Query 048213
Match_columns 532
No_of_seqs 372 out of 2984
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 12:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-37 6.3E-42 329.2 15.4 258 109-383 131-444 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 8.2E-33 2.8E-37 322.3 18.7 245 102-357 120-408 (1249)
3 1vt4_I APAF-1 related killer D 100.0 7.9E-32 2.7E-36 290.8 12.9 219 108-357 130-400 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 6E-29 2E-33 267.2 18.8 241 103-356 121-407 (591)
5 4fcg_A Uncharacterized protein 99.6 4.2E-16 1.4E-20 154.3 11.5 153 368-529 126-295 (328)
6 4fcg_A Uncharacterized protein 99.6 7.8E-16 2.7E-20 152.4 12.5 153 368-529 103-271 (328)
7 4ezg_A Putative uncharacterize 99.6 4.8E-15 1.7E-19 135.3 11.0 147 364-522 39-192 (197)
8 3rfs_A Internalin B, repeat mo 99.6 1.6E-14 5.5E-19 139.0 14.7 146 369-522 63-216 (272)
9 3e6j_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 135.8 12.2 140 373-522 23-170 (229)
10 3m19_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 137.2 12.2 146 371-523 37-191 (251)
11 2o6q_A Variable lymphocyte rec 99.5 2.3E-14 8E-19 137.6 12.4 144 372-522 64-216 (270)
12 3rfs_A Internalin B, repeat mo 99.5 1.7E-14 5.9E-19 138.7 11.1 171 349-528 21-197 (272)
13 2v9t_B SLIT homolog 2 protein 99.5 4.4E-14 1.5E-18 131.3 11.4 141 373-522 15-163 (220)
14 1h6t_A Internalin B; cell adhe 99.5 1.1E-13 3.7E-18 134.4 14.0 149 361-521 38-210 (291)
15 3m19_A Variable lymphocyte rec 99.5 6.6E-14 2.3E-18 132.9 11.9 147 372-528 17-171 (251)
16 2o6q_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 134.1 12.1 150 371-528 39-197 (270)
17 1p9a_G Platelet glycoprotein I 99.5 5.5E-14 1.9E-18 136.4 10.9 143 372-521 34-182 (290)
18 1xeu_A Internalin C; cellular 99.5 1.3E-13 4.4E-18 131.8 13.2 161 348-522 20-183 (263)
19 1h6u_A Internalin H; cell adhe 99.5 1.9E-13 6.4E-18 133.9 14.5 136 372-521 66-205 (308)
20 2v70_A SLIT-2, SLIT homolog 2 99.5 9.3E-14 3.2E-18 129.1 11.6 141 373-522 15-164 (220)
21 1h6t_A Internalin B; cell adhe 99.5 7.5E-14 2.6E-18 135.6 10.7 124 367-501 88-215 (291)
22 1m9s_A Internalin B; cell inva 99.5 2.3E-13 7.8E-18 145.1 14.2 119 350-472 24-146 (605)
23 1h6u_A Internalin H; cell adhe 99.5 1.9E-13 6.4E-18 134.0 12.4 141 368-522 84-228 (308)
24 1ozn_A Reticulon 4 receptor; N 99.5 1.8E-13 6E-18 132.5 11.1 145 371-522 82-236 (285)
25 1p9a_G Platelet glycoprotein I 99.5 1.7E-13 5.8E-18 133.0 10.9 147 368-523 54-207 (290)
26 1ozn_A Reticulon 4 receptor; N 99.5 2E-13 6.8E-18 132.2 11.3 151 369-527 56-216 (285)
27 2ell_A Acidic leucine-rich nuc 99.5 2.1E-13 7.3E-18 120.9 10.5 133 390-531 22-166 (168)
28 2o6s_A Variable lymphocyte rec 99.5 4.2E-13 1.4E-17 123.4 12.3 140 374-522 12-159 (208)
29 4ezg_A Putative uncharacterize 99.4 3.3E-13 1.1E-17 123.1 10.9 126 388-522 40-170 (197)
30 1m9s_A Internalin B; cell inva 99.4 2.2E-13 7.4E-18 145.3 10.6 145 365-523 61-209 (605)
31 2fna_A Conserved hypothetical 99.4 2.5E-12 8.4E-17 128.5 17.5 171 103-286 10-254 (357)
32 2z62_A TOLL-like receptor 4, v 99.4 3.3E-13 1.1E-17 130.0 9.4 97 373-470 32-137 (276)
33 1ogq_A PGIP-2, polygalacturona 99.4 3.7E-13 1.3E-17 132.1 9.8 142 372-522 79-232 (313)
34 1ogq_A PGIP-2, polygalacturona 99.4 3.8E-13 1.3E-17 132.1 9.5 149 370-527 126-284 (313)
35 2z66_A Variable lymphocyte rec 99.4 2.7E-13 9.3E-18 132.6 8.3 144 372-522 81-234 (306)
36 2xot_A Amphoterin-induced prot 99.4 2.5E-13 8.6E-18 136.2 8.2 147 372-522 42-200 (361)
37 1xeu_A Internalin C; cellular 99.4 2.2E-12 7.5E-17 123.2 14.3 141 367-522 17-161 (263)
38 2xwt_C Thyrotropin receptor; s 99.4 2.6E-13 8.9E-18 127.7 7.7 148 372-527 58-220 (239)
39 2xwt_C Thyrotropin receptor; s 99.4 4E-13 1.4E-17 126.5 8.5 148 371-528 33-196 (239)
40 3zyi_A Leucine-rich repeat-con 99.4 7.2E-13 2.5E-17 137.1 11.1 142 372-522 78-229 (452)
41 2z66_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 131.8 8.2 145 370-522 53-210 (306)
42 2id5_A Lingo-1, leucine rich r 99.4 5E-13 1.7E-17 139.3 9.7 149 371-526 58-215 (477)
43 2z62_A TOLL-like receptor 4, v 99.4 1.2E-12 4.3E-17 125.9 11.3 151 369-521 52-234 (276)
44 3rgz_A Protein brassinosteroid 99.4 9E-13 3.1E-17 145.5 11.6 152 370-529 491-722 (768)
45 1a9n_A U2A', U2A'; complex (nu 99.4 7.3E-13 2.5E-17 118.4 8.6 127 388-523 15-152 (176)
46 2je0_A Acidic leucine-rich nuc 99.4 6.4E-13 2.2E-17 115.2 8.0 123 391-520 16-149 (149)
47 3zyj_A Leucine-rich repeat-con 99.4 1.1E-12 3.9E-17 135.1 11.2 141 372-521 67-217 (440)
48 2qen_A Walker-type ATPase; unk 99.4 1.1E-11 3.8E-16 123.4 18.0 175 102-286 8-250 (350)
49 2z80_A TOLL-like receptor 2, v 99.4 7.9E-13 2.7E-17 132.1 9.6 144 371-522 54-209 (353)
50 2id5_A Lingo-1, leucine rich r 99.4 9.4E-13 3.2E-17 137.2 10.4 145 371-522 34-187 (477)
51 1xku_A Decorin; proteoglycan, 99.4 1.7E-12 5.9E-17 128.4 11.4 147 373-521 56-250 (330)
52 2z80_A TOLL-like receptor 2, v 99.4 7.2E-13 2.4E-17 132.4 8.7 151 365-522 72-233 (353)
53 3oja_B Anopheles plasmodium-re 99.4 1.7E-12 6E-17 139.0 11.7 75 370-444 100-183 (597)
54 1wwl_A Monocyte differentiatio 99.4 1E-12 3.4E-17 129.0 8.9 142 369-522 149-307 (312)
55 4fmz_A Internalin; leucine ric 99.4 6.1E-12 2.1E-16 125.2 14.4 147 364-521 39-209 (347)
56 3rgz_A Protein brassinosteroid 99.4 1.8E-12 6.2E-17 143.1 11.2 148 372-527 397-554 (768)
57 3zyj_A Leucine-rich repeat-con 99.4 1.7E-12 5.9E-17 133.8 10.4 143 373-522 140-290 (440)
58 2ell_A Acidic leucine-rich nuc 99.4 1.1E-12 3.9E-17 116.2 7.8 122 372-501 27-162 (168)
59 3oja_B Anopheles plasmodium-re 99.3 1.3E-12 4.6E-17 140.0 9.6 143 371-522 125-335 (597)
60 2xot_A Amphoterin-induced prot 99.3 2E-12 7E-17 129.5 10.3 147 372-528 21-179 (361)
61 3o6n_A APL1; leucine-rich repe 99.3 3.4E-12 1.2E-16 129.3 12.0 75 370-444 94-177 (390)
62 3zyi_A Leucine-rich repeat-con 99.3 1.8E-12 6.2E-17 134.1 10.1 147 372-528 126-282 (452)
63 3vq2_A TLR4, TOLL-like recepto 99.3 3E-12 1E-16 137.5 11.8 138 374-521 16-163 (606)
64 4g8a_A TOLL-like receptor 4; l 99.3 2.9E-12 1E-16 138.1 11.4 122 393-521 53-183 (635)
65 4ecn_A Leucine-rich repeat pro 99.3 1.2E-12 4.2E-17 144.5 8.5 152 365-528 444-635 (876)
66 3o6n_A APL1; leucine-rich repe 99.3 2.2E-12 7.5E-17 130.7 9.6 82 432-522 248-329 (390)
67 2z7x_B TOLL-like receptor 1, v 99.3 2.3E-12 7.7E-17 135.8 9.9 144 370-523 325-480 (520)
68 3o53_A Protein LRIM1, AGAP0063 99.3 2E-12 6.7E-17 127.2 8.7 144 371-521 36-201 (317)
69 1njg_A DNA polymerase III subu 99.3 3.9E-11 1.3E-15 112.7 17.3 179 105-285 22-231 (250)
70 3bz5_A Internalin-J, INLJ; leu 99.3 1E-11 3.4E-16 128.4 14.1 142 363-521 36-180 (457)
71 3oja_A Leucine-rich immune mol 99.3 2.4E-12 8.1E-17 134.3 9.4 144 370-521 35-201 (487)
72 1xku_A Decorin; proteoglycan, 99.3 4.8E-12 1.6E-16 125.1 11.2 144 371-522 123-274 (330)
73 2z81_A CD282 antigen, TOLL-lik 99.3 2.4E-12 8.1E-17 136.6 9.5 147 370-522 27-183 (549)
74 4fmz_A Internalin; leucine ric 99.3 8.3E-12 2.9E-16 124.2 12.6 137 372-522 91-232 (347)
75 1w5s_A Origin recognition comp 99.3 3.4E-11 1.2E-15 122.8 17.0 221 105-341 21-320 (412)
76 4glp_A Monocyte differentiatio 99.3 1.9E-12 6.6E-17 126.9 7.2 140 371-522 147-305 (310)
77 3vq2_A TLR4, TOLL-like recepto 99.3 2.3E-12 7.7E-17 138.5 8.4 116 373-494 36-162 (606)
78 2v9t_B SLIT homolog 2 protein 99.3 3.9E-12 1.3E-16 118.0 8.6 121 371-496 34-163 (220)
79 3t6q_A CD180 antigen; protein- 99.3 3.9E-12 1.3E-16 136.6 9.7 143 372-522 36-190 (606)
80 3o53_A Protein LRIM1, AGAP0063 99.3 3.3E-12 1.1E-16 125.6 8.0 140 372-524 102-250 (317)
81 4g8a_A TOLL-like receptor 4; l 99.3 4.2E-12 1.4E-16 136.8 9.3 136 371-514 54-200 (635)
82 3v47_A TOLL-like receptor 5B a 99.3 4E-12 1.4E-16 131.5 8.6 126 392-524 275-408 (455)
83 2o6s_A Variable lymphocyte rec 99.3 3.4E-12 1.2E-16 117.3 7.2 121 371-496 30-159 (208)
84 2je0_A Acidic leucine-rich nuc 99.3 2.4E-12 8.2E-17 111.6 5.8 118 371-494 19-149 (149)
85 4eco_A Uncharacterized protein 99.3 1.5E-12 5.2E-17 140.5 5.6 147 365-522 202-388 (636)
86 3e6j_A Variable lymphocyte rec 99.3 7.8E-12 2.7E-16 116.8 9.7 121 370-496 41-170 (229)
87 2ast_B S-phase kinase-associat 99.3 3.2E-13 1.1E-17 133.9 0.1 134 384-524 110-260 (336)
88 2z63_A TOLL-like receptor 4, v 99.3 3.1E-12 1E-16 136.3 7.7 147 370-523 374-530 (570)
89 2ast_B S-phase kinase-associat 99.3 8.5E-13 2.9E-17 130.8 3.1 145 371-521 120-282 (336)
90 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 5.2E-12 1.8E-16 134.4 9.3 144 370-523 354-509 (562)
91 3v47_A TOLL-like receptor 5B a 99.3 3.6E-12 1.2E-16 131.8 7.9 129 371-505 32-173 (455)
92 2z63_A TOLL-like receptor 4, v 99.3 5E-12 1.7E-16 134.7 9.2 142 372-521 31-187 (570)
93 1wwl_A Monocyte differentiatio 99.3 2E-12 6.8E-17 126.9 5.5 141 372-521 124-284 (312)
94 3oja_A Leucine-rich immune mol 99.3 4.5E-12 1.5E-16 132.2 8.5 141 371-524 101-250 (487)
95 2v70_A SLIT-2, SLIT homolog 2 99.3 7E-12 2.4E-16 116.3 8.6 120 372-496 35-164 (220)
96 2z81_A CD282 antigen, TOLL-lik 99.3 5E-12 1.7E-16 134.1 8.5 149 366-522 47-207 (549)
97 2ft3_A Biglycan; proteoglycan, 99.3 7.9E-12 2.7E-16 123.7 9.4 142 371-521 125-274 (332)
98 1ziw_A TOLL-like receptor 3; i 99.3 1.3E-11 4.3E-16 134.5 11.5 147 370-522 26-182 (680)
99 2wfh_A SLIT homolog 2 protein 99.3 1.5E-11 5.2E-16 111.5 9.9 115 373-494 14-135 (193)
100 1ziw_A TOLL-like receptor 3; i 99.3 1.5E-11 5.2E-16 133.9 11.4 153 365-522 45-206 (680)
101 1w8a_A SLIT protein; signaling 99.2 2.4E-11 8E-16 110.2 10.7 117 373-496 12-137 (192)
102 4eco_A Uncharacterized protein 99.2 1.7E-11 5.8E-16 132.3 11.1 129 390-528 431-582 (636)
103 2chg_A Replication factor C sm 99.2 7.5E-11 2.6E-15 109.1 14.1 179 105-284 16-206 (226)
104 2wfh_A SLIT homolog 2 protein 99.2 4.5E-11 1.5E-15 108.4 11.9 119 395-522 13-137 (193)
105 3cvr_A Invasion plasmid antige 99.2 2E-11 6.9E-16 128.8 10.8 141 370-524 101-243 (571)
106 1o6v_A Internalin A; bacterial 99.2 3.9E-11 1.3E-15 124.5 12.8 137 372-522 224-364 (466)
107 3t6q_A CD180 antigen; protein- 99.2 3E-11 1E-15 129.7 11.8 148 369-522 278-436 (606)
108 1a9n_A U2A', U2A'; complex (nu 99.2 8.7E-12 3E-16 111.4 6.4 118 371-496 21-151 (176)
109 4b8c_D Glucose-repressible alc 99.2 1.2E-11 4E-16 135.2 8.1 115 384-506 216-336 (727)
110 4ecn_A Leucine-rich repeat pro 99.2 3E-11 1E-15 133.5 11.5 107 412-528 695-822 (876)
111 1o6v_A Internalin A; bacterial 99.2 3.9E-11 1.3E-15 124.5 11.4 142 367-522 241-386 (466)
112 1w8a_A SLIT protein; signaling 99.2 2.7E-11 9.3E-16 109.8 8.8 119 395-522 11-137 (192)
113 2ft3_A Biglycan; proteoglycan, 99.2 1.9E-11 6.5E-16 121.0 8.4 146 371-522 174-331 (332)
114 1dce_A Protein (RAB geranylger 99.2 3.9E-11 1.3E-15 127.1 10.7 117 393-518 442-567 (567)
115 3j0a_A TOLL-like receptor 5; m 99.2 3.7E-11 1.3E-15 134.0 11.0 143 372-522 27-185 (844)
116 2z7x_B TOLL-like receptor 1, v 99.2 2.6E-11 9E-16 127.6 9.2 136 372-523 3-150 (520)
117 3j0a_A TOLL-like receptor 5; m 99.2 2.5E-11 8.5E-16 135.4 9.3 140 374-522 9-159 (844)
118 3bz5_A Internalin-J, INLJ; leu 99.2 6.2E-11 2.1E-15 122.4 11.5 127 385-527 35-164 (457)
119 2o6r_A Variable lymphocyte rec 99.2 1.4E-10 4.7E-15 103.6 12.0 115 374-495 12-134 (177)
120 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 5.6E-11 1.9E-15 126.4 10.9 136 372-523 34-181 (562)
121 4ay9_X Follicle-stimulating ho 99.2 3.9E-11 1.4E-15 119.6 8.9 150 372-528 33-218 (350)
122 1ds9_A Outer arm dynein; leuci 99.2 2.1E-12 7.2E-17 117.8 -0.5 129 381-518 37-181 (198)
123 2qby_B CDC6 homolog 3, cell di 99.2 4.4E-10 1.5E-14 113.4 15.7 219 105-339 19-294 (384)
124 4glp_A Monocyte differentiatio 99.2 1.9E-11 6.4E-16 119.8 5.3 140 371-522 119-283 (310)
125 2qby_A CDC6 homolog 1, cell di 99.1 9.9E-10 3.4E-14 110.7 17.8 220 105-339 19-296 (386)
126 2o6r_A Variable lymphocyte rec 99.1 1.2E-10 4.2E-15 103.9 9.7 122 394-523 9-136 (177)
127 4b8c_D Glucose-repressible alc 99.1 2E-11 6.8E-16 133.3 5.0 105 370-476 225-335 (727)
128 1dce_A Protein (RAB geranylger 99.1 1E-10 3.6E-15 123.8 9.7 119 371-492 443-567 (567)
129 1jl5_A Outer protein YOPM; leu 99.1 1.5E-10 5.1E-15 119.5 10.6 133 371-521 113-247 (454)
130 3g06_A SSPH2 (leucine-rich rep 99.1 1.9E-10 6.7E-15 122.7 11.3 115 392-524 181-297 (622)
131 2ca6_A RAN GTPase-activating p 99.1 3.3E-11 1.1E-15 121.8 4.3 149 371-522 124-314 (386)
132 3g06_A SSPH2 (leucine-rich rep 99.1 2.2E-10 7.5E-15 122.3 10.8 67 373-443 44-112 (622)
133 3cvr_A Invasion plasmid antige 99.1 3E-10 1E-14 119.8 10.6 133 371-528 82-223 (571)
134 1sxj_B Activator 1 37 kDa subu 99.1 8.3E-10 2.8E-14 108.5 12.8 178 105-283 20-211 (323)
135 1ds9_A Outer arm dynein; leuci 99.0 1.2E-11 4.2E-16 112.6 -1.1 106 409-523 43-152 (198)
136 1jl5_A Outer protein YOPM; leu 99.0 1.2E-10 4.2E-15 120.1 5.0 143 365-527 30-188 (454)
137 2ca6_A RAN GTPase-activating p 99.0 9.2E-11 3.1E-15 118.6 3.8 146 370-522 95-285 (386)
138 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4.1E-14 96.8 10.3 82 433-521 31-112 (170)
139 2v1u_A Cell division control p 99.0 3.2E-09 1.1E-13 107.0 14.5 220 105-339 18-300 (387)
140 3goz_A Leucine-rich repeat-con 99.0 1.6E-10 5.4E-15 115.8 4.7 149 370-522 52-236 (362)
141 2r9u_A Variable lymphocyte rec 99.0 1.4E-09 4.9E-14 96.6 10.3 101 395-522 15-116 (174)
142 4ay9_X Follicle-stimulating ho 98.9 1.3E-09 4.3E-14 108.6 8.7 149 374-528 14-194 (350)
143 3goz_A Leucine-rich repeat-con 98.9 3.8E-10 1.3E-14 113.0 4.6 150 371-522 24-207 (362)
144 2r9u_A Variable lymphocyte rec 98.9 1.6E-09 5.4E-14 96.3 7.9 100 372-475 15-123 (174)
145 3g39_A Variable lymphocyte rec 98.9 2.1E-09 7.1E-14 95.2 8.1 97 373-472 13-117 (170)
146 1iqp_A RFCS; clamp loader, ext 98.9 5.2E-09 1.8E-13 102.9 11.7 180 105-285 24-215 (327)
147 3qfl_A MLA10; coiled-coil, (CC 98.8 2.7E-09 9.2E-14 87.1 4.8 45 4-48 37-82 (115)
148 1fnn_A CDC6P, cell division co 98.8 5.1E-08 1.8E-12 98.2 14.2 176 106-281 17-246 (389)
149 1z7x_W Ribonuclease inhibitor; 98.8 1.2E-09 4.2E-14 112.9 1.5 147 372-522 230-409 (461)
150 1z7x_W Ribonuclease inhibitor; 98.8 2.2E-09 7.6E-14 110.9 3.1 148 372-521 31-209 (461)
151 2chq_A Replication factor C sm 98.7 1.4E-07 4.9E-12 92.2 15.4 178 105-283 16-205 (319)
152 1jr3_A DNA polymerase III subu 98.7 1.4E-07 4.7E-12 94.5 15.2 177 106-283 16-222 (373)
153 1hqc_A RUVB; extended AAA-ATPa 98.7 1.4E-07 4.9E-12 92.5 13.9 175 105-285 11-214 (324)
154 1jbk_A CLPB protein; beta barr 98.7 3.6E-08 1.2E-12 88.5 7.7 142 105-247 21-194 (195)
155 3un9_A NLR family member X1; l 98.7 2.8E-09 9.7E-14 106.7 0.3 148 372-522 75-250 (372)
156 2ifg_A High affinity nerve gro 98.6 3.2E-08 1.1E-12 98.2 7.6 95 374-471 13-117 (347)
157 3h4m_A Proteasome-activating n 98.6 4E-07 1.4E-11 87.6 13.8 175 103-281 14-230 (285)
158 3sb4_A Hypothetical leucine ri 98.6 6.9E-08 2.4E-12 95.1 8.1 80 431-519 225-305 (329)
159 3ogk_B Coronatine-insensitive 98.6 6.9E-08 2.4E-12 103.0 7.6 70 372-441 167-252 (592)
160 3bos_A Putative DNA replicatio 98.5 1.6E-07 5.6E-12 87.6 8.8 173 106-282 28-217 (242)
161 3pvs_A Replication-associated 98.5 6.9E-07 2.4E-11 91.2 14.1 174 105-282 25-215 (447)
162 2ifg_A High affinity nerve gro 98.5 1.8E-07 6.1E-12 92.8 9.2 97 396-499 12-116 (347)
163 2p1m_B Transport inhibitor res 98.5 4.2E-08 1.4E-12 104.8 4.6 129 389-521 102-245 (594)
164 1d2n_A N-ethylmaleimide-sensit 98.5 2.4E-06 8.3E-11 81.4 16.6 187 107-301 34-262 (272)
165 2qz4_A Paraplegin; AAA+, SPG7, 98.5 1.9E-06 6.4E-11 81.6 15.4 176 105-282 5-222 (262)
166 1sxj_D Activator 1 41 kDa subu 98.5 3.1E-07 1.1E-11 91.2 9.7 176 105-281 36-234 (353)
167 2p1m_B Transport inhibitor res 98.5 5.1E-08 1.8E-12 104.0 3.6 37 484-521 288-324 (594)
168 3e4g_A ATP synthase subunit S, 98.5 1.1E-07 3.6E-12 83.5 4.5 40 486-526 115-154 (176)
169 3pfi_A Holliday junction ATP-d 98.5 1.5E-06 5.1E-11 85.8 13.4 173 105-283 28-228 (338)
170 3eie_A Vacuolar protein sortin 98.4 6.3E-06 2.2E-10 80.6 17.5 178 102-282 14-228 (322)
171 3un9_A NLR family member X1; l 98.4 3.6E-08 1.2E-12 98.7 1.2 129 391-522 71-222 (372)
172 1xwi_A SKD1 protein; VPS4B, AA 98.4 6E-06 2E-10 80.7 16.8 179 103-283 9-224 (322)
173 3d8b_A Fidgetin-like protein 1 98.4 5.5E-06 1.9E-10 82.3 16.1 174 105-283 83-296 (357)
174 3ogk_B Coronatine-insensitive 98.4 1.5E-07 5E-12 100.5 4.5 126 390-519 110-251 (592)
175 1sxj_A Activator 1 95 kDa subu 98.4 5.6E-06 1.9E-10 86.5 15.5 187 104-299 37-273 (516)
176 2qp9_X Vacuolar protein sortin 98.3 1.2E-05 4.2E-10 79.7 17.0 175 105-282 50-261 (355)
177 1sxj_E Activator 1 40 kDa subu 98.3 2.2E-06 7.4E-11 85.2 11.0 178 105-283 13-238 (354)
178 3vfd_A Spastin; ATPase, microt 98.3 1.8E-05 6E-10 79.7 17.6 176 103-283 112-327 (389)
179 2zan_A Vacuolar protein sortin 98.3 1.7E-05 5.9E-10 81.0 17.3 177 103-282 131-345 (444)
180 1a5t_A Delta prime, HOLB; zinc 98.3 1.1E-05 3.7E-10 79.4 15.1 164 112-281 8-204 (334)
181 3b9p_A CG5977-PA, isoform A; A 98.3 1.6E-05 5.5E-10 76.7 16.0 176 104-282 19-233 (297)
182 3syl_A Protein CBBX; photosynt 98.3 1.8E-06 6.2E-11 84.0 9.2 146 107-252 32-218 (309)
183 3u61_B DNA polymerase accessor 98.3 3.6E-06 1.2E-10 82.4 10.8 170 105-279 25-213 (324)
184 3sb4_A Hypothetical leucine ri 98.2 2.1E-06 7.1E-11 84.4 8.9 97 413-518 225-328 (329)
185 2p65_A Hypothetical protein PF 98.2 2.6E-06 9E-11 75.7 8.8 48 105-152 21-68 (187)
186 2ra8_A Uncharacterized protein 98.2 2.2E-06 7.5E-11 85.1 8.3 133 384-522 164-318 (362)
187 3te6_A Regulatory protein SIR3 98.2 9.9E-06 3.4E-10 78.3 12.2 147 106-252 20-212 (318)
188 4b4t_J 26S protease regulatory 98.2 1.4E-05 4.8E-10 79.3 13.0 168 104-275 146-354 (405)
189 3cf0_A Transitional endoplasmi 98.2 2E-05 6.8E-10 76.3 14.0 168 104-277 13-223 (301)
190 3uk6_A RUVB-like 2; hexameric 98.2 2.4E-05 8.1E-10 78.0 14.7 49 105-153 43-96 (368)
191 3pxg_A Negative regulator of g 98.1 1.5E-05 5E-10 82.2 12.3 144 105-252 179-339 (468)
192 1sxj_C Activator 1 40 kDa subu 98.1 2.2E-05 7.4E-10 77.4 12.9 172 105-278 24-208 (340)
193 2z4s_A Chromosomal replication 98.1 1.6E-05 5.3E-10 81.3 11.9 191 106-300 105-332 (440)
194 3e4g_A ATP synthase subunit S, 98.1 1.2E-06 4.2E-11 76.7 3.0 82 430-515 83-171 (176)
195 4b4t_L 26S protease subunit RP 98.0 4.6E-05 1.6E-09 76.8 13.7 167 105-275 180-387 (437)
196 4b4t_I 26S protease regulatory 98.0 0.0001 3.5E-09 73.4 15.7 168 103-274 179-387 (437)
197 4b4t_H 26S protease regulatory 98.0 5.8E-05 2E-09 75.9 13.6 166 105-274 208-414 (467)
198 3n70_A Transport activator; si 98.0 4.6E-06 1.6E-10 71.2 4.7 110 107-220 2-116 (145)
199 4b4t_M 26S protease regulatory 98.0 2.4E-05 8.3E-10 78.7 10.6 169 102-274 177-386 (434)
200 1qvr_A CLPB protein; coiled co 98.0 3E-05 1E-09 86.1 12.2 144 105-250 169-344 (854)
201 2gno_A DNA polymerase III, gam 97.9 3.8E-05 1.3E-09 74.2 10.7 139 111-251 2-152 (305)
202 3rw6_A Nuclear RNA export fact 97.9 2E-06 6.7E-11 81.2 1.5 82 430-518 168-258 (267)
203 1lv7_A FTSH; alpha/beta domain 97.9 0.00014 5E-09 68.3 13.5 171 104-280 10-223 (257)
204 1in4_A RUVB, holliday junction 97.9 0.00064 2.2E-08 66.6 18.6 193 104-301 23-251 (334)
205 3pxi_A Negative regulator of g 97.9 5E-05 1.7E-09 83.3 10.9 144 105-252 179-339 (758)
206 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00011 3.9E-09 80.5 13.8 145 105-251 185-362 (758)
207 1l8q_A Chromosomal replication 97.8 0.0001 3.4E-09 72.1 12.0 156 115-276 23-202 (324)
208 1io0_A Tropomodulin; LRR prote 97.8 7.3E-06 2.5E-10 73.2 3.4 57 388-444 32-105 (185)
209 1io0_A Tropomodulin; LRR prote 97.8 9.9E-06 3.4E-10 72.3 3.6 111 409-522 31-162 (185)
210 2ra8_A Uncharacterized protein 97.8 1.4E-05 4.8E-10 79.3 5.1 136 385-526 132-293 (362)
211 4b4t_K 26S protease regulatory 97.8 0.00015 5.2E-09 72.9 12.2 167 104-274 170-378 (428)
212 2r62_A Cell division protease 97.8 2.4E-05 8.4E-10 74.2 5.9 145 105-252 10-197 (268)
213 3hu3_A Transitional endoplasmi 97.8 0.00028 9.5E-09 72.7 14.2 173 105-281 203-414 (489)
214 3ec2_A DNA replication protein 97.7 1.8E-05 6.2E-10 70.2 4.4 104 111-219 19-142 (180)
215 2ce7_A Cell division protein F 97.7 0.00049 1.7E-08 70.4 15.5 167 105-275 15-221 (476)
216 3co5_A Putative two-component 97.7 1.4E-05 4.8E-10 68.0 2.6 106 106-219 4-115 (143)
217 4fcw_A Chaperone protein CLPB; 97.5 0.00017 5.9E-09 69.8 8.2 46 107-152 18-72 (311)
218 1ofh_A ATP-dependent HSL prote 97.5 0.00059 2E-08 65.9 11.5 47 106-152 15-75 (310)
219 2w58_A DNAI, primosome compone 97.4 0.0001 3.5E-09 66.5 5.0 104 114-220 37-159 (202)
220 4fdw_A Leucine rich hypothetic 97.4 0.00039 1.3E-08 70.0 9.2 122 388-521 222-355 (401)
221 4fdw_A Leucine rich hypothetic 97.4 0.00041 1.4E-08 69.8 9.2 102 409-520 221-332 (401)
222 3cf2_A TER ATPase, transitiona 97.4 0.00075 2.6E-08 73.1 11.7 167 105-275 203-407 (806)
223 1ixz_A ATP-dependent metallopr 97.4 0.0033 1.1E-07 58.7 14.5 165 104-274 14-220 (254)
224 3rw6_A Nuclear RNA export fact 97.3 0.00016 5.4E-09 68.1 5.1 85 389-492 167-258 (267)
225 2x8a_A Nuclear valosin-contain 97.2 0.002 6.8E-08 61.1 11.1 145 104-252 8-192 (274)
226 1iy2_A ATP-dependent metallopr 97.2 0.007 2.4E-07 57.4 14.7 167 103-275 37-245 (278)
227 2bjv_A PSP operon transcriptio 97.2 0.00035 1.2E-08 66.0 5.5 47 106-152 6-54 (265)
228 3m6a_A ATP-dependent protease 97.1 0.0016 5.6E-08 68.1 10.6 144 106-251 81-266 (543)
229 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0041 1.4E-07 63.9 13.1 165 105-275 30-236 (499)
230 3pxi_A Negative regulator of g 97.1 0.0014 4.7E-08 71.8 10.0 144 106-250 491-674 (758)
231 3t15_A Ribulose bisphosphate c 97.1 0.00064 2.2E-08 65.2 6.1 66 126-193 35-110 (293)
232 1ojl_A Transcriptional regulat 97.0 0.00079 2.7E-08 65.0 6.3 45 107-151 3-49 (304)
233 2c9o_A RUVB-like 1; hexameric 96.9 0.0014 4.7E-08 67.2 7.8 90 105-194 36-138 (456)
234 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0036 1.2E-07 68.5 10.4 46 106-151 458-512 (758)
235 2kjq_A DNAA-related protein; s 96.7 0.0023 7.7E-08 54.5 5.9 68 119-194 28-95 (149)
236 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0029 9.9E-08 60.6 6.7 65 128-194 124-194 (331)
237 1ex7_A Guanylate kinase; subst 96.5 0.0018 6.2E-08 57.3 3.9 24 128-151 2-25 (186)
238 3fwy_A Light-independent proto 96.4 0.0028 9.6E-08 61.2 5.2 29 125-153 46-74 (314)
239 1rz3_A Hypothetical protein rb 96.4 0.0032 1.1E-07 56.6 5.3 43 110-152 2-47 (201)
240 1qvr_A CLPB protein; coiled co 96.4 0.0064 2.2E-07 67.4 8.5 46 106-151 558-612 (854)
241 1ypw_A Transitional endoplasmi 96.4 0.0037 1.3E-07 68.5 6.4 146 104-252 202-386 (806)
242 3c8u_A Fructokinase; YP_612366 96.3 0.0043 1.5E-07 56.1 5.3 40 113-152 6-47 (208)
243 3rfe_A Platelet glycoprotein I 96.2 0.0061 2.1E-07 50.4 5.6 34 458-495 32-65 (130)
244 2qgz_A Helicase loader, putati 96.2 0.0039 1.3E-07 60.1 4.7 41 112-152 134-177 (308)
245 1um8_A ATP-dependent CLP prote 96.2 0.011 3.9E-07 58.6 8.2 25 127-151 72-96 (376)
246 1jr3_D DNA polymerase III, del 96.1 0.043 1.5E-06 53.6 11.9 154 125-281 16-184 (343)
247 4fs7_A Uncharacterized protein 96.0 0.023 7.9E-07 56.7 9.6 123 388-520 249-375 (394)
248 1u0j_A DNA replication protein 96.0 0.016 5.3E-07 54.1 7.6 35 116-150 91-127 (267)
249 1g8p_A Magnesium-chelatase 38 96.0 0.0043 1.5E-07 60.9 4.0 50 103-152 21-70 (350)
250 1qhx_A CPT, protein (chloramph 95.9 0.0047 1.6E-07 54.0 3.6 24 128-151 4-27 (178)
251 3kb2_A SPBC2 prophage-derived 95.9 0.0047 1.6E-07 53.6 3.5 25 128-152 2-26 (173)
252 3lw7_A Adenylate kinase relate 95.8 0.0045 1.5E-07 53.8 3.1 20 128-147 2-21 (179)
253 3cf2_A TER ATPase, transitiona 95.8 0.018 6.2E-07 62.4 8.1 147 103-252 474-662 (806)
254 3jvv_A Twitching mobility prot 95.7 0.011 3.8E-07 58.0 5.9 94 126-223 122-234 (356)
255 3vaa_A Shikimate kinase, SK; s 95.7 0.0067 2.3E-07 54.3 3.9 27 126-152 24-50 (199)
256 3end_A Light-independent proto 95.7 0.01 3.4E-07 57.2 5.2 30 124-153 38-67 (307)
257 1kgd_A CASK, peripheral plasma 95.6 0.0065 2.2E-07 53.5 3.4 24 128-151 6-29 (180)
258 1zp6_A Hypothetical protein AT 95.6 0.0073 2.5E-07 53.5 3.7 24 127-150 9-32 (191)
259 1ly1_A Polynucleotide kinase; 95.6 0.007 2.4E-07 52.9 3.5 22 128-149 3-24 (181)
260 1kag_A SKI, shikimate kinase I 95.6 0.0059 2E-07 53.1 3.0 25 128-152 5-29 (173)
261 3trf_A Shikimate kinase, SK; a 95.6 0.0074 2.5E-07 53.2 3.6 26 127-152 5-30 (185)
262 1sky_E F1-ATPase, F1-ATP synth 95.6 0.033 1.1E-06 56.3 8.6 26 128-153 152-177 (473)
263 2ga8_A Hypothetical 39.9 kDa p 95.5 0.014 4.8E-07 56.7 5.6 43 110-152 3-49 (359)
264 3uie_A Adenylyl-sulfate kinase 95.5 0.0088 3E-07 53.6 3.8 29 124-152 22-50 (200)
265 2r44_A Uncharacterized protein 95.5 0.0078 2.7E-07 58.6 3.7 45 106-152 27-71 (331)
266 4eun_A Thermoresistant glucoki 95.5 0.0091 3.1E-07 53.5 3.9 27 125-151 27-53 (200)
267 3ice_A Transcription terminati 95.4 0.024 8E-07 55.6 6.8 36 116-151 162-198 (422)
268 3t61_A Gluconokinase; PSI-biol 95.4 0.0075 2.6E-07 54.1 3.1 25 127-151 18-42 (202)
269 2hf9_A Probable hydrogenase ni 95.4 0.013 4.4E-07 53.4 4.8 39 114-152 25-63 (226)
270 1odf_A YGR205W, hypothetical 3 95.4 0.018 6.2E-07 54.8 5.7 28 125-152 29-56 (290)
271 1nks_A Adenylate kinase; therm 95.4 0.01 3.4E-07 52.5 3.7 25 128-152 2-26 (194)
272 3nbx_X ATPase RAVA; AAA+ ATPas 95.3 0.0092 3.2E-07 61.4 3.9 45 106-152 22-66 (500)
273 2rhm_A Putative kinase; P-loop 95.3 0.012 4.1E-07 52.1 4.0 25 127-151 5-29 (193)
274 2ze6_A Isopentenyl transferase 95.3 0.01 3.6E-07 55.3 3.7 25 128-152 2-26 (253)
275 1kht_A Adenylate kinase; phosp 95.3 0.011 3.6E-07 52.3 3.6 25 128-152 4-28 (192)
276 1knq_A Gluconate kinase; ALFA/ 95.3 0.011 3.8E-07 51.5 3.7 25 127-151 8-32 (175)
277 3tr0_A Guanylate kinase, GMP k 95.3 0.0099 3.4E-07 53.3 3.4 24 128-151 8-31 (205)
278 3iij_A Coilin-interacting nucl 95.3 0.01 3.4E-07 52.1 3.3 25 127-151 11-35 (180)
279 3hws_A ATP-dependent CLP prote 95.3 0.018 6.2E-07 56.8 5.6 46 107-152 16-76 (363)
280 3tau_A Guanylate kinase, GMP k 95.3 0.011 3.9E-07 53.2 3.8 27 126-152 7-33 (208)
281 1gvn_B Zeta; postsegregational 95.3 0.018 6.3E-07 54.7 5.4 26 126-151 32-57 (287)
282 2wsm_A Hydrogenase expression/ 95.2 0.013 4.6E-07 53.1 4.3 41 112-152 15-55 (221)
283 2qor_A Guanylate kinase; phosp 95.2 0.01 3.5E-07 53.3 3.3 25 127-151 12-36 (204)
284 1xjc_A MOBB protein homolog; s 95.2 0.014 4.6E-07 50.6 3.9 28 126-153 3-30 (169)
285 3a00_A Guanylate kinase, GMP k 95.2 0.0094 3.2E-07 52.7 2.9 25 128-152 2-26 (186)
286 3dm5_A SRP54, signal recogniti 95.2 0.031 1.1E-06 56.2 7.0 29 126-154 99-127 (443)
287 1via_A Shikimate kinase; struc 95.2 0.01 3.6E-07 51.7 3.2 25 128-152 5-29 (175)
288 3asz_A Uridine kinase; cytidin 95.2 0.012 4.1E-07 53.0 3.7 27 126-152 5-31 (211)
289 1zuh_A Shikimate kinase; alpha 95.2 0.012 4.1E-07 50.9 3.5 27 126-152 6-32 (168)
290 2bdt_A BH3686; alpha-beta prot 95.2 0.012 4E-07 52.1 3.5 22 128-149 3-24 (189)
291 1uf9_A TT1252 protein; P-loop, 95.2 0.013 4.5E-07 52.3 3.9 26 125-150 6-31 (203)
292 1ukz_A Uridylate kinase; trans 95.2 0.014 4.9E-07 52.2 4.1 27 125-151 13-39 (203)
293 2yvu_A Probable adenylyl-sulfa 95.1 0.015 5.2E-07 51.2 4.2 28 126-153 12-39 (186)
294 2j41_A Guanylate kinase; GMP, 95.1 0.013 4.5E-07 52.5 3.8 25 127-151 6-30 (207)
295 2jaq_A Deoxyguanosine kinase; 95.1 0.012 4.3E-07 52.5 3.6 24 129-152 2-25 (205)
296 3hr8_A Protein RECA; alpha and 95.1 0.044 1.5E-06 53.6 7.7 26 127-152 61-86 (356)
297 2c95_A Adenylate kinase 1; tra 95.1 0.014 4.7E-07 51.8 3.8 25 127-151 9-33 (196)
298 4h09_A Hypothetical leucine ri 95.1 0.055 1.9E-06 53.5 8.6 122 388-519 213-341 (379)
299 1ye8_A Protein THEP1, hypothet 95.1 0.013 4.4E-07 51.5 3.4 24 129-152 2-25 (178)
300 1tev_A UMP-CMP kinase; ploop, 95.1 0.014 4.8E-07 51.7 3.7 25 127-151 3-27 (196)
301 2iyv_A Shikimate kinase, SK; t 95.0 0.011 3.8E-07 52.0 3.0 25 128-152 3-27 (184)
302 1y63_A LMAJ004144AAA protein; 95.0 0.015 5E-07 51.3 3.7 25 126-150 9-33 (184)
303 1uj2_A Uridine-cytidine kinase 95.0 0.014 4.7E-07 54.4 3.7 29 124-152 19-47 (252)
304 3tqc_A Pantothenate kinase; bi 95.0 0.02 6.8E-07 55.2 4.9 44 109-152 70-117 (321)
305 2if2_A Dephospho-COA kinase; a 95.0 0.013 4.4E-07 52.5 3.4 22 128-149 2-23 (204)
306 4gp7_A Metallophosphoesterase; 95.0 0.01 3.6E-07 51.6 2.7 22 127-148 9-30 (171)
307 1cke_A CK, MSSA, protein (cyti 95.0 0.014 4.9E-07 53.2 3.6 24 128-151 6-29 (227)
308 1nrj_B SR-beta, signal recogni 95.0 0.041 1.4E-06 49.6 6.7 67 125-191 10-93 (218)
309 1lvg_A Guanylate kinase, GMP k 95.0 0.012 4.1E-07 52.6 3.0 24 128-151 5-28 (198)
310 3cm0_A Adenylate kinase; ATP-b 94.9 0.016 5.4E-07 51.0 3.7 24 128-151 5-28 (186)
311 3tlx_A Adenylate kinase 2; str 94.9 0.028 9.7E-07 52.0 5.6 27 125-151 27-53 (243)
312 4akg_A Glutathione S-transfera 94.9 0.058 2E-06 66.0 9.5 23 128-150 1268-1290(2695)
313 2afh_E Nitrogenase iron protei 94.9 0.024 8.1E-07 54.0 5.2 27 127-153 2-28 (289)
314 1cp2_A CP2, nitrogenase iron p 94.9 0.024 8.1E-07 53.3 5.1 26 128-153 2-27 (269)
315 2bwj_A Adenylate kinase 5; pho 94.9 0.015 5.1E-07 51.7 3.5 25 128-152 13-37 (199)
316 2qt1_A Nicotinamide riboside k 94.9 0.015 5.1E-07 52.3 3.5 24 127-150 21-44 (207)
317 1e6c_A Shikimate kinase; phosp 94.9 0.013 4.6E-07 50.7 3.1 25 128-152 3-27 (173)
318 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.017 5.8E-07 54.1 3.9 25 127-151 4-28 (260)
319 2bbw_A Adenylate kinase 4, AK4 94.9 0.017 5.9E-07 53.5 3.9 26 126-151 26-51 (246)
320 2plr_A DTMP kinase, probable t 94.9 0.018 6.3E-07 51.7 4.0 26 128-153 5-30 (213)
321 3ney_A 55 kDa erythrocyte memb 94.8 0.018 6.1E-07 51.3 3.7 26 126-151 18-43 (197)
322 1fzq_A ADP-ribosylation factor 94.8 0.058 2E-06 47.1 7.1 67 125-191 14-94 (181)
323 3umf_A Adenylate kinase; rossm 94.8 0.019 6.4E-07 52.0 3.9 28 125-152 27-54 (217)
324 1aky_A Adenylate kinase; ATP:A 94.8 0.018 6.2E-07 52.3 3.9 27 126-152 3-29 (220)
325 2vli_A Antibiotic resistance p 94.8 0.013 4.3E-07 51.5 2.7 26 127-152 5-30 (183)
326 3p32_A Probable GTPase RV1496/ 94.8 0.052 1.8E-06 53.3 7.4 38 115-152 65-104 (355)
327 4eaq_A DTMP kinase, thymidylat 94.8 0.045 1.5E-06 50.1 6.4 53 126-180 25-77 (229)
328 1qf9_A UMP/CMP kinase, protein 94.8 0.018 6.2E-07 50.8 3.6 25 127-151 6-30 (194)
329 2cdn_A Adenylate kinase; phosp 94.8 0.021 7.1E-07 51.0 4.1 26 127-152 20-45 (201)
330 1jjv_A Dephospho-COA kinase; P 94.8 0.015 5.3E-07 52.1 3.2 22 128-149 3-24 (206)
331 1yrb_A ATP(GTP)binding protein 94.8 0.03 1E-06 52.3 5.3 26 127-152 14-39 (262)
332 2pt5_A Shikimate kinase, SK; a 94.7 0.018 6.3E-07 49.6 3.5 24 129-152 2-25 (168)
333 1zu4_A FTSY; GTPase, signal re 94.7 0.03 1E-06 54.1 5.3 27 126-152 104-130 (320)
334 1znw_A Guanylate kinase, GMP k 94.7 0.018 6.1E-07 51.9 3.4 25 127-151 20-44 (207)
335 2zr9_A Protein RECA, recombina 94.7 0.057 2E-06 52.8 7.3 26 127-152 61-86 (349)
336 2px0_A Flagellar biosynthesis 94.7 0.039 1.3E-06 52.7 5.9 27 126-152 104-130 (296)
337 2pbr_A DTMP kinase, thymidylat 94.7 0.02 6.8E-07 50.7 3.6 24 129-152 2-25 (195)
338 3aez_A Pantothenate kinase; tr 94.7 0.02 6.8E-07 55.1 3.9 28 125-152 88-115 (312)
339 2p5t_B PEZT; postsegregational 94.6 0.027 9.2E-07 52.5 4.6 26 126-151 31-56 (253)
340 2jeo_A Uridine-cytidine kinase 94.6 0.022 7.4E-07 52.8 3.9 26 125-150 23-48 (245)
341 1vma_A Cell division protein F 94.6 0.035 1.2E-06 53.2 5.4 27 126-152 103-129 (306)
342 1r8s_A ADP-ribosylation factor 94.6 0.086 3E-06 44.7 7.4 61 130-190 3-77 (164)
343 1zd8_A GTP:AMP phosphotransfer 94.6 0.021 7.2E-07 52.2 3.6 25 127-151 7-31 (227)
344 1z6g_A Guanylate kinase; struc 94.6 0.017 5.9E-07 52.5 3.0 25 127-151 23-47 (218)
345 1u8z_A RAS-related protein RAL 94.5 0.043 1.5E-06 46.8 5.4 24 128-151 5-28 (168)
346 2j37_W Signal recognition part 94.5 0.066 2.3E-06 54.9 7.6 28 126-153 100-127 (504)
347 1nn5_A Similar to deoxythymidy 94.5 0.024 8.2E-07 51.1 3.9 27 127-153 9-35 (215)
348 3io3_A DEHA2D07832P; chaperone 94.5 0.038 1.3E-06 54.0 5.5 29 124-152 15-43 (348)
349 2wwf_A Thymidilate kinase, put 94.5 0.023 7.9E-07 51.1 3.8 26 127-152 10-35 (212)
350 2grj_A Dephospho-COA kinase; T 94.5 0.023 8E-07 50.4 3.7 26 125-150 10-35 (192)
351 1zak_A Adenylate kinase; ATP:A 94.5 0.022 7.5E-07 51.8 3.6 26 127-152 5-30 (222)
352 1gtv_A TMK, thymidylate kinase 94.5 0.013 4.5E-07 52.8 2.0 25 128-152 1-25 (214)
353 4e22_A Cytidylate kinase; P-lo 94.5 0.024 8.3E-07 52.8 3.9 26 126-151 26-51 (252)
354 1htw_A HI0065; nucleotide-bind 94.5 0.024 8.2E-07 48.6 3.5 27 125-151 31-57 (158)
355 4gzl_A RAS-related C3 botulinu 94.5 0.018 6.2E-07 51.6 2.9 37 115-151 18-54 (204)
356 3l0o_A Transcription terminati 94.4 0.14 4.7E-06 50.2 9.1 39 114-152 161-200 (427)
357 2zts_A Putative uncharacterize 94.4 0.055 1.9E-06 49.9 6.2 24 127-150 30-53 (251)
358 1rj9_A FTSY, signal recognitio 94.4 0.025 8.4E-07 54.3 3.8 28 126-153 101-128 (304)
359 3fb4_A Adenylate kinase; psych 94.4 0.024 8.3E-07 51.2 3.6 23 129-151 2-24 (216)
360 2v3c_C SRP54, signal recogniti 94.4 0.03 1E-06 56.5 4.5 26 127-152 99-124 (432)
361 2erx_A GTP-binding protein DI- 94.4 0.042 1.4E-06 47.0 5.0 23 128-150 4-26 (172)
362 1z0f_A RAB14, member RAS oncog 94.3 0.05 1.7E-06 47.0 5.5 25 127-151 15-39 (179)
363 1s96_A Guanylate kinase, GMP k 94.3 0.024 8.2E-07 51.5 3.4 26 127-152 16-41 (219)
364 3kl4_A SRP54, signal recogniti 94.3 0.054 1.9E-06 54.4 6.2 28 126-153 96-123 (433)
365 2z0h_A DTMP kinase, thymidylat 94.3 0.026 9E-07 50.0 3.5 24 129-152 2-25 (197)
366 1c1y_A RAS-related protein RAP 94.3 0.043 1.5E-06 46.8 4.8 22 129-150 5-26 (167)
367 3iqw_A Tail-anchored protein t 94.3 0.044 1.5E-06 53.2 5.3 30 124-153 13-42 (334)
368 2ce2_X GTPase HRAS; signaling 94.2 0.039 1.3E-06 46.8 4.5 22 129-150 5-26 (166)
369 1kao_A RAP2A; GTP-binding prot 94.2 0.052 1.8E-06 46.1 5.3 24 128-151 4-27 (167)
370 1u94_A RECA protein, recombina 94.2 0.085 2.9E-06 51.7 7.3 26 127-152 63-88 (356)
371 1ypw_A Transitional endoplasmi 94.2 0.013 4.4E-07 64.3 1.6 145 105-251 476-661 (806)
372 2v54_A DTMP kinase, thymidylat 94.2 0.028 9.6E-07 50.2 3.6 25 127-151 4-28 (204)
373 3dl0_A Adenylate kinase; phosp 94.2 0.027 9.3E-07 50.9 3.5 23 129-151 2-24 (216)
374 2bme_A RAB4A, RAS-related prot 94.2 0.045 1.5E-06 47.8 4.8 24 128-151 11-34 (186)
375 1zd9_A ADP-ribosylation factor 94.2 0.047 1.6E-06 48.0 5.0 24 128-151 23-46 (188)
376 2f1r_A Molybdopterin-guanine d 94.2 0.017 5.9E-07 50.2 2.0 26 128-153 3-28 (171)
377 2hup_A RAS-related protein RAB 94.2 0.075 2.6E-06 47.3 6.4 24 127-150 29-52 (201)
378 1ek0_A Protein (GTP-binding pr 94.2 0.042 1.4E-06 47.0 4.5 23 129-151 5-27 (170)
379 2pez_A Bifunctional 3'-phospho 94.1 0.029 1E-06 49.0 3.5 25 127-151 5-29 (179)
380 2p5s_A RAS and EF-hand domain 94.1 0.068 2.3E-06 47.4 6.0 26 125-150 26-51 (199)
381 3k1j_A LON protease, ATP-depen 94.1 0.035 1.2E-06 58.8 4.6 48 103-152 38-85 (604)
382 3dz8_A RAS-related protein RAB 94.1 0.047 1.6E-06 48.1 4.8 24 128-151 24-47 (191)
383 1vht_A Dephospho-COA kinase; s 94.1 0.034 1.1E-06 50.4 3.9 23 127-149 4-26 (218)
384 2f6r_A COA synthase, bifunctio 94.1 0.032 1.1E-06 52.9 3.8 25 125-149 73-97 (281)
385 1m7g_A Adenylylsulfate kinase; 94.0 0.037 1.3E-06 49.9 4.0 28 125-152 23-50 (211)
386 3nwj_A ATSK2; P loop, shikimat 94.0 0.026 9E-07 52.4 3.0 25 128-152 49-73 (250)
387 2a9k_A RAS-related protein RAL 93.9 0.062 2.1E-06 46.7 5.3 25 127-151 18-42 (187)
388 2y8e_A RAB-protein 6, GH09086P 93.9 0.044 1.5E-06 47.4 4.2 23 128-150 15-37 (179)
389 3d3q_A TRNA delta(2)-isopenten 93.9 0.033 1.1E-06 53.9 3.7 24 128-151 8-31 (340)
390 4edh_A DTMP kinase, thymidylat 93.9 0.13 4.5E-06 46.3 7.5 52 128-180 7-58 (213)
391 2i3b_A HCR-ntpase, human cance 93.9 0.031 1.1E-06 49.5 3.2 25 128-152 2-26 (189)
392 3e70_C DPA, signal recognition 93.9 0.062 2.1E-06 52.0 5.6 29 125-153 127-155 (328)
393 2ehv_A Hypothetical protein PH 93.9 0.03 1E-06 51.8 3.3 23 127-149 30-52 (251)
394 4a74_A DNA repair and recombin 93.9 0.031 1.1E-06 50.9 3.3 25 127-151 25-49 (231)
395 3kjh_A CO dehydrogenase/acetyl 93.9 0.041 1.4E-06 50.8 4.2 25 130-154 3-27 (254)
396 1tue_A Replication protein E1; 93.9 0.047 1.6E-06 48.6 4.2 38 115-152 45-83 (212)
397 2r2a_A Uncharacterized protein 93.9 0.077 2.6E-06 47.3 5.8 23 128-150 6-28 (199)
398 4hlc_A DTMP kinase, thymidylat 93.9 0.12 4.1E-06 46.3 7.1 51 128-180 3-53 (205)
399 1np6_A Molybdopterin-guanine d 93.9 0.039 1.3E-06 48.0 3.7 26 127-152 6-31 (174)
400 2gf0_A GTP-binding protein DI- 93.9 0.07 2.4E-06 47.1 5.6 24 127-150 8-31 (199)
401 1r2q_A RAS-related protein RAB 93.9 0.051 1.7E-06 46.4 4.5 23 128-150 7-29 (170)
402 1sq5_A Pantothenate kinase; P- 93.9 0.036 1.2E-06 53.3 3.9 27 125-151 78-104 (308)
403 2bov_A RAla, RAS-related prote 93.9 0.063 2.2E-06 47.7 5.3 25 127-151 14-38 (206)
404 2onk_A Molybdate/tungstate ABC 93.9 0.034 1.2E-06 51.3 3.5 26 125-151 23-48 (240)
405 1xp8_A RECA protein, recombina 93.8 0.12 3.9E-06 50.9 7.4 26 127-152 74-99 (366)
406 3lnc_A Guanylate kinase, GMP k 93.8 0.022 7.5E-07 52.2 2.1 24 127-150 27-51 (231)
407 3r20_A Cytidylate kinase; stru 93.8 0.038 1.3E-06 50.6 3.6 26 127-152 9-34 (233)
408 1zj6_A ADP-ribosylation factor 93.8 0.11 3.6E-06 45.5 6.5 35 115-150 5-39 (187)
409 3con_A GTPase NRAS; structural 93.8 0.039 1.3E-06 48.4 3.7 24 128-151 22-45 (190)
410 3io5_A Recombination and repai 93.8 0.11 3.7E-06 49.6 6.7 24 129-152 30-53 (333)
411 1ls1_A Signal recognition part 93.8 0.059 2E-06 51.4 5.1 28 126-153 97-124 (295)
412 3tkl_A RAS-related protein RAB 93.8 0.044 1.5E-06 48.3 4.0 25 127-151 16-40 (196)
413 3be4_A Adenylate kinase; malar 93.8 0.039 1.3E-06 50.0 3.6 25 128-152 6-30 (217)
414 4dzz_A Plasmid partitioning pr 93.8 0.055 1.9E-06 48.3 4.6 26 128-153 2-28 (206)
415 3sr0_A Adenylate kinase; phosp 93.8 0.04 1.4E-06 49.5 3.6 24 129-152 2-25 (206)
416 3ake_A Cytidylate kinase; CMP 93.7 0.037 1.2E-06 49.5 3.4 24 129-152 4-27 (208)
417 1z0j_A RAB-22, RAS-related pro 93.7 0.051 1.7E-06 46.5 4.2 24 128-151 7-30 (170)
418 3kkq_A RAS-related protein M-R 93.7 0.044 1.5E-06 47.7 3.9 24 127-150 18-41 (183)
419 3b85_A Phosphate starvation-in 93.7 0.031 1E-06 50.4 2.8 23 128-150 23-45 (208)
420 2efe_B Small GTP-binding prote 93.7 0.052 1.8E-06 47.1 4.3 23 128-150 13-35 (181)
421 4dsu_A GTPase KRAS, isoform 2B 93.7 0.045 1.6E-06 47.8 3.9 24 128-151 5-28 (189)
422 1e4v_A Adenylate kinase; trans 93.7 0.04 1.4E-06 49.7 3.6 23 129-151 2-24 (214)
423 1z2a_A RAS-related protein RAB 93.7 0.035 1.2E-06 47.4 3.1 23 128-150 6-28 (168)
424 3q72_A GTP-binding protein RAD 93.7 0.069 2.4E-06 45.5 5.0 21 129-149 4-24 (166)
425 1z06_A RAS-related protein RAB 93.7 0.07 2.4E-06 46.8 5.1 24 127-150 20-43 (189)
426 1ak2_A Adenylate kinase isoenz 93.7 0.046 1.6E-06 50.1 4.0 26 127-152 16-41 (233)
427 3b9q_A Chloroplast SRP recepto 93.6 0.045 1.6E-06 52.3 4.0 27 127-153 100-126 (302)
428 2xb4_A Adenylate kinase; ATP-b 93.6 0.042 1.4E-06 50.0 3.6 23 129-151 2-24 (223)
429 3tif_A Uncharacterized ABC tra 93.6 0.031 1.1E-06 51.4 2.7 24 127-150 31-54 (235)
430 3t1o_A Gliding protein MGLA; G 93.6 0.072 2.5E-06 46.8 5.1 23 128-150 15-37 (198)
431 3crm_A TRNA delta(2)-isopenten 93.6 0.042 1.4E-06 52.8 3.6 24 128-151 6-29 (323)
432 3bc1_A RAS-related protein RAB 93.6 0.092 3.2E-06 45.9 5.8 23 128-150 12-34 (195)
433 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.05 1.7E-06 47.0 3.9 23 128-150 8-30 (177)
434 1a7j_A Phosphoribulokinase; tr 93.6 0.026 8.9E-07 53.7 2.2 26 126-151 4-29 (290)
435 2pcj_A ABC transporter, lipopr 93.6 0.032 1.1E-06 50.9 2.7 24 127-150 30-53 (224)
436 1g41_A Heat shock protein HSLU 93.6 0.044 1.5E-06 55.1 3.9 48 106-153 15-76 (444)
437 4dkx_A RAS-related protein RAB 93.5 0.064 2.2E-06 48.6 4.6 22 129-150 15-36 (216)
438 2fh5_B SR-beta, signal recogni 93.5 0.12 4.3E-06 46.2 6.6 25 127-151 7-31 (214)
439 2r8r_A Sensor protein; KDPD, P 93.5 0.074 2.5E-06 48.1 4.8 26 129-154 8-33 (228)
440 2fg5_A RAB-22B, RAS-related pr 93.5 0.053 1.8E-06 47.8 3.9 24 128-151 24-47 (192)
441 2orw_A Thymidine kinase; TMTK, 93.5 0.073 2.5E-06 46.8 4.8 26 128-153 4-29 (184)
442 1zbd_A Rabphilin-3A; G protein 93.5 0.062 2.1E-06 47.8 4.4 24 128-151 9-32 (203)
443 2g6b_A RAS-related protein RAB 93.5 0.044 1.5E-06 47.5 3.3 24 128-151 11-34 (180)
444 3exa_A TRNA delta(2)-isopenten 93.4 0.044 1.5E-06 52.3 3.4 24 128-151 4-27 (322)
445 2il1_A RAB12; G-protein, GDP, 93.4 0.059 2E-06 47.5 4.1 23 128-150 27-49 (192)
446 3bfv_A CAPA1, CAPB2, membrane 93.3 0.14 4.7E-06 48.2 6.8 29 124-152 79-108 (271)
447 2ew1_A RAS-related protein RAB 93.3 0.059 2E-06 48.1 4.1 24 127-150 26-49 (201)
448 2cvh_A DNA repair and recombin 93.3 0.044 1.5E-06 49.4 3.2 23 127-149 20-42 (220)
449 3gfo_A Cobalt import ATP-bindi 93.3 0.037 1.3E-06 52.2 2.7 24 127-150 34-57 (275)
450 4tmk_A Protein (thymidylate ki 93.3 0.17 6E-06 45.5 7.1 51 128-179 4-55 (213)
451 2cbz_A Multidrug resistance-as 93.3 0.038 1.3E-06 50.9 2.7 24 127-150 31-54 (237)
452 2fn4_A P23, RAS-related protei 93.3 0.05 1.7E-06 47.1 3.4 24 127-150 9-32 (181)
453 3v9p_A DTMP kinase, thymidylat 93.2 0.11 3.9E-06 47.2 5.8 54 127-180 25-81 (227)
454 3fkq_A NTRC-like two-domain pr 93.2 0.078 2.7E-06 52.4 5.1 28 125-152 141-169 (373)
455 1pgv_A TMD-1, tropomodulin TMD 93.2 0.077 2.6E-06 47.0 4.5 39 391-429 40-85 (197)
456 3a8t_A Adenylate isopentenyltr 93.2 0.044 1.5E-06 52.9 3.1 25 127-151 40-64 (339)
457 3vr4_D V-type sodium ATPase su 93.2 0.11 3.9E-06 51.9 6.2 37 117-153 140-177 (465)
458 1b0u_A Histidine permease; ABC 93.2 0.039 1.3E-06 51.6 2.7 25 126-150 31-55 (262)
459 3foz_A TRNA delta(2)-isopenten 93.2 0.054 1.8E-06 51.5 3.6 25 127-151 10-34 (316)
460 2atv_A RERG, RAS-like estrogen 93.2 0.095 3.2E-06 46.3 5.2 26 125-150 26-51 (196)
461 2d2e_A SUFC protein; ABC-ATPas 93.2 0.047 1.6E-06 50.7 3.2 23 128-150 30-52 (250)
462 1g16_A RAS-related protein SEC 93.1 0.043 1.5E-06 46.9 2.7 23 128-150 4-26 (170)
463 1x3s_A RAS-related protein RAB 93.1 0.061 2.1E-06 47.2 3.8 24 128-151 16-39 (195)
464 4g1u_C Hemin import ATP-bindin 93.1 0.041 1.4E-06 51.6 2.7 25 127-151 37-61 (266)
465 3gqb_B V-type ATP synthase bet 93.1 0.11 3.6E-06 52.2 5.7 36 118-153 137-173 (464)
466 1ltq_A Polynucleotide kinase; 93.1 0.053 1.8E-06 51.8 3.5 23 128-150 3-25 (301)
467 1ji0_A ABC transporter; ATP bi 93.1 0.042 1.5E-06 50.7 2.7 24 127-150 32-55 (240)
468 1sgw_A Putative ABC transporte 93.1 0.038 1.3E-06 50.0 2.3 23 128-150 36-58 (214)
469 2zu0_C Probable ATP-dependent 93.1 0.05 1.7E-06 51.1 3.2 25 126-150 45-69 (267)
470 2og2_A Putative signal recogni 93.1 0.063 2.2E-06 52.6 4.0 27 127-153 157-183 (359)
471 2f7s_A C25KG, RAS-related prot 93.0 0.12 4.2E-06 46.4 5.7 23 128-150 26-48 (217)
472 2yhs_A FTSY, cell division pro 93.0 0.1 3.5E-06 53.1 5.6 28 126-153 292-319 (503)
473 1g6h_A High-affinity branched- 93.0 0.043 1.5E-06 51.2 2.7 25 127-151 33-57 (257)
474 3cio_A ETK, tyrosine-protein k 93.0 0.17 5.9E-06 48.2 7.0 29 124-152 101-130 (299)
475 2pze_A Cystic fibrosis transme 93.0 0.045 1.5E-06 50.1 2.7 25 127-151 34-58 (229)
476 2w0m_A SSO2452; RECA, SSPF, un 93.0 0.053 1.8E-06 49.3 3.3 25 128-152 24-48 (235)
477 2olj_A Amino acid ABC transpor 93.0 0.044 1.5E-06 51.3 2.7 25 126-150 49-73 (263)
478 2oil_A CATX-8, RAS-related pro 93.0 0.061 2.1E-06 47.4 3.5 25 127-151 25-49 (193)
479 3q85_A GTP-binding protein REM 93.0 0.08 2.7E-06 45.2 4.2 22 128-149 3-24 (169)
480 1mv5_A LMRA, multidrug resista 93.0 0.047 1.6E-06 50.5 2.8 26 126-151 27-52 (243)
481 3clv_A RAB5 protein, putative; 92.9 0.12 4E-06 45.6 5.4 24 127-150 7-30 (208)
482 2woj_A ATPase GET3; tail-ancho 92.9 0.1 3.6E-06 51.1 5.4 28 125-152 16-43 (354)
483 2ff7_A Alpha-hemolysin translo 92.9 0.046 1.6E-06 50.6 2.7 24 128-151 36-59 (247)
484 2v9p_A Replication protein E1; 92.9 0.056 1.9E-06 51.6 3.3 27 125-151 124-150 (305)
485 1oix_A RAS-related protein RAB 92.9 0.06 2E-06 47.5 3.4 25 127-151 29-53 (191)
486 1j8m_F SRP54, signal recogniti 92.9 0.11 3.7E-06 49.5 5.4 27 127-153 98-124 (297)
487 3ld9_A DTMP kinase, thymidylat 92.9 0.15 5.2E-06 46.2 6.1 56 125-180 19-75 (223)
488 1g8f_A Sulfate adenylyltransfe 92.9 0.1 3.4E-06 53.6 5.4 46 108-153 374-421 (511)
489 2eyu_A Twitching motility prot 92.8 0.062 2.1E-06 50.2 3.5 92 125-222 23-135 (261)
490 2qmh_A HPR kinase/phosphorylas 92.8 0.057 1.9E-06 47.8 3.0 24 127-150 34-57 (205)
491 1vpl_A ABC transporter, ATP-bi 92.8 0.048 1.6E-06 50.8 2.7 25 126-150 40-64 (256)
492 2b6h_A ADP-ribosylation factor 92.8 0.072 2.5E-06 47.0 3.8 27 123-149 25-51 (192)
493 3zq6_A Putative arsenical pump 92.8 0.098 3.3E-06 50.6 5.0 25 128-152 15-39 (324)
494 1wcv_1 SOJ, segregation protei 92.8 0.075 2.6E-06 49.5 4.0 29 125-153 4-33 (257)
495 3zvl_A Bifunctional polynucleo 92.8 0.056 1.9E-06 54.3 3.3 27 125-151 256-282 (416)
496 2ghi_A Transport protein; mult 92.8 0.05 1.7E-06 50.8 2.7 24 127-150 46-69 (260)
497 1n0w_A DNA repair protein RAD5 92.8 0.058 2E-06 49.5 3.2 24 127-150 24-47 (243)
498 1byi_A Dethiobiotin synthase; 92.7 0.11 3.8E-06 47.0 5.0 26 128-153 2-28 (224)
499 2xxa_A Signal recognition part 92.7 0.081 2.8E-06 53.3 4.4 29 126-154 99-127 (433)
500 2ixe_A Antigen peptide transpo 92.7 0.051 1.7E-06 51.1 2.7 26 126-151 44-69 (271)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-37 Score=329.16 Aligned_cols=258 Identities=14% Similarity=0.113 Sum_probs=197.2
Q ss_pred ccchHHHHHHHHHhcCC---CceEEEEEccCCCchHHHHHHHHH--HhhccCCCCEEEEeccCch---------------
Q 048213 109 ESRMSTFNDILNALKSP---DVNMLGIYGMGGIRKTTPAKEVAI--KAENEKLFDRVIFVEESES--------------- 168 (532)
Q Consensus 109 ~gR~~~~~~i~~~l~~~---~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~~~~~~~~--------------- 168 (532)
+||+.++++|.++|... +.++|+|+||||+||||||+++|+ +.+++.+|+..+|...+..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999733 689999999999999999999999 6788889999885543221
Q ss_pred -------------------hhHHHHHHHHhccCcEEEEEcCCCCcccccccccccCCCCCCeEEEEeecChHHhhhcCCC
Q 048213 169 -------------------GRARSLCNRLKKEKMILVILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDVLSRKMDS 229 (532)
Q Consensus 169 -------------------~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v~~~~~~~ 229 (532)
.....+++.|.++|||||||||||+.+++ .+ + ..+||+||||||++.++......
