Score=94.85 Aligned_cols=151 Identities=25% Similarity=0.144 Sum_probs=104.4
Q ss_pred hhHHhhhhcccccC-Cchhhhcccc---ccEEEeccccccC------ccccccc-ccccEEeecccccccc---------
Q 048213 370 ARVVIDLTYMNLLS-LPSSLGLLTN---LQTLCLYYCKLQD------TSVLGEL-KILEILRLRVNELTRA--------- 429 (532)
Q Consensus 370 ~~~~l~l~~~~l~~-lp~~~~~l~~---L~~L~l~~~~l~~------~~~i~~l-~~L~~L~l~~~~l~~~--------- 429 (532)
..+.+++.++.+.. .+..+..+.+ |++|++++|.+.+ ...+..+ ++|+.|++++|.++..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 45677888888763 4455655555 9999999998874 2345666 8999999999988732
Q ss_pred -ccCCcceEEeccccccCCC----CCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchh
Q 048213 430 -GSSQLKHLSVRGLRASAPN----PTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTS 504 (532)
Q Consensus 430 -~l~~Lr~L~l~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~ 504 (532)
.+++|++|++++|.+ ... .+..+..+++|++|++++|.++......+......+++|++|++++|. +......
T Consensus 162 ~~~~~L~~L~l~~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~ 239 (319)
T cd00116 162 RANRDLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAA 239 (319)
T ss_pred HhCCCcCEEECcCCCC-chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHH
Confidence 557899999999976 211 222345567999999999987643322222222457899999999975 5543233
Q ss_pred hhhhc----CCCccEEEeecCC
Q 048213 505 SIISS----FVGLQCLEICECP 522 (532)
Q Consensus 505 ~~~~~----L~~L~~L~l~~c~ 522 (532)
.+... .++|++|++++|.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHhccCCCceEEEccCCC
Confidence 33233 3799999999985
No 57
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.3e-05 Score=79.19 Aligned_cols=192 Identities=17% Similarity=0.137 Sum_probs=115.3
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccC--------------------CCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEK--------------------LFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~~~ 163 (532)
-..++|.+.....|...+..+.. ..+.++|++|+||||+|+.+++...... +.+...++
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 45789999888888888877766 4578999999999999999988643211 11222222
Q ss_pred ccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~~ 234 (532)
..+ ..+....+.+... .+++-++|+|+++.. ...+.+...+........+|++|.+ ..+..........+.
T Consensus 93 aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~ 172 (472)
T PRK14962 93 AASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIE 172 (472)
T ss_pred CcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEE
Confidence 211 1222333443332 245679999999754 3344454444332334444444443 334333334446899
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC-chHHHHHHHHHHc---cC-ChHHHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAG-LPVSIVTVARALR---NK-RLFDWKDAL 297 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~l~---~~-~~~~w~~~l 297 (532)
+.+++.++....+.+.+.... ..-.++....|++.++| ++.|+..+-.... +. +.+....++
T Consensus 173 f~~l~~~el~~~L~~i~~~eg-i~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 173 FRNISDELIIKRLQEVAEAEG-IEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEAL 239 (472)
T ss_pred ECCccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999888888764211 12225667888887754 5677766655432 22 555555544
No 58
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.44 E-value=6e-06 Score=75.14 Aligned_cols=170 Identities=16% Similarity=0.129 Sum_probs=91.9
Q ss_pred ccccccccchHHHHHHHHHhc-----CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHH
Q 048213 103 KDYEAFESRMSTFNDILNALK-----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNR 177 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~ 177 (532)
..-.+|+|-++.++.+.-.+. .+...-+.+||++|+||||||..+++..... |...-............+...
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~~~sg~~i~k~~dl~~il~~ 98 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FKITSGPAIEKAGDLAAILTN 98 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EEEEECCC--SCHHHHHHHHT
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eEeccchhhhhHHHHHHHHHh
Confidence 346789999888877544333 3456789999999999999999999987765 432211111222222333333
Q ss_pred HhccCcEEEEEcCCCCccc---------ccccccc-cCCCCCC-----------eEEEEeecChHHhhhcCCCC--ceEE
Q 048213 178 LKKEKMILVILDNIWENLD---------FHAVGIP-HGDDHKG-----------CKVLLTARSLDVLSRKMDSQ--QDFW 234 (532)
Q Consensus 178 l~~~k~~LlVlDdv~~~~~---------~~~l~~~-~~~~~~g-----------s~ilvTtr~~~v~~~~~~~~--~~~~ 234 (532)
+. ++-+|.+|.+..... .+..... .-..+.+ +-|=.|||...+.. ..... .+..
T Consensus 99 l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~-pLrdRFgi~~~ 175 (233)
T PF05496_consen 99 LK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSS-PLRDRFGIVLR 175 (233)
T ss_dssp ----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSH-CCCTTSSEEEE
T ss_pred cC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccch-hHHhhcceecc
Confidence 43 567889999985421 1111100 0011111 23446888755432 22222 2457
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
++.-+.+|-.++..+.+.... .+-.++.+.+|+++|.|-|--.
T Consensus 176 l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 176 LEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp ----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHH
Confidence 999999999999988765221 2334678999999999999543
No 59
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.42 E-value=5.5e-06 Score=75.51 Aligned_cols=153 Identities=18% Similarity=0.099 Sum_probs=94.7
Q ss_pred HHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc--------------------CCCCEEEEeccCc---hhhHH
Q 048213 117 DILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE--------------------KLFDRVIFVEESE---SGRAR 172 (532)
Q Consensus 117 ~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~~~~~~---~~~~~ 172 (532)
.+.+.+..+.. ..+.++|+.|+||||+|..+.+...-. .+.|......... .+.+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 34555555555 678999999999999999998875432 2223332222111 12233
Q ss_pred HHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecCh-HHhhhcCCCCceEEccCCCHHHHHH
Q 048213 173 SLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSL-DVLSRKMDSQQDFWVGVLKEDEAWS 245 (532)
Q Consensus 173 ~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~ 245 (532)
.+.+.+. .+.+-++|+||+... +.++.+...+......+.+|++|++. .+..........+.+.+++.++..+
T Consensus 83 ~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~ 162 (188)
T TIGR00678 83 ELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQ 162 (188)
T ss_pred HHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHH
Confidence 3334432 245678999998765 33555544443334456666666654 2222222334589999999999998
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHHcCCchH
Q 048213 246 LFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV 276 (532)
Q Consensus 246 Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 276 (532)
.+.+. + . .++.+..|+..++|.|.
T Consensus 163 ~l~~~-g--i----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 163 WLIRQ-G--I----SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHc-C--C----CHHHHHHHHHHcCCCcc
Confidence 88876 2 1 15668899999999885
No 60
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.6e-05 Score=86.16 Aligned_cols=174 Identities=16% Similarity=0.169 Sum_probs=110.2
Q ss_pred ccccccchHHHHHHHHHhcCCCceE-EEEEccCCCchHHHHHHHHHHhhccCC-------------------CCEEE-Ee
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNM-LGIYGMGGIRKTTPAKEVAIKAENEKL-------------------FDRVI-FV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~v-v~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~-~~ 163 (532)
-..++|-+..++.|.+++..+.+.- +.++|+.|+||||+|+.+++...-... |...+ ++
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 4578899999999999888776654 589999999999999999986532211 11111 21
Q ss_pred cc--CchhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEee-cChHHhhhcCCCCceEE
Q 048213 164 EE--SESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTA-RSLDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTt-r~~~v~~~~~~~~~~~~ 234 (532)
.. ...+.+..+.+.+. .+++-++|||++... ..++.+...+-.-....++|++| ....+..........+.
T Consensus 95 Aas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~ 174 (944)
T PRK14949 95 AASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFN 174 (944)
T ss_pred cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEe
Confidence 11 11122333433332 356779999999865 44555544443323455555544 44444322233346899
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIV 279 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 279 (532)
+.+|+.++..+.+.+.+... ......+....|++.++|.|--+.
T Consensus 175 fkpLs~eEI~~~L~~il~~E-gI~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 175 LKSLTQDEIGTQLNHILTQE-QLPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 99999999999888766421 122235678889999999875443
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.3e-06 Score=87.16 Aligned_cols=173 Identities=15% Similarity=0.114 Sum_probs=108.6
Q ss_pred ccccccchHHHHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHhhcc-------------------CCCCEEE-Ee
Q 048213 105 YEAFESRMSTFNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKAENE-------------------KLFDRVI-FV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~-~~ 163 (532)
-..++|.+..++.|.+++..+. ...+.++|+.|+||||+|+.+++...-. +.|...+ .+
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEID 93 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEID 93 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEec
Confidence 4678999999999999998665 4577899999999999999998764321 1121111 22
Q ss_pred ccC--chhhHHHHHHHH----hccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRL----KKEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~ 234 (532)
..+ ..+.+..+.... ..+++-++|+|++... ...+.+...+..-..+.++|++|.+.. +..........+.
T Consensus 94 AAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~fe 173 (702)
T PRK14960 94 AASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFT 173 (702)
T ss_pred ccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheee
Confidence 111 111222233222 1246678999999865 344555444433334566776665533 3222233446899
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
+.+++.++..+.+.+.+.... ..-..+....|++.++|-+-.+
T Consensus 174 FkpLs~eEI~k~L~~Il~kEg-I~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 174 LRPLAVDEITKHLGAILEKEQ-IAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred ccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 999999999988887664221 1223556788999999876444
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.1e-08 Score=95.73 Aligned_cols=131 Identities=24% Similarity=0.191 Sum_probs=64.8
Q ss_pred hhccccccEEEeccccccC----cccccccccccEEeecccccccc-------ccCCcceEEecccccc-----------
Q 048213 388 LGLLTNLQTLCLYYCKLQD----TSVLGELKILEILRLRVNELTRA-------GSSQLKHLSVRGLRAS----------- 445 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~~l~~----~~~i~~l~~L~~L~l~~~~l~~~-------~l~~Lr~L~l~~~~~~----------- 445 (532)
...+++++.|+|++|-++. ...+..|++|+.|+|+.|.+... .+++|+.|.|++|.+.
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4556666666666665554 23445666666666666644332 3445555555555431
Q ss_pred -------------CCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCcc--chh---hhh
Q 048213 446 -------------APNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCL--FTS---SII 507 (532)
Q Consensus 446 -------------~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l--~p~---~~~ 507 (532)
+.....+...+..|++|||++|++..++.... ...|+.|..|+++.|. +.++ |+- ...
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~---~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK---VGTLPGLNQLNLSSTG-IASIAEPDVESLDKT 297 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc---cccccchhhhhccccC-cchhcCCCccchhhh
Confidence 11122223344556666666665555553220 0345666666666543 3332 111 001
Q ss_pred hcCCCccEEEeecCC
Q 048213 508 SSFVGLQCLEICECP 522 (532)
Q Consensus 508 ~~L~~L~~L~l~~c~ 522 (532)
..+++|++|++..++
T Consensus 298 ~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 298 HTFPKLEYLNISENN 312 (505)
T ss_pred cccccceeeecccCc
Confidence 245666777666554
No 63
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=9.6e-06 Score=81.93 Aligned_cols=169 Identities=13% Similarity=0.063 Sum_probs=104.3
Q ss_pred cccccchHHHHHHHHHhcCCC----------ceEEEEEccCCCchHHHHHHHHHHhhcc-------------------CC
Q 048213 106 EAFESRMSTFNDILNALKSPD----------VNMLGIYGMGGIRKTTPAKEVAIKAENE-------------------KL 156 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~----------~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~ 156 (532)
..++|-+..++.+.+++..+. ...+.++|+.|+|||++|..+++..--. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 357898888998888887543 4668899999999999999987743211 12
Q ss_pred CCEEEEeccCc---hhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecCh-HHhhhc
Q 048213 157 FDRVIFVEESE---SGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSL-DVLSRK 226 (532)
Q Consensus 157 F~~~~~~~~~~---~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~v~~~~ 226 (532)
-|..+...... .+.+..+.+... .+++-++++|+++.. ...+.+...+..-..+..+|++|.+. .+....
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 23222221111 122334444432 245568889999865 23344433333323455555555553 443332
Q ss_pred CCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHH
Q 048213 227 MDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVT 280 (532)
Q Consensus 227 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 280 (532)
......+.+.+++.++..+.+.+..+. ..+.+..++..++|.|.....
T Consensus 165 rSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 165 RSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHIGRARR 212 (394)
T ss_pred HhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHH
Confidence 333468999999999999888754321 145578899999999864433
No 64
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.38 E-value=1.5e-05 Score=80.47 Aligned_cols=177 Identities=15% Similarity=0.113 Sum_probs=111.7
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc--------------------CCCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE--------------------KLFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~~ 163 (532)
-..++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+.....-. .+++...++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~ 92 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEID 92 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEee
Confidence 45678999999999998886654 467899999999999999998764311 134443332
Q ss_pred ccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~ 234 (532)
... ..+....+.+.+. .+++-++|+|++... ...+.+...+......+.+|++|.+.. +..........+.
T Consensus 93 ~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 172 (355)
T TIGR02397 93 AASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFD 172 (355)
T ss_pred ccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEE
Confidence 221 1122334444433 135568999998654 334555444433334566666765544 2222223345788
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVA 282 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 282 (532)
+.++++++..+.+...+.... ..-.++.+..+++.++|.|..+....
T Consensus 173 ~~~~~~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 173 FKRIPLEDIVERLKKILDKEG-IKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred cCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 899999999888887664211 11125678889999999886554443
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.37 E-value=2.1e-06 Score=74.34 Aligned_cols=112 Identities=19% Similarity=0.099 Sum_probs=66.8
Q ss_pred ccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCc--hhhHH--------HH-HHH
Q 048213 109 ESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESE--SGRAR--------SL-CNR 177 (532)
Q Consensus 109 ~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~--~~~~~--------~l-~~~ 177 (532)
.|++..++.+...+.....+.+.|+|++|+|||++|+.+++..... ............ ..... .. ...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL 79 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHh
Confidence 3788889999998877667889999999999999999999876422 122222211111 00000 01 111
Q ss_pred HhccCcEEEEEcCCCCc-----ccccccccccCC---CCCCeEEEEeecChH
Q 048213 178 LKKEKMILVILDNIWEN-----LDFHAVGIPHGD---DHKGCKVLLTARSLD 221 (532)
Q Consensus 178 l~~~k~~LlVlDdv~~~-----~~~~~l~~~~~~---~~~gs~ilvTtr~~~ 221 (532)
....+..++++||++.. ..+..+...+.. ...+..+|+||....
T Consensus 80 ~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 11246789999999853 112221111111 135778888887643
No 66
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.37 E-value=1.1e-07 Score=105.10 Aligned_cols=74 Identities=32% Similarity=0.308 Sum_probs=54.5
Q ss_pred HhhHHhhhhcc-cccCCchhhhccccccEEEeccccccC-cccccccccccEEeeccccccc----c--ccCCcceEEec
Q 048213 369 RARVVIDLTYM-NLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTR----A--GSSQLKHLSVR 440 (532)
Q Consensus 369 ~~~~~l~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~----~--~l~~Lr~L~l~ 440 (532)
...+++|+++| ++.++|.+|+.|.+||||+++++.+.. |..+.+|++|.+|++..+.-.. + .+.+||+|.+.
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 33477888865 567789999999999999999888887 7788888888888887663211 1 36667777665
Q ss_pred cc
Q 048213 441 GL 442 (532)
Q Consensus 441 ~~ 442 (532)
..
T Consensus 651 ~s 652 (889)
T KOG4658|consen 651 RS 652 (889)
T ss_pred cc
Confidence 44
No 67
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.3e-05 Score=79.83 Aligned_cols=178 Identities=13% Similarity=0.075 Sum_probs=110.3
Q ss_pred cccccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc-----C--CC--CE------------
Q 048213 102 NKDYEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE-----K--LF--DR------------ 159 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~-----~--~F--~~------------ 159 (532)
+.....++|.++..+.+...+..+.. ..+.|+|+.|+||||+|..+++..--. . .+ .+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQG 98 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcC
Confidence 44567789999999999999887654 468999999999999999988764321 0 00 00
Q ss_pred -----EEEe----ccC----c---hhhHHHHHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeE-EEEe
Q 048213 160 -----VIFV----EES----E---SGRARSLCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCK-VLLT 216 (532)
Q Consensus 160 -----~~~~----~~~----~---~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~-ilvT 216 (532)
.... ... . .+.+..+.+.+. .+++-++|+|+++... ..+.+...+..-..+.. |++|
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0010 100 0 122334444443 3567799999998653 34444333322223344 4455
Q ss_pred ecChHHhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 048213 217 ARSLDVLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVA 282 (532)
Q Consensus 217 tr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 282 (532)
++...+..........+.+.+++.++..+.+........ -.++....+++.++|.|.....+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444333332233345899999999999999987432211 224557889999999998655443
No 68
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.36 E-value=1.9e-05 Score=83.95 Aligned_cols=220 Identities=17% Similarity=0.124 Sum_probs=126.8
Q ss_pred ccccccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE--Eec--------------
Q 048213 101 SNKDYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI--FVE-------------- 164 (532)
Q Consensus 101 ~~~~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--~~~-------------- 164 (532)
++..+...+-|....+.+.+ ..+.+.+.|.-|+|.|||||+......... .-...+ .+.
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~--~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD--GAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc--ccceeEeecCCccCCHHHHHHHHHH
Confidence 33445566667655544333 347899999999999999999998762221 122222 000
Q ss_pred ----------------------cCchhhHHHHHHHHhc-cCcEEEEEcCCCCcc--cc-cccccccCCCCCCeEEEEeec
Q 048213 165 ----------------------ESESGRARSLCNRLKK-EKMILVILDNIWENL--DF-HAVGIPHGDDHKGCKVLLTAR 218 (532)
Q Consensus 165 ----------------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~~-~~l~~~~~~~~~gs~ilvTtr 218 (532)
.+.......+...+.. .++..+||||..-.. .. ..+..-+.....+-.+|||||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 0111122333333332 467899999976432 11 222222233456788999999
Q ss_pred ChHHhhh-cCC-CCceEEcc----CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHccC-ChH
Q 048213 219 SLDVLSR-KMD-SQQDFWVG----VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVARALRNK-RLF 291 (532)
Q Consensus 219 ~~~v~~~-~~~-~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~ 291 (532)
+..-... .+. .....+++ .++.+|+.++|....+.. -.+...+.+.....|=+-|+..++=.+++. +.+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~----Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP----LDAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC----CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 8754210 011 11123333 588999999998765422 224557889999999999998888777733 333
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHH-HHHhhcCCCCCchHHHHHHHHhhh
Q 048213 292 DWKDALEQLRWPSSTNFKDIQPTAYK-AIELSYVKLDGDELKNIFLLIGYT 341 (532)
Q Consensus 292 ~w~~~l~~~~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~~k~~f~~lalF 341 (532)
.-...+.- ..+-+.. ..+-=++.||++ +|..++-+|++
T Consensus 245 q~~~~LsG-----------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl 283 (894)
T COG2909 245 QSLRGLSG-----------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVL 283 (894)
T ss_pred HHhhhccc-----------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhH
Confidence 22221110 0111111 122235789999 99999999998
No 69
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=5.9e-07 Score=65.25 Aligned_cols=60 Identities=30% Similarity=0.335 Sum_probs=49.1
Q ss_pred CCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCC
Q 048213 432 SQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 432 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
++|++|++++|++ ..-.+..|.++++|++|+|++|.++.+|+..+ ..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f----~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAF----SNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTT----TTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHH----cCCCCCCEEeCcCCc
Confidence 4688888888876 33344688999999999999999999988763 479999999999865
No 70
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=7e-06 Score=83.81 Aligned_cols=173 Identities=15% Similarity=0.115 Sum_probs=109.2
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhccC----------------------------
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAENEK---------------------------- 155 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~~---------------------------- 155 (532)
-..++|.+..++.|.+++..+.++ .+.++|+.|+||||+|..+++...-..
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 457889999999998888876654 488999999999999999987653211
Q ss_pred CCCEEEEeccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEee-cChHHhhhc
Q 048213 156 LFDRVIFVEES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTA-RSLDVLSRK 226 (532)
Q Consensus 156 ~F~~~~~~~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTt-r~~~v~~~~ 226 (532)
+++...++..+ ..+.+..+.+.+. .+.+-++|+|++... ..++.+...+..-...+.+|++| +...+....
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 22222222211 1233444455552 245668999999865 34666655554334456665555 433433222
Q ss_pred CCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 227 MDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 227 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
......+++.++++++..+.+...+... ...-..+.+..|+..++|.+--+
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~-g~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAE-GISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHH
Confidence 2223578899999999888887765311 11223667889999999977533
No 71
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.33 E-value=1.5e-05 Score=85.66 Aligned_cols=178 Identities=14% Similarity=0.054 Sum_probs=100.5
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCC------EEEEeccC----c-------
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFD------RVIFVEES----E------- 167 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~------~~~~~~~~----~------- 167 (532)
...++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+. ...++... .
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 456889999999988888766667899999999999999999987654322221 01111000 0
Q ss_pred ----------------------------------------------hhhHHHHHHHHhccCcEEEEEcCCCCc--ccccc
Q 048213 168 ----------------------------------------------SGRARSLCNRLKKEKMILVILDNIWEN--LDFHA 199 (532)
Q Consensus 168 ----------------------------------------------~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~ 199 (532)
......+.+.+. ++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccchh
Confidence 001122233333 24444444443332 23555
Q ss_pred cccccCCCCCCeEEEE--eecChHHh-hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchH
Q 048213 200 VGIPHGDDHKGCKVLL--TARSLDVL-SRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV 276 (532)
Q Consensus 200 l~~~~~~~~~gs~ilv--Ttr~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 276 (532)
++..+....+...+++ ||++.... .........+.+.+++.++.+.++.+.+..... .-.++..+.|.+.+..-+-
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls~eal~~L~~ys~~gRr 390 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLAAGVEELIARYTIEGRK 390 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHCCCcHHH
Confidence 5444444444444554 56644321 111122346788999999999999987653211 1124455556665555566
Q ss_pred HHHHHHHH
Q 048213 277 SIVTVARA 284 (532)
Q Consensus 277 ai~~~~~~ 284 (532)
|+..++..
T Consensus 391 aln~L~~~ 398 (615)
T TIGR02903 391 AVNILADV 398 (615)
T ss_pred HHHHHHHH
Confidence 66666544
No 72
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=6.5e-06 Score=82.45 Aligned_cols=175 Identities=15% Similarity=0.069 Sum_probs=109.6
Q ss_pred cccccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhccCC-----C------------------
Q 048213 102 NKDYEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAENEKL-----F------------------ 157 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F------------------ 157 (532)
+.....++|.+...+.+.+.+..+... .+.++|+.|+||+|+|..+++..--+.. +
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 334567899999999999988877654 5889999999999999988875421110 0
Q ss_pred -------CEEEEe----ccC----c---hhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEE
Q 048213 158 -------DRVIFV----EES----E---SGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKV 213 (532)
Q Consensus 158 -------~~~~~~----~~~----~---~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~i 213 (532)
|..... ... . .+.+..+.+.+. .+.+-++|+|+++.. ...+.+...+..-..++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 001011 110 0 122333333332 256678999999755 3344454444333345666
Q ss_pred EEeecChH-HhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 214 LLTARSLD-VLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 214 lvTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
|++|.+.. +..........+.+.+++.++..+++....... .......++..++|.|+....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 66666653 333333444689999999999999998764321 1222367899999999865444
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.33 E-value=5.7e-06 Score=84.10 Aligned_cols=167 Identities=17% Similarity=0.228 Sum_probs=98.3
Q ss_pred cccccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eec---
Q 048213 104 DYEAFESRMSTFNDILNALK----S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVE--- 164 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~--- 164 (532)
....+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+++++..... |-... +..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~--~i~v~~~~l~~~~~ 206 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FIRVVGSELVQKFI 206 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC--EEEeehHHHhHhhc
Confidence 34568899999999888663 1 345679999999999999999999875532 32221 000
Q ss_pred cCchhhHHHHHHHHhccCcEEEEEcCCCCcc------------cc-ccc---ccccC--CCCCCeEEEEeecChHHhh-h
Q 048213 165 ESESGRARSLCNRLKKEKMILVILDNIWENL------------DF-HAV---GIPHG--DDHKGCKVLLTARSLDVLS-R 225 (532)
Q Consensus 165 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~-~~l---~~~~~--~~~~gs~ilvTtr~~~v~~-~ 225 (532)
.........+.+........+|++||++... .+ ..+ ...+. ....+..||.||....... .
T Consensus 207 g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~a 286 (389)
T PRK03992 207 GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPA 286 (389)
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHH
Confidence 0111223334444333466899999997531 01 111 11111 1123567787887654331 1
Q ss_pred cC---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 226 KM---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 226 ~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
.. .-...+.+.+.+.++-.++|..+.......... ....+++.+.|.
T Consensus 287 llRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 287 ILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred HcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 12 123578999999999999999887633222111 145566666664
No 74
>PRK08727 hypothetical protein; Validated
Probab=98.33 E-value=1.3e-05 Score=75.54 Aligned_cols=168 Identities=15% Similarity=0.071 Sum_probs=96.0
Q ss_pred ccccchH-HHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhccCcEE
Q 048213 107 AFESRMS-TFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKKEKMIL 185 (532)
Q Consensus 107 ~~~gR~~-~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~L 185 (532)
.|++... .+..+...........+.|+|..|+|||.|++++++....++ +..................+.+. +.-+
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~l~--~~dl 96 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG-RSSAYLPLQAAAGRLRDALEALE--GRSL 96 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEEeHHHhhhhHHHHHHHHh--cCCE
Confidence 3544433 333333333233345799999999999999999988765443 33333222222222223333443 3459
Q ss_pred EEEcCCCCcc---cccc-cccccCC-CCCCeEEEEeecChHHh-----h---hcCCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 186 VILDNIWENL---DFHA-VGIPHGD-DHKGCKVLLTARSLDVL-----S---RKMDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 186 lVlDdv~~~~---~~~~-l~~~~~~-~~~gs~ilvTtr~~~v~-----~---~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
||+||+.... .|.. +...+.. ..+|..||+|++...-. . ..+....++.+++++.++-.+++.+.+.
T Consensus 97 LiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 97 VALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred EEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 9999997542 2322 2111111 12456799999853221 0 1122245889999999999999998765
Q ss_pred CCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 253 DYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
... ..-.++...-|++.+.|-.-.+
T Consensus 177 ~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 177 RRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 211 2223566778888887655443
No 75
>PRK09087 hypothetical protein; Validated
Probab=98.32 E-value=1.5e-05 Score=74.54 Aligned_cols=143 Identities=13% Similarity=0.011 Sum_probs=86.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhccCcEEEEEcCCCCccc-cccccccc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKKEKMILVILDNIWENLD-FHAVGIPH 204 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-~~~l~~~~ 204 (532)
..+.+.|+|+.|+|||+|++.+++..... .... ......+...+.+ -+|++||+..... -+.+...+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~------~i~~---~~~~~~~~~~~~~---~~l~iDDi~~~~~~~~~lf~l~ 110 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDAL------LIHP---NEIGSDAANAAAE---GPVLIEDIDAGGFDETGLFHLI 110 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCCE------EecH---HHcchHHHHhhhc---CeEEEECCCCCCCCHHHHHHHH
Confidence 34679999999999999999988764332 1111 1111222223332 3788899965321 11121111
Q ss_pred CC-CCCCeEEEEeecChHHh--------hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 205 GD-DHKGCKVLLTARSLDVL--------SRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 205 ~~-~~~gs~ilvTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
.. ...|..+|+|++...-. ........++++++++.++-.+++.+.+... ...--+++..-|++.+.|..
T Consensus 111 n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~-~~~l~~ev~~~La~~~~r~~ 189 (226)
T PRK09087 111 NSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR-QLYVDPHVVYYLVSRMERSL 189 (226)
T ss_pred HHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhhhH
Confidence 11 13467788888743221 1123445789999999999999999887532 12223677888888888877
Q ss_pred HHHHHH
Q 048213 276 VSIVTV 281 (532)
Q Consensus 276 Lai~~~ 281 (532)
-++..+
T Consensus 190 ~~l~~~ 195 (226)
T PRK09087 190 FAAQTI 195 (226)
T ss_pred HHHHHH
Confidence 666543
No 76
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=9.3e-06 Score=84.99 Aligned_cols=177 Identities=12% Similarity=0.132 Sum_probs=108.0
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc-------------------CCCCEEE-Ee
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE-------------------KLFDRVI-FV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~-~~ 163 (532)
-..++|-+..++.+...+..+.. ..+.++|+.|+||||+|+.+++...-. ..|...+ ++
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 45688999999999998886654 457899999999999999998754311 0121221 11
Q ss_pred ccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEE-EeecChHHhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVL-LTARSLDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTtr~~~v~~~~~~~~~~~~ 234 (532)
..+ ..+....+.+.+. .+++-++|+|++... ..++.+...+-.-...+.+| +||....+..........++
T Consensus 95 aas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~ 174 (546)
T PRK14957 95 AASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLH 174 (546)
T ss_pred cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEE
Confidence 111 1112223333322 256679999999755 34555544443333455555 55544444322233346899
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch-HHHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP-VSIVTVA 282 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 282 (532)
+.+++.++....+.+.+.... ..-.++....|++.++|-+ -|+..+-
T Consensus 175 f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 175 LKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred eCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999998888777543211 1223566788999999955 4554443
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=8e-06 Score=84.91 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=109.0
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccCCC------------------------CE
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEKLF------------------------DR 159 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F------------------------~~ 159 (532)
-..++|-+..+..+...+..+.. ..+.++|+.|+||||+|+.+++..--.... +.
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv 99 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDI 99 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcE
Confidence 45678999999988887776553 578899999999999999998865322110 11
Q ss_pred EEEeccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEE-EeecChHHhhhcCCCC
Q 048213 160 VIFVEES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVL-LTARSLDVLSRKMDSQ 230 (532)
Q Consensus 160 ~~~~~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTtr~~~v~~~~~~~~ 230 (532)
..++..+ ..+.+..+.+... .+++-++|+|+++.. ..++.+...+..-...+.+| +||+...+........
T Consensus 100 ~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc 179 (507)
T PRK06645 100 IEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRC 179 (507)
T ss_pred EEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcc
Confidence 1111111 1122222333222 246678999999875 44666655554444555655 4555555543333344
Q ss_pred ceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 231 QDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 231 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
..+.+.+++.++....+.+.+.... ..-..+....|++.++|.+--+
T Consensus 180 ~~~ef~~ls~~el~~~L~~i~~~eg-i~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 180 QRYDLRRLSFEEIFKLLEYITKQEN-LKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred eEEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 5789999999999999988775221 1122456778999999976433
No 78
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.29 E-value=1.2e-05 Score=76.01 Aligned_cols=164 Identities=12% Similarity=0.035 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhccCcEEEEEcCCCC
Q 048213 114 TFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKKEKMILVILDNIWE 193 (532)
Q Consensus 114 ~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 193 (532)
.+..+.++....+.+.+.|+|+.|+|||+|++.+++....++ .................+.+.+.+ --+|++||+..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~-~~v~y~~~~~~~~~~~~~~~~~~~--~dlliiDdi~~ 108 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRG-RAVGYVPLDKRAWFVPEVLEGMEQ--LSLVCIDNIEC 108 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEEHHHHhhhhHHHHHHhhh--CCEEEEeChhh
Confidence 444444444445557899999999999999999998655321 222221111111112233333332 24899999975
Q ss_pred c---ccccccc-cccCC-CCCC-eEEEEeecChHHh--------hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcc
Q 048213 194 N---LDFHAVG-IPHGD-DHKG-CKVLLTARSLDVL--------SRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSE 259 (532)
Q Consensus 194 ~---~~~~~l~-~~~~~-~~~g-s~ilvTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 259 (532)
. ..|+... ..+.. ...| .++|+||+...-. ...+....++.+.+++.++-.+++.+.+... ...-
T Consensus 109 ~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~-~~~l 187 (235)
T PRK08084 109 IAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR-GFEL 187 (235)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc-CCCC
Confidence 4 2343211 11111 1123 4688888855321 1123344689999999999999988766422 1223
Q ss_pred hHHHHHHHHHHcCCchHHHHHH
Q 048213 260 FKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 260 ~~~~~~~i~~~c~glPLai~~~ 281 (532)
-+++..-|++.+.|-.-++..+
T Consensus 188 ~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 188 PEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred CHHHHHHHHHhhcCCHHHHHHH
Confidence 3677788888888765544433
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=7.7e-06 Score=83.47 Aligned_cols=173 Identities=18% Similarity=0.096 Sum_probs=108.5
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhccCC--------------------CCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAENEKL--------------------FDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~~~--------------------F~~~~~~ 163 (532)
-..++|-+..+..|..++..+... .+.++|+.|+||||+|+.+++...-... .+..-++
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEId 96 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEID 96 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeec
Confidence 456889999999999988877654 5799999999999999999886432110 0111011
Q ss_pred ccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEE-EeecChHHhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVL-LTARSLDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTtr~~~v~~~~~~~~~~~~ 234 (532)
..+ ..+.+..+.+.+. .++.-++|+|+++.. +.++.+...+-.-.....+| .||....+..........|.
T Consensus 97 aas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~ 176 (484)
T PRK14956 97 AASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFI 176 (484)
T ss_pred hhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheee
Confidence 111 1122333333332 356679999999865 44666655443323344444 45544444332333345799
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
+.+++.++..+.+.+.+.... ..-.++....|++.++|.+--.
T Consensus 177 f~~ls~~~i~~~L~~i~~~Eg-i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 177 FKKVPLSVLQDYSEKLCKIEN-VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred ecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCChHHHH
Confidence 999999998888887654211 1223567889999999987433
No 80
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=1.9e-06 Score=93.01 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=41.0
Q ss_pred ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccc-cccccccccccccCCCccEEEeccCCCCCccchhhhhh
Q 048213 430 GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIE-RIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIIS 508 (532)
Q Consensus 430 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~ 508 (532)
.+++|+.|+|++|.+ ....|..++.+++|++|+|++|++. .+|+.+ .+|++|++|+|++|+....+ |..+.+
T Consensus 440 ~L~~L~~L~Ls~N~l-~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-----~~L~~L~~L~Ls~N~l~g~i-P~~l~~ 512 (623)
T PLN03150 440 KLRHLQSINLSGNSI-RGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-----GQLTSLRILNLNGNSLSGRV-PAALGG 512 (623)
T ss_pred CCCCCCEEECCCCcc-cCcCChHHhCCCCCCEEECCCCCCCCCCchHH-----hcCCCCCEEECcCCcccccC-ChHHhh
Confidence 344455555555544 3344445555555555555555554 333333 44555555555554433344 444322
Q ss_pred cCCCccEEEeecCCc
Q 048213 509 SFVGLQCLEICECPV 523 (532)
Q Consensus 509 ~L~~L~~L~l~~c~~ 523 (532)
.+.++..+++.+++.
T Consensus 513 ~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 513 RLLHRASFNFTDNAG 527 (623)
T ss_pred ccccCceEEecCCcc
Confidence 223444555554443
No 81
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=9.3e-05 Score=78.66 Aligned_cols=175 Identities=12% Similarity=0.125 Sum_probs=107.6
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc-------------------------CCCC
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE-------------------------KLFD 158 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------------~~F~ 158 (532)
-..++|-+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++..--. .|.|
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D 94 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVD 94 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCc
Confidence 45788999999999998887665 566899999999999999997653211 1112
Q ss_pred EEEEeccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEee-cChHHhhhcCCC
Q 048213 159 RVIFVEES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTA-RSLDVLSRKMDS 229 (532)
Q Consensus 159 ~~~~~~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTt-r~~~v~~~~~~~ 229 (532)
...++..+ ..+.+..+.+... .++.-++|||+++.. ..++.+...+..-...+++|++| ....+.......
T Consensus 95 ~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSR 174 (618)
T PRK14951 95 YTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSR 174 (618)
T ss_pred eeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHh
Confidence 11121111 1112223333322 245568999999865 34555544443333455555544 444444333334
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHH
Q 048213 230 QQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVT 280 (532)
Q Consensus 230 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 280 (532)
...+.+.+++.++..+.+.+.+.... ..-..+....|++.++|.+--+..
T Consensus 175 c~~~~f~~Ls~eei~~~L~~i~~~eg-i~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 175 CLQFNLRPMAPETVLEHLTQVLAAEN-VPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred ceeeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 56899999999999988887664211 112256678889999987644433
No 82
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.25 E-value=5.1e-07 Score=92.66 Aligned_cols=142 Identities=26% Similarity=0.282 Sum_probs=114.1
Q ss_pred hhHHhhhhcccccCCchhhhccccccEEEeccccccCccc-ccccccccEEeecccccccc----ccC-CcceEEecccc
Q 048213 370 ARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSV-LGELKILEILRLRVNELTRA----GSS-QLKHLSVRGLR 443 (532)
Q Consensus 370 ~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~-i~~l~~L~~L~l~~~~l~~~----~l~-~Lr~L~l~~~~ 443 (532)
+.+.+++.++.+..+|..++.+++|+.|++..|.+.+.+. .+.+++|+.|++++|++..+ ..+ .|..|.+++|.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 5677888888888888788899999999999999888544 44888999999999988877 133 48888888885
Q ss_pred ccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
. ...+..+.++..+..|.+.+|.+..++..+ ..+++|++|++++ +.+..+ +. + +.+.+|++|++++..
T Consensus 221 ~--~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~-----~~l~~l~~L~~s~-n~i~~i-~~-~-~~~~~l~~L~~s~n~ 288 (394)
T COG4886 221 I--IELLSSLSNLKNLSGLELSNNKLEDLPESI-----GNLSNLETLDLSN-NQISSI-SS-L-GSLTNLRELDLSGNS 288 (394)
T ss_pred c--eecchhhhhcccccccccCCceeeeccchh-----ccccccceecccc-cccccc-cc-c-cccCccCEEeccCcc
Confidence 4 456677888888888888888887776666 7788899999996 568888 44 4 789999999998754
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=0.0001 Score=78.55 Aligned_cols=173 Identities=14% Similarity=0.143 Sum_probs=107.6
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhcc--------------------CCCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAENE--------------------KLFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~~ 163 (532)
-..++|-+..++.|.+.+..+.+. .+.++|+.|+||||+|+.+++..--. .|.|...++
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieid 94 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEID 94 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeec
Confidence 457889999999999988876654 46799999999999999998764321 111222122
Q ss_pred cc--CchhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEE-EeecChHHhhhcCCCCceEE
Q 048213 164 EE--SESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVL-LTARSLDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTtr~~~v~~~~~~~~~~~~ 234 (532)
.. ...+.+..+.+.+. .+++-++|+|+++.. ...+.+...+-.-....++| +||....+..........+.
