Query 048215
Match_columns 305
No_of_seqs 246 out of 2298
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 12:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048215.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048215hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a5yb3 c.37.1.20 (B:109-385) 99.8 7E-19 5.1E-23 155.3 11.6 121 171-297 18-204 (277)
2 d1fyva_ c.23.2.1 (A:) Toll-lik 99.7 1.1E-17 7.8E-22 135.8 3.0 84 4-89 9-94 (161)
3 d1fyxa_ c.23.2.1 (A:) Toll-lik 99.6 2E-16 1.4E-20 126.6 3.9 84 3-88 1-88 (149)
4 d1r6bx2 c.37.1.20 (X:169-436) 94.9 0.087 6.4E-06 43.9 10.3 117 173-291 18-194 (268)
5 d2fnaa2 c.37.1.20 (A:1-283) Ar 92.8 0.065 4.7E-06 43.6 5.5 71 220-291 133-221 (283)
6 d1ixza_ c.37.1.20 (A:) AAA dom 90.6 0.21 1.5E-05 40.9 6.1 73 221-293 99-194 (247)
7 d1sxjd2 c.37.1.20 (D:26-262) R 90.2 1.1 7.7E-05 35.3 10.3 124 171-294 10-183 (237)
8 d1njfa_ c.37.1.20 (A:) delta p 90.0 0.88 6.4E-05 36.3 9.6 70 222-291 114-187 (239)
9 d1sxjb2 c.37.1.20 (B:7-230) Re 88.2 0.34 2.5E-05 38.4 5.6 121 172-292 14-174 (224)
10 d1sxjc2 c.37.1.20 (C:12-238) R 87.9 0.5 3.7E-05 37.3 6.5 122 172-293 13-173 (227)
11 d1sxje2 c.37.1.20 (E:4-255) Re 87.4 1.1 7.8E-05 35.6 8.4 65 223-290 131-202 (252)
12 d1jbka_ c.37.1.20 (A:) ClpB, A 86.6 0.43 3.2E-05 37.5 5.2 112 173-286 22-193 (195)
13 d1wu7a1 c.51.1.1 (A:330-426) H 85.5 0.88 6.4E-05 31.1 5.9 61 6-70 2-62 (97)
14 d1a5ta2 c.37.1.20 (A:1-207) de 83.4 1.8 0.00013 33.7 7.8 69 222-290 107-179 (207)
15 d1qvra2 c.37.1.20 (A:149-535) 83.4 0.79 5.8E-05 39.9 5.9 115 173-291 22-197 (387)
16 d1e32a2 c.37.1.20 (A:201-458) 81.1 3.1 0.00023 33.5 8.6 72 220-291 94-185 (258)
17 d1fnna2 c.37.1.20 (A:1-276) CD 80.8 8.6 0.00062 29.9 11.3 35 168-202 11-53 (276)
18 d1iqpa2 c.37.1.20 (A:2-232) Re 75.0 3.6 0.00026 32.0 7.0 123 172-294 23-184 (231)
19 d1lv7a_ c.37.1.20 (A:) AAA dom 71.2 5.4 0.0004 32.0 7.3 71 221-291 102-195 (256)
20 d1l8qa2 c.37.1.20 (A:77-289) C 70.4 1.4 0.0001 34.7 3.3 68 223-291 97-178 (213)
21 d2f62a1 c.23.14.1 (A:9-160) Nu 69.4 3 0.00022 31.0 4.8 72 18-89 15-90 (152)
22 d1kmma1 c.51.1.1 (A:326-424) H 66.9 4.1 0.0003 27.4 4.9 60 6-69 2-63 (99)
23 d1qf6a1 c.51.1.1 (A:533-642) T 64.6 8.7 0.00063 26.3 6.4 63 8-74 8-70 (110)
24 d1r7ra3 c.37.1.20 (A:471-735) 64.4 7.8 0.00057 31.1 7.0 71 221-291 98-191 (265)
25 d1nyra1 c.51.1.1 (A:533-645) T 64.2 2.9 0.00021 29.1 3.6 60 9-71 15-74 (113)
26 d1w1wa_ c.37.1.12 (A:) Smc hea 59.2 2.9 0.00021 35.4 3.4 50 224-275 355-408 (427)
27 d1qe0a1 c.51.1.1 (A:326-420) H 58.7 5.9 0.00043 26.3 4.4 62 5-70 2-63 (95)
28 g1f2t.1 c.37.1.12 (A:,B:) Rad5 51.8 5.7 0.00042 31.4 3.9 58 217-276 219-280 (292)
29 d1nj1a1 c.51.1.1 (A:284-410) P 51.7 10 0.00073 26.7 4.8 48 21-71 29-76 (127)
30 d1dlja3 c.26.3.1 (A:295-402) U 51.3 10 0.00073 26.0 4.7 48 16-63 29-82 (108)