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHcCCC
Confidence 12456667777424999999999998765 21 1 12799999999999997532224
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHccCChHHHHHHHHHhcCCCCCCCC
Q 048213 230 QQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVARALRNKRLFDWKDALEQLRWPSSTNFK 309 (532)
Q Consensus 230 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~~~~~~~~~~~ 309 (532)
..+|.+++|+.++||+||.+.++.....+...+++++|+++|+|+||||+++|+.++.++ .+|...+....+..
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~----- 358 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR----- 358 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH-----
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc-----
Confidence 468999999999999999999986544467888999999999999999999999998764 34444343322110
Q ss_pred CchhHHHHHHHhhcCCCCCchHHHHHH-----------HHhhh-hcCChhHHHHHHHHh--cccCC---cccHHHHHhhH
Q 048213 310 DIQPTAYKAIELSYVKLDGDELKNIFL-----------LIGYT-AIASIDDLLMYGMGL--GLFQG---IKRMEVARARV 372 (532)
Q Consensus 310 ~~~~~~~~~l~~sy~~L~~~~~k~~f~-----------~lalF-~~i~~~~Li~~w~ae--g~~~~---~~~~~~~~~~~ 372 (532)
....+.+++.+||+.||++ +|.||+ |||+| .+.+.+ +++|+|+ ||+.. ..+.+++++ +
T Consensus 359 -~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~-~ 433 (549)
T 2a5y_B 359 -GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD-R 433 (549)
T ss_dssp -CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-H
T ss_pred -cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-H
Confidence 1235777899999999998 999999 99999 444444 8999999 99974 346778877 8
Q ss_pred HhhhhcccccC
Q 048213 373 VIDLTYMNLLS 383 (532)
Q Consensus 373 ~l~l~~~~l~~ 383 (532)
+-+|...++..
T Consensus 434 l~~L~~rsLl~ 444 (549)
T 2a5y_B 434 LKRLSKRGALL 444 (549)
T ss_dssp HHHTTTBSSCS
T ss_pred HHHHHHcCCee
Confidence 88888877743
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.2e-33 Score=322.31 Aligned_cols=245 Identities=20% Similarity=0.240 Sum_probs=191.4
Q ss_pred cccccccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhhc-cCCCC-EEEEeccCc----------
Q 048213 102 NKDYEAFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN-EKLFD-RVIFVEESE---------- 167 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~~~~~~~---------- 167 (532)
+.....|+||++++++|.++|. ++++++|+|+||||+||||||+++|++.+. ..+|. ..+|...+.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 4456779999999999999996 467899999999999999999999998654 34454 343332211
Q ss_pred ---------------------hhhHHHHHHHHhc-cCcEEEEEcCCCCcccccccccccCCCCCCeEEEEeecChHHhhh
Q 048213 168 ---------------------SGRARSLCNRLKK-EKMILVILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDVLSR 225 (532)
Q Consensus 168 ---------------------~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v~~~ 225 (532)
......++..+.. ++|+||||||||+..+|+.+ .+||+||||||++.++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 1122333333332 24999999999999887765 568999999999999754
Q ss_pred cCCCCceEEccC-CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHccCChHHHHHHHHHhcCCC
Q 048213 226 KMDSQQDFWVGV-LKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVARALRNKRLFDWKDALEQLRWPS 304 (532)
Q Consensus 226 ~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~~~~~~ 304 (532)
.......+.+.+ |++++|++||...++.. .+...+.+++|+++|+|+||||+++|++|+.++ ..|...++.+....
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 466678899996 99999999999998633 234456799999999999999999999999775 46888888775432
Q ss_pred C----CCCCCchhHHHHHHHhhcCCCCCchHHHHHHHHhhh---hcCChhHHHHHHHHhc
Q 048213 305 S----TNFKDIQPTAYKAIELSYVKLDGDELKNIFLLIGYT---AIASIDDLLMYGMGLG 357 (532)
Q Consensus 305 ~----~~~~~~~~~~~~~l~~sy~~L~~~~~k~~f~~lalF---~~i~~~~Li~~w~aeg 357 (532)
. .........+..++.+||+.||++ .|+||+|||+| +.|+.+.++.+|.+++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~ 408 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET 408 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH
Confidence 1 112223467999999999999999 99999999999 6899999999997653
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=7.9e-32 Score=290.80 Aligned_cols=219 Identities=21% Similarity=0.188 Sum_probs=172.5
Q ss_pred cccchHHHHHHHHHhcC-CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCE-EEEeccCch-----------------
Q 048213 108 FESRMSTFNDILNALKS-PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDR-VIFVEESES----------------- 168 (532)
Q Consensus 108 ~~gR~~~~~~i~~~l~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~~~~~~~~----------------- 168 (532)
.+||++++++|.++|.. ++.++|+|+||||+||||||+++|++.+++.+|+. .+|...+..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 39999999999999974 56899999999999999999999998877778986 443221110
Q ss_pred -------------------hhHHHHHHHHh--ccCcEEEEEcCCCCcccccccccccCCCCCCeEEEEeecChHHhhhcC
Q 048213 169 -------------------GRARSLCNRLK--KEKMILVILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDVLSRKM 227 (532)
Q Consensus 169 -------------------~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v~~~~~ 227 (532)
.....+.+.|. .++|+||||||||+.++|+.+. +||+||||||++.++.. +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh-c
Confidence 11223444441 2589999999999988887651 68999999999998742 2
Q ss_pred CCCceEEcc------CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHccC--ChHHHHHHHHH
Q 048213 228 DSQQDFWVG------VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVARALRNK--RLFDWKDALEQ 299 (532)
Q Consensus 228 ~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~--~~~~w~~~l~~ 299 (532)
.....+.++ +|+.+||++||.+..+.. ..+...+| |+|+||||+++|+.|+++ +.++|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 223356666 999999999999985432 12233343 999999999999999977 77888652
Q ss_pred hcCCCCCCCCCchhHHHHHHHhhcCCCCCchH-HHHHHHHhhh---hcCChhHHHHHHHHhc
Q 048213 300 LRWPSSTNFKDIQPTAYKAIELSYVKLDGDEL-KNIFLLIGYT---AIASIDDLLMYGMGLG 357 (532)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~~f~~lalF---~~i~~~~Li~~w~aeg 357 (532)
....+..++.+||+.||++ . |+||++||+| +.|+.+.++.+|.++|
T Consensus 351 -----------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 351 -----------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp -----------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred -----------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence 1467999999999999999 8 9999999999 5788899999999886
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=6e-29 Score=267.24 Aligned_cols=241 Identities=20% Similarity=0.249 Sum_probs=182.6
Q ss_pred ccccccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhhc-cCCCC-EEEEeccC------------
Q 048213 103 KDYEAFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN-EKLFD-RVIFVEES------------ 166 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~~~~~~------------ 166 (532)
.....|+||+.++++|.+++. .++.++|+|+||||+||||||.+++++..+ +.+|+ .++|...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~ 200 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQ 200 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHH
Confidence 345679999999999999997 456799999999999999999999987655 55684 34422111
Q ss_pred -------------------chhhHHHHHHHHhc-cCcEEEEEcCCCCcccccccccccCCCCCCeEEEEeecChHHhhhc
Q 048213 167 -------------------ESGRARSLCNRLKK-EKMILVILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDVLSRK 226 (532)
Q Consensus 167 -------------------~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v~~~~ 226 (532)
.......+.+.+.. .+++||||||+|+...++.+ .+|++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~- 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS- 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT-
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHh-
Confidence 01123334444442 27899999999987766543 468999999999988642
Q ss_pred CCCCceEEc---cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHccCChHHHHHHHHHhcCC
Q 048213 227 MDSQQDFWV---GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVARALRNKRLFDWKDALEQLRWP 303 (532)
Q Consensus 227 ~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~~~~~ 303 (532)
.. ...+.+ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||..+|+.++... ..|...++.+...
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK 348 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence 22 344554 5899999999999998742 223356789999999999999999999998763 3688888877643
Q ss_pred CC----CCCCCchhHHHHHHHhhcCCCCCchHHHHHHHHhhh---hcCChhHHHHHHHHh
Q 048213 304 SS----TNFKDIQPTAYKAIELSYVKLDGDELKNIFLLIGYT---AIASIDDLLMYGMGL 356 (532)
Q Consensus 304 ~~----~~~~~~~~~~~~~l~~sy~~L~~~~~k~~f~~lalF---~~i~~~~Li~~w~ae 356 (532)
.. .........+..++..||+.||++ .|.||.++|+| ..|+.+.+..+|.++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 21 111223468999999999999999 99999999999 468888999999654
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=4.2e-16 Score=154.32 Aligned_cols=153 Identities=27% Similarity=0.292 Sum_probs=92.7
Q ss_pred HHhhHHhhhhcccccCCchhhhccccccEEEeccccccC--ccccc---------ccccccEEeecccccccc-----cc
Q 048213 368 ARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLG---------ELKILEILRLRVNELTRA-----GS 431 (532)
Q Consensus 368 ~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~---------~l~~L~~L~l~~~~l~~~-----~l 431 (532)
+...+.+++.+|.+..+|..++.+++|++|++++|.... +..+. .+++|++|++++|.++.+ .+
T Consensus 126 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l 205 (328)
T 4fcg_A 126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205 (328)
T ss_dssp GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGC
T ss_pred cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCC
Confidence 334455555555555555556666666666665554333 22222 356666666666655544 45
Q ss_pred CCcceEEeccccccCCCCCcccccCCCCCEEecCCcccc-cccccccccccccCCCccEEEeccCCCCCccchhhhhhcC
Q 048213 432 SQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIE-RIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSF 510 (532)
Q Consensus 432 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L 510 (532)
++|++|++++|.+ ...+..++.+++|++|+|++|++. .+|..+ ..+++|++|+|++|+.++.+ |..+ +.+
T Consensus 206 ~~L~~L~L~~N~l--~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-----~~l~~L~~L~L~~n~~~~~~-p~~~-~~l 276 (328)
T 4fcg_A 206 QNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCTALRNYPPIF-----GGRAPLKRLILKDCSNLLTL-PLDI-HRL 276 (328)
T ss_dssp TTCCEEEEESSCC--CCCCGGGGGCTTCCEEECTTCTTCCBCCCCT-----TCCCCCCEEECTTCTTCCBC-CTTG-GGC
T ss_pred CCCCEEEccCCCC--CcCchhhccCCCCCEEECcCCcchhhhHHHh-----cCCCCCCEEECCCCCchhhc-chhh-hcC
Confidence 5666666666655 345555666666666666666333 334433 56777888888777777777 6665 678
Q ss_pred CCccEEEeecCCccccccc
Q 048213 511 VGLQCLEICECPVLKEIIV 529 (532)
Q Consensus 511 ~~L~~L~l~~c~~L~~i~~ 529 (532)
++|++|+|++|+.+..++.
T Consensus 277 ~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TTCCEEECTTCTTCCCCCG
T ss_pred CCCCEEeCCCCCchhhccH
Confidence 8888888888877776654
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.64 E-value=7.8e-16 Score=152.37 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=118.5
Q ss_pred HHhhHHhhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEeecccccccc---------------cc
Q 048213 368 ARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA---------------GS 431 (532)
Q Consensus 368 ~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~---------------~l 431 (532)
+...+++++.+|.+..+|..++.+++|++|++++|.+.. |..+.++++|++|++++|++... .+
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 445567777777777777777778888888888877776 55677788888888877644332 27
Q ss_pred CCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCC
Q 048213 432 SQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFV 511 (532)
Q Consensus 432 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~ 511 (532)
++|++|++++|.+ ...|..++++++|++|+|++|.++.+|+.+ ..+++|++|+|++|+..+.+ |..+ +.++
T Consensus 183 ~~L~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l-----~~l~~L~~L~Ls~n~~~~~~-p~~~-~~l~ 253 (328)
T 4fcg_A 183 VNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRNSPLSALGPAI-----HHLPKLEELDLRGCTALRNY-PPIF-GGRA 253 (328)
T ss_dssp TTCCEEEEEEECC--CCCCGGGGGCTTCCEEEEESSCCCCCCGGG-----GGCTTCCEEECTTCTTCCBC-CCCT-TCCC
T ss_pred CCCCEEECcCCCc--CcchHhhcCCCCCCEEEccCCCCCcCchhh-----ccCCCCCEEECcCCcchhhh-HHHh-cCCC
Confidence 7888888888876 467777888888888888888888887766 67889999999988877777 6666 7889
Q ss_pred CccEEEeecCCccccccc
Q 048213 512 GLQCLEICECPVLKEIIV 529 (532)
Q Consensus 512 ~L~~L~l~~c~~L~~i~~ 529 (532)
+|++|+|++|+.+..++.
T Consensus 254 ~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CCCEEECTTCTTCCBCCT
T ss_pred CCCEEECCCCCchhhcch
Confidence 999999999887776653
No 7
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=4.8e-15 Score=135.33 Aligned_cols=147 Identities=20% Similarity=0.178 Sum_probs=126.0
Q ss_pred cHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc------ccCCcceE
Q 048213 364 RMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA------GSSQLKHL 437 (532)
Q Consensus 364 ~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L 437 (532)
+..++...+.+++.++.+..+| .+..+++|++|++++|.+..++.+..+++|++|++++|.+... .+++|++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred ChhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3456666788999999999888 6999999999999999888888999999999999999998863 78899999
Q ss_pred EeccccccCCCCCcccccCCCCCEEecCCcc-cccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEE
Q 048213 438 SVRGLRASAPNPTESEVALPKLETVCLSSIN-IERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCL 516 (532)
Q Consensus 438 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L 516 (532)
++++|.+ ....+..+..+++|++|+|++|. ++.+| .+ ..+++|++|++++|. +..+ + .+ ..+++|++|
T Consensus 118 ~Ls~n~i-~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l-----~~l~~L~~L~l~~n~-i~~~-~-~l-~~l~~L~~L 186 (197)
T 4ezg_A 118 DISHSAH-DDSILTKINTLPKVNSIDLSYNGAITDIM-PL-----KTLPELKSLNIQFDG-VHDY-R-GI-EDFPKLNQL 186 (197)
T ss_dssp ECCSSBC-BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GG-----GGCSSCCEEECTTBC-CCCC-T-TG-GGCSSCCEE
T ss_pred EecCCcc-CcHhHHHHhhCCCCCEEEccCCCCccccH-hh-----cCCCCCCEEECCCCC-CcCh-H-Hh-ccCCCCCEE
Confidence 9999987 44467788999999999999997 88886 34 678999999999865 7777 4 44 789999999
Q ss_pred EeecCC
Q 048213 517 EICECP 522 (532)
Q Consensus 517 ~l~~c~ 522 (532)
++++++
T Consensus 187 ~l~~N~ 192 (197)
T 4ezg_A 187 YAFSQT 192 (197)
T ss_dssp EECBC-
T ss_pred EeeCcc
Confidence 999875
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=1.6e-14 Score=138.96 Aligned_cols=146 Identities=23% Similarity=0.196 Sum_probs=86.9
Q ss_pred HhhHHhhhhcccccCCchhhhccccccEEEeccccccCc--ccccccccccEEeecccccccc------ccCCcceEEec
Q 048213 369 RARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDT--SVLGELKILEILRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 369 ~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
...+.+++.+|.+..++ .++.+++|++|++++|.+... ..+.++++|++|++++|++..+ .+++|++|+++
T Consensus 63 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 33455566666555543 456666666666666666552 2356666666666666665554 34566666666
Q ss_pred cccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeec
Q 048213 441 GLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICE 520 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~ 520 (532)
+|.+ ....+..+..+++|++|++++|.++.+|...+ ..+++|++|+|++|. +..+++..+ +.+++|++|++++
T Consensus 142 ~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 142 HNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF----DKLTQLKDLRLYQNQ-LKSVPDGVF-DRLTSLQYIWLHD 214 (272)
T ss_dssp SSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCEEECCS
T ss_pred CCcc-CccCHHHhccCccCCEEECCCCCcCccCHHHh----cCCccCCEEECCCCc-CCccCHHHH-hCCcCCCEEEccC
Confidence 6655 22233345666677777777776666655431 356777777777643 566644434 6677777777776
Q ss_pred CC
Q 048213 521 CP 522 (532)
Q Consensus 521 c~ 522 (532)
|+
T Consensus 215 N~ 216 (272)
T 3rfs_A 215 NP 216 (272)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=1.3e-14 Score=135.81 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=119.8
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccccc
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRA 444 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~ 444 (532)
.++..++.+..+|..+. ++|++|++++|.+.. +..+..+++|++|++++|++..+ .+++|++|+|++|++
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 45667778888888664 899999999999988 45689999999999999998877 678999999999987
Q ss_pred cCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 445 SAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 445 ~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
....+..+..+++|++|+|++|.|+.+|..+ ..+++|++|+|++ +.+..+++..+ +.+++|++|++++++
T Consensus 101 -~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-----~~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 101 -TVLPSAVFDRLVHLKELFMCCNKLTELPRGI-----ERLTHLTHLALDQ-NQLKSIPHGAF-DRLSSLTHAYLFGNP 170 (229)
T ss_dssp -CCCCTTTTTTCTTCCEEECCSSCCCSCCTTG-----GGCTTCSEEECCS-SCCCCCCTTTT-TTCTTCCEEECTTSC
T ss_pred -CccChhHhCcchhhCeEeccCCcccccCccc-----ccCCCCCEEECCC-CcCCccCHHHH-hCCCCCCEEEeeCCC
Confidence 3444456789999999999999999999887 7889999999998 56888955455 899999999999886
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=1.6e-14 Score=137.17 Aligned_cols=146 Identities=25% Similarity=0.263 Sum_probs=120.6
Q ss_pred hHHhhhhcccccCCch-hhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 371 RVVIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
.+.+++.++.+..++. .+..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|+|++
T Consensus 37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC
Confidence 3568888998888755 58999999999999999888 34588999999999999998876 578999999999
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
|.+ ....+..+..+++|++|+|++|.++.+|...+ ..+++|++|+|+++ .+..+++..+ +.+++|++|+|+++
T Consensus 117 N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N 189 (251)
T 3m19_A 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF----DKLTNLQTLSLSTN-QLQSVPHGAF-DRLGKLQTITLFGN 189 (251)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSC
T ss_pred CcC-CCcChhHhccCCcccEEECcCCcCCccCHHHc----CcCcCCCEEECCCC-cCCccCHHHH-hCCCCCCEEEeeCC
Confidence 987 33344457889999999999999998887542 57899999999984 5788855555 78999999999988
Q ss_pred Cc
Q 048213 522 PV 523 (532)
Q Consensus 522 ~~ 523 (532)
+-
T Consensus 190 ~~ 191 (251)
T 3m19_A 190 QF 191 (251)
T ss_dssp CB
T ss_pred ce
Confidence 63
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=2.3e-14 Score=137.65 Aligned_cols=144 Identities=27% Similarity=0.273 Sum_probs=72.2
Q ss_pred HHhhhhcccccCCchh-hhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccc
Q 048213 372 VVIDLTYMNLLSLPSS-LGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGL 442 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~ 442 (532)
+.+++.++.+..+|.. +..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|++++|
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 4444445555444433 3445555555555555444 12344555555555555544443 3455555555555
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
.+ ....+..+..+++|++|+|++|.++.+|...+ .++++|++|+|++| .+..+++..+ +.+++|++|+|++++
T Consensus 144 ~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 144 EL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF----DKLTELKTLKLDNN-QLKRVPEGAF-DSLEKLKMLQLQENP 216 (270)
T ss_dssp CC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT----TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred cC-CccCHhHccCCcccceeEecCCcCcEeChhHh----ccCCCcCEEECCCC-cCCcCCHHHh-ccccCCCEEEecCCC
Confidence 44 22222234555556666665555555554431 24566666666653 3555533333 556666666666554
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=1.7e-14 Score=138.73 Aligned_cols=171 Identities=20% Similarity=0.143 Sum_probs=137.8
Q ss_pred HHHHHHHhcccCCcccHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeeccccccc
Q 048213 349 LLMYGMGLGLFQGIKRMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTR 428 (532)
Q Consensus 349 Li~~w~aeg~~~~~~~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~ 428 (532)
++.......-+.......++...+.+++.++.+..++ .++.+++|++|++++|.+..++.+.++++|++|++++|.++.
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc
Confidence 3333443333444456677777788889998887776 489999999999999999998899999999999999999887
Q ss_pred c------ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccc
Q 048213 429 A------GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLF 502 (532)
Q Consensus 429 ~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~ 502 (532)
+ .+++|++|++++|.+ ....+..++.+++|++|++++|.++.+|...+ ..+++|++|++++|. +..++
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~ 173 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF----DKLTNLTELDLSYNQ-LQSLP 173 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSC-CCCCC
T ss_pred cChhHhcCCcCCCEEECCCCcC-CccCHHHhccCCCCCEEECCCCccCccCHHHh----ccCccCCEEECCCCC-cCccC
Confidence 6 578999999999987 44445568999999999999999998887652 468999999999864 78885
Q ss_pred hhhhhhcCCCccEEEeecCCcccccc
Q 048213 503 TSSIISSFVGLQCLEICECPVLKEII 528 (532)
Q Consensus 503 p~~~~~~L~~L~~L~l~~c~~L~~i~ 528 (532)
+..+ +.+++|++|++++|. ++.++
T Consensus 174 ~~~~-~~l~~L~~L~L~~N~-l~~~~ 197 (272)
T 3rfs_A 174 EGVF-DKLTQLKDLRLYQNQ-LKSVP 197 (272)
T ss_dssp TTTT-TTCTTCCEEECCSSC-CSCCC
T ss_pred HHHh-cCCccCCEEECCCCc-CCccC
Confidence 5545 789999999999885 44443
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=4.4e-14 Score=131.32 Aligned_cols=141 Identities=18% Similarity=0.287 Sum_probs=117.8
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccccc
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRA 444 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~ 444 (532)
.+++.++.+..+|..+. ++++.|++++|.+.. +..+..+++|++|++++|.+..+ .+++|++|+|++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 45677788888988764 689999999999988 34789999999999999998877 678999999999987
Q ss_pred cCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 445 SAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 445 ~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
..-.+..|.++++|++|+|++|.|+.+++..+ ..+++|++|+|++ +.+..+++..+ +.+++|++|+|++++
T Consensus 93 -~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 93 -TELPKSLFEGLFSLQLLLLNANKINCLRVDAF----QDLHNLNLLSLYD-NKLQTIAKGTF-SPLRAIQTMHLAQNP 163 (220)
T ss_dssp -CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCS-SCCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred -CccCHhHccCCCCCCEEECCCCCCCEeCHHHc----CCCCCCCEEECCC-CcCCEECHHHH-hCCCCCCEEEeCCCC
Confidence 33334457899999999999999998866542 5789999999998 55888855555 789999999999886
No 14
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=1.1e-13 Score=134.44 Aligned_cols=149 Identities=24% Similarity=0.241 Sum_probs=72.9
Q ss_pred CcccHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcce
Q 048213 361 GIKRMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKH 436 (532)
Q Consensus 361 ~~~~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~ 436 (532)
+.....++...+.+++.++.+..+|. +..+++|++|++++|.+.+.+.+.++++|++|++++|.+..+ .+++|++
T Consensus 38 ~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 116 (291)
T 1h6t_A 38 DAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKS 116 (291)
T ss_dssp SEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCE
T ss_pred cccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCE
Confidence 33344455555555555555555543 555555555555555555533355555555555555554444 3444555
Q ss_pred EEeccccccC--------------------CCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCC
Q 048213 437 LSVRGLRASA--------------------PNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 437 L~l~~~~~~~--------------------~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
|++++|++.. ... ..+..+++|++|++++|.++.+++ + ..+++|+.|+|++|
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l-----~~l~~L~~L~L~~N- 188 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-L-----AGLTKLQNLYLSKN- 188 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-G-----TTCTTCCEEECCSS-
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-h-----cCCCccCEEECCCC-
Confidence 5555543300 111 334444555555555554444433 2 34455555555543
Q ss_pred CCCccchhhhhhcCCCccEEEeecC
Q 048213 497 NLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 497 ~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
.++.+ +. + ..+++|++|++++|
T Consensus 189 ~i~~l-~~-l-~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 189 HISDL-RA-L-AGLKNLDVLELFSQ 210 (291)
T ss_dssp CCCBC-GG-G-TTCTTCSEEEEEEE
T ss_pred cCCCC-hh-h-ccCCCCCEEECcCC
Confidence 34444 22 2 45555555555554
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=6.6e-14 Score=132.92 Aligned_cols=147 Identities=20% Similarity=0.222 Sum_probs=123.2
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecccc
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLR 443 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~ 443 (532)
..+++.++.+..+|..+. ++++.|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|++++|.
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 356788888999998765 689999999999988 44689999999999999998876 67899999999998
Q ss_pred ccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCc
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPV 523 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~ 523 (532)
+ ....+..+..+++|++|+|++|.++.+|...+ ..+++|++|+|+++ .+..+++..+ +.+++|++|+|+++.
T Consensus 95 l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~- 166 (251)
T 3m19_A 95 L-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF----DRLTKLKELRLNTN-QLQSIPAGAF-DKLTNLQTLSLSTNQ- 166 (251)
T ss_dssp C-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-
T ss_pred c-cccChhHhcccCCCCEEEcCCCcCCCcChhHh----ccCCcccEEECcCC-cCCccCHHHc-CcCcCCCEEECCCCc-
Confidence 7 44455678899999999999999999888752 46899999999985 6888955455 899999999999874
Q ss_pred ccccc
Q 048213 524 LKEII 528 (532)
Q Consensus 524 L~~i~ 528 (532)
|+.++
T Consensus 167 l~~~~ 171 (251)
T 3m19_A 167 LQSVP 171 (251)
T ss_dssp CSCCC
T ss_pred CCccC
Confidence 44443
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=7.6e-14 Score=134.05 Aligned_cols=150 Identities=27% Similarity=0.282 Sum_probs=125.9
Q ss_pred hHHhhhhcccccCCch-hhhccccccEEEeccccccCc--ccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 371 RVVIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQDT--SVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
.+.+++.++.+..+|. .|..+++|++|++++|.+... ..+.++++|++|++++|.+..+ .+++|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 3578899999988876 599999999999999999883 3468899999999999998876 578999999999
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
|.+ ....+..+..+++|++|+|++|.++.+|...+ ..+++|++|+|++| .+..+++..+ +.+++|++|+|++|
T Consensus 119 n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 119 NQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF----DKLTSLKELRLYNN-QLKRVPEGAF-DKLTELKTLKLDNN 191 (270)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSS
T ss_pred Ccc-CeeCHHHhCcCcCCCEEECCCCcCCccCHhHc----cCCcccceeEecCC-cCcEeChhHh-ccCCCcCEEECCCC
Confidence 987 44455678999999999999999999887752 46899999999985 5888855555 78999999999988
Q ss_pred Ccccccc
Q 048213 522 PVLKEII 528 (532)
Q Consensus 522 ~~L~~i~ 528 (532)
.++.+.
T Consensus 192 -~l~~~~ 197 (270)
T 2o6q_A 192 -QLKRVP 197 (270)
T ss_dssp -CCSCCC
T ss_pred -cCCcCC
Confidence 455543
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=5.5e-14 Score=136.45 Aligned_cols=143 Identities=24% Similarity=0.231 Sum_probs=93.1
Q ss_pred HHhhhhcccccCC-chhhhccccccEEEeccccccCcccccccccccEEeecccccccc-----ccCCcceEEecccccc
Q 048213 372 VVIDLTYMNLLSL-PSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLRAS 445 (532)
Q Consensus 372 ~~l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~~~ 445 (532)
+.+++.+|.+..+ |..+..+++|++|++++|.+..++....+++|++|++++|.+..+ .+++|++|++++|++
T Consensus 34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l- 112 (290)
T 1p9a_G 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL- 112 (290)
T ss_dssp CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC-
T ss_pred CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcC-
Confidence 4567777777665 345777777777777777776644446677777777777776655 456777777777765
Q ss_pred CCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 446 APNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 446 ~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
....+..|.++++|++|+|++|.++.+|...+ ..+++|+.|+|++ +.++.+++..+ ..+++|++|+|+++
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~l~~~~~-~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLL----TPTPKLEKLSLAN-NNLTELPAGLL-NGLENLDTLLLQEN 182 (290)
T ss_dssp CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECTT-SCCSCCCTTTT-TTCTTCCEEECCSS
T ss_pred cccCHHHHcCCCCCCEEECCCCCCCccChhhc----ccccCCCEEECCC-CcCCccCHHHh-cCcCCCCEEECCCC
Confidence 33334556677777777777777776666542 2466777777765 34666633333 56677777777665
No 18
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=1.3e-13 Score=131.81 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=131.7
Q ss_pred HHHHHHHHhcccCCcccHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccc
Q 048213 348 DLLMYGMGLGLFQGIKRMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELT 427 (532)
Q Consensus 348 ~Li~~w~aeg~~~~~~~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~ 427 (532)
.++.......-+.+...+.++...+.+++.++.+..+| .++.+++|++|++++|.+.+.+.+.++++|++|++++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCS
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccC
Confidence 34444444444555556778888889999999999888 68999999999999999999555999999999999999988
Q ss_pred cc---ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchh
Q 048213 428 RA---GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTS 504 (532)
Q Consensus 428 ~~---~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~ 504 (532)
.+ ..++|++|++++|+. ... ..+..+++|++|+|++|.++.+| .+ ..+++|++|+|++|. +..+ .
T Consensus 99 ~l~~~~~~~L~~L~L~~N~l--~~~-~~l~~l~~L~~L~Ls~N~i~~~~-~l-----~~l~~L~~L~L~~N~-i~~~--~ 166 (263)
T 1xeu_A 99 NLNGIPSACLSRLFLDNNEL--RDT-DSLIHLKNLEILSIRNNKLKSIV-ML-----GFLSKLEVLDLHGNE-ITNT--G 166 (263)
T ss_dssp CCTTCCCSSCCEEECCSSCC--SBS-GGGTTCTTCCEEECTTSCCCBCG-GG-----GGCTTCCEEECTTSC-CCBC--T
T ss_pred CcCccccCcccEEEccCCcc--CCC-hhhcCcccccEEECCCCcCCCCh-HH-----ccCCCCCEEECCCCc-Ccch--H
Confidence 76 338899999999976 333 46889999999999999999886 33 578999999999854 7766 3
Q ss_pred hhhhcCCCccEEEeecCC
Q 048213 505 SIISSFVGLQCLEICECP 522 (532)
Q Consensus 505 ~~~~~L~~L~~L~l~~c~ 522 (532)
.+ +.+++|++|++++++
T Consensus 167 ~l-~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 167 GL-TRLKKVNWIDLTGQK 183 (263)
T ss_dssp TS-TTCCCCCEEEEEEEE
T ss_pred Hh-ccCCCCCEEeCCCCc
Confidence 33 789999999999875
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=1.9e-13 Score=133.93 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=66.4
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEeccccccCC
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRASAP 447 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~ 447 (532)
+.+++.+|.+..++. +..+++|++|++++|.+..++.+..+++|++|++++|.+..+ .+++|++|++++|.. .
T Consensus 66 ~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l--~ 142 (308)
T 1h6u_A 66 IGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI--T 142 (308)
T ss_dssp CEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCC--C
T ss_pred CEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCcc--C
Confidence 334444444444433 444444444444444444444444444444444444444433 344555555555543 1
Q ss_pred CCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 448 NPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 448 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
..+ .+..+++|++|++++|.++.++. + ..+++|+.|++++| .+..+++ + ..+++|++|++++|
T Consensus 143 ~~~-~l~~l~~L~~L~l~~n~l~~~~~-l-----~~l~~L~~L~l~~n-~l~~~~~--l-~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 143 NIS-PLAGLTNLQYLSIGNAQVSDLTP-L-----ANLSKLTTLKADDN-KISDISP--L-ASLPNLIEVHLKNN 205 (308)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCCCGG-G-----TTCTTCCEEECCSS-CCCCCGG--G-GGCTTCCEEECTTS
T ss_pred cCc-cccCCCCccEEEccCCcCCCChh-h-----cCCCCCCEEECCCC-ccCcChh--h-cCCCCCCEEEccCC
Confidence 221 14555555555555555555443 2 45566666666653 3555522 2 56666666666665
No 20
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=9.3e-14 Score=129.09 Aligned_cols=141 Identities=18% Similarity=0.263 Sum_probs=118.3
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccCc---ccccccccccEEeecccccccc------ccCCcceEEecccc
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDT---SVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLR 443 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~---~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~ 443 (532)
.+++.++.+..+|..+. ..+++|++++|.+... ..+.++++|++|++++|.++.+ .+++|++|+|++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 56788888988988664 4578999999998873 3488999999999999998877 67899999999998
Q ss_pred ccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
+ ....+..|.++++|++|+|++|.|+.+++..+ ..+++|++|+|++ +.+..++|..+ +.+++|++|+|++++
T Consensus 93 l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 93 L-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSF----IGLSSVRLLSLYD-NQITTVAPGAF-DTLHSLSTLNLLANP 164 (220)
T ss_dssp C-CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS----TTCTTCSEEECTT-SCCCCBCTTTT-TTCTTCCEEECCSCC
T ss_pred c-CccCHhHhcCCcCCCEEECCCCcCCeECHhHc----CCCccCCEEECCC-CcCCEECHHHh-cCCCCCCEEEecCcC
Confidence 7 44455668999999999999999998855432 5789999999998 55888867666 899999999999886
No 21
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=7.5e-14 Score=135.60 Aligned_cols=124 Identities=26% Similarity=0.217 Sum_probs=98.0
Q ss_pred HHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEeccc
Q 048213 367 VARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGL 442 (532)
Q Consensus 367 ~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~ 442 (532)
.+...+.+++.+|.+..+|. +..+++|++|++++|.+..++.+..+++|++|++++|.+..+ .+++|++|++++|
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp TCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred cCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCC
Confidence 33444667777777766654 777888888888888887777788888888888888877766 6789999999999
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCcc
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCL 501 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l 501 (532)
.+ ...+. +..+++|++|+|++|.++.+|. + ..+++|+.|++++++ +...
T Consensus 167 ~l--~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l-----~~l~~L~~L~l~~n~-i~~~ 215 (291)
T 1h6t_A 167 QI--SDIVP-LAGLTKLQNLYLSKNHISDLRA-L-----AGLKNLDVLELFSQE-CLNK 215 (291)
T ss_dssp CC--CCCGG-GTTCTTCCEEECCSSCCCBCGG-G-----TTCTTCSEEEEEEEE-EECC
T ss_pred cc--ccchh-hcCCCccCEEECCCCcCCCChh-h-----ccCCCCCEEECcCCc-ccCC
Confidence 76 34433 8999999999999999998864 4 678999999999864 5544
No 22
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=2.3e-13 Score=145.11 Aligned_cols=119 Identities=24% Similarity=0.210 Sum_probs=59.6
Q ss_pred HHHHHHhcccCCcccHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc
Q 048213 350 LMYGMGLGLFQGIKRMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA 429 (532)
Q Consensus 350 i~~w~aeg~~~~~~~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~ 429 (532)
+.......-+.+.....++...+.+++.++.+..+| .++.+++|+.|++++|.+..++.+..+++|+.|+|++|.+..+
T Consensus 24 ~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp HHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred HHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC
Confidence 333333333333344455555555566666555554 3555666666666666555533355555555555555555444
Q ss_pred ----ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccc
Q 048213 430 ----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERI 472 (532)
Q Consensus 430 ----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l 472 (532)
.+++|++|+|++|.+ .. +..+..+++|+.|+|++|.++.+
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l--~~-l~~l~~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGI--SD-INGLVHLPQLESLYLGNNKITDI 146 (605)
T ss_dssp TTSTTCTTCCEEECTTSCC--CC-CGGGGGCTTCSEEECCSSCCCCC
T ss_pred hhhccCCCCCEEEecCCCC--CC-CccccCCCccCEEECCCCccCCc
Confidence 344555555555543 11 22344444555555555444443
No 23
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.47 E-value=1.9e-13 Score=133.95 Aligned_cols=141 Identities=21% Similarity=0.242 Sum_probs=100.3
Q ss_pred HHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEecccc
Q 048213 368 ARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLR 443 (532)
Q Consensus 368 ~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~ 443 (532)
+...+.+++.+|.+..+| .+..+++|++|++++|.+...+.+..+++|++|++++|.+..+ .+++|++|++++|.
T Consensus 84 l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 84 LTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp CCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCc
Confidence 334466777777777765 4777788888888888777766677788888888888777665 56778888888776
Q ss_pred ccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
. ...+. +..+++|++|++++|.++.++. + ..+++|++|+|++|. +..+++ + ..+++|++|++++|+
T Consensus 163 l--~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-----~~l~~L~~L~L~~N~-l~~~~~--l-~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 163 V--SDLTP-LANLSKLTTLKADDNKISDISP-L-----ASLPNLIEVHLKNNQ-ISDVSP--L-ANTSNLFIVTLTNQT 228 (308)
T ss_dssp C--CCCGG-GTTCTTCCEEECCSSCCCCCGG-G-----GGCTTCCEEECTTSC-CCBCGG--G-TTCTTCCEEEEEEEE
T ss_pred C--CCChh-hcCCCCCCEEECCCCccCcChh-h-----cCCCCCCEEEccCCc-cCcccc--c-cCCCCCCEEEccCCe
Confidence 5 33333 7777788888888887777665 2 466788888887743 666632 3 677888888887765
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.46 E-value=1.8e-13 Score=132.55 Aligned_cols=145 Identities=28% Similarity=0.376 Sum_probs=81.2
Q ss_pred hHHhhhhccc-ccCC-chhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEec
Q 048213 371 RVVIDLTYMN-LLSL-PSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 371 ~~~l~l~~~~-l~~l-p~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
.+.+++.+|. +..+ |..+..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|+++
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 3455555554 4444 3445556666666666665555 23455566666666666655544 34566666666
Q ss_pred cccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeec
Q 048213 441 GLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICE 520 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~ 520 (532)
+|.+ ....+..+..+++|++|+|++|.++.+++..+ ..+++|+.|+|++| .+..+++..+ +.+++|++|++++
T Consensus 162 ~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 162 GNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF----RDLGRLMTLYLFAN-NLSALPTEAL-APLRALQYLRLND 234 (285)
T ss_dssp SSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSS-CCSCCCHHHH-TTCTTCCEEECCS
T ss_pred CCcc-cccCHHHhcCccccCEEECCCCcccccCHhHc----cCcccccEeeCCCC-cCCcCCHHHc-ccCcccCEEeccC
Confidence 6654 22222345556666666666666655522221 45667777777764 3566634444 6677777777776
Q ss_pred CC
Q 048213 521 CP 522 (532)
Q Consensus 521 c~ 522 (532)
++
T Consensus 235 N~ 236 (285)
T 1ozn_A 235 NP 236 (285)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=1.7e-13 Score=132.99 Aligned_cols=147 Identities=24% Similarity=0.260 Sum_probs=124.5
Q ss_pred HHhhHHhhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEeecccccccc------ccCCcceEEec
Q 048213 368 ARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 368 ~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
+...+.+++.+|.+..+|.. +.+++|++|++++|.+.. +..+..+++|++|++++|+++.+ .+++|++|+|+
T Consensus 54 l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp CTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred CCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence 34456789999999888765 889999999999999988 56688999999999999998877 67899999999
Q ss_pred cccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeec
Q 048213 441 GLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICE 520 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~ 520 (532)
+|++ ....+..+..+++|++|+|++|.++.+|..++ ..+++|++|+|++ +.+..+ |..+ ..+++|++|+|++
T Consensus 133 ~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~----~~l~~L~~L~L~~-N~l~~i-p~~~-~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 133 GNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLL----NGLENLDTLLLQE-NSLYTI-PKGF-FGSHLLPFAFLHG 204 (290)
T ss_dssp TSCC-CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT----TTCTTCCEEECCS-SCCCCC-CTTT-TTTCCCSEEECCS
T ss_pred CCCC-CccChhhcccccCCCEEECCCCcCCccCHHHh----cCcCCCCEEECCC-CcCCcc-Chhh-cccccCCeEEeCC
Confidence 9987 44445567899999999999999999988762 3689999999998 558899 6666 5788999999998
Q ss_pred CCc
Q 048213 521 CPV 523 (532)
Q Consensus 521 c~~ 523 (532)
+|-
T Consensus 205 Np~ 207 (290)
T 1p9a_G 205 NPW 207 (290)
T ss_dssp CCB
T ss_pred CCc
Confidence 763
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.46 E-value=2e-13 Score=132.18 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=125.8
Q ss_pred HhhHHhhhhcccccCC-chhhhccccccEEEecccc-ccC--cccccccccccEEeecccccccc------ccCCcceEE
Q 048213 369 RARVVIDLTYMNLLSL-PSSLGLLTNLQTLCLYYCK-LQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLS 438 (532)
Q Consensus 369 ~~~~~l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~-l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~ 438 (532)
...+.+++.++.+..+ |..+..+++|++|++++|. +.. +..+..+++|++|++++|.+..+ .+++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 4456789999999887 6679999999999999997 776 46789999999999999988876 578999999
Q ss_pred eccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEe
Q 048213 439 VRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEI 518 (532)
Q Consensus 439 l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l 518 (532)
+++|.+ ....+..+..+++|++|+|++|.++.+|...+ ..+++|++|+|++|. +..+.|..+ +.+++|++|++
T Consensus 136 l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l 208 (285)
T 1ozn_A 136 LQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAF----RGLHSLDRLLLHQNR-VAHVHPHAF-RDLGRLMTLYL 208 (285)
T ss_dssp CCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEEC
T ss_pred CCCCcc-cccCHhHhccCCCccEEECCCCcccccCHHHh----cCccccCEEECCCCc-ccccCHhHc-cCcccccEeeC
Confidence 999987 34444568899999999999999998887642 568999999999865 677757776 79999999999
Q ss_pred ecCCccccc
Q 048213 519 CECPVLKEI 527 (532)
Q Consensus 519 ~~c~~L~~i 527 (532)
++|. ++.+
T Consensus 209 ~~n~-l~~~ 216 (285)
T 1ozn_A 209 FANN-LSAL 216 (285)
T ss_dssp CSSC-CSCC
T ss_pred CCCc-CCcC
Confidence 9874 4443
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=2.1e-13 Score=120.88 Aligned_cols=133 Identities=26% Similarity=0.228 Sum_probs=107.5
Q ss_pred ccccccEEEecccccc--C-cccccccccccEEeecccccccc----ccCCcceEEeccccccCCCCCcccccCCCCCEE
Q 048213 390 LLTNLQTLCLYYCKLQ--D-TSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRASAPNPTESEVALPKLETV 462 (532)
Q Consensus 390 ~l~~L~~L~l~~~~l~--~-~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L 462 (532)
..++|+.|++++|.+. . +..+..+++|++|++++|.+..+ .+++|++|++++|.+ ....+..+.++++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRI-FGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCC-CSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcC-chHHHHHHhhCCCCCEE
Confidence 3478999999999988 4 55678999999999999988766 778999999999987 33366677789999999
Q ss_pred ecCCccccccc--ccccccccccCCCccEEEeccCCCCCccch---hhhhhcCCCccEEEeecCCccccccccC
Q 048213 463 CLSSINIERIW--QNQVAAMSCGIQNLKRLILFNCWNLTCLFT---SSIISSFVGLQCLEICECPVLKEIIVID 531 (532)
Q Consensus 463 ~L~~~~l~~lp--~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p---~~~~~~L~~L~~L~l~~c~~L~~i~~~~ 531 (532)
+|++|.++.+| ..+ ..+++|++|++++|+ +..+++ ..+ +.+++|++|++++|+ ++++...|
T Consensus 101 ~Ls~N~l~~~~~~~~l-----~~l~~L~~L~l~~N~-l~~~~~~~~~~~-~~l~~L~~L~l~~n~-~~~~~~~~ 166 (168)
T 2ell_A 101 NLSGNKLKDISTLEPL-----KKLECLKSLDLFNCE-VTNLNDYRESVF-KLLPQLTYLDGYDRE-DQEAPDSD 166 (168)
T ss_dssp ECBSSSCCSSGGGGGG-----SSCSCCCEEECCSSG-GGTSTTHHHHHH-TTCSSCCEETTEETT-SCBCCSSS
T ss_pred eccCCccCcchhHHHH-----hcCCCCCEEEeeCCc-CcchHHHHHHHH-HhCccCcEecCCCCC-hhhccccc
Confidence 99999999886 344 678999999999865 777734 244 899999999999986 55555443
No 28
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=4.2e-13 Score=123.43 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=111.9
Q ss_pred hhhhcccccCCchhhhccccccEEEeccccccCc--ccccccccccEEeecccccccc------ccCCcceEEecccccc
Q 048213 374 IDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDT--SVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRAS 445 (532)
Q Consensus 374 l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~ 445 (532)
++..++.+..+|..+ .++|++|++++|.+... ..+.++++|++|++++|++..+ .+++|++|++++|.+
T Consensus 12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l- 88 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL- 88 (208)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred EEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-
Confidence 345556677777654 46899999999998883 3478999999999999988876 568999999999987
Q ss_pred CCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 446 APNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 446 ~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
....+..+..+++|++|+|++|.++.+|...+ ..+++|++|+|+++ .+..+++..+ +.+++|++|++++++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVF----DKLTQLKDLRLYQN-QLKSVPDGVF-DRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSCC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHh----ccCCcCCEEECCCC-ccceeCHHHh-ccCCCccEEEecCCC
Confidence 33344457899999999999999998887642 46899999999985 5788844444 789999999999865
No 29
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=3.3e-13 Score=123.10 Aligned_cols=126 Identities=15% Similarity=0.123 Sum_probs=109.3
Q ss_pred hhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEeccccccCCCCCcccccCCCCCEEe
Q 048213 388 LGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVC 463 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 463 (532)
...+++|++|++++|.+.+.+.+..+++|++|++++|.+..+ .+++|++|++++|.+ ....+..++.+++|++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV-TSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTC-BGGGSCCCTTCTTCCEEE
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCcc-CcccChhhcCCCCCCEEE
Confidence 478899999999999999866899999999999999987766 789999999999987 444677889999999999
Q ss_pred cCCccccc-ccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 464 LSSINIER-IWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 464 L~~~~l~~-lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
+++|.++. .|..+ ..+++|++|+|++|..++.+ | .+ +.+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l-----~~l~~L~~L~L~~n~~i~~~-~-~l-~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 119 ISHSAHDDSILTKI-----NTLPKVNSIDLSYNGAITDI-M-PL-KTLPELKSLNIQFDG 170 (197)
T ss_dssp CCSSBCBGGGHHHH-----TTCSSCCEEECCSCTBCCCC-G-GG-GGCSSCCEEECTTBC
T ss_pred ecCCccCcHhHHHH-----hhCCCCCEEEccCCCCcccc-H-hh-cCCCCCCEEECCCCC
Confidence 99999886 44444 67899999999998768888 5 34 799999999999885
No 30
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=2.2e-13 Score=145.30 Aligned_cols=145 Identities=25% Similarity=0.267 Sum_probs=126.0
Q ss_pred HHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEec
Q 048213 365 MEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSVR 440 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~ 440 (532)
+..+...+.|++.+|.+..+|+ +..+++|++|++++|.+..++.+..+++|++|+|++|.+..+ .+++|+.|+|+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 139 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECC
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECC
Confidence 3444556789999999999887 999999999999999999988999999999999999998877 78999999999
Q ss_pred cccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeec
Q 048213 441 GLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICE 520 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~ 520 (532)
+|.+ ... ..+..+++|+.|+|++|.|..+++ + ..+++|+.|+|++| .+..+ |. + +.|++|+.|+|++
T Consensus 140 ~N~l--~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l-----~~l~~L~~L~Ls~N-~i~~l-~~-l-~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 140 NNKI--TDI-TVLSRLTKLDTLSLEDNQISDIVP-L-----AGLTKLQNLYLSKN-HISDL-RA-L-AGLKNLDVLELFS 206 (605)
T ss_dssp SSCC--CCC-GGGGSCTTCSEEECCSSCCCCCGG-G-----TTCTTCCEEECCSS-CCCBC-GG-G-TTCTTCSEEECCS
T ss_pred CCcc--CCc-hhhcccCCCCEEECcCCcCCCchh-h-----ccCCCCCEEECcCC-CCCCC-hH-H-ccCCCCCEEEccC
Confidence 9976 333 678999999999999999998866 4 67899999999986 47878 43 4 7899999999999
Q ss_pred CCc
Q 048213 521 CPV 523 (532)
Q Consensus 521 c~~ 523 (532)
|+-
T Consensus 207 N~l 209 (605)
T 1m9s_A 207 QEC 209 (605)
T ss_dssp EEE
T ss_pred CcC
Confidence 863
No 31
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=2.5e-12 Score=128.48 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=112.6
Q ss_pred ccccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc--------Cc-------
Q 048213 103 KDYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE--------SE------- 167 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~--------~~------- 167 (532)
..+..|+||+++++.|.+ +.. +++.|+|++|+|||+|++++++..... ....... +.
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLP----YIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCC----EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCC----EEEEEchhhccccCCCHHHHHHHH
Confidence 346789999999999999 765 699999999999999999999875321 1111100 00
Q ss_pred ---------------------------------------hhhHHHHHHHHhcc--CcEEEEEcCCCCcc-----cccccc
Q 048213 168 ---------------------------------------SGRARSLCNRLKKE--KMILVILDNIWENL-----DFHAVG 201 (532)
Q Consensus 168 ---------------------------------------~~~~~~l~~~l~~~--k~~LlVlDdv~~~~-----~~~~l~ 201 (532)
......+.+.+... ++++||+||++... +|..+.
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 01223344444421 38999999997643 222221
Q ss_pred cccCCCCCCeEEEEeecChHHhhhc---------CC-C-CceEEccCCCHHHHHHHHHHHhC--CCCCCcchHHHHHHHH
Q 048213 202 IPHGDDHKGCKVLLTARSLDVLSRK---------MD-S-QQDFWVGVLKEDEAWSLFKKMAG--DYIEGSEFKWVAKDVA 268 (532)
Q Consensus 202 ~~~~~~~~gs~ilvTtr~~~v~~~~---------~~-~-~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~~~~i~ 268 (532)
..+.....+.++|+|++........ .. . ...+.+.+|+.+++.+++..... +.. ... ...|+
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~----~~~i~ 236 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKD----YEVVY 236 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCC----HHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCc----HHHHH
Confidence 2221122467899999986532111 11 1 25789999999999999987542 111 111 17899
Q ss_pred HHcCCchHHHHHHHHHHc
Q 048213 269 KKCAGLPVSIVTVARALR 286 (532)
Q Consensus 269 ~~c~glPLai~~~~~~l~ 286 (532)
..|+|+|+++..++..+.
T Consensus 237 ~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHCSCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHc
Confidence 999999999999988765
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=3.3e-13 Score=129.97 Aligned_cols=97 Identities=26% Similarity=0.238 Sum_probs=42.8
Q ss_pred HhhhhcccccCCch-hhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecccc
Q 048213 373 VIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLR 443 (532)
Q Consensus 373 ~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~ 443 (532)
.+++.++.+..++. .+..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|++++|.