T Consensus 95 aas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~ 174 (647)
T PRK07994 95 AASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 (647)
T ss_pred ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEee
Confidence 21 11122333333332 356679999999865 34555544443323345454 45544444332233346899
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
+.+++.++....+.+.+.... .....+....|++.++|.+--+
T Consensus 175 f~~Ls~~ei~~~L~~il~~e~-i~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 175 LKALDVEQIRQQLEHILQAEQ-IPFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred CCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 999999999988887653111 1223556788999999977533
No 84
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.3e-05 Score=82.29 Aligned_cols=171 Identities=17% Similarity=0.115 Sum_probs=107.2
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc----------------------------C
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE----------------------------K 155 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~----------------------------~ 155 (532)
-..++|-+..++.|.+++..+.+ ..+.++|+.|+||||+|..+++..--. .
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 45788999999999998887665 458899999999999999988765321 1
Q ss_pred CCCEEEEeccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEE-EeecChHHhhhc
Q 048213 156 LFDRVIFVEES--ESGRARSLCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVL-LTARSLDVLSRK 226 (532)
Q Consensus 156 ~F~~~~~~~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~il-vTtr~~~v~~~~ 226 (532)
+|+...++..+ ..+.+..+.+.+. .+.+-++|+|+++... ..+.+...+..-...+.+| +|++...+....
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 23333333211 1233444444442 2455689999987653 3455544443323345544 444444443333
Q ss_pred CCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchH
Q 048213 227 MDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV 276 (532)
Q Consensus 227 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 276 (532)
......+++.+++.++....+.+.+.... ..-..+.+..|+..++|..-
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHH
Confidence 34456899999999998888876553111 11235678889999999544
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=1.3e-05 Score=84.99 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=106.0
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc--------------------CCCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE--------------------KLFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~~ 163 (532)
-..++|.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++..--. .++|...++
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 46789999999999999887664 467999999999999999998753211 112221122
Q ss_pred ccC--chhhHHHHHHHH----hccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecCh-HHhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRL----KKEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSL-DVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~-~v~~~~~~~~~~~~ 234 (532)
..+ ..+.+..+.+.. ..+++-++|+|++.... ..+.+...+..-...+++|++|.+. .+..........+.
T Consensus 95 aAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~ 174 (709)
T PRK08691 95 AASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFV 174 (709)
T ss_pred ccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhh
Confidence 111 111222232222 12466799999997653 2334433332223445666665443 33222222234678
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVT 280 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 280 (532)
+.+++.++....+.+.+.... ..-..+....|++.++|.+.-+..
T Consensus 175 f~~Ls~eeI~~~L~~Il~kEg-i~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 175 LRNMTAQQVADHLAHVLDSEK-IAYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred cCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHHHH
Confidence 889999999988887665221 122356788999999988754433
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.8e-05 Score=80.28 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=108.6
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhc--------------------cCCCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAEN--------------------EKLFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~--------------------~~~F~~~~~~ 163 (532)
-..++|-+..++.+.+.+..+... .+.++|+.|+||||+|+.+++..-- ..+.|..-++
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 457889999998888888776654 7899999999999999999874210 1122322233
Q ss_pred ccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEee-cChHHhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTA-RSLDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTt-r~~~v~~~~~~~~~~~~ 234 (532)
..+ ..+.+..+.+... .+++-++|+|++... ...+.+...+..-...+++|++| ....+..........+.
T Consensus 92 aas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~ 171 (491)
T PRK14964 92 AASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFD 171 (491)
T ss_pred cccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeee
Confidence 221 1122333333332 245668999999765 33555544443334456666555 44444433334456889
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
+.+++.++....+.+.+.... ..-.++....|++.++|.+-.+
T Consensus 172 f~~l~~~el~~~L~~ia~~Eg-i~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 172 LQKIPTDKLVEHLVDIAKKEN-IEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred cccccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 999999999998888765221 1122556788999998877533
No 87
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=4.7e-05 Score=77.23 Aligned_cols=171 Identities=18% Similarity=0.153 Sum_probs=103.5
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc------CCCCEEEEecc--Cc--hhhHHH
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE------KLFDRVIFVEE--SE--SGRARS 173 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~------~~F~~~~~~~~--~~--~~~~~~ 173 (532)
-..++|.+...+.+.+++..+.. +.+.++|+.|+||||+|..+.+..... ..|...++... +. .+....
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 95 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRN 95 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHH
Confidence 45778999999999999886654 478899999999999999998764321 12222221111 11 123333
Q ss_pred HHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeec-ChHHhhhcCCCCceEEccCCCHHHHHHH
Q 048213 174 LCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTAR-SLDVLSRKMDSQQDFWVGVLKEDEAWSL 246 (532)
Q Consensus 174 l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr-~~~v~~~~~~~~~~~~l~~L~~~~~~~L 246 (532)
+.+.+. .+++-++++|++.... .++.+...+......+.+|++|. ...+..........++..++++++....
T Consensus 96 l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~ 175 (367)
T PRK14970 96 LIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEH 175 (367)
T ss_pred HHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHH
Confidence 333322 1355689999987542 34454333322233455555553 3233222223345789999999999888
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHcCCchH
Q 048213 247 FKKMAGDYIEGSEFKWVAKDVAKKCAGLPV 276 (532)
Q Consensus 247 f~~~~~~~~~~~~~~~~~~~i~~~c~glPL 276 (532)
+...+.... ..-..+....++..++|-+-
T Consensus 176 l~~~~~~~g-~~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 176 LAGIAVKEG-IKFEDDALHIIAQKADGALR 204 (367)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHhCCCCHH
Confidence 887664211 11225678888889998654
No 88
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.18 E-value=1.2e-05 Score=76.94 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=81.7
Q ss_pred HHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchh----hHHHHHHHH-hccCcEEEEEcCCCC
Q 048213 119 LNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESG----RARSLCNRL-KKEKMILVILDNIWE 193 (532)
Q Consensus 119 ~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~----~~~~l~~~l-~~~k~~LlVlDdv~~ 193 (532)
.+.+.++..+.+.+||++|+||||||+.+.+..+....|-.-......... ..+.-++.. ..++|..|.+|.|..
T Consensus 154 rs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 154 RSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred HHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 344446788999999999999999999999876654322111111111112 222222222 236889999999975
Q ss_pred c--ccccccccccCCCCCCeEEEE--eecChHHh--hhcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 194 N--LDFHAVGIPHGDDHKGCKVLL--TARSLDVL--SRKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 194 ~--~~~~~l~~~~~~~~~gs~ilv--Ttr~~~v~--~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
- .+-+.+ +|.-.+|.-++| ||.+...- ........++.|+.|+.++...++.+..
T Consensus 234 FNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 234 FNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 4 333333 444566775554 77776532 1123445689999999999999988743
No 89
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.16 E-value=6.7e-07 Score=91.78 Aligned_cols=146 Identities=29% Similarity=0.362 Sum_probs=118.7
Q ss_pred hHHhhhhcccccCCchhhhccc-cccEEEeccccccCc-ccccccccccEEeecccccccc-----ccCCcceEEecccc
Q 048213 371 RVVIDLTYMNLLSLPSSLGLLT-NLQTLCLYYCKLQDT-SVLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLR 443 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~~~~l~-~L~~L~l~~~~l~~~-~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~ 443 (532)
...+++.++.+..+|+....+. +|+.|++++|.+... ..+..+++|+.|++++|++..+ ..+.|+.|++++|+
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc
Confidence 4567888889999999888885 999999999999985 6899999999999999998887 46789999999998
Q ss_pred ccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCc
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPV 523 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~ 523 (532)
+ ...|.......+|++|.+++|.+...+... .++.++..|.+.+ +.+..+ +..+ +.+++|++|+++++.
T Consensus 198 i--~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~-----~~~~~l~~l~l~~-n~~~~~-~~~~-~~l~~l~~L~~s~n~- 266 (394)
T COG4886 198 I--SDLPPEIELLSALEELDLSNNSIIELLSSL-----SNLKNLSGLELSN-NKLEDL-PESI-GNLSNLETLDLSNNQ- 266 (394)
T ss_pred c--ccCchhhhhhhhhhhhhhcCCcceecchhh-----hhcccccccccCC-ceeeec-cchh-ccccccceecccccc-
Confidence 6 666666666677999999999766666666 6788898888764 556665 5555 789999999999763
Q ss_pred cccc
Q 048213 524 LKEI 527 (532)
Q Consensus 524 L~~i 527 (532)
++++
T Consensus 267 i~~i 270 (394)
T COG4886 267 ISSI 270 (394)
T ss_pred cccc
Confidence 4443
No 90
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=0.00032 Score=74.17 Aligned_cols=180 Identities=16% Similarity=0.092 Sum_probs=110.6
Q ss_pred ccccccchHHHHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHhhccC--------------------CCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKAENEK--------------------LFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~~~ 163 (532)
-..++|-+..++.|.+.+..+. ...+.++|+.|+||||+|+.+++..--.. |.|...++
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence 4567898888888888887665 46788899999999999999987653211 11121121
Q ss_pred cc--CchhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceEE
Q 048213 164 EE--SESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~~ 234 (532)
.. ...+.+..+.+.+. .+++-++|+|+++.. ..++.|...+..-.....+|++|.. ..+..........+.
T Consensus 95 ~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~ 174 (624)
T PRK14959 95 GASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFT 174 (624)
T ss_pred cccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccc
Confidence 11 11122333433332 246679999999765 3345554444322234555555544 444322223335789
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc-hHHHHHHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL-PVSIVTVARAL 285 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~~l 285 (532)
+.+++.++....+...+.... ..-..+.+..|++.++|. -.|+..+...+
T Consensus 175 F~pLs~~eL~~~L~~il~~eg-i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 175 FTRLSEAGLEAHLTKVLGREG-VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred cCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999988887654211 112356788899999995 46777766544
No 91
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.16 E-value=6e-05 Score=80.94 Aligned_cols=181 Identities=18% Similarity=0.185 Sum_probs=94.4
Q ss_pred ccccccchHHHHHHHHHhc-----CCCceEEEEEccCCCchHHHHHHHHHHhhcc---C---CCCEEEEec---cCc---
Q 048213 105 YEAFESRMSTFNDILNALK-----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENE---K---LFDRVIFVE---ESE--- 167 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~---~F~~~~~~~---~~~--- 167 (532)
+..+.||++++++|...|. .+...++.|+|++|.|||++++.|.+..... . .|..+.... ...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4568899999999998876 2233577899999999999999998765321 1 132222111 001
Q ss_pred -------------------hhhHHHHHHHHhc--cCcEEEEEcCCCCccc--ccccccccC-CCCCCeEEEE--eecChH
Q 048213 168 -------------------SGRARSLCNRLKK--EKMILVILDNIWENLD--FHAVGIPHG-DDHKGCKVLL--TARSLD 221 (532)
Q Consensus 168 -------------------~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~--~~~l~~~~~-~~~~gs~ilv--Ttr~~~ 221 (532)
......++..+.. +...+||||+++.... -+.|..-+. ....+++|++ .|....
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 1122333333321 2235899999985521 011110010 1123445443 333222
Q ss_pred Hh----hhcCC--CCceEEccCCCHHHHHHHHHHHhCCC---CCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 048213 222 VL----SRKMD--SQQDFWVGVLKEDEAWSLFKKMAGDY---IEGSEFKWVAKDVAKKCAGLPVSIVTVARAL 285 (532)
Q Consensus 222 v~----~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 285 (532)
.. ..... ....+...|.+.++-.+++...+... .....++-+|+.++...|-.-.||.++-.+.
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11 10100 11236679999999999999887521 1111122223333333344556665555444
No 92
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.14 E-value=2.7e-05 Score=77.28 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=83.1
Q ss_pred cccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccC-chhh-HHHHHHHHh-
Q 048213 104 DYEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEES-ESGR-ARSLCNRLK- 179 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~-~~~~-~~~l~~~l~- 179 (532)
.-..++|.++..+.+..++..+.. .++.++|++|+|||++|+.+++..... | ..+.... ..+. ...+.+...
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~--~--~~i~~~~~~~~~i~~~l~~~~~~ 94 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE--V--LFVNGSDCRIDFVRNRLTRFAST 94 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc--c--eEeccCcccHHHHHHHHHHHHHh
Confidence 356788999999999998886654 566669999999999999998865311 2 1111111 1111 111222211
Q ss_pred ---ccCcEEEEEcCCCCc---ccccccccccCCCCCCeEEEEeecChHHh-hhcCCCCceEEccCCCHHHHHHHHHH
Q 048213 180 ---KEKMILVILDNIWEN---LDFHAVGIPHGDDHKGCKVLLTARSLDVL-SRKMDSQQDFWVGVLKEDEAWSLFKK 249 (532)
Q Consensus 180 ---~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~ 249 (532)
.+.+-++|+||+... +..+.+...+.....++++|+||...... .........+.+...+.++..+++..
T Consensus 95 ~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 95 VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 124568999999755 11222322232234567888888754322 11122234677777788777766543
No 93
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.14 E-value=1.9e-05 Score=75.95 Aligned_cols=147 Identities=13% Similarity=0.047 Sum_probs=78.3
Q ss_pred cccccchHHHHHHHHH---hc------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccC----
Q 048213 106 EAFESRMSTFNDILNA---LK------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEES---- 166 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~---l~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~---- 166 (532)
..++|.+..+++|.+. .. .+....+.++|++|+||||+|+.+++.......-....+...+
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 4577877776665433 21 1234567899999999999999998764211100000000000
Q ss_pred ----chhhHHHHHHHHhccCcEEEEEcCCCCcc----------cccccccccCCCCCCeEEEEeecChHHh------hhc
Q 048213 167 ----ESGRARSLCNRLKKEKMILVILDNIWENL----------DFHAVGIPHGDDHKGCKVLLTARSLDVL------SRK 226 (532)
Q Consensus 167 ----~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~ilvTtr~~~v~------~~~ 226 (532)
..+....+.+.+......+|++|+++... ..+.+...+........+++++.....- ...
T Consensus 86 ~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L 165 (261)
T TIGR02881 86 VGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGL 165 (261)
T ss_pred hhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHH
Confidence 11112333333432234689999997532 2233333332333334555555432210 001
Q ss_pred -CCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 227 -MDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 227 -~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
......+.+++++.++-.+++.+.+.
T Consensus 166 ~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 166 RSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred HhccceEEEECCCCHHHHHHHHHHHHH
Confidence 11134688899999999999887764
No 94
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=2.4e-05 Score=82.12 Aligned_cols=178 Identities=16% Similarity=0.094 Sum_probs=106.9
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccC--------------------CCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEK--------------------LFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~~~ 163 (532)
-..++|++..++.+.+++..+.. +.+.++|+.|+||||+|+.+++...-.. +.|....+
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieId 94 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELD 94 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEec
Confidence 45788999999999998876544 5788999999999999999987643211 11211122
Q ss_pred ccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEE-eecChHHhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLL-TARSLDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-Ttr~~~v~~~~~~~~~~~~ 234 (532)
..+ ..+.++.+.+... .+++-++|+|+++.. ..++.+...+..-...+.+|+ |+....+..........+.
T Consensus 95 aas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ie 174 (605)
T PRK05896 95 AASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYN 174 (605)
T ss_pred cccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcc
Confidence 111 1112333333322 134457999999764 345555444332233455554 4444344322233345889
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchH-HHHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV-SIVTVAR 283 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 283 (532)
+.++++++....+...+.... ..-..+.+..+++.++|.+- |+..+-.
T Consensus 175 F~~Ls~~eL~~~L~~il~keg-i~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 175 FKKLNNSELQELLKSIAKKEK-IKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred cCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999999999988887654211 11125567889999999654 4444443
No 95
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.13 E-value=1.7e-05 Score=88.09 Aligned_cols=170 Identities=11% Similarity=0.075 Sum_probs=99.8
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCC----CCEEEE--ec-------cCch---
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKL----FDRVIF--VE-------ESES--- 168 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~~--~~-------~~~~--- 168 (532)
...++||+.++.++++.|......-+.++|++|+||||+|..+++....... .+..++ +. ....
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e 265 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFE 265 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHH
Confidence 4578999999999999988766677789999999999999999987532211 111111 00 0111
Q ss_pred hhHHHHHHHHh-ccCcEEEEEcCCCCcc-------ccc--ccccccCCCCCCeEEEEeecChHH----h--hhcCCCCce
Q 048213 169 GRARSLCNRLK-KEKMILVILDNIWENL-------DFH--AVGIPHGDDHKGCKVLLTARSLDV----L--SRKMDSQQD 232 (532)
Q Consensus 169 ~~~~~l~~~l~-~~k~~LlVlDdv~~~~-------~~~--~l~~~~~~~~~gs~ilvTtr~~~v----~--~~~~~~~~~ 232 (532)
.....+.+.+. .+++++|++|++.... .-+ .+..|....+ .-++|-||..... . .........
T Consensus 266 ~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e~~~~~~~d~AL~rRf~~ 344 (852)
T TIGR03345 266 NRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAEYKKYFEKDPALTRRFQV 344 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHHHhhhhhccHHHHHhCeE
Confidence 23333334333 2468999999987542 111 1222222222 2455555554321 0 111223458
Q ss_pred EEccCCCHHHHHHHHHHHhC--C-CCCCcchHHHHHHHHHHcCCch
Q 048213 233 FWVGVLKEDEAWSLFKKMAG--D-YIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~--~-~~~~~~~~~~~~~i~~~c~glP 275 (532)
+.+++++.++..+++..... . .....-..+....++..+.+..
T Consensus 345 i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 345 VKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 99999999999999765442 1 1111223556667777776543
No 96
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=6.8e-07 Score=87.43 Aligned_cols=156 Identities=22% Similarity=0.176 Sum_probs=105.0
Q ss_pred HHHHHhhHHhhhhcccccCCchh--hhccccccEEEeccccccC---cccccccccccEEeecccccccc------ccCC
Q 048213 365 MEVARARVVIDLTYMNLLSLPSS--LGLLTNLQTLCLYYCKLQD---TSVLGELKILEILRLRVNELTRA------GSSQ 433 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~~lp~~--~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~~------~l~~ 433 (532)
.+.+.....|+++.|.+....++ -..+++|+.|.+++|.+.. ......+|+|+.|.+.+|+.-.. -+..
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 34444456778888876442222 2367888999999998876 33456789999999999852211 4678
Q ss_pred cceEEeccccccCCCCCcccccCCCCCEEecCCcccccc--cccccccccccCCCccEEEeccCCCCCccchhhhhhcCC
Q 048213 434 LKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERI--WQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFV 511 (532)
Q Consensus 434 Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l--p~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~ 511 (532)
|+.|+|++|++.........+.|+.|+-|+++.|.|..+ |+.-...-.-.+++|++|++..+ ++..++...-+..++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLE 326 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccc
Confidence 999999999872233345678999999999999977753 33310001124699999999974 455553333235678
Q ss_pred CccEEEeecC
Q 048213 512 GLQCLEICEC 521 (532)
Q Consensus 512 ~L~~L~l~~c 521 (532)
+|+.|.+...
T Consensus 327 nlk~l~~~~n 336 (505)
T KOG3207|consen 327 NLKHLRITLN 336 (505)
T ss_pred hhhhhhcccc
Confidence 8888876543
No 97
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.12 E-value=1.9e-05 Score=74.27 Aligned_cols=179 Identities=20% Similarity=0.138 Sum_probs=115.1
Q ss_pred cccccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEec-----cCchhhHHHHH-
Q 048213 102 NKDYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVE-----ESESGRARSLC- 175 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~-----~~~~~~~~~l~- 175 (532)
+.....++|-+..+.-+.+.+.....+....+|++|.|||+-|..+++..--.+.|.+++... ....-...+++
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 344567889999999999999888889999999999999999999988776667788887211 11111111111
Q ss_pred -HHHhc---------cCc-EEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEEccCCCHH
Q 048213 176 -NRLKK---------EKM-ILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFWVGVLKED 241 (532)
Q Consensus 176 -~~l~~---------~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~l~~L~~~ 241 (532)
.++.. -+. -.+|||+++.. +.|.++...+......++.+..+.... +.......-.-+..++|.++
T Consensus 112 fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~ 191 (346)
T KOG0989|consen 112 FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDE 191 (346)
T ss_pred HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchH
Confidence 11110 122 37899999876 678888666655555566554444433 22111122235788899999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc-hHHHHHH
Q 048213 242 EAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL-PVSIVTV 281 (532)
Q Consensus 242 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 281 (532)
+...-+...+-.... .-..+..+.|++.++|- --|+.++
T Consensus 192 ~iv~rL~~Ia~~E~v-~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 192 DIVDRLEKIASKEGV-DIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 988888887752221 22256678889998884 3444433
No 98
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.10 E-value=2.3e-05 Score=86.37 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=87.5
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC---CC-CEEEEecc------------Cch
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK---LF-DRVIFVEE------------SES 168 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F-~~~~~~~~------------~~~ 168 (532)
...++||+++++++++.|......-+.++|++|+|||++|..+++...... .+ +..++... ...
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e 260 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFE 260 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHH
Confidence 357899999999999988866666788999999999999999998753221 01 11221100 111
Q ss_pred hhHHHHHHHHhccCcEEEEEcCCCCcc-----------cccccccccCCCCCCeEEEEeecChHH----h--hhcCCCCc
Q 048213 169 GRARSLCNRLKKEKMILVILDNIWENL-----------DFHAVGIPHGDDHKGCKVLLTARSLDV----L--SRKMDSQQ 231 (532)
Q Consensus 169 ~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~gs~ilvTtr~~~v----~--~~~~~~~~ 231 (532)
.....+.+.+...++.+|++|+++... .-+.++..+ ..+ .-++|-+|..... . ........
T Consensus 261 ~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l-~~g-~i~~IgaTt~~e~~~~~~~d~al~rRf~ 338 (731)
T TIGR02639 261 ERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL-SSG-KLRCIGSTTYEEYKNHFEKDRALSRRFQ 338 (731)
T ss_pred HHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH-hCC-CeEEEEecCHHHHHHHhhhhHHHHHhCc
Confidence 233444444443467999999987431 111222222 222 2344444443211 0 11112235
Q ss_pred eEEccCCCHHHHHHHHHHHh
Q 048213 232 DFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 232 ~~~l~~L~~~~~~~Lf~~~~ 251 (532)
.+.+++++.++..+++....
T Consensus 339 ~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 339 KIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred eEEeCCCCHHHHHHHHHHHH
Confidence 78999999999999998654
No 99
>PLN03150 hypothetical protein; Provisional
Probab=98.10 E-value=5.7e-06 Score=89.42 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=77.4
Q ss_pred ccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccccccCCCCCcccccCCCCCEEecC
Q 048213 394 LQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLS 465 (532)
Q Consensus 394 L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 465 (532)
+..|+|++|.+.. +..++++++|+.|+|++|.+.+. .+++|+.|+|++|++ ....|..++++++|++|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l-sg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF-NGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC-CCCCchHHhcCCCCCEEECc
Confidence 6677888887766 56788888888888888877643 677888888888877 66778888999999999999
Q ss_pred Ccccc-ccccccccccccc-CCCccEEEeccCCCCCcc
Q 048213 466 SINIE-RIWQNQVAAMSCG-IQNLKRLILFNCWNLTCL 501 (532)
Q Consensus 466 ~~~l~-~lp~~~~~~~~~~-L~~L~~L~L~~c~~l~~l 501 (532)
+|+++ .+|..+ .. +.++..+++.+++.+...
T Consensus 499 ~N~l~g~iP~~l-----~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 499 GNSLSGRVPAAL-----GGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCcccccCChHH-----hhccccCceEEecCCccccCC
Confidence 99776 566654 32 346778888876655544
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.09 E-value=5.7e-05 Score=71.08 Aligned_cols=168 Identities=10% Similarity=0.010 Sum_probs=93.8
Q ss_pred cchHHH-HHHHHHhc-CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhccCcEEEE
Q 048213 110 SRMSTF-NDILNALK-SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKKEKMILVI 187 (532)
Q Consensus 110 gR~~~~-~~i~~~l~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~LlV 187 (532)
|..... ..+.++.. ....+.+.|+|..|+|||+||..+++....+ .....+........ .+ .... ..-+||
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~~~~~i~~~~~~~---~~-~~~~--~~~~li 95 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GRNARYLDAASPLL---AF-DFDP--EAELYA 95 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEehHHhHH---HH-hhcc--cCCEEE
Confidence 443333 33334333 2345688999999999999999999875332 23333322222111 11 1122 335799
Q ss_pred EcCCCCccccc--ccccccCC-CCCCe-EEEEeecChHHhhh-------cCCCCceEEccCCCHHHHHHHHHHHhCCCCC
Q 048213 188 LDNIWENLDFH--AVGIPHGD-DHKGC-KVLLTARSLDVLSR-------KMDSQQDFWVGVLKEDEAWSLFKKMAGDYIE 256 (532)
Q Consensus 188 lDdv~~~~~~~--~l~~~~~~-~~~gs-~ilvTtr~~~v~~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 256 (532)
+||+.....+. .+...+.. ...+. .+|+|++....... .......+.+.++++++-..++.+.+....
T Consensus 96 iDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~- 174 (227)
T PRK08903 96 VDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG- 174 (227)
T ss_pred EeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-
Confidence 99997543222 22222211 12333 36666664332110 112236889999999887777766443111
Q ss_pred CcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 048213 257 GSEFKWVAKDVAKKCAGLPVSIVTVARAL 285 (532)
Q Consensus 257 ~~~~~~~~~~i~~~c~glPLai~~~~~~l 285 (532)
..--++....+++.+.|.+..+..+-..+
T Consensus 175 v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 175 LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22235678888888999998877666554
No 101
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=8.6e-05 Score=81.75 Aligned_cols=173 Identities=14% Similarity=0.087 Sum_probs=108.2
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhcc----------------------CCCCEEE
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAENE----------------------KLFDRVI 161 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~----------------------~~F~~~~ 161 (532)
-..++|.+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++...-. .+++...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e 93 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTE 93 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence 457889999999999998876654 57899999999999999998875321 1223222
Q ss_pred EeccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEee-cChHHhhhcCCCCce
Q 048213 162 FVEES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTA-RSLDVLSRKMDSQQD 232 (532)
Q Consensus 162 ~~~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTt-r~~~v~~~~~~~~~~ 232 (532)
++..+ ..+.+..+.+.+. .++.-++|||+++.. ..++.|...+..-...+.+|++| ....+..........
T Consensus 94 idaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~ 173 (824)
T PRK07764 94 IDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHH 173 (824)
T ss_pred ecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeE
Confidence 22211 1222333433322 245568899999865 34555544444334455555544 444444333334568
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 233 FWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
|.+..++.++..+.+.+.+.... ..-..+....|++.++|-+..+
T Consensus 174 v~F~~l~~~~l~~~L~~il~~EG-v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 174 YPFRLVPPEVMRGYLERICAQEG-VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 99999999998888877653211 1122455678899999977433
No 102
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=4.8e-05 Score=79.67 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=104.5
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhcc-------------------CCCCEEE-Ee
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAENE-------------------KLFDRVI-FV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~-~~ 163 (532)
-..++|-+..++.|.+++..+... .+.++|+.|+||||+|+.+++..--. +.|...+ .+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 457889999999999999876654 56899999999999999998864321 1122222 22
Q ss_pred ccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~~ 234 (532)
..+ ..+....+.+.+. .++.-++|+|+++.. ...+.+...+..-...+++|++|.+ ..+..........+.
T Consensus 95 aas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~ 174 (509)
T PRK14958 95 AASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFH 174 (509)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhh
Confidence 111 1112222333222 246678999999865 3455554444333345666655543 333322222335788
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
+.+++.++....+...+.... ..-..+....|++.++|-+.-+
T Consensus 175 f~~l~~~~i~~~l~~il~~eg-i~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 175 LAQLPPLQIAAHCQHLLKEEN-VEFENAALDLLARAANGSVRDA 217 (509)
T ss_pred cCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHH
Confidence 999999887776665543111 1122455778888999877544
No 103
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.1e-07 Score=84.66 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=37.7
Q ss_pred ccCCCCCEEecCCc-ccccccccccccccccCCCccEEEeccCCCCCccchhhh--hhcCCCccEEEeecCC
Q 048213 454 VALPKLETVCLSSI-NIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSI--ISSFVGLQCLEICECP 522 (532)
Q Consensus 454 ~~l~~L~~L~L~~~-~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~--~~~L~~L~~L~l~~c~ 522 (532)
...|+|..|||+.| .++. ..+ ...++++.|++|.|+.|+.+. |..+ ++..|+|.||++-+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~--~~~--~~~~kf~~L~~lSlsRCY~i~---p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKN--DCF--QEFFKFNYLQHLSLSRCYDII---PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCc--hHH--HHHHhcchheeeehhhhcCCC---hHHeeeeccCcceEEEEecccc
Confidence 34577777888777 3331 111 111567788888888887643 3322 2567788888887773
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=4.8e-05 Score=80.19 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=106.0
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhcc-------------------CCCCEEE-Ee
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAENE-------------------KLFDRVI-FV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~-~~ 163 (532)
-..++|-+..++.+.+++..+... .+.++|+.|+||||+|+.+++..--. +.|...+ .+
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 456889999999999988876654 56899999999999999998764321 1121221 11
Q ss_pred cc--CchhhHHHHHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceEE
Q 048213 164 EE--SESGRARSLCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~~ 234 (532)
.. ...+.+..+.+... .+++-++|+|+++... ..+.+...+..-...+.+|++|.+ ..+..........+.
T Consensus 95 ~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~ 174 (527)
T PRK14969 95 AASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFN 174 (527)
T ss_pred ccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHh
Confidence 11 11122233333332 2466799999998653 344444444333345555555544 333211112235788
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchH-HHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV-SIVTV 281 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 281 (532)
+.+++.++..+.+.+.+.... ....++....|++.++|.+- |+..+
T Consensus 175 f~~l~~~~i~~~L~~il~~eg-i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 175 LKQMPPPLIVSHLQHILEQEN-IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred cCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999998888877653111 12235567889999999764 44443
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=98.06 E-value=0.00011 Score=69.25 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=88.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhccCcEEEEEcCCCCc---ccccc-ccc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKKEKMILVILDNIWEN---LDFHA-VGI 202 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~-l~~ 202 (532)
...+.|+|..|+|||.|++++++....+. -................+.+.+.+ - =+||+||+... ..|+. +..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~-~~v~y~~~~~~~~~~~~~~~~~~~-~-d~LiiDDi~~~~~~~~~~~~Lf~ 121 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG-EPAVYLPLAELLDRGPELLDNLEQ-Y-ELVCLDDLDVIAGKADWEEALFH 121 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEeeHHHHHhhhHHHHHhhhh-C-CEEEEechhhhcCChHHHHHHHH
Confidence 36789999999999999999987654322 222222221111112344444542 2 26889999743 34443 222
Q ss_pred ccCC-CCCCeEEEEeecChHHhhhc--------CCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 048213 203 PHGD-DHKGCKVLLTARSLDVLSRK--------MDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAG 273 (532)
Q Consensus 203 ~~~~-~~~gs~ilvTtr~~~v~~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g 273 (532)
.+.. ..+|..+|+|++.....-.. .....++.+++++.++-.+++.+++.... ..--+++..-|++.+.|
T Consensus 122 l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~l~~ev~~~L~~~~~~ 200 (234)
T PRK05642 122 LFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LHLTDEVGHFILTRGTR 200 (234)
T ss_pred HHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCC
Confidence 2211 13466788888764432101 12235788999999999999986654221 12225777788888877
Q ss_pred chHHHHHHH
Q 048213 274 LPVSIVTVA 282 (532)
Q Consensus 274 lPLai~~~~ 282 (532)
-.-++..+-
T Consensus 201 d~r~l~~~l 209 (234)
T PRK05642 201 SMSALFDLL 209 (234)
T ss_pred CHHHHHHHH
Confidence 655544443
No 106
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.05 E-value=7.2e-05 Score=72.64 Aligned_cols=124 Identities=15% Similarity=0.005 Sum_probs=67.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhh--------HHHHHHHHhccCcEEEEEcCCCCc------
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGR--------ARSLCNRLKKEKMILVILDNIWEN------ 194 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~--------~~~l~~~l~~~k~~LlVlDdv~~~------ 194 (532)
-+.++|++|+|||++|+.++.............+...+..+. ...+.+.+.....-+|+||++...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~ 139 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNE 139 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCc
Confidence 588999999999999988776543221111000111000111 122233333224468999999732
Q ss_pred -----ccccccccccCCCCCCeEEEEeecChHHhhhc-------CCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 195 -----LDFHAVGIPHGDDHKGCKVLLTARSLDVLSRK-------MDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 195 -----~~~~~l~~~~~~~~~gs~ilvTtr~~~v~~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
+.++.+...+.....+.+||+++.....-... ......+.+++++.+|-.+++...+-
T Consensus 140 ~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 140 RDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred cchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 11233333333334566777776543221100 11135789999999999999887764
No 107
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.05 E-value=8.5e-05 Score=75.31 Aligned_cols=168 Identities=16% Similarity=0.199 Sum_probs=96.1
Q ss_pred ccccccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eec--
Q 048213 103 KDYEAFESRMSTFNDILNALK----S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVE-- 164 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~-- 164 (532)
.....+.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+++++..... |-... +..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--fi~i~~s~l~~k~ 219 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--FIRVVGSEFVQKY 219 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--EEEEehHHHHHHh
Confidence 334567788888877776553 1 245789999999999999999999875433 32221 000
Q ss_pred -cCchhhHHHHHHHHhccCcEEEEEcCCCCcc------------c----ccccccccC--CCCCCeEEEEeecChHHhh-
Q 048213 165 -ESESGRARSLCNRLKKEKMILVILDNIWENL------------D----FHAVGIPHG--DDHKGCKVLLTARSLDVLS- 224 (532)
Q Consensus 165 -~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~gs~ilvTtr~~~v~~- 224 (532)
.........+..........+|++|+++... . +..+...+. ....+..||.||.......
T Consensus 220 ~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 220 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence 0111223334444444578999999987421 0 111111111 1124567888887655432
Q ss_pred hcCC---CCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 225 RKMD---SQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 225 ~~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
.... -...+.+...+.++..++|..+........+. ...++++.+.|+
T Consensus 300 AllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~ 350 (398)
T PTZ00454 300 ALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKI 350 (398)
T ss_pred HHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCC
Confidence 1222 23468888888888888888766432211111 134566666555
No 108
>CHL00181 cbbX CbbX; Provisional
Probab=98.04 E-value=9.2e-05 Score=71.87 Aligned_cols=125 Identities=13% Similarity=0.001 Sum_probs=68.5
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhh--------HHHHHHHHhccCcEEEEEcCCCCc-----
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGR--------ARSLCNRLKKEKMILVILDNIWEN----- 194 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~--------~~~l~~~l~~~k~~LlVlDdv~~~----- 194 (532)
..+.++|++|+||||+|+.+++.......-...-+...+..+. .......+.....-+|++|++...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~ 139 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN 139 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCC
Confidence 4578999999999999999987643211110000111111111 112223333223469999999752
Q ss_pred ------ccccccccccCCCCCCeEEEEeecChHHhh-------hcCCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 195 ------LDFHAVGIPHGDDHKGCKVLLTARSLDVLS-------RKMDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 195 ------~~~~~l~~~~~~~~~gs~ilvTtr~~~v~~-------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
+..+.+...+.....+.+||+++....... -.......+..++++.++..+++...+.
T Consensus 140 ~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 140 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred ccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 112223333333344567777775433210 0112235788999999999988887764
No 109
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00015 Score=77.71 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=110.2
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhh---------------------ccCCCCEEEE
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAE---------------------NEKLFDRVIF 162 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~~~~~ 162 (532)
-..++|.+..++.|.+++..+... .+.++|+.|+||||+|+.++.... ...+|+...+
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~l 95 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHEL 95 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEe
Confidence 457889999999999999876654 578999999999999999887542 1234555544
Q ss_pred eccCc--hhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEE-eecChHHhhhcCCCCceE
Q 048213 163 VEESE--SGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLL-TARSLDVLSRKMDSQQDF 233 (532)
Q Consensus 163 ~~~~~--~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-Ttr~~~v~~~~~~~~~~~ 233 (532)
+..+. .+.+..+.+.+. .+++-++|+|++... ..++.+...+..-..++.+|+ |+....+.........++
T Consensus 96 d~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv 175 (614)
T PRK14971 96 DAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIF 175 (614)
T ss_pred cccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhhee
Confidence 33221 122333333222 245568899998765 345555444433334555554 544444443333445689
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 234 WVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
++.+++.++....+.+.+.... ..-..+.+..|+..++|-.--+
T Consensus 176 ~f~~ls~~ei~~~L~~ia~~eg-i~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 176 DFNRIQVADIVNHLQYVASKEG-ITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred ecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 9999999999988887664221 1222456788999999966433
No 110
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00018 Score=74.48 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=107.5
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc---------------------CCCCEEEE
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE---------------------KLFDRVIF 162 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~~~~~ 162 (532)
-..++|.+..++.+.+++..+.. ..+.++|+.|+||||+|..+++..--. .+++...+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i 95 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEI 95 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEe
Confidence 45788999999999999887665 567899999999999999998754321 12332223
Q ss_pred eccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceE
Q 048213 163 VEES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDF 233 (532)
Q Consensus 163 ~~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~ 233 (532)
+..+ ..+.+..+.+.+. .+++-++|+|+++.. ...+.+...+..-..++.+|++|.. ..+..........+
T Consensus 96 ~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v 175 (451)
T PRK06305 96 DGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKM 175 (451)
T ss_pred eccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEE
Confidence 2211 1223334444443 145678999998754 2334443333332335556655543 33322222334578
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch-HHHHHH
Q 048213 234 WVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP-VSIVTV 281 (532)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 281 (532)
.+.++++++....+.+.+.... ..-..+.+..|+..++|.+ .|+..+
T Consensus 176 ~f~~l~~~el~~~L~~~~~~eg-~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 176 HLKRIPEETIIDKLALIAKQEG-IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999998888877653211 1123567888999999965 444443
No 111
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.01 E-value=0.0001 Score=75.36 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=94.8
Q ss_pred cccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEec------cC
Q 048213 106 EAFESRMSTFNDILNALK----S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVE------ES 166 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~------~~ 166 (532)
..+.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+++++..... |-...... ..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--fi~V~~seL~~k~~Ge 260 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--FLRVVGSELIQKYLGD 260 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--EEEEecchhhhhhcch
Confidence 456788888888877663 1 234678899999999999999999975432 42221000 00
Q ss_pred chhhHHHHHHHHhccCcEEEEEcCCCCccc----------------ccccccccC--CCCCCeEEEEeecChHHhhhc-C
Q 048213 167 ESGRARSLCNRLKKEKMILVILDNIWENLD----------------FHAVGIPHG--DDHKGCKVLLTARSLDVLSRK-M 227 (532)
Q Consensus 167 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtr~~~v~~~~-~ 227 (532)
.......+.+......+.+|+||+++.... +..+...+. ....+.+||.||......... .
