Query 048215
Match_columns 305
No_of_seqs 246 out of 2298
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1.2E-49 4.1E-54 330.5 6.6 162 1-166 2-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.1E-47 3.8E-52 323.7 9.3 159 3-163 31-202 (204)
3 3h16_A TIR protein; bacteria T 99.9 1.4E-26 4.8E-31 189.8 -0.2 104 5-109 18-133 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.8 5.6E-23 1.9E-27 166.5 -2.7 85 3-89 6-93 (146)
5 1fyx_A TOLL-like receptor 2; b 99.8 1.2E-20 4E-25 153.5 1.6 83 4-88 2-88 (149)
6 2js7_A Myeloid differentiation 99.8 4.1E-20 1.4E-24 151.9 4.1 85 3-89 12-100 (160)
7 1t3g_A X-linked interleukin-1 99.8 7.4E-20 2.5E-24 150.3 4.9 84 6-89 1-97 (159)
8 2j67_A TOLL like receptor 10; 99.8 5E-20 1.7E-24 153.9 2.3 85 3-89 31-119 (178)
9 2a5y_B CED-4; apoptosis; HET: 99.6 1.3E-16 4.4E-21 155.7 6.9 115 176-296 131-311 (549)
10 3sfz_A APAF-1, apoptotic pepti 99.4 1.4E-13 4.8E-18 144.8 10.1 118 170-294 121-302 (1249)
11 1vt4_I APAF-1 related killer D 99.3 7.4E-13 2.5E-17 135.1 7.2 65 221-293 242-312 (1221)
12 3j0a_A TOLL-like receptor 5; m 99.3 7.6E-13 2.6E-17 135.1 7.0 84 4-89 667-757 (844)
13 1z6t_A APAF-1, apoptotic prote 99.2 1.9E-11 6.6E-16 119.7 8.3 116 170-293 121-301 (591)
14 1eiw_A Hypothetical protein MT 97.4 6.6E-05 2.3E-09 57.0 2.4 64 5-87 2-65 (111)
15 1w5s_A Origin recognition comp 97.2 0.00036 1.2E-08 64.4 5.9 69 222-290 137-227 (412)
16 1njg_A DNA polymerase III subu 97.0 0.0032 1.1E-07 52.7 9.2 122 172-293 22-200 (250)
17 2chg_A Replication factor C sm 96.9 0.0037 1.3E-07 51.7 9.0 121 172-292 16-175 (226)
18 2qen_A Walker-type ATPase; unk 96.7 0.0022 7.6E-08 57.4 6.0 67 223-290 128-215 (350)
19 2v1u_A Cell division control p 96.7 0.0045 1.6E-07 56.1 8.2 120 170-290 16-213 (387)
20 2qby_A CDC6 homolog 1, cell di 96.5 0.0034 1.2E-07 56.9 6.3 122 170-291 17-210 (386)
21 2fna_A Conserved hypothetical 96.5 0.0022 7.6E-08 57.5 4.7 67 223-290 137-221 (357)
22 2qby_B CDC6 homolog 3, cell di 96.3 0.0079 2.7E-07 54.7 7.5 72 217-291 127-210 (384)
23 1sxj_B Activator 1 37 kDa subu 95.8 0.016 5.5E-07 51.2 6.7 121 172-292 20-180 (323)
24 1iqp_A RFCS; clamp loader, ext 95.2 0.074 2.5E-06 46.9 8.9 119 172-293 24-184 (327)
25 1fnn_A CDC6P, cell division co 95.1 0.068 2.3E-06 48.3 8.6 70 222-291 124-206 (389)
26 3h4m_A Proteasome-activating n 94.8 0.075 2.6E-06 46.1 7.7 126 170-295 14-205 (285)
27 3hyn_A Putative signal transdu 93.9 0.087 3E-06 43.0 5.4 80 7-88 5-108 (189)
28 2chq_A Replication factor C sm 93.2 0.65 2.2E-05 40.5 10.6 121 172-292 16-175 (319)
29 2qz4_A Paraplegin; AAA+, SPG7, 92.5 0.73 2.5E-05 39.0 9.7 71 222-292 97-191 (262)
30 1jbk_A CLPB protein; beta barr 91.9 0.1 3.4E-06 41.6 3.3 31 172-202 21-53 (195)
31 1jr3_A DNA polymerase III subu 91.9 1.3 4.4E-05 39.6 11.0 70 222-291 118-191 (373)
32 3d8b_A Fidgetin-like protein 1 91.7 0.64 2.2E-05 42.0 8.7 140 146-291 63-264 (357)
33 1hqc_A RUVB; extended AAA-ATPa 90.8 1.1 3.7E-05 39.3 9.2 123 171-293 10-183 (324)
34 3bos_A Putative DNA replicatio 89.4 0.45 1.5E-05 39.5 5.2 71 222-292 103-188 (242)
35 2qp9_X Vacuolar protein sortin 86.5 5.3 0.00018 35.8 10.8 121 171-293 49-232 (355)
36 3vfd_A Spastin; ATPase, microt 86.3 2.3 7.9E-05 38.6 8.3 121 172-292 114-296 (389)
37 3eie_A Vacuolar protein sortin 85.4 3 0.0001 36.8 8.4 122 171-294 16-200 (322)
38 2zan_A Vacuolar protein sortin 85.2 5.6 0.00019 36.9 10.5 122 171-292 132-315 (444)
39 1sxj_A Activator 1 95 kDa subu 83.3 3.6 0.00012 39.0 8.4 70 222-293 147-224 (516)
40 1sxj_D Activator 1 41 kDa subu 82.8 11 0.00039 32.9 11.2 118 172-292 36-206 (353)
41 3u61_B DNA polymerase accessor 82.5 3.2 0.00011 36.3 7.3 109 172-283 25-170 (324)
42 3cf0_A Transitional endoplasmi 80.8 5.8 0.0002 34.5 8.3 121 171-291 13-199 (301)
43 2r62_A Cell division protease 79.9 5.9 0.0002 33.5 7.9 122 170-291 8-196 (268)
44 3b9p_A CG5977-PA, isoform A; A 79.6 10 0.00035 32.5 9.5 118 171-291 19-202 (297)
45 1xwi_A SKD1 protein; VPS4B, AA 78.5 11 0.00036 33.3 9.3 68 222-291 104-192 (322)
46 3pfi_A Holliday junction ATP-d 78.3 13 0.00044 32.5 9.8 117 173-291 29-197 (338)
47 2z4s_A Chromosomal replication 75.7 2.2 7.6E-05 39.6 4.1 73 220-292 191-277 (440)
48 3pvs_A Replication-associated 74.8 4.6 0.00016 37.6 6.1 117 172-292 25-179 (447)
49 1sxj_E Activator 1 40 kDa subu 74.5 6.3 0.00022 34.8 6.7 70 222-291 133-206 (354)
50 1d2n_A N-ethylmaleimide-sensit 73.7 5.6 0.00019 33.8 6.0 69 221-289 122-210 (272)
51 1r6b_X CLPA protein; AAA+, N-t 72.5 20 0.0007 35.4 10.5 117 172-290 185-361 (758)
52 1qvr_A CLPB protein; coiled co 72.0 7 0.00024 39.5 7.0 31 172-202 169-201 (854)
53 3syl_A Protein CBBX; photosynt 69.2 6.1 0.00021 34.1 5.2 68 223-292 130-218 (309)
54 3hu3_A Transitional endoplasmi 69.0 10 0.00034 35.8 7.0 121 172-292 203-386 (489)
55 1a5t_A Delta prime, HOLB; zinc 67.4 15 0.00053 32.3 7.6 71 221-291 106-180 (334)
56 2gno_A DNA polymerase III, gam 64.1 6.2 0.00021 34.7 4.2 69 222-291 81-152 (305)
57 3pxg_A Negative regulator of g 59.2 53 0.0018 30.4 9.9 113 172-291 179-338 (468)
58 3pxi_A Negative regulator of g 59.0 45 0.0015 32.9 9.9 112 172-290 179-337 (758)
59 1lv7_A FTSH; alpha/beta domain 55.4 38 0.0013 28.1 7.6 42 250-291 149-195 (257)
60 2ce7_A Cell division protein F 53.9 31 0.0011 32.3 7.3 73 219-291 104-199 (476)
61 1l8q_A Chromosomal replication 50.7 11 0.00039 32.8 3.6 68 224-292 99-180 (324)
62 2f62_A Nucleoside 2-deoxyribos 50.2 36 0.0012 26.8 6.2 66 22-88 27-97 (161)
63 3pxi_A Negative regulator of g 50.2 34 0.0012 33.8 7.3 65 224-290 580-674 (758)
64 2yvq_A Carbamoyl-phosphate syn 46.7 22 0.00075 27.3 4.3 61 10-72 27-106 (143)
65 1v95_A Nuclear receptor coacti 45.8 69 0.0024 24.3 6.8 66 1-69 2-68 (130)
66 1jr3_D DNA polymerase III, del 45.6 63 0.0021 28.1 7.7 71 220-290 73-154 (343)
67 1ofh_A ATP-dependent HSL prote 44.7 36 0.0012 28.9 5.9 19 271-289 195-213 (310)
68 2khz_A C-MYC-responsive protei 42.9 71 0.0024 25.0 6.9 80 3-88 7-102 (165)
69 4aby_A DNA repair protein RECN 36.4 25 0.00086 31.7 3.6 49 225-275 317-368 (415)
70 4fyk_A Deoxyribonucleoside 5'- 36.2 84 0.0029 24.5 6.1 76 9-88 4-93 (152)
71 1g5t_A COB(I)alamin adenosyltr 35.5 13 0.00045 30.5 1.4 49 213-261 109-163 (196)
72 2d00_A V-type ATP synthase sub 31.5 63 0.0022 23.5 4.5 44 28-74 15-58 (109)
73 2dhr_A FTSH; AAA+ protein, hex 31.5 2.4E+02 0.0083 26.3 9.6 68 224-291 124-214 (499)
74 3uk6_A RUVB-like 2; hexameric 31.4 1E+02 0.0035 26.8 6.8 65 224-292 190-273 (368)
75 1sxj_C Activator 1 40 kDa subu 30.1 96 0.0033 26.9 6.3 69 223-291 110-182 (340)
76 2p65_A Hypothetical protein PF 27.8 27 0.00094 26.8 2.1 31 172-202 21-53 (187)
77 3ff1_A Glucose-6-phosphate iso 26.4 75 0.0026 29.5 5.0 19 187-205 70-89 (446)
78 1ye8_A Protein THEP1, hypothet 25.6 1.3E+02 0.0044 23.5 5.8 64 220-285 96-170 (178)
79 4b4t_J 26S protease regulatory 25.2 3.1E+02 0.011 24.8 8.9 121 171-291 146-332 (405)
80 1sc3_B Interleukin-1 beta conv 25.0 17 0.00058 25.5 0.3 26 11-36 21-46 (88)
81 3hjn_A DTMP kinase, thymidylat 24.6 62 0.0021 26.0 3.7 49 10-59 1-51 (197)
82 3ec2_A DNA replication protein 23.6 30 0.001 26.9 1.6 39 223-261 100-143 (180)
83 2bjv_A PSP operon transcriptio 23.6 1E+02 0.0035 25.5 5.1 62 224-286 101-189 (265)
84 2pp6_A Gifsy-2 prophage ATP-bi 23.5 25 0.00084 25.5 0.8 23 52-74 42-64 (102)
85 1b0z_A Protein (phosphoglucose 22.7 1.1E+02 0.0037 28.3 5.3 64 192-260 71-140 (445)
86 2jug_A TUBC protein; docking d 22.5 49 0.0017 22.3 2.3 38 24-61 7-48 (78)
87 4b4t_L 26S protease subunit RP 22.2 2E+02 0.0067 26.5 7.0 122 171-292 179-366 (437)
88 3ehd_A Uncharacterized conserv 21.9 1.2E+02 0.0042 23.8 4.8 68 21-89 19-97 (162)
89 3ro3_B Minsc, peptide of prote 21.6 58 0.002 16.3 1.7 13 119-131 7-19 (22)
90 2ql9_B Caspase-7; cysteine pro 20.8 21 0.0007 25.5 -0.0 25 11-35 23-47 (97)
91 3aon_B V-type sodium ATPase su 20.5 45 0.0015 24.7 1.8 67 29-104 15-83 (115)
92 4b4t_M 26S protease regulatory 20.4 54 0.0019 30.3 2.8 122 170-291 178-365 (434)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-49 Score=330.49 Aligned_cols=162 Identities=40% Similarity=0.651 Sum_probs=131.7
Q ss_pred CCCCCCcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhH
Q 048215 1 SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCL 79 (305)
Q Consensus 1 s~s~~~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl 79 (305)
|+|.+++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|||||+||++|+|||
T Consensus 2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl 81 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL 81 (176)
T ss_dssp -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence 688999999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccceE-----------EEEeCCCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccCCCCchhh
Q 048215 80 DELAEILECKKEHAQI-----------YVRNQTGSFGDSFSKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESE 148 (305)
Q Consensus 80 ~EL~~i~e~~~~~~~v-----------~Vr~q~g~f~~af~~~~~~~~~~~ekv~~Wr~aL~ev~~~~G~~~~~~~~e~~ 148 (305)
+||++|++|++..+++ +||+|+|+||++|.+|+++ ..++++++|+.||+++++++||++. .+|++
T Consensus 82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~ 157 (176)
T 3jrn_A 82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSK 157 (176)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHH
T ss_pred HHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHH
Confidence 9999999999876664 8999999999999999887 4567899999999999999999983 45999
Q ss_pred hhhhhhhhhhhhcccccc
Q 048215 149 LINEVVNNILKRLLEEVF 166 (305)
Q Consensus 149 ~I~~Iv~~v~~~l~~~~~ 166 (305)
+|++||++|+++|+++++
T Consensus 158 ~i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 158 LVDKIANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 999999999999987764
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.1e-47 Score=323.69 Aligned_cols=159 Identities=39% Similarity=0.700 Sum_probs=146.6
Q ss_pred CCCCcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhHHH
Q 048215 3 SSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDE 81 (305)
Q Consensus 3 s~~~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~E 81 (305)
++.++|||||||||+|+|++|++||+.+|.++||++|+|+ ++++|+.|.++|.+||++|+++|||||+||++|+|||+|
T Consensus 31 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E 110 (204)
T 3ozi_A 31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110 (204)
T ss_dssp ---CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred CCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHH
Confidence 4568999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-cceE-----------EEEeCCCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccCCCCchhhh
Q 048215 82 LAEILECKKE-HAQI-----------YVRNQTGSFGDSFSKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESEL 149 (305)
Q Consensus 82 L~~i~e~~~~-~~~v-----------~Vr~q~g~f~~af~~~~~~~~~~~ekv~~Wr~aL~ev~~~~G~~~~~~~~e~~~ 149 (305)
|++|++|+++ .+++ +||+|+|+||++|.+|++++. .+++++|+.||+++++++||++.....|+++
T Consensus 111 L~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~ 188 (204)
T 3ozi_A 111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGAI 188 (204)
T ss_dssp HHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCHHHH
T ss_pred HHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCHHHH
Confidence 9999999864 3443 899999999999999998874 3679999999999999999999998889999
Q ss_pred hhhhhhhhhhhccc
Q 048215 150 INEVVNNILKRLLE 163 (305)
Q Consensus 150 I~~Iv~~v~~~l~~ 163 (305)
|++|+++|+++|+.
T Consensus 189 i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 189 ADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999865
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.91 E-value=1.4e-26 Score=189.78 Aligned_cols=104 Identities=22% Similarity=0.395 Sum_probs=95.3
Q ss_pred CCcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhHHHHH
Q 048215 5 TKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELA 83 (305)
Q Consensus 5 ~~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~EL~ 83 (305)
.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.+.++|.+||++|+++|+|+|++|+.|.||++||.
