BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048215
         (305 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
          Length = 176

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 16/169 (9%)

Query: 1   SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDD-QLNRGYEISESLXXXXX 59
           S  +  KYDVF+SFRG DT  +F S LY  L R++I+TF DD +L  G   S  L     
Sbjct: 2   SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61

Query: 60  XXXXXXXXFSEDYASSRWCLDELAEILECKKEHAQI-----------YVRNQTGSFGDSF 108
                    SE+YA+S WCLDEL  I++ +K+ +             +VR QTG   + F
Sbjct: 62  VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF 121

Query: 109 SKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNI 157
            K   R  ++ EK+  WR+ L   A LSG    S   +S+L++++ N I
Sbjct: 122 KKHASR--EDPEKVLKWRQALTNFAQLSG--DCSGDDDSKLVDKIANEI 166


>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
 pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
          Length = 204

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 15/171 (8%)

Query: 7   KYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTF-IDDQLNRGYEISESLXXXXXXXXXXX 65
           +Y+VF+SFRG DT + FT  LY +L R  I TF  DD+L +G EI  +L           
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94

Query: 66  XXFSEDYASSRWCLDELAEILECKKEHAQ-----IY-------VRNQTGSFGDSFSKLEE 113
              S  YA S+WCL ELAEI+  ++E  +     I+       VR+QTG +  +F K   
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154

Query: 114 RFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEE 164
           +F+   + +Q W+  L++V  L G+H      +  + ++V  +I   + +E
Sbjct: 155 KFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISKE 203


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,989,593
Number of Sequences: 62578
Number of extensions: 283089
Number of successful extensions: 839
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 2
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)