T Consensus 261 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLl 340 (438)
T PTZ00361 261 GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALI 340 (438)
T ss_pred HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhc
Confidence 111233333333345778999999864210 001111111 112356788888866554221 2
Q ss_pred ---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 228 ---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 228 ---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
.....+.+...+.++..++|..+........+. ....++..+.|+
T Consensus 341 RpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~ 388 (438)
T PTZ00361 341 RPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDEL 388 (438)
T ss_pred cCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCC
Confidence 123478899999999999999876532211111 134555555554
No 112
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00028 Score=68.07 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=118.5
Q ss_pred cccccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eec-
Q 048213 102 NKDYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVE- 164 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~- 164 (532)
...+..+-|-++.+++|.+... =..++-|.+||++|.|||-||++|+++.... |=..+ +.+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--FIrvvgSElVqK 224 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--FIRVVGSELVQK 224 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--EEEeccHHHHHH
Confidence 4446667888888888888764 1356889999999999999999999987655 54443 111
Q ss_pred --cCchhhHHHHHHHHhccCcEEEEEcCCCCcc------------c----ccccccccCC--CCCCeEEEEeecChHHh-
Q 048213 165 --ESESGRARSLCNRLKKEKMILVILDNIWENL------------D----FHAVGIPHGD--DHKGCKVLLTARSLDVL- 223 (532)
Q Consensus 165 --~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~--~~~gs~ilvTtr~~~v~- 223 (532)
.........+++.-+....+.|.+|.++... . .-++...+.. ....-|||..|...+++
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILD 304 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccC
Confidence 1222345556666666789999999997431 0 0011111111 13457899888877665
Q ss_pred hhcCCC---CceEEccCCCHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHHcCCch----HHHHHHHHHHc---cC---
Q 048213 224 SRKMDS---QQDFWVGVLKEDEAWSLFKKMAGD--YIEGSEFKWVAKDVAKKCAGLP----VSIVTVARALR---NK--- 288 (532)
Q Consensus 224 ~~~~~~---~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~glP----Lai~~~~~~l~---~~--- 288 (532)
...... ...+++..-+.+.-.++|.-++.. ....-+ .+.+++.|.|.- -|+.+=|++++ .+
T Consensus 305 PALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~V 380 (406)
T COG1222 305 PALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAICTEAGMFAIRERRDEV 380 (406)
T ss_pred hhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCee
Confidence 222222 246777766666667788877762 222223 345666676653 55666677665 12
Q ss_pred ChHHHHHHHHHh
Q 048213 289 RLFDWKDALEQL 300 (532)
Q Consensus 289 ~~~~w~~~l~~~ 300 (532)
+.+.+..+.+..
T Consensus 381 t~~DF~~Av~KV 392 (406)
T COG1222 381 TMEDFLKAVEKV 392 (406)
T ss_pred cHHHHHHHHHHH
Confidence 555555555443
No 113
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00026 Score=75.02 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=108.6
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhcc----------------------CCCCEEE
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAENE----------------------KLFDRVI 161 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~----------------------~~F~~~~ 161 (532)
-..++|.+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++...-. .+.+...
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvie 91 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVE 91 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEE
Confidence 457889999999999999877655 46899999999999999998754311 1222222
Q ss_pred EeccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEE-EeecChHHhhhcCCCCce
Q 048213 162 FVEES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVL-LTARSLDVLSRKMDSQQD 232 (532)
Q Consensus 162 ~~~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTtr~~~v~~~~~~~~~~ 232 (532)
.+..+ ..+.+..+.+.+. .+++-++|+|++... ...+.|...+..-...+.+| +||....+..........
T Consensus 92 idaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~ 171 (584)
T PRK14952 92 LDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHH 171 (584)
T ss_pred eccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceE
Confidence 22211 1223333433332 245668999998754 34555544444333455555 454444444322333568
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchH-HHHHH
Q 048213 233 FWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV-SIVTV 281 (532)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 281 (532)
+.+.+++.++..+.+.+.+.... ..-..+....|++.++|-+- |+..+
T Consensus 172 ~~F~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 172 YPFRLLPPRTMRALIARICEQEG-VVVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred EEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999998888877654211 11224566788888888764 44443
No 114
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.99 E-value=5.2e-05 Score=84.66 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=85.2
Q ss_pred cccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC------CCCEEEEec----------cCchh
Q 048213 106 EAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK------LFDRVIFVE----------ESESG 169 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~~~~----------~~~~~ 169 (532)
..++||+++++++++.|......-+.++|++|+|||++|..++......+ .......+. .....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~ 258 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEE 258 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHH
Confidence 46899999999999999866666778999999999999999988753210 011111110 01112
Q ss_pred hHHHHHHHHhccCcEEEEEcCCCCcc---------cccccccccCCCCCCeEEEEeecChHHh------hhcCCCCceEE
Q 048213 170 RARSLCNRLKKEKMILVILDNIWENL---------DFHAVGIPHGDDHKGCKVLLTARSLDVL------SRKMDSQQDFW 234 (532)
Q Consensus 170 ~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~ilvTtr~~~v~------~~~~~~~~~~~ 234 (532)
....+.+.+...++.+|++|+++... +...+..+....+ .-++|.+|...... .........+.
T Consensus 259 rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~ 337 (821)
T CHL00095 259 RLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEKDPALERRFQPVY 337 (821)
T ss_pred HHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhcCHHHHhcceEEe
Confidence 33344444444567999999996331 1111222222222 23455544443321 11122334678
Q ss_pred ccCCCHHHHHHHHHHH
Q 048213 235 VGVLKEDEAWSLFKKM 250 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~ 250 (532)
+...+.++..+++...
T Consensus 338 v~ep~~~e~~aILr~l 353 (821)
T CHL00095 338 VGEPSVEETIEILFGL 353 (821)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 8888999988887653
No 115
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00015 Score=77.27 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=109.2
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccCC-------------------------CC
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEKL-------------------------FD 158 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------------F~ 158 (532)
-..++|.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++..--... -|
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~D 102 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVD 102 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCc
Confidence 45789999999999999887664 46889999999999999999886432211 11
Q ss_pred EEEEeccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEee-cChHHhhhcCCC
Q 048213 159 RVIFVEES--ESGRARSLCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTA-RSLDVLSRKMDS 229 (532)
Q Consensus 159 ~~~~~~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-r~~~v~~~~~~~ 229 (532)
...++..+ ..+.+..+.+.+. .+++-++|+|++.... ..+.+...+..-..++.+|++| ....+.......
T Consensus 103 v~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SR 182 (598)
T PRK09111 103 VLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSR 182 (598)
T ss_pred eEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhh
Confidence 11111111 1122333333332 2355689999997653 3455544443333456665544 444444322333
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 230 QQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 230 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
...+.+..++.++....+.+.+.... ..-..+....|++.++|.+.-+...
T Consensus 183 cq~~~f~~l~~~el~~~L~~i~~keg-i~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 183 CQRFDLRRIEADVLAAHLSRIAAKEG-VEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45889999999999988888764211 1122466788899999988655443
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00022 Score=74.44 Aligned_cols=176 Identities=16% Similarity=0.132 Sum_probs=107.3
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhcc--------------------CCCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAENE--------------------KLFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~~ 163 (532)
-..++|-+..++.+...+..+... ...++|+.|+||||+|+.+++..--. .|++..-.+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 457889999999999988877655 56899999999999999888764211 122222122
Q ss_pred ccCc--hhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecCh-HHhhhcCCCCceEE
Q 048213 164 EESE--SGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSL-DVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~~--~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~v~~~~~~~~~~~~ 234 (532)
..+. .+.+..+.+... .+++-++|+|++... +..+.+...+-.-...+++|++|.+. .+..........++
T Consensus 93 aas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~ 172 (535)
T PRK08451 93 AASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFR 172 (535)
T ss_pred cccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEE
Confidence 2111 122222222221 145668999999765 33445544443334456666666553 22221222346889
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
+.+++.++....+.+.+.... ..-.++.+..|++.++|.+--+...
T Consensus 173 F~~Ls~~ei~~~L~~Il~~EG-i~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 173 FKQIPQNSIISHLKTILEKEG-VSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred cCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999888877654211 1223567889999999988544333
No 117
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00027 Score=75.85 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=108.8
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccC---------------------CCCEEEE
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEK---------------------LFDRVIF 162 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------------------~F~~~~~ 162 (532)
-..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++...... +.+...+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i 94 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEM 94 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEE
Confidence 45788999999999888886654 4568999999999999999987643211 1121111
Q ss_pred ecc--CchhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceE
Q 048213 163 VEE--SESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDF 233 (532)
Q Consensus 163 ~~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~ 233 (532)
+.. ...+.+..+.+.+. .+++-++|+|++... +..+.+...+..-...+.+|++|.+ ..+..........+
T Consensus 95 ~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i 174 (585)
T PRK14950 95 DAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRF 174 (585)
T ss_pred eccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhcccee
Confidence 111 11222334444333 145678999998754 3355554444333345666665544 33332222334578
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 048213 234 WVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVA 282 (532)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 282 (532)
.+..++.++....+.+.+..... .-..+.+..|+..++|.+..+...-
T Consensus 175 ~f~~l~~~el~~~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 175 DFHRHSVADMAAHLRKIAAAEGI-NLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999988888877642111 1225678899999999886554433
No 118
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.95 E-value=6e-05 Score=76.71 Aligned_cols=135 Identities=19% Similarity=0.097 Sum_probs=84.4
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhcc---CCCCEEEEeccCchhhHHHHHHHHhccCcEEE
Q 048213 110 SRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENE---KLFDRVIFVEESESGRARSLCNRLKKEKMILV 186 (532)
Q Consensus 110 gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~Ll 186 (532)
.|.....++++.+..... ++.|.|+-++||||+++.+....... -.|+..........+....+.+.-. .++..|
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~-~~~~yi 98 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKE-REKSYI 98 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhc-cCCceE
Confidence 344556666666654443 99999999999999997666543222 0111111111111111122222212 256899
Q ss_pred EEcCCCCcccccccccccCCCCCCeEEEEeecChHHh-----hhcCCCCceEEccCCCHHHHHHHH
Q 048213 187 ILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDVL-----SRKMDSQQDFWVGVLKEDEAWSLF 247 (532)
Q Consensus 187 VlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v~-----~~~~~~~~~~~l~~L~~~~~~~Lf 247 (532)
+||.|.....|......+.+.++. +|++|+-+.... ....+....+.+.||+..|...+-
T Consensus 99 fLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 99 FLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred EEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999999999987777776666 788888776554 222344568899999988887653
No 119
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=3.3e-07 Score=94.72 Aligned_cols=117 Identities=24% Similarity=0.188 Sum_probs=83.9
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc------ccCCcceEEeccccccC
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRASA 446 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~~ 446 (532)
+.++++|.+..+-.++.-++.|+.|+|++|++.+...+..|++|.+|||+.|.+..+ ++. |..|.|+||..
T Consensus 168 ~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l-- 244 (1096)
T KOG1859|consen 168 TASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL-- 244 (1096)
T ss_pred hhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHH--
Confidence 557777888778888999999999999999999988999999999999999987766 333 77777777733
Q ss_pred CCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCC
Q 048213 447 PNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 447 ~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
.....+.+|.+|+.||++.|-|...-+-. +...|..|..|.|.|++
T Consensus 245 -~tL~gie~LksL~~LDlsyNll~~hseL~---pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 245 -TTLRGIENLKSLYGLDLSYNLLSEHSELE---PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -HhhhhHHhhhhhhccchhHhhhhcchhhh---HHHHHHHHHHHhhcCCc
Confidence 33445667777777777777443321111 00234567777777754
No 120
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.0002 Score=76.89 Aligned_cols=176 Identities=20% Similarity=0.144 Sum_probs=107.4
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc-----------------CCCCEEEEeccC
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE-----------------KLFDRVIFVEES 166 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------------~~F~~~~~~~~~ 166 (532)
-..++|.+..++.+.+++..+.+ ..+.++|+.|+||||+|+.+++..--. .+++..-.+..+
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaas 96 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAAS 96 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccc
Confidence 45688999999999999986654 556799999999999999998753211 112211121111
Q ss_pred --chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeE-EEEeecChHHhhhcCCCCceEEccC
Q 048213 167 --ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCK-VLLTARSLDVLSRKMDSQQDFWVGV 237 (532)
Q Consensus 167 --~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~-ilvTtr~~~v~~~~~~~~~~~~l~~ 237 (532)
..+.++.+.+.+. .+++-++|+|++... ..++.+...+-.-...+. |++|++...+..........+.+.+
T Consensus 97 n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~ 176 (725)
T PRK07133 97 NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRR 176 (725)
T ss_pred cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccC
Confidence 1222444444443 246678999998754 345555443322223444 4455555555433333346899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchH-HHHHH
Q 048213 238 LKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV-SIVTV 281 (532)
Q Consensus 238 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 281 (532)
++.++....+...+.... ..-..+.+..|++.++|-+- |+..+
T Consensus 177 L~~eeI~~~L~~il~keg-I~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 177 ISEDEIVSRLEFILEKEN-ISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred CCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999888877543111 11224567889999988664 44433
No 121
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00047 Score=73.10 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=108.9
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc--------------------CCCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE--------------------KLFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~~ 163 (532)
-..++|-+..++.+..++..+.. ..+.++|+.|+||||+|+.+++..--. .+++...++
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~id 94 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEID 94 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEec
Confidence 45788999999999999986654 457899999999999999998864321 134433232
Q ss_pred ccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~~ 234 (532)
..+ ..+.+..+.+.+. .+++-++|+|++.... .++.+...+..-...+.+|.+|.. ..+..........+.
T Consensus 95 gas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~ 174 (563)
T PRK06647 95 GASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFN 174 (563)
T ss_pred CcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEE
Confidence 211 1122333333222 2466689999987653 455554444333345555555543 333322233345789
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVT 280 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 280 (532)
..+++.++....+.+.+.... ..-.++.+..|++.++|.+-.+..
T Consensus 175 f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 175 FRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred ecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999998888887664211 122356678889999997754433
No 122
>PTZ00202 tuzin; Provisional
Probab=97.89 E-value=7.6e-05 Score=74.35 Aligned_cols=146 Identities=13% Similarity=0.142 Sum_probs=85.0
Q ss_pred ccccccccccccchHHHHHHHHHhcC---CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE--------------
Q 048213 99 LLSNKDYEAFESRMSTFNDILNALKS---PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-------------- 161 (532)
Q Consensus 99 ~~~~~~~~~~~gR~~~~~~i~~~l~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-------------- 161 (532)
++.+.+...|+||+.++..+...|.+ +..+++.|.|++|+|||||++.+..... +...+
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNprg~eElLr~LL 330 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVRGTEDTLRSVV 330 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCCCHHHHHHHHH
Confidence 44566788999999999999998862 2346899999999999999999986543 33332
Q ss_pred --Eec---cCchhhHHHHHHHHh----c-cCcEEEEEcCCCCccccccc---ccccCCCCCCeEEEEeecChHHh--hhc
Q 048213 162 --FVE---ESESGRARSLCNRLK----K-EKMILVILDNIWENLDFHAV---GIPHGDDHKGCKVLLTARSLDVL--SRK 226 (532)
Q Consensus 162 --~~~---~~~~~~~~~l~~~l~----~-~k~~LlVlDdv~~~~~~~~l---~~~~~~~~~gs~ilvTtr~~~v~--~~~ 226 (532)
+.. ....+....|.+.+. . +++.+||+-== +.+.+..+ ...+.+...-|.|++----+... ...
T Consensus 331 ~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 331 KALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred HHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhccc
Confidence 111 111234445555443 2 56666665421 11111111 12233334446666544433321 222
Q ss_pred CCCCceEEccCCCHHHHHHHHHH
Q 048213 227 MDSQQDFWVGVLKEDEAWSLFKK 249 (532)
Q Consensus 227 ~~~~~~~~l~~L~~~~~~~Lf~~ 249 (532)
.+.-.-|.+.+++.++|.+.-..
T Consensus 410 lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 410 LPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred CccceeEecCCCCHHHHHHHHhh
Confidence 33445788888998888765443
No 123
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.87 E-value=0.00019 Score=75.71 Aligned_cols=175 Identities=18% Similarity=0.184 Sum_probs=96.0
Q ss_pred cccccccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eec--
Q 048213 102 NKDYEAFESRMSTFNDILNALK---S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVE-- 164 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~-- 164 (532)
...-..+.|-++.++++.+.+. . ...+-+.++|++|+|||++|+.+++..... |-..- +..
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--~~~i~~~~~~~~~ 128 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--FFSISGSDFVEMF 128 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--eeeccHHHHHHHH
Confidence 3445567787777666554432 1 224568899999999999999999876443 21110 000
Q ss_pred -cCchhhHHHHHHHHhccCcEEEEEcCCCCcc------------cc----cccccccC--CCCCCeEEEEeecChHHhh-
Q 048213 165 -ESESGRARSLCNRLKKEKMILVILDNIWENL------------DF----HAVGIPHG--DDHKGCKVLLTARSLDVLS- 224 (532)
Q Consensus 165 -~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~----~~l~~~~~--~~~~gs~ilvTtr~~~v~~- 224 (532)
.........+.+.......++|++||++... .+ ..+...+. ....+..||.||.......
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~ 208 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDP 208 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCH
Confidence 0011223334444333466899999996531 01 11111111 1223455667776654221
Q ss_pred hcC---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc-hHHHHH
Q 048213 225 RKM---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL-PVSIVT 280 (532)
Q Consensus 225 ~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~ 280 (532)
... .-...+.+...+.++-.++|..+........ ......++..+.|. +-.|..
T Consensus 209 al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 209 ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCCHHHHHH
Confidence 111 2235788888898888899888765322211 12245777777774 333433
No 124
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.87 E-value=1.4e-05 Score=72.41 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=34.9
Q ss_pred ccccchHHHHHHHHHhc---CCCceEEEEEccCCCchHHHHHHHHHHhhccCCC
Q 048213 107 AFESRMSTFNDILNALK---SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLF 157 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 157 (532)
.|+||+++++++...+. ....+.+.|+|.+|+|||+|.++++........+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~ 54 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY 54 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 48999999999999993 5567999999999999999999999887766333
No 125
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=5.6e-06 Score=89.39 Aligned_cols=124 Identities=17% Similarity=0.128 Sum_probs=87.1
Q ss_pred cccccEEEeccccccC---cccc-cccccccEEeecccccccc-------ccCCcceEEeccccccCCCCCcccccCCCC
Q 048213 391 LTNLQTLCLYYCKLQD---TSVL-GELKILEILRLRVNELTRA-------GSSQLKHLSVRGLRASAPNPTESEVALPKL 459 (532)
Q Consensus 391 l~~L~~L~l~~~~l~~---~~~i-~~l~~L~~L~l~~~~l~~~-------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L 459 (532)
-.+|++|++++...-. +..+ .-||.|++|.+.+-.+..- ++|+|+.|++++++. .+ ..++++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI--~n-l~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI--SN-LSGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc--cC-cHHHhccccH
Confidence 4688999998854222 3333 4689999999988655433 899999999999976 33 3778899999
Q ss_pred CEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchh------hhhhcCCCccEEEeecCC
Q 048213 460 ETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTS------SIISSFVGLQCLEICECP 522 (532)
Q Consensus 460 ~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~------~~~~~L~~L~~L~l~~c~ 522 (532)
+.|.+.+-.+..-++-. ..|+|++|++||+|.-.+.. - +. .....||+|+.|+.|++.
T Consensus 198 q~L~mrnLe~e~~~~l~---~LF~L~~L~vLDIS~~~~~~-~-~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLI---DLFNLKKLRVLDISRDKNND-D-TKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccCCCCCchhhHH---HHhcccCCCeeecccccccc-c-hHHHHHHHHhcccCccccEEecCCcc
Confidence 99988887666533221 22889999999999643322 2 11 111358999999999764
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00045 Score=74.09 Aligned_cols=176 Identities=15% Similarity=0.105 Sum_probs=105.6
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccC----------------------CCCEEE
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEK----------------------LFDRVI 161 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~----------------------~F~~~~ 161 (532)
-..++|.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++..--.. |.|...
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIE 94 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEE
Confidence 45688999999999998886643 6778999999999999999988753221 111111
Q ss_pred Eecc--CchhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEE-eecChHHhhhcCCCCce
Q 048213 162 FVEE--SESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLL-TARSLDVLSRKMDSQQD 232 (532)
Q Consensus 162 ~~~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-Ttr~~~v~~~~~~~~~~ 232 (532)
.+.. ...+.+..+.+.+. .+++-++|+|+++.. +.++.+...+..-...+.+|+ |+....+..........
T Consensus 95 i~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~ 174 (620)
T PRK14948 95 IDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQR 174 (620)
T ss_pred EeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeE
Confidence 1111 11122333333332 145568999999865 345555444433233444444 44333333322333457
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 233 FWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
+.+..++.++....+.+.+..... .-..+.+..|++.++|.+..+...
T Consensus 175 ~~f~~l~~~ei~~~L~~ia~kegi-~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 175 FDFRRIPLEAMVQHLSEIAEKESI-EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred EEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 888899998888877766542111 112456788999999977544433
No 127
>PRK06620 hypothetical protein; Validated
Probab=97.86 E-value=7.9e-05 Score=69.08 Aligned_cols=134 Identities=14% Similarity=-0.065 Sum_probs=78.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhccCcEEEEEcCCCCcccccccccccCC-
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKKEKMILVILDNIWENLDFHAVGIPHGD- 206 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~- 206 (532)
+.+.|+|++|+|||+|++.+++..... |- .. .... .+... ..-++++||+....+ ..+...+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~-----~~--~~~~---~~~~~--~~d~lliDdi~~~~~-~~lf~l~N~~ 109 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAY--II-----KD--IFFN---EEILE--KYNAFIIEDIENWQE-PALLHIFNII 109 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCE--Ec-----ch--hhhc---hhHHh--cCCEEEEeccccchH-HHHHHHHHHH
Confidence 668999999999999999987765321 11 10 0000 11222 335788999974321 112111100
Q ss_pred CCCCeEEEEeecChHHh------hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHH
Q 048213 207 DHKGCKVLLTARSLDVL------SRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVS 277 (532)
Q Consensus 207 ~~~gs~ilvTtr~~~v~------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 277 (532)
...|..+|+|++..... ...+....++.+++++.++-..++.+.+... ...--+++.+-|++.+.|---.
T Consensus 110 ~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 110 NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-SVTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHccCCHHH
Confidence 14567899998854331 1112334589999999999888888776421 1122356677777777665433
No 128
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.0017 Score=69.42 Aligned_cols=177 Identities=18% Similarity=0.138 Sum_probs=107.7
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc--------------------CCCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE--------------------KLFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~~ 163 (532)
-..++|.+..++.|.+++..+.+ ..+.++|+.|+||||+|+.+++..--. .++|...++
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid 94 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEID 94 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeee
Confidence 45788999999999999887665 456899999999999999988764211 122222222
Q ss_pred ccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEE-EeecChHHhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVL-LTARSLDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~il-vTtr~~~v~~~~~~~~~~~~ 234 (532)
..+ ..+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-...+.+| +||....+..........+.
T Consensus 95 ~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~ 174 (576)
T PRK14965 95 GASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFD 174 (576)
T ss_pred ccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhh
Confidence 211 1223444444443 2355689999997653 3444544333223345555 45544445433333345788
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch-HHHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP-VSIVTVA 282 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 282 (532)
+.+++.++....+...+.... ..-..+....|++.++|.. .|+..+-
T Consensus 175 f~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 175 FRRIPLQKIVDRLRYIADQEG-ISISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred cCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999988887776553211 1122556788889998855 4554443
No 129
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.0016 Score=61.05 Aligned_cols=171 Identities=13% Similarity=0.067 Sum_probs=102.4
Q ss_pred ccccccccchHHHHHHHHHhc-----CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHH
Q 048213 103 KDYEAFESRMSTFNDILNALK-----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNR 177 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~ 177 (532)
..-..|+|-++.++++-=.+. ....--+.++|++|.||||||.-+++...+. +....-..-........+...
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k~tsGp~leK~gDlaaiLt~ 100 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LKITSGPALEKPGDLAAILTN 100 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eEecccccccChhhHHHHHhc
Confidence 346789998888877665444 4456789999999999999999999988765 221111111122223333333
Q ss_pred HhccCcEEEEEcCCCCcc---------ccccccc-ccCCCCCCe-----------EEEEeecChHHhhh-cCCCCceEEc
Q 048213 178 LKKEKMILVILDNIWENL---------DFHAVGI-PHGDDHKGC-----------KVLLTARSLDVLSR-KMDSQQDFWV 235 (532)
Q Consensus 178 l~~~k~~LlVlDdv~~~~---------~~~~l~~-~~~~~~~gs-----------~ilvTtr~~~v~~~-~~~~~~~~~l 235 (532)
|. ..=.+.+|.+.... ..+++.. -....++++ -|=.|||.-.+..- ...-..+..+
T Consensus 101 Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rl 178 (332)
T COG2255 101 LE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRL 178 (332)
T ss_pred CC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeee
Confidence 43 34567888887541 1111100 001112222 24468886544310 1122346788
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 236 GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 236 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
+--+.+|-.+...+.+..- ..+-.++.+.+|+++..|-|--.
T Consensus 179 efY~~~eL~~Iv~r~a~~l-~i~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 179 EFYTVEELEEIVKRSAKIL-GIEIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred ecCCHHHHHHHHHHHHHHh-CCCCChHHHHHHHHhccCCcHHH
Confidence 8888999999998887521 12223667899999999999533
No 130
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.85 E-value=6.3e-05 Score=63.92 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=38.7
Q ss_pred EEEEccCCCchHHHHHHHHHHhhccCCCCEEEEec-----cCchh---hHHHHHHHHhccC-cEEEEEcCCCCc
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVE-----ESESG---RARSLCNRLKKEK-MILVILDNIWEN 194 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~-----~~~~~---~~~~l~~~l~~~k-~~LlVlDdv~~~ 194 (532)
|.|+|++|+|||++|+.+++..... | ...+. ..... ....+.+...... +.+|++||++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~--~--~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP--F--IEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE--E--EEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc--c--ccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 5799999999999999999987532 2 22111 11122 2333333333233 799999999754
No 131
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.84 E-value=0.00022 Score=79.67 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=85.5
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC------CCCEEEEecc----------Cch
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK------LFDRVIFVEE----------SES 168 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~~~~~----------~~~ 168 (532)
...++||+.++.++++.|.......+.++|++|+|||++|..++....... .......+.. ...
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e 256 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 256 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhH
Confidence 356899999999999999866666788999999999999999988753211 1121111111 111
Q ss_pred hhHHHHHHHHh-ccCcEEEEEcCCCCccc---------ccccccccCCCCCCeEEEEeecChHHh------hhcCCCCce
Q 048213 169 GRARSLCNRLK-KEKMILVILDNIWENLD---------FHAVGIPHGDDHKGCKVLLTARSLDVL------SRKMDSQQD 232 (532)
Q Consensus 169 ~~~~~l~~~l~-~~k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~ilvTtr~~~v~------~~~~~~~~~ 232 (532)
.....+.+.+. .+++.+|++|+++.... ...+..|....+ .-++|-+|...... .........
T Consensus 257 ~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~~~~~d~al~rRf~~ 335 (857)
T PRK10865 257 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYIEKDAALERRFQK 335 (857)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHHHhhhcHHHHhhCCE
Confidence 12333333332 24679999999975421 112222222222 23455444443320 111122235
Q ss_pred EEccCCCHHHHHHHHHHHh
Q 048213 233 FWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~ 251 (532)
+.+...+.++...++....
T Consensus 336 i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 336 VFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 6677778899998887654
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.84 E-value=0.00012 Score=81.98 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=85.9
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC------CCCEEEEecc----------Cch
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK------LFDRVIFVEE----------SES 168 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~~~~~----------~~~ 168 (532)
...++||+.++.+++..|.......+.++|++|+|||++|..++....... .......+.. ...
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e 251 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFE 251 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHH
Confidence 356899999999999998866667778999999999999999988753211 1111111100 111
Q ss_pred hhHHHHHHHHh-ccCcEEEEEcCCCCccc---------ccccccccCCCCCCeEEEEeecChHHh------hhcCCCCce
Q 048213 169 GRARSLCNRLK-KEKMILVILDNIWENLD---------FHAVGIPHGDDHKGCKVLLTARSLDVL------SRKMDSQQD 232 (532)
Q Consensus 169 ~~~~~l~~~l~-~~k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~ilvTtr~~~v~------~~~~~~~~~ 232 (532)
.....+.+.+. .+++.+|++|++..... ...+..+....+ .-++|-+|.....- .........
T Consensus 252 ~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~~~~~d~al~rRf~~ 330 (852)
T TIGR03346 252 ERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRKYIEKDAALERRFQP 330 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHHHhhcCHHHHhcCCE
Confidence 12333334443 24689999999975421 111222222222 23444444433220 111122346
Q ss_pred EEccCCCHHHHHHHHHHHh
Q 048213 233 FWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~ 251 (532)
+.+...+.++...++....
T Consensus 331 i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 331 VFVDEPTVEDTISILRGLK 349 (852)
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 7899999999999887654
No 133
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.83 E-value=0.0011 Score=61.46 Aligned_cols=121 Identities=10% Similarity=0.146 Sum_probs=75.6
Q ss_pred cccccccccchHHHHHHHHHh----cCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHH
Q 048213 102 NKDYEAFESRMSTFNDILNAL----KSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNR 177 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~ 177 (532)
+.....++|-+..++.|++=. ...+..-+.++|..|.|||++++++.+....+. ...+ -.....-.....+.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G-LRlI-ev~k~~L~~l~~l~~~ 100 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG-LRLI-EVSKEDLGDLPELLDL 100 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC-ceEE-EECHHHhccHHHHHHH
Confidence 344677899998888877532 244567788999999999999999998766543 1111 1222222345566666
Q ss_pred Hh-ccCcEEEEEcCCCCc---ccccccccccCC----CCCCeEEEEeecChHHhh
Q 048213 178 LK-KEKMILVILDNIWEN---LDFHAVGIPHGD----DHKGCKVLLTARSLDVLS 224 (532)
Q Consensus 178 l~-~~k~~LlVlDdv~~~---~~~~~l~~~~~~----~~~gs~ilvTtr~~~v~~ 224 (532)
+. ...+|+|.+||+.=. .....++..+.. ...+..|-+||..++..+
T Consensus 101 l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 101 LRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred HhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 65 357899999998633 234444333321 123445556666666553
No 134
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.80 E-value=6.4e-05 Score=82.10 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=86.9
Q ss_pred cccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC-C---CCEEEEecc------------Cchh
Q 048213 106 EAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-L---FDRVIFVEE------------SESG 169 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~---F~~~~~~~~------------~~~~ 169 (532)
..++||++++.++++.|......-+.++|++|+|||++|+.++....... . .++.++... ....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~ 265 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEK 265 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHH
Confidence 46899999999999988865556667999999999999999987642211 0 122221110 1112
Q ss_pred hHHHHHHHHhccCcEEEEEcCCCCc--------c--cccccccccCCCCCCeEEEEeecChHHh------hhcCCCCceE
Q 048213 170 RARSLCNRLKKEKMILVILDNIWEN--------L--DFHAVGIPHGDDHKGCKVLLTARSLDVL------SRKMDSQQDF 233 (532)
Q Consensus 170 ~~~~l~~~l~~~k~~LlVlDdv~~~--------~--~~~~l~~~~~~~~~gs~ilvTtr~~~v~------~~~~~~~~~~ 233 (532)
....+.+.+...++.+|++|++... . +...+..++...+ .-++|-+|...... .........+
T Consensus 266 rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq~I 344 (758)
T PRK11034 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRALARRFQKI 344 (758)
T ss_pred HHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHHHhhCcEE
Confidence 2334444454446789999999743 1 1111222322222 23455444433321 0011223579
Q ss_pred EccCCCHHHHHHHHHHHh
Q 048213 234 WVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~ 251 (532)
.+++++.++..+++....
T Consensus 345 ~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 345 DITEPSIEETVQIINGLK 362 (758)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999998654
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=3.3e-05 Score=51.56 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=23.7
Q ss_pred CCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCcc
Q 048213 457 PKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCL 501 (532)
Q Consensus 457 ~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l 501 (532)
++|++|++++|+|+.+|+.+ .+|++|++|++++|+ ++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l-----~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPEL-----SNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHG-----TTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCCCCcccCchH-----hCCCCCCEEEecCCC-CCCC
Confidence 35667777777777666655 566777777777643 5555
No 136
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.79 E-value=0.00024 Score=73.80 Aligned_cols=151 Identities=16% Similarity=0.144 Sum_probs=88.8
Q ss_pred ccccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccC----CCCEEEEecc
Q 048213 103 KDYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK----LFDRVIFVEE 165 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~~~~~ 165 (532)
.....+.|.+..+++|.+.+. -...+-+.++|++|+|||++|+++++...... .....+....
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 345667889999988887753 12356789999999999999999999764321 0111111000
Q ss_pred ----------CchhhHHHHHHHHh----ccCcEEEEEcCCCCcc---------cc-----cccccccCC--CCCCeEEEE
Q 048213 166 ----------SESGRARSLCNRLK----KEKMILVILDNIWENL---------DF-----HAVGIPHGD--DHKGCKVLL 215 (532)
Q Consensus 166 ----------~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~---------~~-----~~l~~~~~~--~~~gs~ilv 215 (532)
........+.+... .+++++|+||+++... +. ..+...+.. ...+..||.
T Consensus 259 ~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ 338 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIG 338 (512)
T ss_pred chhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEe
Confidence 01112233333332 2478999999997431 11 122111211 113455666
Q ss_pred eecChHHhh-hcC---CCCceEEccCCCHHHHHHHHHHHhCC
Q 048213 216 TARSLDVLS-RKM---DSQQDFWVGVLKEDEAWSLFKKMAGD 253 (532)
Q Consensus 216 Ttr~~~v~~-~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~ 253 (532)
||....... ... .-...+.++..+.++..++|..+...
T Consensus 339 ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 339 ASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 776554431 112 22346899999999999999988753
No 137
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00081 Score=71.54 Aligned_cols=173 Identities=16% Similarity=0.098 Sum_probs=105.6
Q ss_pred ccccccchHHHHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHhhcc--------------------CCCCEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKAENE--------------------KLFDRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~~ 163 (532)
-..++|.+..++.+.+++..+. ...+.++|+.|+||||+|+.+++..--. .++|...++
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eid 94 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEID 94 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEee
Confidence 4678999999999999988654 4557789999999999999998754211 133333232
Q ss_pred ccC--chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEE-EeecChHHhhhcCCCCceEE
Q 048213 164 EES--ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVL-LTARSLDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~~--~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTtr~~~v~~~~~~~~~~~~ 234 (532)
..+ ..+.+..+.+... .++.-++|+|++... ..++.+...+..-.....+| .||....+..........+.
T Consensus 95 aas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~ 174 (559)
T PRK05563 95 AASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFD 174 (559)
T ss_pred ccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEe
Confidence 221 1223344444432 246678899999855 34555544433222344444 44444433322223345788
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
..+++.++....+...+.... ..-..+....|++.++|-+..+
T Consensus 175 f~~~~~~ei~~~L~~i~~~eg-i~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 175 FKRISVEDIVERLKYILDKEG-IEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred cCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 899999998888877654211 1112456778888888876533
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00082 Score=70.12 Aligned_cols=177 Identities=15% Similarity=0.094 Sum_probs=105.6
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEccCCCchHHHHHHHHHHhhc---cC----------------CCCEEE-Ee
Q 048213 105 YEAFESRMSTFNDILNALKSPDVN-MLGIYGMGGIRKTTPAKEVAIKAEN---EK----------------LFDRVI-FV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~---~~----------------~F~~~~-~~ 163 (532)
-..++|.+..+..+.+++..+... .+.++|+.|+||||+|+.++....- .. .|.... .+
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 456789999999999999866544 5678999999999999998875421 00 011111 11
Q ss_pred cc--CchhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEee-cChHHhhhcCCCCceEE
Q 048213 164 EE--SESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTA-RSLDVLSRKMDSQQDFW 234 (532)
Q Consensus 164 ~~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTt-r~~~v~~~~~~~~~~~~ 234 (532)
.. ...+.+..+.+... .+++-++|+|+++.. ...+.+...+..-.....+|++| +...+..........+.
T Consensus 95 aas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~ 174 (486)
T PRK14953 95 AASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFI 174 (486)
T ss_pred CccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEE
Confidence 11 11222344444443 246679999998755 23444433333323344555444 43333322222345789
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 048213 235 VGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVA 282 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 282 (532)
+.+++.++....+...+-... ..-..+.+..|+..++|.+..+....
T Consensus 175 f~~ls~~el~~~L~~i~k~eg-i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 175 FSKPTKEQIKEYLKRICNEEK-IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred cCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999998888887654211 12235667788899999765444333
No 139
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=3.5e-05 Score=68.15 Aligned_cols=105 Identities=21% Similarity=0.165 Sum_probs=75.6
Q ss_pred cccccEEEeccccccCcccccccccccEEeecccccccc------ccCCcceEEeccccccCCCCCcccccCCCCCEEec
Q 048213 391 LTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCL 464 (532)
Q Consensus 391 l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L 464 (532)
+.+...++++.|.+.....+..++.|.+|.+++|.|+.+ -+++|..|.|.+|++.-.....++..+|.|++|.+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 345667788888887777788888888888888888877 56778888888887633334556777888888888
Q ss_pred CCcccccccccccccccccCCCccEEEeccCC
Q 048213 465 SSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 465 ~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
-+|.++....-- .-..+++++|++||..+..