T Consensus 18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~ 96 (154)
T 3h16_A 18 APPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD 96 (154)
T ss_dssp CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred CCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence 47899999999999 66899999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHhhccce-E----------EEEeCCCCchHHHH
Q 048215 84 EILECKKEHAQ-I----------YVRNQTGSFGDSFS 109 (305)
Q Consensus 84 ~i~e~~~~~~~-v----------~Vr~q~g~f~~af~ 109 (305)
.+++|.+..++ + +|++|.|.|+++|.
T Consensus 97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~ 133 (154)
T 3h16_A 97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLA 133 (154)
T ss_dssp HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCC
T ss_pred HHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHh
Confidence 99998755443 2 77889999988774
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.84 E-value=5.6e-23 Score=166.50 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=65.3
Q ss_pred CCCCcccEEecCCcCcCCcchHHHHHHHHhc--CCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhH
Q 048215 3 SSTKKYDVFVSFRGEDTLDDFTSHLYSALSR--QNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCL 79 (305)
Q Consensus 3 s~~~~~dVFis~~~~D~~~~f~~~L~~~L~~--~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl 79 (305)
...+.|||||||+++|+ .|+.+|+.+|++ .|+++|+|+ ++.+|+.+.++|.+||++|+..|+|||+||+.|.||+
T Consensus 6 r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~ 83 (146)
T 3ub2_A 6 RWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCK 83 (146)
T ss_dssp TTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHH
T ss_pred CCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHH
Confidence 34568999999999995 479999999998 599999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 048215 80 DELAEILECK 89 (305)
Q Consensus 80 ~EL~~i~e~~ 89 (305)
.||..++.+.
T Consensus 84 ~El~~al~~~ 93 (146)
T 3ub2_A 84 YQMLQALTEA 93 (146)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.79 E-value=1.2e-20 Score=153.51 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=77.7
Q ss_pred CCCcccEEecCCcCcCCcchHHH-HHHHHhcC--CceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhH
Q 048215 4 STKKYDVFVSFRGEDTLDDFTSH-LYSALSRQ--NIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCL 79 (305)
Q Consensus 4 ~~~~~dVFis~~~~D~~~~f~~~-L~~~L~~~--gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl 79 (305)
..+.|||||||+++|+ .|+.+ |+.+|+++ |+++|+|+ ++.+|+.+.++|.+||++|+..|+|||++|+.|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999995 79997 99999986 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 048215 80 DELAEILEC 88 (305)
Q Consensus 80 ~EL~~i~e~ 88 (305)
.||..++.+
T Consensus 80 ~El~~a~~~ 88 (149)
T 1fyx_A 80 YELDFSHFR 88 (149)
T ss_dssp HHSCCSCCT
T ss_pred HHHHHHHHH
Confidence 999998853
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.78 E-value=4.1e-20 Score=151.95 Aligned_cols=85 Identities=18% Similarity=0.300 Sum_probs=79.3
Q ss_pred CCCCcccEEecCCcCcCCcchHHHHHHHHhcC--CceeEEeC-CCCCCCcchHHHHHHHH-hcCcEEEEeecCcccchhh
Q 048215 3 SSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQ--NIQTFIDD-QLNRGYEISESLVKAIK-ASAISVIIFSEDYASSRWC 78 (305)
Q Consensus 3 s~~~~~dVFis~~~~D~~~~f~~~L~~~L~~~--gi~~f~d~-~~~~g~~~~~~i~~ai~-~s~~~ivv~S~~y~~S~~c 78 (305)
+..+.|||||||+++| ..|+.+|+.+|+++ |+++|+|+ ++.+|+.+.++|.+||+ +|+.+|+|||++|+.|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 3467899999999999 68999999999985 69999998 99999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHHh
Q 048215 79 LDELAEILECK 89 (305)
Q Consensus 79 l~EL~~i~e~~ 89 (305)
+.||..++++.
T Consensus 90 ~~El~~a~~~~ 100 (160)
T 2js7_A 90 DFQTKFALSLS 100 (160)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.78 E-value=7.4e-20 Score=150.27 Aligned_cols=84 Identities=23% Similarity=0.405 Sum_probs=77.2
Q ss_pred CcccEEecCCcCcC---------CcchHHHHHH-HHh-cCCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcc
Q 048215 6 KKYDVFVSFRGEDT---------LDDFTSHLYS-ALS-RQNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYA 73 (305)
Q Consensus 6 ~~~dVFis~~~~D~---------~~~f~~~L~~-~L~-~~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~ 73 (305)
+.|||||||+++|+ +..||.+|.. +|+ +.|+++|+|+ ++.+|+.+.++|.+||++|+..|+|||+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999997 3679999776 699 7999999998 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHHh
Q 048215 74 -SSRWCLDELAEILECK 89 (305)
Q Consensus 74 -~S~~cl~EL~~i~e~~ 89 (305)
.|.||+.|+..++.+.
T Consensus 81 ~~S~wc~~El~~a~~~~ 97 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNM 97 (159)
T ss_dssp HTTTTHHHHHSHHHHHH
T ss_pred hcChHHHHHHHHHHHHH
Confidence 9999999999999986
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.77 E-value=5e-20 Score=153.86 Aligned_cols=85 Identities=21% Similarity=0.405 Sum_probs=77.5
Q ss_pred CCCCcccEEecCCcCcCCcchHH-HHHHHHhc--CCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhh
Q 048215 3 SSTKKYDVFVSFRGEDTLDDFTS-HLYSALSR--QNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYASSRWC 78 (305)
Q Consensus 3 s~~~~~dVFis~~~~D~~~~f~~-~L~~~L~~--~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~c 78 (305)
...+.|||||||+++| .+|+. +|+.+|++ .|+++|+|+ ++.+|+.+.++|.+||++|+..|+|||+||+.|.||
T Consensus 31 ~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc 108 (178)
T 2j67_A 31 KRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108 (178)
T ss_dssp CCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred CCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence 3457899999999999 47997 59999998 899999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 048215 79 LDELAEILECK 89 (305)
Q Consensus 79 l~EL~~i~e~~ 89 (305)
+.||..++.+.
T Consensus 109 ~~El~~a~~~~ 119 (178)
T 2j67_A 109 HYEFYFAHHNL 119 (178)
T ss_dssp GTHHHHTTCC-
T ss_pred HHHHHHHHHHH
Confidence 99999998653
No 9
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.64 E-value=1.3e-16 Score=155.66 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=90.6
Q ss_pred ccccchhhhHHHhhccCCC-C---ceEeCC-C----------c-----ccccccc--------c----------------
Q 048215 176 VGVESRVEEIESLLSVESK-D---VYALGF-G----------A-----SVDENAI--------P---------------- 211 (305)
Q Consensus 176 vG~~~~~~~l~~~L~~~~~-~---v~ivGi-G----------~-----~v~e~~~--------~---------------- 211 (305)
+||+.++++|.++|..... . |.|+|| | . .++.+|+ .
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 5999999999999976422 2 788899 6 1 2444443 0
Q ss_pred --------------------chhhhhhhhcCC-ceeEEeccCCCHHHHHHHHhcCCCCCCCcEEEEEcCChHHHHhcC-C
Q 048215 212 --------------------GNDLNSRRLSCM-KVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWG-V 269 (305)
Q Consensus 212 --------------------~~~~l~~~l~~k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~-~ 269 (305)
....+++.|.++ |+||||||||+.+++ .+.. .+||+||||||++.++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 135677788896 999999999998876 3322 27999999999999999886 4
Q ss_pred CceEEcCCCChHHHHHHHHHhhcCCCC
Q 048215 270 RKICEMEALEYHHALELFSRHAFKQNH 296 (305)
Q Consensus 270 ~~~~~v~~L~~~ea~~Lf~~~Af~~~~ 296 (305)
..+|+|++|+.+|||+||+++||+...
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 311 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV 311 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC-
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCC
Confidence 578999999999999999999998643
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.45 E-value=1.4e-13 Score=144.83 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=89.8
Q ss_pred CCCCCcccccchhhhHHHhhccCCCC---ceEeCC-C-----------cc---cccccc---------------------
Q 048215 170 DNKSQLVGVESRVEEIESLLSVESKD---VYALGF-G-----------AS---VDENAI--------------------- 210 (305)
Q Consensus 170 ~~~~~~vG~~~~~~~l~~~L~~~~~~---v~ivGi-G-----------~~---v~e~~~--------------------- 210 (305)
..+..+|||+.++++|.++|.....+ |.|+|| | .+ +..+|.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 45677999999999999999754444 778888 6 11 121121
Q ss_pred ---------------------cchhhhhhhhcCC--ceeEEeccCCCHHHHHHHHhcCCCCCCCcEEEEEcCChHHHHh-
Q 048215 211 ---------------------PGNDLNSRRLSCM--KVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRN- 266 (305)
Q Consensus 211 ---------------------~~~~~l~~~l~~k--r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~- 266 (305)
.....++..|.++ |+||||||||+..+|+.+ ++||+||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 0233455556555 999999999999887653 689999999999999965
Q ss_pred cCCCceEEcCC-CChHHHHHHHHHhhcCC
Q 048215 267 WGVRKICEMEA-LEYHHALELFSRHAFKQ 294 (305)
Q Consensus 267 ~~~~~~~~v~~-L~~~ea~~Lf~~~Af~~ 294 (305)
++..+.+.+++ |+.+||++||+..|+..
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~ 302 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMK 302 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCC
Confidence 45678899996 99999999999999643
No 11
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.35 E-value=7.4e-13 Score=135.09 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=55.8
Q ss_pred cCCceeEEeccCCCHHHHHHHHhcCCCCCCCcEEEEEcCChHHHHhcCCCceEEcC------CCChHHHHHHHHHhhcC
Q 048215 221 SCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEME------ALEYHHALELFSRHAFK 293 (305)
Q Consensus 221 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v~------~L~~~ea~~Lf~~~Af~ 293 (305)
.+||+||||||||+.++|+.+. +||+||||||++.++..++....|+|+ +|+.+|||+||+++ |+
T Consensus 242 ~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g 312 (1221)
T 1vt4_I 242 PYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LD 312 (1221)
T ss_dssp TTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HC
T ss_pred cCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cC
Confidence 5799999999999999998762 799999999999999755444467777 99999999999998 44
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.34 E-value=7.6e-13 Score=135.11 Aligned_cols=84 Identities=19% Similarity=0.346 Sum_probs=76.3
Q ss_pred CCCcccEEecCCcCcCCcchH-HHHHHHHhc-----CCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcccch
Q 048215 4 STKKYDVFVSFRGEDTLDDFT-SHLYSALSR-----QNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYASSR 76 (305)
Q Consensus 4 ~~~~~dVFis~~~~D~~~~f~-~~L~~~L~~-----~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~ 76 (305)
..+.|||||||+++| ..|| ..|...|+. .|+++|+++ ++.+|+.+.++|.+||++|+..|+|+|++|+.|.
T Consensus 667 ~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 356899999999999 4677 679999974 689999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHh
Q 048215 77 WCLDELAEILECK 89 (305)
Q Consensus 77 ~cl~EL~~i~e~~ 89 (305)
||..|+..++.+.
T Consensus 745 wc~~e~~~a~~~~ 757 (844)
T 3j0a_A 745 WCLEAFSYAQGRC 757 (844)
T ss_dssp STTHHHHHHHSCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 13
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.21 E-value=1.9e-11 Score=119.72 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=85.3
Q ss_pred CCCCCcccccchhhhHHHhhccCCCC---ceEeCC-C-----------cc--c-ccccc-----------c---------
Q 048215 170 DNKSQLVGVESRVEEIESLLSVESKD---VYALGF-G-----------AS--V-DENAI-----------P--------- 211 (305)
Q Consensus 170 ~~~~~~vG~~~~~~~l~~~L~~~~~~---v~ivGi-G-----------~~--v-~e~~~-----------~--------- 211 (305)
..+..+|||+.+++.|.++|...... |.|+|+ | .. + +..|. +
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~ 200 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQ 200 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHH
Confidence 45678999999999999999753333 778888 6 11 1 33332 0
Q ss_pred ----------------------chhhhhhhhcC--CceeEEeccCCCHHHHHHHHhcCCCCCCCcEEEEEcCChHHHHhc
Q 048215 212 ----------------------GNDLNSRRLSC--MKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNW 267 (305)
Q Consensus 212 ----------------------~~~~l~~~l~~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 267 (305)
....++..+.+ +++||||||||+..+++. +++||+||||||+..++..+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhc
Confidence 11223444444 789999999999877653 36799999999999998765
Q ss_pred CCCceEEc---CCCChHHHHHHHHHhhcC
Q 048215 268 GVRKICEM---EALEYHHALELFSRHAFK 293 (305)
Q Consensus 268 ~~~~~~~v---~~L~~~ea~~Lf~~~Af~ 293 (305)
+ ...|++ ++|+.+||++||+..++.
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCC
Confidence 4 355666 489999999999999975
No 14
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.39 E-value=6.6e-05 Score=56.95 Aligned_cols=64 Identities=5% Similarity=0.042 Sum_probs=47.8
Q ss_pred CCcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhHHHHHH
Q 048215 5 TKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAE 84 (305)
Q Consensus 5 ~~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~EL~~ 84 (305)
..+|.|||||...|... .|...|.+.|+. |.| ..|+.|.+.||+.+++.++|+||..|+..
T Consensus 2 ~~~~~lFISh~~~d~~~----~L~~~l~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 2 TAEIRLYITEGEVEDYR----VFLERLEQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCCEEEEECCCCSHHHH----HHHHHHHHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred CceEEEEEecccHhHHH----HHHHHHhCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 45799999999999333 333333455664 444 45678999999999999999999999875
Q ss_pred HHH
Q 048215 85 ILE 87 (305)
Q Consensus 85 i~e 87 (305)
..+
T Consensus 63 A~~ 65 (111)
T 1eiw_A 63 ARK 65 (111)
T ss_dssp HTT
T ss_pred HHH
Confidence 554
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.21 E-value=0.00036 Score=64.36 Aligned_cols=69 Identities=7% Similarity=0.141 Sum_probs=44.0
Q ss_pred CCceeEEeccCCCH--------HHHHHHHhcCCCC---C--CCcEEEEEcCChHHHHhc---------CCCceEEcCCCC
Q 048215 222 CMKVLIVFDDVTCF--------SQLESIIGSLDWL---M--PVSRTIITTRNKQVLRNW---------GVRKICEMEALE 279 (305)
Q Consensus 222 ~kr~LlVLDdv~~~--------~~~~~l~~~~~~~---~--~gsrIIiTTR~~~v~~~~---------~~~~~~~v~~L~ 279 (305)
+++++|||||++.. +.+..+...+... + ....+|+||+...+...+ .....+.+++|+
T Consensus 137 ~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~ 216 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYK 216 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCC
T ss_pred CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCC
Confidence 57899999999753 3344333322211 2 344588888766543211 112339999999
Q ss_pred hHHHHHHHHHh
Q 048215 280 YHHALELFSRH 290 (305)
Q Consensus 280 ~~ea~~Lf~~~ 290 (305)
.++++++|...
T Consensus 217 ~~e~~~ll~~~ 227 (412)
T 1w5s_A 217 SRELYTILEQR 227 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.98 E-value=0.0032 Score=52.72 Aligned_cols=122 Identities=12% Similarity=0.085 Sum_probs=79.7
Q ss_pred CCCcccccchhhhHHHhhccCCC--CceEeCC-C-----------ccccc-------------------------ccc--
Q 048215 172 KSQLVGVESRVEEIESLLSVESK--DVYALGF-G-----------ASVDE-------------------------NAI-- 210 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~~--~v~ivGi-G-----------~~v~e-------------------------~~~-- 210 (305)
..+++|++..++.+..++..+.. .+.+.|- | ..... .+.