T Consensus 32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC
Confidence 34444444444433 34445555555555554444 12344445555555555444433 33444444444443
Q ss_pred ccCCCCCcccccCCCCCEEecCCcccc
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIE 470 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~ 470 (532)
. ....+..++++++|++|++++|.++
T Consensus 112 l-~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 112 L-ASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp C-CCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred c-cccCchhcccCCCCCEEECcCCccc
Confidence 3 1112223444444444444444443
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=3.7e-13 Score=132.13 Aligned_cols=142 Identities=17% Similarity=0.177 Sum_probs=68.4
Q ss_pred HHhhhhc-cccc-CCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 372 VVIDLTY-MNLL-SLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 372 ~~l~l~~-~~l~-~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
+++++.+ +.+. .+|..++.+++|++|++++|.+.. +..+.++++|++|++++|.+... .+++|++|++++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 3444442 3333 244444555555555555554442 33444555555555555544421 344555555555
Q ss_pred ccccCCCCCcccccCC-CCCEEecCCcccc-cccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEee
Q 048213 442 LRASAPNPTESEVALP-KLETVCLSSINIE-RIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEIC 519 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~-~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~ 519 (532)
|.+ ....|..+..++ +|++|+|++|.++ .+|..+ ..+. |++|+|++|. +...+|..+ +.+++|++|+++
T Consensus 159 N~l-~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-----~~l~-L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~ 229 (313)
T 1ogq_A 159 NRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-----ANLN-LAFVDLSRNM-LEGDASVLF-GSDKNTQKIHLA 229 (313)
T ss_dssp SCC-EEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-----GGCC-CSEEECCSSE-EEECCGGGC-CTTSCCSEEECC
T ss_pred Ccc-cCcCCHHHhhhhhcCcEEECcCCeeeccCChHH-----hCCc-ccEEECcCCc-ccCcCCHHH-hcCCCCCEEECC
Confidence 544 223444444444 5555555555444 233332 3333 6666666543 333334444 567777777777
Q ss_pred cCC
Q 048213 520 ECP 522 (532)
Q Consensus 520 ~c~ 522 (532)
+|.
T Consensus 230 ~N~ 232 (313)
T 1ogq_A 230 KNS 232 (313)
T ss_dssp SSE
T ss_pred CCc
Confidence 653
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=3.8e-13 Score=132.12 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=103.6
Q ss_pred hhHHhhhhccccc-CCchhhhccccccEEEeccccccC--cccccccc-cccEEeecccccccc------ccCCcceEEe
Q 048213 370 ARVVIDLTYMNLL-SLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELK-ILEILRLRVNELTRA------GSSQLKHLSV 439 (532)
Q Consensus 370 ~~~~l~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~-~L~~L~l~~~~l~~~------~l~~Lr~L~l 439 (532)
..+.+++.+|.+. .+|..+..+++|++|++++|.+.. +..+.+++ +|++|++++|.+... .++ |++|++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 3456666666666 456667777777777777776653 55666666 677777777766533 333 777777
Q ss_pred ccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEee
Q 048213 440 RGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEIC 519 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~ 519 (532)
++|.+ ....+..+..+++|++|+|++|.++..++.+ ..+++|++|+|++|.....+ |..+ +.+++|++|+|+
T Consensus 205 s~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~-p~~l-~~l~~L~~L~Ls 276 (313)
T 1ogq_A 205 SRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLGKV-----GLSKNLNGLDLRNNRIYGTL-PQGL-TQLKFLHSLNVS 276 (313)
T ss_dssp CSSEE-EECCGGGCCTTSCCSEEECCSSEECCBGGGC-----CCCTTCCEEECCSSCCEECC-CGGG-GGCTTCCEEECC
T ss_pred cCCcc-cCcCCHHHhcCCCCCEEECCCCceeeecCcc-----cccCCCCEEECcCCcccCcC-ChHH-hcCcCCCEEECc
Confidence 77766 4456667788888888888888877655544 56789999999986643355 7776 789999999999
Q ss_pred cCCccccc
Q 048213 520 ECPVLKEI 527 (532)
Q Consensus 520 ~c~~L~~i 527 (532)
+|+--..+
T Consensus 277 ~N~l~~~i 284 (313)
T 1ogq_A 277 FNNLCGEI 284 (313)
T ss_dssp SSEEEEEC
T ss_pred CCcccccC
Confidence 88533333
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.41 E-value=2.7e-13 Score=132.64 Aligned_cols=144 Identities=21% Similarity=0.190 Sum_probs=82.3
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccCc---ccccccccccEEeecccccccc------ccCCcceEEeccc
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDT---SVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGL 442 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~---~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~ 442 (532)
+.+++.+|.+..+|..+..+++|++|++++|.+... ..+.++++|++|++++|.+... .+++|++|++++|
T Consensus 81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 456666666666666666666666666666666552 2456666666666666655443 4556666666666
Q ss_pred cccCC-CCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 443 RASAP-NPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 443 ~~~~~-~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
.+ .. ..+..+..+++|++|+|++|.++.+++..+ ..+++|++|+|++|. +..+++..+ +.+++|++|++++|
T Consensus 161 ~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N 233 (306)
T 2z66_A 161 SF-QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF----NSLSSLQVLNMSHNN-FFSLDTFPY-KCLNSLQVLDYSLN 233 (306)
T ss_dssp EE-GGGEECSCCTTCTTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTSC-CSBCCSGGG-TTCTTCCEEECTTS
T ss_pred cc-ccccchhHHhhCcCCCEEECCCCCcCCcCHHHh----cCCCCCCEEECCCCc-cCccChhhc-cCcccCCEeECCCC
Confidence 54 11 244555666666666666666655533221 345566666666533 455533333 45666666666655
Q ss_pred C
Q 048213 522 P 522 (532)
Q Consensus 522 ~ 522 (532)
.
T Consensus 234 ~ 234 (306)
T 2z66_A 234 H 234 (306)
T ss_dssp C
T ss_pred C
Confidence 3
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=2.5e-13 Score=136.18 Aligned_cols=147 Identities=21% Similarity=0.173 Sum_probs=113.4
Q ss_pred HHhhhhcccccCCchh-hh-ccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 372 VVIDLTYMNLLSLPSS-LG-LLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~-~~-~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
+.+++++|.+..++.. +. .+++|++|++++|.+.. +..+.++++|++|+|++|++..+ .+++|++|+|++
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC
Confidence 4678888888887665 55 88899999999998887 34688889999999999988776 578899999999
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCc--cEEEee
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGL--QCLEIC 519 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L--~~L~l~ 519 (532)
|.+ ....+..|.++++|++|+|++|.|+.+|...+.. ...+++|+.|+|++ +.+..+++..+ ..++++ +.|+|+
T Consensus 122 N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-~~~l~~L~~L~L~~-N~l~~l~~~~~-~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 122 NHI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD-GNKLPKLMLLDLSS-NKLKKLPLTDL-QKLPAWVKNGLYLH 197 (361)
T ss_dssp SCC-CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----CTTCCEEECCS-SCCCCCCHHHH-HHSCHHHHTTEECC
T ss_pred Ccc-cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC-cccCCcCCEEECCC-CCCCccCHHHh-hhccHhhcceEEec
Confidence 877 4445677888899999999999998888776210 01478899999987 55888855555 778774 788888
Q ss_pred cCC
Q 048213 520 ECP 522 (532)
Q Consensus 520 ~c~ 522 (532)
+++
T Consensus 198 ~N~ 200 (361)
T 2xot_A 198 NNP 200 (361)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 37
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=2.2e-12 Score=123.23 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=119.3
Q ss_pred HHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEeccc
Q 048213 367 VARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGL 442 (532)
Q Consensus 367 ~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~ 442 (532)
.+.+...+++..+.+..++ .+..+++|++|++++|.+..++.+..+++|++|++++|.+..+ .+++|++|++++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 3455567888899998888 6899999999999999999977899999999999999998887 6889999999999
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
++ ...+. +.. ++|++|+|++|.++.++. + ..+++|+.|+|++| .++.+ + .+ +.+++|++|++++|.
T Consensus 96 ~l--~~l~~-~~~-~~L~~L~L~~N~l~~~~~-l-----~~l~~L~~L~Ls~N-~i~~~-~-~l-~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 96 RL--KNLNG-IPS-ACLSRLFLDNNELRDTDS-L-----IHLKNLEILSIRNN-KLKSI-V-ML-GFLSKLEVLDLHGNE 161 (263)
T ss_dssp CC--SCCTT-CCC-SSCCEEECCSSCCSBSGG-G-----TTCTTCCEEECTTS-CCCBC-G-GG-GGCTTCCEEECTTSC
T ss_pred cc--CCcCc-ccc-CcccEEEccCCccCCChh-h-----cCcccccEEECCCC-cCCCC-h-HH-ccCCCCCEEECCCCc
Confidence 77 33433 333 899999999999998753 4 67899999999985 58888 4 34 789999999999875
No 38
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=2.6e-13 Score=127.74 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=81.9
Q ss_pred HHhhhhccc-ccCCch-hhhccccccEEEecc-ccccC--cccccccccccEEeecccccccc----ccCCcc---eEEe
Q 048213 372 VVIDLTYMN-LLSLPS-SLGLLTNLQTLCLYY-CKLQD--TSVLGELKILEILRLRVNELTRA----GSSQLK---HLSV 439 (532)
Q Consensus 372 ~~l~l~~~~-l~~lp~-~~~~l~~L~~L~l~~-~~l~~--~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr---~L~l 439 (532)
+.+++.+|. +..+|. .|..+++|++|++++ |.+.. +..+.++++|++|++++|.+..+ .+++|+ +|++
T Consensus 58 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l 137 (239)
T 2xwt_C 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137 (239)
T ss_dssp CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEE
T ss_pred cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEEC
Confidence 345555554 544443 355555555555555 45544 22445555555555555555444 233444 6666
Q ss_pred ccc-cccCCCCCcccccCCCCC-EEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcC-CCccEE
Q 048213 440 RGL-RASAPNPTESEVALPKLE-TVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSF-VGLQCL 516 (532)
Q Consensus 440 ~~~-~~~~~~~~~~~~~l~~L~-~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L-~~L~~L 516 (532)
++| .. ....+..|.++++|+ +|++++|.++.+|... +..++|+.|+|++|..++.+++..+ +.+ ++|++|
T Consensus 138 ~~N~~l-~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~-----~~~~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L 210 (239)
T 2xwt_C 138 TDNPYM-TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-----FNGTKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLL 210 (239)
T ss_dssp ESCTTC-CEECTTTTTTTBSSEEEEECCSCCCCEECTTT-----TTTCEEEEEECTTCTTCCEECTTTT-TTCSBCCSEE
T ss_pred CCCcch-hhcCcccccchhcceeEEEcCCCCCcccCHhh-----cCCCCCCEEEcCCCCCcccCCHHHh-hccccCCcEE
Confidence 655 43 222233456666777 7777777666666655 4446677777776545666644444 566 777777
Q ss_pred EeecCCccccc
Q 048213 517 EICECPVLKEI 527 (532)
Q Consensus 517 ~l~~c~~L~~i 527 (532)
++++++ ++.+
T Consensus 211 ~l~~N~-l~~l 220 (239)
T 2xwt_C 211 DVSQTS-VTAL 220 (239)
T ss_dssp ECTTCC-CCCC
T ss_pred ECCCCc-cccC
Confidence 777643 4443
No 39
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=4e-13 Score=126.46 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=122.0
Q ss_pred hHHhhhhcccccCCch-hhhccccccEEEecccc-ccC--cccccccccccEEeecc-cccccc------ccCCcceEEe
Q 048213 371 RVVIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCK-LQD--TSVLGELKILEILRLRV-NELTRA------GSSQLKHLSV 439 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~-l~~--~~~i~~l~~L~~L~l~~-~~l~~~------~l~~Lr~L~l 439 (532)
.+.+++.++.+..+|. .+..+++|++|++++|. +.. +..+.++++|++|++++ |.++.+ .+++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 4578899999998876 58999999999999997 777 34789999999999998 888876 6789999999
Q ss_pred ccccccCCCCCcccccCCCCC---EEecCCc-ccccccccccccccccCCCcc-EEEeccCCCCCccchhhhhhcCCCcc
Q 048213 440 RGLRASAPNPTESEVALPKLE---TVCLSSI-NIERIWQNQVAAMSCGIQNLK-RLILFNCWNLTCLFTSSIISSFVGLQ 514 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~L~---~L~L~~~-~l~~lp~~~~~~~~~~L~~L~-~L~L~~c~~l~~l~p~~~~~~L~~L~ 514 (532)
++|.+ ...|. +..+++|+ +|++++| .++.+|...+ ..+++|+ +|+++++ .++.+++..+ .. ++|+
T Consensus 113 ~~n~l--~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~----~~l~~L~~~L~l~~n-~l~~i~~~~~-~~-~~L~ 182 (239)
T 2xwt_C 113 FNTGL--KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF----QGLCNETLTLKLYNN-GFTSVQGYAF-NG-TKLD 182 (239)
T ss_dssp EEECC--CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT----TTTBSSEEEEECCSC-CCCEECTTTT-TT-CEEE
T ss_pred CCCCC--ccccc-cccccccccccEEECCCCcchhhcCcccc----cchhcceeEEEcCCC-CCcccCHhhc-CC-CCCC
Confidence 99977 34554 78888888 9999999 9999987652 4689999 9999985 5788844444 34 8999
Q ss_pred EEEeecCCcccccc
Q 048213 515 CLEICECPVLKEII 528 (532)
Q Consensus 515 ~L~l~~c~~L~~i~ 528 (532)
+|++++|+.++.+.
T Consensus 183 ~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 183 AVYLNKNKYLTVID 196 (239)
T ss_dssp EEECTTCTTCCEEC
T ss_pred EEEcCCCCCcccCC
Confidence 99999998777664
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.40 E-value=7.2e-13 Score=137.10 Aligned_cols=142 Identities=25% Similarity=0.290 Sum_probs=88.9
Q ss_pred HHhhhhcccccCC-chhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccc
Q 048213 372 VVIDLTYMNLLSL-PSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGL 442 (532)
Q Consensus 372 ~~l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~ 442 (532)
+.+++.+|.+..+ |..|..+++|++|++++|.+.. +..+.++++|++|+|++|.+..+ .+++|++|+|++|
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 4566666666665 3446677777777777776665 34566677777777777766655 3566777777777
Q ss_pred cccCCCCCcccccCCCCCEEecCCc-ccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 443 RASAPNPTESEVALPKLETVCLSSI-NIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
.+ ....+..+.++++|++|+|++| .+..+|...+ .++++|++|+|++| .+..+ |. + ..+++|++|+|++|
T Consensus 158 ~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~----~~l~~L~~L~L~~n-~l~~~-~~-~-~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 158 PI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF----EGLFNLKYLNLGMC-NIKDM-PN-L-TPLVGLEELEMSGN 228 (452)
T ss_dssp CC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTT----TTCTTCCEEECTTS-CCSSC-CC-C-TTCTTCCEEECTTS
T ss_pred Cc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhc----cCCCCCCEEECCCC-ccccc-cc-c-cccccccEEECcCC
Confidence 65 2223345666777777777764 5555555431 35677777777764 35666 32 2 56777777777766
Q ss_pred C
Q 048213 522 P 522 (532)
Q Consensus 522 ~ 522 (532)
.
T Consensus 229 ~ 229 (452)
T 3zyi_A 229 H 229 (452)
T ss_dssp C
T ss_pred c
Confidence 4
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.40 E-value=3.6e-13 Score=131.79 Aligned_cols=145 Identities=20% Similarity=0.136 Sum_probs=107.2
Q ss_pred hhHHhhhhcccccCC---chhhhccccccEEEeccccccC-cccccccccccEEeecccccccc-------ccCCcceEE
Q 048213 370 ARVVIDLTYMNLLSL---PSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA-------GSSQLKHLS 438 (532)
Q Consensus 370 ~~~~l~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~-------~l~~Lr~L~ 438 (532)
..+.+++.++.+..+ |..+..+++|++|++++|.+.. +..+..+++|++|++++|.+..+ .+++|++|+
T Consensus 53 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEE
Confidence 345666666666543 4556667777777777777666 44577778888888888766554 567888888
Q ss_pred eccccccCCCCCcccccCCCCCEEecCCccccc--ccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEE
Q 048213 439 VRGLRASAPNPTESEVALPKLETVCLSSINIER--IWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCL 516 (532)
Q Consensus 439 l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L 516 (532)
+++|.. ....+..+..+++|++|++++|.+.. +|..+ ..+++|++|+|++|. +..++|..+ +.+++|++|
T Consensus 133 l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L 204 (306)
T 2z66_A 133 ISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-----TELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSLQVL 204 (306)
T ss_dssp CTTSCC-EECSTTTTTTCTTCCEEECTTCEEGGGEECSCC-----TTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEE
T ss_pred CCCCcC-CccchhhcccCcCCCEEECCCCccccccchhHH-----hhCcCCCEEECCCCC-cCCcCHHHh-cCCCCCCEE
Confidence 888876 44556667888889999999987765 55555 678999999999854 777756666 789999999
Q ss_pred EeecCC
Q 048213 517 EICECP 522 (532)
Q Consensus 517 ~l~~c~ 522 (532)
++++|.
T Consensus 205 ~L~~N~ 210 (306)
T 2z66_A 205 NMSHNN 210 (306)
T ss_dssp ECTTSC
T ss_pred ECCCCc
Confidence 999875
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.39 E-value=5e-13 Score=139.28 Aligned_cols=149 Identities=23% Similarity=0.214 Sum_probs=86.7
Q ss_pred hHHhhhhcccccCC-chhhhccccccEEEeccccccCc--ccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 371 RVVIDLTYMNLLSL-PSSLGLLTNLQTLCLYYCKLQDT--SVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 371 ~~~l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
.+.+++.+|.+..+ |..|+.+++|++|++++|.+... ..+.++++|++|++++|.+..+ .+++|++|++++
T Consensus 58 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC
T ss_pred CCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC
Confidence 34566666666654 45566666677777766666652 2356666677777766666554 456666666666
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
|.. ....+..+.++++|++|+|++|.++.+|...+ ..+++|+.|+|+++. +..+++..+ +.+++|++|++++|
T Consensus 138 n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 138 NDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL----SHLHGLIVLRLRHLN-INAIRDYSF-KRLYRLKVLEISHW 210 (477)
T ss_dssp TTC-CEECTTSSTTCTTCCEEEEESCCCSSCCHHHH----TTCTTCCEEEEESCC-CCEECTTCS-CSCTTCCEEEEECC
T ss_pred Ccc-ceeChhhccCCCCCCEEECCCCcCcccChhHh----cccCCCcEEeCCCCc-CcEeChhhc-ccCcccceeeCCCC
Confidence 655 33344456666666666666666666654431 345566666665533 444433333 55566666666655
Q ss_pred Ccccc
Q 048213 522 PVLKE 526 (532)
Q Consensus 522 ~~L~~ 526 (532)
+.+..
T Consensus 211 ~~~~~ 215 (477)
T 2id5_A 211 PYLDT 215 (477)
T ss_dssp TTCCE
T ss_pred ccccc
Confidence 54433
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=1.2e-12 Score=125.89 Aligned_cols=151 Identities=22% Similarity=0.162 Sum_probs=104.1
Q ss_pred HhhHHhhhhcccccCCch-hhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEe
Q 048213 369 RARVVIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSV 439 (532)
Q Consensus 369 ~~~~~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l 439 (532)
...+.+++.+|.+..++. .+..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 344567777777777654 57778888888888887766 34577778888888887776655 5677888888
Q ss_pred ccccccCCCCCcccccCCCCCEEecCCcccccccccccc-----------------------cccccCCCccEEEeccCC
Q 048213 440 RGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVA-----------------------AMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~-----------------------~~~~~L~~L~~L~L~~c~ 496 (532)
++|.+.....|..+.++++|++|+|++|.++.++...+. ...+...+|+.|+|++|.
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc
Confidence 877662123466777777788888877776665532211 112344589999999854
Q ss_pred CCCccchhhhhhcCCCccEEEeecC
Q 048213 497 NLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 497 ~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
++.+++..+ +.+++|++|+++++
T Consensus 212 -l~~~~~~~~-~~l~~L~~L~l~~N 234 (276)
T 2z62_A 212 -LKSVPDGIF-DRLTSLQKIWLHTN 234 (276)
T ss_dssp -CSCCCTTTT-TTCCSCCEEECCSS
T ss_pred -eeecCHhHh-cccccccEEEccCC
Confidence 888844444 78999999999943
No 44
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.39 E-value=9e-13 Score=145.51 Aligned_cols=152 Identities=18% Similarity=0.143 Sum_probs=108.7
Q ss_pred hhHHhhhhccccc-CCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc-----------------
Q 048213 370 ARVVIDLTYMNLL-SLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA----------------- 429 (532)
Q Consensus 370 ~~~~l~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~----------------- 429 (532)
..+.+++.+|.+. .+|..++.+++|++|++++|.+.. |..++++++|++|++++|.+.+.
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence 3455666666665 356666777777777777776654 55667777777777776654311
Q ss_pred -----------------------------------------------------------ccCCcceEEeccccccCCCCC
Q 048213 430 -----------------------------------------------------------GSSQLKHLSVRGLRASAPNPT 450 (532)
Q Consensus 430 -----------------------------------------------------------~l~~Lr~L~l~~~~~~~~~~~ 450 (532)
.+++|+.|+|++|++ ....|
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l-~g~ip 649 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-SGYIP 649 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC-BSCCC
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc-cccCC
Confidence 135677888888877 66778
Q ss_pred cccccCCCCCEEecCCcccc-cccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCccccccc
Q 048213 451 ESEVALPKLETVCLSSINIE-RIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPVLKEIIV 529 (532)
Q Consensus 451 ~~~~~l~~L~~L~L~~~~l~-~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L~~i~~ 529 (532)
..++++++|++|+|++|.++ .+|..+ ..|++|++|+|++|+..+.+ |..+ +.|++|++|+|++|+--..|+.
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l-----~~L~~L~~LdLs~N~l~g~i-p~~l-~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEV-----GDLRGLNILDLSSNKLDGRI-PQAM-SALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCEECC-CGGG-GGCCCCSEEECCSSEEEEECCS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHH-----hCCCCCCEEECCCCcccCcC-ChHH-hCCCCCCEEECcCCcccccCCC
Confidence 88888888888888888887 666666 78889999999986644466 7777 7899999999998875555543
No 45
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=7.3e-13 Score=118.42 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=104.9
Q ss_pred hhccccccEEEeccccccCcccccccc-cccEEeecccccccc----ccCCcceEEeccccccCCCCCc-ccccCCCCCE
Q 048213 388 LGLLTNLQTLCLYYCKLQDTSVLGELK-ILEILRLRVNELTRA----GSSQLKHLSVRGLRASAPNPTE-SEVALPKLET 461 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~~l~~~~~i~~l~-~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~~~~~-~~~~l~~L~~ 461 (532)
+.++.+|+.|++++|.+..++.+..+. +|++|++++|.++.+ .+++|++|++++|.+ ...+. .+..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI--CRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCC--CEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcc--cccCcchhhcCCCCCE
Confidence 567889999999999998866677666 999999999988876 778999999999987 34443 4589999999
Q ss_pred EecCCcccccccc--cccccccccCCCccEEEeccCCCCCccchhh---hhhcCCCccEEEeecCCc
Q 048213 462 VCLSSINIERIWQ--NQVAAMSCGIQNLKRLILFNCWNLTCLFTSS---IISSFVGLQCLEICECPV 523 (532)
Q Consensus 462 L~L~~~~l~~lp~--~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~---~~~~L~~L~~L~l~~c~~ 523 (532)
|+|++|.++.+|. .+ ..+++|++|++++|+ +..+ |.. .++.+++|++|++++++.
T Consensus 93 L~L~~N~i~~~~~~~~l-----~~l~~L~~L~l~~N~-i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPL-----ASLKSLTYLCILRNP-VTNK-KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCCCGGGGGGG-----GGCTTCCEEECCSSG-GGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCCcchhhHhh-----hcCCCCCEEEecCCC-CCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999998887 44 578999999999865 6777 543 237999999999998863
No 46
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=6.4e-13 Score=115.23 Aligned_cols=123 Identities=24% Similarity=0.262 Sum_probs=98.6
Q ss_pred cccccEEEecccccc--C-cccccccccccEEeecccccccc----ccCCcceEEeccccccCCCCCcccccCCCCCEEe
Q 048213 391 LTNLQTLCLYYCKLQ--D-TSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVC 463 (532)
Q Consensus 391 l~~L~~L~l~~~~l~--~-~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 463 (532)
.++|+.|++++|.+. . +..+..+++|++|++++|.+..+ .+++|++|++++|.+ ....|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV-SGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCC-CSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcc-cchHHHHhhhCCCCCEEE
Confidence 467889999999887 3 55678889999999999988776 678899999999987 333666777899999999
Q ss_pred cCCccccccc--ccccccccccCCCccEEEeccCCCCCccch--hhhhhcCCCccEEEeec
Q 048213 464 LSSINIERIW--QNQVAAMSCGIQNLKRLILFNCWNLTCLFT--SSIISSFVGLQCLEICE 520 (532)
Q Consensus 464 L~~~~l~~lp--~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p--~~~~~~L~~L~~L~l~~ 520 (532)
+++|.++.+| ..+ ..+++|++|++++|+ +..+++ ...++.+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~-----~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPL-----KKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGG-----GGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHH-----hhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998875 444 678999999999864 777744 13348899999998864
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=135.13 Aligned_cols=141 Identities=23% Similarity=0.301 Sum_probs=96.9
Q ss_pred HHhhhhcccccCCc-hhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccc
Q 048213 372 VVIDLTYMNLLSLP-SSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGL 442 (532)
Q Consensus 372 ~~l~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~ 442 (532)
+.+++.+|.+..++ ..|..+++|++|++++|.+.. +..+.++++|++|+|++|+++.+ .+++|++|+|++|
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 56677777776654 457777777777777777766 34677777777777777777665 4567777777777
Q ss_pred cccCCCCCcccccCCCCCEEecCCc-ccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 443 RASAPNPTESEVALPKLETVCLSSI-NIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
.+ ....+..|.++++|++|+|++| .+..++...+ .++++|++|+|++| .+..+ |. + ..+++|++|+|++|
T Consensus 147 ~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~----~~l~~L~~L~L~~n-~l~~~-~~-~-~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 147 PI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF----EGLSNLRYLNLAMC-NLREI-PN-L-TPLIKLDELDLSGN 217 (440)
T ss_dssp CC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTT----TTCSSCCEEECTTS-CCSSC-CC-C-TTCSSCCEEECTTS
T ss_pred cc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchh----hcccccCeecCCCC-cCccc-cc-c-CCCcccCEEECCCC
Confidence 65 3333446677777777777774 5666655432 45777888888774 46777 43 3 57788888888877
No 48
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.38 E-value=1.1e-11 Score=123.40 Aligned_cols=175 Identities=12% Similarity=0.062 Sum_probs=113.9
Q ss_pred cccccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEec-----------------
Q 048213 102 NKDYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVE----------------- 164 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~----------------- 164 (532)
...+..|+||++++++|.+++..+ +++.|+|++|+|||||++++++... ......
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP------GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS------EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC------cEEEEeecccccccCCCHHHHHH
Confidence 345678999999999999988754 7999999999999999999987631 111000
Q ss_pred -------------------------------cCchhhHHHHHHHHhccCcEEEEEcCCCCccc---------cccccccc
Q 048213 165 -------------------------------ESESGRARSLCNRLKKEKMILVILDNIWENLD---------FHAVGIPH 204 (532)
Q Consensus 165 -------------------------------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~~~ 204 (532)
.........+.+.....++++||+||++.... +..+....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 00011122222222222489999999987543 12221111
Q ss_pred CCCCCCeEEEEeecChHHhhhc----------C-CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 048213 205 GDDHKGCKVLLTARSLDVLSRK----------M-DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAG 273 (532)
Q Consensus 205 ~~~~~gs~ilvTtr~~~v~~~~----------~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g 273 (532)
....+.++|+|++........ . .....+.+.+|+.+++.+++........ .....+.+..|+..|+|
T Consensus 160 -~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 160 -DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-LDVPENEIEEAVELLDG 237 (350)
T ss_dssp -HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHTT
T ss_pred -HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCC
Confidence 112478899998876532111 1 1124789999999999999987543111 11225678899999999
Q ss_pred chHHHHHHHHHHc
Q 048213 274 LPVSIVTVARALR 286 (532)
Q Consensus 274 lPLai~~~~~~l~ 286 (532)
+|+++..++..+.
T Consensus 238 ~P~~l~~~~~~~~ 250 (350)
T 2qen_A 238 IPGWLVVFGVEYL 250 (350)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999987653
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.38 E-value=7.9e-13 Score=132.15 Aligned_cols=144 Identities=22% Similarity=0.196 Sum_probs=99.8
Q ss_pred hHHhhhhcccccCCch-hhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 371 RVVIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
.+.+++.++.+..+|. .+..+++|++|++++|.+.. +..+.++++|++|++++|.++.+ .+++|++|++++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCC
Confidence 3567777777777665 57777788888887777766 34577777888888887777666 467788888887
Q ss_pred ccccCCCCCc--ccccCCCCCEEecCCc-ccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEe
Q 048213 442 LRASAPNPTE--SEVALPKLETVCLSSI-NIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEI 518 (532)
Q Consensus 442 ~~~~~~~~~~--~~~~l~~L~~L~L~~~-~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l 518 (532)
|.+ ...+. .+.++++|++|++++| .++.++...+ .++++|++|++++|. +..+.|..+ +.+++|++|++
T Consensus 134 n~l--~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l 205 (353)
T 2z80_A 134 NPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF----AGLTFLEELEIDASD-LQSYEPKSL-KSIQNVSHLIL 205 (353)
T ss_dssp CCC--SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT----TTCCEEEEEEEEETT-CCEECTTTT-TTCSEEEEEEE
T ss_pred CCC--cccCchhhhccCCCCcEEECCCCccccccCHHHc----cCCCCCCEEECCCCC-cCccCHHHH-hccccCCeecC
Confidence 765 33333 5677778888888777 4666644331 457778888887754 555545555 67788888888
Q ss_pred ecCC
Q 048213 519 CECP 522 (532)
Q Consensus 519 ~~c~ 522 (532)
++|.
T Consensus 206 ~~n~ 209 (353)
T 2z80_A 206 HMKQ 209 (353)
T ss_dssp ECSC
T ss_pred CCCc
Confidence 7764
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.38 E-value=9.4e-13 Score=137.21 Aligned_cols=145 Identities=23% Similarity=0.267 Sum_probs=122.9
Q ss_pred hHHhhhhcccccCCc-hhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 371 RVVIDLTYMNLLSLP-SSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
.+.+++.++.+..++ ..|..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|+|++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 357899999998874 569999999999999999887 56799999999999999988877 578999999999
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
|.+ ....+..+.++++|++|+|++|.++.++...+ ..+++|+.|+|++| .+..+++..+ +.+++|+.|++++|
T Consensus 114 n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~l~~n 186 (477)
T 2id5_A 114 NKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAF----SGLNSLEQLTLEKC-NLTSIPTEAL-SHLHGLIVLRLRHL 186 (477)
T ss_dssp SCC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSS----TTCTTCCEEEEESC-CCSSCCHHHH-TTCTTCCEEEEESC
T ss_pred Ccc-ccCChhHccccccCCEEECCCCccceeChhhc----cCCCCCCEEECCCC-cCcccChhHh-cccCCCcEEeCCCC
Confidence 987 45566788999999999999999988765442 57899999999986 4788855555 89999999999987
Q ss_pred C
Q 048213 522 P 522 (532)
Q Consensus 522 ~ 522 (532)
.
T Consensus 187 ~ 187 (477)
T 2id5_A 187 N 187 (477)
T ss_dssp C
T ss_pred c
Confidence 4
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.37 E-value=1.7e-12 Score=128.35 Aligned_cols=147 Identities=24% Similarity=0.235 Sum_probs=77.0
Q ss_pred HhhhhcccccCCch-hhhccccccEEEeccccccC--cccccccccccEEeeccccc---------------------cc
Q 048213 373 VIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNEL---------------------TR 428 (532)
Q Consensus 373 ~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l---------------------~~ 428 (532)
.+++.++.+..+|. .++.+++|++|++++|.+.. +..+.++++|++|++++|.+ ..
T Consensus 56 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK 135 (330)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCB
T ss_pred EEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccc
Confidence 34444444444433 34445555555555554444 23344444455555444443 33
Q ss_pred c------ccCCcceEEecccccc-CCCCCcccccCCCCCEEecCCccccccccccc-----------------ccccccC
Q 048213 429 A------GSSQLKHLSVRGLRAS-APNPTESEVALPKLETVCLSSINIERIWQNQV-----------------AAMSCGI 484 (532)
Q Consensus 429 ~------~l~~Lr~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~-----------------~~~~~~L 484 (532)
+ .+++|++|++++|... ....+..+.++++|++|++++|.++.+|..+. +.....+
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTC
T ss_pred cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCC
Confidence 3 4556666666666541 11334556667777777777776666654331 1112345
Q ss_pred CCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 485 QNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 485 ~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
++|++|+|++|. +..+++..+ +.+++|++|++++|
T Consensus 216 ~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N 250 (330)
T 1xku_A 216 NNLAKLGLSFNS-ISAVDNGSL-ANTPHLRELHLNNN 250 (330)
T ss_dssp TTCCEEECCSSC-CCEECTTTG-GGSTTCCEEECCSS
T ss_pred CCCCEEECCCCc-CceeChhhc-cCCCCCCEEECCCC
Confidence 666666666533 555534344 56667777777666
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.37 E-value=7.2e-13 Score=132.44 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=113.7
Q ss_pred HHHHHhhHHhhhhcccccCCc-hhhhccccccEEEeccccccC-cc-cccccccccEEeecccccccc-------ccCCc
Q 048213 365 MEVARARVVIDLTYMNLLSLP-SSLGLLTNLQTLCLYYCKLQD-TS-VLGELKILEILRLRVNELTRA-------GSSQL 434 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~-~~-~i~~l~~L~~L~l~~~~l~~~-------~l~~L 434 (532)
+......+.+++.+|.+..++ ..++.+++|++|++++|.+.. ++ .+.++++|++|++++|.+..+ .+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 344455577888888888764 458888999999999988887 33 378888999999998877655 56789
Q ss_pred ceEEeccccccCCCCCcccccCCCCCEEecCCccccccc-ccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCc
Q 048213 435 KHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIW-QNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGL 513 (532)
Q Consensus 435 r~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L 513 (532)
++|++++|+......+..+.++++|++|++++|.++.++ ..+ ..+++|++|+++++. +..+ |..+.+.+++|
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L 224 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL-----KSIQNVSHLILHMKQ-HILL-LEIFVDVTSSV 224 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-----TTCSEEEEEEEECSC-STTH-HHHHHHHTTTE
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH-----hccccCCeecCCCCc-cccc-hhhhhhhcccc
Confidence 999998885312334567788889999999998887763 333 567889999998754 6777 55554678899
Q ss_pred cEEEeecCC
Q 048213 514 QCLEICECP 522 (532)
Q Consensus 514 ~~L~l~~c~ 522 (532)
++|++++|.
T Consensus 225 ~~L~L~~n~ 233 (353)
T 2z80_A 225 ECLELRDTD 233 (353)
T ss_dssp EEEEEESCB
T ss_pred cEEECCCCc
Confidence 999998875
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=1.7e-12 Score=139.04 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=43.2
Q ss_pred hhHHhhhhcccccCCchh-hhccccccEEEeccccccC-cc-cccccccccEEeecccccccc------ccCCcceEEec
Q 048213 370 ARVVIDLTYMNLLSLPSS-LGLLTNLQTLCLYYCKLQD-TS-VLGELKILEILRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 370 ~~~~l~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~-~~-~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
..+.+++.+|.+..+|+. |+.+++|++|++++|.+.. ++ .++++++|++|++++|.+..+ .+++|++|+++
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 345556666666555443 4666666666666666655 22 245666666666666655544 45566666666
Q ss_pred cccc
Q 048213 441 GLRA 444 (532)
Q Consensus 441 ~~~~ 444 (532)
+|.+
T Consensus 180 ~N~l 183 (597)
T 3oja_B 180 SNRL 183 (597)
T ss_dssp TSCC
T ss_pred CCCC
Confidence 6644
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.36 E-value=1e-12 Score=129.01 Aligned_cols=142 Identities=18% Similarity=0.121 Sum_probs=114.0
Q ss_pred HhhHHhhhhcccccCCc-hhhhccccccEEEeccccccC----cccc--cccccccEEeecccccccc---------ccC
Q 048213 369 RARVVIDLTYMNLLSLP-SSLGLLTNLQTLCLYYCKLQD----TSVL--GELKILEILRLRVNELTRA---------GSS 432 (532)
Q Consensus 369 ~~~~~l~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~----~~~i--~~l~~L~~L~l~~~~l~~~---------~l~ 432 (532)
...+++++.+|.+..++ ..++.+++|++|++++|.+.. +..+ .++++|++|++++|.+..+ .++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 45577888888888876 668899999999999998654 3334 7889999999999988844 458
Q ss_pred CcceEEeccccccCCCCC-cccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCC
Q 048213 433 QLKHLSVRGLRASAPNPT-ESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFV 511 (532)
Q Consensus 433 ~Lr~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~ 511 (532)
+|++|++++|.+ ....+ ..+..+++|++|+|++|.|+.+|..+ + ++|++|+|++ +.++.+ |. + +.++
T Consensus 229 ~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~-----~--~~L~~L~Ls~-N~l~~~-p~-~-~~l~ 296 (312)
T 1wwl_A 229 QLQGLDLSHNSL-RDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL-----P--AKLSVLDLSY-NRLDRN-PS-P-DELP 296 (312)
T ss_dssp CCSEEECTTSCC-CSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC-----C--SEEEEEECCS-SCCCSC-CC-T-TTSC
T ss_pred CCCEEECCCCcC-CcccchhhhhhcCCCCEEECCCCccChhhhhc-----c--CCceEEECCC-CCCCCC-hh-H-hhCC
Confidence 999999999987 33332 45667899999999999999888876 5 8899999997 458888 55 5 7899
Q ss_pred CccEEEeecCC
Q 048213 512 GLQCLEICECP 522 (532)
Q Consensus 512 ~L~~L~l~~c~ 522 (532)
+|++|++++++
T Consensus 297 ~L~~L~L~~N~ 307 (312)
T 1wwl_A 297 QVGNLSLKGNP 307 (312)
T ss_dssp EEEEEECTTCT
T ss_pred CCCEEeccCCC
Confidence 99999999875
No 55
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.36 E-value=6.1e-12 Score=125.22 Aligned_cols=147 Identities=17% Similarity=0.159 Sum_probs=71.7
Q ss_pred cHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEe
Q 048213 364 RMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSV 439 (532)
Q Consensus 364 ~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l 439 (532)
..+++...+.+++.++.+..+|. +..+++|++|++++|.+.+.+.+.++++|++|++++|.+..+ .+++|++|++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred cchhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 34444444455555555544443 455555555555555554433355555555555555544443 3444555555
Q ss_pred cccccc--------------------CCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCC
Q 048213 440 RGLRAS--------------------APNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLT 499 (532)
Q Consensus 440 ~~~~~~--------------------~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~ 499 (532)
++|... ....+..+..+++|++|++++|.+..++. + ..+++|+.|++++|. +.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~-----~~l~~L~~L~l~~n~-l~ 190 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-I-----ANLTDLYSLSLNYNQ-IE 190 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-G-----GGCTTCSEEECTTSC-CC
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-h-----ccCCCCCEEEccCCc-cc
Confidence 444330 01122234555555555555555544433 2 345666666666543 45
Q ss_pred ccchhhhhhcCCCccEEEeecC
Q 048213 500 CLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 500 ~l~p~~~~~~L~~L~~L~l~~c 521 (532)
.+++ + ..+++|++|++++|
T Consensus 191 ~~~~--~-~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 191 DISP--L-ASLTSLHYFTAYVN 209 (347)
T ss_dssp CCGG--G-GGCTTCCEEECCSS
T ss_pred cccc--c-cCCCccceeecccC
Confidence 5522 2 45666666666554
No 56
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.35 E-value=1.8e-12 Score=143.09 Aligned_cols=148 Identities=20% Similarity=0.142 Sum_probs=118.6
Q ss_pred HHhhhhccccc-CCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccc
Q 048213 372 VVIDLTYMNLL-SLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGL 442 (532)
Q Consensus 372 ~~l~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~ 442 (532)
+.+++.+|.+. .+|..++.+++|++|++++|.+.+ +..+.++++|++|++++|.+.+. .+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 45666777666 467788888889999998888875 66788888999999988887754 6788999999999
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccc-cccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIE-RIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
++ ....|..+.++++|++|+|++|.++ .+|.++ ..+++|++|+|++|...+.+ |..+ +.+++|++|++++|
T Consensus 477 ~l-~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~-p~~l-~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 477 DL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-----GRLENLAILKLSNNSFSGNI-PAEL-GDCRSLIWLDLNTN 548 (768)
T ss_dssp CC-CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCEEEC-CGGG-GGCTTCCEEECCSS
T ss_pred cc-cCcCCHHHhcCCCCCEEEccCCccCCcCChHH-----hcCCCCCEEECCCCcccCcC-CHHH-cCCCCCCEEECCCC
Confidence 87 5577888899999999999999887 566666 67899999999987755566 7777 78999999999988
Q ss_pred Cccccc
Q 048213 522 PVLKEI 527 (532)
Q Consensus 522 ~~L~~i 527 (532)
+-...+
T Consensus 549 ~l~g~i 554 (768)
T 3rgz_A 549 LFNGTI 554 (768)
T ss_dssp EEESBC
T ss_pred ccCCcC
Confidence 654343
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=133.76 Aligned_cols=143 Identities=22% Similarity=0.214 Sum_probs=87.4
Q ss_pred HhhhhcccccCCch-hhhccccccEEEecccc-ccC--cccccccccccEEeecccccccc----ccCCcceEEeccccc
Q 048213 373 VIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCK-LQD--TSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRA 444 (532)
Q Consensus 373 ~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~-l~~--~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~ 444 (532)
.+++.+|.+..+|. .+..+++|++|++++|. +.. ...+.++++|++|++++|+++.+ .+++|+.|+|++|.+
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 44455555544433 24555555555555432 222 22455666666666666666555 456677777777765
Q ss_pred cCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 445 SAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 445 ~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
....+..|.++++|++|+|++|.++.++...+ ..+++|++|+|++| .+..+++..+ ..+++|++|+|+++|
T Consensus 220 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 220 -SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF----DNLQSLVEINLAHN-NLTLLPHDLF-TPLHHLERIHLHHNP 290 (440)
T ss_dssp -CEECTTTTTTCTTCCEEECTTCCCCEECTTSS----TTCTTCCEEECTTS-CCCCCCTTTT-SSCTTCCEEECCSSC
T ss_pred -CccChhhhccCccCCEEECCCCceeEEChhhh----cCCCCCCEEECCCC-CCCccChhHh-ccccCCCEEEcCCCC
Confidence 33445667777777777777777776655442 45778888888874 5777744444 678888888888776
No 58
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=1.1e-12 Score=116.17 Aligned_cols=122 Identities=19% Similarity=0.102 Sum_probs=107.5
Q ss_pred HHhhhhccccc--CCchhhhccccccEEEeccccccCcccccccccccEEeeccccccc-c-----ccCCcceEEecccc
Q 048213 372 VVIDLTYMNLL--SLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTR-A-----GSSQLKHLSVRGLR 443 (532)
Q Consensus 372 ~~l~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~-~-----~l~~Lr~L~l~~~~ 443 (532)
+.+++.++.+. .+|..+..+++|++|++++|.+.....+..+++|++|++++|.+.. + .+++|++|++++|.
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 106 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc
Confidence 57889999998 7898899999999999999999888889999999999999999988 3 58999999999997
Q ss_pred ccCCCCC--cccccCCCCCEEecCCcccccccc----cccccccccCCCccEEEeccCCCCCcc
Q 048213 444 ASAPNPT--ESEVALPKLETVCLSSINIERIWQ----NQVAAMSCGIQNLKRLILFNCWNLTCL 501 (532)
Q Consensus 444 ~~~~~~~--~~~~~l~~L~~L~L~~~~l~~lp~----~~~~~~~~~L~~L~~L~L~~c~~l~~l 501 (532)
+ ...+ ..+..+++|++|++++|.++.+|. .+ ..+++|++|++++|. +.++
T Consensus 107 l--~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-----~~l~~L~~L~l~~n~-~~~~ 162 (168)
T 2ell_A 107 L--KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF-----KLLPQLTYLDGYDRE-DQEA 162 (168)
T ss_dssp C--CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH-----TTCSSCCEETTEETT-SCBC
T ss_pred c--CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH-----HhCccCcEecCCCCC-hhhc
Confidence 7 4433 688999999999999999998887 33 578999999999976 5666
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=1.3e-12 Score=139.95 Aligned_cols=143 Identities=21% Similarity=0.162 Sum_probs=79.7
Q ss_pred hHHhhhhcccccCCchh-hhccccccEEEeccccccC--cccccccccccEEeecccccccc------------------
Q 048213 371 RVVIDLTYMNLLSLPSS-LGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------------------ 429 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------------------ 429 (532)
.+.+++.+|.+..+|.. |+.+++|++|++++|.+.. +..+.++++|++|++++|.+..+
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc
Confidence 34556666666665554 3566666666666665554 22455566666666655544432
Q ss_pred -----------------------------------------------ccCCcceEEeccccccCCCCCcccccCCCCCEE
Q 048213 430 -----------------------------------------------GSSQLKHLSVRGLRASAPNPTESEVALPKLETV 462 (532)
Q Consensus 430 -----------------------------------------------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L 462 (532)
.+++|++|+|++|.+ ....|..++.+++|++|
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERL 283 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC-CEEESGGGTTCSSCCEE
T ss_pred ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCcc-CCCCHHHhcCccCCCEE
Confidence 233444444444443 22234455555666666
Q ss_pred ecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 463 CLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 463 ~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
+|++|.++.+|... ..+++|++|+|++|. +..+ |..+ +.+++|++|+|++|+
T Consensus 284 ~Ls~N~l~~l~~~~-----~~l~~L~~L~Ls~N~-l~~i-~~~~-~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 284 YISNNRLVALNLYG-----QPIPTLKVLDLSHNH-LLHV-ERNQ-PQFDRLENLYLDHNS 335 (597)
T ss_dssp ECTTSCCCEEECSS-----SCCTTCCEEECCSSC-CCCC-GGGH-HHHTTCSEEECCSSC
T ss_pred ECCCCCCCCCCccc-----ccCCCCcEEECCCCC-CCcc-Cccc-ccCCCCCEEECCCCC
Confidence 66666555555443 446677777777643 5566 5444 566777777776654
No 60
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=2e-12 Score=129.53 Aligned_cols=147 Identities=20% Similarity=0.165 Sum_probs=118.0
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccC--ccccc-ccccccEEeecccccccc------ccCCcceEEeccc
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLG-ELKILEILRLRVNELTRA------GSSQLKHLSVRGL 442 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~-~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~ 442 (532)
..+++.++.+..+|..+. .+++.|++++|.+.. +..+. ++++|++|+|++|++..+ .+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 356788888988998654 468999999999988 33455 899999999999999877 6789999999999
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhh---hcCCCccEEEee
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSII---SSFVGLQCLEIC 519 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~---~~L~~L~~L~l~ 519 (532)
++ ....+..|.++++|++|+|++|.|+.+++..+ ..+++|+.|+|++ +.+..+ |..++ +.+++|++|+|+
T Consensus 99 ~l-~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~----~~l~~L~~L~L~~-N~l~~l-~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 99 HL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF----EDMAQLQKLYLSQ-NQISRF-PVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCS-SCCCSC-CGGGTC----CTTCCEEECC
T ss_pred cC-CcCCHHHhCCCcCCCEEECCCCcccEECHHHh----CCcccCCEEECCC-CcCCee-CHHHhcCcccCCcCCEEECC
Confidence 87 34445578999999999999999998865442 5789999999998 568889 55443 469999999999
Q ss_pred cCCcccccc
Q 048213 520 ECPVLKEII 528 (532)
Q Consensus 520 ~c~~L~~i~ 528 (532)
++. |+.+.
T Consensus 172 ~N~-l~~l~ 179 (361)
T 2xot_A 172 SNK-LKKLP 179 (361)
T ss_dssp SSC-CCCCC
T ss_pred CCC-CCccC
Confidence 874 55543
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.34 E-value=3.4e-12 Score=129.29 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=41.2
Q ss_pred hhHHhhhhcccccCCch-hhhccccccEEEeccccccC-ccc-ccccccccEEeecccccccc------ccCCcceEEec
Q 048213 370 ARVVIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD-TSV-LGELKILEILRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 370 ~~~~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~-~~~-i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
..+.+++.++.+..+|+ .++.+++|++|++++|.+.. +.. +.++++|++|++++|.+..+ .+++|++|+++
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 33455555555555433 25556666666666665555 222 45566666666666655544 34566666666
Q ss_pred cccc
Q 048213 441 GLRA 444 (532)
Q Consensus 441 ~~~~ 444 (532)
+|.+
T Consensus 174 ~n~l 177 (390)
T 3o6n_A 174 SNRL 177 (390)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 6543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.34 E-value=1.8e-12 Score=134.07 Aligned_cols=147 Identities=20% Similarity=0.230 Sum_probs=76.7
Q ss_pred HHhhhhcccccCCchh-hhccccccEEEeccccccC--cccccccccccEEeeccc-ccccc------ccCCcceEEecc
Q 048213 372 VVIDLTYMNLLSLPSS-LGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVN-ELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~-~l~~~------~l~~Lr~L~l~~ 441 (532)
+.+++.+|.+..+|.. +..+++|++|++++|.+.. ...+.++++|++|++++| .+..+ .+++|++|++++
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 3344444444443332 3444444444444444433 113444444444444442 22222 345556666665
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
|++ ... ..+..+++|++|+|++|.++.+++..+ .++++|+.|+|++| .+..+++..+ +.+++|++|+|++|
T Consensus 206 n~l--~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 206 CNI--KDM-PNLTPLVGLEELEMSGNHFPEIRPGSF----HGLSSLKKLWVMNS-QVSLIERNAF-DGLASLVELNLAHN 276 (452)
T ss_dssp SCC--SSC-CCCTTCTTCCEEECTTSCCSEECGGGG----TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS
T ss_pred Ccc--ccc-ccccccccccEEECcCCcCcccCcccc----cCccCCCEEEeCCC-cCceECHHHh-cCCCCCCEEECCCC
Confidence 544 222 235566666666666666666543331 46777777777764 3666645555 67788888888776
Q ss_pred Ccccccc
Q 048213 522 PVLKEII 528 (532)
Q Consensus 522 ~~L~~i~ 528 (532)
.|+.+.
T Consensus 277 -~l~~~~ 282 (452)
T 3zyi_A 277 -NLSSLP 282 (452)
T ss_dssp -CCSCCC
T ss_pred -cCCccC
Confidence 344443
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=3e-12 Score=137.54 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=75.7
Q ss_pred hhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecccccc
Q 048213 374 IDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRAS 445 (532)
Q Consensus 374 l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~ 445 (532)
++..++.++.+|..+. +++++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|+|++|.+
T Consensus 16 ~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l- 92 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI- 92 (606)
T ss_dssp EECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-
T ss_pred eEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc-
Confidence 3444555555555443 456666666666555 22455666666666666655544 445666666666654
Q ss_pred CCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCC--ccchhhhhhcCCCccEEEeecC
Q 048213 446 APNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLT--CLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 446 ~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~--~l~p~~~~~~L~~L~~L~l~~c 521 (532)
....|..|+++++|++|+|++|.++.+|+..+ .++++|++|++++|. +. .+ |..+ +++++|++|++++|
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~l-p~~~-~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPI----GQLITLKKLNVAHNF-IHSCKL-PAYF-SNLTNLVHVDLSYN 163 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC----TTCTTCCEEECCSSC-CCCCCC-CGGG-GTCTTCCEEECCSS
T ss_pred cccChhhcCCcccCCEEEccCCcccccccccc----CCCCCCCEEeCCCCc-ccceec-hHhH-hhcCCCCEEEccCC
Confidence 33335556666666666666666655543221 455666666666543 33 23 4444 55666666666655
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.33 E-value=2.9e-12 Score=138.08 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=53.0
Q ss_pred cccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccccccCCCCCcccccCCCCCEEec
Q 048213 393 NLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCL 464 (532)
Q Consensus 393 ~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L 464 (532)
++++|++++|.++. +..+.++++|++|+|++|+++.+ .+++|++|+|++|++ ..-.+..|.++++|++|+|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEEEC
Confidence 44455555554444 12344455555555555444443 344455555554443 1112233444455555555
Q ss_pred CCcccccccccccccccccCCCccEEEeccCCCCCccc-hhhhhhcCCCccEEEeecC
Q 048213 465 SSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLF-TSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 465 ~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~-p~~~~~~L~~L~~L~l~~c 521 (532)
++|+++.+|+..+ .+|++|++|+|+++. +..++ |..+ +.+++|++|++++|
T Consensus 132 s~N~l~~l~~~~~----~~L~~L~~L~Ls~N~-l~~~~~~~~~-~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 132 VETNLASLENFPI----GHLKTLKELNVAHNL-IQSFKLPEYF-SNLTNLEHLDLSSN 183 (635)
T ss_dssp TTSCCCCSTTCCC----TTCTTCCEEECCSSC-CCCCCCCGGG-GGCTTCCEEECCSS
T ss_pred CCCcCCCCChhhh----hcCcccCeeccccCc-cccCCCchhh-ccchhhhhhcccCc
Confidence 5554444443321 234455555554422 32221 2222 44455555555443
No 65
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=1.2e-12 Score=144.49 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=124.9
Q ss_pred HHHHHhhHHhhhhcccccC------------------Cchhhh--ccccccEEEeccccccC--cccccccccccEEeec
Q 048213 365 MEVARARVVIDLTYMNLLS------------------LPSSLG--LLTNLQTLCLYYCKLQD--TSVLGELKILEILRLR 422 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~ 422 (532)
+..+...+.+++.+|.+.. +|..++ .+++|++|++++|.+.. |..+.++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4445566889999999988 999987 99999999999998766 7789999999999999
Q ss_pred ccc-ccc--c-----c-------cCCcceEEeccccccCCCCCc--ccccCCCCCEEecCCcccccccccccccccccCC
Q 048213 423 VNE-LTR--A-----G-------SSQLKHLSVRGLRASAPNPTE--SEVALPKLETVCLSSINIERIWQNQVAAMSCGIQ 485 (532)
Q Consensus 423 ~~~-l~~--~-----~-------l~~Lr~L~l~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~ 485 (532)
+|+ ++. + . +++|++|+|++|.+ ...|. .++++++|++|+|++|.++.+| .+ ..++
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~-----~~L~ 595 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHLE-AF-----GTNV 595 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCCBCC-CC-----CTTS
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcccch-hh-----cCCC
Confidence 998 775 2 2 34999999999987 37777 8999999999999999988888 44 6788
Q ss_pred CccEEEeccCCCCCccchhhhhhcCCC-ccEEEeecCCcccccc
Q 048213 486 NLKRLILFNCWNLTCLFTSSIISSFVG-LQCLEICECPVLKEII 528 (532)
Q Consensus 486 ~L~~L~L~~c~~l~~l~p~~~~~~L~~-L~~L~l~~c~~L~~i~ 528 (532)
+|+.|+|++|. +..+ |..+ +.+++ |++|+|++|. ++.++
T Consensus 596 ~L~~L~Ls~N~-l~~l-p~~l-~~l~~~L~~L~Ls~N~-L~~lp 635 (876)
T 4ecn_A 596 KLTDLKLDYNQ-IEEI-PEDF-CAFTDQVEGLGFSHNK-LKYIP 635 (876)
T ss_dssp EESEEECCSSC-CSCC-CTTS-CEECTTCCEEECCSSC-CCSCC
T ss_pred cceEEECcCCc-cccc-hHHH-hhccccCCEEECcCCC-CCcCc
Confidence 99999998755 6677 6666 68888 9999988875 44443
No 66
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.33 E-value=2.2e-12 Score=130.74 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=45.0
Q ss_pred CCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCC
Q 048213 432 SQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFV 511 (532)
Q Consensus 432 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~ 511 (532)
++|++|++++|.. ....+..+..+++|++|+|++|.++.+|... ..+++|++|+|++| .+..+ |..+ +.++
T Consensus 248 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~l~~L~~L~L~~n-~l~~~-~~~~-~~l~ 318 (390)
T 3o6n_A 248 PGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLVALNLYG-----QPIPTLKVLDLSHN-HLLHV-ERNQ-PQFD 318 (390)
T ss_dssp TTCSEEECCSSCC-CEEESGGGTTCSSCCEEECCSSCCCEEECSS-----SCCTTCCEEECCSS-CCCCC-GGGH-HHHT
T ss_pred CCccEEECCCCcC-CCcChhHccccccCCEEECCCCcCcccCccc-----CCCCCCCEEECCCC-cceec-Cccc-cccC
Confidence 3444444444443 2223444555555666666665555554443 45566777777664 35566 4444 5666
Q ss_pred CccEEEeecCC
Q 048213 512 GLQCLEICECP 522 (532)
Q Consensus 512 ~L~~L~l~~c~ 522 (532)
+|++|++++|+
T Consensus 319 ~L~~L~L~~N~ 329 (390)
T 3o6n_A 319 RLENLYLDHNS 329 (390)
T ss_dssp TCSEEECCSSC
T ss_pred cCCEEECCCCc
Confidence 77777766654
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.33 E-value=2.3e-12 Score=135.84 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=117.0
Q ss_pred hhHHhhhhcccccC-CchhhhccccccEEEeccccccC----cccccccccccEEeeccccccc-c------ccCCcceE
Q 048213 370 ARVVIDLTYMNLLS-LPSSLGLLTNLQTLCLYYCKLQD----TSVLGELKILEILRLRVNELTR-A------GSSQLKHL 437 (532)
Q Consensus 370 ~~~~l~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~----~~~i~~l~~L~~L~l~~~~l~~-~------~l~~Lr~L 437 (532)
..+.+++.+|.+.. +|..++.+++|++|++++|.+.. +..+.++++|++|++++|.+.. + .+++|++|
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 34578888888877 67788999999999999999886 2458889999999999998887 4 56789999
Q ss_pred EeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEE
Q 048213 438 SVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLE 517 (532)
Q Consensus 438 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~ 517 (532)
++++|.. ....+..+. ++|++|+|++|.++.+|..+ +.+++|++|+|++| .++.+|+..+ ..+++|++|+
T Consensus 405 ~Ls~N~l-~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~-----~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~L~~L~ 474 (520)
T 2z7x_B 405 NMSSNIL-TDTIFRCLP--PRIKVLDLHSNKIKSIPKQV-----VKLEALQELNVASN-QLKSVPDGIF-DRLTSLQKIW 474 (520)
T ss_dssp ECCSSCC-CGGGGGSCC--TTCCEEECCSSCCCCCCGGG-----GGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEE
T ss_pred ECcCCCC-Ccchhhhhc--ccCCEEECCCCcccccchhh-----hcCCCCCEEECCCC-cCCccCHHHh-ccCCcccEEE
Confidence 9999976 333333332 68999999999999999887 78899999999986 5888944335 7899999999
Q ss_pred eecCCc
Q 048213 518 ICECPV 523 (532)
Q Consensus 518 l~~c~~ 523 (532)
+++++-
T Consensus 475 l~~N~~ 480 (520)
T 2z7x_B 475 LHTNPW 480 (520)
T ss_dssp CCSSCB
T ss_pred CcCCCC
Confidence 999873
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.33 E-value=2e-12 Score=127.22 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=87.0
Q ss_pred hHHhhhhcccccCCc-hhhhccccccEEEeccccccCcccccccccccEEeecccccccc-ccCCcceEEecccccc---
Q 048213 371 RVVIDLTYMNLLSLP-SSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA-GSSQLKHLSVRGLRAS--- 445 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~-~l~~Lr~L~l~~~~~~--- 445 (532)
.+.+++.+|.+..++ ..++.+++|++|++++|.+.....+..+++|++|++++|.++.+ ..++|++|++++|.+.
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~ 115 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC
Confidence 457788888888765 46888888999999888887744588888888888888877765 3445555555554330
Q ss_pred -----------------CCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhh
Q 048213 446 -----------------APNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIIS 508 (532)
Q Consensus 446 -----------------~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~ 508 (532)
....+..+..+++|++|+|++|.++.++...+. ..+++|++|+|++|. ++.+ +.. .