T Consensus 121 l~Npv~~k~~YR-~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYR-LYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCce-eEEEEecCcceEeehhhhh
Confidence 888776544321 0011578888888887643
No 140
>PF14516 AAA_35: AAA-like domain
Probab=97.75 E-value=0.0014 Score=65.12 Aligned_cols=179 Identities=12% Similarity=0.071 Sum_probs=107.7
Q ss_pred ccccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---------------------
Q 048213 103 KDYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI--------------------- 161 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--------------------- 161 (532)
.+.+-.+.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+.+ .+.+..
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCEEEEEEeecCCCcccCCHHHHHHHH
Confidence 34556778886777777777653 3689999999999999999998877654 244443
Q ss_pred -----------------Eecc--CchhhHHHHHHHHh--ccCcEEEEEcCCCCcccc----ccccccc----------CC
Q 048213 162 -----------------FVEE--SESGRARSLCNRLK--KEKMILVILDNIWENLDF----HAVGIPH----------GD 206 (532)
Q Consensus 162 -----------------~~~~--~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~----~~l~~~~----------~~ 206 (532)
|... +.......+.+.+. .+++.+|++|+++..-.. +.+...+ +.
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 0000 00111122333332 158899999999854221 1111100 00
Q ss_pred CCCCeEEEEeecChHHhhh----cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 048213 207 DHKGCKVLLTARSLDVLSR----KMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVA 282 (532)
Q Consensus 207 ~~~gs~ilvTtr~~~v~~~----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 282 (532)
..+=+-|++.+........ .......+.|++++.+|...|..++-... .....+.|...+||+|.-+..++
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----SQEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----CHHHHHHHHHHHCCCHHHHHHHH
Confidence 1111122332221111110 11223478999999999999998864321 13338999999999999999999
Q ss_pred HHHccC
Q 048213 283 RALRNK 288 (532)
Q Consensus 283 ~~l~~~ 288 (532)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 999754
No 141
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00099 Score=65.89 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=89.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhccC--------------------CCCEEEEeccC-----chhhHHHHHHHHh--
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENEK--------------------LFDRVIFVEES-----ESGRARSLCNRLK-- 179 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~~~~~~-----~~~~~~~l~~~l~-- 179 (532)
...+.++|+.|+||||+|..+++..--.. |=|...+.... ..+.+..+.+.+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 45688999999999999999887643211 11222222111 1123334444443
Q ss_pred --ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEEccCCCHHHHHHHHHHHhCCC
Q 048213 180 --KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDY 254 (532)
Q Consensus 180 --~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 254 (532)
.+++-++|+|+++.. +..+.+...+-.-..++.+|++|.+.. +..........+.+.+++.+++.+.+......
T Consensus 102 ~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~- 180 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE- 180 (328)
T ss_pred cccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-
Confidence 234455678999865 344454444332234666777776654 33333333457899999999999988765311
Q ss_pred CCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 255 IEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 255 ~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
...+.+..++..++|.|+....+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 12344567789999999755443
No 142
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.71 E-value=0.00017 Score=65.11 Aligned_cols=89 Identities=16% Similarity=0.079 Sum_probs=57.7
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-----EeccCchhhHHHHHHHHh
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-----FVEESESGRARSLCNRLK 179 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-----~~~~~~~~~~~~l~~~l~ 179 (532)
...+||-++.++++--...+++.+-+.|.||+|+||||-+..+++..--.. +...+ .++...+.....++..-+
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-~ke~vLELNASdeRGIDvVRn~IK~FAQ 104 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDS-YKEAVLELNASDERGIDVVRNKIKMFAQ 104 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChh-hhhHhhhccCccccccHHHHHHHHHHHH
Confidence 457899999999887777799999999999999999998887777543211 11111 122222222222222221
Q ss_pred ------ccCcEEEEEcCCCCc
Q 048213 180 ------KEKMILVILDNIWEN 194 (532)
Q Consensus 180 ------~~k~~LlVlDdv~~~ 194 (532)
.++.-.+|||..++.
T Consensus 105 ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 105 KKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred hhccCCCCceeEEEeeccchh
Confidence 256668999999865
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=3.6e-05 Score=51.37 Aligned_cols=41 Identities=27% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccc
Q 048213 432 SQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQ 474 (532)
Q Consensus 432 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~ 474 (532)
++|++|++++|++ .+.+..++++++|++|++++|.|+.++.
T Consensus 1 ~~L~~L~l~~N~i--~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQI--TDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS---SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCC--cccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4788999999976 5666669999999999999999987653
No 144
>CHL00176 ftsH cell division protein; Validated
Probab=97.70 E-value=0.00077 Score=72.44 Aligned_cols=164 Identities=20% Similarity=0.219 Sum_probs=92.5
Q ss_pred cccccchHHHHHHHHH---hcCC---------CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eecc---Cc
Q 048213 106 EAFESRMSTFNDILNA---LKSP---------DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEE---SE 167 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~---l~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~---~~ 167 (532)
..+.|.++..+++.+. +... ..+-+.++|++|+|||+||+++++...+. |-..- +... ..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p--~i~is~s~f~~~~~g~~ 260 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP--FFSISGSEFVEMFVGVG 260 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--eeeccHHHHHHHhhhhh
Confidence 3466766655554443 3321 24568999999999999999999876432 21110 1000 01
Q ss_pred hhhHHHHHHHHhccCcEEEEEcCCCCcc------------c----ccccccccC--CCCCCeEEEEeecChHHhh-hcCC
Q 048213 168 SGRARSLCNRLKKEKMILVILDNIWENL------------D----FHAVGIPHG--DDHKGCKVLLTARSLDVLS-RKMD 228 (532)
Q Consensus 168 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~gs~ilvTtr~~~v~~-~~~~ 228 (532)
......+.+.......++|++||++... . +..+...+. ....+..||.||....... ....
T Consensus 261 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlR 340 (638)
T CHL00176 261 AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLR 340 (638)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhc
Confidence 1122333444444578999999996431 1 112211111 1234566777776654331 1121
Q ss_pred ---CCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 048213 229 ---SQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAG 273 (532)
Q Consensus 229 ---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g 273 (532)
-...+.++..+.++-.++|..++...... .......+++.+.|
T Consensus 341 pGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 341 PGRFDRQITVSLPDREGRLDILKVHARNKKLS--PDVSLELIARRTPG 386 (638)
T ss_pred cccCceEEEECCCCHHHHHHHHHHHHhhcccc--hhHHHHHHHhcCCC
Confidence 23578888899999999998887542211 12345677777777
No 145
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=7.1e-06 Score=76.60 Aligned_cols=148 Identities=21% Similarity=0.156 Sum_probs=73.8
Q ss_pred HHhhhhcccccC--CchhhhccccccEEEeccccccC--cccccccccccEEeecccc-cccc-------ccCCcceEEe
Q 048213 372 VVIDLTYMNLLS--LPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNE-LTRA-------GSSQLKHLSV 439 (532)
Q Consensus 372 ~~l~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~-l~~~-------~l~~Lr~L~l 439 (532)
.++|++...++- +..-++++.+|+.|.+.++.+.+ ...|.+-.+|+.|+++.++ +++. .++.|..|+|
T Consensus 188 q~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl 267 (419)
T KOG2120|consen 188 QHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL 267 (419)
T ss_pred HHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc
Confidence 345555554422 23334556666666666666666 2345566666666666552 3222 5566666666
Q ss_pred ccccccCCCCCccccc-CCCCCEEecCCc--ccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEE
Q 048213 440 RGLRASAPNPTESEVA-LPKLETVCLSSI--NIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCL 516 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~-l~~L~~L~L~~~--~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L 516 (532)
+.|....+.....+.+ -++|.-|+|+|+ ++..-.-+++ .-+.++|..|||++|..++.- -...+-+++.|++|
T Consensus 268 sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL---~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 268 SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL---VRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHL 343 (419)
T ss_pred hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH---HHhCCceeeeccccccccCch-HHHHHHhcchheee
Confidence 6664312222222221 235666666666 2221100110 023466666666666665542 22222466666666
Q ss_pred EeecCCc
Q 048213 517 EICECPV 523 (532)
Q Consensus 517 ~l~~c~~ 523 (532)
.++.|.-
T Consensus 344 SlsRCY~ 350 (419)
T KOG2120|consen 344 SLSRCYD 350 (419)
T ss_pred ehhhhcC
Confidence 6666653
No 146
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00037 Score=73.08 Aligned_cols=143 Identities=21% Similarity=0.161 Sum_probs=88.1
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc-Cc-----------h
Q 048213 107 AFESRMSTFNDILNALK------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE-SE-----------S 168 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~-~~-----------~ 168 (532)
.-+|-++.+++|++.|. .-.-+++++||++|+|||+|++.+++....+ |-....... ++ .
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--fvR~sLGGvrDEAEIRGHRRTYIG 401 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--FVRISLGGVRDEAEIRGHRRTYIG 401 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--EEEEecCccccHHHhccccccccc
Confidence 45699999999999987 2345899999999999999999999876544 433331111 11 1
Q ss_pred hhHHHHHHHHh--ccCcEEEEEcCCCCcc------------------cccccccccCCCC-CCeEE--EEeecChH-Hhh
Q 048213 169 GRARSLCNRLK--KEKMILVILDNIWENL------------------DFHAVGIPHGDDH-KGCKV--LLTARSLD-VLS 224 (532)
Q Consensus 169 ~~~~~l~~~l~--~~k~~LlVlDdv~~~~------------------~~~~l~~~~~~~~-~gs~i--lvTtr~~~-v~~ 224 (532)
..-.++.+.++ +.++=+++||.++... |=..|........ -=|.| |.|..+-+ ++.
T Consensus 402 amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~ 481 (782)
T COG0466 402 AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPA 481 (782)
T ss_pred cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCCh
Confidence 12234444443 2478899999997431 1111111100000 01334 33444433 443
Q ss_pred hcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 225 RKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 225 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
-.+....++++.+-+++|=.++-.++.
T Consensus 482 PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 482 PLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred HHhcceeeeeecCCChHHHHHHHHHhc
Confidence 356677899999999999888777665
No 147
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=1.7e-05 Score=85.66 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=84.0
Q ss_pred hhHHhhhhcccc--cCCchhhh-ccccccEEEeccccccC---cccccccccccEEeecccccccc----ccCCcceEEe
Q 048213 370 ARVVIDLTYMNL--LSLPSSLG-LLTNLQTLCLYYCKLQD---TSVLGELKILEILRLRVNELTRA----GSSQLKHLSV 439 (532)
Q Consensus 370 ~~~~l~l~~~~l--~~lp~~~~-~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l 439 (532)
+.+.+++.|... ...|..++ .+|.|+.|.+.+-.+.. .....++++|..||+++++++.+ .+++|+.|.+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSM 202 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhc
Confidence 336677777543 22455555 47899999998876654 23456889999999999988877 7888888888
Q ss_pred ccccccCCCCCcccccCCCCCEEecCCccccccccccc-cccc-ccCCCccEEEeccC
Q 048213 440 RGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQV-AAMS-CGIQNLKRLILFNC 495 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~-~~~~-~~L~~L~~L~L~~c 495 (532)
.+-.+........+-+|++|+.||+|......-+.-+. ...+ -.|++|+.||.++.
T Consensus 203 rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 203 RNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred cCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 88766322334456678999999999873332221110 0011 13789999998873
No 148
>PRK10536 hypothetical protein; Provisional
Probab=97.66 E-value=0.00041 Score=65.01 Aligned_cols=56 Identities=27% Similarity=0.227 Sum_probs=43.9
Q ss_pred cccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE
Q 048213 104 DYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI 161 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 161 (532)
+...+.+|......++.++.+. .++.+.|++|.|||+||.++..+.-..+.|+..+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 3456778889999999988764 4999999999999999999888643234476665
No 149
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.65 E-value=9.1e-05 Score=62.95 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=52.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhcc----CCCCEEE---------------------Eec---cCchhhHHHHHHH
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENE----KLFDRVI---------------------FVE---ESESGRARSLCNR 177 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~---------------------~~~---~~~~~~~~~l~~~ 177 (532)
+.+.+.|+|.+|+|||+++..+++..... .+.+... ... .+.....+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34789999999999999999999875421 0112111 000 1233445667777
Q ss_pred HhccCcEEEEEcCCCCc-c--cccccccccCCCCCCeEEEEeecC
Q 048213 178 LKKEKMILVILDNIWEN-L--DFHAVGIPHGDDHKGCKVLLTARS 219 (532)
Q Consensus 178 l~~~k~~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~ilvTtr~ 219 (532)
+.+.+..+||+|+++.. . .++.+..-. +..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL--NESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT--CSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH--hCCCCeEEEEECh
Confidence 77555579999999875 2 233332221 2566777776654
No 150
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.62 E-value=0.00014 Score=67.77 Aligned_cols=151 Identities=17% Similarity=0.102 Sum_probs=83.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEeccCc---------hhhHHHHHHHHhccCcEEEEEcCCCCcc-
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEESE---------SGRARSLCNRLKKEKMILVILDNIWENL- 195 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~~~---------~~~~~~l~~~l~~~k~~LlVlDdv~~~~- 195 (532)
...+.|+|..|+|||.|.+++++...... ............ ......+.+.+. .-=+|++||++...
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC
Confidence 45789999999999999999999765431 122222221111 112334555555 23489999997652
Q ss_pred --ccccc-ccccCC-CCCCeEEEEeecChHHh-h-------hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHH
Q 048213 196 --DFHAV-GIPHGD-DHKGCKVLLTARSLDVL-S-------RKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWV 263 (532)
Q Consensus 196 --~~~~l-~~~~~~-~~~gs~ilvTtr~~~v~-~-------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~ 263 (532)
.|... ..-+.. ...|.+||+|++..... . .......++++.+++.++-.+++.+.+..... .--+++
T Consensus 112 ~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~-~l~~~v 190 (219)
T PF00308_consen 112 KQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI-ELPEEV 190 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---S-HHH
T ss_pred chHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-CCcHHH
Confidence 22221 111100 13466899999654321 0 11233458999999999999999988762111 123566
Q ss_pred HHHHHHHcCCchHHHHH
Q 048213 264 AKDVAKKCAGLPVSIVT 280 (532)
Q Consensus 264 ~~~i~~~c~glPLai~~ 280 (532)
++-|++.+.+..-.+..
T Consensus 191 ~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 191 IEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHTTSSHHHHHH
T ss_pred HHHHHHhhcCCHHHHHH
Confidence 66777776665544433
No 151
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.60 E-value=0.00015 Score=71.77 Aligned_cols=44 Identities=11% Similarity=-0.042 Sum_probs=34.4
Q ss_pred HHHHHhc-CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE
Q 048213 117 DILNALK-SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI 161 (532)
Q Consensus 117 ~i~~~l~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 161 (532)
++++.+. -+.-...+|+|++|+||||||+.+|+..... +|+..+
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~ 202 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHL 202 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEE
Confidence 4455444 2344778999999999999999999988775 788775
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0017 Score=63.90 Aligned_cols=173 Identities=11% Similarity=0.092 Sum_probs=106.6
Q ss_pred cccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc-------------CCCCEEEEecc-----C
Q 048213 106 EAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE-------------KLFDRVIFVEE-----S 166 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------~~F~~~~~~~~-----~ 166 (532)
..++|.+..++.+.+.+..+.+ ....++|+.|+||+++|..+++..--. ..+++..+... .
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 3578999999999998887764 789999999999999999887753211 11211111110 0
Q ss_pred ---------------------chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecC
Q 048213 167 ---------------------ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARS 219 (532)
Q Consensus 167 ---------------------~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~ 219 (532)
..+.+..+.+.+. .+++-++|+|++... ...+.+...+-.-.+..-|++|+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 0112334444443 256678999998755 3344443333211233444555554
Q ss_pred hHHhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 048213 220 LDVLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVA 282 (532)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 282 (532)
..+..........+.+.++++++..+.+.+..... ........++..++|.|.......
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~----~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE----ILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc----cchhHHHHHHHHcCCCHHHHHHHH
Confidence 44444344445689999999999999998864311 111124688899999996655433
No 153
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.59 E-value=0.00069 Score=70.41 Aligned_cols=169 Identities=16% Similarity=0.122 Sum_probs=91.5
Q ss_pred ccccccchHHHHHHHHHh---c-------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Ee--ccCchh
Q 048213 105 YEAFESRMSTFNDILNAL---K-------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FV--EESESG 169 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l---~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~--~~~~~~ 169 (532)
...+.|.+..++.+.+.. . -...+-|.++|++|+|||.+|+++++..... .|.... +. ......
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~-~~~l~~~~l~~~~vGese~ 305 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP-LLRLDVGKLFGGIVGESES 305 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-EEEEEhHHhcccccChHHH
Confidence 345667666555544321 1 1235678999999999999999999976432 011110 00 011122
Q ss_pred hHHHHHHHHhccCcEEEEEcCCCCccc----c----------cccccccCCCCCCeEEEEeecChHHhh-hcC---CCCc
Q 048213 170 RARSLCNRLKKEKMILVILDNIWENLD----F----------HAVGIPHGDDHKGCKVLLTARSLDVLS-RKM---DSQQ 231 (532)
Q Consensus 170 ~~~~l~~~l~~~k~~LlVlDdv~~~~~----~----------~~l~~~~~~~~~gs~ilvTtr~~~v~~-~~~---~~~~ 231 (532)
....+.+......+++|++|+++.... . ..+...+.....+.-||.||....... ... .-..
T Consensus 306 ~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~ 385 (489)
T CHL00195 306 RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDE 385 (489)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCe
Confidence 333444443445789999999974310 0 001111111233445666776654321 111 2335
Q ss_pred eEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 232 DFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 232 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
.+.++..+.++-.++|..+.....+..........+++.+.|.
T Consensus 386 ~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 386 IFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKF 428 (489)
T ss_pred EEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCC
Confidence 7888888999999999887753222111112245666666664
No 154
>PHA00729 NTP-binding motif containing protein
Probab=97.56 E-value=0.00027 Score=65.06 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=66.7
Q ss_pred HHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhcc------------CCCCEEEEeccCchhhHHHHHHHHhccCc
Q 048213 116 NDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENE------------KLFDRVIFVEESESGRARSLCNRLKKEKM 183 (532)
Q Consensus 116 ~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------~~F~~~~~~~~~~~~~~~~l~~~l~~~k~ 183 (532)
.++++.+...+...|.|.|.+|+||||||..+.+..-.. ....+.++ +.......+.....+..+
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fi---d~~~Ll~~L~~a~~~~~~ 82 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFF---ELPDALEKIQDAIDNDYR 82 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEE---EHHHHHHHHHHHHhcCCC
Confidence 456666777777889999999999999999998874211 01112222 233444555544443222
Q ss_pred -EEEEEcCC--CCc-ccccccccccCCCCCCeEEEEeecChHHhhhcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 184 -ILVILDNI--WEN-LDFHAVGIPHGDDHKGCKVLLTARSLDVLSRKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 184 -~LlVlDdv--~~~-~~~~~l~~~~~~~~~gs~ilvTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
=+||+||+ |-. ..|..- . . +-.-.+..........+.+.++++++..+.+....
T Consensus 83 ~dlLIIDd~G~~~~~~~wh~~--~---------~---~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 83 IPLIIFDDAGIWLSKYVWYED--Y---------M---KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred CCEEEEeCCchhhcccchhhh--c---------c---chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence 37999994 322 123210 0 0 00000111112234567788888888888888754
No 155
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.54 E-value=0.00015 Score=68.62 Aligned_cols=36 Identities=14% Similarity=-0.104 Sum_probs=30.5
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI 161 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 161 (532)
.....++|+|++|+|||||++.++++.... +|+..+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~ 49 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYL 49 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEE
Confidence 345789999999999999999999987665 787775
No 156
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.002 Score=64.10 Aligned_cols=144 Identities=10% Similarity=0.051 Sum_probs=86.9
Q ss_pred cccc-chHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccC--------------------CCCEEEEec
Q 048213 107 AFES-RMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEK--------------------LFDRVIFVE 164 (532)
Q Consensus 107 ~~~g-R~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~~~~ 164 (532)
.++| -+..++.+.+.+..+.+ ....++|+.|+||||+|..+.+..--.. |-|......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 3455 66677777777776654 5568999999999999999877642111 223332221
Q ss_pred cCc---hhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEE
Q 048213 165 ESE---SGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFW 234 (532)
Q Consensus 165 ~~~---~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~ 234 (532)
... .+.+..+.+.+. .+.+-++|+|++... +..+.+...+..-..++.+|++|.+.. +..........++
T Consensus 86 ~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~ 165 (329)
T PRK08058 86 DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVE 165 (329)
T ss_pred ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeee
Confidence 111 123334444443 245567999998755 234444444433345666666666543 3333334456899
Q ss_pred ccCCCHHHHHHHHHHH
Q 048213 235 VGVLKEDEAWSLFKKM 250 (532)
Q Consensus 235 l~~L~~~~~~~Lf~~~ 250 (532)
+.+++.++..+.+...
T Consensus 166 ~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 166 FRPLPPESLIQRLQEE 181 (329)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 9999999998888653
No 157
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=7.6e-06 Score=84.38 Aligned_cols=106 Identities=25% Similarity=0.240 Sum_probs=81.3
Q ss_pred HHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEec
Q 048213 365 MEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSVR 440 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~ 440 (532)
+........+++.++.+..+...+..+.+|++|++++|.+..+..+..++.|+.|++.+|.+..+ .+++|+.++++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS 170 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence 33444446778888888877766788899999999999999888888888899999999988877 47788889999
Q ss_pred cccccCCCCCcc-cccCCCCCEEecCCcccccc
Q 048213 441 GLRASAPNPTES-EVALPKLETVCLSSINIERI 472 (532)
Q Consensus 441 ~~~~~~~~~~~~-~~~l~~L~~L~L~~~~l~~l 472 (532)
+|++ ...... ...+.+|+.+.+.+|.+..+
T Consensus 171 ~n~i--~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 171 YNRI--VDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cchh--hhhhhhhhhhccchHHHhccCCchhcc
Confidence 8876 222211 46778888888888866543
No 158
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0021 Score=66.24 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=63.1
Q ss_pred ccccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE------EeccC
Q 048213 105 YEAFESRMSTFNDILNALK---S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI------FVEES 166 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~------~~~~~ 166 (532)
-..+-|.+..+.++.+.+. . ...+-|.+||++|.|||.||+++++...+- |-.+. -....
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f~~isApeivSGvSGE 266 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--FLSISAPEIVSGVSGE 266 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--eEeecchhhhcccCcc
Confidence 4567888998888887765 1 246789999999999999999999988765 43222 11112
Q ss_pred chhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 167 ESGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 167 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
.+..+..++..-.+.-.|++++|+++..
T Consensus 267 SEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 267 SEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred cHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 2334556666655568899999999743
No 159
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00024 Score=71.13 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=37.4
Q ss_pred HhhHHhhhhcccccCCchhhhccccccEEEecccc-ccC-cccccccccccEEeeccc-cccccccCCcceEEeccc
Q 048213 369 RARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCK-LQD-TSVLGELKILEILRLRVN-ELTRAGSSQLKHLSVRGL 442 (532)
Q Consensus 369 ~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~-l~~-~~~i~~l~~L~~L~l~~~-~l~~~~l~~Lr~L~l~~~ 442 (532)
.+...|++.+|++..+|. -..+|+.|.+.+|. +.. |..+ .++|++|.+++| .+..+ .+.|+.|.+.++
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-P~sLe~L~L~~n 122 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-PESVRSLEIKGS 122 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-ccccceEEeCCC
Confidence 334566777777777662 23357777777653 222 2222 246777777766 44433 234666666544
No 160
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.47 E-value=0.0012 Score=68.49 Aligned_cols=172 Identities=13% Similarity=0.054 Sum_probs=98.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc-CCCCEEEEeccCc-h----------hhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE-KLFDRVIFVEESE-S----------GRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~~~~~~~-~----------~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
...+.|+|..|+|||.|++++.+..... ............. . .....+.+.+. ..-+||+||+...
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCEEEEeccccc
Confidence 3568999999999999999999864432 1122221111110 0 11122222232 2348999999754
Q ss_pred c---cc-cccccccCC-CCCCeEEEEeecChHHh--------hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCC-Ccch
Q 048213 195 L---DF-HAVGIPHGD-DHKGCKVLLTARSLDVL--------SRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIE-GSEF 260 (532)
Q Consensus 195 ~---~~-~~l~~~~~~-~~~gs~ilvTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~ 260 (532)
. .+ +.+...+.. ...|..||+|+....-. ...+...-++.+.+++.++-.+++.+.+-.... ..-.
T Consensus 219 ~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~ 298 (450)
T PRK14087 219 SYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVT 298 (450)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCC
Confidence 2 12 222221111 12345688887643211 111333467889999999999999988752211 1234
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHc-----c---C--ChHHHHHHHHHh
Q 048213 261 KWVAKDVAKKCAGLPVSIVTVARALR-----N---K--RLFDWKDALEQL 300 (532)
Q Consensus 261 ~~~~~~i~~~c~glPLai~~~~~~l~-----~---~--~~~~w~~~l~~~ 300 (532)
+++..-|+..+.|.|-.+.-+...+. . + +.+.-+.++...
T Consensus 299 ~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 299 EEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 67889999999999977765553331 1 2 555555555544
No 161
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.46 E-value=0.0018 Score=71.84 Aligned_cols=167 Identities=14% Similarity=0.123 Sum_probs=94.5
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe------cc
Q 048213 105 YEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV------EE 165 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~------~~ 165 (532)
...+.|.+..++.|.+.+. -...+-+.++|++|+|||++|+++++..... |-..-.. ..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--fi~v~~~~l~~~~vG 529 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--FIAVRGPEILSKWVG 529 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--EEEEehHHHhhcccC
Confidence 3456677777776666543 1234568899999999999999999876432 3211100 01
Q ss_pred CchhhHHHHHHHHhccCcEEEEEcCCCCcc--------------cccccccccCC--CCCCeEEEEeecChHHhh-hcC-
Q 048213 166 SESGRARSLCNRLKKEKMILVILDNIWENL--------------DFHAVGIPHGD--DHKGCKVLLTARSLDVLS-RKM- 227 (532)
Q Consensus 166 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~--~~~gs~ilvTtr~~~v~~-~~~- 227 (532)
.....+..+.+.......++|++|+++... ....+...+.. ...+.-||.||....... ...
T Consensus 530 ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allR 609 (733)
T TIGR01243 530 ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLR 609 (733)
T ss_pred cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcC
Confidence 112234445555444577999999986431 01112112211 123455666776655431 122
Q ss_pred --CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 228 --DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 228 --~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
.-...+.+...+.++-.++|..+.......+.. ....+++.+.|.-
T Consensus 610 pgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 610 PGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred CCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 234578888889998889987765432211111 1456667777653
No 162
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.44 E-value=0.0011 Score=67.28 Aligned_cols=52 Identities=23% Similarity=0.191 Sum_probs=41.2
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCC
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFD 158 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 158 (532)
...+++.++..+.++..+... +.+.++|++|+|||++|+.+++.......|+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~ 225 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQ 225 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccc
Confidence 345678889999999988754 5788899999999999999998765443343
No 163
>PRK08118 topology modulation protein; Reviewed
Probab=97.44 E-value=0.00023 Score=63.29 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=39.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhcc-CCCCEEEE----eccCchhhHHHHHHHHhccCcEEEEEcCCCC
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENE-KLFDRVIF----VEESESGRARSLCNRLKKEKMILVILDNIWE 193 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~~----~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 193 (532)
+.|.|+|++|+||||||+.+++..... -+||..++ ...+..+....+.+.+. +.. .|+|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~-~~~--wVidG~~~ 69 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVK-EDE--WIIDGNYG 69 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhc-CCC--EEEeCCcc
Confidence 468999999999999999999986654 44665542 22333333333333343 344 46676543
No 164
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.42 E-value=0.0028 Score=66.03 Aligned_cols=171 Identities=16% Similarity=0.084 Sum_probs=97.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEeccCc-hh--------hHHHHHHHHhccCcEEEEEcCCCCccc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEESE-SG--------RARSLCNRLKKEKMILVILDNIWENLD 196 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~~~-~~--------~~~~l~~~l~~~k~~LlVlDdv~~~~~ 196 (532)
...+.|+|+.|+|||+|++++++....+. ..........+. .. ....+.+.+. +.-+|+|||+.....
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAG 225 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcC
Confidence 46689999999999999999999865431 111111111110 00 1123333443 234899999975311
Q ss_pred ---c-cccccccCC-CCCCeEEEEeecChH--Hh------hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHH
Q 048213 197 ---F-HAVGIPHGD-DHKGCKVLLTARSLD--VL------SRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWV 263 (532)
Q Consensus 197 ---~-~~l~~~~~~-~~~gs~ilvTtr~~~--v~------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~ 263 (532)
+ +.+...+.. ...|..+|+||.... +. ........++.+.+.+.++-..++.+.+... ...--+++
T Consensus 226 ~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~-~~~l~~e~ 304 (450)
T PRK00149 226 KERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE-GIDLPDEV 304 (450)
T ss_pred CHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc-CCCCCHHH
Confidence 1 122111110 123455777776532 10 1123334578999999999999999987532 12223667
Q ss_pred HHHHHHHcCCchHHHH----HHHHH--HccC--ChHHHHHHHHHh
Q 048213 264 AKDVAKKCAGLPVSIV----TVARA--LRNK--RLFDWKDALEQL 300 (532)
Q Consensus 264 ~~~i~~~c~glPLai~----~~~~~--l~~~--~~~~w~~~l~~~ 300 (532)
..-|++.+.|..-.+. .+..+ +.++ +.+..+.++...
T Consensus 305 l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 305 LEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8888888888765433 22222 1222 777777777765
No 165
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.41 E-value=0.0029 Score=65.11 Aligned_cols=171 Identities=16% Similarity=0.065 Sum_probs=94.9
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEeccCc-h--------hhHHHHHHHHhccCcEEEEEcCCCCccc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEESE-S--------GRARSLCNRLKKEKMILVILDNIWENLD 196 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~~~-~--------~~~~~l~~~l~~~k~~LlVlDdv~~~~~ 196 (532)
...+.|+|+.|+|||.|++++++....+. ............ . .....+.+.+. ..-+|+|||+.....
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 35689999999999999999998765431 111111111100 0 01122333343 234899999975421
Q ss_pred ---c-cccccccCC-CCCCeEEEEeecChHHh-h-------hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHH
Q 048213 197 ---F-HAVGIPHGD-DHKGCKVLLTARSLDVL-S-------RKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWV 263 (532)
Q Consensus 197 ---~-~~l~~~~~~-~~~gs~ilvTtr~~~v~-~-------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~ 263 (532)
+ +.+...+.. ...|..+|+|+....-. . ..+.....+.+.+.+.++-.+++.+.+.... ..--+++
T Consensus 214 ~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~-~~l~~e~ 292 (405)
T TIGR00362 214 KERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG-LELPDEV 292 (405)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHH
Confidence 1 112111111 12345678877642211 1 1122234789999999999999998876321 2223677
Q ss_pred HHHHHHHcCCchHHHHH----HHHHH--ccC--ChHHHHHHHHHh
Q 048213 264 AKDVAKKCAGLPVSIVT----VARAL--RNK--RLFDWKDALEQL 300 (532)
Q Consensus 264 ~~~i~~~c~glPLai~~----~~~~l--~~~--~~~~w~~~l~~~ 300 (532)
..-|++.+.|..-.+.- +..+- .++ +.+....++...
T Consensus 293 l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 293 LEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 88888888887654332 22211 122 666677776654
No 166
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0088 Score=60.04 Aligned_cols=176 Identities=16% Similarity=0.177 Sum_probs=97.1
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHhhccC-CCC-EEE------------------
Q 048213 106 EAFESRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFD-RVI------------------ 161 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~------------------ 161 (532)
..+.+|+++++++...|. .+...-+.|+|..|.|||+.++.+++...... ..+ ..+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 348899999999998876 33344499999999999999999998765431 121 111
Q ss_pred Eec-----cCchhhHHHHHHHHhc-cCcEEEEEcCCCCccccc--ccccccCC-CCCCeEE--EEeecChHHhh------
Q 048213 162 FVE-----ESESGRARSLCNRLKK-EKMILVILDNIWENLDFH--AVGIPHGD-DHKGCKV--LLTARSLDVLS------ 224 (532)
Q Consensus 162 ~~~-----~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~--~l~~~~~~-~~~gs~i--lvTtr~~~v~~------ 224 (532)
+.. .+.......+.+.+.. ++.+++|||+++....-+ .+-.-+.. ....++| |..+.+.....
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 100 1122234455555543 678999999998653321 11011111 1114443 33444433221
Q ss_pred -hcCCCCceEEccCCCHHHHHHHHHHHhC----CCCCCcchHHHHHHHHHHcC-CchHHHHHHH
Q 048213 225 -RKMDSQQDFWVGVLKEDEAWSLFKKMAG----DYIEGSEFKWVAKDVAKKCA-GLPVSIVTVA 282 (532)
Q Consensus 225 -~~~~~~~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~-glPLai~~~~ 282 (532)
...+. ..+...|=+.++-...+...+- .....+..-+.+..++..-+ -.-.||..+-
T Consensus 177 ~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 177 KSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 11122 2367778888888888887763 22223333333444444444 4445554443
No 167
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.00021 Score=71.50 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=54.5
Q ss_pred hhccccccEEEeccccccCcccccccccccEEeeccc-ccccc---ccCCcceEEeccccccCCCCCcccccCCCCCEEe
Q 048213 388 LGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVN-ELTRA---GSSQLKHLSVRGLRASAPNPTESEVALPKLETVC 463 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~-~l~~~---~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 463 (532)
+..+.+++.|++++|.+..++.+ -.+|++|.+++| ++..+ -.++|++|.+++|.. +..+| ++|+.|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~-L~sLP------~sLe~L~ 118 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPE-ISGLP------ESVRSLE 118 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchhhhhhhheEccCccc-ccccc------cccceEE
Confidence 44567899999999988775532 236999999875 44443 235899999999854 34444 3577777
Q ss_pred cCCcc---cccccccc
Q 048213 464 LSSIN---IERIWQNQ 476 (532)
Q Consensus 464 L~~~~---l~~lp~~~ 476 (532)
++++. +..+|+++
T Consensus 119 L~~n~~~~L~~LPssL 134 (426)
T PRK15386 119 IKGSATDSIKNVPNGL 134 (426)
T ss_pred eCCCCCcccccCcchH
Confidence 87764 55666554
No 168
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0049 Score=60.52 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccC-----------------CCCEEEE--eccC------
Q 048213 113 STFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEK-----------------LFDRVIF--VEES------ 166 (532)
Q Consensus 113 ~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~-----------------~F~~~~~--~~~~------ 166 (532)
...+.+...+..+.+ ..+.++|+.|+||+++|..+++..--.. |=|.... ....
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~ 90 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLR 90 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccccc
Confidence 345666666666554 4688999999999999999886532211 1111112 1110
Q ss_pred ---chhhHHHHHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceEEcc
Q 048213 167 ---ESGRARSLCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDFWVG 236 (532)
Q Consensus 167 ---~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~~l~ 236 (532)
..+.+..+.+.+. .+++-++|+|+++... .-+.+...+-.-..++.+|++|.+ ..+..........+.+.
T Consensus 91 ~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~ 170 (319)
T PRK08769 91 TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 (319)
T ss_pred ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCC
Confidence 0112233333332 2466789999998652 233333333222345666666655 44433333334578899
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 237 VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 237 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
+++.+++.+.+... + . ....+..++..++|.|+....+
T Consensus 171 ~~~~~~~~~~L~~~-~--~----~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 171 LPPAHEALAWLLAQ-G--V----SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CcCHHHHHHHHHHc-C--C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 99999999888753 1 1 1233667899999999866443
No 169
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.38 E-value=3.8e-05 Score=79.94 Aligned_cols=108 Identities=22% Similarity=0.151 Sum_probs=81.1
Q ss_pred HHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCccccc-ccccccEEeecccccccc----ccCCcceEEe
Q 048213 365 MEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLG-ELKILEILRLRVNELTRA----GSSQLKHLSV 439 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~-~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l 439 (532)
++-+...+.++++.|.+.++- .+..+++|++|+|++|.++..+.++ .-.+|+.|.+++|.++++ ++++|+.|++
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDL 261 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccch
Confidence 444445568899999987766 6888999999999999988854332 223499999999988887 7889999999
Q ss_pred ccccccCCCCCcccccCCCCCEEecCCccccccc
Q 048213 440 RGLRASAPNPTESEVALPKLETVCLSSINIERIW 473 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp 473 (532)
+.|-..--....+++.|..|+.|.|-||.+-.-|
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9885422223446677888999999999775443
No 170
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.36 E-value=1.1e-05 Score=66.82 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=69.3
Q ss_pred HHhcccCCcccHHHHHhhHHhhhhcccccCCchhh---hccccccEEEeccccccC-cccc-cccccccEEeeccccccc
Q 048213 354 MGLGLFQGIKRMEVARARVVIDLTYMNLLSLPSSL---GLLTNLQTLCLYYCKLQD-TSVL-GELKILEILRLRVNELTR 428 (532)
Q Consensus 354 ~aeg~~~~~~~~~~~~~~~~l~l~~~~l~~lp~~~---~~l~~L~~L~l~~~~l~~-~~~i-~~l~~L~~L~l~~~~l~~ 428 (532)
++.|..+-.++.++..+..+++++.|.+-.++... ....+|...++++|.+++ |+.+ .+.+.+.+|++.+|.+..
T Consensus 12 agrgV~evVercedakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd 91 (177)
T KOG4579|consen 12 AGRGVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD 91 (177)
T ss_pred HhhhHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh
Confidence 55555555566677777778888888776555443 344556666788887776 4333 344566677776666655
Q ss_pred c-----ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCccccccccc
Q 048213 429 A-----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQN 475 (532)
Q Consensus 429 ~-----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~ 475 (532)
+ .++.||.|+++.|.+ ...|..+..|.+|-+|+..+|.+..+|..