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 101 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEE
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEec
Confidence 35689999999999998876432 3778898 7 00000 000
Q ss_pred ----cchhhhh---hh-----hcCCceeEEeccCC--CHHHHHHHHhcCCCCCCCcEEEEEcCChHHHH-h-cCCCceEE
Q 048215 211 ----PGNDLNS---RR-----LSCMKVLIVFDDVT--CFSQLESIIGSLDWLMPVSRTIITTRNKQVLR-N-WGVRKICE 274 (305)
Q Consensus 211 ----~~~~~l~---~~-----l~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~-~-~~~~~~~~ 274 (305)
.....++ +. ..+++.+|||||++ +...++.+...+.....+.++|+||+....+. . ......++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~ 181 (250)
T 1njg_A 102 AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 181 (250)
T ss_dssp TTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred CcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhcc
Confidence 0111111 11 23467999999996 45677777766665567889999987654221 1 11235789
Q ss_pred cCCCChHHHHHHHHHhhcC
Q 048215 275 MEALEYHHALELFSRHAFK 293 (305)
Q Consensus 275 v~~L~~~ea~~Lf~~~Af~ 293 (305)
+++++.++..+++...+..
T Consensus 182 l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 182 LKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999987654
No 17
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.0037 Score=51.70 Aligned_cols=121 Identities=7% Similarity=0.054 Sum_probs=78.2
Q ss_pred CCCcccccchhhhHHHhhccCCC-CceEeCC-C-------cccccc-----cc---------c------chhhhhhhh--
Q 048215 172 KSQLVGVESRVEEIESLLSVESK-DVYALGF-G-------ASVDEN-----AI---------P------GNDLNSRRL-- 220 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~~-~v~ivGi-G-------~~v~e~-----~~---------~------~~~~l~~~l-- 220 (305)
..+++|++..++.+.+++..... .+.+.|- | ..+.+. +. + ....+....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 46789999999999999876432 3888999 7 111110 00 0 111222222
Q ss_pred ----cCCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChHHHH-h-cCCCceEEcCCCChHHHHHHHHHhhc
Q 048215 221 ----SCMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQVLR-N-WGVRKICEMEALEYHHALELFSRHAF 292 (305)
Q Consensus 221 ----~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~-~-~~~~~~~~v~~L~~~ea~~Lf~~~Af 292 (305)
..++.+|||||++. ...++.+...+.....++++|+||+...-+. . ...-..+++++++.++..+++...+.
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHH
Confidence 25688999999975 3556666655555567889999987754211 1 11123789999999999999988764
No 18
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.67 E-value=0.0022 Score=57.38 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=44.9
Q ss_pred CceeEEeccCCCHH---------HHHHHHhcCCCCCCCcEEEEEcCChHHHHhc-----------CC-CceEEcCCCChH
Q 048215 223 MKVLIVFDDVTCFS---------QLESIIGSLDWLMPVSRTIITTRNKQVLRNW-----------GV-RKICEMEALEYH 281 (305)
Q Consensus 223 kr~LlVLDdv~~~~---------~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~-----------~~-~~~~~v~~L~~~ 281 (305)
.+++|||||++... .+..+...... .++.++|+|++...++..+ +. ...+++.+|+.+
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHH
Confidence 38999999997532 23444332221 2578999999886543321 11 247899999999
Q ss_pred HHHHHHHHh
Q 048215 282 HALELFSRH 290 (305)
Q Consensus 282 ea~~Lf~~~ 290 (305)
|+.+++...
T Consensus 207 e~~~~l~~~ 215 (350)
T 2qen_A 207 TSVEFLKRG 215 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.67 E-value=0.0045 Score=56.13 Aligned_cols=120 Identities=12% Similarity=0.084 Sum_probs=71.8
Q ss_pred CCCCCcccccchhhhHHHhhcc-----CCCCceEeCC-C-----------ccccc-------ccc----c----------
Q 048215 170 DNKSQLVGVESRVEEIESLLSV-----ESKDVYALGF-G-----------ASVDE-------NAI----P---------- 211 (305)
Q Consensus 170 ~~~~~~vG~~~~~~~l~~~L~~-----~~~~v~ivGi-G-----------~~v~e-------~~~----~---------- 211 (305)
..++.++|++..++.+..+|.. ....+.|+|. | ..... ... +
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 4457899999999999998843 2234888999 7 11100 000 0
Q ss_pred ---------------------chhhhhhhh--cCCceeEEeccCCCHH----HHHHHH---hcCCCC--CCCcEEEEEcC
Q 048215 212 ---------------------GNDLNSRRL--SCMKVLIVFDDVTCFS----QLESII---GSLDWL--MPVSRTIITTR 259 (305)
Q Consensus 212 ---------------------~~~~l~~~l--~~kr~LlVLDdv~~~~----~~~~l~---~~~~~~--~~gsrIIiTTR 259 (305)
....+...+ .+++.+||||+++... ..+.+. ...... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 012233334 3458899999998653 223332 222211 44667888887
Q ss_pred ChH--------HHHhcCCCceEEcCCCChHHHHHHHHHh
Q 048215 260 NKQ--------VLRNWGVRKICEMEALEYHHALELFSRH 290 (305)
Q Consensus 260 ~~~--------v~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 290 (305)
... +...++ ...+.+++++.++..+++...
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~ 213 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETR 213 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHH
Confidence 652 222222 247889999999999999887
No 20
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0034 Score=56.88 Aligned_cols=122 Identities=14% Similarity=0.168 Sum_probs=73.9
Q ss_pred CCCCCcccccchhhhHHHhhcc---C--CCCceEeCC-C-----------ccccc----ccc----c-------------
Q 048215 170 DNKSQLVGVESRVEEIESLLSV---E--SKDVYALGF-G-----------ASVDE----NAI----P------------- 211 (305)
Q Consensus 170 ~~~~~~vG~~~~~~~l~~~L~~---~--~~~v~ivGi-G-----------~~v~e----~~~----~------------- 211 (305)
..+.+++||+..++.+.++|.. . ...+.|+|. | ..+.. ... +
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 4568899999999999998874 1 223888999 7 11110 000 0
Q ss_pred ------------------chhhhhhhhc--CCceeEEeccCCCH------HHHHHHHhcCCC-CCCCcEEEEEcCChHHH
Q 048215 212 ------------------GNDLNSRRLS--CMKVLIVFDDVTCF------SQLESIIGSLDW-LMPVSRTIITTRNKQVL 264 (305)
Q Consensus 212 ------------------~~~~l~~~l~--~kr~LlVLDdv~~~------~~~~~l~~~~~~-~~~gsrIIiTTR~~~v~ 264 (305)
....+...+. +++.+||||+++.. ..+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 0122233333 34899999999753 234444333321 23456778888876543
Q ss_pred HhcC------C-CceEEcCCCChHHHHHHHHHhh
Q 048215 265 RNWG------V-RKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 265 ~~~~------~-~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
..+. . ...+.+++++.++..+++...+
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 3221 1 2479999999999999998753
No 21
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.48 E-value=0.0022 Score=57.49 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=44.2
Q ss_pred CceeEEeccCCCHH------HHHHHHhcCCCCCCCcEEEEEcCChHHHHhc-----------CC-CceEEcCCCChHHHH
Q 048215 223 MKVLIVFDDVTCFS------QLESIIGSLDWLMPVSRTIITTRNKQVLRNW-----------GV-RKICEMEALEYHHAL 284 (305)
Q Consensus 223 kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~-----------~~-~~~~~v~~L~~~ea~ 284 (305)
++++|||||+.... .+..+..... ..++.++|+|++....+..+ +. ...+++.+|+.+|+.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 48999999996532 1222322111 12478999999987643311 11 257899999999999
Q ss_pred HHHHHh
Q 048215 285 ELFSRH 290 (305)
Q Consensus 285 ~Lf~~~ 290 (305)
+++...
T Consensus 216 ~~l~~~ 221 (357)
T 2fna_A 216 EFLRRG 221 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 22
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.0079 Score=54.70 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=47.1
Q ss_pred hhhhcCCceeEEeccCCCHHH---HHH-HHhcCCCCCCCcEEEEEcCChH--------HHHhcCCCceEEcCCCChHHHH
Q 048215 217 SRRLSCMKVLIVFDDVTCFSQ---LES-IIGSLDWLMPVSRTIITTRNKQ--------VLRNWGVRKICEMEALEYHHAL 284 (305)
Q Consensus 217 ~~~l~~kr~LlVLDdv~~~~~---~~~-l~~~~~~~~~gsrIIiTTR~~~--------v~~~~~~~~~~~v~~L~~~ea~ 284 (305)
...+..++.+|||||++.... .+. +...+.+. .+.++|+||+... +...+ ...+.+++++.++..
T Consensus 127 ~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~--~~~i~l~~l~~~~~~ 203 (384)
T 2qby_B 127 KNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSL--GPSVIFKPYDAEQLK 203 (384)
T ss_dssp HHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTC--CCEEEECCCCHHHHH
T ss_pred HHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcC--CCeEEECCCCHHHHH
Confidence 334555556999999976432 122 22212222 7888999998753 22222 238999999999999
Q ss_pred HHHHHhh
Q 048215 285 ELFSRHA 291 (305)
Q Consensus 285 ~Lf~~~A 291 (305)
++|...+
T Consensus 204 ~il~~~~ 210 (384)
T 2qby_B 204 FILSKYA 210 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999873
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.80 E-value=0.016 Score=51.17 Aligned_cols=121 Identities=11% Similarity=0.179 Sum_probs=76.7
Q ss_pred CCCcccccchhhhHHHhhccCC-CCceEeCC-C-------cccccc-----cc---------c--chhhh----hhh---
Q 048215 172 KSQLVGVESRVEEIESLLSVES-KDVYALGF-G-------ASVDEN-----AI---------P--GNDLN----SRR--- 219 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~-~~v~ivGi-G-------~~v~e~-----~~---------~--~~~~l----~~~--- 219 (305)
..+++|++..++.+.+++..+. ..+-+.|. | ..+.+. +. + ....+ ...
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQK 99 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhc
Confidence 3678999999999999987643 23888899 7 111000 00 1 11122 211
Q ss_pred ---h-cCCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChHH-HHhc-CCCceEEcCCCChHHHHHHHHHhh
Q 048215 220 ---L-SCMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQV-LRNW-GVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 220 ---l-~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~v-~~~~-~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
+ .+++.+||+||++. ...++.|...+.....++++|+||....- ...+ ..-..+++++++.++..+++...+
T Consensus 100 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 100 KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHH
Confidence 2 34588999999975 45556565555545577888888876432 1111 112479999999999999998765
Q ss_pred c
Q 048215 292 F 292 (305)
Q Consensus 292 f 292 (305)
-
T Consensus 180 ~ 180 (323)
T 1sxj_B 180 K 180 (323)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.18 E-value=0.074 Score=46.86 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=78.0
Q ss_pred CCCcccccchhhhHHHhhccCCC-CceEeCC-C-----------cccc-cc----c-c----c------chhhhhhh---
Q 048215 172 KSQLVGVESRVEEIESLLSVESK-DVYALGF-G-----------ASVD-EN----A-I----P------GNDLNSRR--- 219 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~~-~v~ivGi-G-----------~~v~-e~----~-~----~------~~~~l~~~--- 219 (305)
..+++|++..++.+.+++..+.. .+-+.|- | ..+. .. + . + ....+...
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 103 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHS
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhh
Confidence 46799999999999998876532 3888898 7 1110 00 0 0 1 11122221
Q ss_pred --hc-CCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChH-----HHHhcCCCceEEcCCCChHHHHHHHHH
Q 048215 220 --LS-CMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQ-----VLRNWGVRKICEMEALEYHHALELFSR 289 (305)
Q Consensus 220 --l~-~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~-----v~~~~~~~~~~~v~~L~~~ea~~Lf~~ 289 (305)
+. +++.+||+|+++. ...++.|...+.....++++|+||.... +...+ ..+.+++++.++..+++..
T Consensus 104 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~---~~~~~~~l~~~~~~~~l~~ 180 (327)
T 1iqp_A 104 KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC---AIFRFRPLRDEDIAKRLRY 180 (327)
T ss_dssp CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE---EEEECCCCCHHHHHHHHHH
T ss_pred CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC---cEEEecCCCHHHHHHHHHH
Confidence 22 5688999999974 4566767666655567889999887643 22222 3789999999999999887
Q ss_pred hhcC
Q 048215 290 HAFK 293 (305)
Q Consensus 290 ~Af~ 293 (305)
.+-.
T Consensus 181 ~~~~ 184 (327)
T 1iqp_A 181 IAEN 184 (327)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6643
No 25
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.13 E-value=0.068 Score=48.35 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=48.7
Q ss_pred CCceeEEeccCCC--HHHHHHHHhcCCCCC----CCcEEEEEcCChHHHHhcC-------CCceEEcCCCChHHHHHHHH
Q 048215 222 CMKVLIVFDDVTC--FSQLESIIGSLDWLM----PVSRTIITTRNKQVLRNWG-------VRKICEMEALEYHHALELFS 288 (305)
Q Consensus 222 ~kr~LlVLDdv~~--~~~~~~l~~~~~~~~----~gsrIIiTTR~~~v~~~~~-------~~~~~~v~~L~~~ea~~Lf~ 288 (305)
+++.+||||+++. ...+..|...+.... .+..+|+||+...+...+. ....+.+++++.++..+++.
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 4578999999975 455666655544322 4678888888775443321 12369999999999999998
Q ss_pred Hhh
Q 048215 289 RHA 291 (305)
Q Consensus 289 ~~A 291 (305)
..+
T Consensus 204 ~~~ 206 (389)
T 1fnn_A 204 DRA 206 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.80 E-value=0.075 Score=46.14 Aligned_cols=126 Identities=19% Similarity=0.247 Sum_probs=73.7
Q ss_pred CCCCCcccccchhhhHHHhhcc--------------CCCCceEeCC-C-------ccccccc-------------c----
Q 048215 170 DNKSQLVGVESRVEEIESLLSV--------------ESKDVYALGF-G-------ASVDENA-------------I---- 210 (305)
Q Consensus 170 ~~~~~~vG~~~~~~~l~~~L~~--------------~~~~v~ivGi-G-------~~v~e~~-------------~---- 210 (305)
...++++|++..++.|.+.+.. ....+-++|- | ..+.... .
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~ 93 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIG 93 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTT
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccc
Confidence 3457899999999999887643 2234888999 7 1111000 0
Q ss_pred c----chhhhhhhhcCCceeEEeccCCCH----------------HHHHHHHhcCC--CCCCCcEEEEEcCChHHHH---
Q 048215 211 P----GNDLNSRRLSCMKVLIVFDDVTCF----------------SQLESIIGSLD--WLMPVSRTIITTRNKQVLR--- 265 (305)
Q Consensus 211 ~----~~~~l~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~--~~~~gsrIIiTTR~~~v~~--- 265 (305)
. ....+.........+|+||+++.. ..+..+...+. ....+..||.||...+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l 173 (285)
T 3h4m_A 94 EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAI 173 (285)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHH
Confidence 0 111122222345679999999653 12223322222 1234667888887553332
Q ss_pred --hcCCCceEEcCCCChHHHHHHHHHhhcCCC
Q 048215 266 --NWGVRKICEMEALEYHHALELFSRHAFKQN 295 (305)
Q Consensus 266 --~~~~~~~~~v~~L~~~ea~~Lf~~~Af~~~ 295 (305)
.......+.++.++.++-.+++..++....