T Consensus 116 ~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~~l~~L~~L~L~~N~-l~~~-~~~--~ 188 (317)
T 3o53_A 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA---ASSDTLEHLNLQYNF-IYDV-KGQ--V 188 (317)
T ss_dssp ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG---GGTTTCCEEECTTSC-CCEE-ECC--C
T ss_pred ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh---hccCcCCEEECCCCc-Cccc-ccc--c
Confidence 222233445555555555555555544332210 134556666666533 4555 222 2
Q ss_pred cCCCccEEEeecC
Q 048213 509 SFVGLQCLEICEC 521 (532)
Q Consensus 509 ~L~~L~~L~l~~c 521 (532)
.+++|++|++++|
T Consensus 189 ~l~~L~~L~Ls~N 201 (317)
T 3o53_A 189 VFAKLKTLDLSSN 201 (317)
T ss_dssp CCTTCCEEECCSS
T ss_pred ccccCCEEECCCC
Confidence 3566666666655
No 69
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.33 E-value=3.9e-11 Score=112.68 Aligned_cols=179 Identities=12% Similarity=0.127 Sum_probs=118.5
Q ss_pred ccccccchHHHHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHhhccCCC--------------------CEEEEe
Q 048213 105 YEAFESRMSTFNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKAENEKLF--------------------DRVIFV 163 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--------------------~~~~~~ 163 (532)
...++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+ +.....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 101 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEE
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEec
Confidence 4569999999999999987543 4588999999999999999999876432111 111111
Q ss_pred ccCchhhHHHHHHHHh-------ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChHHh-hhcCCCCceE
Q 048213 164 EESESGRARSLCNRLK-------KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLDVL-SRKMDSQQDF 233 (532)
Q Consensus 164 ~~~~~~~~~~l~~~l~-------~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~~~~~~~~ 233 (532)
. ........+.+.+. .+++.+||+||++.. ..++.+...+.....+..+|+||+..... .........+
T Consensus 102 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i 180 (250)
T 1njg_A 102 A-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 180 (250)
T ss_dssp T-TCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred C-cccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhc
Confidence 1 11122223333332 246799999999764 34555544443345578888888765422 1112224689
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 048213 234 WVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVARAL 285 (532)
Q Consensus 234 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 285 (532)
.+.+++.++..+++...+.... ..-.++....|++.|+|.|..+..+...+
T Consensus 181 ~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 181 HLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp ECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999998764211 12225668899999999999888776543
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.32 E-value=1e-11 Score=128.41 Aligned_cols=142 Identities=16% Similarity=0.075 Sum_probs=109.7
Q ss_pred ccHHHHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc---ccCCcceEEe
Q 048213 363 KRMEVARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA---GSSQLKHLSV 439 (532)
Q Consensus 363 ~~~~~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~---~l~~Lr~L~l 439 (532)
.++..+...+.+++.++.+..+| .++.+++|++|++++|.+...+ ++.+++|++|++++|.+..+ .+++|++|++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L 113 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNC 113 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceeecCCCCcCCEEEC
Confidence 46777788889999999999887 6899999999999999988865 88999999999999988877 6788999999
Q ss_pred ccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEee
Q 048213 440 RGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEIC 519 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~ 519 (532)
++|.+ ...+ ++.+++|++|++++|.++.+| + ..+++|++|++++|..++.+ + + +.+++|++|+++
T Consensus 114 ~~N~l--~~l~--~~~l~~L~~L~l~~N~l~~l~--l-----~~l~~L~~L~l~~n~~~~~~-~--~-~~l~~L~~L~ls 178 (457)
T 3bz5_A 114 DTNKL--TKLD--VSQNPLLTYLNCARNTLTEID--V-----SHNTQLTELDCHLNKKITKL-D--V-TPQTQLTTLDCS 178 (457)
T ss_dssp CSSCC--SCCC--CTTCTTCCEEECTTSCCSCCC--C-----TTCTTCCEEECTTCSCCCCC-C--C-TTCTTCCEEECC
T ss_pred CCCcC--Ceec--CCCCCcCCEEECCCCccceec--c-----ccCCcCCEEECCCCCccccc-c--c-ccCCcCCEEECC
Confidence 99976 3333 788899999999999888764 2 44566666666666555544 2 2 445555555555
Q ss_pred cC
Q 048213 520 EC 521 (532)
Q Consensus 520 ~c 521 (532)
+|
T Consensus 179 ~n 180 (457)
T 3bz5_A 179 FN 180 (457)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=2.4e-12 Score=134.32 Aligned_cols=144 Identities=19% Similarity=0.163 Sum_probs=89.1
Q ss_pred hhHHhhhhcccccCCc-hhhhccccccEEEeccccccCcccccccccccEEeecccccccc-ccCCcceEEecccccc--
Q 048213 370 ARVVIDLTYMNLLSLP-SSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA-GSSQLKHLSVRGLRAS-- 445 (532)
Q Consensus 370 ~~~~l~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~-~l~~Lr~L~l~~~~~~-- 445 (532)
..+.+++.+|.+..++ ..|+.+++|++|++++|.+.+...+..+++|++|++++|.++.+ ..++|++|++++|.+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~ 114 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC
Confidence 3467888899888875 56899999999999999888744488889999999998887766 3345555555554330
Q ss_pred ------------------CCCCCcccccCCCCCEEecCCcccccccccccccccc-cCCCccEEEeccCCCCCccchhhh
Q 048213 446 ------------------APNPTESEVALPKLETVCLSSINIERIWQNQVAAMSC-GIQNLKRLILFNCWNLTCLFTSSI 506 (532)
Q Consensus 446 ------------------~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~-~L~~L~~L~L~~c~~l~~l~p~~~ 506 (532)
....+..++++++|++|+|++|.++.+++..+ + .+++|++|+|++|. +..+ |..
T Consensus 115 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~~l~~L~~L~Ls~N~-l~~~-~~~- 187 (487)
T 3oja_A 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTLEHLNLQYNF-IYDV-KGQ- 187 (487)
T ss_dssp EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG----GGGTTTCCEEECTTSC-CCEE-ECC-
T ss_pred CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH----hhhCCcccEEecCCCc-cccc-ccc-
Confidence 22223344555555555555555554322211 2 35566666665533 4444 221
Q ss_pred hhcCCCccEEEeecC
Q 048213 507 ISSFVGLQCLEICEC 521 (532)
Q Consensus 507 ~~~L~~L~~L~l~~c 521 (532)
..+++|++|+|++|
T Consensus 188 -~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 188 -VVFAKLKTLDLSSN 201 (487)
T ss_dssp -CCCTTCCEEECCSS
T ss_pred -ccCCCCCEEECCCC
Confidence 24566666666655
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.32 E-value=4.8e-12 Score=125.14 Aligned_cols=144 Identities=16% Similarity=0.158 Sum_probs=94.2
Q ss_pred hHHhhhhcccccCCchh-hhccccccEEEeccccccC----cccccccccccEEeecccccccc---ccCCcceEEeccc
Q 048213 371 RVVIDLTYMNLLSLPSS-LGLLTNLQTLCLYYCKLQD----TSVLGELKILEILRLRVNELTRA---GSSQLKHLSVRGL 442 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~----~~~i~~l~~L~~L~l~~~~l~~~---~l~~Lr~L~l~~~ 442 (532)
.+.+++.++.+..++.. +..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ -.++|++|++++|
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n 202 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCC
Confidence 34566667777666543 6777777777777777643 44567777777777777776665 2356777777777
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
.+ ....+..+..+++|++|+|++|.++.++...+ ..+++|++|+|++| .+..+ |..+ ..+++|++|++++|+
T Consensus 203 ~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~N-~l~~l-p~~l-~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 203 KI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSL----ANTPHLRELHLNNN-KLVKV-PGGL-ADHKYIQVVYLHNNN 274 (330)
T ss_dssp CC-CEECTGGGTTCTTCCEEECCSSCCCEECTTTG----GGSTTCCEEECCSS-CCSSC-CTTT-TTCSSCCEEECCSSC
T ss_pred cC-CccCHHHhcCCCCCCEEECCCCcCceeChhhc----cCCCCCCEEECCCC-cCccC-Chhh-ccCCCcCEEECCCCc
Confidence 65 33345566677777777777777766655321 45677777777764 36666 5555 567777777777664
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.32 E-value=2.4e-12 Score=136.57 Aligned_cols=147 Identities=22% Similarity=0.238 Sum_probs=108.9
Q ss_pred hhHHhhhhcccccCC-chhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEec
Q 048213 370 ARVVIDLTYMNLLSL-PSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 370 ~~~~l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
..+.+++.++.+..+ |..++.+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 346778888888776 4568888888888888888777 35688888888888888887776 57788888888
Q ss_pred cccccCCCCCcccccCCCCCEEecCCcc-cccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEee
Q 048213 441 GLRASAPNPTESEVALPKLETVCLSSIN-IERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEIC 519 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~ 519 (532)
+|.+.....+..++++++|++|++++|. +..+|...+ .++++|++|++++|. +....|..+ +.+++|++|+++
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~l~ 180 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF----AGLTSLNELEIKALS-LRNYQSQSL-KSIRDIHHLTLH 180 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT----TTCCEEEEEEEEETT-CCEECTTTT-TTCSEEEEEEEE
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhh----hcccccCeeeccCCc-ccccChhhh-hccccCceEecc
Confidence 8876212345677888888888888885 666664321 567888888888765 555436666 788888888887
Q ss_pred cCC
Q 048213 520 ECP 522 (532)
Q Consensus 520 ~c~ 522 (532)
++.
T Consensus 181 ~n~ 183 (549)
T 2z81_A 181 LSE 183 (549)
T ss_dssp CSB
T ss_pred cCc
Confidence 654
No 74
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.32 E-value=8.3e-12 Score=124.24 Aligned_cols=137 Identities=22% Similarity=0.245 Sum_probs=91.6
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccc-cccc----ccCCcceEEeccccccC
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNE-LTRA----GSSQLKHLSVRGLRASA 446 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~-l~~~----~l~~Lr~L~l~~~~~~~ 446 (532)
+.+++.+|.+..+| .+..+++|++|++++|.+...+.+..+++|++|++++|. +..+ .+++|++|++++|..
T Consensus 91 ~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-- 167 (347)
T 4fmz_A 91 TNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-- 167 (347)
T ss_dssp CEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC--
T ss_pred CEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc--
Confidence 44445555444443 245555555555555555553335555555555555552 2211 567788888888765
Q ss_pred CCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 447 PNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 447 ~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
...+ .+..+++|++|++++|.+..++. + ..+++|++|++++|. +..+++ + +.+++|++|++++|.
T Consensus 168 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~-----~~l~~L~~L~l~~n~-l~~~~~--~-~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 168 KDVT-PIANLTDLYSLSLNYNQIEDISP-L-----ASLTSLHYFTAYVNQ-ITDITP--V-ANMTRLNSLKIGNNK 232 (347)
T ss_dssp CCCG-GGGGCTTCSEEECTTSCCCCCGG-G-----GGCTTCCEEECCSSC-CCCCGG--G-GGCTTCCEEECCSSC
T ss_pred CCch-hhccCCCCCEEEccCCccccccc-c-----cCCCccceeecccCC-CCCCch--h-hcCCcCCEEEccCCc
Confidence 2332 38899999999999999988876 3 578999999999854 777734 4 789999999999985
No 75
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.31 E-value=3.4e-11 Score=122.82 Aligned_cols=221 Identities=14% Similarity=0.057 Sum_probs=130.8
Q ss_pred ccccccchHHHHHHHHHh-c----C--CCceEEEE--EccCCCchHHHHHHHHHHhhccC-----CCCEEEEec---c--
Q 048213 105 YEAFESRMSTFNDILNAL-K----S--PDVNMLGI--YGMGGIRKTTPAKEVAIKAENEK-----LFDRVIFVE---E-- 165 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l-~----~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~~-----~F~~~~~~~---~-- 165 (532)
+..|+||+.+++++.+++ . . ...+.+.| +|++|+||||||+.+++...... .|....... .
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4 2 34567777 99999999999999998754320 122222110 0
Q ss_pred --------------------CchhhHHHHHHHHh-ccCcEEEEEcCCCCccc--------cccccccc---CCCC--CCe
Q 048213 166 --------------------SESGRARSLCNRLK-KEKMILVILDNIWENLD--------FHAVGIPH---GDDH--KGC 211 (532)
Q Consensus 166 --------------------~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~--------~~~l~~~~---~~~~--~gs 211 (532)
+.......+.+.+. .+++++||+||++.... +..+...+ +..+ ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 01122334444443 25789999999987432 22221111 1112 445
Q ss_pred EEEEeecChHHhh--------hcCCCCceEEccCCCHHHHHHHHHHHh---CCCCCCcchHHHHHHHHHHcC------Cc
Q 048213 212 KVLLTARSLDVLS--------RKMDSQQDFWVGVLKEDEAWSLFKKMA---GDYIEGSEFKWVAKDVAKKCA------GL 274 (532)
Q Consensus 212 ~ilvTtr~~~v~~--------~~~~~~~~~~l~~L~~~~~~~Lf~~~~---~~~~~~~~~~~~~~~i~~~c~------gl 274 (532)
.+|+||+...+.. ........+.+.+++.++.+++|...+ +.. .....+....|++.|+ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCc
Confidence 6888887554321 001112239999999999999997654 221 1223567889999999 99
Q ss_pred hHHHHHHHHHHc------cC---ChHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhcCCCCCchHHHHHHHHhhh
Q 048213 275 PVSIVTVARALR------NK---RLFDWKDALEQLRWPSSTNFKDIQPTAYKAIELSYVKLDGDELKNIFLLIGYT 341 (532)
Q Consensus 275 PLai~~~~~~l~------~~---~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~f~~lalF 341 (532)
|..+..+..... +. +.+.+..++..... ...+.-++..||++ .+.++..++.+
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l 320 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEA 320 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHH
Confidence 976555443211 11 33444433332210 12344467789988 88888888865
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=126.86 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=112.6
Q ss_pred hHHhhhhcccccCCc-hhhhccccccEEEeccccccC------cccccccccccEEeecccccccc---------ccCCc
Q 048213 371 RVVIDLTYMNLLSLP-SSLGLLTNLQTLCLYYCKLQD------TSVLGELKILEILRLRVNELTRA---------GSSQL 434 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~l~~~---------~l~~L 434 (532)
.+.+++.+|.+..++ ..++.+++|++|++++|.+.. ...+.++++|++|++++|+++.+ .+++|
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L 226 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQP 226 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCC
T ss_pred CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCC
Confidence 457888899888765 568899999999999998643 22346889999999999998755 45899
Q ss_pred ceEEeccccccCCCCCcccccC---CCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCC
Q 048213 435 KHLSVRGLRASAPNPTESEVAL---PKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFV 511 (532)
Q Consensus 435 r~L~l~~~~~~~~~~~~~~~~l---~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~ 511 (532)
++|+|++|++ ....|..+..+ ++|++|+|++|.++.+|..+ + ++|++|+|++| .+..+ |. + ..++
T Consensus 227 ~~L~Ls~N~l-~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-----~--~~L~~L~Ls~N-~l~~~-~~-~-~~l~ 294 (310)
T 4glp_A 227 HSLDLSHNSL-RATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-----P--AKLRVLDLSSN-RLNRA-PQ-P-DELP 294 (310)
T ss_dssp SSEECTTSCC-CCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-----C--SCCSCEECCSC-CCCSC-CC-T-TSCC
T ss_pred CEEECCCCCC-CccchhhHHhccCcCcCCEEECCCCCCCchhhhh-----c--CCCCEEECCCC-cCCCC-ch-h-hhCC
Confidence 9999999987 34445556555 79999999999999998876 4 79999999975 57887 44 3 6899
Q ss_pred CccEEEeecCC
Q 048213 512 GLQCLEICECP 522 (532)
Q Consensus 512 ~L~~L~l~~c~ 522 (532)
+|++|+|++++
T Consensus 295 ~L~~L~L~~N~ 305 (310)
T 4glp_A 295 EVDNLTLDGNP 305 (310)
T ss_dssp CCSCEECSSTT
T ss_pred CccEEECcCCC
Confidence 99999999886
No 77
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.30 E-value=2.3e-12 Score=138.48 Aligned_cols=116 Identities=23% Similarity=0.196 Sum_probs=55.3
Q ss_pred HhhhhcccccCCch-hhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecccc
Q 048213 373 VIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLR 443 (532)
Q Consensus 373 ~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~ 443 (532)
.+++.++.+..+++ .|..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|++++|.
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 115 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc
Confidence 44555555544433 35555555555555555444 23345555555555555544443 34455555555554
Q ss_pred ccCCCCCcccccCCCCCEEecCCccccc--ccccccccccccCCCccEEEecc
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIER--IWQNQVAAMSCGIQNLKRLILFN 494 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~~~~~~L~~L~~L~L~~ 494 (532)
. ....+..++++++|++|++++|.++. +|..+ .++++|++|++++
T Consensus 116 l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-----~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 116 L-ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-----SNLTNLVHVDLSY 162 (606)
T ss_dssp C-CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-----GTCTTCCEEECCS
T ss_pred c-ccccccccCCCCCCCEEeCCCCcccceechHhH-----hhcCCCCEEEccC
Confidence 4 22222344555555555555554442 33333 3445555555554
No 78
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=3.9e-12 Score=118.05 Aligned_cols=121 Identities=16% Similarity=0.172 Sum_probs=105.9
Q ss_pred hHHhhhhcccccCCch-hhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 371 RVVIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
.+.+++.++.+..+|. .|..+++|++|++++|.+.. +..+.++++|++|+|++|.++.+ .+++|++|+|++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 3578899999988876 68999999999999999987 56899999999999999999887 578999999999
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCC
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
|.+ ....+..|..+++|++|+|++|.|+.+|...+ ..+++|++|+|++++
T Consensus 114 N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 114 NKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF----SPLRAIQTMHLAQNP 163 (220)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT----TTCTTCCEEECCSSC
T ss_pred CCC-CEeCHHHcCCCCCCCEEECCCCcCCEECHHHH----hCCCCCCEEEeCCCC
Confidence 987 55557789999999999999999999987652 468999999999854
No 79
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.30 E-value=3.9e-12 Score=136.64 Aligned_cols=143 Identities=22% Similarity=0.201 Sum_probs=108.5
Q ss_pred HHhhhhcccccCC-chhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccc
Q 048213 372 VVIDLTYMNLLSL-PSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGL 442 (532)
Q Consensus 372 ~~l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~ 442 (532)
+.++++++.+..+ |..|+.+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|++++|
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 5778888888876 5568888889999998888776 55688888899999988887665 5788888888888
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccccccc-cccccccccCCCccEEEeccCCCCCccchhhhhhcCCCcc--EEEee
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIERIWQ-NQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQ--CLEIC 519 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~--~L~l~ 519 (532)
.+ ....+..++++++|++|++++|.++.++. .. ..+++|++|+++++ .+..++|..+ +.+++|+ .|+++
T Consensus 116 ~i-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 116 GI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-----FPTEKLKVLDFQNN-AIHYLSKEDM-SSLQQATNLSLNLN 187 (606)
T ss_dssp CC-SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT-----CCCTTCCEEECCSS-CCCEECHHHH-HTTTTCCSEEEECT
T ss_pred Cc-ccCCcchhccCCcccEEECCCCcccccCcccc-----cCCcccCEEEcccC-cccccChhhh-hhhcccceeEEecC
Confidence 76 33335667888888888888888877632 22 34788888888874 4666655555 7788888 77777
Q ss_pred cCC
Q 048213 520 ECP 522 (532)
Q Consensus 520 ~c~ 522 (532)
+|.
T Consensus 188 ~n~ 190 (606)
T 3t6q_A 188 GND 190 (606)
T ss_dssp TCC
T ss_pred CCc
Confidence 764
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.29 E-value=3.3e-12 Score=125.58 Aligned_cols=140 Identities=17% Similarity=0.141 Sum_probs=97.3
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc-------ccCCcceEEeccc
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA-------GSSQLKHLSVRGL 442 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~-------~l~~Lr~L~l~~~ 442 (532)
+.+++.+|.+..++.. .+++|++|++++|.+.. +..+..+++|++|++++|.+..+ .+++|++|++++|
T Consensus 102 ~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 3455555555554432 35677788888887777 33567788888888888877765 3577888888888
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
.+ ... .....+++|++|+|++|.++.+|+.+ ..+++|++|+|++| .+..+ |..+ +.+++|++|++++|+
T Consensus 180 ~l--~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~-----~~l~~L~~L~L~~N-~l~~l-~~~~-~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 180 FI--YDV-KGQVVFAKLKTLDLSSNKLAFMGPEF-----QSAAGVTWISLRNN-KLVLI-EKAL-RFSQNLEHFDLRGNG 248 (317)
T ss_dssp CC--CEE-ECCCCCTTCCEEECCSSCCCEECGGG-----GGGTTCSEEECTTS-CCCEE-CTTC-CCCTTCCEEECTTCC
T ss_pred cC--ccc-ccccccccCCEEECCCCcCCcchhhh-----cccCcccEEECcCC-cccch-hhHh-hcCCCCCEEEccCCC
Confidence 65 222 22334778888888888888777765 56788888888874 47777 5555 678888888888776
Q ss_pred cc
Q 048213 523 VL 524 (532)
Q Consensus 523 ~L 524 (532)
-.
T Consensus 249 ~~ 250 (317)
T 3o53_A 249 FH 250 (317)
T ss_dssp CB
T ss_pred cc
Confidence 43
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.29 E-value=4.2e-12 Score=136.83 Aligned_cols=136 Identities=21% Similarity=0.222 Sum_probs=111.7
Q ss_pred hHHhhhhcccccCCch-hhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 371 RVVIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
.+.+++++|.++.+|+ .|..+++|++|++++|.+.. +..+.++++|++|+|++|+++.+ ++++|++|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 3689999999999875 69999999999999999988 34689999999999999998877 678999999999
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccc--cccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCcc
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERI--WQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQ 514 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l--p~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~ 514 (532)
|++ ..-.+..|+++++|++|+|++|.++.+ |..+ ..+++|++|+|+++ .+..+++..+ +.+.++.
T Consensus 134 N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~l-~~L~~l~ 200 (635)
T 4g8a_A 134 TNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSN-KIQSIYCTDL-RVLHQMP 200 (635)
T ss_dssp SCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-----GGCTTCCEEECCSS-CCCEECGGGG-HHHHTCT
T ss_pred CcC-CCCChhhhhcCcccCeeccccCccccCCCchhh-----ccchhhhhhcccCc-cccccccccc-cchhhhh
Confidence 987 344445789999999999999988754 4444 67899999999985 4777756555 4544443
No 82
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.28 E-value=4e-12 Score=131.47 Aligned_cols=126 Identities=25% Similarity=0.227 Sum_probs=105.0
Q ss_pred ccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccccccCCCCCcccccCCCCCEEe
Q 048213 392 TNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRASAPNPTESEVALPKLETVC 463 (532)
Q Consensus 392 ~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 463 (532)
++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|++++|.. ....+..+.++++|++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEE
Confidence 689999999998887 56789999999999999998876 678999999999977 444567889999999999
Q ss_pred cCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCcc
Q 048213 464 LSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPVL 524 (532)
Q Consensus 464 L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L 524 (532)
|++|.++.+++..+ ..+++|++|+|++| .++.+++..+ +.+++|++|+|++|+--
T Consensus 354 Ls~N~l~~~~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 354 LSYNHIRALGDQSF----LGLPNLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCSSCCCEECTTTT----TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred CCCCcccccChhhc----cccccccEEECCCC-ccccCCHhHh-ccCCcccEEEccCCCcc
Confidence 99999988744331 57899999999984 5888855544 78999999999987643
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=3.4e-12 Score=117.32 Aligned_cols=121 Identities=26% Similarity=0.261 Sum_probs=102.4
Q ss_pred hHHhhhhcccccCCchh-hhccccccEEEeccccccCc--ccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 371 RVVIDLTYMNLLSLPSS-LGLLTNLQTLCLYYCKLQDT--SVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
.+.+++.++.+..+|.. ++.+++|++|++++|.+... ..+..+++|++|++++|.+..+ .+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 35789999999888765 78999999999999999883 3478999999999999998876 578999999999
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCC
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
|.+ ....+..+..+++|++|+|++|.++.+|...+ ..+++|++|+|++++
T Consensus 110 N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 110 NQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF----DRLTSLQYIWLHDNP 159 (208)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT----TTCTTCCEEECCSCC
T ss_pred CcC-cccCHhHhccCCcCCEEECCCCccceeCHHHh----ccCCCccEEEecCCC
Confidence 987 33344457899999999999999998887642 468999999999864
No 84
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=2.4e-12 Score=111.57 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=102.4
Q ss_pred hHHhhhhccccc--CCchhhhccccccEEEeccccccCcccccccccccEEeeccccccc-c-----ccCCcceEEeccc
Q 048213 371 RVVIDLTYMNLL--SLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTR-A-----GSSQLKHLSVRGL 442 (532)
Q Consensus 371 ~~~l~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~-~-----~l~~Lr~L~l~~~ 442 (532)
.+.+++.++.+. .+|..++.+++|++|++++|.+.....+.++++|++|++++|.+.. + .+++|++|++++|
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 367889999998 7898889999999999999999888889999999999999999988 4 5899999999999
Q ss_pred cccCCCC--CcccccCCCCCEEecCCcccccccc---cccccccccCCCccEEEecc
Q 048213 443 RASAPNP--TESEVALPKLETVCLSSINIERIWQ---NQVAAMSCGIQNLKRLILFN 494 (532)
Q Consensus 443 ~~~~~~~--~~~~~~l~~L~~L~L~~~~l~~lp~---~~~~~~~~~L~~L~~L~L~~ 494 (532)
.+ ... +..+..+++|++|++++|.++.+|. ..+ ..+++|+.|++++
T Consensus 99 ~i--~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~----~~l~~L~~L~l~d 149 (149)
T 2je0_A 99 KI--KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF----KLLPQLTYLDGYD 149 (149)
T ss_dssp CC--CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHH----HHCTTCCEETTBC
T ss_pred cC--CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHH----HHCCCcccccCCC
Confidence 86 333 3778999999999999999998876 221 5689999998864
No 85
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.28 E-value=1.5e-12 Score=140.46 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=110.0
Q ss_pred HHHHHhhHHhhhhcccccC------------------Cchhhh--ccccccEEEeccccccC--cccccccccccEEeec
Q 048213 365 MEVARARVVIDLTYMNLLS------------------LPSSLG--LLTNLQTLCLYYCKLQD--TSVLGELKILEILRLR 422 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~ 422 (532)
+..+...+++++.+|.+.. +|..++ .+++|++|++++|.+.. |..++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 3344456788999999988 899988 99999999999998766 6789999999999999
Q ss_pred ccc-ccc--c-----cc------CCcceEEeccccccCCCCCc--ccccCCCCCEEecCCcccc-cccccccccccccCC
Q 048213 423 VNE-LTR--A-----GS------SQLKHLSVRGLRASAPNPTE--SEVALPKLETVCLSSINIE-RIWQNQVAAMSCGIQ 485 (532)
Q Consensus 423 ~~~-l~~--~-----~l------~~Lr~L~l~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~l~-~lp~~~~~~~~~~L~ 485 (532)
+|+ ++. + .+ ++|++|++++|++ ...|. .++++++|++|++++|.++ .+| .+ ..++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l--~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-----~~l~ 353 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL--KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF-----GSEI 353 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC--SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC-----EEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcC--CccCchhhhccCCCCCEEeCcCCcCccchh-hh-----CCCC
Confidence 998 775 2 33 8899999999987 37777 7888889999999888887 776 43 4455
Q ss_pred CccEEEeccCCCCCccchhhhhhcCCC-ccEEEeecCC
Q 048213 486 NLKRLILFNCWNLTCLFTSSIISSFVG-LQCLEICECP 522 (532)
Q Consensus 486 ~L~~L~L~~c~~l~~l~p~~~~~~L~~-L~~L~l~~c~ 522 (532)
+|++|+|++|. +..+ |..+ +.+++ |++|++++|.
T Consensus 354 ~L~~L~L~~N~-l~~l-p~~l-~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 354 KLASLNLAYNQ-ITEI-PANF-CGFTEQVENLSFAHNK 388 (636)
T ss_dssp EESEEECCSSE-EEEC-CTTS-EEECTTCCEEECCSSC
T ss_pred CCCEEECCCCc-cccc-cHhh-hhhcccCcEEEccCCc
Confidence 66666666533 4455 4444 45555 6666665554
No 86
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=7.8e-12 Score=116.77 Aligned_cols=121 Identities=22% Similarity=0.221 Sum_probs=106.0
Q ss_pred hhHHhhhhcccccCC-chhhhccccccEEEeccccccCc--ccccccccccEEeecccccccc------ccCCcceEEec
Q 048213 370 ARVVIDLTYMNLLSL-PSSLGLLTNLQTLCLYYCKLQDT--SVLGELKILEILRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 370 ~~~~l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
..+.+++.+|.+..+ |..+..+++|++|++++|.+..+ ..+..+++|++|++++|+++.+ .+++|++|+|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 346789999999887 56699999999999999999883 4578999999999999998877 57899999999
Q ss_pred cccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCC
Q 048213 441 GLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
+|++ ...|..+..+++|++|+|++|.|+.+|...+ ..+++|+.|+|++++
T Consensus 121 ~N~l--~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 121 CNKL--TELPRGIERLTHLTHLALDQNQLKSIPHGAF----DRLSSLTHAYLFGNP 170 (229)
T ss_dssp SSCC--CSCCTTGGGCTTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECTTSC
T ss_pred CCcc--cccCcccccCCCCCEEECCCCcCCccCHHHH----hCCCCCCEEEeeCCC
Confidence 9987 5788889999999999999999999887652 468999999999865
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.28 E-value=3.2e-13 Score=133.90 Aligned_cols=134 Identities=19% Similarity=0.135 Sum_probs=76.3
Q ss_pred CchhhhccccccEEEeccccccC--cccccccccccEEeeccc-cccc--c-----ccCCcceEEeccc-cccCCC-CCc
Q 048213 384 LPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVN-ELTR--A-----GSSQLKHLSVRGL-RASAPN-PTE 451 (532)
Q Consensus 384 lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~-~l~~--~-----~l~~Lr~L~l~~~-~~~~~~-~~~ 451 (532)
+|..+..+++|++|++++|.+.+ +..+.++++|++|++++| .++. + .+++|++|++++| .. ... .+.
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l-~~~~~~~ 188 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF-TEKHVQV 188 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC-CHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc-ChHHHHH
Confidence 33444555555555555555443 344555566666666655 3442 1 4566666666666 43 111 233
Q ss_pred ccccCC-CCCEEecCCcc--c--ccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCcc
Q 048213 452 SEVALP-KLETVCLSSIN--I--ERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPVL 524 (532)
Q Consensus 452 ~~~~l~-~L~~L~L~~~~--l--~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L 524 (532)
.+..++ +|++|+|++|. + ..+|..+ ..+++|++|+|++|..++...+..+ +++++|++|++++|..+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLV-----RRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHH-----HHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTC
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHH-----hhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCC
Confidence 455666 77777777763 2 2333333 4567888888887765543324455 67788888888888644
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.28 E-value=3.1e-12 Score=136.31 Aligned_cols=147 Identities=20% Similarity=0.203 Sum_probs=109.3
Q ss_pred hhHHhhhhcccccCCchhhhccccccEEEeccccccC-c--ccccccccccEEeecccccccc------ccCCcceEEec
Q 048213 370 ARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-T--SVLGELKILEILRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 370 ~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
..+.+++.+|.+..+|..+..+++|++|++++|.+.. + ..+.++++|++|++++|.+... .+++|++|+++
T Consensus 374 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 3456677777777776667778888888888887765 2 3577888888888888876654 57788888888
Q ss_pred cccccCCCCCcccccCCCCCEEecCCccccccc-ccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEee
Q 048213 441 GLRASAPNPTESEVALPKLETVCLSSINIERIW-QNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEIC 519 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~ 519 (532)
+|.......|..+..+++|++|+|++|.++.++ ..+ ..+++|++|+|++| .+..++|..+ +.+++|++|+++
T Consensus 454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~ 526 (570)
T 2z63_A 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-----NSLSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLH 526 (570)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-----TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECC
T ss_pred CCcCccccchhhhhcccCCCEEECCCCccccCChhhh-----hcccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEec
Confidence 887611346677888888889999888888773 343 56788999999885 4777755555 788999999998
Q ss_pred cCCc
Q 048213 520 ECPV 523 (532)
Q Consensus 520 ~c~~ 523 (532)
+|+-
T Consensus 527 ~N~~ 530 (570)
T 2z63_A 527 TNPW 530 (570)
T ss_dssp SSCB
T ss_pred CCcc
Confidence 8763
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.28 E-value=8.5e-13 Score=130.80 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=112.2
Q ss_pred hHHhhhhcccccC-CchhhhccccccEEEeccc-cccC---cccccccccccEEeeccc-ccccc-------ccC-Ccce
Q 048213 371 RVVIDLTYMNLLS-LPSSLGLLTNLQTLCLYYC-KLQD---TSVLGELKILEILRLRVN-ELTRA-------GSS-QLKH 436 (532)
Q Consensus 371 ~~~l~l~~~~l~~-lp~~~~~l~~L~~L~l~~~-~l~~---~~~i~~l~~L~~L~l~~~-~l~~~-------~l~-~Lr~ 436 (532)
.+.+++.+|.+.. .|..++.+++|++|++++| .+.+ +..+.++++|++|++++| .++.. .++ +|++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 3677888888764 5777889999999999999 5664 345888999999999999 88753 678 9999
Q ss_pred EEeccccccC--CCCCcccccCCCCCEEecCCcc-cc-cccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCC
Q 048213 437 LSVRGLRASA--PNPTESEVALPKLETVCLSSIN-IE-RIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVG 512 (532)
Q Consensus 437 L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~-l~-~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~ 512 (532)
|++++|.... ...+..+.++++|++|+|++|. ++ ..+..+ .++++|++|+|++|..+..-....+ +++++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~ 273 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-----FQLNYLQHLSLSRCYDIIPETLLEL-GEIPT 273 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-----GGCTTCCEEECTTCTTCCGGGGGGG-GGCTT
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-----hCCCCCCEeeCCCCCCCCHHHHHHH-hcCCC
Confidence 9999994201 2234566789999999999997 54 444444 6789999999999874433212234 78999
Q ss_pred ccEEEeecC
Q 048213 513 LQCLEICEC 521 (532)
Q Consensus 513 L~~L~l~~c 521 (532)
|++|++++|
T Consensus 274 L~~L~l~~~ 282 (336)
T 2ast_B 274 LKTLQVFGI 282 (336)
T ss_dssp CCEEECTTS
T ss_pred CCEEeccCc
Confidence 999999999
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.28 E-value=5.2e-12 Score=134.39 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=117.2
Q ss_pred hhHHhhhhcccccC-CchhhhccccccEEEeccccccCc----ccccccccccEEeeccccccc-c------ccCCcceE
Q 048213 370 ARVVIDLTYMNLLS-LPSSLGLLTNLQTLCLYYCKLQDT----SVLGELKILEILRLRVNELTR-A------GSSQLKHL 437 (532)
Q Consensus 370 ~~~~l~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~~----~~i~~l~~L~~L~l~~~~l~~-~------~l~~Lr~L 437 (532)
..+.+++.+|.+.. +|..++.+++|++|++++|.+... ..+.++++|++|++++|.+.. + .+++|++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 34578888888877 677889999999999999988862 357889999999999998887 3 56899999
Q ss_pred EeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEE
Q 048213 438 SVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLE 517 (532)
Q Consensus 438 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~ 517 (532)
++++|.+ ....+..+. ++|++|+|++|.++.+|.++ +.+++|++|+|++| .++.+ |...++.+++|++|+
T Consensus 434 ~l~~n~l-~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~-----~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 434 NLSSNML-TGSVFRCLP--PKVKVLDLHNNRIMSIPKDV-----THLQALQELNVASN-QLKSV-PDGVFDRLTSLQYIW 503 (562)
T ss_dssp ECCSSCC-CGGGGSSCC--TTCSEEECCSSCCCCCCTTT-----TSSCCCSEEECCSS-CCCCC-CTTSTTTCTTCCCEE
T ss_pred ECCCCCC-Ccchhhhhc--CcCCEEECCCCcCcccChhh-----cCCCCCCEEECCCC-CCCCC-CHHHHhcCCCCCEEE
Confidence 9999976 333333322 69999999999999999888 78899999999984 58889 554237999999999
Q ss_pred eecCCc
Q 048213 518 ICECPV 523 (532)
Q Consensus 518 l~~c~~ 523 (532)
+++++-
T Consensus 504 l~~N~~ 509 (562)
T 3a79_B 504 LHDNPW 509 (562)
T ss_dssp CCSCCB
T ss_pred ecCCCc
Confidence 999873
No 91
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.28 E-value=3.6e-12 Score=131.82 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=89.7
Q ss_pred hHHhhhhcccccCC-chhhhccccccEEEeccccccC---cccccccccccEEeecccccccc------ccCCcceEEec
Q 048213 371 RVVIDLTYMNLLSL-PSSLGLLTNLQTLCLYYCKLQD---TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 371 ~~~l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
.+++++.++.+..+ |..++.+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|+++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 35678888888775 5568888888888888887653 34677888888888888877665 56788888888
Q ss_pred cccccCCCCCc--ccccCCCCCEEecCCcccccccc-cccccccccCCCccEEEeccCCCCCccchhh
Q 048213 441 GLRASAPNPTE--SEVALPKLETVCLSSINIERIWQ-NQVAAMSCGIQNLKRLILFNCWNLTCLFTSS 505 (532)
Q Consensus 441 ~~~~~~~~~~~--~~~~l~~L~~L~L~~~~l~~lp~-~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~ 505 (532)
+|.. ....+. .+.++++|++|+|++|.++.+++ .++ .++++|++|+|++|. +..+++..
T Consensus 112 ~n~l-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~~~ 173 (455)
T 3v47_A 112 QCNL-DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF----LNMRRFHVLDLTFNK-VKSICEED 173 (455)
T ss_dssp TSCC-BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG----GGCTTCCEEECTTCC-BSCCCTTT
T ss_pred CCCC-CccccCcccccCcccCCEEECCCCccCccCccccc----CCCCcccEEeCCCCc-ccccChhh
Confidence 8865 222232 37778888888888887776633 321 467888888888754 44443443
No 92
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.28 E-value=5e-12 Score=134.66 Aligned_cols=142 Identities=21% Similarity=0.216 Sum_probs=90.5
Q ss_pred HHhhhhcccccCCch-hhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccc
Q 048213 372 VVIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGL 442 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~ 442 (532)
+.++++++.+..++. .|..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|++++|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 456777777766543 47777777777777777666 34567777777777777766554 5667777777777
Q ss_pred cccCCCCCcccccCCCCCEEecCCccccc--ccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCc----cEE
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIER--IWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGL----QCL 516 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L----~~L 516 (532)
.+ ....+..++++++|++|++++|.++. +|..+ .++++|++|++++|. +..+++..+ +.+++| .+|
T Consensus 111 ~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-----~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~~~~~L 182 (570)
T 2z63_A 111 NL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNK-IQSIYCTDL-RVLHQMPLLNLSL 182 (570)
T ss_dssp CC-CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-----GGCTTCCEEECTTSC-CCEECGGGG-HHHHTCTTCCCEE
T ss_pred cc-ccCCCccccccccccEEecCCCccceecChhhh-----cccCCCCEEeCcCCc-cceecHHHc-cchhccchhhhhc
Confidence 65 22222356777777777777776664 45555 566777777777643 555544444 555555 566
Q ss_pred EeecC
Q 048213 517 EICEC 521 (532)
Q Consensus 517 ~l~~c 521 (532)
+++++
T Consensus 183 ~l~~n 187 (570)
T 2z63_A 183 DLSLN 187 (570)
T ss_dssp ECTTC
T ss_pred ccCCC
Confidence 66555
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.28 E-value=2e-12 Score=126.89 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=65.3
Q ss_pred HHhhhhcccccCCchhhhcc-----ccccEEEeccccccC--cccccccccccEEeecccccccc----------ccCCc
Q 048213 372 VVIDLTYMNLLSLPSSLGLL-----TNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA----------GSSQL 434 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l-----~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~----------~l~~L 434 (532)
+.+++.+|.+..+|..++.+ ++|++|++++|.+.. +..+.++++|++|++++|++.+. .+++|
T Consensus 124 ~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 203 (312)
T 1wwl_A 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203 (312)
T ss_dssp SEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC
T ss_pred cEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC
Confidence 34455555554444444444 455555555555544 23455555555555555543221 34455
Q ss_pred ceEEeccccccC-CCCC-cccccCCCCCEEecCCcccccccc-cccccccccCCCccEEEeccCCCCCccchhhhhhcCC
Q 048213 435 KHLSVRGLRASA-PNPT-ESEVALPKLETVCLSSINIERIWQ-NQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFV 511 (532)
Q Consensus 435 r~L~l~~~~~~~-~~~~-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~ 511 (532)
++|++++|.+.. +..+ ..+.++++|++|+|++|.++..++ .. ...+++|++|+|++|. ++.+ |..+ . +
T Consensus 204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~l~~L~~L~Ls~N~-l~~i-p~~~-~--~ 274 (312)
T 1wwl_A 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS----CDWPSQLNSLNLSFTG-LKQV-PKGL-P--A 274 (312)
T ss_dssp CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC----CCCCTTCCEEECTTSC-CSSC-CSSC-C--S
T ss_pred CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh----hhhcCCCCEEECCCCc-cChh-hhhc-c--C
Confidence 555555554300 0111 112344555555555555554331 11 0234556666665532 4555 4433 1 5
Q ss_pred CccEEEeecC
Q 048213 512 GLQCLEICEC 521 (532)
Q Consensus 512 ~L~~L~l~~c 521 (532)
+|++|+++++
T Consensus 275 ~L~~L~Ls~N 284 (312)
T 1wwl_A 275 KLSVLDLSYN 284 (312)
T ss_dssp EEEEEECCSS
T ss_pred CceEEECCCC
Confidence 5666666554
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=4.5e-12 Score=132.17 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=108.6
Q ss_pred hHHhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc-------ccCCcceEEecc
Q 048213 371 RVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA-------GSSQLKHLSVRG 441 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~-------~l~~Lr~L~l~~ 441 (532)
...+++.+|.+..+|.. .+++|++|++++|.+.. +..++++++|++|++++|.+... .+++|++|+|++
T Consensus 101 L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 101 IETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 34566666666665542 46788889998888887 44678889999999999988765 468899999999
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
|.+ ... .....+++|++|+|++|.++.+|+.+ ..+++|+.|+|++| .+..+ |..+ +.+++|++|++++|
T Consensus 179 N~l--~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~l~~L~~L~Ls~N-~l~~l-p~~l-~~l~~L~~L~l~~N 247 (487)
T 3oja_A 179 NFI--YDV-KGQVVFAKLKTLDLSSNKLAFMGPEF-----QSAAGVTWISLRNN-KLVLI-EKAL-RFSQNLEHFDLRGN 247 (487)
T ss_dssp SCC--CEE-ECCCCCTTCCEEECCSSCCCEECGGG-----GGGTTCSEEECTTS-CCCEE-CTTC-CCCTTCCEEECTTC
T ss_pred Ccc--ccc-cccccCCCCCEEECCCCCCCCCCHhH-----cCCCCccEEEecCC-cCccc-chhh-ccCCCCCEEEcCCC
Confidence 976 222 33446889999999999998888776 67889999999984 47778 6666 78899999999988
Q ss_pred Ccc
Q 048213 522 PVL 524 (532)
Q Consensus 522 ~~L 524 (532)
+-.
T Consensus 248 ~l~ 250 (487)
T 3oja_A 248 GFH 250 (487)
T ss_dssp CBC
T ss_pred CCc
Confidence 744
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=7e-12 Score=116.34 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=103.2
Q ss_pred HHhhhhcccccCCch--hhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 372 VVIDLTYMNLLSLPS--SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
+.+++.+|.+..+++ .|..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|+|++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 468899999988743 38999999999999999988 34799999999999999998877 678999999999
Q ss_pred ccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCC
Q 048213 442 LRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 442 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
|.+ ....+..+..+++|++|+|++|.++.+++..+ ..+++|++|+|++++
T Consensus 115 N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 115 NRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF----DTLHSLSTLNLLANP 164 (220)
T ss_dssp SCC-CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT----TTCTTCCEEECCSCC
T ss_pred CcC-CeECHhHcCCCccCCEEECCCCcCCEECHHHh----cCCCCCCEEEecCcC
Confidence 987 45557789999999999999999998854432 578999999999865
No 96
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.27 E-value=5e-12 Score=134.08 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=112.3
Q ss_pred HHHHhhHHhhhhcccccCCc-hhhhccccccEEEeccccccC-cc-cccccccccEEeecccccccc-------ccCCcc
Q 048213 366 EVARARVVIDLTYMNLLSLP-SSLGLLTNLQTLCLYYCKLQD-TS-VLGELKILEILRLRVNELTRA-------GSSQLK 435 (532)
Q Consensus 366 ~~~~~~~~l~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~-~~-~i~~l~~L~~L~l~~~~l~~~-------~l~~Lr 435 (532)
..+...+++++.+|.+..++ ..|+.+++|++|++++|.+.. ++ .++++++|++|++++|.+..+ .+++|+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 34455577888888887765 568888899999999888887 33 488888999999988887743 567889
Q ss_pred eEEeccccccCCCCC-cccccCCCCCEEecCCcccccc-cccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCc
Q 048213 436 HLSVRGLRASAPNPT-ESEVALPKLETVCLSSINIERI-WQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGL 513 (532)
Q Consensus 436 ~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L 513 (532)
+|++++|.. ....+ ..+.++++|++|++++|.++.. |..+ ..+++|++|+++++. +..+ |..+.+.+++|
T Consensus 127 ~L~L~~n~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L 198 (549)
T 2z81_A 127 TLRIGNVET-FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL-----KSIRDIHHLTLHLSE-SAFL-LEIFADILSSV 198 (549)
T ss_dssp EEEEEESSS-CCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-----TTCSEEEEEEEECSB-STTH-HHHHHHSTTTB
T ss_pred EEECCCCcc-ccccCHhhhhcccccCeeeccCCcccccChhhh-----hccccCceEecccCc-cccc-chhhHhhcccc
Confidence 999988864 23333 5678888899999998887763 4444 567888999988754 5666 55554678899
Q ss_pred cEEEeecCC
Q 048213 514 QCLEICECP 522 (532)
Q Consensus 514 ~~L~l~~c~ 522 (532)
++|++++|.
T Consensus 199 ~~L~L~~n~ 207 (549)
T 2z81_A 199 RYLELRDTN 207 (549)
T ss_dssp SEEEEESCB
T ss_pred cEEEccCCc
Confidence 999988874
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.27 E-value=7.9e-12 Score=123.69 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=81.7
Q ss_pred hHHhhhhcccccCCchh-hhccccccEEEeccccccC----cccccccccccEEeecccccccc---ccCCcceEEeccc
Q 048213 371 RVVIDLTYMNLLSLPSS-LGLLTNLQTLCLYYCKLQD----TSVLGELKILEILRLRVNELTRA---GSSQLKHLSVRGL 442 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~----~~~i~~l~~L~~L~l~~~~l~~~---~l~~Lr~L~l~~~ 442 (532)
.+.+++.+|.+..+|.. +..+++|++|++++|.+.. +..+..+ +|++|++++|.+..+ -.++|++|++++|
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n 203 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHN 203 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCC
Confidence 34566666666666543 6677777777777776642 3344444 555666655555544 1245666666666
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
.. ....+..+..+++|++|+|++|.++.++...+ ..+++|+.|+|++| .+..+ |..+ +.+++|++|++++|
T Consensus 204 ~i-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N-~l~~l-p~~l-~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 204 KI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSL----SFLPTLRELHLDNN-KLSRV-PAGL-PDLKLLQVVYLHTN 274 (332)
T ss_dssp CC-CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG----GGCTTCCEEECCSS-CCCBC-CTTG-GGCTTCCEEECCSS
T ss_pred cC-CccCHHHhcCCCCCCEEECCCCcCCcCChhHh----hCCCCCCEEECCCC-cCeec-Chhh-hcCccCCEEECCCC
Confidence 54 23333455666666666666666665554321 34566666666653 35566 4444 56666666666655
No 98
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.26 E-value=1.3e-11 Score=134.52 Aligned_cols=147 Identities=21% Similarity=0.232 Sum_probs=113.8
Q ss_pred hhHHhhhhcccccCCch-hhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEec
Q 048213 370 ARVVIDLTYMNLLSLPS-SLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 370 ~~~~l~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
..+.+++.++.+..+|. .|+.+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|+++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 34678888888888765 48889999999999988877 45688899999999999887776 57889999999
Q ss_pred cccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhh-hcCCCccEEEee
Q 048213 441 GLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSII-SSFVGLQCLEIC 519 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~-~~L~~L~~L~l~ 519 (532)
+|.+ ....+..++++++|++|+|++|.++..+...+ .++++|++|++++|. +..+++..+. ..+++|++|+++
T Consensus 106 ~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 106 SNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ----VQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS----SCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECT
T ss_pred CCcc-CccChhHccccCCCCEEECCCCcccccCchhh----cccccCCEEEccCCc-ccccCHHHhhccccccccEEECC
Confidence 9876 44445678889999999999998877655432 578899999998754 6667455441 245889999998
Q ss_pred cCC
Q 048213 520 ECP 522 (532)
Q Consensus 520 ~c~ 522 (532)
+|.
T Consensus 180 ~n~ 182 (680)
T 1ziw_A 180 SNQ 182 (680)
T ss_dssp TCC
T ss_pred CCc
Confidence 873
No 99
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.5e-11 Score=111.54 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=73.2
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEeecccccccc------ccCCcceEEecccccc
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRAS 445 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~ 445 (532)
++++.++.+..+|..+. ++|++|++++|.+.. +..+.++++|++|++++|.++.+ .+++|++|+|++|++
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l- 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL- 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc-
Confidence 45666777777776543 577888888887776 45677777777777777776655 455666666666655
Q ss_pred CCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEecc
Q 048213 446 APNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFN 494 (532)
Q Consensus 446 ~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~ 494 (532)
....+..|..+++|++|+|++|.|+.+|...+ ..+++|+.|+|++
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF----NDLSALSHLAIGA 135 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT----TTCTTCCEEECCS
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhh----hcCccccEEEeCC
Confidence 33334455666666666666666666655431 2456666666665
No 100
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.25 E-value=1.5e-11 Score=133.91 Aligned_cols=153 Identities=17% Similarity=0.162 Sum_probs=113.5
Q ss_pred HHHHHhhHHhhhhcccccCC-chhhhccccccEEEeccccccCc-c-cccccccccEEeecccccccc------ccCCcc
Q 048213 365 MEVARARVVIDLTYMNLLSL-PSSLGLLTNLQTLCLYYCKLQDT-S-VLGELKILEILRLRVNELTRA------GSSQLK 435 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~~-~-~i~~l~~L~~L~l~~~~l~~~------~l~~Lr 435 (532)
+......+.+++.++.+..+ |..++.+++|++|++++|.+... + .+.++++|++|++++|.+..+ .+++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 44445567788888888776 55688888888888888888773 2 488888888888888877766 567888
Q ss_pred eEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccE
Q 048213 436 HLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQC 515 (532)
Q Consensus 436 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~ 515 (532)
+|++++|.. ....+..++++++|++|++++|.++.++...+. ...+++|++|++++| .+..++|..+ +.+++|+.
T Consensus 125 ~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~ 199 (680)
T 1ziw_A 125 TLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELD--IFANSSLKKLELSSN-QIKEFSPGCF-HAIGRLFG 199 (680)
T ss_dssp EEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG--GGTTCEESEEECTTC-CCCCBCTTGG-GGSSEECE
T ss_pred EEECCCCcc-cccCchhhcccccCCEEEccCCcccccCHHHhh--ccccccccEEECCCC-cccccChhhh-hhhhhhhh
Confidence 888888876 455566778888888888888888877665321 124578888888875 4666656555 77888888
Q ss_pred EEeecCC
Q 048213 516 LEICECP 522 (532)
Q Consensus 516 L~l~~c~ 522 (532)
|+++++.
T Consensus 200 L~l~~~~ 206 (680)
T 1ziw_A 200 LFLNNVQ 206 (680)
T ss_dssp EECTTCC
T ss_pred hhccccc
Confidence 8887764
No 101
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=2.4e-11 Score=110.19 Aligned_cols=117 Identities=24% Similarity=0.261 Sum_probs=76.2
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccCc-c--cccccccccEEeecccccccc------ccCCcceEEecccc
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDT-S--VLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLR 443 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~-~--~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~ 443 (532)
.+++.++.+..+|..+.. ++++|++++|.+... + .+.++++|++|++++|+++.+ .+++|++|+|++|+
T Consensus 12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 466777777777776543 788888888887773 2 377788888888887777665 45666677776666
Q ss_pred ccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCC
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~ 496 (532)
+ ....+..+.++++|++|+|++|.++.+++..+ ..+++|++|+|++++
T Consensus 90 l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 I-KEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----EHLNSLTSLNLASNP 137 (192)
T ss_dssp C-CEECSSSSTTCTTCCEEECCSSCCCEECTTSS----TTCTTCCEEECTTCC
T ss_pred C-CccCHHHhcCCCCCCEEECCCCcCCeeCHHHh----hcCCCCCEEEeCCCC
Confidence 5 33334446666667777777666665533321 356666667666644
No 102
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.24 E-value=1.7e-11 Score=132.27 Aligned_cols=129 Identities=17% Similarity=0.117 Sum_probs=75.5
Q ss_pred ccccccEEEeccccccC-ccc-ccccccccEEeecccccccc------cc-------CCcceEEeccccccCCCCCcccc
Q 048213 390 LLTNLQTLCLYYCKLQD-TSV-LGELKILEILRLRVNELTRA------GS-------SQLKHLSVRGLRASAPNPTESEV 454 (532)
Q Consensus 390 ~l~~L~~L~l~~~~l~~-~~~-i~~l~~L~~L~l~~~~l~~~------~l-------~~Lr~L~l~~~~~~~~~~~~~~~ 454 (532)
.+.+|++|++++|.+.. +.. +..+++|++|++++|.+..+ .. ++|++|+|++|.+ ...|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL--TKLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC--CBCCGGGS
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC--CccChhhh
Confidence 34455555555555544 222 33455666666666655544 11 1667777777665 35555555
Q ss_pred --cCCCCCEEecCCcccccccccccccccccCCCccEEEecc------CCCCCccchhhhhhcCCCccEEEeecCCcccc
Q 048213 455 --ALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFN------CWNLTCLFTSSIISSFVGLQCLEICECPVLKE 526 (532)
Q Consensus 455 --~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~------c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L~~ 526 (532)
.+++|++|+|++|.++.+|..+ +.+++|++|+|++ +...+.+ |..+ +.+++|++|+|++|.- ..
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ip~~~-----~~l~~L~~L~Ls~N~~ls~N~l~~~~-p~~l-~~l~~L~~L~Ls~N~l-~~ 580 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSKFPTQP-----LNSSTLKGFGIRNQRDAQGNRTLREW-PEGI-TLCPSLTQLQIGSNDI-RK 580 (636)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGG-----GGCSSCCEEECCSCBCTTCCBCCCCC-CTTG-GGCSSCCEEECCSSCC-CB
T ss_pred hccCCCcCEEECCCCCCCCcChhh-----hcCCCCCEEECCCCcccccCcccccC-hHHH-hcCCCCCEEECCCCcC-Cc
Confidence 6777777777777777666665 5667777777743 3334445 5555 5677777777777653 44
Q ss_pred cc
Q 048213 527 II 528 (532)
Q Consensus 527 i~ 528 (532)
|+
T Consensus 581 ip 582 (636)
T 4eco_A 581 VN 582 (636)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 103
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.24 E-value=7.5e-11 Score=109.10 Aligned_cols=179 Identities=9% Similarity=0.001 Sum_probs=114.8
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEecc---CchhhHHHHHHHHh-
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEE---SESGRARSLCNRLK- 179 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~---~~~~~~~~l~~~l~- 179 (532)
...++||++.++.+.+++.....+.+.|+|++|+|||++|+.+++...... .......... ........+.....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 457899999999999999877666699999999999999999988643221 0111111111 11122223333332
Q ss_pred ----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecChHHh-hhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 180 ----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSLDVL-SRKMDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 180 ----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
.+++.+||+||++... .++.+...+.....+..+|+||+..... .........+.+.+++.++..+++...+.
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHH
Confidence 2578999999998652 3334433333334577888888865422 11112234889999999999999988764
Q ss_pred CCCCCcchHHHHHHHHHHcCCchHHHHHHHHH
Q 048213 253 DYIEGSEFKWVAKDVAKKCAGLPVSIVTVARA 284 (532)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 284 (532)
.... .-..+....+++.++|.|..+..+...
T Consensus 176 ~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 176 KEGV-KITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp HHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1111 122566788999999999866554443
No 104
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=4.5e-11 Score=108.41 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=99.4
Q ss_pred cEEEeccccccC-cccccccccccEEeecccccccc-----ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcc
Q 048213 395 QTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSIN 468 (532)
Q Consensus 395 ~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 468 (532)
++++++++.+.. |..+ .++|++|++++|+++.+ .+++|++|+|++|.+ ....+..|.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcC-CEeCHhHccCCCCCCEEECCCCc
Confidence 678888888887 4334 36899999999998877 678999999999987 44555679999999999999999
Q ss_pred cccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 469 IERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 469 l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
|+.+|+..+ ..+++|++|+|++ +.+..+++..+ ..+++|++|+|++++
T Consensus 90 l~~i~~~~f----~~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTF----DGLKSLRLLSLHG-NDISVVPEGAF-NDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTT----TTCTTCCEEECCS-SCCCBCCTTTT-TTCTTCCEEECCSSC
T ss_pred cCEeCHHHh----CCCCCCCEEECCC-CCCCeeChhhh-hcCccccEEEeCCCC
Confidence 999887642 5789999999998 56888944445 789999999999876
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=2e-11 Score=128.77 Aligned_cols=141 Identities=19% Similarity=0.090 Sum_probs=103.3
Q ss_pred hhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc--ccCCcceEEeccccccCC
Q 048213 370 ARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA--GSSQLKHLSVRGLRASAP 447 (532)
Q Consensus 370 ~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~--~l~~Lr~L~l~~~~~~~~ 447 (532)
..+.+++.+|.+..+|. +.. +|++|++++|.+..++. .+++|++|++++|.++.+ .+++|++|+|++|.+ .
T Consensus 101 ~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L--~ 173 (571)
T 3cvr_A 101 SLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQL--T 173 (571)
T ss_dssp TCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC--S
T ss_pred CCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCC--C
Confidence 34567777777777777 554 78888888888777444 678888888888888776 467899999999976 3
Q ss_pred CCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCcc
Q 048213 448 NPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPVL 524 (532)
Q Consensus 448 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L 524 (532)
..|. +. ++|++|+|++|.|+.+|. +.+......+.|++|+|++| .++.+ |..+ ..+++|++|+|++|+--
T Consensus 174 ~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N-~l~~l-p~~l-~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 174 FLPE-LP--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCREN-RITHI-PENI-LSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCCC-CC--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSS-CCCCC-CGGG-GGSCTTEEEECCSSSCC
T ss_pred Ccch-hh--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCC-cceec-CHHH-hcCCCCCEEEeeCCcCC
Confidence 4555 55 899999999999998888 51100001123399999984 58899 7776 57999999999998743
No 106
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.23 E-value=3.9e-11 Score=124.50 Aligned_cols=137 Identities=22% Similarity=0.282 Sum_probs=78.4
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEeccccccCC
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRASAP 447 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~ 447 (532)
+.+++.+|.+..++ .+..+++|++|++++|.+.....+..+++|+.|++++|.+..+ .+++|++|++++|.. .
T Consensus 224 ~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l--~ 300 (466)
T 1o6v_A 224 DELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL--E 300 (466)
T ss_dssp CEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC--S
T ss_pred CEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcc--c
Confidence 44455555554443 3555556666666666555543455566666666666655544 455666666666654 2
Q ss_pred CCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 448 NPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 448 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
..+ .+..+++|++|+|++|.++.+++ + ..+++|+.|++++| .+..+ + .+ +.+++|++|++++|+
T Consensus 301 ~~~-~~~~l~~L~~L~L~~n~l~~~~~-~-----~~l~~L~~L~l~~n-~l~~~-~-~l-~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 301 DIS-PISNLKNLTYLTLYFNNISDISP-V-----SSLTKLQRLFFYNN-KVSDV-S-SL-ANLTNINWLSAGHNQ 364 (466)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCSCCGG-G-----GGCTTCCEEECCSS-CCCCC-G-GG-TTCTTCCEEECCSSC
T ss_pred Cch-hhcCCCCCCEEECcCCcCCCchh-h-----ccCccCCEeECCCC-ccCCc-h-hh-ccCCCCCEEeCCCCc
Confidence 222 25666666666666666665543 2 35567777777765 35555 2 23 567777777777664
No 107
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.23 E-value=3e-11 Score=129.70 Aligned_cols=148 Identities=20% Similarity=0.128 Sum_probs=95.2
Q ss_pred HhhHHhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeeccccccc-c------ccCCcceEEe
Q 048213 369 RARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTR-A------GSSQLKHLSV 439 (532)
Q Consensus 369 ~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~-~------~l~~Lr~L~l 439 (532)
...+.+++.++.+..+|..+..+++|++|++++|.+.. +..+.++++|++|++++|.+.. + .+++|++|++
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 34456667777776777767777777777777776665 3456677777777777765542 1 5667777777
Q ss_pred ccccccCCCC--CcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEE
Q 048213 440 RGLRASAPNP--TESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLE 517 (532)
Q Consensus 440 ~~~~~~~~~~--~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~ 517 (532)
++|.. .... +..+..+++|++|++++|.+..+++..+ ..+++|++|++++|. +....+...++.+++|++|+
T Consensus 358 ~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 358 SHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF----KECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT----TTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEE
T ss_pred CCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHh----cCCccCCeEECCCCc-CCCcccchhhhCcccCCEEE
Confidence 77755 2211 4556777777777777777666544331 457788888887755 33332333236788888888
Q ss_pred eecCC
Q 048213 518 ICECP 522 (532)
Q Consensus 518 l~~c~ 522 (532)
+++|.