T Consensus 92 vPeE~Aam~aLr~lNl~~N~l--~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 92 VPEELAAMPALRSLNLRFNPL--NAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred chHHHhhhHHhhhcccccCcc--ccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 4 345555555555543 33333444455555555555544444444
No 171
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.34 E-value=7.6e-05 Score=71.43 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=70.7
Q ss_pred hHHhhhhcccccC--Cc---hhhhccccccEEEeccccccC---------------cccccccccccEEeecccccccc-
Q 048213 371 RVVIDLTYMNLLS--LP---SSLGLLTNLQTLCLYYCKLQD---------------TSVLGELKILEILRLRVNELTRA- 429 (532)
Q Consensus 371 ~~~l~l~~~~l~~--lp---~~~~~l~~L~~L~l~~~~l~~---------------~~~i~~l~~L~~L~l~~~~l~~~- 429 (532)
...++|++|-+-. ++ .-+..+..|+.|.+.+|.+.. ...+.+-++|+++....|.+..-
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc
Confidence 4577888887632 22 235667888999998886543 11345567888888888866544
Q ss_pred ---------ccCCcceEEeccccccCCCC----CcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCC
Q 048213 430 ---------GSSQLKHLSVRGLRASAPNP----TESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 430 ---------~l~~Lr~L~l~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
..+.|+.+.++.|.+ -++. ...+...++|+.|||..|-++.-....+....+.+++|+.|++++|.
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I-~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGI-RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHHHHHHHhccccceEEEecccc-cCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 345566666665544 1111 12445556666666666644433222222222334556666666654
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.33 E-value=0.0008 Score=57.42 Aligned_cols=68 Identities=29% Similarity=0.181 Sum_probs=42.0
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc----------------------CchhhHHHHHHHHhccCcEE
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE----------------------SESGRARSLCNRLKKEKMIL 185 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~----------------------~~~~~~~~l~~~l~~~k~~L 185 (532)
..+.|+|++|+||||+|+.++....... ......... ........+.+.....+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5789999999999999999998765442 122221110 11112333444444323389
Q ss_pred EEEcCCCCccc
Q 048213 186 VILDNIWENLD 196 (532)
Q Consensus 186 lVlDdv~~~~~ 196 (532)
|++|++.....
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999987644
No 173
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00022 Score=63.29 Aligned_cols=94 Identities=26% Similarity=0.246 Sum_probs=73.7
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc-------ccCCcceEEecccc
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA-------GSSQLKHLSVRGLR 443 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~-------~l~~Lr~L~l~~~~ 443 (532)
.+|+.+|.+..++. +..+++|.+|.+.+|.+.. +.--.-+++|.+|.+.+|++.++ .+|+|++|.+-+|.
T Consensus 46 ~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 46 AIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred eecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 56788887765543 6788999999999999988 33345678899999999998887 78999999999996
Q ss_pred ccC--CCCCcccccCCCCCEEecCCc
Q 048213 444 ASA--PNPTESEVALPKLETVCLSSI 467 (532)
Q Consensus 444 ~~~--~~~~~~~~~l~~L~~L~L~~~ 467 (532)
... .--..-+..+|+|++||+.+-
T Consensus 125 v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 125 VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhcccCceeEEEEecCcceEeehhhh
Confidence 511 112235678999999999886
No 174
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.31 E-value=0.0018 Score=68.36 Aligned_cols=148 Identities=15% Similarity=0.051 Sum_probs=83.9
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc-CCCCEEEEeccCc-hh--------hHHHHHHHHhccCcEEEEEcCCCCc--
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE-KLFDRVIFVEESE-SG--------RARSLCNRLKKEKMILVILDNIWEN-- 194 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~~~~~~~-~~--------~~~~l~~~l~~~k~~LlVlDdv~~~-- 194 (532)
...+.|+|..|+|||.|++++++..... ..+.......... .. ....+.+++. +-=+|+|||+...
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~--~~DLLlIDDIq~l~g 391 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR--EMDILLVDDIQFLED 391 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh--cCCEEEEehhccccC
Confidence 3458999999999999999999976432 1122222111110 01 1112222332 1248999999754
Q ss_pred -ccccc-cccccCC-CCCCeEEEEeecChH--H------hhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHH
Q 048213 195 -LDFHA-VGIPHGD-DHKGCKVLLTARSLD--V------LSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWV 263 (532)
Q Consensus 195 -~~~~~-l~~~~~~-~~~gs~ilvTtr~~~--v------~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~ 263 (532)
+.|.. +...+.. ...|..||+||+... + +...+...-++.+...+.+.-.+++.+++.... ..--+++
T Consensus 392 ke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~-l~l~~eV 470 (617)
T PRK14086 392 KESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-LNAPPEV 470 (617)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC-CCCCHHH
Confidence 22222 2111111 123556888887631 1 011234456889999999999999998876321 1222566
Q ss_pred HHHHHHHcCCchHH
Q 048213 264 AKDVAKKCAGLPVS 277 (532)
Q Consensus 264 ~~~i~~~c~glPLa 277 (532)
.+-|++.+.+..-.
T Consensus 471 i~yLa~r~~rnvR~ 484 (617)
T PRK14086 471 LEFIASRISRNIRE 484 (617)
T ss_pred HHHHHHhccCCHHH
Confidence 77777777655433
No 175
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.29 E-value=0.0066 Score=60.84 Aligned_cols=177 Identities=14% Similarity=0.148 Sum_probs=110.4
Q ss_pred chHHHHHHHHHhcCCCceEEEEEccCCCchHHHH-HHHHHHhhccCCCCEEE----------------------------
Q 048213 111 RMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPA-KEVAIKAENEKLFDRVI---------------------------- 161 (532)
Q Consensus 111 R~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~---------------------------- 161 (532)
|.+..++|..||.+..-..|.|.||-|+||+.|+ .++.++.+..-..||.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~n 80 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMN 80 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHH
Confidence 6678899999999888889999999999999999 77766543221112111
Q ss_pred -------------------EeccCchhhH-------HHHHH-----H--------------Hh--ccCcEEEEEcCCCCc
Q 048213 162 -------------------FVEESESGRA-------RSLCN-----R--------------LK--KEKMILVILDNIWEN 194 (532)
Q Consensus 162 -------------------~~~~~~~~~~-------~~l~~-----~--------------l~--~~k~~LlVlDdv~~~ 194 (532)
|....+.+.. ..|++ + |. -.++=+||+||....
T Consensus 81 Siss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k 160 (431)
T PF10443_consen 81 SISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHK 160 (431)
T ss_pred HHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhcc
Confidence 1111111111 01111 0 00 023568999998654
Q ss_pred c-----------cccccccccCCCCCCeEEEEeecChHHh---hhcCCC--CceEEccCCCHHHHHHHHHHHhCCCCCC-
Q 048213 195 L-----------DFHAVGIPHGDDHKGCKVLLTARSLDVL---SRKMDS--QQDFWVGVLKEDEAWSLFKKMAGDYIEG- 257 (532)
Q Consensus 195 ~-----------~~~~l~~~~~~~~~gs~ilvTtr~~~v~---~~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~- 257 (532)
. +|..... .++-.+||++|-+.... ...++. ...+.|...+++.|......+.......
T Consensus 161 ~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~ 236 (431)
T PF10443_consen 161 AEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDS 236 (431)
T ss_pred CcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccc
Confidence 2 2433211 24556788888775543 223333 3578999999999999999887632110
Q ss_pred ------------------cchHHHHHHHHHHcCCchHHHHHHHHHHc-cCChH
Q 048213 258 ------------------SEFKWVAKDVAKKCAGLPVSIVTVARALR-NKRLF 291 (532)
Q Consensus 258 ------------------~~~~~~~~~i~~~c~glPLai~~~~~~l~-~~~~~ 291 (532)
..........+...||=-.-+..+++.++ +.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 237 SDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred ccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 12344566778889999999999998888 44443
No 176
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0023 Score=68.60 Aligned_cols=169 Identities=20% Similarity=0.151 Sum_probs=105.1
Q ss_pred ccccchHHH---HHHHHHhcCC---------CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eecc---Cch
Q 048213 107 AFESRMSTF---NDILNALKSP---------DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEE---SES 168 (532)
Q Consensus 107 ~~~gR~~~~---~~i~~~l~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~---~~~ 168 (532)
.+.|-++.+ .++++.|.+. -++=+.++|++|.|||-||++++-...+- |=... |.+. ...
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP--F~svSGSEFvE~~~g~~a 389 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSVSGSEFVEMFVGVGA 389 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc--eeeechHHHHHHhcccch
Confidence 455655554 5555555532 35778999999999999999999987765 32222 1111 124
Q ss_pred hhHHHHHHHHhccCcEEEEEcCCCCcc-----------------cccccccccCCCC--CCeEEEEeecChHHhh-hcCC
Q 048213 169 GRARSLCNRLKKEKMILVILDNIWENL-----------------DFHAVGIPHGDDH--KGCKVLLTARSLDVLS-RKMD 228 (532)
Q Consensus 169 ~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~--~gs~ilvTtr~~~v~~-~~~~ 228 (532)
.....+...-+....+.+.+|+++... .++++...+.... .+.-++.+|+..++.. ..+.
T Consensus 390 srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allr 469 (774)
T KOG0731|consen 390 SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLR 469 (774)
T ss_pred HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcC
Confidence 455666666665678899999987431 1233333322222 2334455676666652 1222
Q ss_pred C---CceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 229 S---QQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 229 ~---~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
. ...+.++.-+.....++|.-++.......+..++.+ |+...-|.+=|.
T Consensus 470 pGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 470 PGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 2 347888888889999999999875544445566666 888887776443
No 177
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.27 E-value=0.0024 Score=70.85 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=91.1
Q ss_pred cccccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEE---ec---
Q 048213 104 DYEAFESRMSTFNDILNALKS-------------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIF---VE--- 164 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~~-------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~---~~--- 164 (532)
....+.|.+..+++|.+.+.. ...+.+.++|++|+|||+||+.+++..... |-..-. ..
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~i~i~~~~i~~~~~ 253 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--FISINGPEIMSKYY 253 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--EEEEecHHHhcccc
Confidence 344578999998888776531 234678999999999999999999875432 211100 00
Q ss_pred cCchhhHHHHHHHHhccCcEEEEEcCCCCccc-------------ccccccccCC-CCCCeEEEE-eecChHHhh-hcC-
Q 048213 165 ESESGRARSLCNRLKKEKMILVILDNIWENLD-------------FHAVGIPHGD-DHKGCKVLL-TARSLDVLS-RKM- 227 (532)
Q Consensus 165 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~-~~~gs~ilv-Ttr~~~v~~-~~~- 227 (532)
.........+.+........+|++|+++.... ...+...+.. ...+..+++ ||....-.. ...
T Consensus 254 g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r 333 (733)
T TIGR01243 254 GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRR 333 (733)
T ss_pred cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhC
Confidence 01112334444444444668999999864310 1112111111 122333444 554433211 111
Q ss_pred --CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 228 --DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 228 --~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
.-...+.+...+.++-.+++..+........ ......+++.+.|.-
T Consensus 334 ~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 334 PGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFV 381 (733)
T ss_pred chhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCC
Confidence 1234677888888888888886553221111 112466777777764
No 178
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00012 Score=67.67 Aligned_cols=109 Identities=23% Similarity=0.263 Sum_probs=48.5
Q ss_pred cccccEEEeccccccCcccccccccccEEeeccccccccccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccc
Q 048213 391 LTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRAGSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIE 470 (532)
Q Consensus 391 l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 470 (532)
..+|..|++.++.+.....+..|++|+.|.++.|.. +. ...........|+|++|++++|.|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~----------------~~-~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYR----------------RV-SGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcc----------------cc-cccceehhhhCCceeEEeecCCccc
Confidence 344555555555554444455555555555555522 11 1222222333455666666665443
Q ss_pred cccccccccccccCCCccEEEeccCCCCC--ccchhhhhhcCCCccEEEeec
Q 048213 471 RIWQNQVAAMSCGIQNLKRLILFNCWNLT--CLFTSSIISSFVGLQCLEICE 520 (532)
Q Consensus 471 ~lp~~~~~~~~~~L~~L~~L~L~~c~~l~--~l~p~~~~~~L~~L~~L~l~~ 520 (532)
- ++.+.| ..+|.||.+|++.+|.-.. .- -..++.-+++|.+|+-..
T Consensus 105 ~-lstl~p--l~~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 105 D-LSTLRP--LKELENLKSLDLFNCSVTNLDDY-REKVFLLLPSLKYLDGCD 152 (260)
T ss_pred c-ccccch--hhhhcchhhhhcccCCccccccH-HHHHHHHhhhhccccccc
Confidence 2 122211 1234566666666554322 11 122224556666555433
No 179
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.26 E-value=0.0087 Score=61.96 Aligned_cols=171 Identities=14% Similarity=0.109 Sum_probs=94.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-E-eccC-chh--------hHHHHHHHHhccCcEEEEEcCCCCcc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-F-VEES-ESG--------RARSLCNRLKKEKMILVILDNIWENL 195 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-~-~~~~-~~~--------~~~~l~~~l~~~k~~LlVlDdv~~~~ 195 (532)
...+.|+|..|+|||.|++++++...... ....+ + .... ... ....+.+.+. .+.-+|++||+....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~-~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR-KKVDVLLIDDVQFLI 207 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHH-hcCCEEEEechhhhc
Confidence 45699999999999999999999765321 22222 1 1111 000 1122233332 134589999997431
Q ss_pred ---cc-cccccccCC-CCCCeEEEEeec-ChHHh----hh---cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHH
Q 048213 196 ---DF-HAVGIPHGD-DHKGCKVLLTAR-SLDVL----SR---KMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKW 262 (532)
Q Consensus 196 ---~~-~~l~~~~~~-~~~gs~ilvTtr-~~~v~----~~---~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~ 262 (532)
.+ +.+...+.. ...|..||+||. ...-. .. ......++.+++.+.+.-.+++.+.+.... ..--++
T Consensus 208 ~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~-~~l~~e 286 (440)
T PRK14088 208 GKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH-GELPEE 286 (440)
T ss_pred CcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC-CCCCHH
Confidence 11 122111111 123456888875 32221 11 123345789999999999999998875211 122366
Q ss_pred HHHHHHHHcCCchHHHHHHHH------HHccC--ChHHHHHHHHHh
Q 048213 263 VAKDVAKKCAGLPVSIVTVAR------ALRNK--RLFDWKDALEQL 300 (532)
Q Consensus 263 ~~~~i~~~c~glPLai~~~~~------~l~~~--~~~~w~~~l~~~ 300 (532)
+..-|++.+.|.--.+.-+-. .+.++ +.+....++...
T Consensus 287 v~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 287 VLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 788888888775433322221 12233 777777777655
No 180
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0057 Score=60.19 Aligned_cols=159 Identities=13% Similarity=0.062 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHhhccC--------------------CCCEEEEec-cC---ch
Q 048213 114 TFNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKAENEK--------------------LFDRVIFVE-ES---ES 168 (532)
Q Consensus 114 ~~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~~~~-~~---~~ 168 (532)
..+.+.+.+..+. .....++|+.|+||+++|..++...--.. |=|...... .. ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~i 89 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGV 89 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCH
Confidence 3456666666554 36777999999999999999987532211 111111211 11 12
Q ss_pred hhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecCh-HHhhhcCCCCceEEccCCCHH
Q 048213 169 GRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSL-DVLSRKMDSQQDFWVGVLKED 241 (532)
Q Consensus 169 ~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~-~v~~~~~~~~~~~~l~~L~~~ 241 (532)
+.+..+.+.+. .+++-++|+|+++.. ...+.+...+-.-..++.+|++|.+. .+..........+.+.+++.+
T Consensus 90 d~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~ 169 (325)
T PRK06871 90 DQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQ 169 (325)
T ss_pred HHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHH
Confidence 23334444443 256668889999865 33444433333334456666666654 443333333468899999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 242 EAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 242 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
+..+.+....... ...+...+..++|.|+..
T Consensus 170 ~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 170 QALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 9998888754211 223566788999999633
No 181
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.22 E-value=0.00013 Score=70.90 Aligned_cols=80 Identities=28% Similarity=0.197 Sum_probs=68.9
Q ss_pred hhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccccccCCCCCcccccCCCC
Q 048213 388 LGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRASAPNPTESEVALPKL 459 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L 459 (532)
|..|++|+.|++++|++.. ..++..+..++.|.|..|++..+ ++..|+.|+|.+|++ ..-.|..|..+.+|
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i-t~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI-TTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee-EEEeccccccccee
Confidence 8889999999999999888 45788999999999999988877 788899999999988 66677888888899
Q ss_pred CEEecCCcc
Q 048213 460 ETVCLSSIN 468 (532)
Q Consensus 460 ~~L~L~~~~ 468 (532)
.+|+|-.|.
T Consensus 349 ~~l~l~~Np 357 (498)
T KOG4237|consen 349 STLNLLSNP 357 (498)
T ss_pred eeeehccCc
Confidence 999887764
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.21 E-value=0.0027 Score=67.85 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=41.2
Q ss_pred cccccccccchHHHHHHHHHhcC-----CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 102 NKDYEAFESRMSTFNDILNALKS-----PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~~-----~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
|.....++|.++.++++..|+.. ...+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34466789999999999998873 2346799999999999999999987543
No 183
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.21 E-value=0.0018 Score=71.55 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=85.7
Q ss_pred cccccchHHHHHHHHHhc------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc-Cc-----------
Q 048213 106 EAFESRMSTFNDILNALK------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE-SE----------- 167 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~-~~----------- 167 (532)
...+|.++.+++|++++. .....++.++|++|+||||+|+.++...... |-..-+... +.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~~~i~~~~~~d~~~i~g~~~~~~ 399 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--YVRMALGGVRDEAEIRGHRRTYI 399 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEEEEcCCCCCHHHhccchhccC
Confidence 447899999999998886 1345689999999999999999999764422 321111111 00
Q ss_pred hhhHHHHHHHHhc--cCcEEEEEcCCCCccc------ccccccccC---------------CCCCCeEEEEeecChHHhh
Q 048213 168 SGRARSLCNRLKK--EKMILVILDNIWENLD------FHAVGIPHG---------------DDHKGCKVLLTARSLDVLS 224 (532)
Q Consensus 168 ~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~------~~~l~~~~~---------------~~~~gs~ilvTtr~~~v~~ 224 (532)
......+.+.+.. ..+-+++||.++.... .+.+...+. ..-.+.-+|.|+....+..
T Consensus 400 g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~ 479 (784)
T PRK10787 400 GSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPA 479 (784)
T ss_pred CCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCH
Confidence 0111223333332 1345789999975421 112211111 1123445566666554443
Q ss_pred hcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 225 RKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 225 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
.......++.+.+++.++-.++..++.
T Consensus 480 aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 480 PLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 344455688999999998888877665
No 184
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.21 E-value=0.00014 Score=75.11 Aligned_cols=114 Identities=25% Similarity=0.256 Sum_probs=87.9
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccCccc-ccccccccEEeecccccccc----ccCCcceEEeccccccCC
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSV-LGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRASAP 447 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~-i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~ 447 (532)
.+.+..+.+..+-..++.+.+|..|++..|.+..+.. +..+++|++|++++|.|+.+ .++.|+.|++++|.+
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i--- 152 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLI--- 152 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcc---
Confidence 3345555555444447788999999999999999777 99999999999999999888 667799999999965
Q ss_pred CCCcccccCCCCCEEecCCccccccccc-ccccccccCCCccEEEecc
Q 048213 448 NPTESEVALPKLETVCLSSINIERIWQN-QVAAMSCGIQNLKRLILFN 494 (532)
Q Consensus 448 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~~~~~~L~~L~~L~L~~ 494 (532)
.....+..++.|+.+++++|.++.+... . ..+.+|+.|.+.+
T Consensus 153 ~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~-----~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 153 SDISGLESLKSLKLLDLSYNRIVDIENDEL-----SELISLEELDLGG 195 (414)
T ss_pred hhccCCccchhhhcccCCcchhhhhhhhhh-----hhccchHHHhccC
Confidence 3334455588999999999988877662 1 3457777777775
No 185
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.014 Score=59.33 Aligned_cols=139 Identities=18% Similarity=0.266 Sum_probs=82.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE------EeccCchhhHHHHHHHHhc---cCcEEEEEcCCCCccc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI------FVEESESGRARSLCNRLKK---EKMILVILDNIWENLD 196 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~------~~~~~~~~~~~~l~~~l~~---~k~~LlVlDdv~~~~~ 196 (532)
....+.+.|++|+|||+||..++.... |+.+- ....++......+.+.... ..--.||+||+...-+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD 612 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc
Confidence 456788999999999999999987654 55443 2223444445555544431 3456899999988777
Q ss_pred cccccccc---------------CCCCCCeEEEEeecChHHhhhcCCC----CceEEccCCCH-HHHHHHHHHHhCCCCC
Q 048213 197 FHAVGIPH---------------GDDHKGCKVLLTARSLDVLSRKMDS----QQDFWVGVLKE-DEAWSLFKKMAGDYIE 256 (532)
Q Consensus 197 ~~~l~~~~---------------~~~~~gs~ilvTtr~~~v~~~~~~~----~~~~~l~~L~~-~~~~~Lf~~~~~~~~~ 256 (532)
|-.+...| |..+..--|+-||....+... ++- ...+.++.++. ++..+.+...- ...
T Consensus 613 ~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n--~fs 689 (744)
T KOG0741|consen 613 YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNLTTGEQLLEVLEELN--IFS 689 (744)
T ss_pred ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCccCchHHHHHHHHHcc--CCC
Confidence 76553322 222333334556666777632 222 24678888876 67777776542 111
Q ss_pred CcchHHHHHHHHHHc
Q 048213 257 GSEFKWVAKDVAKKC 271 (532)
Q Consensus 257 ~~~~~~~~~~i~~~c 271 (532)
....+..+.+...+|
T Consensus 690 d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 690 DDEVRAIAEQLLSKK 704 (744)
T ss_pred cchhHHHHHHHhccc
Confidence 223344455555555
No 186
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.15 E-value=0.0014 Score=59.63 Aligned_cols=49 Identities=24% Similarity=0.292 Sum_probs=34.3
Q ss_pred chHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE
Q 048213 111 RMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI 161 (532)
Q Consensus 111 R~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 161 (532)
+..+-...++.+. +..++.+.|++|.|||.||.+.+-+.-..+.|+..+
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kii 53 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKII 53 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 4445556666666 457999999999999999999887766567788777
No 187
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0044 Score=57.29 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=98.1
Q ss_pred ccccccchHHHHH---HHHHhcC------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE------EeccCchh
Q 048213 105 YEAFESRMSTFND---ILNALKS------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI------FVEESESG 169 (532)
Q Consensus 105 ~~~~~gR~~~~~~---i~~~l~~------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~------~~~~~~~~ 169 (532)
...++|.++.+.+ |++.|.+ --++-|..+|++|.|||-+|+++++...+- |-..- -...+...
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~l~vkat~liGehVGdgar 197 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--LLLVKATELIGEHVGDGAR 197 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--eEEechHHHHHHHhhhHHH
Confidence 3456777665543 4555553 246889999999999999999999987654 32111 00112233
Q ss_pred hHHHHHHHHhccCcEEEEEcCCCCc--------------ccccccccccCC--CCCCeEEEEeecChHHhhhcCCC--Cc
Q 048213 170 RARSLCNRLKKEKMILVILDNIWEN--------------LDFHAVGIPHGD--DHKGCKVLLTARSLDVLSRKMDS--QQ 231 (532)
Q Consensus 170 ~~~~l~~~l~~~k~~LlVlDdv~~~--------------~~~~~l~~~~~~--~~~gs~ilvTtr~~~v~~~~~~~--~~ 231 (532)
.+..+.++-.+.-.|.+.+|.++.. +..+++...+.. .+.|..-|..|.+...+.....+ ..
T Consensus 198 ~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEe 277 (368)
T COG1223 198 RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEE 277 (368)
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhh
Confidence 4555666666567899999998743 112223222211 34566677777776665322222 23
Q ss_pred eEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 232 DFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 232 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
-++...-+++|-.+++..++-...-+ .....+.++++.+|+
T Consensus 278 EIEF~LP~~eEr~~ile~y~k~~Plp--v~~~~~~~~~~t~g~ 318 (368)
T COG1223 278 EIEFKLPNDEERLEILEYYAKKFPLP--VDADLRYLAAKTKGM 318 (368)
T ss_pred eeeeeCCChHHHHHHHHHHHHhCCCc--cccCHHHHHHHhCCC
Confidence 56667778888888888887421111 111145566666664
No 188
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.13 E-value=0.0034 Score=55.46 Aligned_cols=129 Identities=17% Similarity=0.087 Sum_probs=74.5
Q ss_pred cchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc-------------------CCCCEEEEeccCc--
Q 048213 110 SRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE-------------------KLFDRVIFVEESE-- 167 (532)
Q Consensus 110 gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~~~~~~~-- 167 (532)
|-++..+.+.+.+..+.. ..+.++|+.|+||+++|..+++..--. .|-|..+......
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 445667777777776665 467999999999999999988753221 2344444433322
Q ss_pred ---hhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChHH-hhhcCCCCceEEccC
Q 048213 168 ---SGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLDV-LSRKMDSQQDFWVGV 237 (532)
Q Consensus 168 ---~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~v-~~~~~~~~~~~~l~~ 237 (532)
.+.+..+.+.+. .+++=++|+||++.. +.++++...+-.-..++.+|++|++..- ..........+.+.+
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence 223334444442 245668999999865 4556665555444567888888887653 332223334555555
Q ss_pred C
Q 048213 238 L 238 (532)
Q Consensus 238 L 238 (532)
+
T Consensus 161 l 161 (162)
T PF13177_consen 161 L 161 (162)
T ss_dssp -
T ss_pred C
Confidence 4
No 189
>PRK07261 topology modulation protein; Provisional
Probab=97.12 E-value=0.00093 Score=59.69 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=39.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhcc-CCCCEEEE----eccCchhhHHHHHHHHhccCcEEEEEcCCCC
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAENE-KLFDRVIF----VEESESGRARSLCNRLKKEKMILVILDNIWE 193 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~~----~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 193 (532)
.|.|+|++|+||||||+.+....... -+.|...+ ...+..+....+.+.+.+ .+ .|+|+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--wIidg~~~ 68 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLK-HD--WIIDGNYS 68 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhC-CC--EEEcCcch
Confidence 58999999999999999998764322 12333332 233344556666666664 44 67787644
No 190
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.12 E-value=0.0008 Score=62.74 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=25.3
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI 161 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 161 (532)
-.++|+|..|+|||||...+......+ |+.+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~ 45 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIF 45 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEE
Confidence 367899999999999999998765443 65555
No 191
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0018 Score=59.74 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=61.3
Q ss_pred cccccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe---c-
Q 048213 102 NKDYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV---E- 164 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~---~- 164 (532)
...+..+-|-.+.+++|.+... -+..+-|.++|++|.|||-+|++|+|+.... |-.++-. +
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--firvigselvqk 250 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--FIRVIGSELVQK 250 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--EEeehhHHHHHH
Confidence 3446667788888888777543 1356778999999999999999999976544 5444311 1
Q ss_pred --cCchhhHHHHHHHHhccCcEEEEEcCCCC
Q 048213 165 --ESESGRARSLCNRLKKEKMILVILDNIWE 193 (532)
Q Consensus 165 --~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 193 (532)
.........+++.-..+|-|+|.+|.++.
T Consensus 251 yvgegarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 251 YVGEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred HhhhhHHHHHHHHHHhcccceEEEEeecccc
Confidence 11122344555555567889999999863
No 192
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.12 E-value=0.0055 Score=68.21 Aligned_cols=143 Identities=22% Similarity=0.171 Sum_probs=79.5
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc-C-----------ch
Q 048213 107 AFESRMSTFNDILNALK------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE-S-----------ES 168 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~-~-----------~~ 168 (532)
.++|.++.+++|.+++. ....+++.++|++|+|||++|+.+++..... |-....... + ..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~~~i~~~~~~~~~~i~g~~~~~~g 398 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--FVRFSLGGVRDEAEIRGHRRTYVG 398 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--eEEEeCCCcccHHHHcCCCCceeC
Confidence 46788888888888664 2234689999999999999999999876432 321110000 0 00
Q ss_pred hhHHHHHHHHh--ccCcEEEEEcCCCCccc------cccccc--------ccCCC-------CCCeEEEEeecChHHh-h
Q 048213 169 GRARSLCNRLK--KEKMILVILDNIWENLD------FHAVGI--------PHGDD-------HKGCKVLLTARSLDVL-S 224 (532)
Q Consensus 169 ~~~~~l~~~l~--~~k~~LlVlDdv~~~~~------~~~l~~--------~~~~~-------~~gs~ilvTtr~~~v~-~ 224 (532)
.....+.+.+. ..++-+++||.++.... ...+.. .|.+. ..+.-+|.||...... .
T Consensus 399 ~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~ 478 (775)
T TIGR00763 399 AMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR 478 (775)
T ss_pred CCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH
Confidence 01112223332 12445889999875421 011111 11111 1234445555543322 2
Q ss_pred hcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 225 RKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 225 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
.......++.+.+++.++-.+++.++.
T Consensus 479 ~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 479 PLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred HHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 223344688999999988888877654
No 193
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.00018 Score=66.52 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=48.1
Q ss_pred hhHHhhhhcccccCCchhhhccccccEEEeccccc--cC--cccccccccccEEeecccccccc-------ccCCcceEE
Q 048213 370 ARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKL--QD--TSVLGELKILEILRLRVNELTRA-------GSSQLKHLS 438 (532)
Q Consensus 370 ~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l--~~--~~~i~~l~~L~~L~l~~~~l~~~-------~l~~Lr~L~ 438 (532)
+..++.+.+..++++. .+-.|++|++|.++.|.. .. ...+.++++|.+|++++|.+..+ .+++|..|+
T Consensus 44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 3345566666554432 255688999999999943 33 33455668888888888877644 445566666
Q ss_pred eccccc
Q 048213 439 VRGLRA 444 (532)
Q Consensus 439 l~~~~~ 444 (532)
+.+|..
T Consensus 123 l~n~~~ 128 (260)
T KOG2739|consen 123 LFNCSV 128 (260)
T ss_pred cccCCc
Confidence 666643
No 194
>PRK08181 transposase; Validated
Probab=97.11 E-value=0.0038 Score=59.83 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=38.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCc---------hhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESE---------SGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~---------~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
.-+.++|++|+|||.||.++.+....+ .+...+...... ......+.+.+. +-=||||||+...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccc
Confidence 569999999999999999998865433 233332111100 011122333333 3459999999643
No 195
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.11 E-value=5.7e-05 Score=62.64 Aligned_cols=105 Identities=16% Similarity=0.068 Sum_probs=85.5
Q ss_pred hccccccEEEeccccccC----cccccccccccEEeecccccccc------ccCCcceEEeccccccCCCCCcccccCCC
Q 048213 389 GLLTNLQTLCLYYCKLQD----TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRASAPNPTESEVALPK 458 (532)
Q Consensus 389 ~~l~~L~~L~l~~~~l~~----~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~ 458 (532)
..-..+..+++++|.+-. +..+.....|...+|++|.+.++ .++.++.|++++|.. .+.|..+..++.
T Consensus 24 edakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei--sdvPeE~Aam~a 101 (177)
T KOG4579|consen 24 EDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI--SDVPEELAAMPA 101 (177)
T ss_pred HHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh--hhchHHHhhhHH
Confidence 344567788899997654 34566667788889999999876 667899999999976 888888999999
Q ss_pred CCEEecCCcccccccccccccccccCCCccEEEeccCCCCCcc
Q 048213 459 LETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCL 501 (532)
Q Consensus 459 L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l 501 (532)
|+.|+++.|.+..+|.-+ +.|.+|-.|+.-+ +....+
T Consensus 102 Lr~lNl~~N~l~~~p~vi-----~~L~~l~~Lds~~-na~~ei 138 (177)
T KOG4579|consen 102 LRSLNLRFNPLNAEPRVI-----APLIKLDMLDSPE-NARAEI 138 (177)
T ss_pred hhhcccccCccccchHHH-----HHHHhHHHhcCCC-CccccC
Confidence 999999999999999888 6678889998876 446667
No 196
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.09 E-value=0.0076 Score=59.33 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=78.3
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-------EeccCchhhHHHHHHHHh-----ccCcEEEEEcCCC
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-------FVEESESGRARSLCNRLK-----KEKMILVILDNIW 192 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-------~~~~~~~~~~~~l~~~l~-----~~k~~LlVlDdv~ 192 (532)
..++.++|||++|.|||.+|+++++..... |=..- +..+ .+..+..+++.-. .++.++|++|+++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~--~i~vsa~eL~sk~vGE-sEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE--PIVMSAGELESENAGE-PGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC--eEEEEHHHhhcCcCCc-HHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 456889999999999999999999987654 31111 1111 1122333332221 2578999999997
Q ss_pred Ccc------c--c------cccccc--------cC------CCCCCeEEEEeecChHHh-hhcCCCC-ceEEccCCCHHH
Q 048213 193 ENL------D--F------HAVGIP--------HG------DDHKGCKVLLTARSLDVL-SRKMDSQ-QDFWVGVLKEDE 242 (532)
Q Consensus 193 ~~~------~--~------~~l~~~--------~~------~~~~gs~ilvTtr~~~v~-~~~~~~~-~~~~l~~L~~~~ 242 (532)
... + . ..+... ++ ....+..||+||...... ....... -.-.+..-+.++
T Consensus 223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~ 302 (413)
T PLN00020 223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 302 (413)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHH
Confidence 431 0 0 011100 11 124566788898776643 1112211 111233455666
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchH
Q 048213 243 AWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV 276 (532)
Q Consensus 243 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 276 (532)
-.++++.+...... + ..-..+|+....|-|+
T Consensus 303 R~eIL~~~~r~~~l-~--~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 303 RIGVVHGIFRDDGV-S--REDVVKLVDTFPGQPL 333 (413)
T ss_pred HHHHHHHHhccCCC-C--HHHHHHHHHcCCCCCc
Confidence 66776655443221 1 2345567776666654
No 197
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=1.9e-05 Score=73.11 Aligned_cols=79 Identities=29% Similarity=0.403 Sum_probs=56.2
Q ss_pred hccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEeccccccCCCCCcccccCCCCCEEec
Q 048213 389 GLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCL 464 (532)
Q Consensus 389 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L 464 (532)
+.+.+.+.|+.-+|.+.++....+++.|++|.|+-|.|+.+ .|++|+.|+|..|.+...+...-+.++|+|++|.|
T Consensus 16 sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34566777788888888887788888888888888887777 67777777777775522223334567777777777
Q ss_pred CCc
Q 048213 465 SSI 467 (532)
Q Consensus 465 ~~~ 467 (532)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 666
No 198
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.07 E-value=0.00082 Score=66.24 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHhcC------CCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 107 AFESRMSTFNDILNALKS------PDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~~------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.++|.++.++++++++.. ..-++++++|++|+||||||..+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 688999999999999872 24588999999999999999999887654
No 199
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.06 E-value=0.0005 Score=57.47 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 200
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.06 E-value=0.0041 Score=64.24 Aligned_cols=144 Identities=8% Similarity=-0.012 Sum_probs=79.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCc-hh--------hHHHHHHHHhccCcEEEEEcCCCCcccc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESE-SG--------RARSLCNRLKKEKMILVILDNIWENLDF 197 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~-~~--------~~~~l~~~l~~~k~~LlVlDdv~~~~~~ 197 (532)
...+.|+|+.|+|||+|++++++..... ............ .. ..+.+++.+. ..-+|++||+......
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~--~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR--NVDALFIEDIEVFSGK 217 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc--cCCEEEEcchhhhcCC
Confidence 3568999999999999999999976532 122222111100 00 1112222222 3348999998764221
Q ss_pred ----cccccccCC-CCCCeEEEEeecCh-HHh-------hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHH
Q 048213 198 ----HAVGIPHGD-DHKGCKVLLTARSL-DVL-------SRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVA 264 (532)
Q Consensus 198 ----~~l~~~~~~-~~~gs~ilvTtr~~-~v~-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~ 264 (532)
+.+...+.. ...|..||+||... .-. ........++.+.+++.++-.+++.+.+.... ..--+++.
T Consensus 218 ~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~-~~l~~evl 296 (445)
T PRK12422 218 GATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS-IRIEETAL 296 (445)
T ss_pred hhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHH
Confidence 112111110 12355688888642 111 11133346889999999999999998775321 11224556
Q ss_pred HHHHHHcCCc
Q 048213 265 KDVAKKCAGL 274 (532)
Q Consensus 265 ~~i~~~c~gl 274 (532)
.-|+..+.+.
T Consensus 297 ~~la~~~~~d 306 (445)
T PRK12422 297 DFLIEALSSN 306 (445)
T ss_pred HHHHHhcCCC
Confidence 6666666643
No 201
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.03 E-value=0.0013 Score=65.73 Aligned_cols=36 Identities=11% Similarity=-0.121 Sum_probs=29.6
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI 161 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 161 (532)
+.-..++|+|++|+|||||++.+++..... +|+..+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v 201 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVEL 201 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEE
Confidence 344789999999999999999999987654 676555
No 202
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0017 Score=68.05 Aligned_cols=145 Identities=17% Similarity=0.076 Sum_probs=85.4
Q ss_pred cccccchHHHHHHHHHhc------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCc-----------h
Q 048213 106 EAFESRMSTFNDILNALK------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESE-----------S 168 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~-----------~ 168 (532)
..-+|.++.+++|++.+. +.+-++++.+|++|+|||++|+.++.....+ .|...+-...+. .
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-FfRfSvGG~tDvAeIkGHRRTYVG 489 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-FFRFSVGGMTDVAEIKGHRRTYVG 489 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-eEEEeccccccHHhhcccceeeec
Confidence 446799999999999886 3456899999999999999999999876443 333332111111 1
Q ss_pred hhHHHHHHHHhc--cCcEEEEEcCCCCcc------------------cccccccccCCC-CCCeEEEEeecChH---Hhh
Q 048213 169 GRARSLCNRLKK--EKMILVILDNIWENL------------------DFHAVGIPHGDD-HKGCKVLLTARSLD---VLS 224 (532)
Q Consensus 169 ~~~~~l~~~l~~--~k~~LlVlDdv~~~~------------------~~~~l~~~~~~~-~~gs~ilvTtr~~~---v~~ 224 (532)
..-.++.+.|+. ..+=|+.+|.|+... |=..|...+.+- --=|+|++...... +..