T Consensus 174 ~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~ 205 (285)
T 3h4m_A 174 LRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN 205 (285)
T ss_dssp HSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC
T ss_pred cCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC
Confidence 112235789999999999999998875433
No 27
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=93.87 E-value=0.087 Score=42.98 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=57.8
Q ss_pred cccEEecC--------------CcCcCCcchHHHHHHHHhcCCceeEEeC-CC----CC----CCcchHHHHHHHHhcCc
Q 048215 7 KYDVFVSF--------------RGEDTLDDFTSHLYSALSRQNIQTFIDD-QL----NR----GYEISESLVKAIKASAI 63 (305)
Q Consensus 7 ~~dVFis~--------------~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~----~~----g~~~~~~i~~ai~~s~~ 63 (305)
+--+|+.| ..+| ..+.+.|..--....+..|.|- ++ .- -..|.+.|.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44589999 2333 3345555554444456667774 43 12 34577889999999999
Q ss_pred EEEEeecCcccchhhHHHHHHHH-HH
Q 048215 64 SVIIFSEDYASSRWCLDELAEIL-EC 88 (305)
Q Consensus 64 ~ivv~S~~y~~S~~cl~EL~~i~-e~ 88 (305)
.|+++|++...|.|-.-|+...+ ++
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~~~ 108 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIGTK 108 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTTTT
T ss_pred EEEEEecCccccchhHHHHHHHHHhc
Confidence 99999999999999999998887 54
No 28
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.18 E-value=0.65 Score=40.46 Aligned_cols=121 Identities=8% Similarity=0.116 Sum_probs=77.3
Q ss_pred CCCcccccchhhhHHHhhccCCC-CceEeCC-C-----------ccc-----ccccc-----------cchhhhhhh---
Q 048215 172 KSQLVGVESRVEEIESLLSVESK-DVYALGF-G-----------ASV-----DENAI-----------PGNDLNSRR--- 219 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~~-~v~ivGi-G-----------~~v-----~e~~~-----------~~~~~l~~~--- 219 (305)
..+++|++..++.+.+++..+.. .+-+.|- | ..+ ...+- .....+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhc
Confidence 35689999999999988876432 3888898 7 111 00000 011222222
Q ss_pred --h-cCCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChH-HHHhc-CCCceEEcCCCChHHHHHHHHHhhc
Q 048215 220 --L-SCMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQ-VLRNW-GVRKICEMEALEYHHALELFSRHAF 292 (305)
Q Consensus 220 --l-~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~Af 292 (305)
+ .+++.++|+|+++. ....+.|...+....+++++|+||.... +...+ ..-..+.+++++.++..+++...+-
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 2 25678999999974 4556777777766667888888886653 11111 1124789999999999998887654
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.50 E-value=0.73 Score=39.01 Aligned_cols=71 Identities=11% Similarity=0.209 Sum_probs=41.7
Q ss_pred CCceeEEeccCCCH-----------------HHHHHHHhcCCCC--CCCcEEEEEcCChHHHHh----c-CCCceEEcCC
Q 048215 222 CMKVLIVFDDVTCF-----------------SQLESIIGSLDWL--MPVSRTIITTRNKQVLRN----W-GVRKICEMEA 277 (305)
Q Consensus 222 ~kr~LlVLDdv~~~-----------------~~~~~l~~~~~~~--~~gsrIIiTTR~~~v~~~----~-~~~~~~~v~~ 277 (305)
....+|+||+++.. ..+..+...+... ..+..||.||.....+.. . .....+.++.
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 45789999999854 1122332222221 235567777766543321 1 2346788999
Q ss_pred CChHHHHHHHHHhhc
Q 048215 278 LEYHHALELFSRHAF 292 (305)
Q Consensus 278 L~~~ea~~Lf~~~Af 292 (305)
.+.++-.+++..++-
T Consensus 177 p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 177 PTLQERREIFEQHLK 191 (262)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999887653
No 30
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.94 E-value=0.1 Score=41.64 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=25.0
Q ss_pred CCCcccccchhhhHHHhhccCC-CCceEeCC-C
Q 048215 172 KSQLVGVESRVEEIESLLSVES-KDVYALGF-G 202 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~-~~v~ivGi-G 202 (305)
..+++|++..++.+.+.+.... ..+-++|- |
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G 53 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPG 53 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTT
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCC
Confidence 4679999999999999887643 33888999 7
No 31
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.87 E-value=1.3 Score=39.58 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=47.7
Q ss_pred CCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChH-HHHhc-CCCceEEcCCCChHHHHHHHHHhh
Q 048215 222 CMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQ-VLRNW-GVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 222 ~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
+++.+||+||+.. ...++.|...+.....+..+|++|.... +...+ ..-..+++++++.++..+++...+
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 4578999999964 4566777666655556778888776443 11111 112578999999999999887654
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.66 E-value=0.64 Score=41.97 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=75.6
Q ss_pred hhhhhhhhhhhhhhhccccccCCCCCCCCcccccchhhhHHHhhcc-------------CCCCceEeCC-C-------cc
Q 048215 146 ESELINEVVNNILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSV-------------ESKDVYALGF-G-------AS 204 (305)
Q Consensus 146 e~~~I~~Iv~~v~~~l~~~~~s~~~~~~~~vG~~~~~~~l~~~L~~-------------~~~~v~ivGi-G-------~~ 204 (305)
+..+++.+...+....++. ..++++|.+..++.|.+++.. ....+.++|- | ..
T Consensus 63 ~~~~~~~i~~~i~~~~~~~------~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGPPV------NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CHHHHHHHHHHTBCCSCCC------CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHH
T ss_pred ChHHHHHHHhhcccCCCCC------CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHH
Confidence 4455666666665544333 336799999999998887642 1223888999 7 11
Q ss_pred cccccc-----------------cchhhhh----hhhcCCceeEEeccCCCH-------------HHHHHHHhcCC----
Q 048215 205 VDENAI-----------------PGNDLNS----RRLSCMKVLIVFDDVTCF-------------SQLESIIGSLD---- 246 (305)
Q Consensus 205 v~e~~~-----------------~~~~~l~----~~l~~kr~LlVLDdv~~~-------------~~~~~l~~~~~---- 246 (305)
+..... .....++ ..-..+..+|+||+++.. ..+..+...+.
T Consensus 137 ia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 137 IASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp HHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---
T ss_pred HHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc
Confidence 111000 0111111 112345789999999532 11222222221
Q ss_pred CCCCCcEEEEEcCChHHHH-h--cCCCceEEcCCCChHHHHHHHHHhh
Q 048215 247 WLMPVSRTIITTRNKQVLR-N--WGVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 247 ~~~~gsrIIiTTR~~~v~~-~--~~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
....+-.||.||.....+. . -.....+.++..+.++-.+++...+
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLM 264 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH
Confidence 1223456666775432211 0 0234577899999998888887765
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.79 E-value=1.1 Score=39.28 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=71.7
Q ss_pred CCCCcccccchhhhHHHhhcc------CCCCceEeCC-C-------cccccccc-----------cchhhhhhhhc---C
Q 048215 171 NKSQLVGVESRVEEIESLLSV------ESKDVYALGF-G-------ASVDENAI-----------PGNDLNSRRLS---C 222 (305)
Q Consensus 171 ~~~~~vG~~~~~~~l~~~L~~------~~~~v~ivGi-G-------~~v~e~~~-----------~~~~~l~~~l~---~ 222 (305)
...+++|++..++.+..++.. ....+.+.|- | ..+...+. .....+...+. .
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 89 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLE 89 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCC
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhcc
Confidence 346799999998888887752 2234889999 7 11111100 11223333343 3
Q ss_pred CceeEEeccCCCH--HHHHHHHhcCCCC------------------CCCcEEEEEcCChHHHH-hc--CCCceEEcCCCC
Q 048215 223 MKVLIVFDDVTCF--SQLESIIGSLDWL------------------MPVSRTIITTRNKQVLR-NW--GVRKICEMEALE 279 (305)
Q Consensus 223 kr~LlVLDdv~~~--~~~~~l~~~~~~~------------------~~gsrIIiTTR~~~v~~-~~--~~~~~~~v~~L~ 279 (305)
+..+|+||++... .....+...+... .++.++|.||....... .+ .....+.+++++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 5779999999753 3444443322211 02456777666443211 11 123578999999
Q ss_pred hHHHHHHHHHhhcC
Q 048215 280 YHHALELFSRHAFK 293 (305)
Q Consensus 280 ~~ea~~Lf~~~Af~ 293 (305)
.++..+++...+-.
T Consensus 170 ~~e~~~~l~~~~~~ 183 (324)
T 1hqc_A 170 PEELAQGVMRDARL 183 (324)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887643
No 34
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.41 E-value=0.45 Score=39.50 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=41.4
Q ss_pred CCceeEEeccCCCH--HH--HHHHHhcCCCC-CCCc-EEEEEcCC---------hHHHHhcCCCceEEcCCCChHHHHHH
Q 048215 222 CMKVLIVFDDVTCF--SQ--LESIIGSLDWL-MPVS-RTIITTRN---------KQVLRNWGVRKICEMEALEYHHALEL 286 (305)
Q Consensus 222 ~kr~LlVLDdv~~~--~~--~~~l~~~~~~~-~~gs-rIIiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~L 286 (305)
.+..+|||||++.. .. .+.+...+... ..+. ++|+||+. ..+...+.....+++++++.++..++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~ 182 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAA 182 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHH
Confidence 34678999999743 11 22232221111 1232 57777763 22332222236789999999999999
Q ss_pred HHHhhc
Q 048215 287 FSRHAF 292 (305)
Q Consensus 287 f~~~Af 292 (305)
+...+-
T Consensus 183 l~~~~~ 188 (242)
T 3bos_A 183 LQRRAA 188 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.54 E-value=5.3 Score=35.79 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=67.4
Q ss_pred CCCCcccccchhhhHHHhhcc-------------CCCCceEeCC-C-------cccccccc-----------------cc
Q 048215 171 NKSQLVGVESRVEEIESLLSV-------------ESKDVYALGF-G-------ASVDENAI-----------------PG 212 (305)
Q Consensus 171 ~~~~~vG~~~~~~~l~~~L~~-------------~~~~v~ivGi-G-------~~v~e~~~-----------------~~ 212 (305)
...+++|.+..++.|.+.+.. ....+-++|- | ..+..... ..
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~ 128 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 128 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---C
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchH
Confidence 346789999988888876621 1234888898 7 11111000 01
Q ss_pred hhhhh---h-hhcCCceeEEeccCCCHH-------------HHHHHHhc---CCCCCCCcEEEEEcCChH-----HHHhc
Q 048215 213 NDLNS---R-RLSCMKVLIVFDDVTCFS-------------QLESIIGS---LDWLMPVSRTIITTRNKQ-----VLRNW 267 (305)
Q Consensus 213 ~~~l~---~-~l~~kr~LlVLDdv~~~~-------------~~~~l~~~---~~~~~~gsrIIiTTR~~~-----v~~~~ 267 (305)
...++ . ....+..+|+||+++... ....+... +.....+..||.||...+ +..
T Consensus 129 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-- 206 (355)
T 2qp9_X 129 EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-- 206 (355)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--
T ss_pred HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--
Confidence 11111 1 223467899999997431 12222221 212234566776776442 333
Q ss_pred CCCceEEcCCCChHHHHHHHHHhhcC
Q 048215 268 GVRKICEMEALEYHHALELFSRHAFK 293 (305)
Q Consensus 268 ~~~~~~~v~~L~~~ea~~Lf~~~Af~ 293 (305)
.....+.++..+.++-.+++..++-.
T Consensus 207 Rf~~~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 207 RFERRIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred ccCEEEEeCCcCHHHHHHHHHHHHhh
Confidence 34567889999999999998877643
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.30 E-value=2.3 Score=38.62 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=64.2
Q ss_pred CCCcccccchhhhHHHhhcc-------------CCCCceEeCC-C-------cccccccc-----------------cch
Q 048215 172 KSQLVGVESRVEEIESLLSV-------------ESKDVYALGF-G-------ASVDENAI-----------------PGN 213 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~-------------~~~~v~ivGi-G-------~~v~e~~~-----------------~~~ 213 (305)
..+++|.+..++.|.+++.. ....+.++|- | ..+..... ...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~ 193 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGE 193 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHH
Confidence 47899999999999887721 1234888999 7 11111100 011
Q ss_pred hhhhh---h-hcCCceeEEeccCCCH-------------HH----HHHHHhcCCCCCCCcEEEEEcCChHHHH---hcCC
Q 048215 214 DLNSR---R-LSCMKVLIVFDDVTCF-------------SQ----LESIIGSLDWLMPVSRTIITTRNKQVLR---NWGV 269 (305)
Q Consensus 214 ~~l~~---~-l~~kr~LlVLDdv~~~-------------~~----~~~l~~~~~~~~~gsrIIiTTR~~~v~~---~~~~ 269 (305)
..++. . -.....+|+||+++.. .. +..+.+........-.||.||...+.+. .-..
T Consensus 194 ~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~ 273 (389)
T 3vfd_A 194 KLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRF 273 (389)
T ss_dssp HHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTC
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCc
Confidence 11121 1 2344579999999643 11 1122111111123345666665432221 0023
Q ss_pred CceEEcCCCChHHHHHHHHHhhc
Q 048215 270 RKICEMEALEYHHALELFSRHAF 292 (305)
Q Consensus 270 ~~~~~v~~L~~~ea~~Lf~~~Af 292 (305)
...+.++..+.++-.+++...+-
T Consensus 274 ~~~i~i~~p~~~~r~~il~~~~~ 296 (389)
T 3vfd_A 274 IKRVYVSLPNEETRLLLLKNLLC 296 (389)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHT
T ss_pred ceEEEcCCcCHHHHHHHHHHHHH
Confidence 45688999999999999887663
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=85.43 E-value=3 Score=36.77 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=69.4
Q ss_pred CCCCcccccchhhhHHHhhcc-------------CCCCceEeCC-C-------cccccccc-----------------c-
Q 048215 171 NKSQLVGVESRVEEIESLLSV-------------ESKDVYALGF-G-------ASVDENAI-----------------P- 211 (305)
Q Consensus 171 ~~~~~vG~~~~~~~l~~~L~~-------------~~~~v~ivGi-G-------~~v~e~~~-----------------~- 211 (305)
.-.+++|.+..++.|.+++.. ....+-++|- | ..+..... .
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~ 95 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 95 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchH
Confidence 346789999999888887621 1123788898 7 11111000 0
Q ss_pred --chhhh-hhhhcCCceeEEeccCCCHH-------------HHHHHHhc---CCCCCCCcEEEEEcCChHH-----HHhc
Q 048215 212 --GNDLN-SRRLSCMKVLIVFDDVTCFS-------------QLESIIGS---LDWLMPVSRTIITTRNKQV-----LRNW 267 (305)
Q Consensus 212 --~~~~l-~~~l~~kr~LlVLDdv~~~~-------------~~~~l~~~---~~~~~~gsrIIiTTR~~~v-----~~~~ 267 (305)
....+ ...-..+..+|+||+++... ....+... +.....+..||.||..... ...
T Consensus 96 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R- 174 (322)
T 3eie_A 96 EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR- 174 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc-
Confidence 11111 11223456899999997431 12222222 2223455667777766433 222
Q ss_pred CCCceEEcCCCChHHHHHHHHHhhcCC
Q 048215 268 GVRKICEMEALEYHHALELFSRHAFKQ 294 (305)
Q Consensus 268 ~~~~~~~v~~L~~~ea~~Lf~~~Af~~ 294 (305)
....+.++..+.++-.+++..++-+.