T Consensus 432 l~~n~ 436 (606)
T 3t6q_A 432 LSHSL 436 (606)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 88774
No 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=8.7e-12 Score=111.37 Aligned_cols=118 Identities=13% Similarity=0.134 Sum_probs=102.1
Q ss_pred hHHhhhhcccccCCchhhhccc-cccEEEeccccccCcccccccccccEEeecccccccc------ccCCcceEEecccc
Q 048213 371 RVVIDLTYMNLLSLPSSLGLLT-NLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLR 443 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~~~~l~-~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~ 443 (532)
.+.+++.+|.+..+|. +..+. +|++|++++|.+..++.+..+++|++|++++|.+..+ .+++|++|++++|.
T Consensus 21 L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 21 DRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99 (176)
T ss_dssp CEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred ceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc
Confidence 3578899999988865 55555 9999999999998888899999999999999998876 57899999999997
Q ss_pred ccCCCCCc--ccccCCCCCEEecCCccccccccc----ccccccccCCCccEEEeccCC
Q 048213 444 ASAPNPTE--SEVALPKLETVCLSSINIERIWQN----QVAAMSCGIQNLKRLILFNCW 496 (532)
Q Consensus 444 ~~~~~~~~--~~~~l~~L~~L~L~~~~l~~lp~~----~~~~~~~~L~~L~~L~L~~c~ 496 (532)
+ ...+. .+..+++|++|++++|.+..+|.. + ..+++|++|+++++.
T Consensus 100 i--~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~-----~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 100 L--VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI-----YKVPQVRVLDFQKVK 151 (176)
T ss_dssp C--CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHH-----HHCTTCSEETTEECC
T ss_pred C--CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHH-----HHCCccceeCCCcCC
Confidence 6 55555 788999999999999999988875 4 578999999999865
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.2e-11 Score=135.20 Aligned_cols=115 Identities=17% Similarity=0.003 Sum_probs=74.8
Q ss_pred CchhhhccccccEEEeccccccC-cccccccccccEEeecccccccc-----ccCCcceEEeccccccCCCCCcccccCC
Q 048213 384 LPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLRASAPNPTESEVALP 457 (532)
Q Consensus 384 lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~ 457 (532)
.|..+..+.+|+.|++++|.+.. +..+.++++|++|+|++|.++.+ .+++|++|+|++|.+ ..+|..+++++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l--~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL--TSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC--SSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC--CccChhhcCCC
Confidence 45556777777777777777766 44566777777777777776655 566777777777765 35666777777
Q ss_pred CCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhh
Q 048213 458 KLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSI 506 (532)
Q Consensus 458 ~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~ 506 (532)
+|++|+|++|.|+.+|.++ .+|++|++|+|++|+ +...+|..+
T Consensus 294 ~L~~L~L~~N~l~~lp~~~-----~~l~~L~~L~L~~N~-l~~~~p~~~ 336 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEF-----GNLCNLQFLGVEGNP-LEKQFLKIL 336 (727)
T ss_dssp TCSEEECCSSCCCCCCSST-----TSCTTCCCEECTTSC-CCSHHHHHH
T ss_pred CCCEEECCCCCCCccChhh-----hcCCCccEEeCCCCc-cCCCChHHH
Confidence 7777777777777776665 667777777777644 444434444
No 110
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=3e-11 Score=133.46 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=65.7
Q ss_pred ccccccEEeecccccccc-----c--------cCCcceEEeccccccCCCCCcccc--cCCCCCEEecCCcccccccccc
Q 048213 412 ELKILEILRLRVNELTRA-----G--------SSQLKHLSVRGLRASAPNPTESEV--ALPKLETVCLSSINIERIWQNQ 476 (532)
Q Consensus 412 ~l~~L~~L~l~~~~l~~~-----~--------l~~Lr~L~l~~~~~~~~~~~~~~~--~l~~L~~L~L~~~~l~~lp~~~ 476 (532)
.+++|+.|++++|.+..+ . +++|++|+|++|++ ...|..+. .+++|+.|+|++|.++.+|..+
T Consensus 695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L--~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l 772 (876)
T 4ecn_A 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL--TSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772 (876)
T ss_dssp TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC--CCCCGGGSTTTCTTCCEEECCSSCCSSCCCGG
T ss_pred cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCC--ccchHHhhhccCCCcCEEEeCCCCCCccchhh
Confidence 455666666666655544 1 11677777777765 35555555 6777777777777777666665
Q ss_pred cccccccCCCccEEEecc------CCCCCccchhhhhhcCCCccEEEeecCCcccccc
Q 048213 477 VAAMSCGIQNLKRLILFN------CWNLTCLFTSSIISSFVGLQCLEICECPVLKEII 528 (532)
Q Consensus 477 ~~~~~~~L~~L~~L~L~~------c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L~~i~ 528 (532)
+.+++|+.|+|++ |.....+ |..+ +.+++|++|+|++|.- ..|+
T Consensus 773 -----~~L~~L~~L~Ls~N~~ls~N~l~~~i-p~~l-~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 773 -----LNSSQLKAFGIRHQRDAEGNRILRQW-PTGI-TTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp -----GGCTTCCEEECCCCBCTTCCBCCCCC-CTTG-GGCSSCCEEECCSSCC-CBCC
T ss_pred -----hcCCCCCEEECCCCCCcccccccccC-hHHH-hcCCCCCEEECCCCCC-CccC
Confidence 5667777777755 3333444 5555 5677777777777653 4443
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.21 E-value=3.9e-11 Score=124.55 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=120.2
Q ss_pred HHHhhHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc----ccCCcceEEeccc
Q 048213 367 VARARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGL 442 (532)
Q Consensus 367 ~~~~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~ 442 (532)
.+...+.+++.+|.+..+++ +..+++|++|++++|.+...+.+..+++|++|++++|.+..+ .+++|++|++++|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS
T ss_pred cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC
Confidence 33455778999999988876 899999999999999999866699999999999999998877 6889999999999
Q ss_pred cccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
.. ...+ .+..+++|++|++++|.++.++ .+ ..+++|+.|++++|. +..++| + +.+++|++|++++|+
T Consensus 320 ~l--~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l-----~~l~~L~~L~l~~n~-l~~~~~--~-~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 320 NI--SDIS-PVSSLTKLQRLFFYNNKVSDVS-SL-----ANLTNINWLSAGHNQ-ISDLTP--L-ANLTRITQLGLNDQA 386 (466)
T ss_dssp CC--SCCG-GGGGCTTCCEEECCSSCCCCCG-GG-----TTCTTCCEEECCSSC-CCBCGG--G-TTCTTCCEEECCCEE
T ss_pred cC--CCch-hhccCccCCEeECCCCccCCch-hh-----ccCCCCCEEeCCCCc-cCccch--h-hcCCCCCEEeccCCc
Confidence 76 3333 3789999999999999998874 33 578999999999876 666645 4 789999999999985
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=2.7e-11 Score=109.78 Aligned_cols=119 Identities=19% Similarity=0.246 Sum_probs=93.9
Q ss_pred cEEEeccccccC-cccccccccccEEeecccccccc-------ccCCcceEEeccccccCCCCCcccccCCCCCEEecCC
Q 048213 395 QTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA-------GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSS 466 (532)
Q Consensus 395 ~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~-------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 466 (532)
++++++++.+.. |..+. .+|++|++++|++..+ .+++|++|+|++|.+ ....+..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCCEEECCC
Confidence 678888888877 43343 3889999999987765 567899999999987 444577888999999999999
Q ss_pred cccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 467 INIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 467 ~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
|.|+.++...+ ..+++|++|+|+++ .+..++|..+ +.+++|++|+|++++
T Consensus 88 N~l~~~~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMF----LGLHQLKTLNLYDN-QISCVMPGSF-EHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSS----TTCTTCCEEECCSS-CCCEECTTSS-TTCTTCCEEECTTCC
T ss_pred CcCCccCHHHh----cCCCCCCEEECCCC-cCCeeCHHHh-hcCCCCCEEEeCCCC
Confidence 99988877642 46889999999974 5777756666 789999999998876
No 113
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.21 E-value=1.9e-11 Score=120.97 Aligned_cols=146 Identities=17% Similarity=0.147 Sum_probs=108.1
Q ss_pred hHHhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccc
Q 048213 371 RVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGL 442 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~ 442 (532)
.+.+++.++.+..+|..+. ++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|++|++++|
T Consensus 174 L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred cCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 4567788888888877654 688888898888877 35688888999999998887766 5678999999988
Q ss_pred cccCCCCCcccccCCCCCEEecCCccccccccccccccc--ccCCCccEEEeccCCCCC--ccchhhhhhcCCCccEEEe
Q 048213 443 RASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMS--CGIQNLKRLILFNCWNLT--CLFTSSIISSFVGLQCLEI 518 (532)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~--~~L~~L~~L~L~~c~~l~--~l~p~~~~~~L~~L~~L~l 518 (532)
.+ ...|..+..+++|++|++++|.++.+|...+.... ....+|+.|++++++ +. .++|..+ ..+++|+.|++
T Consensus 252 ~l--~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~-~~l~~L~~l~l 327 (332)
T 2ft3_A 252 KL--SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATF-RCVTDRLAIQF 327 (332)
T ss_dssp CC--CBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGG-TTBCCSTTEEC
T ss_pred cC--eecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc-ccccccCcccc-cccchhhhhhc
Confidence 76 46777788889999999999988888776532211 124678889998866 43 4545555 78889999998
Q ss_pred ecCC
Q 048213 519 CECP 522 (532)
Q Consensus 519 ~~c~ 522 (532)
++|.
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 8875
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=3.9e-11 Score=127.07 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=93.3
Q ss_pred cccEEEeccccccCcccccccccccEEeecccccccc-----ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCc
Q 048213 393 NLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSI 467 (532)
Q Consensus 393 ~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 467 (532)
.|++|++++|.+..++.++++++|++|++++|.++.+ .+++|++|+|++|++ ..+| .++++++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l--~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--ENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC--CCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC--CCCc-ccCCCCCCcEEECCCC
Confidence 5888999999888865688888999999999888766 678899999998876 3455 7889999999999999
Q ss_pred ccccc--cccccccccccCCCccEEEeccCCCCCccchh--hhhhcCCCccEEEe
Q 048213 468 NIERI--WQNQVAAMSCGIQNLKRLILFNCWNLTCLFTS--SIISSFVGLQCLEI 518 (532)
Q Consensus 468 ~l~~l--p~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~--~~~~~L~~L~~L~l 518 (532)
.|+.+ |..+ ..|++|++|+|++++ +..++|. .+...+++|+.|++
T Consensus 519 ~l~~~~~p~~l-----~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPL-----VSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGG-----GGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHH-----hcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 99888 6666 788999999999854 6666342 22345889998864
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.19 E-value=3.7e-11 Score=134.04 Aligned_cols=143 Identities=17% Similarity=0.117 Sum_probs=85.3
Q ss_pred HHhhhhcccccCC-chhhhccccccEEEeccccccC---cccccccccccEEeecccccccc------ccCCcceEEecc
Q 048213 372 VVIDLTYMNLLSL-PSSLGLLTNLQTLCLYYCKLQD---TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRG 441 (532)
Q Consensus 372 ~~l~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~ 441 (532)
+.+++++|.+..+ |..|..+++|++|++++|.... +..+.++++|++|+|++|.+..+ .+++|++|+|++
T Consensus 27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence 4566666666554 4456667777777776664332 34566677777777777666554 566677777776
Q ss_pred ccccCCCCCcc--cccCCCCCEEecCCcccccccc--cccccccccCCCccEEEeccCCCCCccchhhhhhcC--CCccE
Q 048213 442 LRASAPNPTES--EVALPKLETVCLSSINIERIWQ--NQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSF--VGLQC 515 (532)
Q Consensus 442 ~~~~~~~~~~~--~~~l~~L~~L~L~~~~l~~lp~--~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L--~~L~~ 515 (532)
|.. ....+.. ++++++|++|+|++|.++.++. .+ .+|++|++|+|+++. +..+.+..+ +.+ ++|++
T Consensus 107 n~l-~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-----~~L~~L~~L~Ls~N~-i~~~~~~~l-~~l~~~~L~~ 178 (844)
T 3j0a_A 107 CGL-SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF-----GKLNSLKSIDFSSNQ-IFLVCEHEL-EPLQGKTLSF 178 (844)
T ss_dssp CCC-SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG-----GTCSSCCEEEEESSC-CCCCCSGGG-HHHHHCSSCC
T ss_pred CCC-CcccccCccccccCCCCEEECCCCcccccccchhH-----hhCCCCCEEECCCCc-CCeeCHHHc-ccccCCccce
Confidence 655 2223332 6666777777777776655432 22 456677777776643 444434444 444 66777
Q ss_pred EEeecCC
Q 048213 516 LEICECP 522 (532)
Q Consensus 516 L~l~~c~ 522 (532)
|++++|.
T Consensus 179 L~L~~n~ 185 (844)
T 3j0a_A 179 FSLAANS 185 (844)
T ss_dssp CEECCSB
T ss_pred EECCCCc
Confidence 7766654
No 116
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.19 E-value=2.6e-11 Score=127.64 Aligned_cols=136 Identities=18% Similarity=0.144 Sum_probs=98.3
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccCc--ccccccccccEEeecccccccc------ccCCcceEEecccc
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDT--SVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLR 443 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~ 443 (532)
+.++++++.++.+|..+. ++|++|++++|.+... ..+.++++|++|++++|++..+ .+++|++|+|++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 356777888888887665 7888888888887772 4678888888888888877765 56788888888886
Q ss_pred ccCCCCCcccccCCCCCEEecCCccccc--ccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCc--cEEEee
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIER--IWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGL--QCLEIC 519 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L--~~L~l~ 519 (532)
+ ...|.. .+++|++|+|++|.++. +|..+ .++++|++|++++|. +.. ..+ +.+++| ++|+++
T Consensus 81 l--~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-----~~l~~L~~L~L~~n~-l~~---~~~-~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 81 L--VKISCH--PTVNLKHLDLSFNAFDALPICKEF-----GNMSQLKFLGLSTTH-LEK---SSV-LPIAHLNISKVLLV 146 (520)
T ss_dssp C--CEEECC--CCCCCSEEECCSSCCSSCCCCGGG-----GGCTTCCEEEEEESS-CCG---GGG-GGGTTSCEEEEEEE
T ss_pred e--eecCcc--ccCCccEEeccCCccccccchhhh-----ccCCcceEEEecCcc-cch---hhc-cccccceeeEEEee
Confidence 6 344444 67888888888887775 34555 677888888888754 443 233 566777 888888
Q ss_pred cCCc
Q 048213 520 ECPV 523 (532)
Q Consensus 520 ~c~~ 523 (532)
+|..
T Consensus 147 ~n~l 150 (520)
T 2z7x_B 147 LGET 150 (520)
T ss_dssp ECTT
T ss_pred cccc
Confidence 7753
No 117
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.19 E-value=2.5e-11 Score=135.39 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=87.5
Q ss_pred hhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeeccccc-ccc------ccCCcceEEeccccc
Q 048213 374 IDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNEL-TRA------GSSQLKHLSVRGLRA 444 (532)
Q Consensus 374 l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l-~~~------~l~~Lr~L~l~~~~~ 444 (532)
.+.++++++.+|. ..+++++|++++|.+.. +..+.++++|++|++++|.. ..+ .+++|++|+|++|.+
T Consensus 9 ~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 3445566666765 34677777777777665 45677777777777777732 221 566777777777765
Q ss_pred cCCCCCcccccCCCCCEEecCCccccc-ccccccccccccCCCccEEEeccCCCCCccch-hhhhhcCCCccEEEeecCC
Q 048213 445 SAPNPTESEVALPKLETVCLSSINIER-IWQNQVAAMSCGIQNLKRLILFNCWNLTCLFT-SSIISSFVGLQCLEICECP 522 (532)
Q Consensus 445 ~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p-~~~~~~L~~L~~L~l~~c~ 522 (532)
....|..|+++++|++|+|++|.++. +|... ...+|++|++|+|++|. +..+++ ..+ ++|++|++|+|++|.
T Consensus 86 -~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~~~L~~L~~L~Ls~N~-l~~~~~~~~~-~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 86 -YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG---YFRNLKALTRLDLSKNQ-IRSLYLHPSF-GKLNSLKSIDFSSNQ 159 (844)
T ss_dssp -CEECTTSSCSCSSCCCEECTTCCCSSCCSTTC---CCSSCSSCCEEEEESCC-CCCCCCCGGG-GTCSSCCEEEEESSC
T ss_pred -cccCHhHccCCcccCEeeCcCCCCCcccccCc---cccccCCCCEEECCCCc-ccccccchhH-hhCCCCCEEECCCCc
Confidence 34456667777777777777776664 23320 01466777777777654 444423 334 677777777777653
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.19 E-value=6.2e-11 Score=122.45 Aligned_cols=127 Identities=18% Similarity=0.099 Sum_probs=109.9
Q ss_pred chhhhccccccEEEeccccccCcccccccccccEEeecccccccc---ccCCcceEEeccccccCCCCCcccccCCCCCE
Q 048213 385 PSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA---GSSQLKHLSVRGLRASAPNPTESEVALPKLET 461 (532)
Q Consensus 385 p~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~---~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~ 461 (532)
+..++.+++|++|++++|.+.+.+.+..+++|++|++++|+++.+ .+++|++|++++|.+ ... +++++++|++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l--~~~--~~~~l~~L~~ 110 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKL--TNL--DVTPLTKLTY 110 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCC--SCC--CCTTCTTCCE
T ss_pred ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCC--cee--ecCCCCcCCE
Confidence 446889999999999999999977899999999999999999887 678999999999987 333 3889999999
Q ss_pred EecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCccccc
Q 048213 462 VCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPVLKEI 527 (532)
Q Consensus 462 L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L~~i 527 (532)
|++++|.++.+| + ..+++|++|++++|. ++.+ + + +.+++|++|++++|..+..+
T Consensus 111 L~L~~N~l~~l~--~-----~~l~~L~~L~l~~N~-l~~l-~--l-~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 111 LNCDTNKLTKLD--V-----SQNPLLTYLNCARNT-LTEI-D--V-SHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp EECCSSCCSCCC--C-----TTCTTCCEEECTTSC-CSCC-C--C-TTCTTCCEEECTTCSCCCCC
T ss_pred EECCCCcCCeec--C-----CCCCcCCEEECCCCc-ccee-c--c-ccCCcCCEEECCCCCccccc
Confidence 999999999875 3 678999999999854 7777 4 3 78999999999999766554
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.4e-10 Score=103.58 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=60.0
Q ss_pred hhhhcccccCCchhhhccccccEEEeccccccCc--ccccccccccEEeecccccccc------ccCCcceEEecccccc
Q 048213 374 IDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDT--SVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRAS 445 (532)
Q Consensus 374 l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~ 445 (532)
+++.++.+..+|..+ .++|++|++++|.+... ..+..+++|++|++++|.+..+ .+++|++|++++|.+
T Consensus 12 l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l- 88 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL- 88 (177)
T ss_dssp EECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred EEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc-
Confidence 445555566666443 25667777777666652 2356666666666666655544 344555555555544
Q ss_pred CCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccC
Q 048213 446 APNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNC 495 (532)
Q Consensus 446 ~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c 495 (532)
....+..+..+++|++|+|++|.++.+|...+ ..+++|++|+|+++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIF----DRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT----TTCTTCCEEECCSS
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHh----cCCcccCEEEecCC
Confidence 22222234455555555555555555444431 23455555555543
No 120
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.18 E-value=5.6e-11 Score=126.41 Aligned_cols=136 Identities=20% Similarity=0.214 Sum_probs=110.7
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecccc
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLR 443 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~ 443 (532)
+.+++.++.++.+|..+. ++|++|++++|.+.. +..+.++++|++|++++|+++.+ .+++|++|++++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 578999999999998764 799999999999988 35799999999999999988877 67899999999998
Q ss_pred ccCCCCCcccccCCCCCEEecCCccccccc--ccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCc--cEEEee
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIERIW--QNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGL--QCLEIC 519 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp--~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L--~~L~l~ 519 (532)
+ ...|.. .+++|++|+|++|.++.+| ..+ .++++|++|+|+++. +... .+ +.+++| ++|+++
T Consensus 112 l--~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~-----~~l~~L~~L~L~~n~-l~~~---~~-~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 112 L--QNISCC--PMASLRHLDLSFNDFDVLPVCKEF-----GNLTKLTFLGLSAAK-FRQL---DL-LPVAHLHLSCILLD 177 (562)
T ss_dssp C--CEECSC--CCTTCSEEECCSSCCSBCCCCGGG-----GGCTTCCEEEEECSB-CCTT---TT-GGGTTSCEEEEEEE
T ss_pred C--CccCcc--ccccCCEEECCCCCccccCchHhh-----cccCcccEEecCCCc-cccC---ch-hhhhhceeeEEEee
Confidence 7 345544 7999999999999998875 444 688999999999844 5543 22 455666 999999
Q ss_pred cCCc
Q 048213 520 ECPV 523 (532)
Q Consensus 520 ~c~~ 523 (532)
+|..
T Consensus 178 ~n~l 181 (562)
T 3a79_B 178 LVSY 181 (562)
T ss_dssp ESSC
T ss_pred cccc
Confidence 8854
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=3.9e-11 Score=119.59 Aligned_cols=150 Identities=16% Similarity=0.140 Sum_probs=100.4
Q ss_pred HHhhhhcccccCCchh-hhccccccEEEeccccccC---cccccccccccE-Eeecccccccc------ccCCcceEEec
Q 048213 372 VVIDLTYMNLLSLPSS-LGLLTNLQTLCLYYCKLQD---TSVLGELKILEI-LRLRVNELTRA------GSSQLKHLSVR 440 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~-L~l~~~~l~~~------~l~~Lr~L~l~ 440 (532)
+.+++.+|.++.+|.. |..+++|++|++++|.+.+ ...+.++++|.. +.+.+|++..+ .+++|++|+++
T Consensus 33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence 4678888888888764 7888889999988887644 234566666554 44555666555 45667777777
Q ss_pred ccccc-----------------------CCC-CCcccccC-CCCCEEecCCcccccccccccccccccCCCccEEEeccC
Q 048213 441 GLRAS-----------------------APN-PTESEVAL-PKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNC 495 (532)
Q Consensus 441 ~~~~~-----------------------~~~-~~~~~~~l-~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c 495 (532)
+|... +.. .+..|..+ ..|++|+|++|.|+.+|... +...+|+.|++.++
T Consensus 113 ~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-----f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-----FNGTQLDELNLSDN 187 (350)
T ss_dssp EECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-----STTEEEEEEECTTC
T ss_pred ccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh-----ccccchhHHhhccC
Confidence 66441 000 01122333 35778888888888888776 66677888888877
Q ss_pred CCCCccchhhhhhcCCCccEEEeecCCcccccc
Q 048213 496 WNLTCLFTSSIISSFVGLQCLEICECPVLKEII 528 (532)
Q Consensus 496 ~~l~~l~p~~~~~~L~~L~~L~l~~c~~L~~i~ 528 (532)
+.++.+++..| +.+++|++|+|+++ +|+.++
T Consensus 188 n~l~~i~~~~f-~~l~~L~~LdLs~N-~l~~lp 218 (350)
T 4ay9_X 188 NNLEELPNDVF-HGASGPVILDISRT-RIHSLP 218 (350)
T ss_dssp TTCCCCCTTTT-TTEECCSEEECTTS-CCCCCC
T ss_pred CcccCCCHHHh-ccCcccchhhcCCC-CcCccC
Confidence 88888844344 77888888888876 355554
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=2.1e-12 Score=117.77 Aligned_cols=129 Identities=18% Similarity=0.207 Sum_probs=105.6
Q ss_pred ccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc-----ccCCcceEEeccccccCCCCCccccc
Q 048213 381 LLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLRASAPNPTESEVA 455 (532)
Q Consensus 381 l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~~~~~~~~~~~~~ 455 (532)
+..+|..++.+++|++|++++|.+..++.+.++++|++|++++|.+..+ .+++|++|++++|.+ ...+ .+..
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l--~~l~-~~~~ 113 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI--ASLS-GIEK 113 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC--CCHH-HHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC--CcCC-cccc
Confidence 3445668999999999999999999966999999999999999998877 458999999999976 3344 6889
Q ss_pred CCCCCEEecCCcccccccc--cccccccccCCCccEEEeccCCCCCccchh---------hhhhcCCCccEEEe
Q 048213 456 LPKLETVCLSSINIERIWQ--NQVAAMSCGIQNLKRLILFNCWNLTCLFTS---------SIISSFVGLQCLEI 518 (532)
Q Consensus 456 l~~L~~L~L~~~~l~~lp~--~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~---------~~~~~L~~L~~L~l 518 (532)
+++|++|++++|.++.+|. .+ ..+++|++|++++|+ +....|. ..+..+++|++|+-
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l-----~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKL-----AALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHH-----TTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred CCCCCEEECCCCcCCchhHHHHH-----hcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEECC
Confidence 9999999999999998765 33 578999999999865 4333232 22378999999973
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.15 E-value=4.4e-10 Score=113.41 Aligned_cols=219 Identities=13% Similarity=0.042 Sum_probs=129.8
Q ss_pred ccccccchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHhhcc----C---CCCEEEEecc----C---
Q 048213 105 YEAFESRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENE----K---LFDRVIFVEE----S--- 166 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~---~F~~~~~~~~----~--- 166 (532)
+..|+||+++++++.+++. ....+.+.|+|++|+|||+||+.+++..... . .+........ +
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 3679999999999987775 3456789999999999999999999875322 0 1222222111 1
Q ss_pred --------------------chhhHHHHHHHHhccCcEEEEEcCCCCccc--cccc-ccccCCCCCCeEEEEeecChHHh
Q 048213 167 --------------------ESGRARSLCNRLKKEKMILVILDNIWENLD--FHAV-GIPHGDDHKGCKVLLTARSLDVL 223 (532)
Q Consensus 167 --------------------~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l-~~~~~~~~~gs~ilvTtr~~~v~ 223 (532)
.......+.+.+.. ++.+|||||++.... +..+ ...+.....+..+|+||+.....
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 11223444455553 445999999986532 1122 12221112678889998875321
Q ss_pred ----hhc-CCCCceEEccCCCHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHHcC---CchH-HHHHHHHHH--c---cC
Q 048213 224 ----SRK-MDSQQDFWVGVLKEDEAWSLFKKMAG-DYIEGSEFKWVAKDVAKKCA---GLPV-SIVTVARAL--R---NK 288 (532)
Q Consensus 224 ----~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~-~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~l--~---~~ 288 (532)
... ......+.+.+++.++..++|...+. ......-.++..+.+++.|+ |.|. |+..+-... + ..
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 000 11123899999999999999998753 11111122345677778887 8876 444433332 1 12
Q ss_pred -ChHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhcCCCCCchHHHHHHHHh
Q 048213 289 -RLFDWKDALEQLRWPSSTNFKDIQPTAYKAIELSYVKLDGDELKNIFLLIG 339 (532)
Q Consensus 289 -~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~f~~la 339 (532)
+.+.+..++.... ...+.-++..|+++ .+..+..++
T Consensus 258 i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~ 294 (384)
T 2qby_B 258 IRKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLI 294 (384)
T ss_dssp CCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHH
Confidence 6677766665543 12345566778776 455444444
No 124
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.15 E-value=1.9e-11 Score=119.75 Aligned_cols=140 Identities=15% Similarity=0.082 Sum_probs=103.0
Q ss_pred hHHhhhhcccccCC-c----hhhhccccccEEEeccccccC--cccccccccccEEeeccccccc---c-------ccCC
Q 048213 371 RVVIDLTYMNLLSL-P----SSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTR---A-------GSSQ 433 (532)
Q Consensus 371 ~~~l~l~~~~l~~l-p----~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~---~-------~l~~ 433 (532)
.+.+++.+|.+... | ..+..+++|++|++++|.+.. +..+..+++|++|++++|++.. + .+++
T Consensus 119 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 198 (310)
T 4glp_A 119 LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA 198 (310)
T ss_dssp CSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC
T ss_pred CCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC
Confidence 45678888877652 2 234568888999998888877 3567888899999999887643 1 5778
Q ss_pred cceEEeccccccCCCCCc----ccccCCCCCEEecCCcccccc-cccccccccccC---CCccEEEeccCCCCCccchhh
Q 048213 434 LKHLSVRGLRASAPNPTE----SEVALPKLETVCLSSINIERI-WQNQVAAMSCGI---QNLKRLILFNCWNLTCLFTSS 505 (532)
Q Consensus 434 Lr~L~l~~~~~~~~~~~~----~~~~l~~L~~L~L~~~~l~~l-p~~~~~~~~~~L---~~L~~L~L~~c~~l~~l~p~~ 505 (532)
|++|++++|+. ...+. .+.++++|++|+|++|.++.+ |+.+ +.+ ++|++|+|++| .++.+ |..
T Consensus 199 L~~L~Ls~N~l--~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~~~~~~~L~~L~Ls~N-~l~~l-p~~ 269 (310)
T 4glp_A 199 IQNLALRNTGM--ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-----PRCMWSSALNSLNLSFA-GLEQV-PKG 269 (310)
T ss_dssp CCSCBCCSSCC--CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-----SSCCCCTTCCCEECCSS-CCCSC-CSC
T ss_pred CCEEECCCCCC--CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-----HhccCcCcCCEEECCCC-CCCch-hhh
Confidence 89999988866 22222 246788999999999988876 5555 443 68999999874 57788 665
Q ss_pred hhhcCCCccEEEeecCC
Q 048213 506 IISSFVGLQCLEICECP 522 (532)
Q Consensus 506 ~~~~L~~L~~L~l~~c~ 522 (532)
+ .++|++|+|++|.
T Consensus 270 ~---~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 270 L---PAKLRVLDLSSNR 283 (310)
T ss_dssp C---CSCCSCEECCSCC
T ss_pred h---cCCCCEEECCCCc
Confidence 4 3789999998874
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.14 E-value=9.9e-10 Score=110.68 Aligned_cols=220 Identities=16% Similarity=0.123 Sum_probs=129.0
Q ss_pred ccccccchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHhhccC--CCCEEEEecc-------------
Q 048213 105 YEAFESRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK--LFDRVIFVEE------------- 165 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~~~~~------------- 165 (532)
+..|+||+.+++.+.+++. ......+.|+|++|+||||||+.+++...... .+........
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999887 44567899999999999999999998754321 1222221100
Q ss_pred ------------CchhhHHHHHHHHhc-cCcEEEEEcCCCCccc------ccccccccCC-CCCCeEEEEeecChHHhhh
Q 048213 166 ------------SESGRARSLCNRLKK-EKMILVILDNIWENLD------FHAVGIPHGD-DHKGCKVLLTARSLDVLSR 225 (532)
Q Consensus 166 ------------~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~------~~~l~~~~~~-~~~gs~ilvTtr~~~v~~~ 225 (532)
+.......+.+.+.. +++.+||+|+++.... +..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 112234445555543 3489999999976431 2222111111 2345667888886643211
Q ss_pred cC-----CC-CceEEccCCCHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHcC---CchHHHHH-HHHHHc-----c--
Q 048213 226 KM-----DS-QQDFWVGVLKEDEAWSLFKKMAGD-YIEGSEFKWVAKDVAKKCA---GLPVSIVT-VARALR-----N-- 287 (532)
Q Consensus 226 ~~-----~~-~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPLai~~-~~~~l~-----~-- 287 (532)
.. .. ...+.+.+++.++..+++...+.. .....-..+..+.+++.++ |.|..+.. +..... +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 10 11 147999999999999999886431 1111223556777777777 98874433 332211 1
Q ss_pred C-ChHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhcCCCCCchHHHHHHHHh
Q 048213 288 K-RLFDWKDALEQLRWPSSTNFKDIQPTAYKAIELSYVKLDGDELKNIFLLIG 339 (532)
Q Consensus 288 ~-~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~f~~la 339 (532)
. +.+.+..++.... ...+.-++..+|.. .+..+..++
T Consensus 259 ~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~il~ai~ 296 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE--------------RDRVRDIILTLPFH-SKLVLMAVV 296 (386)
T ss_dssp SCCHHHHHHHHHHHH--------------HHHHHHHHHTSCHH-HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHH
Confidence 1 4555555444332 12344456677776 555555554
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=1.2e-10 Score=103.88 Aligned_cols=122 Identities=19% Similarity=0.124 Sum_probs=98.0
Q ss_pred ccEEEeccccccCcccccccccccEEeecccccccc------ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCc
Q 048213 394 LQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSI 467 (532)
Q Consensus 394 L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 467 (532)
.+.+++.++.+..++ ....++|++|++++|++..+ .+++|++|++++|.+ ....+..+..+++|++|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCC
Confidence 567888888887733 22347899999999998876 578999999999987 3334445789999999999999
Q ss_pred ccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCc
Q 048213 468 NIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPV 523 (532)
Q Consensus 468 ~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~ 523 (532)
.++.+|...+ ..+++|++|+|+++ .++.+++..+ +.+++|++|++++++-
T Consensus 87 ~l~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 87 KLQSLPNGVF----DKLTQLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCCTTTT----TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred CccccCHHHh----hCCcccCEEECcCC-cceEeCHHHh-cCCcccCEEEecCCCe
Confidence 9999887652 46899999999985 6888944444 7899999999999873
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=2e-11 Score=133.31 Aligned_cols=105 Identities=18% Similarity=0.150 Sum_probs=83.8
Q ss_pred hhHHhhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEeecccccccc-----ccCCcceEEecccc
Q 048213 370 ARVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLR 443 (532)
Q Consensus 370 ~~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~ 443 (532)
..+.|++.+|.+..+|..+..+++|++|+|++|.+.. |..++++++|++|+|++|.++.+ .+++|++|+|++|.
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC
T ss_pred CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC
Confidence 3467788888888888888888888888888888877 56688888888888888888766 56788888888887
Q ss_pred ccCCCCCcccccCCCCCEEecCCcccccccccc
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIERIWQNQ 476 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~ 476 (532)
+ ..+|..|+++++|++|+|++|.|+..++..
T Consensus 305 l--~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 305 V--TTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp C--CCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred C--CccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 6 567777888888888888888887655544
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1e-10 Score=123.77 Aligned_cols=119 Identities=20% Similarity=0.200 Sum_probs=102.3
Q ss_pred hHHhhhhcccccCCchhhhccccccEEEeccccccC-cccccccccccEEeecccccccc----ccCCcceEEecccccc
Q 048213 371 RVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRAS 445 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~ 445 (532)
.+.+++++|.++.+|. ++.+++|++|++++|.+.. |..++++++|++|+|++|.++++ .+++|++|+|++|++
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l- 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL- 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC-
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC-
Confidence 4578999999999997 9999999999999999998 67899999999999999998887 688999999999987
Q ss_pred CCCC-CcccccCCCCCEEecCCcccccccccccccccccCCCccEEEe
Q 048213 446 APNP-TESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLIL 492 (532)
Q Consensus 446 ~~~~-~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L 492 (532)
.... |..++.+++|++|+|++|.++.+|+... .....+++|++|++
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~-~l~~~lp~L~~L~l 567 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE-RLAEMLPSVSSILT 567 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT-HHHHHCTTCSEEEC
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH-HHHHHCcccCccCC
Confidence 3333 8899999999999999999999887541 11123789999875
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.12 E-value=1.5e-10 Score=119.52 Aligned_cols=133 Identities=15% Similarity=0.116 Sum_probs=86.4
Q ss_pred hHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc--ccCCcceEEeccccccCCC
Q 048213 371 RVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA--GSSQLKHLSVRGLRASAPN 448 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~--~l~~Lr~L~l~~~~~~~~~ 448 (532)
.+.+++.+|.+..+|.. .++|++|++++|.+..++.++++++|++|++++|+++.+ ..++|++|++++|.. ..
T Consensus 113 L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l--~~ 187 (454)
T 1jl5_A 113 LKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL--EE 187 (454)
T ss_dssp CCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC--SS
T ss_pred CcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcC--Cc
Confidence 34556666666555432 157777888777777755677788888888888877765 345788888887765 33
Q ss_pred CCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 449 PTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 449 ~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
.| .++++++|++|++++|.++.+|... .+|++|++++| .+..+ |. + +.+++|++|++++|
T Consensus 188 l~-~~~~l~~L~~L~l~~N~l~~l~~~~--------~~L~~L~l~~n-~l~~l-p~-~-~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 188 LP-ELQNLPFLTAIYADNNSLKKLPDLP--------LSLESIVAGNN-ILEEL-PE-L-QNLPFLTTIYADNN 247 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSSCCCCC--------TTCCEEECCSS-CCSSC-CC-C-TTCTTCCEEECCSS
T ss_pred Cc-cccCCCCCCEEECCCCcCCcCCCCc--------CcccEEECcCC-cCCcc-cc-c-CCCCCCCEEECCCC
Confidence 44 5777777777777777777665532 45666666654 35555 32 3 56666666666655
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.11 E-value=1.9e-10 Score=122.72 Aligned_cols=115 Identities=23% Similarity=0.169 Sum_probs=84.8
Q ss_pred ccccEEEeccccccCcccccccccccEEeecccccccc--ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCccc
Q 048213 392 TNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA--GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINI 469 (532)
Q Consensus 392 ~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~--~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 469 (532)
++|++|++++|.+..++. .+++|+.|++++|.++.+ .+++|+.|++++|.+ ...| ..+++|++|+|++|.|
T Consensus 181 ~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L--~~lp---~~l~~L~~L~Ls~N~L 253 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL--TSLP---VLPSELKELMVSGNRL 253 (622)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC--SCCC---CCCTTCCEEECCSSCC
T ss_pred CCCcEEECCCCCCCCCCC--ccchhhEEECcCCcccccCCCCCCCCEEEccCCcc--CcCC---CCCCcCcEEECCCCCC
Confidence 566666776666665332 235667777777766665 446788888888865 3344 4568899999999988
Q ss_pred ccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCcc
Q 048213 470 ERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPVL 524 (532)
Q Consensus 470 ~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L 524 (532)
+.+|.. +++|++|+|++| .+..+ |..+ +++++|+.|+|++|+--
T Consensus 254 ~~lp~~--------~~~L~~L~Ls~N-~L~~l-p~~l-~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 254 TSLPML--------PSGLLSLSVYRN-QLTRL-PESL-IHLSSETTVNLEGNPLS 297 (622)
T ss_dssp SCCCCC--------CTTCCEEECCSS-CCCSC-CGGG-GGSCTTCEEECCSCCCC
T ss_pred CcCCcc--------cccCcEEeCCCC-CCCcC-CHHH-hhccccCEEEecCCCCC
Confidence 887762 388999999985 58889 7776 79999999999998743
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.10 E-value=3.3e-11 Score=121.81 Aligned_cols=149 Identities=15% Similarity=0.097 Sum_probs=91.7
Q ss_pred hHHhhhhcccccC-----Cchhhhcc---------ccccEEEeccccccC--c----ccccccccccEEeeccccccc--
Q 048213 371 RVVIDLTYMNLLS-----LPSSLGLL---------TNLQTLCLYYCKLQD--T----SVLGELKILEILRLRVNELTR-- 428 (532)
Q Consensus 371 ~~~l~l~~~~l~~-----lp~~~~~l---------~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~~-- 428 (532)
.+.+++.+|.+.. ++..+..+ ++|++|++++|.+.. . ..+..+++|++|++++|.+..
T Consensus 124 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g 203 (386)
T 2ca6_A 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred CCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhH
Confidence 3556666666642 23333444 677777777777653 2 245567777777777777662
Q ss_pred --------c-ccCCcceEEeccccccC----CCCCcccccCCCCCEEecCCccccccccccccccc--ccCCCccEEEec
Q 048213 429 --------A-GSSQLKHLSVRGLRASA----PNPTESEVALPKLETVCLSSINIERIWQNQVAAMS--CGIQNLKRLILF 493 (532)
Q Consensus 429 --------~-~l~~Lr~L~l~~~~~~~----~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~--~~L~~L~~L~L~ 493 (532)
+ .+++|++|+|++|.+ . ...+..+..+++|++|+|++|.++......++... +++++|++|+|+
T Consensus 204 ~~~l~~~~l~~~~~L~~L~Ls~n~l-~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 204 IEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp HHHHHHTTGGGCTTCCEEECCSSCC-HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred HHHHHHHHhhcCCCccEEECcCCCC-CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence 1 566777777777754 1 23345567777788888888776643111111111 226788888888
Q ss_pred cCCCCCc-----cchhhhhhcCCCccEEEeecCC
Q 048213 494 NCWNLTC-----LFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 494 ~c~~l~~-----l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
+|. +.. + |..+.+++++|++|++++|+
T Consensus 283 ~n~-i~~~g~~~l-~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 283 YNE-IELDAVRTL-KTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SSC-CBHHHHHHH-HHHHHHHCTTCCEEECTTSB
T ss_pred CCc-CCHHHHHHH-HHHHHhcCCCceEEEccCCc
Confidence 755 554 6 55554567888888888775
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.09 E-value=2.2e-10 Score=122.30 Aligned_cols=67 Identities=24% Similarity=0.220 Sum_probs=32.9
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc--ccCCcceEEecccc
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA--GSSQLKHLSVRGLR 443 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~--~l~~Lr~L~l~~~~ 443 (532)
.+++.++.+..+|..+. ++|++|++++|.+..++. .+++|++|++++|+++.+ .+++|++|++++|.
T Consensus 44 ~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 112 (622)
T ss_dssp EEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCC
T ss_pred EEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCc
Confidence 34555555555554443 455555555555544322 344555555555554444 34445555554443
No 133
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=3e-10 Score=119.79 Aligned_cols=133 Identities=20% Similarity=0.153 Sum_probs=83.8
Q ss_pred hHHhhhhcccccCCchhhhccccccEEEeccccccCcccccccccccEEeecccccccc--ccCCcceEEeccccccCCC
Q 048213 371 RVVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA--GSSQLKHLSVRGLRASAPN 448 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~--~l~~Lr~L~l~~~~~~~~~ 448 (532)
.+.+++.+|.+..+| ..+++|++|++++|.+..++.+.+ +|++|++++|+++.+ .+++|++|++++|.+ ..
T Consensus 82 L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l--~~ 154 (571)
T 3cvr_A 82 ITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQL--TM 154 (571)
T ss_dssp CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCC--SC
T ss_pred CCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCcc--Cc
Confidence 345666666666666 345667777777776666333433 677777777766655 456677777777765 33
Q ss_pred CCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCc-------cEEEeecC
Q 048213 449 PTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGL-------QCLEICEC 521 (532)
Q Consensus 449 ~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L-------~~L~l~~c 521 (532)
.|. .+++|++|+|++|.|+.+|. + . ++|++|+|++| .++.+ |. + .. +| ++|+|++|
T Consensus 155 lp~---~l~~L~~L~Ls~N~L~~lp~-l-----~--~~L~~L~Ls~N-~L~~l-p~-~-~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 155 LPE---LPTSLEVLSVRNNQLTFLPE-L-----P--ESLEALDVSTN-LLESL-PA-V-PV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCC-C-----C--TTCCEEECCSS-CCSSC-CC-C-C----------CCEEEECCSS
T ss_pred CCC---cCCCcCEEECCCCCCCCcch-h-----h--CCCCEEECcCC-CCCch-hh-H-HH--hhhcccccceEEecCCC
Confidence 333 45677777777777777766 4 3 77888888864 47777 44 4 32 56 88888776
Q ss_pred Ccccccc
Q 048213 522 PVLKEII 528 (532)
Q Consensus 522 ~~L~~i~ 528 (532)
. |+.|+
T Consensus 218 ~-l~~lp 223 (571)
T 3cvr_A 218 R-ITHIP 223 (571)
T ss_dssp C-CCCCC
T ss_pred c-ceecC
Confidence 3 44443
No 134
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=8.3e-10 Score=108.46 Aligned_cols=178 Identities=12% Similarity=0.012 Sum_probs=114.1
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEeccC--chhhHHHHHHHHh--
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEES--ESGRARSLCNRLK-- 179 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~~--~~~~~~~l~~~l~-- 179 (532)
...++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++...... .+........+ ..+....+.+.+.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQK 99 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhc
Confidence 457999999999999999877666699999999999999999998742211 12222122211 1122222223222
Q ss_pred -----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChHHh-hhcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 180 -----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLDVL-SRKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 180 -----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
.+++.++|+||++.. ..++.+...+.....++.+|+||+...-. .........+.+.+++.++..+++...+
T Consensus 100 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 100 KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHH
Confidence 345899999999864 33444443333334567888888764321 1112223489999999999999998865
Q ss_pred CCCCCCcchHHHHHHHHHHcCCchHH-HHHHHH
Q 048213 252 GDYIEGSEFKWVAKDVAKKCAGLPVS-IVTVAR 283 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~~~ 283 (532)
.... ..-.++....|++.|+|.|.. +..+..
T Consensus 180 ~~~~-~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 180 KLED-VKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHT-CCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4111 112256678999999999954 444443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=1.2e-11 Score=112.62 Aligned_cols=106 Identities=21% Similarity=0.211 Sum_probs=89.7
Q ss_pred cccccccccEEeecccccccc----ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccC
Q 048213 409 VLGELKILEILRLRVNELTRA----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGI 484 (532)
Q Consensus 409 ~i~~l~~L~~L~l~~~~l~~~----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L 484 (532)
.+.++++|++|++++|.+..+ .+++|++|++++|.+ ...|..+..+++|++|++++|.++.+| .+ ..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l--~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-----~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIASLS-GI-----EKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEE--CSCSSHHHHHHHCSEEEEEEEECCCHH-HH-----HHH
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCc--ccccchhhcCCcCCEEECcCCcCCcCC-cc-----ccC
Confidence 789999999999999988877 678999999999987 467777788899999999999999887 34 577
Q ss_pred CCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCc
Q 048213 485 QNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPV 523 (532)
Q Consensus 485 ~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~ 523 (532)
++|++|+|++| .+..+++...++.+++|++|++++|+-
T Consensus 115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 99999999985 478774323337999999999999863
No 136
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.02 E-value=1.2e-10 Score=120.11 Aligned_cols=143 Identities=21% Similarity=0.144 Sum_probs=96.6
Q ss_pred HHHHHhhHHhhhhccccc-CCchhhhccccc-------------cEEEeccccccCcccccccccccEEeecccccccc-
Q 048213 365 MEVARARVVIDLTYMNLL-SLPSSLGLLTNL-------------QTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA- 429 (532)
Q Consensus 365 ~~~~~~~~~l~l~~~~l~-~lp~~~~~l~~L-------------~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~- 429 (532)
+..+...+++++.++.+. .+|.+++.+.+| ++|++++|.+...+.+ .++|++|++++|.++++
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp 107 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELP 107 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCC
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCccc
Confidence 444555577777777765 467777776654 7777777777764433 36788888888877766
Q ss_pred -ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhh
Q 048213 430 -GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIIS 508 (532)
Q Consensus 430 -~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~ 508 (532)
.+++|++|++++|.. ...+.. .++|++|++++|.++.+| ++ .++++|++|++++| .++.+ |..
T Consensus 108 ~~~~~L~~L~l~~n~l--~~l~~~---~~~L~~L~L~~n~l~~lp-~~-----~~l~~L~~L~l~~N-~l~~l-p~~--- 171 (454)
T 1jl5_A 108 ELPQSLKSLLVDNNNL--KALSDL---PPLLEYLGVSNNQLEKLP-EL-----QNSSFLKIIDVDNN-SLKKL-PDL--- 171 (454)
T ss_dssp CCCTTCCEEECCSSCC--SCCCSC---CTTCCEEECCSSCCSSCC-CC-----TTCTTCCEEECCSS-CCSCC-CCC---
T ss_pred cccCCCcEEECCCCcc--CcccCC---CCCCCEEECcCCCCCCCc-cc-----CCCCCCCEEECCCC-cCccc-CCC---
Confidence 346788888888865 222211 158888999988888877 34 67888999999875 46777 543
Q ss_pred cCCCccEEEeecCCccccc
Q 048213 509 SFVGLQCLEICECPVLKEI 527 (532)
Q Consensus 509 ~L~~L~~L~l~~c~~L~~i 527 (532)
.++|++|++++|. ++.+
T Consensus 172 -~~~L~~L~L~~n~-l~~l 188 (454)
T 1jl5_A 172 -PPSLEFIAAGNNQ-LEEL 188 (454)
T ss_dssp -CTTCCEEECCSSC-CSSC
T ss_pred -cccccEEECcCCc-CCcC
Confidence 3588889888873 4443
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.02 E-value=9.2e-11 Score=118.57 Aligned_cols=146 Identities=20% Similarity=0.118 Sum_probs=105.7
Q ss_pred hhHHhhhhcccccC-----CchhhhccccccEEEeccccccC--cc----ccccc---------ccccEEeecccccccc
Q 048213 370 ARVVIDLTYMNLLS-----LPSSLGLLTNLQTLCLYYCKLQD--TS----VLGEL---------KILEILRLRVNELTRA 429 (532)
Q Consensus 370 ~~~~l~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~l~~--~~----~i~~l---------~~L~~L~l~~~~l~~~ 429 (532)
..+.+++++|.+.. +|..+..+++|++|++++|.+.. +. .+..+ ++|++|++++|.+...
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 33677888888866 67778888999999999988764 22 23344 8899999999888632
Q ss_pred ----------ccCCcceEEeccccccCC-----CCCcccccCCCCCEEecCCccc-----ccccccccccccccCCCccE
Q 048213 430 ----------GSSQLKHLSVRGLRASAP-----NPTESEVALPKLETVCLSSINI-----ERIWQNQVAAMSCGIQNLKR 489 (532)
Q Consensus 430 ----------~l~~Lr~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~l-----~~lp~~~~~~~~~~L~~L~~ 489 (532)
.+++|++|++++|++ .. ..+..+..+++|++|+|++|.+ ..+|..+ ..+++|++
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l-~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l-----~~~~~L~~ 248 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-----KSWPNLRE 248 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCC-CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-----GGCTTCCE
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCC-CHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH-----ccCCCcCE
Confidence 567899999999865 11 1223677889999999999987 4566655 67789999
Q ss_pred EEeccCCCCCccc----hhhhh-hcCCCccEEEeecCC
Q 048213 490 LILFNCWNLTCLF----TSSII-SSFVGLQCLEICECP 522 (532)
Q Consensus 490 L~L~~c~~l~~l~----p~~~~-~~L~~L~~L~l~~c~ 522 (532)
|+|++|. +.... +..+. +.+++|++|+|++|.
T Consensus 249 L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 249 LGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp EECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred EECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 9999876 54431 33331 238899999999886
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=1.2e-09 Score=96.77 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=37.4
Q ss_pred CcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCC
Q 048213 433 QLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVG 512 (532)
Q Consensus 433 ~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~ 512 (532)
+|++|+|++|.+ ....+..|.++++|++|+|++|.|+.+|+..+ ..+++|++|+|++ +.+..+++..+ +.+++
T Consensus 31 ~l~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f----~~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~ 103 (170)
T 3g39_A 31 TTQVLYLYDNQI-TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF----DKLTQLTQLSLND-NQLKSIPRGAF-DNLKS 103 (170)
T ss_dssp TCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECCS-SCCCCCCTTTT-TTCTT
T ss_pred CCcEEEcCCCcC-CccChhhhcCcccCCEEECCCCCcCccChhhc----cCCCCCCEEECCC-CccCEeCHHHh-cCCCC
Confidence 344444444443 22223344455555555555555555444431 2345555555554 23444422223 44555
Q ss_pred ccEEEeecC
Q 048213 513 LQCLEICEC 521 (532)
Q Consensus 513 L~~L~l~~c 521 (532)
|++|+|+++
T Consensus 104 L~~L~L~~N 112 (170)
T 3g39_A 104 LTHIWLLNN 112 (170)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeCCC
Confidence 555555544
No 139
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.00 E-value=3.2e-09 Score=107.00 Aligned_cols=220 Identities=15% Similarity=0.092 Sum_probs=127.1
Q ss_pred ccccccchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHhhccC-----CCCEEEEeccC---------
Q 048213 105 YEAFESRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-----LFDRVIFVEES--------- 166 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-----~F~~~~~~~~~--------- 166 (532)
+..|+||+.+++++..++. ....+.+.|+|++|+||||+|+.+++...... .+.........
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3679999999999999884 34567899999999999999999998753210 12222211110
Q ss_pred ----------------chhhHHHHHHHHh-ccCcEEEEEcCCCCcccc----ccc---ccccCCC--CCCeEEEEeecCh
Q 048213 167 ----------------ESGRARSLCNRLK-KEKMILVILDNIWENLDF----HAV---GIPHGDD--HKGCKVLLTARSL 220 (532)
Q Consensus 167 ----------------~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~~----~~l---~~~~~~~--~~gs~ilvTtr~~ 220 (532)
.......+.+.+. .+++.+||||+++..... +.+ ....... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 1222344555553 246889999999865321 222 1111111 3456777777765
Q ss_pred HHh----hh-cCCCC-ceEEccCCCHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHcC---CchH-HHHHHHHHHc---
Q 048213 221 DVL----SR-KMDSQ-QDFWVGVLKEDEAWSLFKKMAGD-YIEGSEFKWVAKDVAKKCA---GLPV-SIVTVARALR--- 286 (532)
Q Consensus 221 ~v~----~~-~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~l~--- 286 (532)
... .. ..... ..+.+.+++.++..+++...+.. .....-.++..+.+++.++ |.|. ++..+.....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 221 00 01112 47899999999999999887531 0011112345667777777 9994 3333332221
Q ss_pred --c--C-ChHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhcCCCCCchHHHHHHHHh
Q 048213 287 --N--K-RLFDWKDALEQLRWPSSTNFKDIQPTAYKAIELSYVKLDGDELKNIFLLIG 339 (532)
Q Consensus 287 --~--~-~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~f~~la 339 (532)
+ . +.+.+..++.... ...+.-++..|+.+ .+..+..++
T Consensus 258 ~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~ 300 (387)
T 2v1u_A 258 RRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIM 300 (387)
T ss_dssp HTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHH
Confidence 1 1 5666666655432 12344466778887 555555444
No 140
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.00 E-value=1.6e-10 Score=115.76 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=94.4
Q ss_pred hhHHhhhhcccccCC-chhhhcc-----ccccEEEeccccccC--ccc----cccc-ccccEEeecccccccc-------
Q 048213 370 ARVVIDLTYMNLLSL-PSSLGLL-----TNLQTLCLYYCKLQD--TSV----LGEL-KILEILRLRVNELTRA------- 429 (532)
Q Consensus 370 ~~~~l~l~~~~l~~l-p~~~~~l-----~~L~~L~l~~~~l~~--~~~----i~~l-~~L~~L~l~~~~l~~~------- 429 (532)
..+.+++++|.+... +..+..+ ++|++|++++|.+.+ +.. +..+ ++|++|++++|.++..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 345677777777664 4445554 778888888887765 222 3344 7788888888877665
Q ss_pred ---c-cCCcceEEeccccccCCCC----CcccccCC-CCCEEecCCcccccccccccccccccC-CCccEEEeccCCCCC
Q 048213 430 ---G-SSQLKHLSVRGLRASAPNP----TESEVALP-KLETVCLSSINIERIWQNQVAAMSCGI-QNLKRLILFNCWNLT 499 (532)
Q Consensus 430 ---~-l~~Lr~L~l~~~~~~~~~~----~~~~~~l~-~L~~L~L~~~~l~~lp~~~~~~~~~~L-~~L~~L~L~~c~~l~ 499 (532)
. .++|++|+|++|.+ .... +..+..++ +|++|+|++|.++..+...+......+ ++|++|+|++|. ++
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~ 209 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LG 209 (362)
T ss_dssp HHTTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GG
T ss_pred HHHhCCCceeEEEccCCcC-CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CC
Confidence 1 25788888888866 2222 22334454 888888888877755443221111234 488888888754 66
Q ss_pred c-----cchhhhhhc-CCCccEEEeecCC
Q 048213 500 C-----LFTSSIISS-FVGLQCLEICECP 522 (532)
Q Consensus 500 ~-----l~p~~~~~~-L~~L~~L~l~~c~ 522 (532)
. + +..+ .. .++|++|+|++|.
T Consensus 210 ~~~~~~l-~~~l-~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 210 LKSYAEL-AYIF-SSIPNHVVSLNLCLNC 236 (362)
T ss_dssp GSCHHHH-HHHH-HHSCTTCCEEECCSSC
T ss_pred hhHHHHH-HHHH-hcCCCCceEEECcCCC
Confidence 5 5 4444 34 4588888888874
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=1.4e-09 Score=96.61 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=47.5
Q ss_pred cEEEeccccccC-cccccccccccEEeeccccccccccCCcceEEeccccccCCCCCcccccCCCCCEEecCCccccccc
Q 048213 395 QTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRAGSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIW 473 (532)
Q Consensus 395 ~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp 473 (532)
+.++++++.+.. |..+. ++|++|++++|++..+ .+..|.++++|++|+|++|.|+.+|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~-------------------~~~~~~~l~~L~~L~Ls~N~l~~i~ 73 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKL-------------------EPGVFDHLVNLQQLYFNSNKLTAIP 73 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCC-------------------CTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCcccc-------------------CHHHhcCCcCCCEEECCCCCCCccC
Confidence 455555555554 22232 4555555555554443 2334445555555555555555544
Q ss_pred ccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecCC
Q 048213 474 QNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 474 ~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
..++ .++++|++|+|++ +.+..+++..+ +.+++|++|+|++++
T Consensus 74 ~~~~----~~l~~L~~L~L~~-N~l~~l~~~~~-~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 74 TGVF----DKLTQLTQLDLND-NHLKSIPRGAF-DNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTT----TTCTTCCEEECCS-SCCCCCCTTTT-TTCTTCSEEECCSSC
T ss_pred hhHh----CCcchhhEEECCC-CccceeCHHHh-ccccCCCEEEeCCCC
Confidence 4431 2345555555554 33444422223 445555555555443
No 142
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.95 E-value=1.3e-09 Score=108.65 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=99.9
Q ss_pred hhhhcccccCCchhhhccccccEEEeccccccCc--ccccccccccEEeecccccccc-------ccCCcce-EEecccc
Q 048213 374 IDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQDT--SVLGELKILEILRLRVNELTRA-------GSSQLKH-LSVRGLR 443 (532)
Q Consensus 374 l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~~--~~i~~l~~L~~L~l~~~~l~~~-------~l~~Lr~-L~l~~~~ 443 (532)
++..+++++++|..+ .+++++|++++|+++.+ ..+.++++|++|+|++|++.+. .+++|+. +.+.+|+
T Consensus 14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 455667788999876 46899999999999983 3589999999999999987543 4666665 4455565
Q ss_pred ccCCCCCcccccCCCCCEEecCCcccccccccccc--------------------cccc-cC-CCccEEEeccCCCCCcc
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIERIWQNQVA--------------------AMSC-GI-QNLKRLILFNCWNLTCL 501 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~--------------------~~~~-~L-~~L~~L~L~~c~~l~~l 501 (532)
. ..-.+..|.++++|++|++++|.++.+|+.... ...+ .+ ..|++|+|++ +.++.+
T Consensus 92 l-~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i 169 (350)
T 4ay9_X 92 L-LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEI 169 (350)
T ss_dssp C-CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEE
T ss_pred c-cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCC
Confidence 5 344567789999999999999999887764310 0000 11 2355555554 335555
Q ss_pred chhhhhhcCCCccEEEeecCCcccccc
Q 048213 502 FTSSIISSFVGLQCLEICECPVLKEII 528 (532)
Q Consensus 502 ~p~~~~~~L~~L~~L~l~~c~~L~~i~ 528 (532)
|... ....+|++|++++++.++.|.