T Consensus 490 AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~ 569 (906)
T KOG2004|consen 490 AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP 569 (906)
T ss_pred cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCCh
Confidence 123455666652 356799999997431 100110000000 01256654322211 212
Q ss_pred hcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 225 RKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 225 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
-......++++.+-..+|=.++-.++.
T Consensus 570 pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 570 PLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhhhhhheeeccCccHHHHHHHHHHhh
Confidence 234455688888888887777666554
No 203
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0081 Score=60.38 Aligned_cols=171 Identities=16% Similarity=0.077 Sum_probs=93.0
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchh-----------hHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESG-----------RARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~-----------~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
....+.|+|..|.|||-|++++.+...... .+.++....+... ..+..++.. + -=++++||++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~-~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~--~dlllIDDiq~l 187 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANG-PNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-S--LDLLLIDDIQFL 187 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhC-CCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-c--cCeeeechHhHh
Confidence 378999999999999999999999765431 2223322222221 122333333 1 238999999754
Q ss_pred cc---ccc-cccccCC-CCCCeEEEEeecChHHh--------hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchH
Q 048213 195 LD---FHA-VGIPHGD-DHKGCKVLLTARSLDVL--------SRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFK 261 (532)
Q Consensus 195 ~~---~~~-l~~~~~~-~~~gs~ilvTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~ 261 (532)
.. |+. +...|.. ...|-.||+|++...-. .......-++.+.+++.+....++.+.+...... --+
T Consensus 188 ~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~-i~~ 266 (408)
T COG0593 188 AGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIE-IPD 266 (408)
T ss_pred cCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCC-CCH
Confidence 22 222 2222211 12344799998653321 1123344689999999999999999876521111 112
Q ss_pred HHHHHHHHH----cCCchHHHHHHHHHHc--cC--ChHHHHHHHHHhc
Q 048213 262 WVAKDVAKK----CAGLPVSIVTVARALR--NK--RLFDWKDALEQLR 301 (532)
Q Consensus 262 ~~~~~i~~~----c~glPLai~~~~~~l~--~~--~~~~w~~~l~~~~ 301 (532)
++..-|++. ..-+.=|+..+..+-. ++ |.+.-+.+++...
T Consensus 267 ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~ 314 (408)
T COG0593 267 EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLL 314 (408)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhh
Confidence 333333333 2333444433333222 22 6666666666655
No 204
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.018 Score=56.51 Aligned_cols=159 Identities=13% Similarity=0.071 Sum_probs=95.0
Q ss_pred HHHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHhhcc-------------------CCCCEEEEecc--Cc---h
Q 048213 114 TFNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKAENE-------------------KLFDRVIFVEE--SE---S 168 (532)
Q Consensus 114 ~~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~~~~~--~~---~ 168 (532)
..+++.+.+..+. ...+.++|+.|+||+++|..++...--. .|-|....... +. .
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~v 90 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITV 90 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCH
Confidence 4556666665554 4578899999999999999987643211 12222222211 11 1
Q ss_pred hhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceEEccCCCHH
Q 048213 169 GRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDFWVGVLKED 241 (532)
Q Consensus 169 ~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~~l~~L~~~ 241 (532)
+.+..+.+.+. .+++-++|+|++... ...+.+...+-.-..++.+|++|.+ ..+..........+.+.+++.+
T Consensus 91 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~ 170 (319)
T PRK06090 91 EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTA 170 (319)
T ss_pred HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHH
Confidence 22333434442 245568999999865 3445544444332345666655555 4454443444458899999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 242 EAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 242 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
++.+.+...... ....++..++|.|+....+
T Consensus 171 ~~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 171 QAMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH
Confidence 999888653111 1356788999999866544
No 205
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.009 Score=59.29 Aligned_cols=160 Identities=11% Similarity=0.052 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHhhcc--------------------CCCCEEEEeccC-----
Q 048213 113 STFNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKAENE--------------------KLFDRVIFVEES----- 166 (532)
Q Consensus 113 ~~~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~~~~~----- 166 (532)
...+++.+.+..+. ...+.+.|+.|+||+++|..++...--. .|=|......+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSL 88 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccC
Confidence 34566777776554 4677899999999999999987754211 111111111111
Q ss_pred chhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceEEccCCC
Q 048213 167 ESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDFWVGVLK 239 (532)
Q Consensus 167 ~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~~l~~L~ 239 (532)
..+.+..+.+.+. .+++-++|+|+++.. +..+.+...+-.-..++.+|.+|.+ ..+..........+.+.+++
T Consensus 89 ~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~ 168 (334)
T PRK07993 89 GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPP 168 (334)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCC
Confidence 1223344444443 256678999998755 3344443333222345666666655 44443333334578999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 240 EDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 240 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
.+++.+.+....+ ...+.+..++..++|.|...
T Consensus 169 ~~~~~~~L~~~~~------~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 169 EQYALTWLSREVT------MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred HHHHHHHHHHccC------CCHHHHHHHHHHcCCCHHHH
Confidence 9999988865422 11334678899999999643
No 206
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.94 E-value=0.00068 Score=60.90 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=39.7
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc---------CchhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE---------SESGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~---------~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
+..-+.++|..|+|||.||.++.+....+ .+...+.... ........+.+.+. +-=||||||+-..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 34679999999999999999998875543 3444431111 11112233445555 3358899999754
No 207
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.031 Score=58.52 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=88.2
Q ss_pred cccccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-------
Q 048213 102 NKDYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI------- 161 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~------- 161 (532)
...-..+-|-++.+.+|.+... -...+-|..+|++|.|||++|+++++..... |=.+-
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--FlsvkgpEL~sk 507 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--FLSVKGPELFSK 507 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--eeeccCHHHHHH
Confidence 3344556666666666654443 2467889999999999999999999976543 43331
Q ss_pred EeccCchhhHHHHHHHHhccCcEEEEEcCCCCccc-------------ccccccccCCCC--CCeEEEEeecChHHh-hh
Q 048213 162 FVEESESGRARSLCNRLKKEKMILVILDNIWENLD-------------FHAVGIPHGDDH--KGCKVLLTARSLDVL-SR 225 (532)
Q Consensus 162 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~~~--~gs~ilvTtr~~~v~-~~ 225 (532)
|...+ +..+..++++-.+--.++|.||.++...- +..+...+.... ++--||-.|..++.. ..
T Consensus 508 ~vGeS-Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 508 YVGES-ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred hcCch-HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 22222 23445555555545679999999975411 111212221111 233344444444332 22
Q ss_pred cCC---CCceEEccCCCHHHHHHHHHHHhC
Q 048213 226 KMD---SQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 226 ~~~---~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
.+. -...+.++.-+.+.-.++|..++-
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 333 335778888888888899999886
No 208
>PRK08116 hypothetical protein; Validated
Probab=96.91 E-value=0.0014 Score=63.01 Aligned_cols=90 Identities=18% Similarity=0.092 Sum_probs=49.5
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCc------------hhhHHHHHHHHhccCcEEEEEcCCCCc-
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESE------------SGRARSLCNRLKKEKMILVILDNIWEN- 194 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~------------~~~~~~l~~~l~~~k~~LlVlDdv~~~- 194 (532)
..+.++|..|+|||.||.++++....+ .....+...... ......+.+.+.+ - =||||||+...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~-~-dlLviDDlg~e~ 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN-A-DLLILDDLGAER 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC-C-CEEEEecccCCC
Confidence 458899999999999999999987544 233322111100 0111233344442 2 38999999532
Q ss_pred -ccccc--cccccCC-CCCCeEEEEeecCh
Q 048213 195 -LDFHA--VGIPHGD-DHKGCKVLLTARSL 220 (532)
Q Consensus 195 -~~~~~--l~~~~~~-~~~gs~ilvTtr~~ 220 (532)
.+|.. +..-+.. -.+|..+|+||...
T Consensus 192 ~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 192 DTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33432 1111110 12455688888643
No 209
>PRK06696 uridine kinase; Validated
Probab=96.89 E-value=0.0014 Score=61.47 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHhc---CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 110 SRMSTFNDILNALK---SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 110 gR~~~~~~i~~~l~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.|.+.+++|.+.+. .+...+|+|.|.+|+||||+|+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46667777777775 45678999999999999999999988654
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.041 Score=54.64 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhcc---------------------CCCCEEEEecc--------
Q 048213 115 FNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENE---------------------KLFDRVIFVEE-------- 165 (532)
Q Consensus 115 ~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~~~~~~~~-------- 165 (532)
.+++... ...-...+.++|+.|+|||++|..++...--. .|-|...+...
T Consensus 10 ~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~ 88 (342)
T PRK06964 10 WNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPG 88 (342)
T ss_pred HHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccc
Confidence 4444542 33445678899999999999999988643211 11122211111
Q ss_pred -----------------------CchhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEe
Q 048213 166 -----------------------SESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLT 216 (532)
Q Consensus 166 -----------------------~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvT 216 (532)
-..+.+..+.+.+. .+++-++|+|+++.. ..++.+...+-.-.+++.+|.+
T Consensus 89 ~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~ 168 (342)
T PRK06964 89 AADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLV 168 (342)
T ss_pred cccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEE
Confidence 01122334444443 245568889999865 3455554444333455655555
Q ss_pred ecC-hHHhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 217 ARS-LDVLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 217 tr~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
|.+ ..+..........+.+.+++.++..+.+... + . +. ...++..++|.|+....+
T Consensus 169 t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~-~---~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 169 SARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G-V---AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C-C---Ch----HHHHHHHcCCCHHHHHHH
Confidence 544 4444433333468899999999999888764 1 1 11 223577889999754433
No 211
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0085 Score=61.90 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=79.8
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-------EeccCchhhHHHHHHHHhccCcEEEEEcCCCCcc---
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-------FVEESESGRARSLCNRLKKEKMILVILDNIWENL--- 195 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-------~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--- 195 (532)
...-|.++|++|+|||-||++|+|..... |-.+- +..+ .+..+..++++-...-.|.|.+|.++...
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N--FisVKGPELlNkYVGE-SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R 620 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN--FISVKGPELLNKYVGE-SERAVRQVFQRARASAPCVIFFDEIDALVPRR 620 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc--eEeecCHHHHHHHhhh-HHHHHHHHHHHhhcCCCeEEEecchhhcCccc
Confidence 35668899999999999999999987654 53332 1111 12234556666665689999999997541
Q ss_pred ----c------ccccccccCC--CCCCeEEEEeecChHHh-hhcCCC---CceEEccCCCHHHHHHHHHHHhC
Q 048213 196 ----D------FHAVGIPHGD--DHKGCKVLLTARSLDVL-SRKMDS---QQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 196 ----~------~~~l~~~~~~--~~~gs~ilvTtr~~~v~-~~~~~~---~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
. .+.+...+.. ...|.-||-.|...++. ...... .....++.-+.+|-.++++...-
T Consensus 621 ~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 621 SDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred CCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 1 2223223322 23566778777766654 112222 34677888888999999988776
No 212
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0021 Score=65.11 Aligned_cols=83 Identities=24% Similarity=0.209 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcCC---------CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-EeccCch---hhHHHHHHHH
Q 048213 112 MSTFNDILNALKSP---------DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-FVEESES---GRARSLCNRL 178 (532)
Q Consensus 112 ~~~~~~i~~~l~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-~~~~~~~---~~~~~l~~~l 178 (532)
.+++++|++.|.+. =++-|.++|++|.|||-||++++-...+-..|-..- |++.-.. ..+..++..-
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aA 392 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAA 392 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHH
Confidence 56778888888743 256789999999999999999999877762221111 3333222 2344555555
Q ss_pred hccCcEEEEEcCCCCc
Q 048213 179 KKEKMILVILDNIWEN 194 (532)
Q Consensus 179 ~~~k~~LlVlDdv~~~ 194 (532)
+..-.|.|.+|.++..
T Consensus 393 k~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 393 KARAPCIIFIDEIDAV 408 (752)
T ss_pred HhcCCeEEEEechhhh
Confidence 5457899999999754
No 213
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.86 E-value=0.003 Score=64.74 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=41.5
Q ss_pred cccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCC
Q 048213 106 EAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFD 158 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 158 (532)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 47899999999999888766 4678999999999999999998654333444
No 214
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.00027 Score=66.33 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=79.4
Q ss_pred hHHhhhhcccccCCc---hhhhccccccEEEeccccccC-cccc-cccccccEEeecccccccc-------ccCCcceEE
Q 048213 371 RVVIDLTYMNLLSLP---SSLGLLTNLQTLCLYYCKLQD-TSVL-GELKILEILRLRVNELTRA-------GSSQLKHLS 438 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp---~~~~~l~~L~~L~l~~~~l~~-~~~i-~~l~~L~~L~l~~~~l~~~-------~l~~Lr~L~ 438 (532)
.+.+|+.+|.++... .-+.+|++|++|+++.|.+.. +... -.+.+|++|-|.|+.+.-- .+|.++.|+
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 367788888876543 234678888888888887765 3333 3566888888888755432 566667777
Q ss_pred eccccc-cCCCCCcccccC-CCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEE
Q 048213 439 VRGLRA-SAPNPTESEVAL-PKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCL 516 (532)
Q Consensus 439 l~~~~~-~~~~~~~~~~~l-~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L 516 (532)
++.|++ +....-...... +.+++|.+.+|... .|.++.... -.++|+..+-+..|+ +++.....-...++.+-.|
T Consensus 153 mS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-~w~~~~~l~-r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 153 MSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-LWLNKNKLS-RIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hccchhhhhccccccccccchhhhhhhcCCcHHH-HHHHHHhHH-hhcccchheeeecCc-ccchhhcccCCCCCcchhh
Confidence 776633 011111112222 24555555555221 222220000 123777777777776 4444222111445555555
Q ss_pred Eeec
Q 048213 517 EICE 520 (532)
Q Consensus 517 ~l~~ 520 (532)
+|+.
T Consensus 230 nL~~ 233 (418)
T KOG2982|consen 230 NLGA 233 (418)
T ss_pred hhcc
Confidence 5543
No 215
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0033 Score=66.45 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=66.3
Q ss_pred ccccccccccchHHHHHHHHHhc---------CCC---ceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE------E
Q 048213 101 SNKDYEAFESRMSTFNDILNALK---------SPD---VNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI------F 162 (532)
Q Consensus 101 ~~~~~~~~~gR~~~~~~i~~~l~---------~~~---~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~------~ 162 (532)
|.+.-..+-|-++.+.+|.+.+. ..+ ..-|.++|++|.|||-+|++|+-..... |=.+- .
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~--FlSVKGPELLNM 744 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELLNM 744 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee--EEeecCHHHHHH
Confidence 34445677889999999998775 222 4568899999999999999999875543 32221 1
Q ss_pred eccCchhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 163 VEESESGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 163 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
.....++....++++-++.+.|.|.+|.+++.
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 12233455677778777789999999999864
No 216
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.022 Score=57.11 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=83.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhc-cCcEEEEEcCCCCccc----------
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKK-EKMILVILDNIWENLD---------- 196 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~---------- 196 (532)
|--.++||+|.|||++..++++... ||..-..-.+.....+ +++-|.. ..+-+||+.|++-.-+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~n~d-Lr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~ 310 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKLDSD-LRHLLLATPNKSILLIEDIDCSFDLRERRKKKKE 310 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccCcHH-HHHHHHhCCCCcEEEEeecccccccccccccccc
Confidence 5568999999999999999999765 5555433322222222 4444432 3567888999874311
Q ss_pred -cc-------------ccccccCCCCCCeEEE-EeecChHHh-hhcCCCC---ceEEccCCCHHHHHHHHHHHhCCCCCC
Q 048213 197 -FH-------------AVGIPHGDDHKGCKVL-LTARSLDVL-SRKMDSQ---QDFWVGVLKEDEAWSLFKKMAGDYIEG 257 (532)
Q Consensus 197 -~~-------------~l~~~~~~~~~gs~il-vTtr~~~v~-~~~~~~~---~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 257 (532)
.+ .+...+...+ +-||| .||....-+ +..+... ..+.+.--+.+....|+..+.+...+
T Consensus 311 ~~~~~~~~VTlSGLLNfiDGlwSscg-~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~- 388 (457)
T KOG0743|consen 311 NFEGDLSRVTLSGLLNFLDGLWSSCG-DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED- 388 (457)
T ss_pred cccCCcceeehHHhhhhhccccccCC-CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC-
Confidence 11 1111111111 23555 566655433 1122222 35778888899999999998874332
Q ss_pred cchHHHHHHHHHHcCCchHHHHHHHHHH-ccC
Q 048213 258 SEFKWVAKDVAKKCAGLPVSIVTVARAL-RNK 288 (532)
Q Consensus 258 ~~~~~~~~~i~~~c~glPLai~~~~~~l-~~~ 288 (532)
..+..+|.+.-.|.-++=..++..| .++
T Consensus 389 ---h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 389 ---HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred ---cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 2344455554455444434444444 344
No 217
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.81 E-value=0.016 Score=55.60 Aligned_cols=37 Identities=35% Similarity=0.253 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 113 STFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 113 ~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++++..++..+ .-|.+.|++|+|||++|+.+++..
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3455555555544 456689999999999999998743
No 218
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.77 E-value=0.0037 Score=69.86 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=55.1
Q ss_pred cccccchHHHHHHHHHhc---------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE----Eecc-C-----
Q 048213 106 EAFESRMSTFNDILNALK---------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI----FVEE-S----- 166 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~---------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~----~~~~-~----- 166 (532)
..++|-+..++.+.+.+. .....++.++|+.|+|||.||+.++........+-..+ +... +
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 457899999999888874 12345789999999999999999887643211110111 0000 0
Q ss_pred -------chhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 167 -------ESGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 167 -------~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
..+....+.+.+......+|+||++...
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEEechhhc
Confidence 0001123555666556789999999643
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0071 Score=65.38 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=89.5
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC-----CCCEEE-----------EeccCch
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-----LFDRVI-----------FVEESES 168 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-----~F~~~~-----------~~~~~~~ 168 (532)
....+||++++.++++.|....-.--.++|.+|+|||++|.-++.+.-..+ .....+ -.....+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFE 248 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFE 248 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHH
Confidence 456889999999999999843333345789999999998877776532211 011111 1112334
Q ss_pred hhHHHHHHHHhccCcEEEEEcCCCCcc--------cccc---cccccCCCCCCeEEEEeecChHH--h---hhcCCCCce
Q 048213 169 GRARSLCNRLKKEKMILVILDNIWENL--------DFHA---VGIPHGDDHKGCKVLLTARSLDV--L---SRKMDSQQD 232 (532)
Q Consensus 169 ~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~~~~---l~~~~~~~~~gs~ilvTtr~~~v--~---~~~~~~~~~ 232 (532)
+....+.+.+.+.++..|++|.++..- ..++ +++++ ..+.--.|-.||-++.- . .........
T Consensus 249 eRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-ARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~ 327 (786)
T COG0542 249 ERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-ARGELRCIGATTLDEYRKYIEKDAALERRFQK 327 (786)
T ss_pred HHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-hcCCeEEEEeccHHHHHHHhhhchHHHhcCce
Confidence 455666666665568999999987531 1222 23332 22333346677766542 1 012233467
Q ss_pred EEccCCCHHHHHHHHHHHh
Q 048213 233 FWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~~ 251 (532)
+.+...+.+++...++...
T Consensus 328 V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 328 VLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred eeCCCCCHHHHHHHHHHHH
Confidence 8899999999999887644
No 220
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.0039 Score=59.41 Aligned_cols=66 Identities=21% Similarity=0.179 Sum_probs=43.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCc----------hhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESE----------SGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~----------~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
...-+.++|.+|+|||.||.++.+... +..+...++...+. ......+.+.+. +-=||||||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 567899999999999999999999987 55566555222211 112223333333 2348999999754
No 221
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.73 E-value=0.0095 Score=65.95 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=52.9
Q ss_pred ccccchHHHHHHHHHhcC---------CCceEEEEEccCCCchHHHHHHHHHHhhcc-CCCCEEEEec-----------c
Q 048213 107 AFESRMSTFNDILNALKS---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENE-KLFDRVIFVE-----------E 165 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~~~~-----------~ 165 (532)
.++|-+..++.+.+.+.. ....++.++|+.|+|||.||+.++...... -.|+..-+.. .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~ 534 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPP 534 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCC
Confidence 467777778887777651 123467899999999999999998865311 0011000000 0
Q ss_pred C--chhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 166 S--ESGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 166 ~--~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
. ..+....+.+.+......+++||+++..
T Consensus 535 gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 535 GYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred CCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 0 0011234555555445679999999754
No 222
>PRK09183 transposase/IS protein; Provisional
Probab=96.70 E-value=0.0012 Score=63.29 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+.|+|++|+|||+||..+......
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999876443
No 223
>PRK06526 transposase; Provisional
Probab=96.70 E-value=0.00081 Score=63.97 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+.++|++|+|||+||..+......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 457899999999999999999876543
No 224
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.69 E-value=0.0024 Score=62.58 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHhcC----CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCc---------hhhHHHHHH
Q 048213 110 SRMSTFNDILNALKS----PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESE---------SGRARSLCN 176 (532)
Q Consensus 110 gR~~~~~~i~~~l~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~---------~~~~~~l~~ 176 (532)
+|........+++.. ...+-+.|+|..|+|||.||.++++....+ .+...+...... ........+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~ 213 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVSSTLLHFPEFIRELKNSISDGSVKEKID 213 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEEHHHHHHHHHHHHhcCcHHHHHH
Confidence 444444444555541 245679999999999999999999987633 344443211110 001122233
Q ss_pred HHhccCcEEEEEcCCCCc--ccccc--ccccc-CCC-CCCeEEEEeecC
Q 048213 177 RLKKEKMILVILDNIWEN--LDFHA--VGIPH-GDD-HKGCKVLLTARS 219 (532)
Q Consensus 177 ~l~~~k~~LlVlDdv~~~--~~~~~--l~~~~-~~~-~~gs~ilvTtr~ 219 (532)
.+. +-=||||||+... ..|.. +...+ ... ..+-.+|+||.-
T Consensus 214 ~l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 214 AVK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred Hhc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 333 4458999999654 34543 32222 111 133446677653
No 225
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.69 E-value=0.00099 Score=57.22 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=58.0
Q ss_pred ccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhhcc-CCCCEEEEeccCchhhHHHHHHHHhccCcEE
Q 048213 109 ESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAENE-KLFDRVIFVEESESGRARSLCNRLKKEKMIL 185 (532)
Q Consensus 109 ~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~L 185 (532)
+|+...++++.+.+. ...-..|.|.|..|+||+++|+.++...... ..|... +.......+.+. .+.--
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~-----~~~~~~~~~l~~---a~~gt 72 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI-----DCASLPAELLEQ---AKGGT 72 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC-----CHHCTCHHHHHH---CTTSE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe-----chhhCcHHHHHH---cCCCE
Confidence 466666777776665 2334667899999999999999998865432 223221 111111222222 24556
Q ss_pred EEEcCCCCcc--cccccccccC-CCCCCeEEEEeecCh
Q 048213 186 VILDNIWENL--DFHAVGIPHG-DDHKGCKVLLTARSL 220 (532)
Q Consensus 186 lVlDdv~~~~--~~~~l~~~~~-~~~~gs~ilvTtr~~ 220 (532)
|+++|+.... ....+...+. ......|+|.||...
T Consensus 73 L~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 73 LYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp EEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred EEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 8899998663 2222322222 124577999998854
No 226
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.68 E-value=0.019 Score=52.62 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=66.7
Q ss_pred cccccccccchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHH
Q 048213 102 NKDYEAFESRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNR 177 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~ 177 (532)
+.+...++|-+...+.+++=-. .....-|.+||--|.||++|++++.+....+ .-..+-...+.-.....+.+.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glrLVEV~k~dl~~Lp~l~~~ 133 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLRLVEVDKEDLATLPDLVEL 133 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCeEEEEcHHHHhhHHHHHHH
Confidence 3445678888887777765322 3455678999999999999999999886654 222222222233345566666
Q ss_pred Hhc-cCcEEEEEcCCCCc---cccccccccc
Q 048213 178 LKK-EKMILVILDNIWEN---LDFHAVGIPH 204 (532)
Q Consensus 178 l~~-~k~~LlVlDdv~~~---~~~~~l~~~~ 204 (532)
|+. ..||.|..||..-+ +.++.++..+
T Consensus 134 Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 134 LRARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred HhcCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 653 57899999998744 3455555554
No 227
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.038 Score=58.51 Aligned_cols=125 Identities=22% Similarity=0.241 Sum_probs=75.4
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-------EeccCchhhHHHHHHHHhccCcEEEEEcCCCCccccc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-------FVEESESGRARSLCNRLKKEKMILVILDNIWENLDFH 198 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-------~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~ 198 (532)
..+.+.++|++|.|||.||+++++..... |-... |...+ ...+..++..-.....+.|.+|+++....+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~v~~~~l~sk~vGes-ek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r 351 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FISVKGSELLSKWVGES-EKNIRELFEKARKLAPSIIFIDEIDSLASGR 351 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEEeeCHHHhccccchH-HHHHHHHHHHHHcCCCcEEEEEchhhhhccC
Confidence 45689999999999999999999955433 43333 11111 2233344443343578999999997542211
Q ss_pred -------------ccccccC--CCCCCeEEEEeecChHHhhh-cC---CCCceEEccCCCHHHHHHHHHHHhCC
Q 048213 199 -------------AVGIPHG--DDHKGCKVLLTARSLDVLSR-KM---DSQQDFWVGVLKEDEAWSLFKKMAGD 253 (532)
Q Consensus 199 -------------~l~~~~~--~~~~gs~ilvTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~ 253 (532)
.+...+. ....+..||-||........ .. .-...+.+.+-+.++..+.|..+...
T Consensus 352 ~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 352 GPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred CCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 1222222 12234445556655444321 11 22357888999999999999998863
No 228
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.67 E-value=0.0067 Score=58.91 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=39.4
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHH-HhhccCCCCEEE
Q 048213 108 FESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAI-KAENEKLFDRVI 161 (532)
Q Consensus 108 ~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~-~~~~~~~F~~~~ 161 (532)
+-+|..+-.--+++|.++++..|.+.|.+|.|||.||.++.= ..-.++.|+..+
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 445666666667888899999999999999999998876542 233344566555
No 229
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.0025 Score=60.01 Aligned_cols=65 Identities=31% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHhhHHhhhhcccccCCchhh-hccccccEEEeccccccC---cccccccccccEEeecccccccc
Q 048213 365 MEVARARVVIDLTYMNLLSLPSSL-GLLTNLQTLCLYYCKLQD---TSVLGELKILEILRLRVNELTRA 429 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~~ 429 (532)
++.+...++++++.|++.+.-.+. -.+.||++|-+.+..+.. -+.+..+|.++.|.++.|++..+
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~ 161 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQL 161 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhh
Confidence 445555588999999886532222 467899999999998876 35677888899998888854443
No 230
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0057 Score=54.00 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...+.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678999999999999999999987
No 231
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.05 Score=54.75 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=101.7
Q ss_pred cccccccchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHhhcc-CCCCEEEEecc-------------
Q 048213 104 DYEAFESRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENE-KLFDRVIFVEE------------- 165 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~~~~~------------- 165 (532)
.+....||+.++..+.+++. .+....+.|.|-+|.|||.+...++.+.... ..|..+.....
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 35678999999999999887 3456789999999999999999888865432 11221111111
Q ss_pred -----------CchhhHHHHHHHHhccC-cEEEEEcCCCCccc--ccccc--cccCCCCCCeEEEEe---------ecCh
Q 048213 166 -----------SESGRARSLCNRLKKEK-MILVILDNIWENLD--FHAVG--IPHGDDHKGCKVLLT---------ARSL 220 (532)
Q Consensus 166 -----------~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~--~~~l~--~~~~~~~~gs~ilvT---------tr~~ 220 (532)
...+....+.++..+.+ -+|+|+|..+.... -..+- ..|+ .-+++++|+- -|.-
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp-~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP-KLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc-cCCcceeeeeeehhhhhHHHHHh
Confidence 11222344555555434 78999999875421 01111 1122 2234554432 2211
Q ss_pred HHhhh-cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchH----HHHHHHHHHcCCchHHHHHHHHHH
Q 048213 221 DVLSR-KMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFK----WVAKDVAKKCAGLPVSIVTVARAL 285 (532)
Q Consensus 221 ~v~~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~----~~~~~i~~~c~glPLai~~~~~~l 285 (532)
.-... ..-....+...|-+.++-.++|.............. -.|++++...|-+--|+.+.-+.+
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11110 112234677889999999999998876333333222 233444444444555555554443
No 232
>PRK12377 putative replication protein; Provisional
Probab=96.57 E-value=0.0055 Score=57.93 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=25.0
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
+...+.++|..|+|||.||.++++....+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34689999999999999999999987644
No 233
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.53 E-value=0.014 Score=63.36 Aligned_cols=124 Identities=21% Similarity=0.220 Sum_probs=70.5
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eec---cCchhhHHHHHHHHhccCcEEEEEcCCCCccc-----
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVE---ESESGRARSLCNRLKKEKMILVILDNIWENLD----- 196 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~---~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----- 196 (532)
+-|.++|++|+|||++|+.+++...+. |-..- +.. .........+.+.......++|++|+++....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~ 263 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 263 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--EEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC
Confidence 458999999999999999998876543 32111 000 01111223333333334678999999975410
Q ss_pred -----------ccccccccCC--CCCCeEEEEeecChHHhh-hcC---CCCceEEccCCCHHHHHHHHHHHhCC
Q 048213 197 -----------FHAVGIPHGD--DHKGCKVLLTARSLDVLS-RKM---DSQQDFWVGVLKEDEAWSLFKKMAGD 253 (532)
Q Consensus 197 -----------~~~l~~~~~~--~~~gs~ilvTtr~~~v~~-~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~ 253 (532)
...+...+.. ...+.-+|.||....... ... .....+.+...+.++-.+++..+...
T Consensus 264 ~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 264 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 1111111111 123455666777665432 111 22357788888888888888887653
No 234
>PRK06547 hypothetical protein; Provisional
Probab=96.53 E-value=0.0038 Score=55.64 Aligned_cols=36 Identities=28% Similarity=0.159 Sum_probs=29.2
Q ss_pred HHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 117 DILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 117 ~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+...+......+|+|.|++|+||||+|..+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445567788999999999999999999988643
No 235
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.51 E-value=0.095 Score=49.22 Aligned_cols=215 Identities=15% Similarity=0.107 Sum_probs=114.6
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE----Ee-------------------
Q 048213 107 AFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI----FV------------------- 163 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~----~~------------------- 163 (532)
.+.++++....+......++.+-..++|++|.||-|.+..+.+....-+--...+ |.
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 4566777777777765567789999999999999998888777543211111111 00
Q ss_pred -ccCch-----hhHHHHHHHHhc--------cCcE-EEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChH--Hhh
Q 048213 164 -EESES-----GRARSLCNRLKK--------EKMI-LVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLD--VLS 224 (532)
Q Consensus 164 -~~~~~-----~~~~~l~~~l~~--------~k~~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~--v~~ 224 (532)
..+.. ..++.+.+...+ .+.| ++|+-.+++. +.-.+++.....-.+.+|+|+...+-. +.+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIep 173 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEP 173 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhH
Confidence 00110 112222222221 2444 5666666543 222233322222245677776443322 211
Q ss_pred hcCCCCceEEccCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHcCCch-HHHHHHHHHHc-------c-C--ChHH
Q 048213 225 RKMDSQQDFWVGVLKEDEAWSLFKKMAGDY-IEGSEFKWVAKDVAKKCAGLP-VSIVTVARALR-------N-K--RLFD 292 (532)
Q Consensus 225 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l~-------~-~--~~~~ 292 (532)
.....-.+++...+++|-...+.+.+-.. -..+ .+++.+|+++++|.- -||-++-..-. + . +..+
T Consensus 174 -IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~d 250 (351)
T KOG2035|consen 174 -IRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPD 250 (351)
T ss_pred -HhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCcc
Confidence 11122367899999999999998876522 1122 788999999998864 34433322111 1 1 4668
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHhhcCCC
Q 048213 293 WKDALEQLRWPSSTNFKDIQPTAYKAIELSYVKL 326 (532)
Q Consensus 293 w~~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L 326 (532)
|.-++.+.......+. ....+..+-..-|+-|
T Consensus 251 We~~i~e~a~~i~~eQ--s~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 251 WEIYIQEIARVILKEQ--SPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHH
Confidence 9888877653221111 1334444444445433
No 236
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.50 E-value=0.04 Score=53.10 Aligned_cols=147 Identities=19% Similarity=0.118 Sum_probs=86.0
Q ss_pred ccccccchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHh-hccCCCCEEE------------------
Q 048213 105 YEAFESRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKA-ENEKLFDRVI------------------ 161 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~------------------ 161 (532)
...++|-.++...+-.++. .++..-|.|+|+.|+|||+|...+..+. +..++|=.+-
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 3467788888888887776 4566788999999999999988877762 2222332111
Q ss_pred ---------EeccCchhhHHHHHHHHhc-----cCcEEEEEcCCCCccc-------ccccccccCCCCCCeEEEEeecCh
Q 048213 162 ---------FVEESESGRARSLCNRLKK-----EKMILVILDNIWENLD-------FHAVGIPHGDDHKGCKVLLTARSL 220 (532)
Q Consensus 162 ---------~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~ilvTtr~~ 220 (532)
....+..+....+...|+. +..+..|+|.++--.. ++-+...-....+-|-|.+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 1111223334455555542 3447888888764311 122222222234567778999965
Q ss_pred HHh------hhcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 221 DVL------SRKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 221 ~v~------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
..- +.......++-+..++-++...++++-.
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 432 1112222356666777777777777655
No 237
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.49 E-value=0.0035 Score=65.22 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 107 AFESRMSTFNDILNALK------SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.++|.++.+++|++.|. +..-+++.++|++|+||||||+.+++-.+.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 57899999999999983 556689999999999999999999886543
No 238
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.012 Score=54.06 Aligned_cols=89 Identities=24% Similarity=0.265 Sum_probs=58.7
Q ss_pred cccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eecc--
Q 048213 104 DYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEE-- 165 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~-- 165 (532)
.+..+-|.+-.+++|.+... -+.++-|.++|++|.|||-||++|+++.... |-.+. |.+.
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~--firvvgsefvqkyl 230 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--FIRVVGSEFVQKYL 230 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--eeeeccHHHHHHHh
Confidence 34556777777777776653 2467889999999999999999999987654 54443 1111
Q ss_pred -CchhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 166 -SESGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 166 -~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
........+++.-+++-...|.+|.++..
T Consensus 231 gegprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred ccCcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 11223344444444556788999998743
No 239
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.46 E-value=0.00063 Score=65.29 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=83.0
Q ss_pred hhccccccEEEeccccccC-c-----ccccccccccEEeecccccccc----------ccCCcceEEeccccccCCC---
Q 048213 388 LGLLTNLQTLCLYYCKLQD-T-----SVLGELKILEILRLRVNELTRA----------GSSQLKHLSVRGLRASAPN--- 448 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~~l~~-~-----~~i~~l~~L~~L~l~~~~l~~~----------~l~~Lr~L~l~~~~~~~~~--- 448 (532)
+..-++||++...+|.+.+ + ..+...+.|+.+.+..|.|..- .+++|+.|+|.+|.+ ...
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf-t~egs~ 231 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF-TLEGSV 231 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh-hhHHHH
Confidence 3445678888888887766 1 2456667888888887765543 678888888888866 221
Q ss_pred -CCcccccCCCCCEEecCCccccccccc-ccccccccCCCccEEEeccCCCCCc-----cchhhhhhcCCCccEEEeecC
Q 048213 449 -PTESEVALPKLETVCLSSINIERIWQN-QVAAMSCGIQNLKRLILFNCWNLTC-----LFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 449 -~~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~~~~~~L~~L~~L~L~~c~~l~~-----l~p~~~~~~L~~L~~L~l~~c 521 (532)
....+..+++|+.|+++.|.++.-... +.....-..++|++|.|.+|. ++. + ...+ ...+.|..|+|++|
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~l-a~~~-~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALAL-AACM-AEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHH-HHHH-hcchhhHHhcCCcc
Confidence 123456778888888888876632111 000001124788888888755 321 1 2223 45788888888887
Q ss_pred Cc
Q 048213 522 PV 523 (532)
Q Consensus 522 ~~ 523 (532)
..
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 63
No 240
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.42 E-value=0.0052 Score=58.52 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.1
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
.-..++|+|.+|.||||||..+++....+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~ 96 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA 96 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc
Confidence 34789999999999999999999987654
No 241
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.07 Score=52.79 Aligned_cols=142 Identities=16% Similarity=0.100 Sum_probs=76.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc---------------------CCCCEEEEeccC------------chhhHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE---------------------KLFDRVIFVEES------------ESGRARS 173 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~~~~~~~~~------------~~~~~~~ 173 (532)
...+.++|+.|+||||+|..++...--. .|-|.......+ ..+.+..
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 4568899999999999999998763210 112222222211 1122333
Q ss_pred HHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEEccCCCHHHHHHH
Q 048213 174 LCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFWVGVLKEDEAWSL 246 (532)
Q Consensus 174 l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~L 246 (532)
+.+.+. .+++-++|+|++...+ .-+.+...+..-..++.+|++|.+.. +..........+.+.+++.+++.+.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~ 180 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAY 180 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHH
Confidence 444443 1344455668877542 22222222211123455666776654 4332233345788999999999888
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHcCCchHH
Q 048213 247 FKKMAGDYIEGSEFKWVAKDVAKKCAGLPVS 277 (532)
Q Consensus 247 f~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 277 (532)
+... + . .. .. ..+..++|-|+.