T Consensus 175 -f~~~i~~~~p~~~~r~~il~~~~~~~ 200 (322)
T 3eie_A 175 -FERRIYIPLPDLAARTTMFEINVGDT 200 (322)
T ss_dssp -CCEEEECCCCCHHHHHHHHHHHHTTC
T ss_pred -cCeEEEeCCCCHHHHHHHHHHHhccC
Confidence 34678899999999999999876543
No 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.24 E-value=5.6 Score=36.90 Aligned_cols=122 Identities=15% Similarity=0.088 Sum_probs=69.8
Q ss_pred CCCCcccccchhhhHHHhhcc-------------CCCCceEeCC-C-------ccccccc-c------------------
Q 048215 171 NKSQLVGVESRVEEIESLLSV-------------ESKDVYALGF-G-------ASVDENA-I------------------ 210 (305)
Q Consensus 171 ~~~~~vG~~~~~~~l~~~L~~-------------~~~~v~ivGi-G-------~~v~e~~-~------------------ 210 (305)
..++++|.+..++.|.+.+.. ....+.++|- | ..+.... .
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~ 211 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 211 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcch
Confidence 347799999988888876521 1233888899 7 1111111 0
Q ss_pred --cchhhhhhh-hcCCceeEEeccCCCH-------------HHHHHHHhcCCCC---CCCcEEEEEcCChHHHHh---cC
Q 048215 211 --PGNDLNSRR-LSCMKVLIVFDDVTCF-------------SQLESIIGSLDWL---MPVSRTIITTRNKQVLRN---WG 268 (305)
Q Consensus 211 --~~~~~l~~~-l~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~---~~gsrIIiTTR~~~v~~~---~~ 268 (305)
.....+... -.....+|+||+++.. .....+...+... ..+..||.||.....+.. -.
T Consensus 212 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR 291 (444)
T 2zan_A 212 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRR 291 (444)
T ss_dssp CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhh
Confidence 011112222 2345789999999854 1233444433332 345667777765432211 02
Q ss_pred CCceEEcCCCChHHHHHHHHHhhc
Q 048215 269 VRKICEMEALEYHHALELFSRHAF 292 (305)
Q Consensus 269 ~~~~~~v~~L~~~ea~~Lf~~~Af 292 (305)
.+..+.++..+.++-..+|..++-
T Consensus 292 f~~~i~i~~P~~~~r~~il~~~l~ 315 (444)
T 2zan_A 292 FEKRIYIPLPEAHARAAMFRLHLG 315 (444)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHT
T ss_pred cceEEEeCCcCHHHHHHHHHHHHh
Confidence 346788898899888888887764
No 39
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.26 E-value=3.6 Score=39.01 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=40.9
Q ss_pred CCceeEEeccCCCH-----HHHHHHHhcCCCCCCCcEEEEEcCChH---HHHhcCCCceEEcCCCChHHHHHHHHHhhcC
Q 048215 222 CMKVLIVFDDVTCF-----SQLESIIGSLDWLMPVSRTIITTRNKQ---VLRNWGVRKICEMEALEYHHALELFSRHAFK 293 (305)
Q Consensus 222 ~kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gsrIIiTTR~~~---v~~~~~~~~~~~v~~L~~~ea~~Lf~~~Af~ 293 (305)
.++.+|+||+++.. ..+..|...+.. .+..||++|.+.. +.........+.+++++.++..+++...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 56789999999642 112333222211 2344666654432 2222222457899999999999988876643
No 40
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.79 E-value=11 Score=32.86 Aligned_cols=118 Identities=10% Similarity=0.142 Sum_probs=72.0
Q ss_pred CCCcccccchhhhHHHhhccCC-CCceEeCC-C-----------ccccc------ccc-----c--chhhhhhhh-----
Q 048215 172 KSQLVGVESRVEEIESLLSVES-KDVYALGF-G-----------ASVDE------NAI-----P--GNDLNSRRL----- 220 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~-~~v~ivGi-G-----------~~v~e------~~~-----~--~~~~l~~~l----- 220 (305)
..+++|.+..++.+..++..+. ..+-+.|- | ..+.. .+- + ....+++.+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhh
Confidence 4679999999999999887652 23888899 7 11100 000 1 111111111
Q ss_pred ---------------cCCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChH-----HHHhcCCCceEEcCCC
Q 048215 221 ---------------SCMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQ-----VLRNWGVRKICEMEAL 278 (305)
Q Consensus 221 ---------------~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~-----v~~~~~~~~~~~v~~L 278 (305)
...+-+|++|++.. ......|...+.......++|++|.... +...+ ..+.++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~---~~i~~~~~ 192 (353)
T 1sxj_D 116 LTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC---SKFRFKAL 192 (353)
T ss_dssp SCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS---EEEECCCC
T ss_pred hcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC---ceEEeCCC
Confidence 12456899999864 3445555554444455678887775432 22332 37889999
Q ss_pred ChHHHHHHHHHhhc
Q 048215 279 EYHHALELFSRHAF 292 (305)
Q Consensus 279 ~~~ea~~Lf~~~Af 292 (305)
+.++....+...+-
T Consensus 193 ~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 193 DASNAIDRLRFISE 206 (353)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988887653
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.50 E-value=3.2 Score=36.34 Aligned_cols=109 Identities=11% Similarity=0.033 Sum_probs=64.8
Q ss_pred CCCcccccchhhhHHHhhccCCC-C-ceEeCC-C-------cccccccc----------cchhhhhh----hh-----cC
Q 048215 172 KSQLVGVESRVEEIESLLSVESK-D-VYALGF-G-------ASVDENAI----------PGNDLNSR----RL-----SC 222 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~~-~-v~ivGi-G-------~~v~e~~~----------~~~~~l~~----~l-----~~ 222 (305)
.++++|.+..++.+.+++..+.. . +-+.|- | ..+.+... .....++. .. .+
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~ 104 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDG 104 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCSS
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccCC
Confidence 47799999999999998885432 2 445565 5 11111100 01222222 22 23
Q ss_pred CceeEEeccCCCHH---HHHHHHhcCCCCCCCcEEEEEcCChH-----HHHhcCCCceEEcCCCChHHH
Q 048215 223 MKVLIVFDDVTCFS---QLESIIGSLDWLMPVSRTIITTRNKQ-----VLRNWGVRKICEMEALEYHHA 283 (305)
Q Consensus 223 kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gsrIIiTTR~~~-----v~~~~~~~~~~~v~~L~~~ea 283 (305)
++-+|+||++.... ..+.|...+.....+.++|+||.... +...+ ..+++++++.++-
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~ 170 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDK 170 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHH
Confidence 67899999998643 55555554443345678888886643 23333 4789999998774
No 42
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.81 E-value=5.8 Score=34.53 Aligned_cols=121 Identities=12% Similarity=0.218 Sum_probs=68.0
Q ss_pred CCCCcccccchhhhHHHhhcc--------------CCCCceEeCC-C-------cccccccc-----------------c
Q 048215 171 NKSQLVGVESRVEEIESLLSV--------------ESKDVYALGF-G-------ASVDENAI-----------------P 211 (305)
Q Consensus 171 ~~~~~vG~~~~~~~l~~~L~~--------------~~~~v~ivGi-G-------~~v~e~~~-----------------~ 211 (305)
..++++|.+..++.|.+++.. ....+.++|- | ..+..... .
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~ 92 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 92 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCc
Confidence 346789999888888876542 1223888898 7 11111100 0
Q ss_pred ----chhhhhhhhcCCceeEEeccCCCHHH----------------HHHHHhcCCC--CCCCcEEEEEcCChHHHHh--c
Q 048215 212 ----GNDLNSRRLSCMKVLIVFDDVTCFSQ----------------LESIIGSLDW--LMPVSRTIITTRNKQVLRN--W 267 (305)
Q Consensus 212 ----~~~~l~~~l~~kr~LlVLDdv~~~~~----------------~~~l~~~~~~--~~~gsrIIiTTR~~~v~~~--~ 267 (305)
....+.........+|+||+++.... ...+...+.. ...+-.||.||...+.+.. .
T Consensus 93 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~ 172 (301)
T 3cf0_A 93 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 172 (301)
T ss_dssp CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGG
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHh
Confidence 11112222234568999999974311 1222222211 1245677888876543321 1
Q ss_pred ---CCCceEEcCCCChHHHHHHHHHhh
Q 048215 268 ---GVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 268 ---~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
.....+.++..+.++-.+++..+.
T Consensus 173 r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 173 RPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCccceEEecCCcCHHHHHHHHHHHH
Confidence 235678999999999888887665
No 43
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.90 E-value=5.9 Score=33.49 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=65.3
Q ss_pred CCCCCcccccchhhhHHHhhcc-------------CCCCceEeCC-C-------cccccc----------------cc--
Q 048215 170 DNKSQLVGVESRVEEIESLLSV-------------ESKDVYALGF-G-------ASVDEN----------------AI-- 210 (305)
Q Consensus 170 ~~~~~~vG~~~~~~~l~~~L~~-------------~~~~v~ivGi-G-------~~v~e~----------------~~-- 210 (305)
....+++|.+..++.+.+++.. ....+.++|- | ..+... +.
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 87 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGL 87 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcch
Confidence 3456789999888888776541 1223777888 6 011000 00
Q ss_pred ---cchhhhhhhhcCCceeEEeccCCCHH-----------------HHHHHHhcCCCCC---CCcEEEEEcCChHHHH--
Q 048215 211 ---PGNDLNSRRLSCMKVLIVFDDVTCFS-----------------QLESIIGSLDWLM---PVSRTIITTRNKQVLR-- 265 (305)
Q Consensus 211 ---~~~~~l~~~l~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~~~---~gsrIIiTTR~~~v~~-- 265 (305)
.....+.........+|+||+++... .+..+...+.... ....||.||.....+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~ 167 (268)
T 2r62_A 88 GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPA 167 (268)
T ss_dssp CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGG
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHh
Confidence 01122222223456899999996431 1122222222211 1245777776554322
Q ss_pred ---hcCCCceEEcCCCChHHHHHHHHHhh
Q 048215 266 ---NWGVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 266 ---~~~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
.......+.++..+.++-.+++..++
T Consensus 168 l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 168 LMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp GGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred HcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 11224567888889888888887654
No 44
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.63 E-value=10 Score=32.45 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=64.3
Q ss_pred CCCCcccccchhhhHHHhhcc-------------CCCCceEeCC-C-------cccccccc-----------------cc
Q 048215 171 NKSQLVGVESRVEEIESLLSV-------------ESKDVYALGF-G-------ASVDENAI-----------------PG 212 (305)
Q Consensus 171 ~~~~~vG~~~~~~~l~~~L~~-------------~~~~v~ivGi-G-------~~v~e~~~-----------------~~ 212 (305)
...+++|.+..++.+.+++.. ....+.++|- | ..+..... ..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~ 98 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDG 98 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchH
Confidence 446799999999888877632 1234888898 7 11110000 01
Q ss_pred hhh----hhhhhcCCceeEEeccCCCH-------------HH----HHHHHhcCCCC--CCCcEEEEEcCCh-----HHH
Q 048215 213 NDL----NSRRLSCMKVLIVFDDVTCF-------------SQ----LESIIGSLDWL--MPVSRTIITTRNK-----QVL 264 (305)
Q Consensus 213 ~~~----l~~~l~~kr~LlVLDdv~~~-------------~~----~~~l~~~~~~~--~~gsrIIiTTR~~-----~v~ 264 (305)
... +.........+|+||++... .. +..+.+ ++.. +.+..||.||... .+.
T Consensus 99 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 99 EKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDG-LPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHH-CC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhc-ccccCCCCcEEEEeecCChhhCCHHHH
Confidence 111 11222345689999999642 11 112222 1111 2345677777754 333
Q ss_pred HhcCCCceEEcCCCChHHHHHHHHHhh
Q 048215 265 RNWGVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 265 ~~~~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
.. ....+.++..+.++-..++...+
T Consensus 178 ~R--~~~~i~~~~p~~~~r~~il~~~~ 202 (297)
T 3b9p_A 178 RR--FTKRVYVSLPDEQTRELLLNRLL 202 (297)
T ss_dssp HH--CCEEEECCCCCHHHHHHHHHHHH
T ss_pred hh--CCeEEEeCCcCHHHHHHHHHHHH
Confidence 33 24567888888888888877654
No 45
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.46 E-value=11 Score=33.26 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=41.0
Q ss_pred CCceeEEeccCCCH-------------HHHHHHHhcCC---CCCCCcEEEEEcCCh-----HHHHhcCCCceEEcCCCCh
Q 048215 222 CMKVLIVFDDVTCF-------------SQLESIIGSLD---WLMPVSRTIITTRNK-----QVLRNWGVRKICEMEALEY 280 (305)
Q Consensus 222 ~kr~LlVLDdv~~~-------------~~~~~l~~~~~---~~~~gsrIIiTTR~~-----~v~~~~~~~~~~~v~~L~~ 280 (305)
.+..+|+||+++.. .....+...+. ....+-.||.||... .+.. ..+..+.++..+.
T Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~ 181 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEP 181 (322)
T ss_dssp TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCH
T ss_pred cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCH
Confidence 56789999999754 11122222221 123445566667543 2233 3456788999999
Q ss_pred HHHHHHHHHhh
Q 048215 281 HHALELFSRHA 291 (305)
Q Consensus 281 ~ea~~Lf~~~A 291 (305)
++-.+++..+.
T Consensus 182 ~~r~~il~~~l 192 (322)
T 1xwi_A 182 HARAAMFKLHL 192 (322)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99889888765
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=78.32 E-value=13 Score=32.54 Aligned_cols=117 Identities=11% Similarity=0.098 Sum_probs=69.7
Q ss_pred CCcccccchhhhHHHhhccC------CCCceEeCC-C-------cccccccc-----------cchhhhhhhhc--CCce
Q 048215 173 SQLVGVESRVEEIESLLSVE------SKDVYALGF-G-------ASVDENAI-----------PGNDLNSRRLS--CMKV 225 (305)
Q Consensus 173 ~~~vG~~~~~~~l~~~L~~~------~~~v~ivGi-G-------~~v~e~~~-----------~~~~~l~~~l~--~kr~ 225 (305)
++++|.+..++.+..++... ...+-+.|- | ..+..... .....+...+. .+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGD 108 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCTTC
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccCCC
Confidence 67999999999998888642 124888999 7 11111111 12222333332 3578
Q ss_pred eEEeccCCC--HHHHHHHHhcCCCC------------------CCCcEEEEEcCChH-----HHHhcCCCceEEcCCCCh
Q 048215 226 LIVFDDVTC--FSQLESIIGSLDWL------------------MPVSRTIITTRNKQ-----VLRNWGVRKICEMEALEY 280 (305)
Q Consensus 226 LlVLDdv~~--~~~~~~l~~~~~~~------------------~~gsrIIiTTR~~~-----v~~~~~~~~~~~v~~L~~ 280 (305)
+|+||++.. ......|...+... .++-++|.+|.... +... ....+.+++++.