T Consensus 170 -~~~~-f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 170 -HNSA-FNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp -CTTS-STTEEEEEEECTTCTTCCCCC
T ss_pred -Chhh-ccccchhHHhhccCCcccCCC
Confidence 3322 134556666666666666554
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.94 E-value=3.8e-10 Score=113.01 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=104.9
Q ss_pred hHHhhhhcccccCCc-----hhhhccc-cccEEEeccccccC--ccccccc-----ccccEEeecccccccc--------
Q 048213 371 RVVIDLTYMNLLSLP-----SSLGLLT-NLQTLCLYYCKLQD--TSVLGEL-----KILEILRLRVNELTRA-------- 429 (532)
Q Consensus 371 ~~~l~l~~~~l~~lp-----~~~~~l~-~L~~L~l~~~~l~~--~~~i~~l-----~~L~~L~l~~~~l~~~-------- 429 (532)
.+.+++++|.+...+ ..+..++ +|++|++++|.+.+ +..+..+ ++|++|++++|.++..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 356788888887765 4577788 89999999998877 4455554 8999999999988765
Q ss_pred --cc-CCcceEEeccccccCCCCCccc----ccC-CCCCEEecCCcccccccccccccccccCC-CccEEEeccCCCCCc
Q 048213 430 --GS-SQLKHLSVRGLRASAPNPTESE----VAL-PKLETVCLSSINIERIWQNQVAAMSCGIQ-NLKRLILFNCWNLTC 500 (532)
Q Consensus 430 --~l-~~Lr~L~l~~~~~~~~~~~~~~----~~l-~~L~~L~L~~~~l~~lp~~~~~~~~~~L~-~L~~L~L~~c~~l~~ 500 (532)
.+ ++|++|++++|.+ ....+..+ ..+ ++|++|+|++|.++......++.....++ +|++|+|++|. ++.
T Consensus 104 l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~ 181 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LAS 181 (362)
T ss_dssp HHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGG
T ss_pred HHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-Cch
Confidence 23 7899999999977 33333332 332 58999999999887322221111113444 89999999865 665
Q ss_pred cchhhhh---hcC-CCccEEEeecCC
Q 048213 501 LFTSSII---SSF-VGLQCLEICECP 522 (532)
Q Consensus 501 l~p~~~~---~~L-~~L~~L~l~~c~ 522 (532)
..+..+. ..+ ++|++|+|++|.
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 5454331 344 599999999886
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=1.6e-09 Score=96.32 Aligned_cols=100 Identities=20% Similarity=0.232 Sum_probs=76.7
Q ss_pred HHhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecccc
Q 048213 372 VVIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLR 443 (532)
Q Consensus 372 ~~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~ 443 (532)
..+++.++.+..+|..+. ++|++|++++|.+.. +..+.++++|++|+|++|+++.+ .+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 357888889999998764 899999999999988 45688999999999999988776 45677777777776
Q ss_pred ccCCCCCc-ccccCCCCCEEecCCccccccccc
Q 048213 444 ASAPNPTE-SEVALPKLETVCLSSINIERIWQN 475 (532)
Q Consensus 444 ~~~~~~~~-~~~~l~~L~~L~L~~~~l~~lp~~ 475 (532)
+ ...+. .+..+++|++|+|++|.+...|..
T Consensus 93 l--~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 93 L--KSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp C--CCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred c--ceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 5 33333 467777777777777777665543
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=2.1e-09 Score=95.20 Aligned_cols=97 Identities=26% Similarity=0.279 Sum_probs=56.2
Q ss_pred HhhhhcccccCCchhhhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEeccccc
Q 048213 373 VIDLTYMNLLSLPSSLGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRA 444 (532)
Q Consensus 373 ~l~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~ 444 (532)
.++++++.+..+|..+. ++|++|++++|.+.. +..+..+++|++|+|++|+++.+ .+++|++|+|++|++
T Consensus 13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 35666666767776553 667777777777766 33466677777777776666554 345555555555544
Q ss_pred cCCCCCcccccCCCCCEEecCCcccccc
Q 048213 445 SAPNPTESEVALPKLETVCLSSINIERI 472 (532)
Q Consensus 445 ~~~~~~~~~~~l~~L~~L~L~~~~l~~l 472 (532)
....+..+.++++|++|+|++|.+...
T Consensus 91 -~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 91 -KSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp -CCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred -CEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 222222355555555555555544433
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=5.2e-09 Score=102.94 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=113.8
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEeccCc---hhhHHHHHHHHh-
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEESE---SGRARSLCNRLK- 179 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~~~---~~~~~~l~~~l~- 179 (532)
...++|+++.++.+.+++..+..+.+.++|++|+||||+|+.+++...... .+........+. ......+.+...
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 103 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHS
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhh
Confidence 356899999999999998877666699999999999999999998743211 011111221111 111122222221
Q ss_pred ----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChHHh-hhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 180 ----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLDVL-SRKMDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 180 ----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
.+++.++|+||++.. ..++.+...+.....++++|+||...... .........+.+.+++.++..+++...+.
T Consensus 104 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 104 KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence 146789999999865 33444433333334577888888765321 11111224789999999999999988764
Q ss_pred CCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 048213 253 DYIEGSEFKWVAKDVAKKCAGLPVSIVTVARAL 285 (532)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 285 (532)
... ..-..+....|++.++|.|..+..+...+
T Consensus 184 ~~~-~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 184 NEG-LELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TTT-CEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcC-CCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 221 11235677889999999998665544433
No 147
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.82 E-value=2.7e-09 Score=87.08 Aligned_cols=45 Identities=9% Similarity=-0.023 Sum_probs=39.6
Q ss_pred ccccccchhhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048213 4 SKESEVDEPKRRE-EEIEEYVEKCRASVNDVIDEAEKFIGVDARAN 48 (532)
Q Consensus 4 r~q~~l~~a~~~~-~~~~~~~~~Wl~~l~~~ayd~ed~ld~~~~~~ 48 (532)
.||++|.||+.+. ...+++++.|++++|++|||+||+||+|.+..
T Consensus 37 ~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 37 SMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999998873 35789999999999999999999999997643
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.79 E-value=5.1e-08 Score=98.24 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=108.5
Q ss_pred cccccchHHHHHHHHHhcC----CCce--EEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccC-------------
Q 048213 106 EAFESRMSTFNDILNALKS----PDVN--MLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEES------------- 166 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~----~~~~--vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~------------- 166 (532)
..++||+.+++++..++.. .... .+.|+|++|+||||||+.+++.......+.........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 6799999999999988863 3334 89999999999999999999876543123322211111
Q ss_pred ------------chhhHHHHHHHHh-ccCcEEEEEcCCCCc--ccccccccccCC-CC---CCeEEEEeecChHHhhhcC
Q 048213 167 ------------ESGRARSLCNRLK-KEKMILVILDNIWEN--LDFHAVGIPHGD-DH---KGCKVLLTARSLDVLSRKM 227 (532)
Q Consensus 167 ------------~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~l~~~~~~-~~---~gs~ilvTtr~~~v~~~~~ 227 (532)
.......+.+.+. .+++.+||+|+++.. .....+...+.. .. .+..+|++|+.........
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 1112233333333 246789999999875 223333222211 11 4677888887764332111
Q ss_pred C------CCceEEccCCCHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHc---------CCchHHHHHH
Q 048213 228 D------SQQDFWVGVLKEDEAWSLFKKMAGD-YIEGSEFKWVAKDVAKKC---------AGLPVSIVTV 281 (532)
Q Consensus 228 ~------~~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c---------~glPLai~~~ 281 (532)
. ....+.+.+++.++..+++...+.. .....-.++....+++.+ +|.|..+..+
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 0 1136999999999999999887531 001122356778889988 7877544433
No 149
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.77 E-value=1.2e-09 Score=112.86 Aligned_cols=147 Identities=20% Similarity=0.155 Sum_probs=90.7
Q ss_pred HHhhhhcccccCC-----chh-hhccccccEEEeccccccC------cccccccccccEEeecccccccc----------
Q 048213 372 VVIDLTYMNLLSL-----PSS-LGLLTNLQTLCLYYCKLQD------TSVLGELKILEILRLRVNELTRA---------- 429 (532)
Q Consensus 372 ~~l~l~~~~l~~l-----p~~-~~~l~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~l~~~---------- 429 (532)
+.+++.+|.+... ++. +..+++|++|++++|.+.. +..+.++++|++|++++|.+...
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 4556666655331 122 2346777778877777665 23455677788888887776543
Q ss_pred -ccCCcceEEeccccccCCC----CCcccccCCCCCEEecCCcccccccccccccccc-cCCCccEEEeccCCCCC----
Q 048213 430 -GSSQLKHLSVRGLRASAPN----PTESEVALPKLETVCLSSINIERIWQNQVAAMSC-GIQNLKRLILFNCWNLT---- 499 (532)
Q Consensus 430 -~l~~Lr~L~l~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~-~L~~L~~L~L~~c~~l~---- 499 (532)
..++|++|++++|.+ ... .+..+..+++|++|+|++|.++......+..... ..++|++|+|++|. +.
T Consensus 310 ~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~ 387 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSF-TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSC 387 (461)
T ss_dssp STTCCCCEEECTTSCC-BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHH
T ss_pred cCCccceeeEcCCCCC-chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhH
Confidence 225788888888765 222 2344566788888888888766542221111001 14688888888764 55
Q ss_pred -ccchhhhhhcCCCccEEEeecCC
Q 048213 500 -CLFTSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 500 -~l~p~~~~~~L~~L~~L~l~~c~ 522 (532)
.+ |..+ ..+++|++|++++|+
T Consensus 388 ~~l-~~~l-~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 388 SSL-AATL-LANHSLRELDLSNNC 409 (461)
T ss_dssp HHH-HHHH-HHCCCCCEEECCSSS
T ss_pred HHH-HHHH-HhCCCccEEECCCCC
Confidence 45 5555 678888888888875
No 150
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.76 E-value=2.2e-09 Score=110.91 Aligned_cols=148 Identities=20% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHhhhhccccc-----CCchhhhccccccEEEeccccccC--cccc-cccc----cccEEeecccccccc----------
Q 048213 372 VVIDLTYMNLL-----SLPSSLGLLTNLQTLCLYYCKLQD--TSVL-GELK----ILEILRLRVNELTRA---------- 429 (532)
Q Consensus 372 ~~l~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~l~~--~~~i-~~l~----~L~~L~l~~~~l~~~---------- 429 (532)
+.+++.+|.+. .++..+..+++|++|++++|.+.+ +..+ ..++ +|++|++++|.+...
T Consensus 31 ~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 110 (461)
T 1z7x_W 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110 (461)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred cEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc
Confidence 44555555544 234445555555555555555443 2111 1233 455555555555421
Q ss_pred ccCCcceEEeccccccCCCCCccc-----ccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchh
Q 048213 430 GSSQLKHLSVRGLRASAPNPTESE-----VALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTS 504 (532)
Q Consensus 430 ~l~~Lr~L~l~~~~~~~~~~~~~~-----~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~ 504 (532)
.+++|++|++++|.+ ....+..+ ...++|++|+|++|.++......++.....+++|++|++++|. +....+.
T Consensus 111 ~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 188 (461)
T 1z7x_W 111 TLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVR 188 (461)
T ss_dssp SCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH
T ss_pred cCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHH
Confidence 445555555555543 11111111 1233455556555554432211111111344566666666544 3332122
Q ss_pred hhhh----cCCCccEEEeecC
Q 048213 505 SIIS----SFVGLQCLEICEC 521 (532)
Q Consensus 505 ~~~~----~L~~L~~L~l~~c 521 (532)
.+.. .+++|++|++++|
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTS
T ss_pred HHHHHHhcCCCCceEEEccCC
Confidence 2211 2446666666666
No 151
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.74 E-value=1.4e-07 Score=92.18 Aligned_cols=178 Identities=9% Similarity=-0.012 Sum_probs=112.7
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEecc---CchhhHHHHHHHH--
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEE---SESGRARSLCNRL-- 178 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~---~~~~~~~~l~~~l-- 178 (532)
...++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++...... .+........ ........+....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhc
Confidence 456899999999999988877666699999999999999999988642110 0111111111 1111112222222
Q ss_pred ---hccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChHHh-hhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 179 ---KKEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLDVL-SRKMDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 179 ---~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
..+++.++|+|+++.. ...+.+...+.....++.+|+||....-. .........+.+.+++.++..+++...+.
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 1246789999999765 33444544444344577888888765421 11122234899999999999999987764
Q ss_pred CCCCCcchHHHHHHHHHHcCCchHHHHHHHH
Q 048213 253 DYIEGSEFKWVAKDVAKKCAGLPVSIVTVAR 283 (532)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 283 (532)
.... .-..+....++..++|.+..+.....
T Consensus 176 ~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 176 KEGV-KITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TTCC-CBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2211 12356678889999999876554443
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.73 E-value=1.4e-07 Score=94.52 Aligned_cols=177 Identities=12% Similarity=0.127 Sum_probs=112.6
Q ss_pred cccccchHHHHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHhhccCC--------------------CCEEEEec
Q 048213 106 EAFESRMSTFNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKAENEKL--------------------FDRVIFVE 164 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--------------------F~~~~~~~ 164 (532)
..++|++..++.+.+++..+. ...+.|+|+.|+||||+|+.+++....... .+......
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 95 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEET
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecc
Confidence 468999999999999887554 357899999999999999999886543211 11111111
Q ss_pred c--CchhhHHHHHHHHh----ccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChHH-hhhcCCCCceEEc
Q 048213 165 E--SESGRARSLCNRLK----KEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLDV-LSRKMDSQQDFWV 235 (532)
Q Consensus 165 ~--~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~v-~~~~~~~~~~~~l 235 (532)
. ...+....+.+.+. .+++.++|+||++.. ..++.+...+.....+..+|++|....- ..........+.+
T Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~ 175 (373)
T 1jr3_A 96 ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 (373)
T ss_dssp TCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeC
Confidence 1 11123344444443 246789999999764 2344443333333446677777765432 1112223368899
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHH
Q 048213 236 GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVAR 283 (532)
Q Consensus 236 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 283 (532)
.+++.++..+++...+.... ..-..+....|++.++|.|..+..+..
T Consensus 176 ~~l~~~~~~~~l~~~~~~~~-~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 176 KALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99999999999987653111 112255678899999999987766543
No 153
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.70 E-value=1.4e-07 Score=92.48 Aligned_cols=175 Identities=11% Similarity=0.038 Sum_probs=109.1
Q ss_pred ccccccchHHHHHHHHHhc-----CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHh
Q 048213 105 YEAFESRMSTFNDILNALK-----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLK 179 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~ 179 (532)
...|+|++..++.+..++. ......+.|+|++|+|||++|+.+++..... | ..... ........+...+.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~--~--~~~~~-~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN--L--RVTSG-PAIEKPGDLAAILA 85 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC--E--EEECT-TTCCSHHHHHHHHT
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC--E--EEEec-cccCChHHHHHHHH
Confidence 4579999999988888775 2345678999999999999999999865422 2 21111 11112334444444
Q ss_pred c--cCcEEEEEcCCCCcc--cccccccccCC------------------CCCCeEEEEeecChHHh-hhcC-CCCceEEc
Q 048213 180 K--EKMILVILDNIWENL--DFHAVGIPHGD------------------DHKGCKVLLTARSLDVL-SRKM-DSQQDFWV 235 (532)
Q Consensus 180 ~--~k~~LlVlDdv~~~~--~~~~l~~~~~~------------------~~~gs~ilvTtr~~~v~-~~~~-~~~~~~~l 235 (532)
. .+..+|++|++.... ....+...+.. ...+..+|.||...... .... .....+.+
T Consensus 86 ~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l 165 (324)
T 1hqc_A 86 NSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL 165 (324)
T ss_dssp TTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEEC
T ss_pred HhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEec
Confidence 3 466899999998652 11111100000 01235567666644321 1111 12358999
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 048213 236 GVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVARAL 285 (532)
Q Consensus 236 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 285 (532)
.+++.++..+++...+.... ..-..+....++..++|.|..+..+...+
T Consensus 166 ~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 166 EYYTPEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999999999988764221 12235678899999999998877666544
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.66 E-value=3.6e-08 Score=88.48 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=83.0
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC------CCCEEEEec-------cCchh--
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK------LFDRVIFVE-------ESESG-- 169 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~~~~-------~~~~~-- 169 (532)
...++||+++++++.+++.....+.+.|+|++|+|||++|+.+++...... ......... .....
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHH
Confidence 456899999999999999877777889999999999999999998753210 122121110 01111
Q ss_pred -hHHHHHHHH-hccCcEEEEEcCCCCcc---------cccccccccCCCCCCeEEEEeecChHHh------hhcCCCCce
Q 048213 170 -RARSLCNRL-KKEKMILVILDNIWENL---------DFHAVGIPHGDDHKGCKVLLTARSLDVL------SRKMDSQQD 232 (532)
Q Consensus 170 -~~~~l~~~l-~~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~ilvTtr~~~v~------~~~~~~~~~ 232 (532)
....+.+.+ ..++..+||+||++... .+..+...+.. ..+..+|.||...... .........
T Consensus 101 ~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~ 179 (195)
T 1jbk_A 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQYIEKDAALERRFQK 179 (195)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHHHTTTCHHHHTTEEE
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHHHHhcCHHHHHHhce
Confidence 122233323 23567899999997642 11111111111 2244567766654421 111122236
Q ss_pred EEccCCCHHHHHHHH
Q 048213 233 FWVGVLKEDEAWSLF 247 (532)
Q Consensus 233 ~~l~~L~~~~~~~Lf 247 (532)
+.+.+++.++..+++
T Consensus 180 i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 180 VFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECCCCCHHHHHTTC
T ss_pred eecCCCCHHHHHHHh
Confidence 788888887776543
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=2.8e-09 Score=106.75 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=95.6
Q ss_pred HHhhhhcccccCCc-hhhhc-----cccccEEEeccccccC--cc-cccccccccEEeecccccccc-----------cc
Q 048213 372 VVIDLTYMNLLSLP-SSLGL-----LTNLQTLCLYYCKLQD--TS-VLGELKILEILRLRVNELTRA-----------GS 431 (532)
Q Consensus 372 ~~l~l~~~~l~~lp-~~~~~-----l~~L~~L~l~~~~l~~--~~-~i~~l~~L~~L~l~~~~l~~~-----------~l 431 (532)
+.+++.+|.+.... ..+.. ..+|+.|++++|.+.+ +. ....+++|++|+|++|.++.. ..
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 45677777765421 12222 2688999999988765 22 334567889999999988654 24
Q ss_pred CCcceEEeccccccCC----CCCcccccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccc----h
Q 048213 432 SQLKHLSVRGLRASAP----NPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLF----T 503 (532)
Q Consensus 432 ~~Lr~L~l~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~----p 503 (532)
++|++|+|++|.+ .. .....+...++|++|+|++|.|....-..+.......++|++|+|++|. ++... +
T Consensus 155 ~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~ 232 (372)
T 3un9_A 155 CQITTLRLSNNPL-TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALA 232 (372)
T ss_dssp CCCCEEECCSSCC-HHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHH
T ss_pred CccceeeCCCCCC-ChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHH
Confidence 6799999998865 11 1223446678899999999977643211111111455789999998865 55432 2
Q ss_pred hhhhhcCCCccEEEeecCC
Q 048213 504 SSIISSFVGLQCLEICECP 522 (532)
Q Consensus 504 ~~~~~~L~~L~~L~l~~c~ 522 (532)
..+ ...++|++|+|++|+
T Consensus 233 ~~L-~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 233 RAA-REHPSLELLHLYFNE 250 (372)
T ss_dssp HHH-HHCSSCCEEECTTSS
T ss_pred HHH-HhCCCCCEEeccCCC
Confidence 222 456889999998885
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=3.2e-08 Score=98.22 Aligned_cols=95 Identities=22% Similarity=0.104 Sum_probs=61.7
Q ss_pred hhhhcc-cccCCchhhhccccccEEEecc-ccccC-c-ccccccccccEEeecccccccc------ccCCcceEEecccc
Q 048213 374 IDLTYM-NLLSLPSSLGLLTNLQTLCLYY-CKLQD-T-SVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLR 443 (532)
Q Consensus 374 l~l~~~-~l~~lp~~~~~l~~L~~L~l~~-~~l~~-~-~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~ 443 (532)
++..++ .+..+|. +..+++|++|+|++ |.+.. + ..+..+++|++|+|++|++..+ .+++|++|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 355565 6777888 88888888888885 77777 2 4577888888888888877665 45566666666665
Q ss_pred ccCCCCCcccccCCCCCEEecCCccccc
Q 048213 444 ASAPNPTESEVALPKLETVCLSSINIER 471 (532)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 471 (532)
+ ....+..+..++ |++|+|.+|.+..
T Consensus 92 l-~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 L-ESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp C-SCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred c-ceeCHHHcccCC-ceEEEeeCCCccC
Confidence 5 222222333333 6666666665554
No 157
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.61 E-value=4e-07 Score=87.58 Aligned_cols=175 Identities=16% Similarity=0.172 Sum_probs=103.9
Q ss_pred ccccccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe---ccC
Q 048213 103 KDYEAFESRMSTFNDILNALKS-------------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV---EES 166 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~~-------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~---~~~ 166 (532)
.....++|.+..+++|.+.+.. ...+.+.|+|++|+|||+||+.+++..... |-..... ...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~--~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT--FIRVVGSELVKKF 91 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE--EEEEEGGGGCCCS
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EEEEehHHHHHhc
Confidence 3356789999999999887742 345779999999999999999999875432 2221100 001
Q ss_pred ---chhhHHHHHHHHhccCcEEEEEcCCCCcc----------------cccccccccC--CCCCCeEEEEeecChHHhh-
Q 048213 167 ---ESGRARSLCNRLKKEKMILVILDNIWENL----------------DFHAVGIPHG--DDHKGCKVLLTARSLDVLS- 224 (532)
Q Consensus 167 ---~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~gs~ilvTtr~~~v~~- 224 (532)
.......+.......+..+|+||+++... .+..+...+. ....+..||.||.......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~ 171 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDP 171 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCH
Confidence 11223334444444567899999997531 1111111111 1234667788887553321
Q ss_pred hcC---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC-chHHHHHH
Q 048213 225 RKM---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAG-LPVSIVTV 281 (532)
Q Consensus 225 ~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~ 281 (532)
... .-...+.+...+.++..+++...+........ .....++..+.| .|-.|..+
T Consensus 172 ~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 172 AILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp HHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHH
T ss_pred HHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHH
Confidence 011 22247899999999999999988763221111 124567777777 45444443
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=6.9e-08 Score=95.07 Aligned_cols=80 Identities=16% Similarity=0.081 Sum_probs=53.6
Q ss_pred cCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccccccccccccccccCCCcc-EEEeccCCCCCccchhhhhhc
Q 048213 431 SSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQNLK-RLILFNCWNLTCLFTSSIISS 509 (532)
Q Consensus 431 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~-~L~L~~c~~l~~l~p~~~~~~ 509 (532)
+++|+.|+|++|+. ..-....|.++++|++|+|.+| ++.+++..+ .++.+|+ .|++.+ .++.+++..| .+
T Consensus 225 ~~~L~~l~L~~n~i-~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF----~~~~~L~~~l~l~~--~l~~I~~~aF-~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNA-TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF----SNCGRLAGTLELPA--SVTAIEFGAF-MG 295 (329)
T ss_dssp CTTCCEEECTTBCC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTT----TTCTTCCEEEEECT--TCCEECTTTT-TT
T ss_pred cCCCeEEECCCCCc-ceecHhhhhCCCCCCEEECCcc-cceehHHHh----hCChhccEEEEEcc--cceEEchhhh-hC
Confidence 45677777777655 3334446777777777777775 676766652 2567777 777765 5777755555 67
Q ss_pred CCCccEEEee
Q 048213 510 FVGLQCLEIC 519 (532)
Q Consensus 510 L~~L~~L~l~ 519 (532)
+++|+.|+++
T Consensus 296 c~~L~~l~l~ 305 (329)
T 3sb4_A 296 CDNLRYVLAT 305 (329)
T ss_dssp CTTEEEEEEC
T ss_pred CccCCEEEeC
Confidence 8888888774
No 159
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.56 E-value=6.9e-08 Score=103.03 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=36.0
Q ss_pred HHhhhhcccccC-----CchhhhccccccEEEeccccccC------cccccccccccEEeecccccccc-----ccCCcc
Q 048213 372 VVIDLTYMNLLS-----LPSSLGLLTNLQTLCLYYCKLQD------TSVLGELKILEILRLRVNELTRA-----GSSQLK 435 (532)
Q Consensus 372 ~~l~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr 435 (532)
+.+++.+|.+.. ++..+..+++|++|++++|.+.. +..+.++++|++|++++|.+..+ .+++|+
T Consensus 167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~ 246 (592)
T 3ogk_B 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246 (592)
T ss_dssp SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCC
T ss_pred CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHH
Confidence 445555554432 22233455666666666665541 12344556666666666655444 445555
Q ss_pred eEEecc
Q 048213 436 HLSVRG 441 (532)
Q Consensus 436 ~L~l~~ 441 (532)
+|++++
T Consensus 247 ~L~l~~ 252 (592)
T 3ogk_B 247 EFCGGS 252 (592)
T ss_dssp EEEECB
T ss_pred hhcccc
Confidence 555554
No 160
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.54 E-value=1.6e-07 Score=87.62 Aligned_cols=173 Identities=11% Similarity=0.032 Sum_probs=99.2
Q ss_pred cccccc---hHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhccC
Q 048213 106 EAFESR---MSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKKEK 182 (532)
Q Consensus 106 ~~~~gR---~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~k 182 (532)
..|+|+ ...++.+..+......+.+.|+|++|+||||+|+.+++..... .+..................+.+ .+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~ 104 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGIHASISTALLEGL--EQ 104 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGGGGGSCGGGGTTG--GG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHHHHHHHhc--cC
Confidence 456653 3555666665555567889999999999999999999876543 23333322222111111111122 24
Q ss_pred cEEEEEcCCCCccc----ccccccccCC-CCCC-eEEEEeecChHHh-----hhc---CCCCceEEccCCCHHHHHHHHH
Q 048213 183 MILVILDNIWENLD----FHAVGIPHGD-DHKG-CKVLLTARSLDVL-----SRK---MDSQQDFWVGVLKEDEAWSLFK 248 (532)
Q Consensus 183 ~~LlVlDdv~~~~~----~~~l~~~~~~-~~~g-s~ilvTtr~~~v~-----~~~---~~~~~~~~l~~L~~~~~~~Lf~ 248 (532)
..+||+||++.... .+.+...+.. ...+ .++|+||+...-. ... ......+.+.+++.++..+++.
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~ 184 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQ 184 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHH
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHH
Confidence 57899999976522 1222111100 0112 2477777643210 000 0112678999999999999998
Q ss_pred HHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 048213 249 KMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVA 282 (532)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 282 (532)
..+.... ..-..+....+++.++|.+-.+..+.
T Consensus 185 ~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 185 RRAAMRG-LQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHTT-CCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHcC-CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 8764111 12235677889999999887665544
No 161
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.54 E-value=6.9e-07 Score=91.24 Aligned_cols=174 Identities=11% Similarity=0.096 Sum_probs=105.6
Q ss_pred ccccccchHHH---HHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchh---hHHHHHHHH
Q 048213 105 YEAFESRMSTF---NDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESG---RARSLCNRL 178 (532)
Q Consensus 105 ~~~~~gR~~~~---~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~---~~~~l~~~l 178 (532)
...++|.+..+ ..+...+..+....+.|+|++|+||||+|+.+++..... |-........... .........
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f~~l~a~~~~~~~ir~~~~~a~~~~ 102 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--VERISAVTSGVKEIREAIERARQNR 102 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--EEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--eEEEEeccCCHHHHHHHHHHHHHhh
Confidence 45788998888 677777777777889999999999999999999876432 3222111111111 112222222
Q ss_pred hccCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEE-eecChHH--hhhcCCCCceEEccCCCHHHHHHHHHHHhCC
Q 048213 179 KKEKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLL-TARSLDV--LSRKMDSQQDFWVGVLKEDEAWSLFKKMAGD 253 (532)
Q Consensus 179 ~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-Ttr~~~v--~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 253 (532)
..+++.+|++|+++.. ...+.+...+.. + ...+|. ||.+... .........++.+.+++.++...++.+.+..
T Consensus 103 ~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 103 NAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp HTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred hcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 2357899999999865 334444433322 2 233443 5544421 1112233458899999999999999887642
Q ss_pred C------CCCcchHHHHHHHHHHcCCchHHHHHHH
Q 048213 254 Y------IEGSEFKWVAKDVAKKCAGLPVSIVTVA 282 (532)
Q Consensus 254 ~------~~~~~~~~~~~~i~~~c~glPLai~~~~ 282 (532)
. ....-..+..+.+++.++|.+-.+..+-
T Consensus 181 ~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 181 KTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 1112235677888889999876554443
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.8e-07 Score=92.78 Aligned_cols=97 Identities=19% Similarity=0.102 Sum_probs=73.3
Q ss_pred EEEeccc-cccCcccccccccccEEeecc-cccccc------ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCc
Q 048213 396 TLCLYYC-KLQDTSVLGELKILEILRLRV-NELTRA------GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSI 467 (532)
Q Consensus 396 ~L~l~~~-~l~~~~~i~~l~~L~~L~l~~-~~l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 467 (532)
.++.+++ .+..++.+..+.+|++|+|++ |.+..+ .+++|++|+|++|++ ....+..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCCEEeCCCC
Confidence 4566776 777733388899999999986 888776 577888888888876 4445667788888888888888
Q ss_pred ccccccccccccccccCCCccEEEeccCCCCC
Q 048213 468 NIERIWQNQVAAMSCGIQNLKRLILFNCWNLT 499 (532)
Q Consensus 468 ~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~ 499 (532)
.|+.+|..+ +....|+.|+|.+++ +.
T Consensus 91 ~l~~~~~~~-----~~~~~L~~l~l~~N~-~~ 116 (347)
T 2ifg_A 91 ALESLSWKT-----VQGLSLQELVLSGNP-LH 116 (347)
T ss_dssp CCSCCCSTT-----TCSCCCCEEECCSSC-CC
T ss_pred ccceeCHHH-----cccCCceEEEeeCCC-cc
Confidence 888888776 443448888888743 44
No 163
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.52 E-value=4.2e-08 Score=104.75 Aligned_cols=129 Identities=17% Similarity=0.150 Sum_probs=84.5
Q ss_pred hccccccEEEeccccccC--ccccc-ccccccEEeeccc-ccccc-------ccCCcceEEeccccccCCCCCc----cc
Q 048213 389 GLLTNLQTLCLYYCKLQD--TSVLG-ELKILEILRLRVN-ELTRA-------GSSQLKHLSVRGLRASAPNPTE----SE 453 (532)
Q Consensus 389 ~~l~~L~~L~l~~~~l~~--~~~i~-~l~~L~~L~l~~~-~l~~~-------~l~~Lr~L~l~~~~~~~~~~~~----~~ 453 (532)
..+++|++|++++|.+.+ +..+. .+++|++|++++| .+... .+++|++|++++|.+ ....+. ..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV-DDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEE-ECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCcc-CCcchHHHHHHh
Confidence 456788888888887765 44444 6788888888887 44431 578888888888865 222222 22
Q ss_pred ccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 454 VALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 454 ~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
..+++|++|+|++|. ..++...++.....+++|++|+|++|..++.+ +..+ +.+++|++|++++|
T Consensus 181 ~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~-~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLL-QRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH-HHHH-HHCTTCSEEECSBC
T ss_pred hcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH-HHHH-hcCCcceEcccccc
Confidence 356688888888885 22222222111134688888888888777766 5555 67888888875433
No 164
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.52 E-value=2.4e-06 Score=81.44 Aligned_cols=187 Identities=14% Similarity=0.150 Sum_probs=99.6
Q ss_pred ccccchHHHHHHHH-------Hhc---CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe----ccCchh---
Q 048213 107 AFESRMSTFNDILN-------ALK---SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV----EESESG--- 169 (532)
Q Consensus 107 ~~~gR~~~~~~i~~-------~l~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~----~~~~~~--- 169 (532)
.++|.....++++. .+. ......+.|+|++|+|||++|+.+++..... |-..... ......
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~--~~~i~~~~~~~g~~~~~~~~ 111 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP--FIKICSPDKMIGFSETAKCQ 111 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS--EEEEECGGGCTTCCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC--EEEEeCHHHhcCCchHHHHH
Confidence 46677666655555 232 4456789999999999999999999874321 2111100 001111
Q ss_pred hHHHHHHHHhccCcEEEEEcCCCCc------------ccccccccccC---CCCCCeEEEEeecChHHhhh--cCCC-Cc
Q 048213 170 RARSLCNRLKKEKMILVILDNIWEN------------LDFHAVGIPHG---DDHKGCKVLLTARSLDVLSR--KMDS-QQ 231 (532)
Q Consensus 170 ~~~~l~~~l~~~k~~LlVlDdv~~~------------~~~~~l~~~~~---~~~~gs~ilvTtr~~~v~~~--~~~~-~~ 231 (532)
....+.+.....+..+|++|+++.. ...+.+...+. .......||.||........ .... ..
T Consensus 112 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~ 191 (272)
T 1d2n_A 112 AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFST 191 (272)
T ss_dssp HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSE
T ss_pred HHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccce
Confidence 1222333333246789999998653 01122211111 12334557778877654322 1222 34
Q ss_pred eEEccCCCH-HHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC------chHHHHHHHHHHccCChHHHHHHHHHhc
Q 048213 232 DFWVGVLKE-DEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAG------LPVSIVTVARALRNKRLFDWKDALEQLR 301 (532)
Q Consensus 232 ~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g------lPLai~~~~~~l~~~~~~~w~~~l~~~~ 301 (532)
.+.+.+++. ++-..++.... . -..+....+++.+.| ++-++..+-......+...+..+++.+.
T Consensus 192 ~i~~p~l~~r~~i~~i~~~~~-~-----~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 192 TIHVPNIATGEQLLEALELLG-N-----FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLR 262 (272)
T ss_dssp EEECCCEEEHHHHHHHHHHHT-C-----SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred EEcCCCccHHHHHHHHHHhcC-C-----CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 678888887 55555555431 1 124557788888877 3444443333322224445555554443
No 165
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.51 E-value=1.9e-06 Score=81.61 Aligned_cols=176 Identities=17% Similarity=0.174 Sum_probs=97.6
Q ss_pred ccccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEE---eccC---
Q 048213 105 YEAFESRMSTFNDILNALK---S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIF---VEES--- 166 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~---~~~~--- 166 (532)
-..++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++..... |-..-. ....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP--FLAMAGAEFVEVIGGL 82 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC--EEEEETTTTSSSSTTH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEEechHHHHhhccCh
Confidence 4567888888777765542 1 234668899999999999999999875432 211110 0000
Q ss_pred chhhHHHHHHHHhccCcEEEEEcCCCCcc-------------c----ccccccccCC--CCCCeEEEEeecChHHhh-hc
Q 048213 167 ESGRARSLCNRLKKEKMILVILDNIWENL-------------D----FHAVGIPHGD--DHKGCKVLLTARSLDVLS-RK 226 (532)
Q Consensus 167 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~----~~~l~~~~~~--~~~gs~ilvTtr~~~v~~-~~ 226 (532)
.......+.+........+|++|+++... . +..+...+.. ...+..||.||....... ..
T Consensus 83 ~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l 162 (262)
T 2qz4_A 83 GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGAL 162 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGG
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHH
Confidence 11122333333333467999999998641 1 1112111111 123566777776654321 11
Q ss_pred C---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchH-HHHHHH
Q 048213 227 M---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV-SIVTVA 282 (532)
Q Consensus 227 ~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 282 (532)
. .....+.+...+.++-.+++...+...............+++.+.|.+- .|..+.
T Consensus 163 ~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 163 MRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp GSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred hcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 1 2235778899999999999988764222222222334778888887753 444433
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=3.1e-07 Score=91.18 Aligned_cols=176 Identities=12% Similarity=0.029 Sum_probs=106.6
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhcc--CCCCEEEEeccC--chhhH-HHHHHHHh
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENE--KLFDRVIFVEES--ESGRA-RSLCNRLK 179 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~~~~~~--~~~~~-~~l~~~l~ 179 (532)
...++|+++.++.+..++..+....+.|+|++|+||||+|+.+++..... ..+........+ ..... +.+.....
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhh
Confidence 45689999999999999987755559999999999999999998874311 112222111111 11111 11111111
Q ss_pred ---------------ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecChHHh-hhcCCCCceEEccCCCHH
Q 048213 180 ---------------KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSLDVL-SRKMDSQQDFWVGVLKED 241 (532)
Q Consensus 180 ---------------~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~~~~~~~~~l~~L~~~ 241 (532)
.++.-+|++|++.... ..+.+...+.......++|++|....-. .........+.+.+++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~ 195 (353)
T 1sxj_D 116 LTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDAS 195 (353)
T ss_dssp SCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHH
T ss_pred hcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHH
Confidence 1245699999987542 2333332222223456777777544311 111112247889999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 242 EAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 242 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
+....+...+.... ..-.++....|++.++|.|..+..+
T Consensus 196 ~~~~~l~~~~~~~~-~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 196 NAIDRLRFISEQEN-VKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHHHHHHHHTTT-CCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999888664211 1122567889999999999865444
No 167
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.47 E-value=5.1e-08 Score=104.04 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=19.0
Q ss_pred CCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 484 IQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 484 L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
+++|++|+|++|. +.......+++.+++|++|++++|
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 4566666666655 433212222245566666666554
No 168
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=1.1e-07 Score=83.46 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=25.1
Q ss_pred CccEEEeccCCCCCccchhhhhhcCCCccEEEeecCCcccc
Q 048213 486 NLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICECPVLKE 526 (532)
Q Consensus 486 ~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c~~L~~ 526 (532)
+|++|+|++|++++.-.-..+ .++++|++|+|++|+.++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence 577777777776665422233 5667777777777776654
No 169
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.45 E-value=1.5e-06 Score=85.78 Aligned_cols=173 Identities=13% Similarity=0.093 Sum_probs=105.8
Q ss_pred ccccccchHHHHHHHHHhc-----CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHh
Q 048213 105 YEAFESRMSTFNDILNALK-----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLK 179 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~-----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~ 179 (532)
...|+|++..++++..++. ......|.|+|++|+|||++|+.+++..... |-..-..... ....+...+.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~--~~~~~~~~~~---~~~~~~~~~~ 102 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN--IKTTAAPMIE---KSGDLAAILT 102 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC--EEEEEGGGCC---SHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEecchhcc---chhHHHHHHH
Confidence 5679999999999888886 2445678999999999999999998875322 3221111111 2223333333
Q ss_pred -ccCcEEEEEcCCCCcc--cccccccccC------------------CCCCCeEEEEeecChHHh-hh-cCCCCceEEcc
Q 048213 180 -KEKMILVILDNIWENL--DFHAVGIPHG------------------DDHKGCKVLLTARSLDVL-SR-KMDSQQDFWVG 236 (532)
Q Consensus 180 -~~k~~LlVlDdv~~~~--~~~~l~~~~~------------------~~~~gs~ilvTtr~~~v~-~~-~~~~~~~~~l~ 236 (532)
..+..+|+||++.... ....+...+. ...++..+|.+|...... .. .......+.+.
T Consensus 103 ~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~ 182 (338)
T 3pfi_A 103 NLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLE 182 (338)
T ss_dssp TCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECC
T ss_pred hccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCC
Confidence 1466899999998652 1111111110 011235666666653322 11 11223689999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHH
Q 048213 237 VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVAR 283 (532)
Q Consensus 237 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 283 (532)
+++.++...++...+.... ..-..+....+++.+.|.|-.+..+..
T Consensus 183 ~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 183 FYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp CCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999988764211 122356778888999999965554433
No 170
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.44 E-value=6.3e-06 Score=80.64 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=107.0
Q ss_pred cccccccccchHHHHHHHHHhc------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEE---ec--
Q 048213 102 NKDYEAFESRMSTFNDILNALK------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIF---VE-- 164 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~---~~-- 164 (532)
...-..++|.+..++.|.+.+. ....+-+.++|++|+|||+||+++++..... |-..-. ..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~--~~~v~~~~l~~~~ 91 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST--FFSVSSSDLVSKW 91 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE--EEEEEHHHHHTTT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC--EEEEchHHHhhcc
Confidence 3445678999999999988772 1234679999999999999999999875432 221110 00
Q ss_pred -cCchhhHHHHHHHHhccCcEEEEEcCCCCccc-------------ccccccc---cCCCCCCeEEEEeecChHHhhh--
Q 048213 165 -ESESGRARSLCNRLKKEKMILVILDNIWENLD-------------FHAVGIP---HGDDHKGCKVLLTARSLDVLSR-- 225 (532)
Q Consensus 165 -~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~gs~ilvTtr~~~v~~~-- 225 (532)
.........+.......+..+|+||+++.... ...+... +.....+..||.||........
T Consensus 92 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al 171 (322)
T 3eie_A 92 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 171 (322)
T ss_dssp GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHH
Confidence 01112233444444445678999999985421 1112111 1123345667777776433210
Q ss_pred cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc-hHHHHHHH
Q 048213 226 KMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL-PVSIVTVA 282 (532)
Q Consensus 226 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 282 (532)
.......+.+...+.++-.++|...+...... ........|++.+.|. +-.|..+.
T Consensus 172 ~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 172 RRRFERRIYIPLPDLAARTTMFEINVGDTPCV-LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC-CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HcccCeEEEeCCCCHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 01223467888899999999999887643221 1244567888888874 54555444
No 171
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=3.6e-08 Score=98.67 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=91.5
Q ss_pred cccccEEEeccccccC--cccccc-----cccccEEeecccccccc-------ccCCcceEEeccccccCCCCCccc---
Q 048213 391 LTNLQTLCLYYCKLQD--TSVLGE-----LKILEILRLRVNELTRA-------GSSQLKHLSVRGLRASAPNPTESE--- 453 (532)
Q Consensus 391 l~~L~~L~l~~~~l~~--~~~i~~-----l~~L~~L~l~~~~l~~~-------~l~~Lr~L~l~~~~~~~~~~~~~~--- 453 (532)
+++|+.|++++|.+.. ...+.. .++|++|+|++|.++.. .+++|++|+|++|.+ .......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC-CHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC-CHHHHHHHHHH
Confidence 4679999999999876 233332 37999999999988764 567899999999976 22222222
Q ss_pred --ccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccc----hhhhhhcCCCccEEEeecCC
Q 048213 454 --VALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLF----TSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 454 --~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~----p~~~~~~L~~L~~L~l~~c~ 522 (532)
...++|++|+|++|.|+......+......+++|++|+|++|. ++... +..+ ...++|++|+|++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L-~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQL-DRNRQLQELNVAYNG 222 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHG-GGCSCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHH-hcCCCcCeEECCCCC
Confidence 2457899999999988753322222212456899999999865 55431 3333 577899999999985
No 172
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.43 E-value=6e-06 Score=80.73 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=105.8
Q ss_pred ccccccccchHHHHHHHHHhc------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe------c
Q 048213 103 KDYEAFESRMSTFNDILNALK------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV------E 164 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~------~ 164 (532)
..-..++|.++.++.|.+.+. ....+.|.++|++|+|||+||+++++..... .|-..-.. .
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-~~~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS-TFFSISSSDLVSKWL 87 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC-EEEEEECCSSCCSSC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC-cEEEEEhHHHHhhhh
Confidence 335678888888888877653 1234789999999999999999999876211 12111100 0
Q ss_pred cCchhhHHHHHHHHhccCcEEEEEcCCCCccc-------------cccccccc---CCCCCCeEEEEeecChHHhh-h-c
Q 048213 165 ESESGRARSLCNRLKKEKMILVILDNIWENLD-------------FHAVGIPH---GDDHKGCKVLLTARSLDVLS-R-K 226 (532)
Q Consensus 165 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~---~~~~~gs~ilvTtr~~~v~~-~-~ 226 (532)
.........+.+.....+..+|++|+++.... ...+...+ .....+..||.||....... . .
T Consensus 88 g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~ 167 (322)
T 1xwi_A 88 GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIR 167 (322)
T ss_dssp CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHH
Confidence 11223444555555445789999999986410 01111111 11234556666776543211 0 0
Q ss_pred CCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc-hHHHHHHHH
Q 048213 227 MDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL-PVSIVTVAR 283 (532)
Q Consensus 227 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~ 283 (532)
......+.+...+.++-.+++.......... -.......|++.+.|. +-.|..+..
T Consensus 168 rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 168 RRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred hhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1233578888899999999998877532211 1245578888999887 444555543
No 173
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.40 E-value=5.5e-06 Score=82.30 Aligned_cols=174 Identities=10% Similarity=0.065 Sum_probs=103.2
Q ss_pred ccccccchHHHHHHHHHhc------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccC------
Q 048213 105 YEAFESRMSTFNDILNALK------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEES------ 166 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~------ 166 (532)
...++|.+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++..... | .......
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~--~--~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT--F--FSISASSLTSKWV 158 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE--E--EEEEGGGGCCSST
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe--E--EEEehHHhhcccc
Confidence 4568999999999888763 2345789999999999999999999875321 2 1111110
Q ss_pred --chhhHHHHHHHHhccCcEEEEEcCCCCcc-------------cccccccccC----CCCCCeEEEEeecChHHh-hh-
Q 048213 167 --ESGRARSLCNRLKKEKMILVILDNIWENL-------------DFHAVGIPHG----DDHKGCKVLLTARSLDVL-SR- 225 (532)
Q Consensus 167 --~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~~----~~~~gs~ilvTtr~~~v~-~~- 225 (532)
.......+.......+..+|+||+++... ....+...+. ....+..||.||...... ..
T Consensus 159 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l 238 (357)
T 3d8b_A 159 GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAA 238 (357)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHH
Confidence 11223333343333467999999995431 1112211111 112345666677654322 11
Q ss_pred cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC-chHHHHHHHH
Q 048213 226 KMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAG-LPVSIVTVAR 283 (532)
Q Consensus 226 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~ 283 (532)
.......+.+...+.++..+++...+.... ..-..+....|++.+.| .+-.|..+..
T Consensus 239 ~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 239 RRRLVKRLYIPLPEASARKQIVINLMSKEQ-CCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHHHHHTSC-BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HhhCceEEEeCCcCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 112334778888999998888877664211 11124567888898888 4556665554
No 174
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.38 E-value=1.5e-07 Score=100.46 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=55.4
Q ss_pred ccccccEEEeccccccC--cccccc-cc-cccEEeecccc-ccc--c-----ccCCcceEEeccccccCCC----CCccc
Q 048213 390 LLTNLQTLCLYYCKLQD--TSVLGE-LK-ILEILRLRVNE-LTR--A-----GSSQLKHLSVRGLRASAPN----PTESE 453 (532)
Q Consensus 390 ~l~~L~~L~l~~~~l~~--~~~i~~-l~-~L~~L~l~~~~-l~~--~-----~l~~Lr~L~l~~~~~~~~~----~~~~~ 453 (532)
.+++|++|++++|.+.+ +..+.+ ++ +|++|++++|. +.. + .+++|++|+|++|.+ ... .+...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcchhHHHHHH
Confidence 45555555555554443 233333 22 25555555543 111 0 345555555555543 111 11122
Q ss_pred ccCCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEee
Q 048213 454 VALPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEIC 519 (532)
Q Consensus 454 ~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~ 519 (532)
.++++|++|+|++|.++.+....++....++++|++|+|++|. +..+ |..+ +.+++|++|+++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l-~~~~-~~~~~L~~L~l~ 251 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILEL-VGFF-KAAANLEEFCGG 251 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGG-HHHH-HHCTTCCEEEEC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHH-HHHH-hhhhHHHhhccc
Confidence 3455555555555544422221111111334555555555543 3334 3333 455555555554
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=5.6e-06 Score=86.51 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=108.7
Q ss_pred cccccccchHHHHHHHHHhcC-----------------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccC
Q 048213 104 DYEAFESRMSTFNDILNALKS-----------------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEES 166 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~~-----------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~ 166 (532)
....++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++... +........+
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in~s~ 112 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQNASD 112 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEECTTS
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEeCCC
Confidence 356799999999999999874 1347899999999999999999998763 2222221111
Q ss_pred ch--hhHH-HHH------------HHH-----hccCcEEEEEcCCCCccc-----ccccccccCCCCCCeEEEEeecChH
Q 048213 167 ES--GRAR-SLC------------NRL-----KKEKMILVILDNIWENLD-----FHAVGIPHGDDHKGCKVLLTARSLD 221 (532)
Q Consensus 167 ~~--~~~~-~l~------------~~l-----~~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~ilvTtr~~~ 221 (532)
.. .... .+. ... ..+++.+|++|+++.... +..+...+. ..+..||+++....
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERN 190 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTT
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEcCCC
Confidence 10 0000 000 000 124678999999976522 122211111 12334555554432
Q ss_pred H--hhhcCCCCceEEccCCCHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHHcCC-chHHHHHHHHHHcc-C--ChHHH
Q 048213 222 V--LSRKMDSQQDFWVGVLKEDEAWSLFKKMAG--DYIEGSEFKWVAKDVAKKCAG-LPVSIVTVARALRN-K--RLFDW 293 (532)
Q Consensus 222 v--~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~l~~-~--~~~~w 293 (532)
. ..........+.+.+++.++..+.+...+. +.... ++....|++.++| ++-++..+.....+ . +.+.-
T Consensus 191 ~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v 267 (516)
T 1sxj_A 191 LPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENI 267 (516)
T ss_dssp SSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHH
T ss_pred CccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHH
Confidence 1 111223345789999999999998887664 11111 2347788899998 55556555433322 1 55555
Q ss_pred HHHHHH
Q 048213 294 KDALEQ 299 (532)
Q Consensus 294 ~~~l~~ 299 (532)
..++..
T Consensus 268 ~~~~~~ 273 (516)
T 1sxj_A 268 NEISKA 273 (516)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 176
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.35 E-value=1.2e-05 Score=79.67 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=103.3
Q ss_pred ccccccchHHHHHHHHHhc------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEE----e--ccC
Q 048213 105 YEAFESRMSTFNDILNALK------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIF----V--EES 166 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~----~--~~~ 166 (532)
-..++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++..... |-..-. . ...
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~v~~~~l~~~~~g~ 127 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST--FFSVSSSDLVSKWMGE 127 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE--EEEEEHHHHHSCC---
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--EEEeeHHHHhhhhcch
Confidence 4568899999988888763 1223568899999999999999999876432 211110 0 011
Q ss_pred chhhHHHHHHHHhccCcEEEEEcCCCCccc-------------cccccccc---CCCCCCeEEEEeecChHHhh--hcCC
Q 048213 167 ESGRARSLCNRLKKEKMILVILDNIWENLD-------------FHAVGIPH---GDDHKGCKVLLTARSLDVLS--RKMD 228 (532)
Q Consensus 167 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~---~~~~~gs~ilvTtr~~~v~~--~~~~ 228 (532)
.......+.......+..+|+||+++.... ...+...+ .....+..||.||....... ....
T Consensus 128 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR 207 (355)
T 2qp9_X 128 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR 207 (355)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcc
Confidence 122334444444445779999999985421 11121111 11234566676776543210 0112
Q ss_pred CCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc-hHHHHHHH
Q 048213 229 SQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL-PVSIVTVA 282 (532)
Q Consensus 229 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 282 (532)
....+.+...+.++-.+++...+...... -.......|++.+.|. +-.|..+.
T Consensus 208 f~~~i~i~~P~~~~r~~il~~~l~~~~~~-~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 208 FERRIYIPLPDLAARTTMFEINVGDTPSV-LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCEEEEeCCcCHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34577889999999999998877633211 1244567888899884 54455444
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=2.2e-06 Score=85.16 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=104.0
Q ss_pred ccccccchHHHHHHHHHh-cCCCceEEEEEccCCCchHHHHHHHHHHhhccCC----CC---------------------
Q 048213 105 YEAFESRMSTFNDILNAL-KSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKL----FD--------------------- 158 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~--------------------- 158 (532)
-..++|.+..++.+.+++ ..+....+.|+|+.|+||||+|+.+++....... ++
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 456889999999999988 6555555999999999999999999884211000 00
Q ss_pred EEEEeccC--chh--hHHHHHHHHhc--------------cCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeec
Q 048213 159 RVIFVEES--ESG--RARSLCNRLKK--------------EKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTAR 218 (532)
Q Consensus 159 ~~~~~~~~--~~~--~~~~l~~~l~~--------------~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr 218 (532)
........ ... ....+.+.+.. ++.-++++|++...+ ..+.+...+.....++.+|++|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~ 172 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCD 172 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEES
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 00011100 000 12222222211 245699999998742 12233222222234677887777
Q ss_pred ChH-HhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcch-HHHHHHHHHHcCCchHHHHHHHH
Q 048213 219 SLD-VLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEF-KWVAKDVAKKCAGLPVSIVTVAR 283 (532)
Q Consensus 219 ~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~-~~~~~~i~~~c~glPLai~~~~~ 283 (532)
... +..........+.+.+++.++..+.+...+..... .-. ++....|++.++|.+-.+..+..
T Consensus 173 ~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 173 SMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp CSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 643 21111222367899999999999999877641110 111 34577888999998865554443
No 178
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.32 E-value=1.8e-05 Score=79.66 Aligned_cols=176 Identities=14% Similarity=0.110 Sum_probs=103.5
Q ss_pred ccccccccchHHHHHHHHHhc------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc-----
Q 048213 103 KDYEAFESRMSTFNDILNALK------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE----- 165 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~----- 165 (532)
.....++|.+..++.|.+++. ....+.|.|+|++|+|||+||+.+++..... | ......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~--~--~~v~~~~l~~~ 187 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT--F--FNISAASLTSK 187 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE--E--EEECSCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc--E--EEeeHHHhhcc
Confidence 345678999999999998873 1234789999999999999999998874322 2 111110
Q ss_pred ---CchhhHHHHHHHHhccCcEEEEEcCCCCcc-------------ccccccccc---CC-CCCCeEEEEeecChHHh-h
Q 048213 166 ---SESGRARSLCNRLKKEKMILVILDNIWENL-------------DFHAVGIPH---GD-DHKGCKVLLTARSLDVL-S 224 (532)
Q Consensus 166 ---~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~---~~-~~~gs~ilvTtr~~~v~-~ 224 (532)
........+..........+|+||+++... ....+...+ .. ......||.||...... .
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~ 267 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDE 267 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCH
Confidence 112233444444443466899999997541 001111111 11 12345566677653322 1
Q ss_pred h-cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchH-HHHHHHH
Q 048213 225 R-KMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV-SIVTVAR 283 (532)
Q Consensus 225 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 283 (532)
. .......+.+...+.++-.+++...+..... .-..+....|++.+.|..- +|..+..
T Consensus 268 ~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 268 AVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp HHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1 1122346889999999999999887753211 1224567788888888543 5555443
No 179
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.30 E-value=1.7e-05 Score=81.05 Aligned_cols=177 Identities=15% Similarity=0.163 Sum_probs=105.0
Q ss_pred ccccccccchHHHHHHHHHhc------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-------Ee
Q 048213 103 KDYEAFESRMSTFNDILNALK------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-------FV 163 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-------~~ 163 (532)
..-..++|.+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++..... .|-..- +.
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~-~~~~v~~~~l~~~~~ 209 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS-TFFSISSSDLVSKWL 209 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS-EEEEECCC-------
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC-CEEEEeHHHHHhhhc
Confidence 345678899999988888763 1235789999999999999999999875211 121100 00
Q ss_pred ccCchhhHHHHHHHHhccCcEEEEEcCCCCccc-------------ccccccccCC---CCCCeEEEEeecChHHhh-h-
Q 048213 164 EESESGRARSLCNRLKKEKMILVILDNIWENLD-------------FHAVGIPHGD---DHKGCKVLLTARSLDVLS-R- 225 (532)
Q Consensus 164 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~---~~~gs~ilvTtr~~~v~~-~- 225 (532)
. ........+.......+..+|+||+++.... ...+...+.. ...+..||.||....... .
T Consensus 210 g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al 288 (444)
T 2zan_A 210 G-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 288 (444)
T ss_dssp ---CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHH
T ss_pred c-hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHH
Confidence 0 1112344455544445779999999985410 1112122211 234566777776543221 1
Q ss_pred cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc-hHHHHHHH
Q 048213 226 KMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL-PVSIVTVA 282 (532)
Q Consensus 226 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 282 (532)
.......+.+...+.++-..+|..++..... .-.......|++.+.|. +-.|..+.
T Consensus 289 ~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 289 RRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1123357788888888888999887753221 11245567888888884 44555444
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.29 E-value=1.1e-05 Score=79.41 Aligned_cols=164 Identities=11% Similarity=0.052 Sum_probs=104.1
Q ss_pred hHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhcc--------------------CCCCEEEEecc-----
Q 048213 112 MSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENE--------------------KLFDRVIFVEE----- 165 (532)
Q Consensus 112 ~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~~~~----- 165 (532)
++..+.+.+.+..+.. ..+.++|+.|+|||++|+.+++...-. .++|.......
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 87 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNT 87 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCC
Confidence 4556677777766654 569999999999999999998864322 12444433322
Q ss_pred CchhhHHHHHHHHh----ccCcEEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEEccCC
Q 048213 166 SESGRARSLCNRLK----KEKMILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFWVGVL 238 (532)
Q Consensus 166 ~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~l~~L 238 (532)
...+.+..+.+.+. .+++-++|+|+++... ..+.+...+..-..++.+|++|.+.. +..........+.+.++
T Consensus 88 ~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~ 167 (334)
T 1a5t_A 88 LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPP 167 (334)
T ss_dssp BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred CCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCC
Confidence 11223344444443 2467899999998652 33444333333344677777776653 32222233458999999
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 048213 239 KEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTV 281 (532)
Q Consensus 239 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 281 (532)
+.++..+.+.... .-.++.+..+++.++|.|..+..+
T Consensus 168 ~~~~~~~~L~~~~------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 168 PEQYAVTWLSREV------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CHHHHHHHHHHHC------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred CHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999988775 112455678999999999766443
No 181
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.29 E-value=1.6e-05 Score=76.70 Aligned_cols=176 Identities=13% Similarity=0.080 Sum_probs=101.7
Q ss_pred cccccccchHHHHHHHHHhcC------------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe------cc
Q 048213 104 DYEAFESRMSTFNDILNALKS------------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV------EE 165 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~~------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~------~~ 165 (532)
.-..++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+.+++..... |-..-.. ..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~--~~~i~~~~l~~~~~~ 96 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT--FLNISAASLTSKYVG 96 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE--EEEEESTTTSSSSCS
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEeeHHHHhhcccc
Confidence 356789999999998887631 235789999999999999999999875422 2111100 01
Q ss_pred CchhhHHHHHHHHhccCcEEEEEcCCCCccc-------------ccccc---cccCCC--CCCeEEEEeecChHHhh-h-
Q 048213 166 SESGRARSLCNRLKKEKMILVILDNIWENLD-------------FHAVG---IPHGDD--HKGCKVLLTARSLDVLS-R- 225 (532)
Q Consensus 166 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~---~~~~~~--~~gs~ilvTtr~~~v~~-~- 225 (532)
........+.......+..+|++|+++.... ...+. ..++.. +.+..||.||....... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 1122333344444435678999999975411 00111 111111 23456777777643210 0
Q ss_pred cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchH-HHHHHH
Q 048213 226 KMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPV-SIVTVA 282 (532)
Q Consensus 226 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 282 (532)
.......+.+...+.++-..++...+..... .-..+....+++.+.|.+- ++..+.
T Consensus 177 ~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 177 LRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 0112346777888888888888776542111 1124567788889988875 554444
No 182
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.28 E-value=1.8e-06 Score=83.97 Aligned_cols=146 Identities=12% Similarity=0.012 Sum_probs=85.9
Q ss_pred ccccchHHHHHHHHHhc---------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCC---CCEEEEecc---
Q 048213 107 AFESRMSTFNDILNALK---------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKL---FDRVIFVEE--- 165 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~~~~~--- 165 (532)
.++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++....... .........
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 47888888888776543 234457999999999999999988876543221 122211111
Q ss_pred --CchhhHHHHHHHHhccCcEEEEEcCCCCc-----------ccccccccccCCCCCCeEEEEeecChHHh-------hh
Q 048213 166 --SESGRARSLCNRLKKEKMILVILDNIWEN-----------LDFHAVGIPHGDDHKGCKVLLTARSLDVL-------SR 225 (532)
Q Consensus 166 --~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~ilvTtr~~~v~-------~~ 225 (532)
-.......+...+...+..+|++|+++.. .....+...+.....+..+|.||...... ..
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 01112223333333234569999999843 22233333333334466777777643211 00
Q ss_pred cCCCCceEEccCCCHHHHHHHHHHHhC
Q 048213 226 KMDSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 226 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
.......+.+.+++.++-.+++...+.