T Consensus 181 L~~~-~-~---~~-~~---~~l~~~~g~p~~ 202 (325)
T PRK08699 181 LRER-G-V---AE-PE---ERLAFHSGAPLF 202 (325)
T ss_pred HHhc-C-C---Cc-HH---HHHHHhCCChhh
Confidence 8653 1 1 11 11 123568898864
No 242
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.38 E-value=0.036 Score=53.23 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=84.8
Q ss_pred HHHHHHHHHhc---CCCceEEEEEccCCCchHHHHHHHHHHhhccC-----CCCEEE-----------------------
Q 048213 113 STFNDILNALK---SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-----LFDRVI----------------------- 161 (532)
Q Consensus 113 ~~~~~i~~~l~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-----~F~~~~----------------------- 161 (532)
+.++++.+.+. ....+-+.|||.+|+|||++++.+.+...... .++...
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 33445445444 44567899999999999999999987654331 122222
Q ss_pred E-eccCchhhHHHHHHHHhccCcEEEEEcCCCCcc---------cccccccccCCCCCCeEEEEeecChHHhhh----cC
Q 048213 162 F-VEESESGRARSLCNRLKKEKMILVILDNIWENL---------DFHAVGIPHGDDHKGCKVLLTARSLDVLSR----KM 227 (532)
Q Consensus 162 ~-~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~ilvTtr~~~v~~~----~~ 227 (532)
+ ...+.........+.+..-+--+||+|++.+.- ..+.+ ..+...-.-+-|.|-|+.-.-+-. ..
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 0 011112222333344443344589999998741 11111 112112223445566654333210 00
Q ss_pred CCCceEEccCCC-HHHHHHHHHHHhC----CCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 228 DSQQDFWVGVLK-EDEAWSLFKKMAG----DYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 228 ~~~~~~~l~~L~-~~~~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
.....+.+..-. .++...|+..... .....-...++++.|...++|+.=-+
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 112344444433 3455566554332 12222334788999999999986433
No 243
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.38 E-value=0.0041 Score=57.77 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=21.6
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++|+|.|-||+||||++..++.....
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 57899999999999999888765543
No 244
>PRK07667 uridine kinase; Provisional
Probab=96.38 E-value=0.0049 Score=56.28 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=29.3
Q ss_pred HHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 115 FNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 115 ~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+.|.+.+. .+...+|+|.|.+|+||||+|..+.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555554 34557999999999999999999988654
No 245
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.38 E-value=0.0044 Score=60.27 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++|+|+|-||+||||+|..++.-...
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~ 27 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE 27 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999988776543
No 246
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.37 E-value=0.0048 Score=60.42 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=25.1
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
+.+.+++++.|-||+||||+|..++.-...
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~ 32 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAE 32 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 567899999999999999999887765444
No 247
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.36 E-value=0.044 Score=50.92 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=85.5
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-----------------Eec---cCchhhHH----HHHHHHh
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-----------------FVE---ESESGRAR----SLCNRLK 179 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-----------------~~~---~~~~~~~~----~l~~~l~ 179 (532)
..+-.++.++|.-|+|||.+.+++.........-...+ +.. ........ .+....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 45557999999999999999995554333222222122 000 01111222 3333444
Q ss_pred ccCc-EEEEEcCCCCc--ccccccc--cccCCCCC-CeEEEEeecCh-------HHhhhcCCCCce-EEccCCCHHHHHH
Q 048213 180 KEKM-ILVILDNIWEN--LDFHAVG--IPHGDDHK-GCKVLLTARSL-------DVLSRKMDSQQD-FWVGVLKEDEAWS 245 (532)
Q Consensus 180 ~~k~-~LlVlDdv~~~--~~~~~l~--~~~~~~~~-gs~ilvTtr~~-------~v~~~~~~~~~~-~~l~~L~~~~~~~ 245 (532)
+++| ..+++|+.... +..+.++ ..+-.... --+|+..-.-+ .+.........+ |.+.|++.++...
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL 207 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence 5778 99999998755 2222221 11111110 11122211110 011111111234 8999999998888
Q ss_pred HHHHHhCCC--CCCcchHHHHHHHHHHcCCchHHHHHHHH
Q 048213 246 LFKKMAGDY--IEGSEFKWVAKDVAKKCAGLPVSIVTVAR 283 (532)
Q Consensus 246 Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPLai~~~~~ 283 (532)
.+....... ...--..+....|.....|.|.+|..++.
T Consensus 208 yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 208 YLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 777765421 11222356678899999999999977764
No 248
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.36 E-value=0.0057 Score=57.53 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=25.1
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++..+++|.|+.|+|||||++.+......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999998876543
No 249
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.026 Score=59.44 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=77.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-Eec-cCchhhHHHHHHHHh-------ccCcEEEEEcCCCCc----
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-FVE-ESESGRARSLCNRLK-------KEKMILVILDNIWEN---- 194 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-~~~-~~~~~~~~~l~~~l~-------~~k~~LlVlDdv~~~---- 194 (532)
.-|.|.|+.|+|||+||+++++..... +.-.+. ++. .......+.+++.+. .-..-+|||||++-.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~-~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKD-LIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccc-cceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC
Confidence 468899999999999999999977622 211111 111 111122333333332 136789999999732
Q ss_pred ----ccccc-----------cccccCCCCCCeEEEEeecChHHhhhcCCC----CceEEccCCCHHHHHHHHHHHhCCCC
Q 048213 195 ----LDFHA-----------VGIPHGDDHKGCKVLLTARSLDVLSRKMDS----QQDFWVGVLKEDEAWSLFKKMAGDYI 255 (532)
Q Consensus 195 ----~~~~~-----------l~~~~~~~~~gs~ilvTtr~~~v~~~~~~~----~~~~~l~~L~~~~~~~Lf~~~~~~~~ 255 (532)
.+|.. +...+...++.-++|.|............. ..+..+..+...+-.++++.......
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 12221 111222222223456666654433211111 23567888887777777665443221
Q ss_pred CCcchHHHHHHHHHHcCCc-hHHHHH
Q 048213 256 EGSEFKWVAKDVAKKCAGL-PVSIVT 280 (532)
Q Consensus 256 ~~~~~~~~~~~i~~~c~gl-PLai~~ 280 (532)
. ....+...-+..+|+|. |.-+.+
T Consensus 591 ~-~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 591 S-DITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred h-hhhhHHHHHHHHhcCCccchhHHH
Confidence 1 11122223377788775 444433
No 250
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.29 E-value=0.0044 Score=60.08 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=22.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
+.|+|+|-||+||||+|..++.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 478999999999999999887765543
No 251
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.28 E-value=0.0091 Score=53.99 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=26.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI 161 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 161 (532)
.+++.|+|+.|+|||||+..+......+ |...+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v 34 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVV 34 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccce
Confidence 4789999999999999999999875433 54433
No 252
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.077 Score=49.18 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=58.1
Q ss_pred cccccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eec-
Q 048213 102 NKDYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVE- 164 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~- 164 (532)
...+..+-|-+..++++++.+. -..++-|..+|++|.|||-+|++.+...... |-..+ ..+
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--FLKLAgPQLVQM 244 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--FLKLAGPQLVQM 244 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch--HHHhcchHHHhh
Confidence 4446678888999999998875 1245778999999999999999988754332 32222 111
Q ss_pred --cCchhhHHHHHHHHhccCcEEEEEcCCC
Q 048213 165 --ESESGRARSLCNRLKKEKMILVILDNIW 192 (532)
Q Consensus 165 --~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 192 (532)
.+...+....+..-+++....|.+|.++
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElD 274 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELD 274 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechh
Confidence 1122223333333345678899999986
No 253
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.26 E-value=0.0036 Score=57.24 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=22.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
||+|.|++|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999887653
No 254
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.24 E-value=0.0039 Score=52.49 Aligned_cols=22 Identities=50% Similarity=0.616 Sum_probs=20.1
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~ 151 (532)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 255
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.024 Score=56.29 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=74.5
Q ss_pred cccchHHHHHHHHHhc-CCCceE-EEEEccCCCchHHHHHHHHHHhhccC--------------------CCCEEEEecc
Q 048213 108 FESRMSTFNDILNALK-SPDVNM-LGIYGMGGIRKTTPAKEVAIKAENEK--------------------LFDRVIFVEE 165 (532)
Q Consensus 108 ~~gR~~~~~~i~~~l~-~~~~~v-v~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~~~~~ 165 (532)
++|-+....++..+.. .++..- +.++|+.|+||||+|..+++..--.. |.+..-+...
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566777778887777 444554 99999999999999999998754221 1222222222
Q ss_pred Cch------hhHHHHHHHHhc----cCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecChH-HhhhcCCCCce
Q 048213 166 SES------GRARSLCNRLKK----EKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQD 232 (532)
Q Consensus 166 ~~~------~~~~~l~~~l~~----~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~ 232 (532)
+.. +.+..+.+.... ++.-++++|+++... .-+.+...+..-...+.+|++|.... +..........
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~ 162 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQR 162 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhccee
Confidence 211 223333333321 466799999998652 33444333333355677777777443 32212222235
Q ss_pred EEccCC
Q 048213 233 FWVGVL 238 (532)
Q Consensus 233 ~~l~~L 238 (532)
+.+.+.
T Consensus 163 i~f~~~ 168 (325)
T COG0470 163 IRFKPP 168 (325)
T ss_pred eecCCc
Confidence 566653
No 256
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.17 E-value=0.012 Score=64.73 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=53.8
Q ss_pred ccccchHHHHHHHHHhcC---------CCceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEecc-Cch-------
Q 048213 107 AFESRMSTFNDILNALKS---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEE-SES------- 168 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~-~~~------- 168 (532)
.++|-++.++.|.+.+.. .....+.++|+.|+|||.+|+.++......- .|++.-+... ...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCC
Confidence 467888888888887761 1245788999999999999999988663210 0111101000 000
Q ss_pred -----hhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 169 -----GRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 169 -----~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
+....+.+.+......+++||++...
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 01123445555445579999999865
No 257
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.16 E-value=0.017 Score=64.97 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=37.5
Q ss_pred cccccchHHHHHHHHHhcC------C---CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 106 EAFESRMSTFNDILNALKS------P---DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~------~---~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4588999999999888862 1 24578899999999999999998764
No 258
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.15 E-value=0.013 Score=56.21 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=20.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
+.|.|+|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999886544
No 259
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.04 Score=57.22 Aligned_cols=168 Identities=16% Similarity=0.117 Sum_probs=100.9
Q ss_pred cccccchHHHHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHhhccC-------------------CCCEEE-Eec
Q 048213 106 EAFESRMSTFNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKAENEK-------------------LFDRVI-FVE 164 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~-~~~ 164 (532)
..++|-+.....|...+..+. ..-....|+-|+||||+|+.++...--.. .|-..+ ++.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDa 95 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDA 95 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhh
Confidence 456899999999999888554 34456789999999999999887432211 011111 111
Q ss_pred c--CchhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEE-EEeecChHHhhhcCCCCceEEc
Q 048213 165 E--SESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKV-LLTARSLDVLSRKMDSQQDFWV 235 (532)
Q Consensus 165 ~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~i-lvTtr~~~v~~~~~~~~~~~~l 235 (532)
. ..-+.++.|.+... .++.=..|+|.|+.. ..|+++...+-.-...... +.||-...+..........|.+
T Consensus 96 ASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~f 175 (515)
T COG2812 96 ASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDF 175 (515)
T ss_pred hhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccc
Confidence 1 12223444554443 245558999999855 5577665555333344444 4555555565545555678999
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 236 GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 236 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
..++.++-...+...+.... ..-.++...-|++...|.
T Consensus 176 kri~~~~I~~~L~~i~~~E~-I~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 176 KRLDLEEIAKHLAAILDKEG-INIEEDALSLIARAAEGS 213 (515)
T ss_pred cCCCHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHcCCC
Confidence 99999988887777665211 112234455555555553
No 260
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.14 E-value=0.0062 Score=59.01 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=21.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
++|+|+|-||+||||+|..++.-..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La 26 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALS 26 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5788889999999999988876554
No 261
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=96.14 E-value=0.0064 Score=58.93 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=21.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++|+|+|-||+||||+|..++.-...
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~ 27 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAE 27 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 57889999999999999888765543
No 262
>PTZ00301 uridine kinase; Provisional
Probab=96.13 E-value=0.005 Score=56.73 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999887654
No 263
>PRK04132 replication factor C small subunit; Provisional
Probab=96.12 E-value=0.093 Score=58.08 Aligned_cols=144 Identities=10% Similarity=-0.009 Sum_probs=83.1
Q ss_pred cCCCchHHHHHHHHHHhhccC-CCCEEEEeccCc--hhhHHHH-HHHHh----c-cCcEEEEEcCCCCcc--cccccccc
Q 048213 135 MGGIRKTTPAKEVAIKAENEK-LFDRVIFVEESE--SGRARSL-CNRLK----K-EKMILVILDNIWENL--DFHAVGIP 203 (532)
Q Consensus 135 ~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~~~--~~~~~~l-~~~l~----~-~k~~LlVlDdv~~~~--~~~~l~~~ 203 (532)
|.++||||+|..++++.-..+ .++..-++..+. .+.+..+ .+... . .+.-++|+|+++... ..+.+...
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~ 653 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRT 653 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHH
Confidence 788999999999998863211 012221222221 1222222 22221 1 134799999998763 45555444
Q ss_pred cCCCCCCeEEEEeecChH-HhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHH
Q 048213 204 HGDDHKGCKVLLTARSLD-VLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIV 279 (532)
Q Consensus 204 ~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 279 (532)
+-.-...+++|.+|.+.. +..........+.+.+++.++-...+...+.... ..-.++....|+..|+|-+....
T Consensus 654 lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 654 MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred hhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 432234566666665543 3222233345899999999998888877654211 11125678899999999874443
No 264
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.12 E-value=0.019 Score=52.51 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=51.9
Q ss_pred HHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHH-----------h------
Q 048213 117 DILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRL-----------K------ 179 (532)
Q Consensus 117 ~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l-----------~------ 179 (532)
+.+..+..++-+++.|.|++|.||||++..+.......+ +...+... .......+.+.. .
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~ap--T~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~ 84 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAP--TNKAAKELREKTGIEAQTIHSFLYRIPNGD 84 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEES--SHHHHHHHHHHHTS-EEEHHHHTTEECCEE
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECC--cHHHHHHHHHhhCcchhhHHHHHhcCCccc
Confidence 334444344457899999999999999999887665543 44333111 111222233332 1
Q ss_pred ------ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecC
Q 048213 180 ------KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARS 219 (532)
Q Consensus 180 ------~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~ 219 (532)
-.+.-+||+|++...+ ++..+..... ..|+++|+.--.
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~ 130 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDP 130 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-T
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCc
Confidence 0133589999998653 4544433332 246777765443
No 265
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.005 Score=52.82 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=24.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
..-|+|.||+|+||||+++.+.+..+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 3568999999999999999999877655
No 266
>PRK08233 hypothetical protein; Provisional
Probab=96.11 E-value=0.0051 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|+|.|.+|+||||||..++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998764
No 267
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.059 Score=51.00 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=87.8
Q ss_pred cccccchHHHHHHHHHhc------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc-----Cch
Q 048213 106 EAFESRMSTFNDILNALK------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE-----SES 168 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~-----~~~ 168 (532)
..+.|-+...+.+.+... ....+-|.++|++|.||+-||++|+....- ..|...-.+-. ..+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-TFFSvSSSDLvSKWmGESE 211 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLVSKWMGESE 211 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-ceEEeehHHHHHHHhccHH
Confidence 345666666666666543 124688999999999999999999986552 22222211100 112
Q ss_pred hhHHHHHHHHhccCcEEEEEcCCCCcc---------ccccccccc-------CCCCCCeEEEEeecChHHhhhcCCC--C
Q 048213 169 GRARSLCNRLKKEKMILVILDNIWENL---------DFHAVGIPH-------GDDHKGCKVLLTARSLDVLSRKMDS--Q 230 (532)
Q Consensus 169 ~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~~-------~~~~~gs~ilvTtr~~~v~~~~~~~--~ 230 (532)
.+...+++.-.+.|.-+|.+|.|+... .-..++..| .....|.-|+-.|...-++...... .
T Consensus 212 kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFe 291 (439)
T KOG0739|consen 212 KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFE 291 (439)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhh
Confidence 234556665566799999999997431 111221111 1223455555566655444211111 1
Q ss_pred ceEEccCCCHHHHHH-HHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 231 QDFWVGVLKEDEAWS-LFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 231 ~~~~l~~L~~~~~~~-Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
.-+.+ ||++..|.. .|.-+.+. .+..-.+.-.+++.++..|.
T Consensus 292 kRIYI-PLPe~~AR~~MF~lhlG~-tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 292 KRIYI-PLPEAHARARMFKLHLGD-TPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred cceec-cCCcHHHhhhhheeccCC-CccccchhhHHHHHhhcCCC
Confidence 11222 455555554 34444442 33333344456666666654
No 268
>PRK06921 hypothetical protein; Provisional
Probab=96.09 E-value=0.015 Score=55.77 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=39.3
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhh-------HHHHHHHHhccCcEEEEEcCCC
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGR-------ARSLCNRLKKEKMILVILDNIW 192 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~-------~~~l~~~l~~~k~~LlVlDdv~ 192 (532)
....+.++|..|+|||.||.++++....+..+....+........ .....+.+. +-=||||||+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~--~~dlLiIDDl~ 187 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMK--KVEVLFIDDLF 187 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEeccc
Confidence 457899999999999999999999765432344433222111010 111222222 34599999993
No 269
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.09 E-value=0.0058 Score=56.57 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.+..+|+|.|.+|+||||||..++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998865
No 270
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.06 E-value=0.0057 Score=45.37 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
+++|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 271
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.01 E-value=0.035 Score=56.53 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+|.++|+.|+||||+|..++.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999998876543
No 272
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.00 E-value=0.0063 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998654
No 273
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.99 E-value=0.024 Score=53.51 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=24.1
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
...+.++|.+|+|||+||.++++....+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~ 126 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR 126 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4578999999999999999999976543
No 274
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.055 Score=57.05 Aligned_cols=166 Identities=20% Similarity=0.200 Sum_probs=88.2
Q ss_pred cccccchHHHH---HHHHHhcCCC---------ceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eecc---Cc
Q 048213 106 EAFESRMSTFN---DILNALKSPD---------VNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEE---SE 167 (532)
Q Consensus 106 ~~~~gR~~~~~---~i~~~l~~~~---------~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~---~~ 167 (532)
....|.++.++ ++++.|.+.. ++-|.++|++|.|||.||++++....+- |-... |.+. -.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--Ff~iSGS~FVemfVGvG 227 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--FFSISGSDFVEMFVGVG 227 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--ceeccchhhhhhhcCCC
Confidence 34556665554 4555555332 4668999999999999999999988776 32221 1111 11
Q ss_pred hhhHHHHHHHHhccCcEEEEEcCCCCcc----------------cccccccccCCCC--CCeEEEEeecChHHh-hhcCC
Q 048213 168 SGRARSLCNRLKKEKMILVILDNIWENL----------------DFHAVGIPHGDDH--KGCKVLLTARSLDVL-SRKMD 228 (532)
Q Consensus 168 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~gs~ilvTtr~~~v~-~~~~~ 228 (532)
......+...-+..-.+.+++|.++... .++++.......+ .|-.|+..|...+|. .....
T Consensus 228 AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlR 307 (596)
T COG0465 228 ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLR 307 (596)
T ss_pred cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcC
Confidence 2233344433333457999999987541 1222322222222 344455555555554 11222
Q ss_pred ---CCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 229 ---SQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 229 ---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
-...+.++..+-..-.+.+.-++....-.+. .+ ...|++.+-|.-
T Consensus 308 pgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vd-l~~iAr~tpGfs 355 (596)
T COG0465 308 PGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VD-LKKIARGTPGFS 355 (596)
T ss_pred CCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CC-HHHHhhhCCCcc
Confidence 2246666666666666777655542221111 11 122666666653
No 275
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.97 E-value=0.019 Score=52.32 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
++++.++|+.|+||||.+..++.....+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4789999999999998887777766544
No 276
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.97 E-value=0.016 Score=61.25 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=42.4
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---EeccCchhhHHHHHHHHhc-------cCcEEEEEcCCCCc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEESESGRARSLCNRLKK-------EKMILVILDNIWEN 194 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~~~~~~~~~l~~~l~~-------~k~~LlVlDdv~~~ 194 (532)
-+++.++|++|+||||||.-++++.- |...- .+..+......+|...++. ++...||+|.++..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG----YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG----YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC----ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 47899999999999999999998754 32221 2222333333444444432 46677999999865
No 277
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.96 E-value=0.042 Score=54.79 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=25.8
Q ss_pred HHHHHHHhcCC----CceEEEEEccCCCchH-HHHHHHHHHh
Q 048213 115 FNDILNALKSP----DVNMLGIYGMGGIRKT-TPAKEVAIKA 151 (532)
Q Consensus 115 ~~~i~~~l~~~----~~~vv~I~G~gGiGKT-tLA~~v~~~~ 151 (532)
...+..++.++ +-++|.++|+.|+||| |||+..+.-.
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34444444433 3699999999999999 5777666544
No 278
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.95 E-value=0.022 Score=64.04 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHhcC---------CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 107 AFESRMSTFNDILNALKS---------PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.++|.+..++.+...+.. .+..++.++|+.|+|||++|+.+++..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 578988888888877751 112478899999999999999998754
No 279
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.95 E-value=0.023 Score=55.69 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=81.0
Q ss_pred ccccccchHHHHHHHHHhcCCC---ceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-------------Eec--cC
Q 048213 105 YEAFESRMSTFNDILNALKSPD---VNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-------------FVE--ES 166 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~---~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-------------~~~--~~ 166 (532)
.+.|.+|+..+..+...+.+.. +..|-|+|-+|.|||.+.+.+++......-|-..+ ... .+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d 84 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLAD 84 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCC
Confidence 4567799999999999888543 24458899999999999999999874332221111 000 11
Q ss_pred ch------------hhHHHHHH--HHh-ccCcEEEEEcCCCCccccccccccc----C--CCCCCeEEEEeecCh--HHh
Q 048213 167 ES------------GRARSLCN--RLK-KEKMILVILDNIWENLDFHAVGIPH----G--DDHKGCKVLLTARSL--DVL 223 (532)
Q Consensus 167 ~~------------~~~~~l~~--~l~-~~k~~LlVlDdv~~~~~~~~l~~~~----~--~~~~gs~ilvTtr~~--~v~ 223 (532)
.+ +....+.+ ... .++.++||||+++...+.+++.-+. . -..+ .-+|+++-.. ...
T Consensus 85 ~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~~~e~~y 163 (438)
T KOG2543|consen 85 KDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAPSCEKQY 163 (438)
T ss_pred CchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEeccccHHHh
Confidence 10 01111222 111 1468999999998776555431110 0 0112 2234443322 222
Q ss_pred hhcCCCCc--eEEccCCCHHHHHHHHHHH
Q 048213 224 SRKMDSQQ--DFWVGVLKEDEAWSLFKKM 250 (532)
Q Consensus 224 ~~~~~~~~--~~~l~~L~~~~~~~Lf~~~ 250 (532)
...++... ++....-+.++...++.+.
T Consensus 164 ~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 164 LINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred hcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 21234433 4556677788888887663
No 280
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.95 E-value=0.025 Score=63.46 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=36.1
Q ss_pred cccccchHHHHHHHHHhcC-------C--CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 106 EAFESRMSTFNDILNALKS-------P--DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~-------~--~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++|-+..++.+.+.+.. . +..++.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578988888888887751 1 23457789999999999999998754
No 281
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.94 E-value=0.0067 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+|+|+|++|+||||||+.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999987643
No 282
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.93 E-value=0.02 Score=52.46 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=53.0
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-----------------Eec--c--CchhhHHHHHHHHhccCcEEE
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-----------------FVE--E--SESGRARSLCNRLKKEKMILV 186 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-----------------~~~--~--~~~~~~~~l~~~l~~~k~~Ll 186 (532)
.++.|+|+.|+||||++..+....... ....+ ... . ......+.+...+.. ..=.+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~-~pd~i 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ-DPDVI 78 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC-CcCEE
Confidence 478999999999999999877654321 11111 000 0 112234455555654 45589
Q ss_pred EEcCCCCcccccccccccCCCCCCeEEEEeecChHHh
Q 048213 187 ILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDVL 223 (532)
Q Consensus 187 VlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v~ 223 (532)
++|++.+.+.+..+... ...|..++.|+...++.
T Consensus 79 i~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 79 LVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 99999877655443222 23455677787766553
No 283
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.93 E-value=0.016 Score=52.47 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 284
>PRK06762 hypothetical protein; Provisional
Probab=95.91 E-value=0.0072 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998765
No 285
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.91 E-value=0.0094 Score=57.56 Aligned_cols=24 Identities=33% Similarity=0.722 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+|++.|-||+||||+|..++....
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La 25 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFA 25 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHH
Confidence 578889999999999988776544
No 286
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.86 E-value=0.023 Score=50.28 Aligned_cols=27 Identities=19% Similarity=0.110 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.-..+.++|++|.||||+.+.+|...+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 346789999999999999999998755
No 287
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.86 E-value=0.01 Score=58.12 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=21.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
+++.+.|-||+||||+|.+.+-....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~ 27 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR 27 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh
Confidence 68899999999999999887765443
No 288
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.83 E-value=0.0081 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
+.++|+|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998754
No 289
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.0013 Score=58.49 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=16.9
Q ss_pred cccEEeecccccccc------ccCCcceEEeccccc
Q 048213 415 ILEILRLRVNELTRA------GSSQLKHLSVRGLRA 444 (532)
Q Consensus 415 ~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~ 444 (532)
.++.++-+++.|... .++.++.|.+.+|..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~ 137 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY 137 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccc
Confidence 356667666665554 344555555555533
No 290
>PHA02244 ATPase-like protein
Probab=95.82 E-value=0.043 Score=54.40 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 116 NDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 116 ~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..+..++..+ .-|.|+|+.|+|||+||++++....
T Consensus 110 ~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 110 ADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444433 3467899999999999999998744
No 291
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.82 E-value=0.025 Score=51.15 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.+.+.|+|++|+||+||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998874
No 292
>PRK03839 putative kinase; Provisional
Probab=95.82 E-value=0.0077 Score=54.30 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.|.|.|++|+||||+|+.+++....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999987643
No 293
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.021 Score=54.56 Aligned_cols=27 Identities=26% Similarity=0.253 Sum_probs=25.0
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
|+|.++||+|.|||+|.+++++...++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheee
Confidence 789999999999999999999987766
No 294
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.78 E-value=0.012 Score=56.92 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=21.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++|+|.|-||+||||++..++.....
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~ 28 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAK 28 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68888899999999999888776543
No 295
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.77 E-value=0.011 Score=57.28 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=21.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
++|+|.|-||+||||+|..++.-..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La 27 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMA 27 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 6888889999999999998776554
No 296
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.77 E-value=0.029 Score=46.51 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=34.8
Q ss_pred cccccchHHHHHHHHHhc-------CCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 106 EAFESRMSTFNDILNALK-------SPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++|-.-..+.|++++. ...+-|++.+|+.|+|||-+|+.+++..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 356676666666666665 3456789999999999999998888763
No 297
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.75 E-value=0.012 Score=56.81 Aligned_cols=26 Identities=31% Similarity=0.609 Sum_probs=21.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++|+|.|-||+||||+|..++.-...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE 27 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 57888899999999999998776553
No 298
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.13 Score=47.48 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=81.1
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHH-----------HHHHHHhccCcEEEEEcCCCCc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRAR-----------SLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~-----------~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
+++-+.++|++|.|||-||++|++...-. |...+..+..+ .++-.-.+.-.-.|.+|.+++.
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~c~-------firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsi 252 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHTDCT-------FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 252 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhcceE-------EEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeeccccc
Confidence 56788999999999999999999875543 33333333322 2222222335678889988753
Q ss_pred cc------------cc----ccccccC--CCCCCeEEEEeecChHHhh-hcCCC---CceEEccCCCHHHHHHHHHHHhC
Q 048213 195 LD------------FH----AVGIPHG--DDHKGCKVLLTARSLDVLS-RKMDS---QQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 195 ~~------------~~----~l~~~~~--~~~~gs~ilvTtr~~~v~~-~~~~~---~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
.. .. .+...+. ...+.-+||..|...+++. ....+ ..-++..+-+++.-.+++.-+..
T Consensus 253 gs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 253 GSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred ccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 10 00 0111111 1234567887777666541 12222 23566667676666677665543
Q ss_pred --CCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 048213 253 --DYIEGSEFKWVAKDVAKKCAGLPVSIVTVARAL 285 (532)
Q Consensus 253 --~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 285 (532)
.....-++..+++++....|.--.++-+-|+..
T Consensus 333 kmnl~rgi~l~kiaekm~gasgaevk~vcteagm~ 367 (404)
T KOG0728|consen 333 KMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMY 367 (404)
T ss_pred hhchhcccCHHHHHHhCCCCccchhhhhhhhhhHH
Confidence 222233445555554433332233343444433
No 299
>PF13245 AAA_19: Part of AAA domain
Probab=95.73 E-value=0.043 Score=41.46 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=29.9
Q ss_pred CceEEEEEccCCCchHHHHH-HHHHHhhccCCCCEEEEeccCchhhHHHHHHHH
Q 048213 126 DVNMLGIYGMGGIRKTTPAK-EVAIKAENEKLFDRVIFVEESESGRARSLCNRL 178 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~-~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l 178 (532)
+.+++.|.|++|.|||+++. .+..-...+......+..........+.+.+++
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34678889999999995554 444433211112333333334444555666665
No 300
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=95.68 E-value=0.015 Score=56.99 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..++|+|.|-||+||||++..+.....
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la 29 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALV 29 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHH
Confidence 357888899999999999988766544
No 301
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.011 Score=54.02 Aligned_cols=28 Identities=39% Similarity=0.420 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.+.+|||.|.+|+||||+|+.++.....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999987653
No 302
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.68 E-value=0.018 Score=49.43 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=23.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
++|.|+|..|+|||||++.+.+....+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 489999999999999999999887644
No 303
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.67 E-value=0.021 Score=56.68 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=36.4
Q ss_pred cccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 106 EAFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++|+...+.++++.+. ...-.-|.|+|..|+||+++|+.++...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 357898888888887776 2333567899999999999999998643
No 304
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.66 E-value=0.024 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.++|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998864
No 305
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.66 E-value=0.049 Score=52.24 Aligned_cols=105 Identities=18% Similarity=0.112 Sum_probs=61.8
Q ss_pred HHHHHHhc-CCCceEEEEEccCCCchHHHHHHHHHHhhccC---CCCE-EE---------------------Ee---ccC
Q 048213 116 NDILNALK-SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK---LFDR-VI---------------------FV---EES 166 (532)
Q Consensus 116 ~~i~~~l~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~-~~---------------------~~---~~~ 166 (532)
+.++..+. .+....++|+|+.|+|||||.+.++....... .|+. .+ .. ..+
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~ 178 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLD 178 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccc
Confidence 34444444 44567899999999999999999987543210 0111 11 00 000
Q ss_pred chhhHHHHHHHHhccCcEEEEEcCCCCcccccccccccCCCCCCeEEEEeecChHHh
Q 048213 167 ESGRARSLCNRLKKEKMILVILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDVL 223 (532)
Q Consensus 167 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v~ 223 (532)
.-.....+...+..-..-++++|.+-..+.+..+...+ ..|..+|+||....+.
T Consensus 179 ~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 179 GCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred cchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 00112223333332356789999988776666654443 2477899999976663
No 306
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.0021 Score=59.92 Aligned_cols=95 Identities=17% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc-------ccCCcceEEe
Q 048213 367 VARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA-------GSSQLKHLSV 439 (532)
Q Consensus 367 ~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~-------~l~~Lr~L~l 439 (532)
++.+-+-|++-++.+..+.- +..|+.|..|.|+-|++..+..+..|++|+.|.|..|.|..+ ++++||.|-|
T Consensus 17 dl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 44555667777787766532 467899999999999999999999999999999999988877 8899999999
Q ss_pred ccccccCCCCCc-----ccccCCCCCEEe
Q 048213 440 RGLRASAPNPTE-----SEVALPKLETVC 463 (532)
Q Consensus 440 ~~~~~~~~~~~~-----~~~~l~~L~~L~ 463 (532)
..|.. ....+. .+.-||+|+.||
T Consensus 96 ~ENPC-c~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPC-CGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCc-ccccchhHHHHHHHHcccchhcc
Confidence 98876 333332 335578888775
No 307
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.57 E-value=0.46 Score=47.17 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhcC---CCceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 112 MSTFNDILNALKS---PDVNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 112 ~~~~~~i~~~l~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
+...+.|.+.+.+ ....+|+|.|.=|+|||++.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3345556666653 567899999999999999999998876654
No 308
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.57 E-value=0.031 Score=49.04 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-|+++|.+|+|||||+..+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998654
No 309
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.57 E-value=0.016 Score=56.04 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=22.5
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHH
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.....+|+|.|..|+||||+|+.+..-
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999999999877543
No 310
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.55 E-value=0.05 Score=48.61 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHH
Q 048213 116 NDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 116 ~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
..+.+++.......|+++|.+|+|||||...+...
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence 34455554334567889999999999999998653
No 311
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.55 E-value=0.039 Score=53.53 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=27.5
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhcc-CCCCEEE
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENE-KLFDRVI 161 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~ 161 (532)
..++++++|++|+||||++..++.....+ +.+...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~l 229 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVAL 229 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEE
Confidence 35699999999999999999988766544 2355444
No 312
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.54 E-value=0.037 Score=55.04 Aligned_cols=40 Identities=10% Similarity=-0.056 Sum_probs=30.6
Q ss_pred HHHHHHHHhcC-CCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 114 TFNDILNALKS-PDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 114 ~~~~i~~~l~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...++++.+.. +.-..+.|+|..|+|||||++.+++....
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44567777762 44467799999999999999998886543
No 313
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.012 Score=50.64 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
+|.|.|++|+||||+|+.++++...+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68999999999999999999987644
No 314
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.50 E-value=0.0075 Score=59.49 Aligned_cols=133 Identities=22% Similarity=0.291 Sum_probs=74.2
Q ss_pred cccccEEEeccccc-cC--c-ccccccccccEEeecccc-cccc-------ccCCcceEEeccccccCCCC--CcccccC
Q 048213 391 LTNLQTLCLYYCKL-QD--T-SVLGELKILEILRLRVNE-LTRA-------GSSQLKHLSVRGLRASAPNP--TESEVAL 456 (532)
Q Consensus 391 l~~L~~L~l~~~~l-~~--~-~~i~~l~~L~~L~l~~~~-l~~~-------~l~~Lr~L~l~~~~~~~~~~--~~~~~~l 456 (532)
+..|++|+.++|.- .+ + .-..+..+|++|.+++|+ ++.. .++.|+.|++..+.. +... -..-.+.
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~-~~d~tL~sls~~C 371 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL-ITDGTLASLSRNC 371 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce-ehhhhHhhhccCC
Confidence 45566666666532 22 1 123455677777777764 2222 566777777777744 2211 1222456
Q ss_pred CCCCEEecCCc-ccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCccc
Q 048213 457 PKLETVCLSSI-NIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPVLK 525 (532)
Q Consensus 457 ~~L~~L~L~~~-~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L~ 525 (532)
+.|+.|.|+.| .|+....-.+....+.+..|..|.|++|+.+.+- ........++|+.+++-+|..+.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCcccceeeeechhhhh
Confidence 77777777776 3332211112222255677788888888776654 33333567777777777775443
No 315
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.50 E-value=0.044 Score=53.71 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-+++-|+|++|+||||||.+++....
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999998776544
No 316
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.50 E-value=0.028 Score=54.09 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHh--------------cc
Q 048213 116 NDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLK--------------KE 181 (532)
Q Consensus 116 ~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~--------------~~ 181 (532)
..+++.+...+ +-+.++|+.|+|||++++.......... |-.... .-+.......+++.+. .+
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~~~~~~-~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~ 99 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-YLVITI-NFSAQTTSNQLQKIIESKLEKRRGRVYGPPGG 99 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-EEEEEE-ES-TTHHHHHHHHCCCTTECECTTEEEEEESS
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-cceeEe-eccCCCCHHHHHHHHhhcEEcCCCCCCCCCCC
Confidence 34555555454 5668999999999999999886533222 212111 1122223334443332 26
Q ss_pred CcEEEEEcCCCC
Q 048213 182 KMILVILDNIWE 193 (532)
Q Consensus 182 k~~LlVlDdv~~ 193 (532)
|+.++.+||+.-
T Consensus 100 k~lv~fiDDlN~ 111 (272)
T PF12775_consen 100 KKLVLFIDDLNM 111 (272)
T ss_dssp SEEEEEEETTT-
T ss_pred cEEEEEecccCC
Confidence 889999999964
No 317
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.50 E-value=0.032 Score=51.84 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.-|+|+|++|+|||||+..+..+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 46889999999999999999876543
No 318
>PRK00625 shikimate kinase; Provisional
Probab=95.48 E-value=0.012 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988754
No 319
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.47 E-value=0.01 Score=54.44 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
+|+|.|+.|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987754
No 320
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.47 E-value=0.014 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...|.++|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 321
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.47 E-value=0.039 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.7
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~ 151 (532)
|+++|.+|+|||||+..+....
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999988754
No 322
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.034 Score=52.36 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=57.9
Q ss_pred ccccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEE------e
Q 048213 103 KDYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIF------V 163 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~------~ 163 (532)
..+..+-|-+..+++|.+... -..++-|.++|.+|.|||-||++|+|..... |-.++- .
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRvvGseLiQky 259 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRVVGSELIQKY 259 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhhhhHHHHHHH
Confidence 335567788888888887764 1245778899999999999999999976654 533320 0
Q ss_pred ccCchhhHHHHHHHHhccCcEEEEEcCCC
Q 048213 164 EESESGRARSLCNRLKKEKMILVILDNIW 192 (532)
Q Consensus 164 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 192 (532)
..+...+..++++.-...-.-.+.+|.++
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhh
Confidence 11222334445544444456778888876
No 323
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=95.46 E-value=0.018 Score=56.31 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=21.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++|+|+|-||+||||+|..++.-...
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~ 26 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAE 26 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57888999999999999988775543
No 324
>PRK13768 GTPase; Provisional
Probab=95.45 E-value=0.019 Score=54.81 Aligned_cols=25 Identities=28% Similarity=0.225 Sum_probs=21.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.++.|.|+||+||||++..+.....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~ 27 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLE 27 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHH
Confidence 5789999999999999988776543
No 325
>PRK04040 adenylate kinase; Provisional
Probab=95.45 E-value=0.014 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 326
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.44 E-value=0.018 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.707 Sum_probs=21.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
+|+|.|-||+||||+|..++.....