31 d1atia1 c.51.1.1 (A:395-505) G 47.5 2.3 0.00017 29.6 0.6 49 20-72 19-68 (111)
32 d1a9xa2 c.24.1.1 (A:936-1073) 47.2 27 0.002 24.9 6.7 68 2-71 2-83 (138)
33 d2i4ra1 c.149.1.1 (A:4-79) V-t 46.1 9.3 0.00068 24.5 3.5 44 29-75 11-55 (76)
34 d1g5ha1 c.51.1.1 (A:343-469) T 45.7 12 0.00089 26.2 4.5 64 7-70 12-77 (127)
35 d1f8ya_ c.23.14.1 (A:) Nucleos 40.8 16 0.0011 26.8 4.5 80 6-88 1-104 (156)
36 d1mv8a3 c.26.3.1 (A:301-436) G 39.7 9 0.00065 27.2 2.9 51 17-67 28-97 (136)
37 d3bula2 c.23.6.1 (A:741-896) M 38.1 52 0.0038 23.7 7.2 59 26-89 25-84 (156)
38 d1e69a_ c.37.1.12 (A:) Smc hea 37.3 13 0.00098 29.6 4.0 53 221-275 239-294 (308)
39 d2d00a1 c.149.1.1 (A:6-109) V- 35.5 24 0.0017 23.8 4.5 45 28-75 10-54 (104)
40 d7reqa2 c.23.6.1 (A:561-728) M 35.4 76 0.0056 23.1 8.9 81 5-89 35-115 (168)
41 d1hc7a1 c.51.1.1 (A:277-403) P 34.9 4.5 0.00033 28.7 0.4 49 22-74 30-80 (127)
42 d1sxja2 c.37.1.20 (A:295-547) 34.9 45 0.0033 25.3 6.9 67 222-290 122-196 (253)
43 d1i7qb_ c.23.16.1 (B:) Anthran 32.9 53 0.0039 24.2 6.7 59 21-83 10-70 (192)
44 d4tmka_ c.37.1.1 (A:) Thymidyl 31.6 12 0.00089 28.2 2.6 29 11-39 4-34 (210)
45 d1h4vb1 c.51.1.1 (B:326-421) H 31.5 34 0.0025 22.2 4.7 59 6-69 2-60 (96)
46 d2gnoa2 c.37.1.20 (A:11-208) g 30.7 18 0.0013 27.4 3.5 58 222-279 78-139 (198)
47 d1yl7a1 c.2.1.3 (A:2-105,A:215 28.1 90 0.0066 21.7 8.5 69 6-83 43-115 (135)
48 d2ptza1 c.1.11.1 (A:139-429) E 26.2 18 0.0013 29.6 2.7 33 6-38 225-257 (291)
49 d1nn5a_ c.37.1.1 (A:) Thymidyl 26.2 18 0.0013 27.6 2.7 31 10-40 4-36 (209)
50 d1d2na_ c.37.1.20 (A:) Hexamer 25.8 69 0.005 24.7 6.5 70 221-290 98-187 (246)
51 d1owla2 c.28.1.1 (A:3-204) DNA 25.6 60 0.0043 24.1 5.8 83 25-114 58-153 (202)
52 d1np7a2 c.28.1.1 (A:1-204) Cry 24.9 57 0.0041 24.2 5.6 57 24-87 67-123 (204)
53 d1nj8a1 c.51.1.1 (A:268-393) P 24.8 53 0.0038 22.5 5.0 46 22-71 30-75 (126)
54 d2akza1 c.1.11.1 (A:140-433) E 24.5 20 0.0014 29.3 2.7 33 6-38 223-255 (294)
55 d1c7qa_ c.80.1.2 (A:) Phosphog 22.2 52 0.0038 28.1 5.3 17 187-203 65-82 (442)
56 d1ccwa_ c.23.6.1 (A:) Glutamat 21.8 46 0.0034 23.4 4.1 60 25-89 21-81 (137)
57 g1ii8.1 c.37.1.12 (A:,B:) Rad5 21.6 21 0.0015 28.3 2.3 53 221-275 300-356 (369)
58 d1ipaa1 c.116.1.1 (A:106-263) 21.4 30 0.0022 24.8 3.1 33 224-257 11-43 (158)
59 d2fyma1 c.1.11.1 (A:140-431) E 21.4 19 0.0014 29.3 2.0 32 6-37 222-253 (292)
60 d1diha1 c.2.1.3 (A:2-130,A:241 20.0 76 0.0056 22.8 5.2 60 6-74 70-130 (162)
No 1
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}
Probab=99.77 E-value=7e-19 Score=155.25 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=93.6
Q ss_pred CCCCcccccchhhhHHHhhccCCC-C---ceEeCC-C-------cc--------cccccc--------------------
Q 048215 171 NKSQLVGVESRVEEIESLLSVESK-D---VYALGF-G-------AS--------VDENAI-------------------- 210 (305)