T Consensus 192 ~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 192 RSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 001226789999999999999887764
No 183
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.26 E-value=3.6e-06 Score=82.43 Aligned_cols=170 Identities=11% Similarity=0.039 Sum_probs=98.5
Q ss_pred ccccccchHHHHHHHHHhcCCCc-eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccC--chhhHHHHHHHHhc-
Q 048213 105 YEAFESRMSTFNDILNALKSPDV-NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEES--ESGRARSLCNRLKK- 180 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~- 180 (532)
-..++|.+..++.+.+++..+.. .++.+.|++|+|||++|+.+++..... .......+ .......+.+....
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~----~~~i~~~~~~~~~i~~~~~~~~~~~ 100 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNAD----MMFVNGSDCKIDFVRGPLTNFASAA 100 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEE----EEEEETTTCCHHHHHTHHHHHHHBC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCC----EEEEcccccCHHHHHHHHHHHHhhc
Confidence 46789999999999999986554 567778889999999999999875321 11122111 11112222222221
Q ss_pred ---cCcEEEEEcCCCCcc---cccccccccCCCCCCeEEEEeecChHHh-hhcCCCCceEEccCCCHHHHHHHH------
Q 048213 181 ---EKMILVILDNIWENL---DFHAVGIPHGDDHKGCKVLLTARSLDVL-SRKMDSQQDFWVGVLKEDEAWSLF------ 247 (532)
Q Consensus 181 ---~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTtr~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf------ 247 (532)
+++.++++||++... ..+.+...+.....+.++|+||....-. .........+.+.+++.++-.+++
T Consensus 101 ~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 180 (324)
T 3u61_B 101 SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRR 180 (324)
T ss_dssp CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 267899999998654 2333322221112456788888765421 101111247899999988743332
Q ss_pred -HHHhC-CCCCCcchHHHHHHHHHHcCCchHHHH
Q 048213 248 -KKMAG-DYIEGSEFKWVAKDVAKKCAGLPVSIV 279 (532)
Q Consensus 248 -~~~~~-~~~~~~~~~~~~~~i~~~c~glPLai~ 279 (532)
...+. .....+ ..+....|++.++|.+-.+.
T Consensus 181 l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 181 LTEICKHEGIAIA-DMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHHHH
Confidence 22222 111111 12667788888888765433
No 184
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=2.1e-06 Score=84.39 Aligned_cols=97 Identities=14% Similarity=0.046 Sum_probs=80.1
Q ss_pred cccccEEeecccccccc------ccCCcceEEeccccccCCCCCcccccCCCCC-EEecCCcccccccccccccccccCC
Q 048213 413 LKILEILRLRVNELTRA------GSSQLKHLSVRGLRASAPNPTESEVALPKLE-TVCLSSINIERIWQNQVAAMSCGIQ 485 (532)
Q Consensus 413 l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~-~L~L~~~~l~~lp~~~~~~~~~~L~ 485 (532)
+++|+.|++++|+++.+ ++++|+.|.|.++ . ..-....|.++++|+ .|+|.+ +++.+++..+ .+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF----~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF----MGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTT----TTCT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhh----hCCc
Confidence 78999999999988887 7889999999987 3 334556789999999 999999 7888887762 3689
Q ss_pred CccEEEeccCCCCCccchhhhhhcCCCccEEEe
Q 048213 486 NLKRLILFNCWNLTCLFTSSIISSFVGLQCLEI 518 (532)
Q Consensus 486 ~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l 518 (532)
+|+.|++.+ +.+..+++..| .++++|+.|+.
T Consensus 298 ~L~~l~l~~-n~i~~I~~~aF-~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATG-DKITTLGDELF-GNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECS-SCCCEECTTTT-CTTCCCCEEEC
T ss_pred cCCEEEeCC-CccCccchhhh-cCCcchhhhcc
Confidence 999999986 66899955566 78999998874
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.25 E-value=2.6e-06 Score=75.75 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=42.4
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999877677889999999999999999988753
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=2.2e-06 Score=85.09 Aligned_cols=133 Identities=11% Similarity=-0.014 Sum_probs=88.4
Q ss_pred CchhhhccccccEEEeccccccCcccccccccccEEeecccccccc--------ccCCcceEEeccc--cccCCC-----
Q 048213 384 LPSSLGLLTNLQTLCLYYCKLQDTSVLGELKILEILRLRVNELTRA--------GSSQLKHLSVRGL--RASAPN----- 448 (532)
Q Consensus 384 lp~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~l~~~--------~l~~Lr~L~l~~~--~~~~~~----- 448 (532)
++..+..+++|+.|.+++|.-..++.+ .+++|++|++..|.+..- .+++|++|+|+.+ .. ...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~-~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY-GFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGG-TCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccc-ccchhHHH
Confidence 455567789999999988732222234 388999999998876543 6899999998632 21 111
Q ss_pred CCccc--ccCCCCCEEecCCcccccc-cccccccccccCCCccEEEeccCCCCCccc----hhhhhhcCCCccEEEeecC
Q 048213 449 PTESE--VALPKLETVCLSSINIERI-WQNQVAAMSCGIQNLKRLILFNCWNLTCLF----TSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 449 ~~~~~--~~l~~L~~L~L~~~~l~~l-p~~~~~~~~~~L~~L~~L~L~~c~~l~~l~----p~~~~~~L~~L~~L~l~~c 521 (532)
....+ ..+|+|++|+|++|.+..- +..+... ..+++|++|+|+. +.++... +..+ ..+++|+.|+|++|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a--~~~~~L~~LdLs~-n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES--DILPQLETMDISA-GVLTDEGARLLLDHV-DKIKHLKFINMKYN 317 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC--SSGGGCSEEECCS-SCCBHHHHHHHHTTH-HHHTTCSEEECCSB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC--ccCCCCCEEECCC-CCCChHHHHHHHhhc-ccCCcceEEECCCC
Confidence 11112 3589999999999976532 2222111 1358999999985 5576531 2333 46799999999988
Q ss_pred C
Q 048213 522 P 522 (532)
Q Consensus 522 ~ 522 (532)
.
T Consensus 318 ~ 318 (362)
T 2ra8_A 318 Y 318 (362)
T ss_dssp B
T ss_pred c
Confidence 5
No 187
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.20 E-value=9.9e-06 Score=78.30 Aligned_cols=147 Identities=10% Similarity=0.075 Sum_probs=86.1
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHhhccC------CCCEEEEecc---C------
Q 048213 106 EAFESRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK------LFDRVIFVEE---S------ 166 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~~~~~---~------ 166 (532)
..+.||+++.++|...|. .+....+.|+|++|+|||++|+.|++...... .|........ +
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 348899999999987776 56778999999999999999999999875321 2333221110 0
Q ss_pred ---------------chhhHHHHHHHH--hccCcEEEEEcCCCCccccccccccc--CC-CCCCeEEEEeecChHH----
Q 048213 167 ---------------ESGRARSLCNRL--KKEKMILVILDNIWENLDFHAVGIPH--GD-DHKGCKVLLTARSLDV---- 222 (532)
Q Consensus 167 ---------------~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~l~~~~--~~-~~~gs~ilvTtr~~~v---- 222 (532)
.......+.+.+ ..++.++++||+++...+-+.+...+ +. ......||.++.....
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 011122222322 12467999999998764222221111 11 1112233434433211
Q ss_pred h-hhcC-CC-CceEEccCCCHHHHHHHHHHHhC
Q 048213 223 L-SRKM-DS-QQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 223 ~-~~~~-~~-~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
. .... .. ...+.+.+.+.++-.+++...+.
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 0000 11 24689999999999999988764
No 188
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.4e-05 Score=79.31 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=101.7
Q ss_pred cccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEE---ecc--
Q 048213 104 DYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIF---VEE-- 165 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~---~~~-- 165 (532)
....+.|-++.+++|.+.+. -...+-|.++|++|.|||.||+++++..... |-..-. ...
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--FIRVSGAELVQKYI 223 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--EEEEEGGGGSCSST
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--ceEEEhHHhhcccc
Confidence 34567888888888776654 1345779999999999999999999986643 322210 001
Q ss_pred -CchhhHHHHHHHHhccCcEEEEEcCCCCccc----------------ccccccccC--CCCCCeEEEEeecChHHhh-h
Q 048213 166 -SESGRARSLCNRLKKEKMILVILDNIWENLD----------------FHAVGIPHG--DDHKGCKVLLTARSLDVLS-R 225 (532)
Q Consensus 166 -~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtr~~~v~~-~ 225 (532)
.....+..++........++|++|+++.... ...+...+. ....+..||.||....... .
T Consensus 224 Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpA 303 (405)
T 4b4t_J 224 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPA 303 (405)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHH
T ss_pred chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHh
Confidence 1122344555555556789999999985310 111111111 1234556777777654331 1
Q ss_pred c---CCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 226 K---MDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 226 ~---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
. ..-...+.++..+.++-.++|..+........+.. ...+++.+.|.-
T Consensus 304 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 304 LLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred HcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 1 13346888999999999999988775322222111 456777787753
No 189
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.18 E-value=2e-05 Score=76.27 Aligned_cols=168 Identities=12% Similarity=0.154 Sum_probs=97.1
Q ss_pred cccccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEec------
Q 048213 104 DYEAFESRMSTFNDILNALKS-------------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVE------ 164 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~~-------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~------ 164 (532)
....++|.+..+++|.+++.. ...+.+.|+|++|+|||+||+.+++..... | .....
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~--~--i~v~~~~l~~~ 88 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--F--ISIKGPELLTM 88 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE--E--EEECHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC--E--EEEEhHHHHhh
Confidence 345688998888888776541 345789999999999999999999875421 2 11110
Q ss_pred --cCchhhHHHHHHHHhccCcEEEEEcCCCCcc------------c----ccccccccC--CCCCCeEEEEeecChHHh-
Q 048213 165 --ESESGRARSLCNRLKKEKMILVILDNIWENL------------D----FHAVGIPHG--DDHKGCKVLLTARSLDVL- 223 (532)
Q Consensus 165 --~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~gs~ilvTtr~~~v~- 223 (532)
.........+.+........+|++|+++... . ...+...+. ....+..||.||......
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld 168 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 168 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence 0111123334444333467999999997421 0 111211111 123456777788765432
Q ss_pred hhcC---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHH
Q 048213 224 SRKM---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVS 277 (532)
Q Consensus 224 ~~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 277 (532)
.... .-...+.+...+.++-.+++...........+. ....++..+.|.|-+
T Consensus 169 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred hHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 1111 223478899999999899988776532111111 123555667776543
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.17 E-value=2.4e-05 Score=77.99 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=38.1
Q ss_pred ccccccchHHHHH---HHHHhcCCCc--eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 105 YEAFESRMSTFND---ILNALKSPDV--NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 105 ~~~~~gR~~~~~~---i~~~l~~~~~--~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...|+|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4579999988766 4444444433 58999999999999999999987653
No 191
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.12 E-value=1.5e-05 Score=82.16 Aligned_cols=144 Identities=12% Similarity=0.084 Sum_probs=83.8
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC------CCCEEEEe-----ccCchhhHHH
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK------LFDRVIFV-----EESESGRARS 173 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~~~-----~~~~~~~~~~ 173 (532)
...++||+.+++++++.+......-+.|+|++|+|||++|+.+++...... .......+ ..........
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~ 258 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHH
Confidence 346899999999999999765556778999999999999999998752210 01111000 0011123344
Q ss_pred HHHHHhccCcEEEEEcCCCCcccccccccccCCCCCCeEEEEeecChHH----h--hhcCCCCceEEccCCCHHHHHHHH
Q 048213 174 LCNRLKKEKMILVILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDV----L--SRKMDSQQDFWVGVLKEDEAWSLF 247 (532)
Q Consensus 174 l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v----~--~~~~~~~~~~~l~~L~~~~~~~Lf 247 (532)
+...+...++.+|++| ...+..+.+...+. ....++|.+|..... . .........+.+++.+.++..+++
T Consensus 259 ~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL 334 (468)
T 3pxg_A 259 VMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQIL 334 (468)
T ss_dssp HHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHH
Confidence 5555554567899999 22222233333332 223456655554331 0 111112246899999999999999
Q ss_pred HHHhC
Q 048213 248 KKMAG 252 (532)
Q Consensus 248 ~~~~~ 252 (532)
.....
T Consensus 335 ~~~~~ 339 (468)
T 3pxg_A 335 QGLRD 339 (468)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 87653
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=2.2e-05 Score=77.45 Aligned_cols=172 Identities=10% Similarity=0.032 Sum_probs=100.3
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE--EeccC---chhhHHHHHHHHh
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI--FVEES---ESGRARSLCNRLK 179 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--~~~~~---~~~~~~~l~~~l~ 179 (532)
-..++|.+..++.+..++..++.+.+.++|+.|+||||+|+.+++..... .+...+ ....+ .......+.....
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 45678988889988888887766559999999999999999998864321 111111 11111 1111112222221
Q ss_pred c-----cCcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 180 K-----EKMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 180 ~-----~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
. +.+-++|+|+++.. ...+.+...+......+.+|++|.... +..........+.+.+++.++..+.+...+
T Consensus 103 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 103 TRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp BCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHH
Confidence 1 23678999998754 223333222221234566777765543 111111223478899999999888887765
Q ss_pred CCCCCCcchHHHHHHHHHHcCCchHHH
Q 048213 252 GDYIEGSEFKWVAKDVAKKCAGLPVSI 278 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~c~glPLai 278 (532)
.... ..-.++..+.++..++|.+--+
T Consensus 183 ~~~~-~~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 183 VHEK-LKLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HTTT-CCBCHHHHHHHHHHHTTCHHHH
T ss_pred HHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 2111 1112456778888888877543
No 193
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.10 E-value=1.6e-05 Score=81.26 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=103.3
Q ss_pred cccc-cchH--HHHHHHHHhcCCC-ceEEEEEccCCCchHHHHHHHHHHhhccC-CCCEEEEeccCc-hhhH--------
Q 048213 106 EAFE-SRMS--TFNDILNALKSPD-VNMLGIYGMGGIRKTTPAKEVAIKAENEK-LFDRVIFVEESE-SGRA-------- 171 (532)
Q Consensus 106 ~~~~-gR~~--~~~~i~~~l~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~~~~~~-~~~~-------- 171 (532)
..|+ |... ....+........ ...+.|+|++|+||||||+.+++...... ............ ....
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 184 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL 184 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccH
Confidence 4565 5332 2333333333332 67899999999999999999998754321 122222111111 0111
Q ss_pred HHHHHHHhccCcEEEEEcCCCCccc----ccccccccCC-CCCCeEEEEeecChHHh--------hhcCCCCceEEccCC
Q 048213 172 RSLCNRLKKEKMILVILDNIWENLD----FHAVGIPHGD-DHKGCKVLLTARSLDVL--------SRKMDSQQDFWVGVL 238 (532)
Q Consensus 172 ~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~ilvTtr~~~v~--------~~~~~~~~~~~l~~L 238 (532)
..+.+.+. .+..+|++||++.... .+.+...+.. ...|..||+||....-. ...+....++.+.++
T Consensus 185 ~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 185 NEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp HHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred HHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 12222222 1567999999975432 1222222111 13467788888763210 001122357889999
Q ss_pred CHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH------ccC--ChHHHHHHHHHh
Q 048213 239 KEDEAWSLFKKMAG--DYIEGSEFKWVAKDVAKKCAGLPVSIVTVARAL------RNK--RLFDWKDALEQL 300 (532)
Q Consensus 239 ~~~~~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l------~~~--~~~~w~~~l~~~ 300 (532)
+.++-.+++.+.+. +.... .+....|+..+.|.+-.+..+-..+ .++ +.+.+..++...
T Consensus 264 ~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 264 DEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp CHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999988764 11111 3446788889999886554332211 222 566666655443
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=1.2e-06 Score=76.71 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=45.5
Q ss_pred ccCCcceEEeccccccCCCCCcccccC----CCCCEEecCCc-ccccccccccccccccCCCccEEEeccCCCCCccc--
Q 048213 430 GSSQLKHLSVRGLRASAPNPTESEVAL----PKLETVCLSSI-NIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLF-- 502 (532)
Q Consensus 430 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l----~~L~~L~L~~~-~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~-- 502 (532)
++++|++|+|++|..........+..+ ++|++|+|++| +|+.-.-..+ ..+++|++|+|++|+.++...
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L----~~~~~L~~L~L~~c~~Itd~gl~ 158 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL----HHFRNLKYLFLSDLPGVKEKEKI 158 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG----GGCTTCCEEEEESCTTCCCHHHH
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH----hcCCCCCEEECCCCCCCCchHHH
Confidence 445556666666643111222233332 36888888888 4653211111 356999999999999888641
Q ss_pred hhhhhhcCCCccE
Q 048213 503 TSSIISSFVGLQC 515 (532)
Q Consensus 503 p~~~~~~L~~L~~ 515 (532)
...+-..+|+++.
T Consensus 159 ~~~L~~~lP~l~V 171 (176)
T 3e4g_A 159 VQAFKTSLPSLEL 171 (176)
T ss_dssp HHHHHHHCTTCEE
T ss_pred HHHHHHHCCCcEE
Confidence 1222246677653
No 195
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=4.6e-05 Score=76.81 Aligned_cols=167 Identities=14% Similarity=0.184 Sum_probs=98.7
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe---cc---
Q 048213 105 YEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV---EE--- 165 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~---~~--- 165 (532)
...+.|-++.+++|.+.+. -...+-|.++|++|.|||.||+++++..... |-..-.. ..
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~--~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN--FIFSPASGIVDKYIG 257 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--EEEEEGGGTCCSSSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EEEEehhhhccccch
Confidence 4567788888888776653 1345789999999999999999999986643 3222100 00
Q ss_pred CchhhHHHHHHHHhccCcEEEEEcCCCCcc--------c--------ccccccccC--CCCCCeEEEEeecChHHhh-hc
Q 048213 166 SESGRARSLCNRLKKEKMILVILDNIWENL--------D--------FHAVGIPHG--DDHKGCKVLLTARSLDVLS-RK 226 (532)
Q Consensus 166 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~--------~~~l~~~~~--~~~~gs~ilvTtr~~~v~~-~~ 226 (532)
........++........++|++|+++... . +..+...+. ....+..||.||....... ..
T Consensus 258 ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAl 337 (437)
T 4b4t_L 258 ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPAL 337 (437)
T ss_dssp HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTT
T ss_pred HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHH
Confidence 112234445554444678999999997431 0 111111111 1233556777887665432 12
Q ss_pred CCC---CceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 227 MDS---QQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 227 ~~~---~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
... ...+.++..+.++-.++|..+........+.. ...+++.+.|+-
T Consensus 338 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 338 LRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp TSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred hCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 222 24677888888888888887764322211111 356777777753
No 196
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.0001 Score=73.39 Aligned_cols=168 Identities=14% Similarity=0.174 Sum_probs=99.2
Q ss_pred ccccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eecc-
Q 048213 103 KDYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEE- 165 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~- 165 (532)
.....+.|-++.+++|.+.+. -...+-|.++|++|.|||.||+++++..... |-..- +...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--fi~v~~s~l~sk~ 256 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--FLRIVGSELIQKY 256 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--EEEEESGGGCCSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--EEEEEHHHhhhcc
Confidence 345567788888888776553 1345789999999999999999999987643 32221 0011
Q ss_pred --CchhhHHHHHHHHhccCcEEEEEcCCCCccc----------------ccccccccC--CCCCCeEEEEeecChHHhh-
Q 048213 166 --SESGRARSLCNRLKKEKMILVILDNIWENLD----------------FHAVGIPHG--DDHKGCKVLLTARSLDVLS- 224 (532)
Q Consensus 166 --~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtr~~~v~~- 224 (532)
........++........++|++|+++.... ...+...+. ....+..||.||.......
T Consensus 257 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDp 336 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDP 336 (437)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCT
T ss_pred CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCH
Confidence 1122344555555555789999999974310 001111111 1234556777777665442
Q ss_pred hcCCC---CceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 225 RKMDS---QQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 225 ~~~~~---~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
..... ...+.+...+.++-.++|..+........+. -...|++.+.|+
T Consensus 337 ALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~Gf 387 (437)
T 4b4t_I 337 ALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDL 387 (437)
T ss_dssp TSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSC
T ss_pred HHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 12221 2357788888888889998877532222211 135667777765
No 197
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=5.8e-05 Score=75.94 Aligned_cols=166 Identities=15% Similarity=0.199 Sum_probs=99.3
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eecc---
Q 048213 105 YEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEE--- 165 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~--- 165 (532)
...+.|-++.+++|.+.+. -...+-|.++|++|.|||.||+++++..... |-..- +...
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~--fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT--FIRVIGSELVQKYVG 285 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE--EEEEEGGGGCCCSSS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC--eEEEEhHHhhcccCC
Confidence 3468888888888876543 2356889999999999999999999986643 32221 0011
Q ss_pred CchhhHHHHHHHHhccCcEEEEEcCCCCccc----------------ccccccccC--CCCCCeEEEEeecChHHhh-hc
Q 048213 166 SESGRARSLCNRLKKEKMILVILDNIWENLD----------------FHAVGIPHG--DDHKGCKVLLTARSLDVLS-RK 226 (532)
Q Consensus 166 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtr~~~v~~-~~ 226 (532)
........++........++|++|+++.... ...+...+. ....+..||.||....... ..
T Consensus 286 esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpAL 365 (467)
T 4b4t_H 286 EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPAL 365 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHH
T ss_pred HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhh
Confidence 1122344455554446789999999974310 001111111 1233455667776554331 11
Q ss_pred C---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 227 M---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 227 ~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
. .-...+.+...+.++-.++|..+........+.. ...|++.|.|.
T Consensus 366 lRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~Gf 414 (467)
T 4b4t_H 366 LRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNS 414 (467)
T ss_dssp HSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSC
T ss_pred hccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCC
Confidence 1 2345788888888888999988776332222111 35677788775
No 198
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.99 E-value=4.6e-06 Score=71.24 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=62.5
Q ss_pred ccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhhc-cCCCCEEEEeccCchhhHHHHHHHHhccCc
Q 048213 107 AFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN-EKLFDRVIFVEESESGRARSLCNRLKKEKM 183 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~~~~~~~~~~~~~l~~~l~~~k~ 183 (532)
.++|+...+.++.+.+. .....-|.|+|..|+|||++|+.+++.... ...|-..+ ........... .+.....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~-~~~~~~~~~~~---~~~~a~~ 77 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE-LTPDNAPQLND---FIALAQG 77 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEE-CCTTTSSCHHH---HHHHHTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEEC-CCCCcchhhhc---HHHHcCC
Confidence 57899999999888775 233345789999999999999999886422 22343111 11111111111 1211234
Q ss_pred EEEEEcCCCCcc--cccccccccCCCCCCeEEEEeecCh
Q 048213 184 ILVILDNIWENL--DFHAVGIPHGDDHKGCKVLLTARSL 220 (532)
Q Consensus 184 ~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~ 220 (532)
..|++|+++... ....+...+.......++|.||...
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 579999998653 2223322222233456788777653
No 199
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.4e-05 Score=78.72 Aligned_cols=169 Identities=14% Similarity=0.172 Sum_probs=98.5
Q ss_pred cccccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---Eecc
Q 048213 102 NKDYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEE 165 (532)
Q Consensus 102 ~~~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~ 165 (532)
......+.|-++.+++|.+.+. -...+-|.++|++|.|||.||+++++..... |-..- +...
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~--f~~v~~s~l~~~ 254 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT--FLKLAAPQLVQM 254 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--EEEEEGGGGCSS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC--EEEEehhhhhhc
Confidence 3345678899988888877643 1346789999999999999999999986543 32221 0001
Q ss_pred ---CchhhHHHHHHHHhccCcEEEEEcCCCCcc------------c----ccccccccCC--CCCCeEEEEeecChHHhh
Q 048213 166 ---SESGRARSLCNRLKKEKMILVILDNIWENL------------D----FHAVGIPHGD--DHKGCKVLLTARSLDVLS 224 (532)
Q Consensus 166 ---~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~--~~~gs~ilvTtr~~~v~~ 224 (532)
........++........++|++|+++... . ...+...+.. ...+..||.||.......
T Consensus 255 ~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 112234445544444578999999987320 0 1112112211 123445666777655432
Q ss_pred h-cCC---CCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 225 R-KMD---SQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 225 ~-~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
. ... -...+.++..+.++-.++|..+........+.. ...|++.+.|+
T Consensus 335 ~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~ 386 (434)
T 4b4t_M 335 PALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEF 386 (434)
T ss_dssp TTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSC
T ss_pred HhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCC
Confidence 1 122 224678888888888888877654211111111 35677777775
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.98 E-value=3e-05 Score=86.13 Aligned_cols=144 Identities=10% Similarity=0.092 Sum_probs=83.5
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC------CCCEEEEecc----------Cch
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK------LFDRVIFVEE----------SES 168 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~~~~~----------~~~ 168 (532)
...++||++++.++++.+.......+.++|++|+|||++|+.+++...... .......+.. ...
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~ 248 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 248 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHH
Confidence 346899999999999998876666789999999999999999998753210 1111111111 111
Q ss_pred hhHHHHHHHHhc-cCcEEEEEcCCCCcc-------ccc---ccccccCCCCCCeEEEEeecChHH-----hhhcCCCCce
Q 048213 169 GRARSLCNRLKK-EKMILVILDNIWENL-------DFH---AVGIPHGDDHKGCKVLLTARSLDV-----LSRKMDSQQD 232 (532)
Q Consensus 169 ~~~~~l~~~l~~-~k~~LlVlDdv~~~~-------~~~---~l~~~~~~~~~gs~ilvTtr~~~v-----~~~~~~~~~~ 232 (532)
.....+.+.+.. +++.+|++|++.... .++ .+...+ . ..+..+|.+|..... ..........
T Consensus 249 ~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~~~~~~~d~aL~rRf~~ 326 (854)
T 1qvr_A 249 ERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDEYREIEKDPALERRFQP 326 (854)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHHHHHHTTCTTTCSCCCC
T ss_pred HHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchHHhhhccCHHHHhCCce
Confidence 123334444433 367899999997642 121 122222 1 123345555543322 1112222346
Q ss_pred EEccCCCHHHHHHHHHHH
Q 048213 233 FWVGVLKEDEAWSLFKKM 250 (532)
Q Consensus 233 ~~l~~L~~~~~~~Lf~~~ 250 (532)
+.+++++.++..+++...
T Consensus 327 i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 327 VYVDEPTVEETISILRGL 344 (854)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHhh
Confidence 899999999999998754
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=3.8e-05 Score=74.18 Aligned_cols=139 Identities=16% Similarity=0.059 Sum_probs=88.4
Q ss_pred chHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhh-c-cCCCCEEEEeccC---chhhHHHHHHHHh----cc
Q 048213 111 RMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE-N-EKLFDRVIFVEES---ESGRARSLCNRLK----KE 181 (532)
Q Consensus 111 R~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~-~~~F~~~~~~~~~---~~~~~~~l~~~l~----~~ 181 (532)
-++.++.+.+.+..++.+...++|+.|+||||+|..+++... . ..+.+.......+ ..+.+..+.+... .+
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~ 81 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELY 81 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSS
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccC
Confidence 345567777777766678999999999999999999987521 1 1234544444322 1122344444443 24
Q ss_pred CcEEEEEcCCCCc--ccccccccccCCCCCCeEEEEeecChH-HhhhcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 182 KMILVILDNIWEN--LDFHAVGIPHGDDHKGCKVLLTARSLD-VLSRKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 182 k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
++-++|+|+++.. ...+.+...+..-...+.+|++|.+.. +... .... .+.+.++++++..+.+.+..
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~t-I~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPT-IKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHH-HHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHH-HHce-eEeCCCCCHHHHHHHHHHHh
Confidence 5679999999865 344555444433345677777665543 3222 2223 99999999999999998876
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=2e-06 Score=81.19 Aligned_cols=82 Identities=20% Similarity=0.127 Sum_probs=49.2
Q ss_pred ccCCcceEEecccccc-CCCCCcccccCCCCCEEecCCcccccccccccccccccCC--CccEEEeccCCCCCccch---
Q 048213 430 GSSQLKHLSVRGLRAS-APNPTESEVALPKLETVCLSSINIERIWQNQVAAMSCGIQ--NLKRLILFNCWNLTCLFT--- 503 (532)
Q Consensus 430 ~l~~Lr~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~--~L~~L~L~~c~~l~~l~p--- 503 (532)
.+++|+.|+|++|++. +...+..+..+++|++|+|++|.|+.+.+ + ..|. +|+.|+|++++-...+ |
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l-----~~l~~l~L~~L~L~~Npl~~~~-~~~~ 240 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-L-----DKIKGLKLEELWLDGNSLCDTF-RDQS 240 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-G-----GGGTTSCCSEEECTTSTTGGGC-SSHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-h-----hhcccCCcceEEccCCcCcccc-Ccch
Confidence 3455555555555440 11233455678888888888888776622 2 2233 8888888886643333 2
Q ss_pred ---hhhhhcCCCccEEEe
Q 048213 504 ---SSIISSFVGLQCLEI 518 (532)
Q Consensus 504 ---~~~~~~L~~L~~L~l 518 (532)
..++..+|+|+.|+=
T Consensus 241 ~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHCTTCCEESS
T ss_pred hHHHHHHHHCcccCeECC
Confidence 123367888888764
No 203
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.89 E-value=0.00014 Score=68.32 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=93.0
Q ss_pred cccccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc------
Q 048213 104 DYEAFESRMSTFNDILNALK---S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE------ 165 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~------ 165 (532)
.-..++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++..... | ......
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~--~~i~~~~~~~~~ 85 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F--FTISGSDFVEMF 85 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--E--EEECSCSSTTSC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--E--EEEeHHHHHHHh
Confidence 35568888887776655432 1 123568899999999999999999875422 2 111111
Q ss_pred --CchhhHHHHHHHHhccCcEEEEEcCCCCccc----------------ccccccccC--CCCCCeEEEEeecChHHh-h
Q 048213 166 --SESGRARSLCNRLKKEKMILVILDNIWENLD----------------FHAVGIPHG--DDHKGCKVLLTARSLDVL-S 224 (532)
Q Consensus 166 --~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtr~~~v~-~ 224 (532)
........+.+........++++|+++.... ...+...+. ....+..||.||...... .
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~ 165 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 165 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCG
T ss_pred hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCH
Confidence 1112233444444434568999999853210 011111111 113345677777665422 1
Q ss_pred hcC---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC-chHHHHH
Q 048213 225 RKM---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAG-LPVSIVT 280 (532)
Q Consensus 225 ~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~ 280 (532)
... .-...+.+...+.++-.+++..........++. ....++..+.| .+--|..
T Consensus 166 ~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHH
T ss_pred HHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHHH
Confidence 111 123467788888888888887766422111111 13456667777 5544443
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.89 E-value=0.00064 Score=66.62 Aligned_cols=193 Identities=16% Similarity=0.059 Sum_probs=104.1
Q ss_pred cccccccchHHHHHHHHHhcC-----CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHH
Q 048213 104 DYEAFESRMSTFNDILNALKS-----PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRL 178 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~~-----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l 178 (532)
.-..++|.+..++.+-..+.. .....+.++|++|+||||||+.+++..... |...-............+...+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~~~sg~~~~~~~~l~~~~~~~ 100 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IHVTSGPVLVKQGDMAAILTSL 100 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EEEEETTTCCSHHHHHHHHHHC
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EEEEechHhcCHHHHHHHHHHc
Confidence 345678888777776655542 344679999999999999999999876432 2111000001111122222222
Q ss_pred hccCcEEEEEcCCCCcc--cccccccccCCC--------C----------CCeEEEE-eecChHHhh-hcCCCCceEEcc
Q 048213 179 KKEKMILVILDNIWENL--DFHAVGIPHGDD--------H----------KGCKVLL-TARSLDVLS-RKMDSQQDFWVG 236 (532)
Q Consensus 179 ~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~--------~----------~gs~ilv-Ttr~~~v~~-~~~~~~~~~~l~ 236 (532)
.++.++++|++.... ..+.+...+... + ....++- |++...+.. ..........++
T Consensus 101 --~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld 178 (334)
T 1in4_A 101 --ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELD 178 (334)
T ss_dssp --CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECC
T ss_pred --cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCC
Confidence 244578889886542 111111100000 0 0122332 333322211 111223368899
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH------cc--C-ChHHHHHHHHHhc
Q 048213 237 VLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLPVSIVTVARAL------RN--K-RLFDWKDALEQLR 301 (532)
Q Consensus 237 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l------~~--~-~~~~w~~~l~~~~ 301 (532)
+.+.++-.+++.+.+.... ..-..+.+..|++.+.|.|-.+..+-..+ .+ . +.+....+++.+.
T Consensus 179 ~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 179 FYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp CCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 9999999999988764111 12335678999999999996543332221 11 2 5666666666654
No 205
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.85 E-value=5e-05 Score=83.28 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=84.7
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC----CCCEEEEe-------ccCchhhHHH
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK----LFDRVIFV-------EESESGRARS 173 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~~~-------~~~~~~~~~~ 173 (532)
...++||+.++++++..+......-+.++|++|+|||++|+.+++...... ..+..++. ..........
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~ 258 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHH
Confidence 346999999999999999866666788999999999999999998752110 00111110 0111223444
Q ss_pred HHHHHhccCcEEEEEcCCCCcccccccccccCCCCCCeEEEEeecChHH----h--hhcCCCCceEEccCCCHHHHHHHH
Q 048213 174 LCNRLKKEKMILVILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDV----L--SRKMDSQQDFWVGVLKEDEAWSLF 247 (532)
Q Consensus 174 l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v----~--~~~~~~~~~~~l~~L~~~~~~~Lf 247 (532)
+.+.....++.+|++| ...+..+.+...+. ....++|.||..... . .........+.++..+.++..+++
T Consensus 259 ~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il 334 (758)
T 3pxi_A 259 VMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQIL 334 (758)
T ss_dssp HHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHH
Confidence 5555554577899999 22222233333332 223556665554431 0 001112247899999999999999
Q ss_pred HHHhC
Q 048213 248 KKMAG 252 (532)
Q Consensus 248 ~~~~~ 252 (532)
.....
T Consensus 335 ~~~~~ 339 (758)
T 3pxi_A 335 QGLRD 339 (758)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 86543
No 206
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.85 E-value=0.00011 Score=80.48 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=89.0
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccC----CCCEEEEe---------c---cCch
Q 048213 105 YEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEK----LFDRVIFV---------E---ESES 168 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~~~---------~---~~~~ 168 (532)
...++||+.+++++++.+......-+.|+|++|+|||++|+.+++...... ..+..++. . ....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e 264 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHH
Confidence 346899999999999999876667789999999999999999998653211 01222211 0 1112
Q ss_pred hhHHHHHHHHhccCcEEEEEcCCCCcc--------c---ccccccccCCCCCCeEEEEeecChHHhhh------cCCCCc
Q 048213 169 GRARSLCNRLKKEKMILVILDNIWENL--------D---FHAVGIPHGDDHKGCKVLLTARSLDVLSR------KMDSQQ 231 (532)
Q Consensus 169 ~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~---~~~l~~~~~~~~~gs~ilvTtr~~~v~~~------~~~~~~ 231 (532)
.....+.+.+...+..+|++|++.... . .+.+...+ . ..+..+|.+|........ ......
T Consensus 265 ~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~ 342 (758)
T 1r6b_X 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_dssp HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-S-SCCCEEEEEECHHHHHCCCCCTTSSGGGEE
T ss_pred HHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-h-CCCeEEEEEeCchHHhhhhhcCHHHHhCce
Confidence 234445555544457999999997541 1 11222222 2 234556666654432110 111123
Q ss_pred eEEccCCCHHHHHHHHHHHh
Q 048213 232 DFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 232 ~~~l~~L~~~~~~~Lf~~~~ 251 (532)
.+.++..+.++..+++....
T Consensus 343 ~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 343 KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECCCCCHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 68899999999888887644
No 207
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.85 E-value=0.0001 Score=72.07 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=86.0
Q ss_pred HHHHHHHhcCC--CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCc-hhh--------HHHHHHHHhccCc
Q 048213 115 FNDILNALKSP--DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESE-SGR--------ARSLCNRLKKEKM 183 (532)
Q Consensus 115 ~~~i~~~l~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~-~~~--------~~~l~~~l~~~k~ 183 (532)
...+....... ....+.|+|++|+||||||+.+++..... .+.......... ... ...+.+.+. +.
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 99 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK--SV 99 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH--TC
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc--CC
Confidence 33444444332 35689999999999999999999876432 133222221111 011 111222222 35
Q ss_pred EEEEEcCCCCccc---c-cccccccCC-CCCCeEEEEeecChHHh--------hhcCCCCceEEccCCCHHHHHHHHHHH
Q 048213 184 ILVILDNIWENLD---F-HAVGIPHGD-DHKGCKVLLTARSLDVL--------SRKMDSQQDFWVGVLKEDEAWSLFKKM 250 (532)
Q Consensus 184 ~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~ilvTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 250 (532)
.+|++||+..... + +.+...+.. ...|..||+||....-. ........++.+.+ +.++..+++...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 7999999976531 1 222112110 12356788887643210 00112225689999 999999999887
Q ss_pred hCCCCCCcchHHHHHHHHHHcCCchH
Q 048213 251 AGDYIEGSEFKWVAKDVAKKCAGLPV 276 (532)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~c~glPL 276 (532)
+.... ..-.++....|++.+ |..-
T Consensus 179 ~~~~~-~~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 179 LKEFN-LELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHTT-CCCCHHHHHHHHHHC-SSHH
T ss_pred HHhcC-CCCCHHHHHHHHHhC-CCHH
Confidence 64111 112256677888888 7654
No 208
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=7.3e-06 Score=73.20 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=33.5
Q ss_pred hhccccccEEEeccc-cccC------cccccccccccEEeecccccccc----------ccCCcceEEeccccc
Q 048213 388 LGLLTNLQTLCLYYC-KLQD------TSVLGELKILEILRLRVNELTRA----------GSSQLKHLSVRGLRA 444 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~-~l~~------~~~i~~l~~L~~L~l~~~~l~~~----------~l~~Lr~L~l~~~~~ 444 (532)
+...++|++|++++| .+.+ ...+...++|++|+|++|.+... ..+.|++|+|++|.+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 455667777888777 6654 12344556677777777766543 224455555555543
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=9.9e-06 Score=72.32 Aligned_cols=111 Identities=14% Similarity=0.003 Sum_probs=77.3
Q ss_pred cccccccccEEeeccc-ccccc----------ccCCcceEEeccccccCCC----CCcccccCCCCCEEecCCccccccc
Q 048213 409 VLGELKILEILRLRVN-ELTRA----------GSSQLKHLSVRGLRASAPN----PTESEVALPKLETVCLSSINIERIW 473 (532)
Q Consensus 409 ~i~~l~~L~~L~l~~~-~l~~~----------~l~~Lr~L~l~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~~lp 473 (532)
.+...+.|++|+|++| .+... ..++|++|+|++|.+ ... +...+...++|++|+|++|.|..-.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i-~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-NDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC-CHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC-ChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 4667889999999999 88764 457899999999976 221 1234455689999999999887522
Q ss_pred ccccccccccCCCccEEEe--ccCCCCCccc----hhhhhhcCCCccEEEeecCC
Q 048213 474 QNQVAAMSCGIQNLKRLIL--FNCWNLTCLF----TSSIISSFVGLQCLEICECP 522 (532)
Q Consensus 474 ~~~~~~~~~~L~~L~~L~L--~~c~~l~~l~----p~~~~~~L~~L~~L~l~~c~ 522 (532)
-..+.......++|++|+| ++ +.++.-. ...+ ...++|++|+|++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L-~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANML-EKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHH-HHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHH-HhCCCcCEEeccCCC
Confidence 1111111145678999999 54 4565421 2333 466899999999885
No 210
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.80 E-value=1.4e-05 Score=79.28 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=85.1
Q ss_pred chhhhccccccEEEecccccc----------Cc-ccccccccccEEeecccc-c--cccccCCcceEEeccccccCCCCC
Q 048213 385 PSSLGLLTNLQTLCLYYCKLQ----------DT-SVLGELKILEILRLRVNE-L--TRAGSSQLKHLSVRGLRASAPNPT 450 (532)
Q Consensus 385 p~~~~~l~~L~~L~l~~~~l~----------~~-~~i~~l~~L~~L~l~~~~-l--~~~~l~~Lr~L~l~~~~~~~~~~~ 450 (532)
+.++..+++|+.|.+...... ++ ..+..+++|+.|.|++|. + ..+.+++|++|.|..|.. .....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l-~~~~l 210 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL-PDSVV 210 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBC-CHHHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCC-ChHHH
Confidence 345667889999988654221 12 345678999999998873 2 222578999999998865 22222
Q ss_pred ccc--ccCCCCCEEecCCc--c------cccccccccccccccCCCccEEEeccCCCCCccchhhhh--hcCCCccEEEe
Q 048213 451 ESE--VALPKLETVCLSSI--N------IERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSII--SSFVGLQCLEI 518 (532)
Q Consensus 451 ~~~--~~l~~L~~L~L~~~--~------l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~--~~L~~L~~L~l 518 (532)
..+ ..+|+|++|+|+.+ + +..+...+ . ...+++|++|+|++|...... +..++ +.+++|++|+|
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l-~--~~~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF-S--KDRFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS-C--TTTCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEEC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHH-h--cCCCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEEC
Confidence 223 37899999998632 1 22221111 0 023699999999987643222 22332 25789999999
Q ss_pred ecCCcccc
Q 048213 519 CECPVLKE 526 (532)
Q Consensus 519 ~~c~~L~~ 526 (532)
+.| .|..
T Consensus 287 s~n-~L~d 293 (362)
T 2ra8_A 287 SAG-VLTD 293 (362)
T ss_dssp CSS-CCBH
T ss_pred CCC-CCCh
Confidence 865 3543
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00015 Score=72.87 Aligned_cols=167 Identities=16% Similarity=0.156 Sum_probs=92.3
Q ss_pred cccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEe---cc--
Q 048213 104 DYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFV---EE-- 165 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~---~~-- 165 (532)
....+.|-++.+++|.+.+. -...+-|.++|++|+|||+||+++++..... |-..-.. ..
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~--~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA--FIRVNGSEFVHKYL 247 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE--EEEEEGGGTCCSSC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--eEEEecchhhcccc
Confidence 34567888888888877654 1345779999999999999999999986543 3222100 01
Q ss_pred -CchhhHHHHHHHHhccCcEEEEEcCCCCcc--------c--------ccccccccC--CCCCCeEEEEeecChHHh-hh
Q 048213 166 -SESGRARSLCNRLKKEKMILVILDNIWENL--------D--------FHAVGIPHG--DDHKGCKVLLTARSLDVL-SR 225 (532)
Q Consensus 166 -~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~--------~~~l~~~~~--~~~~gs~ilvTtr~~~v~-~~ 225 (532)
.....+..++........+++++|+++... . ...+...+. ....+..||.||...... ..
T Consensus 248 Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~A 327 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPA 327 (428)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHH
T ss_pred chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChh
Confidence 112234445555544578999999996321 0 111111111 123455677788765432 11
Q ss_pred cCC---CCceEEccCCC-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 226 KMD---SQQDFWVGVLK-EDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 226 ~~~---~~~~~~l~~L~-~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
... -...+.+..++ .++-..+|..+.......++. -...+++.+.|.
T Consensus 328 llRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~ 378 (428)
T 4b4t_K 328 LLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSL 378 (428)
T ss_dssp HHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTC
T ss_pred hhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCC
Confidence 111 12356675554 455556666655322111111 135667777765
No 212
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.76 E-value=2.4e-05 Score=74.18 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=80.7
Q ss_pred ccccccchHHHHHHHHHhc------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEE-E------Eecc
Q 048213 105 YEAFESRMSTFNDILNALK------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRV-I------FVEE 165 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~-~------~~~~ 165 (532)
...++|.+..++.+.+.+. ....+-+.|+|++|+|||++|+.+++..... |-.. . +...
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~~v~~~~~~~~~~~~ 87 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP--FFSMGGSSFIEMFVGL 87 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC--CCCCCSCTTTTSCSSS
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--EEEechHHHHHhhcch
Confidence 4568888877777766543 1223457899999999999999999875432 2110 0 0000
Q ss_pred CchhhHHHHHHHHhccCcEEEEEcCCCCcc-----------------cccccccccCC---CCCCeEEEEeecChHHhh-
Q 048213 166 SESGRARSLCNRLKKEKMILVILDNIWENL-----------------DFHAVGIPHGD---DHKGCKVLLTARSLDVLS- 224 (532)
Q Consensus 166 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~---~~~gs~ilvTtr~~~v~~- 224 (532)
.. .....+.+.....+..+|++|+++... ....+...+.. ......||.||.......
T Consensus 88 ~~-~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~ 166 (268)
T 2r62_A 88 GA-SRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDP 166 (268)
T ss_dssp CS-SSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCG
T ss_pred HH-HHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCH
Confidence 11 111122233332356899999996431 12223222211 112345677776554221
Q ss_pred hcC---CCCceEEccCCCHHHHHHHHHHHhC
Q 048213 225 RKM---DSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 225 ~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
... .-...+.+...+.++-.+++...+.
T Consensus 167 ~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 167 ALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp GGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred hHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 111 1234677888888888888877654
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.76 E-value=0.00028 Score=72.70 Aligned_cols=173 Identities=11% Similarity=0.125 Sum_probs=98.7
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---EeccCc-
Q 048213 105 YEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEESE- 167 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~~~- 167 (532)
...++|.+..+++|.+++. ....+-|.|+|++|+|||++|+.+++.... .|-..- +...-.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~--~fv~vn~~~l~~~~~g 280 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAG 280 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS--EEEEEEHHHHHTSCTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC--CEEEEEchHhhhhhcc
Confidence 3468899999998888764 234567999999999999999999886532 121111 000001
Q ss_pred --hhhHHHHHHHHhccCcEEEEEcCCCCcc-------------cccccccccC--CCCCCeEEEEeecChHHh-hhcC--
Q 048213 168 --SGRARSLCNRLKKEKMILVILDNIWENL-------------DFHAVGIPHG--DDHKGCKVLLTARSLDVL-SRKM-- 227 (532)
Q Consensus 168 --~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~gs~ilvTtr~~~v~-~~~~-- 227 (532)
......+.+....++..+|+||+++... ....+...+. ....+..||.||...... ....
T Consensus 281 ~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~ 360 (489)
T 3hu3_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360 (489)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGST
T ss_pred hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCC
Confidence 1122233333334577899999995321 0111211111 123355667777765332 1111
Q ss_pred -CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc-hHHHHHH
Q 048213 228 -DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL-PVSIVTV 281 (532)
Q Consensus 228 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 281 (532)
.-...+.+...+.++-.++|...+.......+ ....+++..+.|. +-.+..+
T Consensus 361 gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred CcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 22346889999999999999988753221111 1135566677764 5444444
No 214
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.74 E-value=1.8e-05 Score=70.17 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=56.4
Q ss_pred chHHHHHHHHHhcC---CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHH------------HHH
Q 048213 111 RMSTFNDILNALKS---PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRAR------------SLC 175 (532)
Q Consensus 111 R~~~~~~i~~~l~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~------------~l~ 175 (532)
....++.+.+++.+ .....+.|+|+.|+||||||+.+++.......+...... ..+... .+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 95 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD---TKDLIFRLKHLMDEGKDTKFL 95 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE---HHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE---HHHHHHHHHHHhcCchHHHHH
Confidence 34444555444432 335789999999999999999999876522222222211 111111 222
Q ss_pred HHHhccCcEEEEEcCCCC--cccccc--cccccCC-CCCCeEEEEeecC
Q 048213 176 NRLKKEKMILVILDNIWE--NLDFHA--VGIPHGD-DHKGCKVLLTARS 219 (532)
Q Consensus 176 ~~l~~~k~~LlVlDdv~~--~~~~~~--l~~~~~~-~~~gs~ilvTtr~ 219 (532)
+.+. +.-+|||||++. .+.|.. +...+.. ...|..+|+||..
T Consensus 96 ~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 96 KTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2333 456899999983 233321 1111111 1246678888864
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.74 E-value=0.00049 Score=70.35 Aligned_cols=167 Identities=17% Similarity=0.173 Sum_probs=94.1
Q ss_pred ccccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---EeccC---
Q 048213 105 YEAFESRMSTFNDILNALK---S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEES--- 166 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~~--- 166 (532)
-..++|.++.++++.+... . .-.+-|.|+|++|+|||+||+.+++..... |-..- +...-
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~--f~~is~~~~~~~~~g~ 92 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP--FFHISGSDFVELFVGV 92 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--EEEEEGGGTTTCCTTH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--eeeCCHHHHHHHHhcc
Confidence 4467888887766665432 1 123458899999999999999999876432 32211 00000
Q ss_pred chhhHHHHHHHHhccCcEEEEEcCCCCcc----------------cccccccccC--CCCCCeEEEEeecChHHhh-hcC
Q 048213 167 ESGRARSLCNRLKKEKMILVILDNIWENL----------------DFHAVGIPHG--DDHKGCKVLLTARSLDVLS-RKM 227 (532)
Q Consensus 167 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~gs~ilvTtr~~~v~~-~~~ 227 (532)
.......+..........+|+||+++... ....+...+. ....+..||.||....... ...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 11122333333333578999999996531 1112211111 1124567777887765431 112
Q ss_pred C---CCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 228 D---SQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 228 ~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
. -...+.++..+.++-.+++..++......++. ....++..+.|..
T Consensus 173 R~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 173 RPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred ccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 1 22378888888888888887776532211111 1345777888876
No 216
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.69 E-value=1.4e-05 Score=68.05 Aligned_cols=106 Identities=9% Similarity=0.028 Sum_probs=58.3
Q ss_pred cccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHH-HHHHHhccC
Q 048213 106 EAFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARS-LCNRLKKEK 182 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~-l~~~l~~~k 182 (532)
-.++|+...++++.+.+. .....-|.|+|..|+|||++|+.+++... . +...+....... ....+...+
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-----~---~~~~~~~~~~~~~~~~~~~~a~ 75 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-----P---WVSPARVEYLIDMPMELLQKAE 75 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-----C---EECCSSTTHHHHCHHHHHHHTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-----C---eEEechhhCChHhhhhHHHhCC
Confidence 357899888888888765 12334578999999999999999887543 1 111111111111 122222224
Q ss_pred cEEEEEcCCCCcc--cccccccccCCC-CCCeEEEEeecC
Q 048213 183 MILVILDNIWENL--DFHAVGIPHGDD-HKGCKVLLTARS 219 (532)
Q Consensus 183 ~~LlVlDdv~~~~--~~~~l~~~~~~~-~~gs~ilvTtr~ 219 (532)
.-.|++|++.... ....+...+... ..+.++|+||..
T Consensus 76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4678999998652 122222111111 345678877764
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.53 E-value=0.00017 Score=69.80 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=36.7
Q ss_pred ccccchHHHHHHHHHhcCC---------CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 107 AFESRMSTFNDILNALKSP---------DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 5778888888887777521 235799999999999999999998653
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.50 E-value=0.00059 Score=65.86 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=38.1
Q ss_pred cccccchHHHHHHHHHhcC--------------CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 106 EAFESRMSTFNDILNALKS--------------PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~--------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999888877643 2346788999999999999999998763
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.45 E-value=0.0001 Score=66.55 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCC----CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCch---------hhHHHHHHHHhc
Q 048213 114 TFNDILNALKSP----DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESES---------GRARSLCNRLKK 180 (532)
Q Consensus 114 ~~~~i~~~l~~~----~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~---------~~~~~l~~~l~~ 180 (532)
.++.+.+++... ....+.|+|++|+|||+||+.+++....+. ............ .....+.+.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRN-VSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK 115 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTT-CCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC
Confidence 444555555422 127899999999999999999998765432 333221111000 001222333442
Q ss_pred cCcEEEEEcCCCCc--ccccc--ccc-ccCCC-CCCeEEEEeecCh
Q 048213 181 EKMILVILDNIWEN--LDFHA--VGI-PHGDD-HKGCKVLLTARSL 220 (532)
Q Consensus 181 ~k~~LlVlDdv~~~--~~~~~--l~~-~~~~~-~~gs~ilvTtr~~ 220 (532)
. -+|||||++.. ..|.. +.. .+... ..+.++|+||...
T Consensus 116 -~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 116 -V-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp -S-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred -C-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 2 38999999653 33332 211 11111 2355688888753
No 220
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.40 E-value=0.00039 Score=69.95 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=73.8
Q ss_pred hhccccccEEEeccccccC--cccccccccccEEeecccccccc------ccCCcceEEecccccc----CCCCCccccc
Q 048213 388 LGLLTNLQTLCLYYCKLQD--TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRAS----APNPTESEVA 455 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~----~~~~~~~~~~ 455 (532)
|..+++|+.+.+..+ +.. ...+.+ .+|+.+.+. +++..+ .+++|+.+.+.++... ..-....|.+
T Consensus 222 F~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~ 298 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG 298 (401)
T ss_dssp TTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred hhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence 455555666655543 222 123333 456666663 333333 6778888888776431 0123456777
Q ss_pred CCCCCEEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeecC
Q 048213 456 LPKLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICEC 521 (532)
Q Consensus 456 l~~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~c 521 (532)
+++|+.++|.+ +++.++...+ .++.+|+.|.|.. ++..+.+..| .++ +|+.|++.++
T Consensus 299 c~~L~~l~l~~-~i~~I~~~aF----~~c~~L~~l~lp~--~l~~I~~~aF-~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 299 CPKLARFEIPE-SIRILGQGLL----GGNRKVTQLTIPA--NVTQINFSAF-NNT-GIKEVKVEGT 355 (401)
T ss_dssp CTTCCEECCCT-TCCEECTTTT----TTCCSCCEEEECT--TCCEECTTSS-SSS-CCCEEEECCS
T ss_pred CccCCeEEeCC-ceEEEhhhhh----cCCCCccEEEECc--cccEEcHHhC-CCC-CCCEEEEcCC
Confidence 88888888874 4777776652 2567888888853 4777755555 667 8888888765
No 221
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.40 E-value=0.00041 Score=69.79 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=64.4
Q ss_pred cccccccccEEeecccccccc-----ccCCcceEEeccccccCCCCCcccccCCCCCEEecCCcccc-----cccccccc
Q 048213 409 VLGELKILEILRLRVNELTRA-----GSSQLKHLSVRGLRASAPNPTESEVALPKLETVCLSSINIE-----RIWQNQVA 478 (532)
Q Consensus 409 ~i~~l~~L~~L~l~~~~l~~~-----~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~~~~ 478 (532)
.+.++++|+.+.+..+ +..+ .-.+|+.+.+.++ . ..-....|.++++|+.+++.++.+. .++...+
T Consensus 221 aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i-~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF- 296 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-V-TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL- 296 (401)
T ss_dssp TTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-C-CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT-
T ss_pred HhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-c-cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh-
Confidence 4555566666666542 3333 1245666666443 1 1223456788888999988887554 4555541
Q ss_pred cccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeec
Q 048213 479 AMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICE 520 (532)
Q Consensus 479 ~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~ 520 (532)
.++++|+.+.|. +.++.++...| .++++|+.|.|..
T Consensus 297 ---~~c~~L~~l~l~--~~i~~I~~~aF-~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 297 ---EGCPKLARFEIP--ESIRILGQGLL-GGNRKVTQLTIPA 332 (401)
T ss_dssp ---TTCTTCCEECCC--TTCCEECTTTT-TTCCSCCEEEECT
T ss_pred ---hCCccCCeEEeC--CceEEEhhhhh-cCCCCccEEEECc
Confidence 357889999887 35888855555 7889999998843
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.40 E-value=0.00075 Score=73.14 Aligned_cols=167 Identities=11% Similarity=0.130 Sum_probs=94.8
Q ss_pred ccccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---EeccCc-
Q 048213 105 YEAFESRMSTFNDILNALK----S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEESE- 167 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~~~- 167 (532)
...+.|-++.+++|.+.+. . ..++-|.++|++|+|||+||+++++..... |-.+- +.....
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~--~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAG 280 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE--EEEEEHHHHHSSCTT
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe--EEEEEhHHhhcccch
Confidence 4457787777777766543 1 245789999999999999999999876543 21111 011111
Q ss_pred --hhhHHHHHHHHhccCcEEEEEcCCCCccc-------------ccccccccC--CCCCCeEEEEeecChHHhhhcC---
Q 048213 168 --SGRARSLCNRLKKEKMILVILDNIWENLD-------------FHAVGIPHG--DDHKGCKVLLTARSLDVLSRKM--- 227 (532)
Q Consensus 168 --~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs~ilvTtr~~~v~~~~~--- 227 (532)
......+.+.......++|++|+++.... ...+...+. ....+..||.||..........
T Consensus 281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~ 360 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360 (806)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTST
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCC
Confidence 12334444444445789999999975310 011111110 1123445666766554331111
Q ss_pred -CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 228 -DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 228 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
.-...+.+...+.++-.++|..+........+. ....|++.+.|.-
T Consensus 361 GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCC
T ss_pred cccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCC
Confidence 123478888888888889988776422211111 1456777777763
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.36 E-value=0.0033 Score=58.73 Aligned_cols=165 Identities=14% Similarity=0.125 Sum_probs=85.9
Q ss_pred cccccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc-----C
Q 048213 104 DYEAFESRMSTFNDILNALK---S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE-----S 166 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~-----~ 166 (532)
....++|.++.+.++.+... . .-.+-+.|+|+.|+||||||+.++...... | ...... .
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~--~--i~~~~~~~~~~~ 89 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP--F--ITASGSDFVEMF 89 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC--E--EEEEHHHHHHSC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E--EEeeHHHHHHHH
Confidence 34567787766655544322 1 112338999999999999999999875421 1 111110 0
Q ss_pred chh---hHHHHHHHHhccCcEEEEEcCCCCcc------------c----ccccccccCCC--CCCeEEEEeecChHHhhh
Q 048213 167 ESG---RARSLCNRLKKEKMILVILDNIWENL------------D----FHAVGIPHGDD--HKGCKVLLTARSLDVLSR 225 (532)
Q Consensus 167 ~~~---~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~~--~~gs~ilvTtr~~~v~~~ 225 (532)
... ....+.+........++++|+++... . ...+...+... ....-++.||........
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~ 169 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 169 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCG
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCH
Confidence 111 12233333332345899999995321 0 11221122111 223345566666654421
Q ss_pred -cC---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCc
Q 048213 226 -KM---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGL 274 (532)
Q Consensus 226 -~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 274 (532)
.. .-...+.++..+.++-.+++...+.......+. ....++..+.|.
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~ 220 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGF 220 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTC
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc--CHHHHHHHcCCC
Confidence 11 223467888888888888887766422111111 133566666664
No 224
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.35 E-value=0.00016 Score=68.08 Aligned_cols=85 Identities=24% Similarity=0.230 Sum_probs=48.1
Q ss_pred hccccccEEEeccccccCcc----cccccccccEEeeccccccccccCCcceEEeccccccCCCCCcccccCCCCCEEec
Q 048213 389 GLLTNLQTLCLYYCKLQDTS----VLGELKILEILRLRVNELTRAGSSQLKHLSVRGLRASAPNPTESEVALPKLETVCL 464 (532)
Q Consensus 389 ~~l~~L~~L~l~~~~l~~~~----~i~~l~~L~~L~l~~~~l~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~L 464 (532)
.++++|+.|+|++|.+..++ .+..+++|++|+|++|++..+ .....+..+ +|++|+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~------------------~~l~~l~~l-~L~~L~L 227 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE------------------RELDKIKGL-KLEELWL 227 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG------------------GGGGGGTTS-CCSEEEC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc------------------hhhhhcccC-CcceEEc
Confidence 45678888888888887743 334677777777777766543 001112223 6777777
Q ss_pred CCccccc-cccc--ccccccccCCCccEEEe
Q 048213 465 SSINIER-IWQN--QVAAMSCGIQNLKRLIL 492 (532)
Q Consensus 465 ~~~~l~~-lp~~--~~~~~~~~L~~L~~L~L 492 (532)
++|.+.. +|.. ........+++|+.||=
T Consensus 228 ~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 228 DGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 7776653 2211 00011134677777654
No 225
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.21 E-value=0.002 Score=61.10 Aligned_cols=145 Identities=12% Similarity=0.128 Sum_probs=81.0
Q ss_pred cccccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccC----
Q 048213 104 DYEAFESRMSTFNDILNALK----S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEES---- 166 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~----~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~---- 166 (532)
.-..+.|-++.+++|.+.+. . .-.+-+.|+|++|+||||||+.++...... .......+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~----~i~i~g~~l~~~ 83 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN----FISVKGPELLNM 83 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEEETTTTCSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC----EEEEEcHHHHhh
Confidence 34567777777777766442 1 112339999999999999999999865431 11111111
Q ss_pred -ch---hhHHHHHHHHhccCcEEEEEcCCCCccc---------c----cccccccCC--CCCCeEEEEeecChHHhhhc-
Q 048213 167 -ES---GRARSLCNRLKKEKMILVILDNIWENLD---------F----HAVGIPHGD--DHKGCKVLLTARSLDVLSRK- 226 (532)
Q Consensus 167 -~~---~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~----~~l~~~~~~--~~~gs~ilvTtr~~~v~~~~- 226 (532)
.. ..+..+.+.......+++++|+++.... . ..+...+.. .....-++.+|....+....