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~ 26 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAK 26 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6888899999999999988776554
No 327
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.43 E-value=0.01 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999987653
No 328
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.42 E-value=0.021 Score=55.92 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.+++.+.|.||+||||+|.+.+-....
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~ 28 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE 28 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH
Confidence 478999999999999999986554443
No 329
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.42 E-value=0.011 Score=53.32 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988653
No 330
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.42 E-value=0.033 Score=55.32 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=32.9
Q ss_pred cccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 108 FESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 108 ~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
++|+...+.++.+.+. ...-.-|.|.|..|+||+++|+.+++...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 3566666767666665 23335678999999999999999986543
No 331
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.41 E-value=0.011 Score=48.10 Aligned_cols=23 Identities=48% Similarity=0.515 Sum_probs=19.9
Q ss_pred EEEEccCCCchHHHHHHHHHHhh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
|-|+|.+|+|||++|..++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999887654
No 332
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=0.067 Score=48.86 Aligned_cols=102 Identities=23% Similarity=0.204 Sum_probs=62.5
Q ss_pred HHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhcc-CCCC---EEEEeccCc----------------------hhhH
Q 048213 118 ILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENE-KLFD---RVIFVEESE----------------------SGRA 171 (532)
Q Consensus 118 i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~---~~~~~~~~~----------------------~~~~ 171 (532)
+++.+-+.+..-..|.|++|+|||||.+.+++-.... +.|. ..+.+..++ --..
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~ 207 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKA 207 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHH
Confidence 5566666777778899999999999999998865533 1232 122111111 0011
Q ss_pred HHHHHHHhccCcEEEEEcCCCCcccccccccccCCCCCCeEEEEeecChHH
Q 048213 172 RSLCNRLKKEKMILVILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDV 222 (532)
Q Consensus 172 ~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v 222 (532)
+-+.....+--.=.+|+|.+-..++..++...+ +.|.+++.|.....+
T Consensus 208 ~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 208 EGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred HHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 222233333345689999999887766665553 568888877765444
No 333
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.40 E-value=0.081 Score=46.98 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHH
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.+...|+|+|.+|+|||||...+...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 34466999999999999999999875
No 334
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.40 E-value=0.034 Score=48.29 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.3
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|+|+|..|+|||||...+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999775
No 335
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.39 E-value=0.15 Score=53.79 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.-..|+|+|+.|+|||||.+.+....
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 34679999999999999999996543
No 336
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.013 Score=52.75 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=24.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
..+|+|-||=|+||||||+.++++...+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence 4789999999999999999999987643
No 337
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.37 E-value=0.014 Score=52.59 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=21.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+++|+|+.|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987643
No 338
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.36 E-value=0.43 Score=46.98 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=34.3
Q ss_pred eEEccCCCHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHHcCCchHHH
Q 048213 232 DFWVGVLKEDEAWSLFKKMAGDYIEG--SEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 232 ~~~l~~L~~~~~~~Lf~~~~~~~~~~--~~~~~~~~~i~~~c~glPLai 278 (532)
.+.+++++.+|+..++..+.-..... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999999877522221 344556777777779999643
No 339
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.36 E-value=0.028 Score=51.52 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
.|+|+|-||+||||+|..+......+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999866655443
No 340
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.35 E-value=0.55 Score=45.80 Aligned_cols=160 Identities=13% Similarity=-0.013 Sum_probs=91.8
Q ss_pred HHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHh--------hcc-CCCCEEEEeccCc---hhhHHHHHHHHh--
Q 048213 115 FNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKA--------ENE-KLFDRVIFVEESE---SGRARSLCNRLK-- 179 (532)
Q Consensus 115 ~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~--------~~~-~~F~~~~~~~~~~---~~~~~~l~~~l~-- 179 (532)
++.+.+.+..+. ..+..++|..|.||+++|..+.+.. ... ..++...++.... .+.+..+.+.+.
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~ 84 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFS 84 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccC
Confidence 344455555544 4566799999999999999998765 111 1234444431111 123344444442
Q ss_pred ---ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecC-hHHhhhcCCCCceEEccCCCHHHHHHHHHHHhCC
Q 048213 180 ---KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARS-LDVLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGD 253 (532)
Q Consensus 180 ---~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 253 (532)
++.+-++|+|++.... ..+.+...+..-..++.+|++|.+ ..+..........+.+.++++++..+.+... +
T Consensus 85 ~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~- 162 (299)
T PRK07132 85 SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N- 162 (299)
T ss_pred CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C-
Confidence 1467788899986553 244444444333455666655544 3443333444568999999999998777653 1
Q ss_pred CCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 254 YIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 254 ~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
. .++.+..++...+|.--|+..+
T Consensus 163 -~----~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 163 -K----EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred -C----ChhHHHHHHHHcCCHHHHHHHH
Confidence 1 1334566666667643455543
No 341
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.34 E-value=0.017 Score=51.81 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=24.3
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+|.+.|+.|+||||+|+.+++....
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999987653
No 342
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.34 E-value=0.0098 Score=32.95 Aligned_cols=18 Identities=33% Similarity=0.285 Sum_probs=11.5
Q ss_pred CCCEEecCCccccccccc
Q 048213 458 KLETVCLSSINIERIWQN 475 (532)
Q Consensus 458 ~L~~L~L~~~~l~~lp~~ 475 (532)
+|++|+|++|+++.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 356666666666666655
No 343
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.32 E-value=0.029 Score=59.52 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=38.8
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHH
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-..++|.+..++.+...+......-+.|+|+.|+|||++|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999988777665667789999999999999999864
No 344
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.31 E-value=0.17 Score=59.88 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=25.2
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+-|.++|++|.|||.||++++.+..+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 45678999999999999999999998654
No 345
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.31 E-value=0.013 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998763
No 346
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.31 E-value=0.021 Score=49.61 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=23.9
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
..+|-|.|.+|+||||||+++.+.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3588899999999999999999887654
No 347
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.30 E-value=0.051 Score=53.37 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-+++-|+|++|+||||||.+++....
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~ 80 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ 80 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999876543
No 348
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.30 E-value=0.041 Score=48.42 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 349
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.30 E-value=0.055 Score=47.37 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
++.|+|.+|+||||++..+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999987654
No 350
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.027 Score=50.41 Aligned_cols=27 Identities=37% Similarity=0.373 Sum_probs=22.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
+.|.+.|.+|+||||+|++++...+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 567889999999999999999865543
No 351
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.28 E-value=0.084 Score=56.40 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=39.0
Q ss_pred cccccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 104 DYEAFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
....++|....+.++++.+. ...-..|.|+|..|+|||++|+.+++...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 34578999999988888776 23345677999999999999999987643
No 352
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.25 E-value=0.028 Score=54.13 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+.+++.++|++|+||||++..++....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4468999999999999999998886654
No 353
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.039 Score=55.19 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..++|+++|++|+||||++..++....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999887554
No 354
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.25 E-value=0.051 Score=47.82 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=18.4
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|+++|.+|+|||||+..+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999887654
No 355
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.25 E-value=0.068 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+++.++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999888876654
No 356
>PRK06217 hypothetical protein; Validated
Probab=95.23 E-value=0.015 Score=52.52 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.0
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..|.|.|++|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998754
No 357
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.22 E-value=0.065 Score=53.03 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=24.4
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
...+.++|..|+|||.||.++++....+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3789999999999999999999976544
No 358
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.21 E-value=0.016 Score=49.67 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~ 151 (532)
|.++|++|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999876
No 359
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.048 Score=51.95 Aligned_cols=91 Identities=22% Similarity=0.257 Sum_probs=57.1
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---EeccCchhhHHHH---HHHHhccCcEEEEEcCCCCc-----
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEESESGRARSL---CNRLKKEKMILVILDNIWEN----- 194 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~~~~~~~~~l---~~~l~~~k~~LlVlDdv~~~----- 194 (532)
.+..++|||++|.|||-+|+.|+....+. |=... ....-..+.+..| .++..+-..|.|.+||++..
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n--fl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~ 242 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN--FLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRF 242 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc--eEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEe
Confidence 35789999999999999999999987664 43222 1111122223333 33444446699999999732
Q ss_pred ------------------ccccccccccCCCCCCeEEEEeecChHHh
Q 048213 195 ------------------LDFHAVGIPHGDDHKGCKVLLTARSLDVL 223 (532)
Q Consensus 195 ------------------~~~~~l~~~~~~~~~gs~ilvTtr~~~v~ 223 (532)
++|+.+ +.....++|+||...+.+
T Consensus 243 se~Ts~dreiqrTLMeLlnqmdgf-----d~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 243 SEGTSSDREIQRTLMELLNQMDGF-----DTLHRVKTIMATNRPDTL 284 (388)
T ss_pred ccccchhHHHHHHHHHHHHhhccc-----hhcccccEEEecCCcccc
Confidence 123222 122456889999887764
No 360
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.20 E-value=0.02 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+|+|+|++|+||||+|+.++....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999998764
No 361
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=95.18 E-value=0.052 Score=49.86 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=18.7
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|.++|.+|+|||+|+..+..+
T Consensus 3 vvvlG~~gVGKTSli~r~~~~ 23 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDD 23 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 679999999999999988764
No 362
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.17 E-value=0.036 Score=49.00 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|+|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998865
No 363
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.16 E-value=0.065 Score=46.38 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.7
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~ 151 (532)
|.++|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999987754
No 364
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.071 Score=48.80 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.-.+.+|.||.|+||||||..+.-++.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346889999999999999999988764
No 365
>PLN02165 adenylate isopentenyltransferase
Probab=95.16 E-value=0.024 Score=55.54 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=25.2
Q ss_pred hcCCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 122 LKSPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 122 l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
+......+++|+|+.|+||||||..++...
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 345556799999999999999999998764
No 366
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.15 E-value=0.018 Score=51.59 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999998764
No 367
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.15 E-value=0.014 Score=30.08 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=6.6
Q ss_pred CCCEEecCCccccccc
Q 048213 458 KLETVCLSSINIERIW 473 (532)
Q Consensus 458 ~L~~L~L~~~~l~~lp 473 (532)
+|+.|+|++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 368
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.14 E-value=0.057 Score=55.14 Aligned_cols=46 Identities=15% Similarity=0.012 Sum_probs=34.1
Q ss_pred ccccchHHHHHHHHHhc-------CC---------CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 107 AFESRMSTFNDILNALK-------SP---------DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~-------~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.++|.+..++.+...+. .. .-..+.++|++|+|||++|+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 47888888877754441 10 125689999999999999999987653
No 369
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.14 E-value=0.04 Score=46.53 Aligned_cols=27 Identities=19% Similarity=0.007 Sum_probs=23.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
-.+|.+.|.-|+||||+++.+++....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 368999999999999999999987543
No 370
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.13 E-value=0.062 Score=47.15 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=19.6
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~ 151 (532)
|+++|.+|+|||||+..+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998653
No 371
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.13 E-value=0.023 Score=50.41 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=24.4
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+++|+|..|+|||||+..+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999977654
No 372
>PRK09354 recA recombinase A; Provisional
Probab=95.12 E-value=0.068 Score=52.94 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-+++-|+|++|+||||||.+++....
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~ 85 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ 85 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999876544
No 373
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.12 E-value=0.054 Score=52.11 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=29.3
Q ss_pred HHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 118 ILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 118 i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..+++.+.+..++.|.|.+|+|||||...+.+....
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 344444678899999999999999999999887543
No 374
>PRK13947 shikimate kinase; Provisional
Probab=95.12 E-value=0.018 Score=51.38 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=22.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.|.|+|++|+||||+|+.+++....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987543
No 375
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.02 Score=51.36 Aligned_cols=24 Identities=38% Similarity=0.322 Sum_probs=21.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998843
No 376
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.08 E-value=0.044 Score=51.35 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=30.5
Q ss_pred HHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 114 TFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 114 ~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
...++++.+. .++..+|+|.|++|+|||||..++......+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 4555666665 4578899999999999999999988776543
No 377
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.07 E-value=0.018 Score=49.78 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=21.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+|.|.|+.|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 378
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.07 E-value=0.068 Score=46.86 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.4
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~ 151 (532)
|.|+|.+|+|||||+..+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999987643
No 379
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.06 E-value=0.047 Score=48.40 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-|+++|.+|+|||||...+.+..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999987543
No 380
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.05 E-value=0.055 Score=47.97 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|+++|.+|+|||||+..+.+.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988764
No 381
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.05 E-value=0.054 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-.++.|+|.+|+|||++|.+++-.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999754
No 382
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.059 Score=52.93 Aligned_cols=67 Identities=19% Similarity=0.092 Sum_probs=40.3
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEec-----cCchhhHHHHHHHHhccCcEEEEEcCCCC
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVE-----ESESGRARSLCNRLKKEKMILVILDNIWE 193 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~-----~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 193 (532)
..+-|..+|++|.|||-||++|+...... .|....... ...+..+..+++.-.---.-.|.+|.+++
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~tT-FFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDs 315 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGTT-FFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDS 315 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcCe-EEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHH
Confidence 56789999999999999999999987644 232222000 01112233333332222345788888864
No 383
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.04 E-value=0.017 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
++++|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999884
No 384
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.04 E-value=0.017 Score=51.93 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+|+|.|.+|+||||||..+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987654
No 385
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.03 E-value=0.018 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 386
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.03 E-value=0.049 Score=51.71 Aligned_cols=89 Identities=19% Similarity=0.149 Sum_probs=56.7
Q ss_pred cccccchHHHHHHHHHhc-------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE--------EeccCc---
Q 048213 106 EAFESRMSTFNDILNALK-------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI--------FVEESE--- 167 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--------~~~~~~--- 167 (532)
..++|-.-..+.|+..+. ..++-+++.+|..|.||.-+|+.+++.......=...+ |...+.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~ 161 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIED 161 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHH
Confidence 346676666677777765 24567999999999999999999988754321111111 222221
Q ss_pred --hhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 168 --SGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 168 --~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
.++...++..++.-+|-|+|+|+++..
T Consensus 162 Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 162 YKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 123334444444568999999999865
No 387
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.02 E-value=0.059 Score=46.94 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|+|+|++|+|||||...+...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998754
No 388
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.02 E-value=0.13 Score=46.39 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=27.0
Q ss_pred HHHHHHHhcC-CCceEEEEEccCCCchHHHHHHHHHH
Q 048213 115 FNDILNALKS-PDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 115 ~~~i~~~l~~-~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
..++..++.. .....|+++|.+|+|||||...+...
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456665532 44467889999999999999998764
No 389
>PRK14527 adenylate kinase; Provisional
Probab=94.99 E-value=0.025 Score=51.54 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
....+|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999987654
No 390
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.99 E-value=0.017 Score=48.04 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEccCCCchHHHHHHHHHHhhccCCCCE
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAENEKLFDR 159 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~~ 159 (532)
|.|+|.+|+||||+|+.++...... |..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~--f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS--FKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc--eeE
Confidence 5789999999999999999875543 643
No 391
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=94.98 E-value=0.058 Score=47.65 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.|+++|.+|+|||||...+...
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 392
>PRK14530 adenylate kinase; Provisional
Probab=94.96 E-value=0.022 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987654
No 393
>PRK13949 shikimate kinase; Provisional
Probab=94.96 E-value=0.023 Score=50.59 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+.|.|+|+.|+||||+++.+++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 394
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=94.95 E-value=0.03 Score=54.62 Aligned_cols=24 Identities=38% Similarity=0.697 Sum_probs=20.5
Q ss_pred EEEEccCCCchHHHHHHHHHHhhc
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++|.|-||+||||+|..++.....
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~ 26 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALAR 26 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 789999999999999988776543
No 395
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.93 E-value=0.02 Score=52.72 Aligned_cols=27 Identities=33% Similarity=0.310 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.-.+++|+|.+|+|||||++.++--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 346899999999999999999986443
No 396
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=94.93 E-value=0.065 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 397
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.93 E-value=0.039 Score=54.39 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.1
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
+..+++++|++|+||||++..++.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999999998876553
No 398
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.92 E-value=0.066 Score=47.16 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|+|+|.+|+|||||..++...
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999754
No 399
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.91 E-value=0.07 Score=47.03 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=19.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-|+|+|.+|+|||||+..+...
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46889999999999999988653
No 400
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=94.88 E-value=0.072 Score=46.53 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-|+++|.+|+|||||+..+.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37889999999999999987643
No 401
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.88 E-value=0.13 Score=51.54 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.+.||-.+|.-|+||||.|-.+++..+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 4688999999999999999888776554
No 402
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.88 E-value=0.065 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.5
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998765
No 403
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=94.85 E-value=0.075 Score=46.47 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.3
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~ 151 (532)
|.|+|.+|+|||+|+..+....
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~ 23 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE 23 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6799999999999999987653
No 404
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.84 E-value=0.059 Score=59.46 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=37.1
Q ss_pred cccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 106 EAFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..++|+...+.++++.+. ...-..|.|.|..|+|||++|+.+++...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 368899888888876665 23345788999999999999999987543
No 405
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.84 E-value=0.025 Score=52.06 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...+++|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34789999999999999999998864
No 406
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.83 E-value=0.031 Score=51.64 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=27.3
Q ss_pred HhcCCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 121 ALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 121 ~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+..+++++|+++|..|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999987643
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.074 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 408
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=94.78 E-value=0.081 Score=47.08 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|.++|.+|+|||+|+..+..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~ 23 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD 23 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999998875
No 409
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.77 E-value=0.07 Score=56.54 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=38.7
Q ss_pred ccccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 105 YEAFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...++|+...+.++.+.+. ...-..|.|+|..|+|||++|+.+++...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4568899888888888776 33446788999999999999999988643
No 410
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.76 E-value=0.048 Score=53.51 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=41.3
Q ss_pred cccccchHHHHHHHHHhc------CCCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 106 EAFESRMSTFNDILNALK------SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..|+|.++.+++|++.+. +..-+++.++|+.|.||||||..+-+-.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 479999999999999887 345689999999999999999998776543
No 411
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.76 E-value=0.03 Score=51.36 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=24.5
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.....+|+|+|++|+||||+|+.+....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3556899999999999999999998865
No 412
>PLN02348 phosphoribulokinase
Probab=94.76 E-value=0.059 Score=53.92 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHHHhc-CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 116 NDILNALK-SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 116 ~~i~~~l~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..+..... .+...+|+|.|.+|+||||+|+.+.+...
T Consensus 37 ~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 37 SSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred HHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34444333 35678999999999999999999988653
No 413
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.75 E-value=0.024 Score=51.43 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=21.3
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997754
No 414
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=94.75 E-value=0.044 Score=51.43 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=21.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
+.|+|+|-|||||||.+..+..-...
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~ 26 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAE 26 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHh
Confidence 46899999999999999888765444
No 415
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.75 E-value=0.039 Score=51.49 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=25.7
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCC
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKL 156 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~ 156 (532)
....|.++||+|+||||..+.++.+...++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 4567889999999999999999987766543
No 416
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=94.73 E-value=0.064 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|+|+|.+|+|||||+..+...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887754
No 417
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.72 E-value=0.027 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEccCCCchHHHHHHHHHHhh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987653
No 418
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=94.72 E-value=0.1 Score=45.98 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|+++|..|+|||||...+...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 689999999999999988653
No 419
>PRK13975 thymidylate kinase; Provisional
Probab=94.69 E-value=0.029 Score=51.28 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=23.3
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..|+|.|+.|+||||+|+.+++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999987653
No 420
>PRK05439 pantothenate kinase; Provisional
Probab=94.68 E-value=0.045 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=23.3
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
+..-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 556799999999999999999887643
No 421
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.68 E-value=0.12 Score=49.68 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE----------------EeccCchhhHHHHH
Q 048213 112 MSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI----------------FVEESESGRARSLC 175 (532)
Q Consensus 112 ~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~----------------~~~~~~~~~~~~l~ 175 (532)
..+..+.+..+....-.++.|.|+.|+||||++..+.+..... ...... ............+.
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~-~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~ 143 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTP-EKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLR 143 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCC-CCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHH
Confidence 3333333333444445689999999999999999886643211 011111 01111122345556
Q ss_pred HHHhccCcEEEEEcCCCCccccc
Q 048213 176 NRLKKEKMILVILDNIWENLDFH 198 (532)
Q Consensus 176 ~~l~~~k~~LlVlDdv~~~~~~~ 198 (532)
..|.. ..=.|+++++.+.+...
T Consensus 144 ~~lR~-~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 144 AILRQ-DPDIIMVGEIRDAETAE 165 (264)
T ss_pred HHhcc-CCCEEEeccCCCHHHHH
Confidence 66654 45678888888876544
No 422
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=94.67 E-value=0.088 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.|.++|.+|+|||||...+.+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~ 23 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN 23 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999887654
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.67 E-value=0.029 Score=45.30 Aligned_cols=22 Identities=36% Similarity=0.212 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCchHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVA 148 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~ 148 (532)
-..++|+|+.|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999975
No 424
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.66 E-value=0.031 Score=49.88 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 5699999999999999999998643
No 425
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.66 E-value=0.033 Score=48.69 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=25.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
.++++|+|+.|+|||||...+....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4789999999999999999998877765
No 426
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.66 E-value=0.023 Score=50.24 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~ 151 (532)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998764
No 427
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.66 E-value=0.032 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 428
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.095 Score=56.96 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=37.6
Q ss_pred cccccchHHHHHHHHHhc---------CCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 106 EAFESRMSTFNDILNALK---------SPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~---------~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++|-++.++.+.+.+. +.+..+....|+.|+|||-||+.++...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L 545 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL 545 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence 457899999999888876 2345677889999999999999998765
No 429
>PRK04296 thymidine kinase; Provisional
Probab=94.61 E-value=0.09 Score=47.79 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=21.5
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.++.|+|+.|.||||+|..++.+..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4778999999999999998887654
No 430
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=94.60 E-value=0.079 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=20.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-|.|+|.+|+|||||+..+.+.
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999988754
No 431
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=94.59 E-value=0.071 Score=46.66 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=18.7
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|.++|.+|+|||+|...+...
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHccc
Confidence 678999999999999988764
No 432
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.57 E-value=0.1 Score=45.54 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~ 151 (532)
|+|+|.+|+|||||...+....
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998764
No 433
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.56 E-value=0.032 Score=48.83 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=25.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhccCCCCEEE
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI 161 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 161 (532)
+++|+|+.|+|||||+..+....+.+ .+...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~v 32 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVAT 32 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEE
Confidence 57899999999999999999876543 244433
No 434
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=94.55 E-value=0.1 Score=45.56 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=19.3
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|+++|.+|+|||||...+...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998754
No 435
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.54 E-value=0.054 Score=51.55 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=32.5
Q ss_pred HHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhhccCC
Q 048213 116 NDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKL 156 (532)
Q Consensus 116 ~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~ 156 (532)
.+++..+. .++..+|+|.|.+|+|||||.-.+-.....+++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 45555555 677889999999999999999998887765543
No 436
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.54 E-value=0.11 Score=52.23 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-.++.++|+.|+||||++..++....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999987654
No 437
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=94.51 E-value=0.11 Score=45.50 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=17.8
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~ 149 (532)
|+++|.+|+|||||...+..
T Consensus 3 v~~~G~~~~GKTsli~~l~~ 22 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKL 22 (159)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 77899999999999999853
No 438
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=94.51 E-value=0.097 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-|+|+|.+|+|||||...+.+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999888653
No 439
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.49 E-value=0.08 Score=54.40 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.3
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+|.++|..|+||||+|..++.....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4679999999999999999999876654
No 440
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=94.49 E-value=0.095 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|+++|.+|+|||||+..+.+.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999987654
No 441
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.49 E-value=0.058 Score=53.53 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=38.1
Q ss_pred cccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 106 EAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++|-++.+..++-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4678999988888777777666778899999999999999997543
No 442
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.48 E-value=0.02 Score=53.39 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=54.6
Q ss_pred hhccccccEEEeccccccCc---------------ccccccccccEEeecccccccc----------ccCCcceEEeccc
Q 048213 388 LGLLTNLQTLCLYYCKLQDT---------------SVLGELKILEILRLRVNELTRA----------GSSQLKHLSVRGL 442 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~~l~~~---------------~~i~~l~~L~~L~l~~~~l~~~----------~l~~Lr~L~l~~~ 442 (532)
|+.-++|.+|.+++|.+... ..+.+-|.|++.....|.+..- ....|+.+.+..|
T Consensus 116 is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN 195 (388)
T COG5238 116 ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN 195 (388)
T ss_pred HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeec
Confidence 34445666666666644320 1123445566666555544432 1235666666666
Q ss_pred cccCCCCC-----cccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCC
Q 048213 443 RASAPNPT-----ESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 443 ~~~~~~~~-----~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
.+ -++.. ..+..+++|+.|||..|-++...+..+....+.+++|+.|.+.+|-
T Consensus 196 gI-rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 196 GI-RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred Cc-CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 44 22211 1234456677777777755544444333333444556666666664
No 443
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.47 E-value=0.0041 Score=61.30 Aligned_cols=92 Identities=21% Similarity=0.227 Sum_probs=47.2
Q ss_pred ccCCcceEEeccccccCCCCCccc-ccCCCCCEEecCCc-ccccccccccccccccCCCccEEEeccCCCCCccchhhhh
Q 048213 430 GSSQLKHLSVRGLRASAPNPTESE-VALPKLETVCLSSI-NIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSII 507 (532)
Q Consensus 430 ~l~~Lr~L~l~~~~~~~~~~~~~~-~~l~~L~~L~L~~~-~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~ 507 (532)
.++++.+|.+.+|.........++ ...++|++|+|..| +|+.. .+....-..++|++|+++.|+.+..-.-..+.
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~---~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV---SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH---HHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 567777777777754122222233 24566777777665 44422 11100012367777777777665542122223
Q ss_pred hcCCCccEEEeecCCcc
Q 048213 508 SSFVGLQCLEICECPVL 524 (532)
Q Consensus 508 ~~L~~L~~L~l~~c~~L 524 (532)
.++.+|+.+.+.||..+
T Consensus 239 rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLEL 255 (483)
T ss_pred ccchhhhhhhhcccccc
Confidence 45556666666666544
No 444
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.47 E-value=0.06 Score=44.49 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEccCCCchHHHHHHHHHHhhc
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
+.+.|.||+||||++..++.....
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~ 25 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAE 25 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999998876543
No 445
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.46 E-value=0.045 Score=47.83 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 114 TFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 114 ~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.++++.+.+.. ++++++|..|+|||||...+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 36666776644 799999999999999999998764
No 446
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.46 E-value=0.03 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
++.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988653
No 447
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.46 E-value=0.053 Score=53.84 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=40.9
Q ss_pred cccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 104 DYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
+-..++|-++.+..++..+.+....-|.|.|..|+||||+|+.+++-.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 346788999998888888878888888899999999999999997643
No 448
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=94.45 E-value=0.13 Score=45.24 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=18.1
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~ 149 (532)
|+++|.+|+|||+|+..+..
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999998864
No 449
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.44 E-value=0.083 Score=48.00 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|+|+|.+|+|||||+..+...
T Consensus 3 i~vvG~~~vGKTSli~~~~~~ 23 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDG 23 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999887654
No 450
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.44 E-value=0.097 Score=48.33 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-.++.|+|++|+|||++|.+++....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~ 37 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA 37 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999877654
No 451
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=94.44 E-value=0.11 Score=45.66 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-|+|+|.+|+|||||+..+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999988754
No 452
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=94.44 E-value=0.11 Score=46.60 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=19.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
+-|+|+|.+|+|||||+..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998754
No 453
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.44 E-value=0.09 Score=47.91 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+|+|.|+.|+||||+++.+++...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 454
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.063 Score=56.74 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=45.6
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE------EeccCchhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI------FVEESESGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~------~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
.-|.++|++|.|||-||.+++.....+ |-.+- -.....++....++++-+..+.|.|.+|..++.
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~--fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR--FISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee--EEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEecccccc
Confidence 458899999999999999998875544 21111 001122345566777777789999999998754
No 455
>PRK13948 shikimate kinase; Provisional
Probab=94.42 E-value=0.041 Score=49.45 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+.|.++|+.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999988754
No 456
>PRK13946 shikimate kinase; Provisional
Probab=94.41 E-value=0.035 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+.|.++|+.|+||||+++.+++...
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998764
No 457
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.40 E-value=0.037 Score=45.81 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.0
Q ss_pred EEEEccCCCchHHHHHHHHHHhhc
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
|.|+|..|+|||||.+.+......
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999876543
No 458
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.40 E-value=0.053 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++++.|.+|+||||++..+......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA 25 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4789999999999999998765543
No 459
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=94.39 E-value=0.081 Score=48.09 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=19.1
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|+|+|.+|+|||||...+.++
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~ 23 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHH 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998765
No 460
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=94.39 E-value=0.11 Score=46.30 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|+|+|.+|+|||||+..+...
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~ 25 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISH 25 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999887653
No 461
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=94.37 E-value=0.043 Score=52.78 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=23.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
++|+|.|-||+||||+|..++.....+
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~ 29 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSND 29 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 678889999999999999988866543
No 462
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.36 E-value=0.069 Score=47.39 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=31.0
Q ss_pred cccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 108 FESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 108 ~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
++|....+.++++.+. .....-|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 3577777777777665 2223566699999999999999998854
No 463
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.35 E-value=0.093 Score=47.52 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
...|+|+|++|+|||||...+...
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 455699999999999999998763
No 464
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=94.35 E-value=0.17 Score=45.58 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=23.0
Q ss_pred HHHHhcCCCceEEEEEccCCCchHHHHHHHHH
Q 048213 118 ILNALKSPDVNMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 118 i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
+.+.+......-|+++|.+|+|||+|+..+..
T Consensus 8 ~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~ 39 (182)
T PTZ00133 8 AFKSLFGKKEVRILMVGLDAAGKTTILYKLKL 39 (182)
T ss_pred HHHHhcCCCccEEEEEcCCCCCHHHHHHHHhc
Confidence 34434333334588999999999999999864
No 465
>PLN02772 guanylate kinase
Probab=94.34 E-value=0.097 Score=52.43 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+++.|+|+.|+||+||++.+..+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 45789999999999999999998764
No 466
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=94.34 E-value=0.11 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|+|+|.+|+|||+|...+.+.
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999998754
No 467
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.034 Score=48.53 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEEEccCCCchHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVA 148 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~ 148 (532)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 468
>PLN02200 adenylate kinase family protein
Probab=94.31 E-value=0.043 Score=51.63 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+|.|.|++|+||||+|+.++....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346889999999999999999987653
No 469
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=94.29 E-value=0.12 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=20.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998764
No 470
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=94.27 E-value=0.11 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|+++|.+|+|||||+..+.+.
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35789999999999999998765
No 471
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.26 E-value=0.091 Score=54.13 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.-..++|.|..|+|||||+..+.+....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~a 167 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATV 167 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcc
Confidence 3467999999999999999999987654
No 472
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.25 E-value=0.19 Score=47.04 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-.++.|+|.+|+|||+||..++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 47999999999999999999876543
No 473
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.24 E-value=0.062 Score=56.46 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=37.5
Q ss_pred ccccccchHHHHHHHHHhcC-----CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 105 YEAFESRMSTFNDILNALKS-----PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~-----~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+.--.+-++++..||.+ ...+++.+.|++|+||||.++.+++...
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455567778888888872 2357899999999999999999998743
No 474
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.24 E-value=0.067 Score=47.76 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhc
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++.++|++|+||||++..++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999998876543
No 475
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=94.22 E-value=0.17 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.2
Q ss_pred EEEEccCCCchHHHHHHHHHHhh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
|+|+|..|+|||||...+.....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999977643
No 476
>PTZ00369 Ras-like protein; Provisional
Probab=94.21 E-value=0.09 Score=47.68 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|+|+|.+|+|||||+..+.+.
T Consensus 7 Ki~iiG~~~~GKTsLi~~~~~~ 28 (189)
T PTZ00369 7 KLVVVGGGGVGKSALTIQFIQN 28 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4668999999999999988764
No 477
>PRK04182 cytidylate kinase; Provisional
Probab=94.20 E-value=0.043 Score=49.25 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=21.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+|+|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999988654
No 478
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.19 E-value=0.093 Score=51.07 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=43.3
Q ss_pred cccccccchHHHHH---HHHHhcCC--CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE
Q 048213 104 DYEAFESRMSTFND---ILNALKSP--DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI 161 (532)
Q Consensus 104 ~~~~~~gR~~~~~~---i~~~l~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 161 (532)
...+|+|-.+..+. |+++..++ .-+.|.|+|++|.|||+||..+.+..-..-.|-...
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~is 99 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAIS 99 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeec
Confidence 35678997665543 55555544 348999999999999999999999877666675543
No 479
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.18 E-value=0.11 Score=49.43 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.-..++|.|-.|+|||+|+..+.++..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhh
Confidence 346789999999999999999888754
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.17 E-value=0.043 Score=49.20 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+++|+|+.|+||||+++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998654
No 481
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.17 E-value=0.044 Score=50.55 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHH
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
...+.+.|+|++|+|||||+..+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34678999999999999999999754
No 482
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.16 E-value=0.084 Score=52.05 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=46.2
Q ss_pred cccccccchHHHHH---HHHHhcCCC--ceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc--CchhhHHHHHH
Q 048213 104 DYEAFESRMSTFND---ILNALKSPD--VNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE--SESGRARSLCN 176 (532)
Q Consensus 104 ~~~~~~gR~~~~~~---i~~~l~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~--~~~~~~~~l~~ 176 (532)
...++||..+..+. +++++.++. -+.+.+.|++|.|||+||..+++....+-.|-.....+. ..-...+.+.+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~L~q 101 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEALTQ 101 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHHHHH
Confidence 35689998766554 455555554 489999999999999999999998776644544431111 12223455666
Q ss_pred HHh
Q 048213 177 RLK 179 (532)
Q Consensus 177 ~l~ 179 (532)
.++
T Consensus 102 a~R 104 (398)
T PF06068_consen 102 AFR 104 (398)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 483
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.16 E-value=0.04 Score=49.95 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.-.|++|+|++|+|||||.+.+..-..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 347999999999999999999865433
No 484
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.13 E-value=0.17 Score=51.53 Aligned_cols=47 Identities=17% Similarity=0.013 Sum_probs=34.6
Q ss_pred cccccchHHHHHHHHHhc-------C---C--------CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 106 EAFESRMSTFNDILNALK-------S---P--------DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~-------~---~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..++|.++.++.+...+. . . ....+.++|++|+|||++|+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 346888888877765541 1 0 125789999999999999999987654
No 485
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.13 E-value=0.18 Score=44.50 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
...|+++|.+|+|||||..++...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~ 30 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQG 30 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999998743
No 486
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=94.12 E-value=0.15 Score=44.63 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=19.1
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|+++|.+|+|||||...+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998764
No 487
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=94.12 E-value=0.11 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|.++|.+|+|||+|+..+...
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~ 23 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEG 23 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999888664
No 488
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=94.12 E-value=0.14 Score=45.34 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=19.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|.++|.+|+|||||+..+.+.
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~ 28 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTN 28 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988753
No 489
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.11 E-value=0.14 Score=47.50 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=53.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh--hccC-----------CCCEEE--Ee-ccCc-------hhhHHHHHHHHh-ccC
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA--ENEK-----------LFDRVI--FV-EESE-------SGRARSLCNRLK-KEK 182 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~--~~~~-----------~F~~~~--~~-~~~~-------~~~~~~l~~~l~-~~k 182 (532)
.+++.|+|+.|.||||+.+.+.... ...+ .|+... +. ..+. ......+...+. ..+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 4899999999999999999987432 1111 112111 00 0111 111222322222 147
Q ss_pred cEEEEEcCCCCcccc-------cccccccCCC-CCCeEEEEeecChHHhh
Q 048213 183 MILVILDNIWENLDF-------HAVGIPHGDD-HKGCKVLLTARSLDVLS 224 (532)
Q Consensus 183 ~~LlVlDdv~~~~~~-------~~l~~~~~~~-~~gs~ilvTtr~~~v~~ 224 (532)
+-|+++|.....-+. ..+...+... ..+..+|++|.....+.
T Consensus 109 ~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 109 RSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 799999998754221 1122222222 23457999999988764
No 490
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=94.11 E-value=0.18 Score=45.02 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=20.5
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
|-|+++|..|+|||||+.++.+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~ 23 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLEL 23 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHH
Confidence 46899999999999999998774
No 491
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.09 E-value=0.14 Score=47.11 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++|+|.|+.|+||||+++.+.+....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999987644
No 492
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.08 E-value=0.11 Score=54.63 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.++..+|+|.|+.|+||||||+.+....
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3567899999999999999999998753
No 493
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.08 E-value=0.13 Score=47.10 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=18.8
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 048213 130 LGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~ 150 (532)
|+|+|.+|+|||||...+.+.
T Consensus 3 ivivG~~~vGKTsli~~l~~~ 23 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988764
No 494
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=94.05 E-value=0.13 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.107 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-|+|+|.+|+|||||...+.+..
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~ 25 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDS 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 495
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.05 E-value=0.048 Score=48.37 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEccCCCchHHHHHHHHHHhh
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
|.|.|..|+|||||++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 67999999999999999998764
No 496
>PRK08149 ATP synthase SpaL; Validated
Probab=94.04 E-value=0.1 Score=53.15 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.-..++|+|..|+|||||+..+++..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC
Confidence 34689999999999999999988744
No 497
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.04 E-value=0.052 Score=52.19 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=25.0
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccC
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEK 155 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~ 155 (532)
++++|+|.+|+|||||+..+......++
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 5899999999999999999998877664
No 498
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=94.04 E-value=0.096 Score=48.83 Aligned_cols=23 Identities=39% Similarity=0.255 Sum_probs=19.5
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|.++|.+|+|||||...+...
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~ 36 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 45889999999999999987654
No 499
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.03 E-value=0.069 Score=53.88 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=35.8
Q ss_pred cccccchHHHHHHHHHhcC--------------CCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 106 EAFESRMSTFNDILNALKS--------------PDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~--------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..++|.++.++.+.-.+.. ...+-|.++|++|+|||++|+.++.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3577877777776554442 12467899999999999999999987543
No 500
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.03 E-value=0.071 Score=52.78 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=36.9
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-..++|.++.++.+.-.+.+.+..-+.+.|..|.||||+|+.+..-.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 45688999988887755544444568899999999999999997643
Done!