T Consensus 109 vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R--~~~~i~l~~~~~ 186 (338)
T 3pfi_A 109 ILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDR--FGMQFRLEFYKD 186 (338)
T ss_dssp EEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTT--CSEEEECCCCCH
T ss_pred EEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhh--cCEEeeCCCcCH
Confidence 999999974 34444444332221 12346666665533 2222 246799999999
Q ss_pred HHHHHHHHHhh
Q 048215 281 HHALELFSRHA 291 (305)
Q Consensus 281 ~ea~~Lf~~~A 291 (305)
++...++.+.+
T Consensus 187 ~e~~~il~~~~ 197 (338)
T 3pfi_A 187 SELALILQKAA 197 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 47
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.72 E-value=2.2 Score=39.63 Aligned_cols=73 Identities=7% Similarity=0.121 Sum_probs=47.0
Q ss_pred hcCCceeEEeccCCCH----HHHHHHHhcCCC-CCCCcEEEEEcCC---------hHHHHhcCCCceEEcCCCChHHHHH
Q 048215 220 LSCMKVLIVFDDVTCF----SQLESIIGSLDW-LMPVSRTIITTRN---------KQVLRNWGVRKICEMEALEYHHALE 285 (305)
Q Consensus 220 l~~kr~LlVLDdv~~~----~~~~~l~~~~~~-~~~gsrIIiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~ 285 (305)
+..+.-+|+|||+... ..-+.+...+.. ...|..||+||.+ ..+...+.....+.+++++.++-..
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~ 270 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKS 270 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHH
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHH
Confidence 3336779999999632 222333322211 2357889999876 3344444334578899999999999
Q ss_pred HHHHhhc
Q 048215 286 LFSRHAF 292 (305)
Q Consensus 286 Lf~~~Af 292 (305)
++.+.+-
T Consensus 271 iL~~~~~ 277 (440)
T 2z4s_A 271 IARKMLE 277 (440)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988763
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=74.83 E-value=4.6 Score=37.63 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=64.7
Q ss_pred CCCcccccchh---hhHHHhhccCCC-CceEeCC-C-------cccccccc----------cchhhhh--------hhhc
Q 048215 172 KSQLVGVESRV---EEIESLLSVESK-DVYALGF-G-------ASVDENAI----------PGNDLNS--------RRLS 221 (305)
Q Consensus 172 ~~~~vG~~~~~---~~l~~~L~~~~~-~v~ivGi-G-------~~v~e~~~----------~~~~~l~--------~~l~ 221 (305)
.++++|.+..+ +.+..++..+.- .+-++|- | ..+..... .....++ ....
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~ 104 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNA 104 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhc
Confidence 36789988777 667777765433 3788888 7 11111110 0111111 1123
Q ss_pred CCceeEEeccCCCH--HHHHHHHhcCCCCCCCcEEEEEcCChH------HHHhcCCCceEEcCCCChHHHHHHHHHhhc
Q 048215 222 CMKVLIVFDDVTCF--SQLESIIGSLDWLMPVSRTIITTRNKQ------VLRNWGVRKICEMEALEYHHALELFSRHAF 292 (305)
Q Consensus 222 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~------v~~~~~~~~~~~v~~L~~~ea~~Lf~~~Af 292 (305)
.++.+|+||++... .+.+.|...+.. +.-.-|..||.+.. +... -.++.+++++.++..+++.+.+-
T Consensus 105 ~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR---~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSR---ARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp TCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTT---EEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCc---eeEEeeCCcCHHHHHHHHHHHHH
Confidence 56889999999753 344544444432 22222334555542 2222 24788999999999998887653
No 49
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.46 E-value=6.3 Score=34.75 Aligned_cols=70 Identities=6% Similarity=0.022 Sum_probs=45.3
Q ss_pred CCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChH-HHHhc-CCCceEEcCCCChHHHHHHHHHhh
Q 048215 222 CMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQ-VLRNW-GVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 222 ~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
.+.-++|||++.. ....+.+...+....+++++|++|.+.. +...+ ..-..+++++++.++..+.+...+
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence 3566899999974 3344455544444445788888886632 22111 112678999999999999888765
No 50
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.70 E-value=5.6 Score=33.81 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=42.0
Q ss_pred cCCceeEEeccCCCH------------HHHHHHHhcCCC---CCCCcEEEEEcCChHHHHhcCC----CceEEcCCCCh-
Q 048215 221 SCMKVLIVFDDVTCF------------SQLESIIGSLDW---LMPVSRTIITTRNKQVLRNWGV----RKICEMEALEY- 280 (305)
Q Consensus 221 ~~kr~LlVLDdv~~~------------~~~~~l~~~~~~---~~~gsrIIiTTR~~~v~~~~~~----~~~~~v~~L~~- 280 (305)
..+..+|+||+++.. ..++.|...+.. .+....||.||...+.+..+.. ...+.+++++.
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 356789999998643 223444333332 2334557888888776654211 45688999988
Q ss_pred HHHHHHHHH
Q 048215 281 HHALELFSR 289 (305)
Q Consensus 281 ~ea~~Lf~~ 289 (305)
++-.+++..
T Consensus 202 ~~i~~i~~~ 210 (272)
T 1d2n_A 202 EQLLEALEL 210 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 51
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=72.46 E-value=20 Score=35.38 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=66.5
Q ss_pred CCCcccccchhhhHHHhhccCC-CCceEeCC-C-----------ccc-----ccc------cc-c-------------ch
Q 048215 172 KSQLVGVESRVEEIESLLSVES-KDVYALGF-G-----------ASV-----DEN------AI-P-------------GN 213 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~-~~v~ivGi-G-----------~~v-----~e~------~~-~-------------~~ 213 (305)
.+.++|++..++.+.+.|.... ..+.++|- | ..+ ... +. + ..
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e 264 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHH
Confidence 4679999999999999887643 34888999 7 111 100 00 0 01
Q ss_pred hhhhhh---h-cCCceeEEeccCCCH--------HH---HHHHHhcCCCCCCCcEEEEEcCChHHHHhcCC-------Cc
Q 048215 214 DLNSRR---L-SCMKVLIVFDDVTCF--------SQ---LESIIGSLDWLMPVSRTIITTRNKQVLRNWGV-------RK 271 (305)
Q Consensus 214 ~~l~~~---l-~~kr~LlVLDdv~~~--------~~---~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~-------~~ 271 (305)
..++.. + ..+..+|++|++... .. ...|...+. ..+-++|.+|........... -.
T Consensus 265 ~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~ 342 (758)
T 1r6b_X 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_dssp HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEE
T ss_pred HHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHhCce
Confidence 122222 2 235789999999744 12 222322222 234566666655443221111 12
Q ss_pred eEEcCCCChHHHHHHHHHh
Q 048215 272 ICEMEALEYHHALELFSRH 290 (305)
Q Consensus 272 ~~~v~~L~~~ea~~Lf~~~ 290 (305)
.+.++.++.++..+++...
T Consensus 343 ~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 343 KIDITEPSIEETVQIINGL 361 (758)
T ss_dssp EEECCCCCHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 5889999999988887654
No 52
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=72.00 E-value=7 Score=39.52 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCcccccchhhhHHHhhccCC-CCceEeCC-C
Q 048215 172 KSQLVGVESRVEEIESLLSVES-KDVYALGF-G 202 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~-~~v~ivGi-G 202 (305)
.+.++|++..+..+.+.|.... ..+.++|- |
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG 201 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPG 201 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTT
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCC
Confidence 4679999999999999887643 35889999 7
No 53
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=69.21 E-value=6.1 Score=34.10 Aligned_cols=68 Identities=9% Similarity=0.027 Sum_probs=46.4
Q ss_pred CceeEEeccCC-----------CHHHHHHHHhcCCCCCCCcEEEEEcCChH----------HHHhcCCCceEEcCCCChH
Q 048215 223 MKVLIVFDDVT-----------CFSQLESIIGSLDWLMPVSRTIITTRNKQ----------VLRNWGVRKICEMEALEYH 281 (305)
Q Consensus 223 kr~LlVLDdv~-----------~~~~~~~l~~~~~~~~~gsrIIiTTR~~~----------v~~~~~~~~~~~v~~L~~~ 281 (305)
+.-+|+||+++ .......|...+.....+..||.||.... +...+ ...+.+++++.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~ 207 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDE 207 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHH
Confidence 34689999997 44445555555544556678888886432 22222 367899999999
Q ss_pred HHHHHHHHhhc
Q 048215 282 HALELFSRHAF 292 (305)
Q Consensus 282 ea~~Lf~~~Af 292 (305)
+-.+++..++-
T Consensus 208 ~~~~il~~~l~ 218 (309)
T 3syl_A 208 ELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877653
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=68.98 E-value=10 Score=35.77 Aligned_cols=121 Identities=10% Similarity=0.145 Sum_probs=69.0
Q ss_pred CCCcccccchhhhHHHhhcc--------------CCCCceEeCC-C-------cccccccc-------------------
Q 048215 172 KSQLVGVESRVEEIESLLSV--------------ESKDVYALGF-G-------ASVDENAI------------------- 210 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~--------------~~~~v~ivGi-G-------~~v~e~~~------------------- 210 (305)
..+++|.+..++.|.+++.. ....+-+.|- | ..+.....
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~ 282 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchh
Confidence 35689999999999887642 1223888999 7 11111111
Q ss_pred --cchhhhhhhhcCCceeEEeccCCCH-------------HHHHHHHhcCCC--CCCCcEEEEEcCChHHHH-----hcC
Q 048215 211 --PGNDLNSRRLSCMKVLIVFDDVTCF-------------SQLESIIGSLDW--LMPVSRTIITTRNKQVLR-----NWG 268 (305)
Q Consensus 211 --~~~~~l~~~l~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~--~~~gsrIIiTTR~~~v~~-----~~~ 268 (305)
.....+.....++..+|+||+++.. .....|...+.. ...+-+||.||...+-+. ...
T Consensus 283 ~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gR 362 (489)
T 3hu3_A 283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (489)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTS
T ss_pred HHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCc
Confidence 0112223333456789999999411 112222222221 223456676776553221 112
Q ss_pred CCceEEcCCCChHHHHHHHHHhhc
Q 048215 269 VRKICEMEALEYHHALELFSRHAF 292 (305)
Q Consensus 269 ~~~~~~v~~L~~~ea~~Lf~~~Af 292 (305)
....+.++..+.++-.+++..++-
T Consensus 363 f~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 363 FDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHTT
T ss_pred CceEEEeCCCCHHHHHHHHHHHHh
Confidence 345788999999999999988764
No 55
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=67.39 E-value=15 Score=32.27 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=49.2
Q ss_pred cCCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChH-HHHhc-CCCceEEcCCCChHHHHHHHHHhh
Q 048215 221 SCMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQ-VLRNW-GVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 221 ~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
.+++-++|+|+++. ....+.|...+....+++.+|++|.+.+ +.... ..-..+++++++.++..+.+...+
T Consensus 106 ~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence 35677889999974 4556777776766566788887776653 32221 112578999999999988887664
No 56
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=64.08 E-value=6.2 Score=34.69 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=50.8
Q ss_pred CCceeEEeccCC--CHHHHHHHHhcCCCCCCCcEEEEEcCCh-HHHHhcCCCceEEcCCCChHHHHHHHHHhh
Q 048215 222 CMKVLIVFDDVT--CFSQLESIIGSLDWLMPVSRTIITTRNK-QVLRNWGVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 222 ~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
+++-++|+|++. +....+.|...+....+.+.+|++|.+. .+....... .+++++++.++..+.+.+.+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 456788999997 4566777777776666788888777554 444444334 89999999999999887765
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=59.19 E-value=53 Score=30.40 Aligned_cols=113 Identities=10% Similarity=0.158 Sum_probs=61.5
Q ss_pred CCCcccccchhhhHHHhhccCC-CCceEeCC-C-----------ccccc-----------------------ccccc-hh
Q 048215 172 KSQLVGVESRVEEIESLLSVES-KDVYALGF-G-----------ASVDE-----------------------NAIPG-ND 214 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~-~~v~ivGi-G-----------~~v~e-----------------------~~~~~-~~ 214 (305)
.+.++|++..++.+.+.|.... .++-++|- | ..+.. .+.+. ..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~ 258 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHH
Confidence 3579999999999999987543 34889999 7 11100 00011 11
Q ss_pred hhhhhhcCCceeEEeccCCCHHHHHHHHhcCCCCCCCcEEEEEcCChH----------HHHhcCCCceEEcCCCChHHHH
Q 048215 215 LNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQ----------VLRNWGVRKICEMEALEYHHAL 284 (305)
Q Consensus 215 ~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~----------v~~~~~~~~~~~v~~L~~~ea~ 284 (305)
.+...-.....+|++| ...+....|...+. ...-++|.+|.... +...+ ..+.++.++.++..
T Consensus 259 ~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf---~~i~v~~p~~e~~~ 331 (468)
T 3pxg_A 259 VMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRF---QPIQVDQPSVDESI 331 (468)
T ss_dssp HHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSE---EEEECCCCCHHHHH
T ss_pred HHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhC---ccceeCCCCHHHHH
Confidence 1222223457888999 22222333333322 12345565554443 11122 36889999999999
Q ss_pred HHHHHhh
Q 048215 285 ELFSRHA 291 (305)
Q Consensus 285 ~Lf~~~A 291 (305)
+++...+
T Consensus 332 ~iL~~~~ 338 (468)
T 3pxg_A 332 QILQGLR 338 (468)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9998654
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=59.02 E-value=45 Score=32.92 Aligned_cols=112 Identities=10% Similarity=0.155 Sum_probs=62.9
Q ss_pred CCCcccccchhhhHHHhhccCC-CCceEeCC-C-----------ccc-----c------------------ccccc-chh
Q 048215 172 KSQLVGVESRVEEIESLLSVES-KDVYALGF-G-----------ASV-----D------------------ENAIP-GND 214 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~-~~v~ivGi-G-----------~~v-----~------------------e~~~~-~~~ 214 (305)
.+.++|++..++.+.+.|.... .++-++|- | ..+ - ..+.. ...
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~ 258 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHH
Confidence 4679999999999999987543 34889999 7 111 0 00001 112
Q ss_pred hhhhhhcCCceeEEeccCCCHHHHHHHHhcCCCCCCCcEEEEEcCChH----------HHHhcCCCceEEcCCCChHHHH
Q 048215 215 LNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQ----------VLRNWGVRKICEMEALEYHHAL 284 (305)
Q Consensus 215 ~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~----------v~~~~~~~~~~~v~~L~~~ea~ 284 (305)
.+......++.+|++| ...+....|...+. ...-++|.||.... +...+ ..+.++.++.++..
T Consensus 259 ~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf---~~i~v~~p~~~~~~ 331 (758)
T 3pxi_A 259 VMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRF---QPIQVDQPSVDESI 331 (758)
T ss_dssp HHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSE---EEEECCCCCHHHHH
T ss_pred HHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhC---cEEEeCCCCHHHHH
Confidence 2222233567899999 22223333333332 22345666665443 12222 46889999999999
Q ss_pred HHHHHh
Q 048215 285 ELFSRH 290 (305)
Q Consensus 285 ~Lf~~~ 290 (305)
+++...