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 11 1233444443234678999999975310 0 011111111 12344566777776654211
Q ss_pred C---CCCceEEccCCCHHHHHHHHHHHhC
Q 048213 227 M---DSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 227 ~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
. .-...+.++..+.++-.++|.....
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 1 2345678888899888899887663
No 226
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.18 E-value=0.007 Score=57.36 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=88.1
Q ss_pred ccccccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc-----
Q 048213 103 KDYEAFESRMSTFNDILNALK---S---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE----- 165 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~---~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~----- 165 (532)
.....++|.++.++++.+... . .-.+-+.|+|+.|+||||||+.++...... | ......
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~--~--i~~~~~~~~~~ 112 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP--F--ITASGSDFVEM 112 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCC--E--EEEEHHHHHHS
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCC--E--EEecHHHHHHH
Confidence 335567888777666554332 1 011238999999999999999999876421 1 111111
Q ss_pred Cch---hhHHHHHHHHhccCcEEEEEcCCCCcc------------c----ccccccccCCC--CCCeEEEEeecChHHhh
Q 048213 166 SES---GRARSLCNRLKKEKMILVILDNIWENL------------D----FHAVGIPHGDD--HKGCKVLLTARSLDVLS 224 (532)
Q Consensus 166 ~~~---~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~~--~~gs~ilvTtr~~~v~~ 224 (532)
... .....+.+........++++|++.... . ...+...+... .....++.||.......
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld 192 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 192 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCC
Confidence 011 112233333332356899999995321 0 11121222211 12234555666554431
Q ss_pred h-c---CCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 225 R-K---MDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 225 ~-~---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
. . ..-...+.+...+.++-.+++...+......++. ....++..+.|..
T Consensus 193 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 1 1 1233578888888888888888766422111111 1345666666654
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.18 E-value=0.00035 Score=65.98 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=34.1
Q ss_pred cccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 106 EAFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..++|....+.++.+.+. ......|.|+|..|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 357899888888876664 22335678999999999999999988643
No 228
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.14 E-value=0.0016 Score=68.08 Aligned_cols=144 Identities=20% Similarity=0.149 Sum_probs=76.3
Q ss_pred cccccchHHHHHHHHHhc------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEec-cCc-----------
Q 048213 106 EAFESRMSTFNDILNALK------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVE-ESE----------- 167 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~-~~~----------- 167 (532)
..++|-++..+.+.+.+. ......+.++|++|+||||||+.++...... |-...... ...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~i~~~~~~~~~~~~g~~~~~i 158 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK--FVRISLGGVRDESEIRGHRRTYV 158 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE--EEEECCCC---------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--eEEEEecccchhhhhhhHHHHHh
Confidence 346787777776655433 2345689999999999999999999875322 21111000 000
Q ss_pred hhhHHHHHHHHhc--cCcEEEEEcCCCCccc------ccccccccCCC---------------CCCeEEEEeecChHHh-
Q 048213 168 SGRARSLCNRLKK--EKMILVILDNIWENLD------FHAVGIPHGDD---------------HKGCKVLLTARSLDVL- 223 (532)
Q Consensus 168 ~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~------~~~l~~~~~~~---------------~~gs~ilvTtr~~~v~- 223 (532)
......+.+.+.. ..+-++++|+++.... ...+...+... .....+|.||......
T Consensus 159 g~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~ 238 (543)
T 3m6a_A 159 GAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIP 238 (543)
T ss_dssp -----CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSC
T ss_pred ccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCC
Confidence 0011122222221 1445889999985421 12232222110 0334666666654321
Q ss_pred hhcCCCCceEEccCCCHHHHHHHHHHHh
Q 048213 224 SRKMDSQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 224 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
........++.+.+++.++-.+++..+.
T Consensus 239 ~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 239 GPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred HHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 0011112468899999888888877654
No 229
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.12 E-value=0.0041 Score=63.91 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=90.3
Q ss_pred ccccccchHHHHHHHHHhc---CC---------CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEecc-----Cc
Q 048213 105 YEAFESRMSTFNDILNALK---SP---------DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEE-----SE 167 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~---~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~-----~~ 167 (532)
...++|.++.+.++.+... .. -.+-+.|+|++|+|||+||+.++...... | ...... ..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~--~--i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP--F--ITASGSDFVEMFV 105 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC--E--EEEEGGGGTSSCT
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E--EEEehhHHHHhhh
Confidence 4567888877766655432 11 12348999999999999999999876421 2 111111 11
Q ss_pred hhhHHHHHHHHhcc---CcEEEEEcCCCCccc----------------ccccccccCC--CCCCeEEEEeecChHHhhh-
Q 048213 168 SGRARSLCNRLKKE---KMILVILDNIWENLD----------------FHAVGIPHGD--DHKGCKVLLTARSLDVLSR- 225 (532)
Q Consensus 168 ~~~~~~l~~~l~~~---k~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~gs~ilvTtr~~~v~~~- 225 (532)
......+...+... ...++++|+++.... ...+...+.. ...+..++.||........
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 12223333333322 347999999964310 1122111211 1234456667776655321
Q ss_pred cC---CCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCch
Q 048213 226 KM---DSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAKKCAGLP 275 (532)
Q Consensus 226 ~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 275 (532)
.. .-...+.++..+.++-.+++..++......++. ....|+..+.|..
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 11 123478899889888888888765422111111 1345667777764
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.10 E-value=0.0014 Score=71.78 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=77.8
Q ss_pred cccccchHHHHHHHHHhcC---------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCc----hhhHH
Q 048213 106 EAFESRMSTFNDILNALKS---------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESE----SGRAR 172 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~----~~~~~ 172 (532)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..... .......+.... .....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~~s~~~~~~~~~~~ 569 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-EESMIRIDMSEYMEKHSTSGG 569 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEEGGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEechhcccccccccc
Confidence 4588999988888877761 112369999999999999999999875321 112221111100 00022
Q ss_pred HHHHHHhccCcEEEEEcCCCCcc--cccccccccCC-----------CCCCeEEEEeecCh-----HHh--------h-h
Q 048213 173 SLCNRLKKEKMILVILDNIWENL--DFHAVGIPHGD-----------DHKGCKVLLTARSL-----DVL--------S-R 225 (532)
Q Consensus 173 ~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~-----------~~~gs~ilvTtr~~-----~v~--------~-~ 225 (532)
.+...+......+|+||++.... ..+.+...+.. .....+||.||... .+. . -
T Consensus 570 ~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l 649 (758)
T 3pxi_A 570 QLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEF 649 (758)
T ss_dssp -CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHH
T ss_pred hhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHH
Confidence 33333433345689999997542 12222111100 12356788888731 100 0 0
Q ss_pred cCCCCceEEccCCCHHHHHHHHHHH
Q 048213 226 KMDSQQDFWVGVLKEDEAWSLFKKM 250 (532)
Q Consensus 226 ~~~~~~~~~l~~L~~~~~~~Lf~~~ 250 (532)
......++.+.+++.++-..++...
T Consensus 650 ~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 650 INRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp HTTSSEEEECC--CHHHHHHHHHHH
T ss_pred HhhCCeEEecCCCCHHHHHHHHHHH
Confidence 1122347888899888877776654
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.06 E-value=0.00064 Score=65.24 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=39.0
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE---EeccCchhh---HHHHHHHH----hccCcEEEEEcCCCC
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI---FVEESESGR---ARSLCNRL----KKEKMILVILDNIWE 193 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---~~~~~~~~~---~~~l~~~l----~~~k~~LlVlDdv~~ 193 (532)
..+.+.++|++|+|||+||+.+++..... |-..- +........ ...+.+.. ...+..+|+||+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~--~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC--CEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 34678899999999999999999987432 32211 000001111 22222222 234778999999963
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.01 E-value=0.00079 Score=64.95 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 107 AFESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.++|+...+.++.+.+. ......|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 57899888888887765 2334567899999999999999998854
No 233
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.95 E-value=0.0014 Score=67.16 Aligned_cols=90 Identities=13% Similarity=0.029 Sum_probs=53.8
Q ss_pred ccccccchHHHHHHHHHh---cCC--CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE----Eec-cCchhhHHHH
Q 048213 105 YEAFESRMSTFNDILNAL---KSP--DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI----FVE-ESESGRARSL 174 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l---~~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~----~~~-~~~~~~~~~l 174 (532)
...++|.++.++.+..++ ..+ ..+-+.++|++|+|||++|+.+++.......|-..- +.. .........+
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMEN 115 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHH
Confidence 467889998877654433 333 336789999999999999999999865332232221 000 0111112222
Q ss_pred HHHH---hccCcEEEEEcCCCCc
Q 048213 175 CNRL---KKEKMILVILDNIWEN 194 (532)
Q Consensus 175 ~~~l---~~~k~~LlVlDdv~~~ 194 (532)
.+.. ......+|++|+++..
T Consensus 116 f~~a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 116 FRRAIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp HHHTEEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHhhhhcCCcEEEEechhhc
Confidence 2222 2235789999999643
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.83 E-value=0.0036 Score=68.54 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=36.6
Q ss_pred cccccchHHHHHHHHHhcC---------CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 106 EAFESRMSTFNDILNALKS---------PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++|.++.++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3578998888888777651 123478999999999999999999876
No 235
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.69 E-value=0.0023 Score=54.54 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=41.5
Q ss_pred HHHhcCCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 119 LNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 119 ~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
+..+..-....++|+|+.|+|||||++.+++..... .+............. .+. .+.-+||+||+...
T Consensus 28 ~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~~~~~~------~~~-~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 28 VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAASMPLT------DAA-FEAEYLAVDQVEKL 95 (149)
T ss_dssp HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETTTSCCC------GGG-GGCSEEEEESTTCC
T ss_pred HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHHHhhHH------HHH-hCCCEEEEeCcccc
Confidence 333433255789999999999999999999876542 233333222211111 112 23458899998764
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.62 E-value=0.0029 Score=60.63 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=40.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEE-E-----EeccCchhhHHHHHHHHhccCcEEEEEcCCCCc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRV-I-----FVEESESGRARSLCNRLKKEKMILVILDNIWEN 194 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~-~-----~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 194 (532)
+++.|+|++|+|||+||.+++.....+-.|-.. . ....+.......+.+.+.+ .+ +||+|++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~-~~-LLVIDsI~aL 194 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ-HR-VIVIDSLKNV 194 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH-CS-EEEEECCTTT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh-CC-EEEEeccccc
Confidence 567899999999999999998762211112111 0 0012233445556677764 45 9999998653
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.46 E-value=0.0018 Score=57.26 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.3
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
|.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998764
No 238
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.40 E-value=0.0028 Score=61.18 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++.+||+|.|-||+||||.|..++.-...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 56799999999999999999887665443
No 239
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.40 E-value=0.0032 Score=56.57 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHhcC---CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 110 SRMSTFNDILNALKS---PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 110 gR~~~~~~i~~~l~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.|++.++++.+.+.. ....+|+|.|+.|+||||+++.+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355667777777763 3457999999999999999999987543
No 240
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.37 E-value=0.0064 Score=67.35 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=36.6
Q ss_pred cccccchHHHHHHHHHhcC---------CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 106 EAFESRMSTFNDILNALKS---------PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++|.+..++.+...+.. .....+.|+|+.|+|||++|+.+++..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999988888777651 123578999999999999999998865
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.35 E-value=0.0037 Score=68.53 Aligned_cols=146 Identities=12% Similarity=0.135 Sum_probs=83.1
Q ss_pred cccccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEE----eccC
Q 048213 104 DYEAFESRMSTFNDILNALKS-------------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIF----VEES 166 (532)
Q Consensus 104 ~~~~~~gR~~~~~~i~~~l~~-------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~----~~~~ 166 (532)
....++|.+..+++|.+++.. .....|.|+|++|+||||||+.++...... | ..+. ....
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~-i~v~~~~l~~~~ 278 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--F-FLINGPEIMSKL 278 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--E-EEEEHHHHSSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--E-EEEEchHhhhhh
Confidence 345688988888888877641 334679999999999999999998864322 2 1110 0001
Q ss_pred ---chhhHHHHHHHHhccCcEEEEEcCCCCccc-------------ccccccccC--CCCCCeEEEEeecChHHhhhcC-
Q 048213 167 ---ESGRARSLCNRLKKEKMILVILDNIWENLD-------------FHAVGIPHG--DDHKGCKVLLTARSLDVLSRKM- 227 (532)
Q Consensus 167 ---~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs~ilvTtr~~~v~~~~~- 227 (532)
.......+.+........++++|++..... ...+...+. ....+..+|.||..........
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~ 358 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHh
Confidence 112233333333334678999999953310 011111111 0122445566665543221111
Q ss_pred ---CCCceEEccCCCHHHHHHHHHHHhC
Q 048213 228 ---DSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 228 ---~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
.-...+.+...+.++-.+++...+.
T Consensus 359 r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 359 RFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp STTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cccccccccccCCCCHHHHHHHHHHHHh
Confidence 1224577888888888898887664
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.26 E-value=0.0043 Score=56.07 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcC--CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 113 STFNDILNALKS--PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 113 ~~~~~i~~~l~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+.+++|.+.+.. ....+|+|+|+.|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455666666653 4568999999999999999999987654
No 243
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.23 E-value=0.0061 Score=50.44 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=21.9
Q ss_pred CCCEEecCCcccccccccccccccccCCCccEEEeccC
Q 048213 458 KLETVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNC 495 (532)
Q Consensus 458 ~L~~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c 495 (532)
+|++|+|++|+|+.+|...+ ..+++|++|+|.++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f----~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLL----DALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTG----GGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhh----hhccccCEEEecCC
Confidence 56777777777777766652 24666777777654
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.16 E-value=0.0039 Score=60.14 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcC---CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 112 MSTFNDILNALKS---PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 112 ~~~~~~i~~~l~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...++.+.+++.. .....+.|+|+.|+|||+||..+++...
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444455542 1247889999999999999999998765
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.15 E-value=0.011 Score=58.65 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999876
No 246
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.06 E-value=0.043 Score=53.56 Aligned_cols=154 Identities=6% Similarity=-0.092 Sum_probs=95.5
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCE-EEEeccCchhhHHHHHHHHh----ccCcEEEEEcCCCC-c--cc
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDR-VIFVEESESGRARSLCNRLK----KEKMILVILDNIWE-N--LD 196 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~-~--~~ 196 (532)
.-.++..++|+.|.||++.|..+.+..... .|+. ...... .......+.+.+. .+.+-++|+|++.. . +.
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~ 93 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSID-PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAI 93 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECC-TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEec-CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHH
Confidence 445789999999999999999988764322 2432 111111 1233344444432 24677889999865 2 45
Q ss_pred ccccccccCCCCCCeEEEEeecC-------hHHhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048213 197 FHAVGIPHGDDHKGCKVLLTARS-------LDVLSRKMDSQQDFWVGVLKEDEAWSLFKKMAGDYIEGSEFKWVAKDVAK 269 (532)
Q Consensus 197 ~~~l~~~~~~~~~gs~ilvTtr~-------~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~ 269 (532)
++.+...+..-..++.+|+++.. ..+.........++...+++.++....+.+.+.... ..-..+.+..+++
T Consensus 94 ~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~ 172 (343)
T 1jr3_D 94 NEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLN-LELDDAANQVLCY 172 (343)
T ss_dssp HHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTT-CEECHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 56665444333456777766643 233333344456889999999998888777653111 1222567888999
Q ss_pred HcCCchHHHHHH
Q 048213 270 KCAGLPVSIVTV 281 (532)
Q Consensus 270 ~c~glPLai~~~ 281 (532)
.++|.+.++...
T Consensus 173 ~~~gdl~~~~~e 184 (343)
T 1jr3_D 173 CYEGNLLALAQA 184 (343)
T ss_dssp SSTTCHHHHHHH
T ss_pred HhchHHHHHHHH
Confidence 999988776553
No 247
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.97 E-value=0.023 Score=56.72 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=78.0
Q ss_pred hhccccccEEEeccccccC-cccccccccccEEeecccccccc---ccCCcceEEeccccccCCCCCcccccCCCCCEEe
Q 048213 388 LGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA---GSSQLKHLSVRGLRASAPNPTESEVALPKLETVC 463 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~---~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 463 (532)
+..+.+++.+.+..+...- ...+..+..+..+....+.+... .+.+|+.+.+.++-. .-....|.+..+|+.++
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~--~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVK--FIGEEAFESCTSLVSID 326 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCC--EECTTTTTTCTTCCEEC
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccccc--eechhhhcCCCCCCEEE
Confidence 4455566666665443221 33455666666666655444333 667788888866511 22345677888899998
Q ss_pred cCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEeec
Q 048213 464 LSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEICE 520 (532)
Q Consensus 464 L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~~ 520 (532)
|.. +++.+++..+ .++.+|+.+.+.. +++.+....| .++++|+.+++..
T Consensus 327 lp~-~v~~I~~~aF----~~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 327 LPY-LVEEIGKRSF----RGCTSLSNINFPL--SLRKIGANAF-QGCINLKKVELPK 375 (394)
T ss_dssp CCT-TCCEECTTTT----TTCTTCCEECCCT--TCCEECTTTB-TTCTTCCEEEEEG
T ss_pred eCC-cccEEhHHhc----cCCCCCCEEEECc--cccEehHHHh-hCCCCCCEEEECC
Confidence 875 4777766651 2578899988864 3778855555 7888899888753
No 248
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.97 E-value=0.016 Score=54.10 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=27.1
Q ss_pred HHHHHHhcCC--CceEEEEEccCCCchHHHHHHHHHH
Q 048213 116 NDILNALKSP--DVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 116 ~~i~~~l~~~--~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-+..|+... ....+.++|++|.|||.+|.++++.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 4455555532 2457999999999999999999985
No 249
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.95 E-value=0.0043 Score=60.90 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=36.4
Q ss_pred ccccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 103 KDYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+-..++|.+..+..+..........-+.|+|++|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 33456889988666654444333334589999999999999999998653
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.88 E-value=0.0047 Score=54.05 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=21.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998864
No 251
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.87 E-value=0.0047 Score=53.61 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=22.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999987654
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.80 E-value=0.0045 Score=53.80 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=18.9
Q ss_pred eEEEEEccCCCchHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEV 147 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v 147 (532)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 253
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.76 E-value=0.018 Score=62.41 Aligned_cols=147 Identities=12% Similarity=0.180 Sum_probs=78.1
Q ss_pred ccccccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-------E
Q 048213 103 KDYEAFESRMSTFNDILNALK-------------SPDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-------F 162 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-------~ 162 (532)
.....+.|.++.+++|.+.+. -...+-|.++|++|.|||.+|+++++..... |-..- +
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~--f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMW 551 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE--EEECCHHHHHTTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc--eEEeccchhhccc
Confidence 334556777777777766543 1134568899999999999999999876532 11110 1
Q ss_pred eccCchhhHHHHHHHHhccCcEEEEEcCCCCcc--------c--------ccccccccCC--CCCCeEEEEeecChHHh-
Q 048213 163 VEESESGRARSLCNRLKKEKMILVILDNIWENL--------D--------FHAVGIPHGD--DHKGCKVLLTARSLDVL- 223 (532)
Q Consensus 163 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~--------~~~l~~~~~~--~~~gs~ilvTtr~~~v~- 223 (532)
.. .....+..+++.-.....++|++|+++... . ...+...+.. ...+.-||.||......
T Consensus 552 vG-ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 552 FG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp CS-SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSC
T ss_pred cc-hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCC
Confidence 11 123345566666555578999999997531 0 1112111111 12333444466544332
Q ss_pred hhcC---CCCceEEccCCCHHHHHHHHHHHhC
Q 048213 224 SRKM---DSQQDFWVGVLKEDEAWSLFKKMAG 252 (532)
Q Consensus 224 ~~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 252 (532)
.... .-...+.+...+.++-.++|..+..
T Consensus 631 ~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~ 662 (806)
T 3cf2_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp HHHHSTTTSCCEEEC-----CHHHHTTTTTSS
T ss_pred HhHcCCCcceEEEEECCcCHHHHHHHHHHHhc
Confidence 1111 2335677776666666677665543
No 254
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.75 E-value=0.011 Score=58.03 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=58.0
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhcc--CC---------CC-----EEEE---eccCchhhHHHHHHHHhccCcEEE
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENE--KL---------FD-----RVIF---VEESESGRARSLCNRLKKEKMILV 186 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~---------F~-----~~~~---~~~~~~~~~~~l~~~l~~~k~~Ll 186 (532)
.-.+++|+|+.|+|||||.+.+....... .. |. ..+. ...........+...|.. ..=+|
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~-~Pdvi 200 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALRE-DPDII 200 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTS-CCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhh-CcCEE
Confidence 33599999999999999999987643321 00 00 0010 001112344567777775 66788
Q ss_pred EEcCCCCcccccccccccCCCCCCeEEEEeecChHHh
Q 048213 187 ILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDVL 223 (532)
Q Consensus 187 VlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v~ 223 (532)
++|.+.+.+.++.+... ...|..||+|+.....+
T Consensus 201 llDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 201 LVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred ecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 99999877665554322 23466688888876654
No 255
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.70 E-value=0.0067 Score=54.32 Aligned_cols=27 Identities=30% Similarity=0.202 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+|+|+|+.|+||||+|+.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999987653
No 256
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.66 E-value=0.01 Score=57.16 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=24.0
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
....++|+|+|-||+||||+|..++.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~ 67 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI 67 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 456789999999999999999988776543
No 257
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.63 E-value=0.0065 Score=53.45 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998754
No 258
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.60 E-value=0.0073 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
..+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999875
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.59 E-value=0.007 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.5
Q ss_pred eEEEEEccCCCchHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.58 E-value=0.0059 Score=53.11 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987643
No 261
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.56 E-value=0.0074 Score=53.16 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987653
No 262
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.56 E-value=0.033 Score=56.26 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..++|+|.+|+|||||+..+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh
Confidence 46899999999999999999876553
No 263
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.52 E-value=0.014 Score=56.70 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHhc----CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 110 SRMSTFNDILNALK----SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 110 gR~~~~~~i~~~l~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+-+...+++++.+. .+....|.|+|+.|+||||+++.++....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33445566665553 45567799999999999999999987654
No 264
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.49 E-value=0.0088 Score=53.57 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=25.1
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.....+|+|+|+.|+||||+|+.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999988764
No 265
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.48 E-value=0.0078 Score=58.61 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=37.6
Q ss_pred cccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 106 EAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..++|+++.++.+...+..+ .-+.++|++|+|||+||+.+++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46789999998888877654 4688999999999999999988653
No 266
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.47 E-value=0.0091 Score=53.45 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
....+++|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 445799999999999999999998754
No 267
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.44 E-value=0.024 Score=55.61 Aligned_cols=36 Identities=14% Similarity=-0.062 Sum_probs=27.6
Q ss_pred HHHHHHhc-CCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 116 NDILNALK-SPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 116 ~~i~~~l~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-++++.+. -..-..++|+|++|+|||||++.+.+..
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 35556555 2344789999999999999999988754
No 268
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.43 E-value=0.0075 Score=54.07 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 269
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.42 E-value=0.013 Score=53.38 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 114 TFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 114 ~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..+.+...+.......|+|+|.+|+|||||+..+.....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344444444455678999999999999999999987653
No 270
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.36 E-value=0.018 Score=54.83 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
....+|+|+|+.|+||||||+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999877554
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.35 E-value=0.01 Score=52.53 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999988754
No 272
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.34 E-value=0.0092 Score=61.35 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=37.8
Q ss_pred cccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 106 EAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..++|+++.++.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 46889999998888877655 4688999999999999999988653
No 273
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.31 E-value=0.012 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 274
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.29 E-value=0.01 Score=55.32 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.++.|.|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5789999999999999999987643
No 275
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.28 E-value=0.011 Score=52.31 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988654
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.27 E-value=0.011 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+++|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998753
No 277
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.27 E-value=0.0099 Score=53.26 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999998753
No 278
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.26 E-value=0.01 Score=52.10 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.++|.|.|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3678999999999999999998764
No 279
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.26 E-value=0.018 Score=56.85 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=36.8
Q ss_pred ccccchHHHHHHHHHhc-------------C--CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 107 AFESRMSTFNDILNALK-------------S--PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 107 ~~~gR~~~~~~i~~~l~-------------~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46898888888887772 1 1346789999999999999999998763
No 280
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.26 E-value=0.011 Score=53.23 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+++|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987643
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.25 E-value=0.018 Score=54.74 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 282
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.24 E-value=0.013 Score=53.09 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 112 MSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 112 ~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+..+.+.+.+.....++|+|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44455555555455678999999999999999999987753
No 283
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.22 E-value=0.01 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.289 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.++|+|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4789999999999999999998765
No 284
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.21 E-value=0.014 Score=50.62 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..++++|+|+.|+|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4578999999999999999999886543
No 285
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.18 E-value=0.0094 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999987643
No 286
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.18 E-value=0.031 Score=56.18 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999988766543
No 287
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.18 E-value=0.01 Score=51.71 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+.|.|.|++|+||||+|+.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987653
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.18 E-value=0.012 Score=53.03 Aligned_cols=27 Identities=30% Similarity=0.222 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 447899999999999999999988643
No 289
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.17 E-value=0.012 Score=50.89 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987644
No 290
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.16 E-value=0.012 Score=52.08 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.3
Q ss_pred eEEEEEccCCCchHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 291
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.16 E-value=0.013 Score=52.31 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHH
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999875
No 292
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.15 E-value=0.014 Score=52.20 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
....+|+|.|+.|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998754
No 293
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.15 E-value=0.015 Score=51.25 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=24.1
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+|.|.|++|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999887553
No 294
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.13 E-value=0.013 Score=52.49 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998754
No 295
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.13 E-value=0.012 Score=52.47 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999988654
No 296
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.11 E-value=0.044 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-.++.|+|++|+||||||.+++....
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999987654
No 297
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.11 E-value=0.014 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 298
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.08 E-value=0.055 Score=53.51 Aligned_cols=122 Identities=15% Similarity=0.106 Sum_probs=70.1
Q ss_pred hhccccccEEEeccccccC-cccccccccccEEeecccccccc------ccCCcceEEeccccccCCCCCcccccCCCCC
Q 048213 388 LGLLTNLQTLCLYYCKLQD-TSVLGELKILEILRLRVNELTRA------GSSQLKHLSVRGLRASAPNPTESEVALPKLE 460 (532)
Q Consensus 388 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~~------~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~L~ 460 (532)
+....+|..+.+..+-..- ...+..+.+|+.+.+..+ ++.+ .+..|+.+.+..+-. ......|.++.+|+
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~--~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVK--TVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCS--EECTTTTTTCTTCC
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccce--eccccccccccccc
Confidence 3344555555554331111 234556667777776543 3333 456677777655411 22234566777788
Q ss_pred EEecCCcccccccccccccccccCCCccEEEeccCCCCCccchhhhhhcCCCccEEEee
Q 048213 461 TVCLSSINIERIWQNQVAAMSCGIQNLKRLILFNCWNLTCLFTSSIISSFVGLQCLEIC 519 (532)
Q Consensus 461 ~L~L~~~~l~~lp~~~~~~~~~~L~~L~~L~L~~c~~l~~l~p~~~~~~L~~L~~L~l~ 519 (532)
.+.+.++.++.+++..+ .++.+|+.+.|. ..++.+....| .++++|+.+.|.
T Consensus 290 ~i~l~~~~i~~I~~~aF----~~c~~L~~i~lp--~~l~~I~~~aF-~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVF----MDCVKLSSVTLP--TALKTIQVYAF-KNCKALSTISYP 341 (379)
T ss_dssp EEEECCTTCCEECTTTT----TTCTTCCEEECC--TTCCEECTTTT-TTCTTCCCCCCC
T ss_pred cccccccccceehhhhh----cCCCCCCEEEcC--ccccEEHHHHh-hCCCCCCEEEEC
Confidence 88887777777766652 256778877775 24666644444 567777776663
No 299
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.07 E-value=0.013 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 300
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.06 E-value=0.014 Score=51.69 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999988754
No 301
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.05 E-value=0.011 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
++|+|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987643
No 302
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.04 E-value=0.015 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCchHHHHHHHHHH
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
....|+|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 303
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.02 E-value=0.014 Score=54.41 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=23.6
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.....+|+|.|+.|+||||+|+.+.....
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567899999999999999999987543
No 304
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.01 E-value=0.02 Score=55.22 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=29.9
Q ss_pred ccchHHHHHHHHHhcC----CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 109 ESRMSTFNDILNALKS----PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 109 ~gR~~~~~~i~~~l~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+|....+..+...+.. ....+|+|.|+.|+||||+|+.+..-..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444444432 3456999999999999999999876543
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.01 E-value=0.013 Score=52.50 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=20.4
Q ss_pred eEEEEEccCCCchHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 306
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.00 E-value=0.01 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.3
Q ss_pred ceEEEEEccCCCchHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVA 148 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~ 148 (532)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 307
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.99 E-value=0.014 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 308
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.97 E-value=0.041 Score=49.59 Aligned_cols=67 Identities=13% Similarity=0.014 Sum_probs=40.5
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhcc---C----------CCCEEEEeccCchhhHHHHHHHHhc----cCcEEEE
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAENE---K----------LFDRVIFVEESESGRARSLCNRLKK----EKMILVI 187 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~----------~F~~~~~~~~~~~~~~~~l~~~l~~----~k~~LlV 187 (532)
.....|.|+|.+|+|||||...+....... . .+...+++..........+...+.. ..-+++|
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v 89 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 89 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEE
Confidence 345678999999999999999998754211 0 1122235544444433444444432 2457788
Q ss_pred EcCC
Q 048213 188 LDNI 191 (532)
Q Consensus 188 lDdv 191 (532)
+|-.
T Consensus 90 ~D~~ 93 (218)
T 1nrj_B 90 VDST 93 (218)
T ss_dssp EETT
T ss_pred EECC
Confidence 8765
No 309
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.97 E-value=0.012 Score=52.64 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998754
No 310
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.95 E-value=0.016 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.6
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..|+|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 311
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.94 E-value=0.028 Score=51.96 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
....+|+|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998754
No 312
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.94 E-value=0.058 Score=66.00 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=19.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
+-|.++|++|+|||++|+.+...
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHhc
Confidence 57789999999999999777654
No 313
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.93 E-value=0.024 Score=53.99 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.++|+|.|-||+||||+|..++.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 468888999999999999998876543
No 314
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.93 E-value=0.024 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++|+|.|-||+||||+|..++.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 57888999999999999998876553
No 315
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.92 E-value=0.015 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+|+|.|+.|+||||+|+.+.....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988643
No 316
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.92 E-value=0.015 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
..+|+|+|+.|+||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999999764
No 317
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.91 E-value=0.013 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.200 Sum_probs=22.0
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
++|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987643
No 318
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.86 E-value=0.017 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998763
No 319
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.86 E-value=0.017 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...+++|+|+.|+|||||++.++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998654
No 320
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.85 E-value=0.018 Score=51.67 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.+|+|.|+.|+||||+|+.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 68999999999999999999987654
No 321
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.84 E-value=0.018 Score=51.27 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..++++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34789999999999999999998764
No 322
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.83 E-value=0.058 Score=47.09 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhcc-----C---------CCCEEEEeccCchhhHHHHHHHHhccCcEEEEEcC
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAENE-----K---------LFDRVIFVEESESGRARSLCNRLKKEKMILVILDN 190 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----~---------~F~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDd 190 (532)
.....|+|+|.+|+|||||...+....... + .+...+++..............+....-+++|+|-
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 445678999999999999999987642100 0 01111244444444444455556554556677764
Q ss_pred C
Q 048213 191 I 191 (532)
Q Consensus 191 v 191 (532)
.
T Consensus 94 ~ 94 (181)
T 1fzq_A 94 A 94 (181)
T ss_dssp T
T ss_pred c
Confidence 3
No 323
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.82 E-value=0.019 Score=52.05 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...++|.|.|++|+||||.|+.+++...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999988754
No 324
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.82 E-value=0.018 Score=52.29 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
....|.|.|+.|+||||+|+.++....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999988653
No 325
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.81 E-value=0.013 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=18.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999987643
No 326
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.80 E-value=0.052 Score=53.35 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=29.5
Q ss_pred HHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 115 FNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 115 ~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..++++.+. ..+..+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444555554 45678999999999999999999877653
No 327
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.78 E-value=0.045 Score=50.12 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=36.8
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKK 180 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~ 180 (532)
....|+|.|+.|+||||+++.+...... .++...............+.+.+.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~~~p~~~~~g~~i~~~~~~ 77 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMTREPGGVPTGEEIRKIVLE 77 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEECTTTTCHHHHHHHHHTTC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceeecCCCCCchHHHHHHHHhC
Confidence 3478999999999999999999987764 3555443333333444556665553
No 328
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.77 E-value=0.018 Score=50.82 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.77 E-value=0.021 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.139 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987653
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.76 E-value=0.015 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 331
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.75 E-value=0.03 Score=52.27 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..++.+.|.||+||||++..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999877654
No 332
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.74 E-value=0.018 Score=49.61 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=21.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988643
No 333
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.70 E-value=0.03 Score=54.06 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+++|+|.+|+||||++..++....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999887554
No 334
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.70 E-value=0.018 Score=51.86 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998754
No 335
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.69 E-value=0.057 Score=52.80 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-+++.|+|.+|+||||||.+++....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999886543
No 336
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.69 E-value=0.039 Score=52.66 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+++++|++|+||||++..++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999887654
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.67 E-value=0.02 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988653
No 338
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.67 E-value=0.02 Score=55.14 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
....+|+|+|+.|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4457999999999999999999987544
No 339
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.64 E-value=0.027 Score=52.47 Aligned_cols=26 Identities=19% Similarity=0.045 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998764
No 340
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.61 E-value=0.022 Score=52.81 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHH
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
....+|+|.|+.|+|||||++.+...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34478999999999999999999875
No 341
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.61 E-value=0.035 Score=53.23 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...+++|+|++|+||||++..++....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 357999999999999999999887654
No 342
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.56 E-value=0.086 Score=44.74 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=35.9
Q ss_pred EEEEccCCCchHHHHHHHHHHhhccC----CC----------CEEEEeccCchhhHHHHHHHHhccCcEEEEEcC
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAENEK----LF----------DRVIFVEESESGRARSLCNRLKKEKMILVILDN 190 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~~~~----~F----------~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDd 190 (532)
|+++|.+|+|||||...+....-... .| ...+++..............+.+..-+++|+|-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred EEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 78999999999999999876532110 01 112244444444444444445544556666664
No 343
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.56 E-value=0.021 Score=52.18 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
No 344
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.55 E-value=0.017 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 345
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.54 E-value=0.043 Score=46.75 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.-|+++|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988653
No 346
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.54 E-value=0.066 Score=54.91 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..++|.|+|.+|+||||++..++.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999998875543
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.53 E-value=0.024 Score=51.06 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=23.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..+|+|.|+.|+||||+|+.+......
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999886543
No 348
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.51 E-value=0.038 Score=54.00 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=24.7
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
....+++.+.|.||+||||+|..++....
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 45568999999999999999999887654
No 349
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.51 E-value=0.023 Score=51.07 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..+|+|.|+.|+||||+|+.+.....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988654
No 350
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.50 E-value=0.023 Score=50.41 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHH
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
....+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999875
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.50 E-value=0.022 Score=51.83 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...|.|.|+.|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988654
No 352
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.49 E-value=0.013 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+|+|.|+.|+||||+|+.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999987654
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.48 E-value=0.024 Score=52.77 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...+|+|+|+.|+||||+++.++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999998654
No 354
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.47 E-value=0.024 Score=48.59 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344799999999999999999998864
No 355
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.47 E-value=0.018 Score=51.57 Aligned_cols=37 Identities=16% Similarity=0.024 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 115 FNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 115 ~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.+.+.+.....+.--|+|+|.+|+|||||...+.+..
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3333343334455678899999999999999888643
No 356
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.45 E-value=0.14 Score=50.19 Aligned_cols=39 Identities=18% Similarity=-0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHhc-CCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 114 TFNDILNALK-SPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 114 ~~~~i~~~l~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.--++++.+. -..-..++|+|.+|+|||+|+..+.+...
T Consensus 161 tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 161 YSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 3446677776 24457899999999999999999888643
No 357
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.43 E-value=0.055 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-.++.|.|.+|+|||++|.+++.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999887654
No 358
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.40 E-value=0.025 Score=54.26 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.1
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+++|+|++|+||||++..++.-...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999876553
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.40 E-value=0.024 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
No 360
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.39 E-value=0.03 Score=56.49 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..+|.|+|.+|+||||+|..++....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887554
No 361
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.042 Score=47.04 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|+++|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998864
No 362
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.35 E-value=0.05 Score=46.97 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..-|+|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998754
No 363
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.33 E-value=0.024 Score=51.51 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 47999999999999999999987643
No 364
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.32 E-value=0.054 Score=54.39 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=24.0
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+|.++|++|+||||++..++.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999998876554
No 365
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.28 E-value=0.026 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988753
No 366
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.27 E-value=0.043 Score=46.81 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 367
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.27 E-value=0.044 Score=53.25 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=24.7
Q ss_pred CCCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 124 SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 124 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
....+++.+.|-||+||||+|..++.....
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~ 42 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAK 42 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 455688889999999999999998876554
No 368
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.24 E-value=0.039 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 369
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.23 E-value=0.052 Score=46.14 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.5
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987653
No 370
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.23 E-value=0.085 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-+++.|.|.+|+||||||.+++....
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 371
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.23 E-value=0.013 Score=64.28 Aligned_cols=145 Identities=12% Similarity=0.137 Sum_probs=79.2
Q ss_pred ccccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEE-e-----cc
Q 048213 105 YEAFESRMSTFNDILNALKS-------------PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIF-V-----EE 165 (532)
Q Consensus 105 ~~~~~gR~~~~~~i~~~l~~-------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~-~-----~~ 165 (532)
...+.|.++.++.+.+.+.- .....+.++|++|+|||+||+.+++..... |-..-. . ..
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~--~i~v~~~~l~~~~~g 553 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMWFG 553 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC--CCCCCCSSSTTCCTT
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC--EEEEechHhhhhhcC
Confidence 44567888888887776541 134568899999999999999999876432 211100 0 01
Q ss_pred CchhhHHHHHHHHhccCcEEEEEcCCCCcc----------------cccccccccCC--CCCCeEEEEeecChHHhh-hc
Q 048213 166 SESGRARSLCNRLKKEKMILVILDNIWENL----------------DFHAVGIPHGD--DHKGCKVLLTARSLDVLS-RK 226 (532)
Q Consensus 166 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~gs~ilvTtr~~~v~~-~~ 226 (532)
........+.+........+|++|+++... ....+...+.. ...+..||.||....... ..
T Consensus 554 ~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~al 633 (806)
T 1ypw_A 554 ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI 633 (806)
T ss_dssp TSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTT
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHH
Confidence 112334455555443456799999986420 01222222211 122344566665443321 11
Q ss_pred CC---CCceEEccCCCHHHHHHHHHHHh
Q 048213 227 MD---SQQDFWVGVLKEDEAWSLFKKMA 251 (532)
Q Consensus 227 ~~---~~~~~~l~~L~~~~~~~Lf~~~~ 251 (532)
.. -...+.+...+.++-.+++..+.
T Consensus 634 lrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 634 LRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred hCccccCceeecCCCCHHHHHHHHHHHh
Confidence 11 12356666667777777776654
No 372
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.22 E-value=0.028 Score=50.15 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 373
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.21 E-value=0.027 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997754
No 374
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.20 E-value=0.045 Score=47.78 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=20.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.-|+|+|.+|+|||||...+....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999988653
No 375
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.18 E-value=0.047 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.111 Sum_probs=20.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.-|+|+|.+|+|||||...+....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 376
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.18 E-value=0.017 Score=50.20 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=22.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
++++|+|..|+|||||++.+..-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 68999999999999999999876554
No 377
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.17 E-value=0.075 Score=47.26 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
..-|+|+|.+|+|||||...+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456899999999999999998764
No 378
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.16 E-value=0.042 Score=46.98 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-|+++|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988653
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.15 E-value=0.029 Score=48.97 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998764
No 380
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.14 E-value=0.068 Score=47.40 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=21.3
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHH
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
....-|+|+|.+|+|||||...+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34467899999999999999998764
No 381
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.11 E-value=0.035 Score=58.83 Aligned_cols=48 Identities=15% Similarity=0.062 Sum_probs=39.4
Q ss_pred ccccccccchHHHHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 103 KDYEAFESRMSTFNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 103 ~~~~~~~gR~~~~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.....++|.+..++.+...+..+ ..+.|+|+.|+||||||+.++....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 33567899988888877777655 5889999999999999999988643
No 382
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.11 E-value=0.047 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.052 Sum_probs=21.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468899999999999999988764
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.09 E-value=0.034 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 384
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.05 E-value=0.032 Score=52.88 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.8
Q ss_pred CCceEEEEEccCCCchHHHHHHHHH
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999873
No 385
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.04 E-value=0.037 Score=49.87 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
....+|.|.|+.|+||||+|+.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457899999999999999999987654
No 386
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.99 E-value=0.026 Score=52.35 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=22.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+|+|+|+.|+||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999987543
No 387
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.95 E-value=0.062 Score=46.73 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..-|+|+|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3568899999999999999988653
No 388
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.95 E-value=0.044 Score=47.37 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|+|+|..|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998864
No 389
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.95 E-value=0.033 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.188 Sum_probs=21.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998764
No 390
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.94 E-value=0.13 Score=46.30 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=37.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKK 180 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~ 180 (532)
..|+|.|+.|+||||+++.+......+ .+................+++.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~~~~p~~~~~g~~i~~~l~~ 58 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTREPGGTPLAERIRELLLA 58 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEESSCSSHHHHHHHHHHHS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcccccCCCCCHHHHHHHHHHhc
Confidence 688999999999999999999876543 3555544444444455667777764
No 391
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.94 E-value=0.031 Score=49.46 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988665
No 392
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.94 E-value=0.062 Score=51.99 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
....+++|+|+.|+||||++..++.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34689999999999999999998876543
No 393
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.93 E-value=0.03 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.127 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
-.+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 37899999999999999999874
No 394
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.92 E-value=0.031 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-.+++|+|+.|+|||||++.++...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999998743
No 395
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.91 E-value=0.041 Score=50.79 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=20.8
Q ss_pred EEEEccCCCchHHHHHHHHHHhhcc
Q 048213 130 LGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 130 v~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
|+|.|-||+||||+|..++.....+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~ 27 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD 27 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC
Confidence 6669999999999999988766543
No 396
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.91 E-value=0.047 Score=48.59 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=27.3
Q ss_pred HHHHHHHhcC-CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 115 FNDILNALKS-PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 115 ~~~i~~~l~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+..+..++.. ..-..+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444444432 1234799999999999999999988754
No 397
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.90 E-value=0.077 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=19.0
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.+..|.|.+|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999876444
No 398
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.90 E-value=0.12 Score=46.25 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=37.7
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCCCEEEEeccCchhhHHHHHHHHhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVIFVEESESGRARSLCNRLKK 180 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~ 180 (532)
..|+|-|..|+||||+++.+++... ..++.............+.+++.+.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v~~~~eP~~t~~g~~ir~~l~~ 53 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV--KDYDVIMTREPGGVPTGEEIRKIVLE 53 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT--TTSCEEEEESSTTCHHHHHHHHHHHS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeeCCCCChHHHHHHHHHhc
Confidence 4688999999999999999998774 24666654444555566777777764
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.89 E-value=0.039 Score=48.05 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.++++|+|+.|+|||||+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999987643
No 400
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.07 Score=47.07 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356899999999999999998864
No 401
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.88 E-value=0.051 Score=46.41 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998864
No 402
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.88 E-value=0.036 Score=53.26 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
....+|+|.|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445799999999999999999998754
No 403
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.87 E-value=0.063 Score=47.69 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..-|+|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568999999999999999987653
No 404
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.87 E-value=0.034 Score=51.30 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.. .+++|+|+.|+|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 799999999999999999998643
No 405
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.83 E-value=0.12 Score=50.92 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
-.++.|.|.+|+||||||..++....
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 36889999999999999999877643
No 406
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.82 E-value=0.022 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=16.5
Q ss_pred ceEEEEEccCCCchHHHHHHHH-HH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVA-IK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~-~~ 150 (532)
..+++|+|+.|+|||||++.+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998 54
No 407
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.80 E-value=0.038 Score=50.58 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999987653
No 408
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.80 E-value=0.11 Score=45.48 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCchHHHHHHHHHH
Q 048213 115 FNDILNALKSPDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 115 ~~~i~~~l~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
...+.+ +.......|+|+|.+|+|||||...+...
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 44455678899999999999999998854
No 409
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.79 E-value=0.039 Score=48.42 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-.|+++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998653
No 410
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.78 E-value=0.11 Score=49.64 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=20.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
++-|.|++|+||||||.+++....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999988876654
No 411
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.78 E-value=0.059 Score=51.38 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+++|+|.+|+||||++..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999998876543
No 412
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.77 E-value=0.044 Score=48.31 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..-|+|+|..|+|||||...+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998754
No 413
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.76 E-value=0.039 Score=50.00 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=22.0
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
..|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988653
No 414
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.75 E-value=0.055 Score=48.26 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEE-ccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIY-GMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~-G~gGiGKTtLA~~v~~~~~~ 153 (532)
++|+|+ +-||+||||+|..++.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~ 28 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR 28 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 578887 78999999999998776543
No 415
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.75 E-value=0.04 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+|.|.|++|+||+|.|+.++....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 678999999999999999998754
No 416
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.73 E-value=0.037 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987543
No 417
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.73 E-value=0.051 Score=46.46 Aligned_cols=24 Identities=13% Similarity=0.118 Sum_probs=20.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999988754
No 418
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.73 E-value=0.044 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.--|+|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356789999999999999999865
No 419
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.72 E-value=0.031 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=21.1
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999865
No 420
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.71 E-value=0.052 Score=47.08 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-|+|+|.+|+|||||...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998865
No 421
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.69 E-value=0.045 Score=47.79 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998654
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.69 E-value=0.04 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 423
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.69 E-value=0.035 Score=47.40 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|+|+|.+|+|||||...+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999875
No 424
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.68 E-value=0.069 Score=45.47 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.7
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~ 149 (532)
-|+++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999998854
No 425
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.67 E-value=0.07 Score=46.79 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
..-|+|+|..|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999998764
No 426
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.66 E-value=0.046 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.047 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988754
No 427
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.65 E-value=0.045 Score=52.35 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..+++|+|+.|+||||++..++.....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999876543
No 428
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.63 E-value=0.042 Score=50.05 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998764
No 429
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.62 E-value=0.031 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-.+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999998764
No 430
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.61 E-value=0.072 Score=46.81 Aligned_cols=23 Identities=35% Similarity=0.190 Sum_probs=19.3
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|+|+|.+|+|||||.+.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 45889999999999999776653
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.60 E-value=0.042 Score=52.84 Aligned_cols=24 Identities=21% Similarity=0.052 Sum_probs=21.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
++|.|+|+.|+||||||..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998764
No 432
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.59 E-value=0.092 Score=45.92 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.5
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-|+|+|.+|+|||||...+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999864
No 433
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.59 E-value=0.05 Score=46.97 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-|+|+|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 434
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.59 E-value=0.026 Score=53.73 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=19.7
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
+..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999988753
No 435
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.58 E-value=0.032 Score=50.92 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998754
No 436
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.57 E-value=0.044 Score=55.15 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=36.2
Q ss_pred cccccchHHHHHHHHHhcC--------------CCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 106 EAFESRMSTFNDILNALKS--------------PDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 106 ~~~~gR~~~~~~i~~~l~~--------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..++|-++.++.+...+.. ...+-+.++|++|+||||+|+.++.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3577888877777665521 13467899999999999999999987643
No 437
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.52 E-value=0.064 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-|.|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3779999999999999988754
No 438
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.50 E-value=0.12 Score=46.17 Aligned_cols=25 Identities=12% Similarity=-0.033 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999988653
No 439
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.48 E-value=0.074 Score=48.15 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 129 MLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 129 vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
.|.+.|.||+||||+|..++.....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47889999999999999888765543
No 440
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.053 Score=47.82 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=21.0
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
--|+|+|..|+|||||...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 441
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.48 E-value=0.073 Score=46.79 Aligned_cols=26 Identities=19% Similarity=-0.112 Sum_probs=21.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.++.|+|+.|+||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999777765543
No 442
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.47 E-value=0.062 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=20.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.-|+|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999987653
No 443
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.044 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.8
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
--|+++|.+|+|||||...+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999987654
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.43 E-value=0.044 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.5
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
++|+|.|+.|+||||||..++...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 689999999999999999998753
No 445
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.38 E-value=0.059 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=19.6
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-|+|+|..|+|||||...+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998754
No 446
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.34 E-value=0.14 Score=48.16 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=23.3
Q ss_pred CCCceEEEEEcc-CCCchHHHHHHHHHHhh
Q 048213 124 SPDVNMLGIYGM-GGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 124 ~~~~~vv~I~G~-gGiGKTtLA~~v~~~~~ 152 (532)
+.+.++|.|.|. ||+||||+|..++....
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA 108 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAYA 108 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 456789999975 89999999998876544
No 447
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.34 E-value=0.059 Score=48.09 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
..-|+|+|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356889999999999999998764
No 448
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.31 E-value=0.044 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCchHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
-.++.|+|++|+||||||..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999887
No 449
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.30 E-value=0.037 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-.+++|+|+.|+|||||++.+..-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998764
No 450
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.29 E-value=0.17 Score=45.49 Aligned_cols=51 Identities=27% Similarity=0.212 Sum_probs=36.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhhccCCC-CEEEEeccCchhhHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAENEKLF-DRVIFVEESESGRARSLCNRLK 179 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~~~~~~~~~~~~~l~~~l~ 179 (532)
..|.+.|+.|+||||+++.+.......+ + ................+++.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999998776543 4 3333333344445666777766
No 451
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.28 E-value=0.038 Score=50.85 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-.+++|+|+.|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998764
No 452
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.25 E-value=0.05 Score=47.05 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
..-|+|+|..|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998875
No 453
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.24 E-value=0.11 Score=47.21 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=34.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhcc---CCCCEEEEeccCchhhHHHHHHHHhc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAENE---KLFDRVIFVEESESGRARSLCNRLKK 180 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~~~~~~~~~~~~~l~~~l~~ 180 (532)
...|.|.|+.|+||||+++.+++..... ..++...............+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~ 81 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLN 81 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHc
Confidence 3689999999999999999999876543 03555444444444445667766664
No 454
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.23 E-value=0.078 Score=52.43 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCceEEEEEc-cCCCchHHHHHHHHHHhh
Q 048213 125 PDVNMLGIYG-MGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 125 ~~~~vv~I~G-~gGiGKTtLA~~v~~~~~ 152 (532)
.+.++|+|+| -||+||||+|..++....
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La 169 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA 169 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHH
Confidence 3578899985 999999999998876543
No 455
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.22 E-value=0.077 Score=47.01 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=20.9
Q ss_pred cccccEEEeccc-cccC------cccccccccccEEeecccccccc
Q 048213 391 LTNLQTLCLYYC-KLQD------TSVLGELKILEILRLRVNELTRA 429 (532)
Q Consensus 391 l~~L~~L~l~~~-~l~~------~~~i~~l~~L~~L~l~~~~l~~~ 429 (532)
-+.|+.|+++++ .+.+ ...+..-..|+.|+|++|.+...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ 85 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS 85 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChH
Confidence 345667777664 5443 12334445566666666655543
No 456
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.21 E-value=0.044 Score=52.89 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998753
No 457
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.20 E-value=0.11 Score=51.92 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=27.0
Q ss_pred HHHHHhc-CCCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 117 DILNALK-SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 117 ~i~~~l~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
+.++.|. =..-..++|+|..|+|||+|+..+++....
T Consensus 140 raID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 140 SAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp HHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred eEEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 3445444 123356789999999999999999987654
No 458
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.20 E-value=0.039 Score=51.64 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCchHHHHHHHHHH
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998764
No 459
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.19 E-value=0.054 Score=51.54 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.++|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998763
No 460
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.095 Score=46.27 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=21.6
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHH
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
...--|+|+|.+|+|||||...+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34456889999999999999998875
No 461
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.18 E-value=0.047 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=21.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 462
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.15 E-value=0.043 Score=46.95 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999998764
No 463
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.14 E-value=0.061 Score=47.24 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998753
No 464
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.13 E-value=0.041 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-.+++|+|+.|+|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3689999999999999999997643
No 465
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.10 E-value=0.11 Score=52.16 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=26.7
Q ss_pred HHHHhc-CCCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 118 ILNALK-SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 118 i~~~l~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
.++.|. =..-..++|+|.+|+|||+|+..+++....
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 344444 223357789999999999999999887654
No 466
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.08 E-value=0.053 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 467
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.07 E-value=0.042 Score=50.66 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-.+++|+|+.|+|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998764
No 468
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.06 E-value=0.038 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 469
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.06 E-value=0.05 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCchHHHHHHHHHH
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 470
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.06 E-value=0.063 Score=52.57 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..+++|+|+.|+||||++..++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 469999999999999999999876543
No 471
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.03 E-value=0.12 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.079 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchHHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
--|+|+|..|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999998764
No 472
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.02 E-value=0.1 Score=53.08 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
...+++|+|..|+|||||++.++.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3579999999999999999999876543
No 473
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.01 E-value=0.043 Score=51.18 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987643
No 474
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.01 E-value=0.17 Score=48.23 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=23.6
Q ss_pred CCCceEEEEEcc-CCCchHHHHHHHHHHhh
Q 048213 124 SPDVNMLGIYGM-GGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 124 ~~~~~vv~I~G~-gGiGKTtLA~~v~~~~~ 152 (532)
+.+.++|.|.|. ||+||||+|..++....
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA 130 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIA 130 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHH
Confidence 456789999986 89999999998876544
No 475
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.00 E-value=0.045 Score=50.10 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987643
No 476
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.00 E-value=0.053 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.9
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.+++|+|++|+|||||+..++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999986543
No 477
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.00 E-value=0.044 Score=51.26 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHH
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3478999999999999999998764
No 478
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.97 E-value=0.061 Score=47.36 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.--|+|+|..|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988753
No 479
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.97 E-value=0.08 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=19.1
Q ss_pred eEEEEEccCCCchHHHHHHHHH
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999863
No 480
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.96 E-value=0.047 Score=50.47 Aligned_cols=26 Identities=15% Similarity=0.025 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999987643
No 481
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.94 E-value=0.12 Score=45.64 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.--|+|+|..|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999875
No 482
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.92 E-value=0.1 Score=51.08 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
....++...|-||+||||+|..++....
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3345666779999999999998876654
No 483
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.91 E-value=0.046 Score=50.64 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.4
Q ss_pred eEEEEEccCCCchHHHHHHHHHHh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.+++|+|+.|+|||||.+.++.-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999987643
No 484
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.91 E-value=0.056 Score=51.64 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344799999999999999999998754
No 485
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.90 E-value=0.06 Score=47.51 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHh
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
...|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998753
No 486
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.89 E-value=0.11 Score=49.55 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
..+++++|.+|+||||++..++.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999998876543
No 487
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.89 E-value=0.15 Score=46.18 Aligned_cols=56 Identities=23% Similarity=0.157 Sum_probs=38.1
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-EeccCchhhHHHHHHHHhc
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-FVEESESGRARSLCNRLKK 180 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-~~~~~~~~~~~~l~~~l~~ 180 (532)
.....|.|.|+.|+||||+++.+.+.......++... ..........+.+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~ 75 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFK 75 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhC
Confidence 4457899999999999999999998765412245544 3333334445667777763
No 488
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.86 E-value=0.1 Score=53.60 Aligned_cols=46 Identities=2% Similarity=-0.175 Sum_probs=34.6
Q ss_pred cccchHHHHHHHHHhc--CCCceEEEEEccCCCchHHHHHHHHHHhhc
Q 048213 108 FESRMSTFNDILNALK--SPDVNMLGIYGMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 108 ~~gR~~~~~~i~~~l~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 153 (532)
-..|.+..+.+.+... .....+|.+.|+.|+||||+|+.++.....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3456666666666552 335578999999999999999999998764
No 489
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.84 E-value=0.062 Score=50.23 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=50.7
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHhhccCCCCEEE-----------------Eec----cCchhhHHHHHHHHhccCc
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKAENEKLFDRVI-----------------FVE----ESESGRARSLCNRLKKEKM 183 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-----------------~~~----~~~~~~~~~l~~~l~~~k~ 183 (532)
..-.+++|+|+.|+|||||++.+..-.... +...+ ... .........+...|.. ..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~-~p 99 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE-DP 99 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHH-CC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhh-CC
Confidence 344799999999999999999987643321 01111 000 0111234455566654 44
Q ss_pred EEEEEcCCCCcccccccccccCCCCCCeEEEEeecChHH
Q 048213 184 ILVILDNIWENLDFHAVGIPHGDDHKGCKVLLTARSLDV 222 (532)
Q Consensus 184 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~v 222 (532)
=+|++|...+.+....+... ...|..|++||.....
T Consensus 100 ~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 100 DVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp SEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred CEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 56777887644332222111 1235567777776543
No 490
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.83 E-value=0.057 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-+.|.|.|+.|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999998764
No 491
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.83 E-value=0.048 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCchHHHHHHHHHH
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3368999999999999999998764
No 492
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.80 E-value=0.072 Score=47.00 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=22.1
Q ss_pred cCCCceEEEEEccCCCchHHHHHHHHH
Q 048213 123 KSPDVNMLGIYGMGGIRKTTPAKEVAI 149 (532)
Q Consensus 123 ~~~~~~vv~I~G~gGiGKTtLA~~v~~ 149 (532)
......-|+|+|.+|+|||||...+..
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 344456789999999999999999864
No 493
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.79 E-value=0.098 Score=50.62 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=20.6
Q ss_pred eEEEEEccCCCchHHHHHHHHHHhh
Q 048213 128 NMLGIYGMGGIRKTTPAKEVAIKAE 152 (532)
Q Consensus 128 ~vv~I~G~gGiGKTtLA~~v~~~~~ 152 (532)
.++...|.||+||||+|..++....
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA 39 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMA 39 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHH
Confidence 5667779999999999998876544
No 494
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.77 E-value=0.075 Score=49.47 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=22.7
Q ss_pred CCceEEEEE-ccCCCchHHHHHHHHHHhhc
Q 048213 125 PDVNMLGIY-GMGGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 125 ~~~~vv~I~-G~gGiGKTtLA~~v~~~~~~ 153 (532)
...++|+|+ +-||+||||+|..++.....
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~ 33 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLAR 33 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHH
Confidence 345788887 68899999999998876543
No 495
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.77 E-value=0.056 Score=54.33 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCchHHHHHHHHHHh
Q 048213 125 PDVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 125 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
....+|.|+|++|+||||+|+.++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999988754
No 496
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.77 E-value=0.05 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-.+++|+|+.|+|||||.+.++.-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999764
No 497
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.76 E-value=0.058 Score=49.48 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCchHHHHHHHHHH
Q 048213 127 VNMLGIYGMGGIRKTTPAKEVAIK 150 (532)
Q Consensus 127 ~~vv~I~G~gGiGKTtLA~~v~~~ 150 (532)
-.++.|+|++|+|||||+..++..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 368999999999999999999875
No 498
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.72 E-value=0.11 Score=47.02 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=20.6
Q ss_pred eEEEEEcc-CCCchHHHHHHHHHHhhc
Q 048213 128 NMLGIYGM-GGIRKTTPAKEVAIKAEN 153 (532)
Q Consensus 128 ~vv~I~G~-gGiGKTtLA~~v~~~~~~ 153 (532)
++|.|.|. ||+||||+|..++.....
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~ 28 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKA 28 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57788875 899999999998776543
No 499
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.71 E-value=0.081 Score=53.31 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=24.7
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHhhcc
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKAENE 154 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 154 (532)
..++|.++|.+|+||||++..++.....+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999988766544
No 500
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.71 E-value=0.051 Score=51.14 Aligned_cols=26 Identities=19% Similarity=0.089 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCchHHHHHHHHHHh
Q 048213 126 DVNMLGIYGMGGIRKTTPAKEVAIKA 151 (532)
Q Consensus 126 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 151 (532)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997643
Done!