T Consensus 332 ~il~~~ 337 (758)
T 3pxi_A 332 QILQGL 337 (758)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999854
No 59
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.43 E-value=38 Score=28.14 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=25.6
Q ss_pred CCcEEEEEcCChHHHH-hc----CCCceEEcCCCChHHHHHHHHHhh
Q 048215 250 PVSRTIITTRNKQVLR-NW----GVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 250 ~gsrIIiTTR~~~v~~-~~----~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
.+-.||.||...+.+. .. .....+.++..+.++-.+++..++
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 3456777776554321 11 124567788888888777776654
No 60
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=53.94 E-value=31 Score=32.30 Aligned_cols=73 Identities=10% Similarity=0.161 Sum_probs=43.4
Q ss_pred hhcCCceeEEeccCCCH----------------HHHHHHHhcCCCC--CCCcEEEEEcCChHHHHh--c---CCCceEEc
Q 048215 219 RLSCMKVLIVFDDVTCF----------------SQLESIIGSLDWL--MPVSRTIITTRNKQVLRN--W---GVRKICEM 275 (305)
Q Consensus 219 ~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~--~~gsrIIiTTR~~~v~~~--~---~~~~~~~v 275 (305)
.......+|+||+++.. ..+..+...+..+ ..+-.||.||...+.+.. . ..+..+.+
T Consensus 104 A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i 183 (476)
T 2ce7_A 104 AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183 (476)
T ss_dssp HHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeec
Confidence 33456789999999531 1233333222212 245677888877655431 1 12457888
Q ss_pred CCCChHHHHHHHHHhh
Q 048215 276 EALEYHHALELFSRHA 291 (305)
Q Consensus 276 ~~L~~~ea~~Lf~~~A 291 (305)
+..+.++-.+++..++
T Consensus 184 ~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 184 DPPDMLGRKKILEIHT 199 (476)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8888877777777665
No 61
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=50.66 E-value=11 Score=32.77 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=42.6
Q ss_pred ceeEEeccCCCHH----HHHHHHhcCCC-CCCCcEEEEEcCC---------hHHHHhcCCCceEEcCCCChHHHHHHHHH
Q 048215 224 KVLIVFDDVTCFS----QLESIIGSLDW-LMPVSRTIITTRN---------KQVLRNWGVRKICEMEALEYHHALELFSR 289 (305)
Q Consensus 224 r~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIIiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~Lf~~ 289 (305)
.-+|+|||+.... ..+.+...+.. ...|.+||+||.+ ..+...+.....+++++ +.++-.+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 6789999996432 22223222211 1346678888753 23333443346789999 99999999988
Q ss_pred hhc
Q 048215 290 HAF 292 (305)
Q Consensus 290 ~Af 292 (305)
.+-
T Consensus 178 ~~~ 180 (324)
T 1l8q_A 178 KLK 180 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 62
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=50.24 E-value=36 Score=26.78 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=47.3
Q ss_pred chHHHHHHHHhcCCceeEEeC--CCCCCCcchHHHHHHHHhcCcEEEEeec---CcccchhhHHHHHHHHHH
Q 048215 22 DFTSHLYSALSRQNIQTFIDD--QLNRGYEISESLVKAIKASAISVIIFSE---DYASSRWCLDELAEILEC 88 (305)
Q Consensus 22 ~f~~~L~~~L~~~gi~~f~d~--~~~~g~~~~~~i~~ai~~s~~~ivv~S~---~y~~S~~cl~EL~~i~e~ 88 (305)
.+...+.++|+..|..+|.-. .......|...-.++|++|++.|+++.| .+.. .-..-|+-.....
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D-~GTafEiGyA~Al 97 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPD-CGTAFEVGCAAAL 97 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCC-CcHHHHHHHHHHC
Confidence 578899999999999888732 2223445555568999999999999985 4444 4466777655543
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.16 E-value=34 Score=33.83 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=38.4
Q ss_pred ceeEEeccCCC--HHHHHHHHhcCCC-----------CCCCcEEEEEcCC-----------------hHHHHhcCCCceE
Q 048215 224 KVLIVFDDVTC--FSQLESIIGSLDW-----------LMPVSRTIITTRN-----------------KQVLRNWGVRKIC 273 (305)
Q Consensus 224 r~LlVLDdv~~--~~~~~~l~~~~~~-----------~~~gsrIIiTTR~-----------------~~v~~~~~~~~~~ 273 (305)
.-+|+||++.. ......|...+.. .....+||.||.. +.+... .+.++
T Consensus 580 ~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i 657 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINR--IDEII 657 (758)
T ss_dssp SSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTT--SSEEE
T ss_pred CeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhh--CCeEE
Confidence 45889999973 3444444433221 1235688888872 122222 24588
Q ss_pred EcCCCChHHHHHHHHHh
Q 048215 274 EMEALEYHHALELFSRH 290 (305)
Q Consensus 274 ~v~~L~~~ea~~Lf~~~ 290 (305)
.+++|+.++-.+++...
T Consensus 658 ~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp ECC--CHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHH
Confidence 99999999888877654
No 64
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=46.73 E-value=22 Score=27.34 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=40.3
Q ss_pred EEecCCcCcCCcchHHHHHHHHhcCCceeEEeC-----------------CCCCC-C-cchHHHHHHHHhcCcEEEEeec
Q 048215 10 VFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDD-----------------QLNRG-Y-EISESLVKAIKASAISVIIFSE 70 (305)
Q Consensus 10 VFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-----------------~~~~g-~-~~~~~i~~ai~~s~~~ivv~S~ 70 (305)
||||.++.| +.-+-.+.+.|...|++++--. +...| + .-.|.|...|.+-++.+||..+
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998877 3334567778888888876321 11111 1 0015688889999999999887
Q ss_pred Cc
Q 048215 71 DY 72 (305)
Q Consensus 71 ~y 72 (305)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 65
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=45.85 E-value=69 Score=24.28 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=43.2
Q ss_pred CCCCCCcccE-EecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEee
Q 048215 1 SRSSTKKYDV-FVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFS 69 (305)
Q Consensus 1 s~s~~~~~dV-Fis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S 69 (305)
|+|.....+| .|.-+.. ...++..+...|...|+.+=.|. ...++.+...|.+|-.+---.++|+.
T Consensus 2 ~~~~~~P~Qv~IlpVs~~--~~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVVG 68 (130)
T 1v95_A 2 SSGSSGPVDCSVIVVNKQ--TKDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVIT 68 (130)
T ss_dssp CCCCCCCCTEEEEESSSG--GGHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCCCCCCeEEEEEeCcc--hHHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEEe
Confidence 4455555565 4444433 36799999999999999986653 11278888888887554444555555
No 66
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=45.56 E-value=63 Score=28.13 Aligned_cols=71 Identities=7% Similarity=-0.069 Sum_probs=47.6
Q ss_pred hcCCceeEEeccCCC---HHHHHHHHhcCCCCCCCcEEEEEcCC-------hHHHHhcC-CCceEEcCCCChHHHHHHHH
Q 048215 220 LSCMKVLIVFDDVTC---FSQLESIIGSLDWLMPVSRTIITTRN-------KQVLRNWG-VRKICEMEALEYHHALELFS 288 (305)
Q Consensus 220 l~~kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gsrIIiTTR~-------~~v~~~~~-~~~~~~v~~L~~~ea~~Lf~ 288 (305)
+.+.+-++|+|++.. ...++.|...+....+++.+|++|-. ..+...+. ....++..+++.++......
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 446667788898854 46778887777766678888777643 34555432 23578888888877776555
Q ss_pred Hh
Q 048215 289 RH 290 (305)
Q Consensus 289 ~~ 290 (305)
+.
T Consensus 153 ~~ 154 (343)
T 1jr3_D 153 AR 154 (343)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=44.66 E-value=36 Score=28.86 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=16.5
Q ss_pred ceEEcCCCChHHHHHHHHH
Q 048215 271 KICEMEALEYHHALELFSR 289 (305)
Q Consensus 271 ~~~~v~~L~~~ea~~Lf~~ 289 (305)
..+.+++++.++-.+++.+
T Consensus 195 ~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 195 IRVELTALSAADFERILTE 213 (310)
T ss_dssp EEEECCCCCHHHHHHHHHS
T ss_pred ceEEcCCcCHHHHHHHHHh
Confidence 5689999999998888874
No 68
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=42.90 E-value=71 Score=25.00 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=51.8
Q ss_pred CCCCcccEEecCCcCcC----CcchHHHHHHHHhcCCceeEEeCCC-----CCCC-------cchHHHHHHHHhcCcEEE
Q 048215 3 SSTKKYDVFVSFRGEDT----LDDFTSHLYSALSRQNIQTFIDDQL-----NRGY-------EISESLVKAIKASAISVI 66 (305)
Q Consensus 3 s~~~~~dVFis~~~~D~----~~~f~~~L~~~L~~~gi~~f~d~~~-----~~g~-------~~~~~i~~ai~~s~~~iv 66 (305)
+.+.+..|||+ |+.. .......+.+.|++.| .++.+... ..|. .+-..-.++|++|++.|+
T Consensus 7 ~~~~~~kVYLA--Gp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva 83 (165)
T 2khz_A 7 GEQAPCSVYFC--GSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVA 83 (165)
T ss_dssp SSCCCCEEEEE--CCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCCeEEEEE--CCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEE
Confidence 34556789997 2222 1214478899999999 88654411 1221 122344588999999999
Q ss_pred EeecCcccchhhHHHHHHHHHH
Q 048215 67 IFSEDYASSRWCLDELAEILEC 88 (305)
Q Consensus 67 v~S~~y~~S~~cl~EL~~i~e~ 88 (305)
++. ..+.-+.-|+-.....
T Consensus 84 ~~~---~~d~Gt~~EiGyA~al 102 (165)
T 2khz_A 84 EVT---QPSLGVGYELGRAVAL 102 (165)
T ss_dssp ECS---SCCHHHHHHHHHHHHT
T ss_pred ECC---CCCCCHHHHHHHHHHC
Confidence 997 4567788888766554
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=36.40 E-value=25 Score=31.68 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=30.1
Q ss_pred eeEEeccCCC---HHHHHHHHhcCCCCCCCcEEEEEcCChHHHHhcCCCceEEc
Q 048215 225 VLIVFDDVTC---FSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEM 275 (305)
Q Consensus 225 ~LlVLDdv~~---~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v 275 (305)
-+|+||++.+ ......+...+.....|..||++|.+.+++.. ++.++.|
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 6899999873 33333333322222347889999999988864 3444444
No 70
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=36.22 E-value=84 Score=24.47 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=49.6
Q ss_pred cEEec--CCcCcCCcchHHHHHHHHhcCCceeEEeC----CC-CCCC-------cchHHHHHHHHhcCcEEEEeecCccc
Q 048215 9 DVFVS--FRGEDTLDDFTSHLYSALSRQNIQTFIDD----QL-NRGY-------EISESLVKAIKASAISVIIFSEDYAS 74 (305)
Q Consensus 9 dVFis--~~~~D~~~~f~~~L~~~L~~~gi~~f~d~----~~-~~g~-------~~~~~i~~ai~~s~~~ivv~S~~y~~ 74 (305)
.|||+ +++.+....+...+.+.|++.| .+|... .+ ..|+ .+-..-.++|++|++.|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46664 4453334457799999999999 676532 11 1222 255566788999999999998 44
Q ss_pred chhhHHHHHHHHHH
Q 048215 75 SRWCLDELAEILEC 88 (305)
Q Consensus 75 S~~cl~EL~~i~e~ 88 (305)
|.-..-|+-.....
T Consensus 80 d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 80 SLGVGYELGRAVAL 93 (152)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 66667787766654
No 71
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=35.47 E-value=13 Score=30.47 Aligned_cols=49 Identities=27% Similarity=0.293 Sum_probs=28.3
Q ss_pred hhhhhhhhcC-CceeEEeccCCCH-----HHHHHHHhcCCCCCCCcEEEEEcCCh
Q 048215 213 NDLNSRRLSC-MKVLIVFDDVTCF-----SQLESIIGSLDWLMPVSRTIITTRNK 261 (305)
Q Consensus 213 ~~~l~~~l~~-kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gsrIIiTTR~~ 261 (305)
...+++.+.+ +-=|||||++.-. -..+.+...+......--||||+|+.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4445556644 4568999998421 11222332233334567899999985
No 72
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=31.54 E-value=63 Score=23.54 Aligned_cols=44 Identities=7% Similarity=0.114 Sum_probs=33.7
Q ss_pred HHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecCccc
Q 048215 28 YSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYAS 74 (305)
Q Consensus 28 ~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~ 74 (305)
...|+-.|+.+|.- ...+++.+.+.+.+++.+++|++++++.+.
T Consensus 15 v~GFrLaGi~~~~v---~~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 15 AQGFRLAGLEGYGA---SSAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHTTSEEEEC---SSHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHcCCeEEEe---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 45667789998863 233566667777788889999999999998
No 73
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=31.50 E-value=2.4e+02 Score=26.29 Aligned_cols=68 Identities=12% Similarity=0.226 Sum_probs=41.0
Q ss_pred ceeEEeccCCCH----------------HHHHHHHhcCCCC--CCCcEEEEEcCChHHHHhc-----CCCceEEcCCCCh
Q 048215 224 KVLIVFDDVTCF----------------SQLESIIGSLDWL--MPVSRTIITTRNKQVLRNW-----GVRKICEMEALEY 280 (305)
Q Consensus 224 r~LlVLDdv~~~----------------~~~~~l~~~~~~~--~~gsrIIiTTR~~~v~~~~-----~~~~~~~v~~L~~ 280 (305)
..++++|+++.. ..+..+...+..+ ..+..+|.||...+++... ..+..+.++..+.
T Consensus 124 p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~ 203 (499)
T 2dhr_A 124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 203 (499)
T ss_dssp SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCH
T ss_pred CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCH
Confidence 479999999521 1123333333222 2344667777777664421 1245788998898
Q ss_pred HHHHHHHHHhh
Q 048215 281 HHALELFSRHA 291 (305)
Q Consensus 281 ~ea~~Lf~~~A 291 (305)
++-.+++..++
T Consensus 204 ~~R~~IL~~~~ 214 (499)
T 2dhr_A 204 KGREQILRIHA 214 (499)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 88888887665
No 74
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=31.39 E-value=1e+02 Score=26.80 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=41.5
Q ss_pred ceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCC-----------------hHHHHhcCCCceEEcCCCChHHHH
Q 048215 224 KVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRN-----------------KQVLRNWGVRKICEMEALEYHHAL 284 (305)
Q Consensus 224 r~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~-----------------~~v~~~~~~~~~~~v~~L~~~ea~ 284 (305)
..+|+||++.. .+....|...+...... .+|++|.. ..+...+ ..+.+++++.++..
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~ 265 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTK 265 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHH
Confidence 35999999974 35566666555443333 34444431 3444444 34799999999999
Q ss_pred HHHHHhhc
Q 048215 285 ELFSRHAF 292 (305)
Q Consensus 285 ~Lf~~~Af 292 (305)
+++...+-
T Consensus 266 ~il~~~~~ 273 (368)
T 3uk6_A 266 QILRIRCE 273 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.07 E-value=96 Score=26.88 Aligned_cols=69 Identities=7% Similarity=0.032 Sum_probs=42.6
Q ss_pred CceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChH-HHHhc-CCCceEEcCCCChHHHHHHHHHhh
Q 048215 223 MKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQ-VLRNW-GVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 223 kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
.+-++|+|++.. ....+.|...+......+++|++|.... +.... ..-..+.+.+++.++..+.+...+
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHH
Confidence 467889999863 4455556555544456677777775432 11111 112368889999988887776544
No 76
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=27.78 E-value=27 Score=26.76 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=24.7
Q ss_pred CCCcccccchhhhHHHhhccCCC-CceEeCC-C
Q 048215 172 KSQLVGVESRVEEIESLLSVESK-DVYALGF-G 202 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~~-~v~ivGi-G 202 (305)
..+++|++..++.+.+.+..... .+-++|- |
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G 53 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPG 53 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGG
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCC
Confidence 36799999999999998876433 3888899 7
No 77
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} SCOP: c.80.1.2 PDB: 3ifs_A*
Probab=26.44 E-value=75 Score=29.46 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=11.5
Q ss_pred HhhccCCCCceEeCC-Cccc
Q 048215 187 SLLSVESKDVYALGF-GASV 205 (305)
Q Consensus 187 ~~L~~~~~~v~ivGi-G~~v 205 (305)
+.+..+.+.|-+||| |+..
T Consensus 70 ~~vr~~~~~vV~IGIGGS~L 89 (446)
T 3ff1_A 70 KRIKENSDVLVVIGIGGSYL 89 (446)
T ss_dssp HHHHHHCSEEEEECCGGGTH
T ss_pred HHHhcCCCEEEEEecchhHH
Confidence 334434455889999 8433
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=25.63 E-value=1.3e+02 Score=23.54 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=37.0
Q ss_pred hcCCceeEEeccCC-----CHHHHHHHHhcCCCCCCCcEEEEEc---CChHHHHhcCC---CceEEcCCCChHHHHH
Q 048215 220 LSCMKVLIVFDDVT-----CFSQLESIIGSLDWLMPVSRTIITT---RNKQVLRNWGV---RKICEMEALEYHHALE 285 (305)
Q Consensus 220 l~~kr~LlVLDdv~-----~~~~~~~l~~~~~~~~~gsrIIiTT---R~~~v~~~~~~---~~~~~v~~L~~~ea~~ 285 (305)
+..+.-+|+||.+. +....+.+...+.. .+..+|++| .+...+..+.. ..++++...+.++...
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 56667799999952 22333444443433 355466666 35555554322 3588888888766544
No 79
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.16 E-value=3.1e+02 Score=24.84 Aligned_cols=121 Identities=16% Similarity=0.274 Sum_probs=68.9
Q ss_pred CCCCcccccchhhhHHHhhcc--------------CCCCceEeCC-C-------ccccccc-------------c----c
Q 048215 171 NKSQLVGVESRVEEIESLLSV--------------ESKDVYALGF-G-------ASVDENA-------------I----P 211 (305)
Q Consensus 171 ~~~~~vG~~~~~~~l~~~L~~--------------~~~~v~ivGi-G-------~~v~e~~-------------~----~ 211 (305)
.-+++.|.+..+++|.+.+.. ...++-+.|- | ..+.... . +
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccch
Confidence 346788999999888765432 1234888999 7 1111110 0 1
Q ss_pred chhhhhhh----hcCCceeEEeccCCCHH----------------HHHHHHhcCCCCC--CCcEEEEEcCChHHHH----
Q 048215 212 GNDLNSRR----LSCMKVLIVFDDVTCFS----------------QLESIIGSLDWLM--PVSRTIITTRNKQVLR---- 265 (305)
Q Consensus 212 ~~~~l~~~----l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~gsrIIiTTR~~~v~~---- 265 (305)
....++.. -....++|.+|+++... ....+...+..+. .+-.||.||-..+.+.
T Consensus 226 se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAll 305 (405)
T 4b4t_J 226 GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALL 305 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHc
Confidence 11222222 23568999999997320 1222322222222 3445677776654432
Q ss_pred -hcCCCceEEcCCCChHHHHHHHHHhh
Q 048215 266 -NWGVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 266 -~~~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
.-..+..+.++..+.++-.++|..+.
T Consensus 306 RpGRfD~~I~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 306 RPGRIDRKIEFPPPSVAARAEILRIHS 332 (405)
T ss_dssp STTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence 11347789999999998889987765
No 80
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=25.04 E-value=17 Score=25.55 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=18.5
Q ss_pred EecCCcCcCCcchHHHHHHHHhcCCc
Q 048215 11 FVSFRGEDTLDDFTSHLYSALSRQNI 36 (305)
Q Consensus 11 Fis~~~~D~~~~f~~~L~~~L~~~gi 36 (305)
|.|||......-|+..|++.|++.+-
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~~ 46 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYAC 46 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHTT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhCC
Confidence 56677665544499999999986543
No 81
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=24.59 E-value=62 Score=25.99 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=34.4
Q ss_pred EEecCCcCcC--CcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHH
Q 048215 10 VFVSFRGEDT--LDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIK 59 (305)
Q Consensus 10 VFis~~~~D~--~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~ 59 (305)
.||.|-|.|. +.+-+..|.+.|..+|+.+..-. .+.|.++.+.+.+.+.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr-eP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR-EPGGTETGEKIRKILL 51 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCCcHHHHHHHHhh
Confidence 3899999997 47788999999999999764422 2345555555555443
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=23.63 E-value=30 Score=26.92 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=21.1
Q ss_pred CceeEEeccCC--CHHHH--HHHHhcCCC-CCCCcEEEEEcCCh
Q 048215 223 MKVLIVFDDVT--CFSQL--ESIIGSLDW-LMPVSRTIITTRNK 261 (305)
Q Consensus 223 kr~LlVLDdv~--~~~~~--~~l~~~~~~-~~~gsrIIiTTR~~ 261 (305)
+.-+|||||++ ....| +.+...+.. ...|..+|+||...
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45689999997 22222 122221111 12577888888543
No 83
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=23.59 E-value=1e+02 Score=25.45 Aligned_cols=62 Identities=10% Similarity=0.193 Sum_probs=33.8
Q ss_pred ceeEEeccCCC--HHHHHHHHhcCCCC-----------CCCcEEEEEcCCh------------HHHHhcCCCceEEcCCC
Q 048215 224 KVLIVFDDVTC--FSQLESIIGSLDWL-----------MPVSRTIITTRNK------------QVLRNWGVRKICEMEAL 278 (305)
Q Consensus 224 r~LlVLDdv~~--~~~~~~l~~~~~~~-----------~~gsrIIiTTR~~------------~v~~~~~~~~~~~v~~L 278 (305)
.-+|+||++.. ......|...+... ....+||.||... .+...+. ...+.+++|
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L 179 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPL 179 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCG
T ss_pred CcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCCh
Confidence 45899999974 33334443322211 1346788887652 2222222 235789999
Q ss_pred Ch--HHHHHH
Q 048215 279 EY--HHALEL 286 (305)
Q Consensus 279 ~~--~ea~~L 286 (305)
.+ ++-..|
T Consensus 180 ~~R~~di~~l 189 (265)
T 2bjv_A 180 RERESDIMLM 189 (265)
T ss_dssp GGCHHHHHHH
T ss_pred hhhhHHHHHH
Confidence 87 444444
No 84
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=23.54 E-value=25 Score=25.49 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCcEEEEeecCccc
Q 048215 52 ESLVKAIKASAISVIIFSEDYAS 74 (305)
Q Consensus 52 ~~i~~ai~~s~~~ivv~S~~y~~ 74 (305)
+..+.++.....+++|||..|--
T Consensus 42 ~~emg~lsG~~rsLvvFSsgYrP 64 (102)
T 2pp6_A 42 LAELGPVEGNGKNVVVFSGNVIP 64 (102)
T ss_dssp TC--------CEEEEECCSSCCC
T ss_pred HHHhCCccCCceEEEEecCCccc
Confidence 45677899999999999999965
No 85
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A
Probab=22.71 E-value=1.1e+02 Score=28.34 Aligned_cols=64 Identities=9% Similarity=0.191 Sum_probs=29.4
Q ss_pred CCCCceEeCC-Ccccccccccchhhhhhhh-----cCCceeEEeccCCCHHHHHHHHhcCCCCCCCcEEEEEcCC
Q 048215 192 ESKDVYALGF-GASVDENAIPGNDLNSRRL-----SCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRN 260 (305)
Q Consensus 192 ~~~~v~ivGi-G~~v~e~~~~~~~~l~~~l-----~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~ 260 (305)
.-++|-+||| |+.+.-.. ..+.|+... .+.+.+.|+|+|+- ..+..+...+ ....+-+||.|..
T Consensus 71 ~~~~VV~IGIGGS~LG~~~--v~~aL~~~~~~~~~~~~~~~fv~~NvDp-~~i~~~l~~l--~~~~TlviviSKS 140 (445)
T 1b0z_A 71 HSDALVVIGIGGSYLGARA--AIEALSHTFHNQMNDTTQIYFAGQNISS-TYISHLLDVL--EGKDLSINVISKS 140 (445)
T ss_dssp HCSEEEEECCGGGTHHHHH--HHHHHSCTTGGGSTTSCEEEEESSSCCH-HHHHHHHHHH--TTCCEEEEEECSS
T ss_pred cCCEEEEEecChhHHHHHH--HHHHHhhhcccccccCCceEEEeCCCCH-HHHHHHHhhC--CcCcEEEEEEeCC
Confidence 3456899999 84332110 111122221 12456777788853 3333322222 1234555555544
No 86
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=22.55 E-value=49 Score=22.34 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCceeEEeC-CCC---CCCcchHHHHHHHHhc
Q 048215 24 TSHLYSALSRQNIQTFIDD-QLN---RGYEISESLVKAIKAS 61 (305)
Q Consensus 24 ~~~L~~~L~~~gi~~f~d~-~~~---~g~~~~~~i~~ai~~s 61 (305)
+..|...|..+||..|.|+ .+. +-..+++++...+.+.
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~ 48 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGA 48 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHH
Confidence 3467788999999999988 442 2235777877777654
No 87
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.22 E-value=2e+02 Score=26.47 Aligned_cols=122 Identities=17% Similarity=0.284 Sum_probs=68.8
Q ss_pred CCCCcccccchhhhHHHhhcc--------------CCCCceEeCC-C-------cccccc-------------cc----c
Q 048215 171 NKSQLVGVESRVEEIESLLSV--------------ESKDVYALGF-G-------ASVDEN-------------AI----P 211 (305)
Q Consensus 171 ~~~~~vG~~~~~~~l~~~L~~--------------~~~~v~ivGi-G-------~~v~e~-------------~~----~ 211 (305)
.-+++.|.+..+++|.+.+.. ...++-++|- | ..+... .. +
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSH
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchH
Confidence 356788999998888775432 1234888999 7 111111 00 1
Q ss_pred chhhhhh----hhcCCceeEEeccCCCH----------------HHHHHHHhcCCCC--CCCcEEEEEcCChHHHHhc--
Q 048215 212 GNDLNSR----RLSCMKVLIVFDDVTCF----------------SQLESIIGSLDWL--MPVSRTIITTRNKQVLRNW-- 267 (305)
Q Consensus 212 ~~~~l~~----~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~--~~gsrIIiTTR~~~v~~~~-- 267 (305)
....++. .-....++|.+|+++.. ..+..+...+..+ ..+-.||.||-..+.+...
T Consensus 259 se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAll 338 (437)
T 4b4t_L 259 SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALL 338 (437)
T ss_dssp HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTT
T ss_pred HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHh
Confidence 1112222 22356899999999721 0122222222212 2345788888776655421
Q ss_pred --C-CCceEEcCCCChHHHHHHHHHhhc
Q 048215 268 --G-VRKICEMEALEYHHALELFSRHAF 292 (305)
Q Consensus 268 --~-~~~~~~v~~L~~~ea~~Lf~~~Af 292 (305)
| .+..+.++..+.++-.++|..+.=
T Consensus 339 RpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (437)
T 4b4t_L 339 RPGRLDRKVEIPLPNEAGRLEIFKIHTA 366 (437)
T ss_dssp STTSEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred CCCccceeeecCCcCHHHHHHHHHHHhc
Confidence 1 255778888888888888876653
No 88
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=21.89 E-value=1.2e+02 Score=23.75 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=46.1
Q ss_pred cchHHHHHHHHhcC--CceeEEe--CCC---CCC----CcchHHHHHHHHhcCcEEEEeecCcccchhhHHHHHHHHHHh
Q 048215 21 DDFTSHLYSALSRQ--NIQTFID--DQL---NRG----YEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECK 89 (305)
Q Consensus 21 ~~f~~~L~~~L~~~--gi~~f~d--~~~---~~g----~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~EL~~i~e~~ 89 (305)
..+...+.++|+.+ |+.+|.- +.. ..+ ..+-..-.++|++|++.|.++. ....+..+.-|+-......
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG 97 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence 34778899999875 8888762 211 112 2344455667999999999995 3345678888987776644
No 89
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=21.60 E-value=58 Score=16.32 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHH
Q 048215 119 SEKLQTWRKGLRE 131 (305)
Q Consensus 119 ~ekv~~Wr~aL~e 131 (305)
.+.|++|.+.|+-
T Consensus 7 vDSV~rWmeDLr~ 19 (22)
T 3ro3_B 7 VDSVQRWMEDLKL 19 (26)
T ss_pred hHHHHHHHHHHHh
Confidence 3569999998864
No 90
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=20.80 E-value=21 Score=25.52 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=16.5
Q ss_pred EecCCcCcCCcchHHHHHHHHhcCC
Q 048215 11 FVSFRGEDTLDDFTSHLYSALSRQN 35 (305)
Q Consensus 11 Fis~~~~D~~~~f~~~L~~~L~~~g 35 (305)
|.|||..+...-|+..|++.|.+.|
T Consensus 23 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 23 YYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEeeecCCCCCeeHHHHHHHHHHhC
Confidence 4555555544448888888887654
No 91
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=20.51 E-value=45 Score=24.68 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=41.6
Q ss_pred HHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhHHHHHHHHHHhhccceE--EEEeCCCCc
Q 048215 29 SALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECKKEHAQI--YVRNQTGSF 104 (305)
Q Consensus 29 ~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~EL~~i~e~~~~~~~v--~Vr~q~g~f 104 (305)
..|+-.|+.+|.- ..-+++.+.+.+.+++ .++||+++++.+.. +-+++.. ++ +...+. .+-...|++
T Consensus 15 ~GFrLaGie~~~v---~~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~-~~--~~~~P~IveIPs~~g~~ 83 (115)
T 3aon_B 15 SPFRLFGFDVQHG---TTKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER-YK--GQLTPAIILIPSHQGTL 83 (115)
T ss_dssp GGGGGGTCEEECC---CSHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH-HH--TSSSCEEEEECBTTBCC
T ss_pred HHHHHcCCeEEEe---CCHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH-Hh--CCCCCEEEEECCCCCCC
Confidence 3456779988753 2335566667777777 99999999998873 3333333 22 333443 555555666
No 92
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.44 E-value=54 Score=30.25 Aligned_cols=122 Identities=16% Similarity=0.260 Sum_probs=67.7
Q ss_pred CCCCCcccccchhhhHHHhhcc--------------CCCCceEeCC-C-------cccccccc-----------------
Q 048215 170 DNKSQLVGVESRVEEIESLLSV--------------ESKDVYALGF-G-------ASVDENAI----------------- 210 (305)
Q Consensus 170 ~~~~~~vG~~~~~~~l~~~L~~--------------~~~~v~ivGi-G-------~~v~e~~~----------------- 210 (305)
..-+++.|.+..+++|.+.+.. ...++-++|- | ..+.....
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccc
Confidence 3457788999999888765321 1223888999 7 11111100
Q ss_pred cchhhhhhh----hcCCceeEEeccCCCH-------------H---HHHHHHhcCCCCC--CCcEEEEEcCChHHHHhc-
Q 048215 211 PGNDLNSRR----LSCMKVLIVFDDVTCF-------------S---QLESIIGSLDWLM--PVSRTIITTRNKQVLRNW- 267 (305)
Q Consensus 211 ~~~~~l~~~----l~~kr~LlVLDdv~~~-------------~---~~~~l~~~~~~~~--~gsrIIiTTR~~~v~~~~- 267 (305)
.....++.. -....++|.+|+++.. . ....+...+..+. .+--||.||...+.+...
T Consensus 258 ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~Al 337 (434)
T 4b4t_M 258 EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPAL 337 (434)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTT
T ss_pred hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhH
Confidence 111222222 2245789999998621 0 1222333333333 233566688776654421
Q ss_pred ---C-CCceEEcCCCChHHHHHHHHHhh
Q 048215 268 ---G-VRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 268 ---~-~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
| .+..+.++..+.++-.++|..+.
T Consensus 338 lRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 338 LRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp CSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred hcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 1 35678899888888888887654
Done!