Q Consensus 171 ~~~~~vG~~~~~~~l~~~L~~~~~-~---v~ivGi-G-------~~--------v~e~~~-------------------- 210 (305)
....++||+.++++|.++|....+ + |.|+|| | .. +..+|+
T Consensus 18 ~~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~ 97 (277)
T d2a5yb3 18 KQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT 97 (277)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHH
Confidence 345688999999999999875322 2 788899 6 11 111222
Q ss_pred -------------------c------chhhhhhhhcCCceeEEeccCCCHHHHHHHHhcCCCCCCCcEEEEEcCChHHHH
Q 048215 211 -------------------P------GNDLNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLR 265 (305)
Q Consensus 211 -------------------~------~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~ 265 (305)
. ....+...|.++|+|+||||||+.++|+.+.. .|||||||||++.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v~~ 171 (277)
T d2a5yb3 98 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEISN 171 (277)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGGGG
T ss_pred HHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHHHHH
Confidence 0 12235677889999999999999999987753 5899999999999999
Q ss_pred hcCCC-ceEEcCCCChHHHHHHHHHhhcCCCCC
Q 048215 266 NWGVR-KICEMEALEYHHALELFSRHAFKQNHP 297 (305)
Q Consensus 266 ~~~~~-~~~~v~~L~~~ea~~Lf~~~Af~~~~~ 297 (305)
.+... +.|+|++|+.+|||+||+++||....+
T Consensus 172 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 204 (277)
T d2a5yb3 172 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVG 204 (277)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--
T ss_pred hcCCCCceEECCCCCHHHHHHHHHHHhCCccCc
Confidence 87654 789999999999999999999987655
No 2
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.66 E-value=1.1e-17 Score=135.81 Aligned_cols=84 Identities=23% Similarity=0.471 Sum_probs=77.9
Q ss_pred CCCcccEEecCCcCcCCcchH-HHHHHHHhcCCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhHHH
Q 048215 4 STKKYDVFVSFRGEDTLDDFT-SHLYSALSRQNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDE 81 (305)
Q Consensus 4 ~~~~~dVFis~~~~D~~~~f~-~~L~~~L~~~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~E 81 (305)
...+|||||||+++| ..|+ ..|...|+++|+++|+|+ ++..|+.+.++|.+||++|+..|+|+|++|..|.||..|
T Consensus 9 ~~~~yDvFisys~~D--~~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E 86 (161)
T d1fyva_ 9 RNLQFHAFISYSGHD--SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYE 86 (161)
T ss_dssp SCCCEEEEEECCGGG--HHHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHH
T ss_pred CCCeeEEEEecChhH--HHHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHH
Confidence 356899999999999 5677 579999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 048215 82 LAEILECK 89 (305)
Q Consensus 82 L~~i~e~~ 89 (305)
+..++.+.
T Consensus 87 ~~~a~~~~ 94 (161)
T d1fyva_ 87 LYFAHHNL 94 (161)
T ss_dssp HHTTSCCC
T ss_pred HHHHHHHH
Confidence 99888754
No 3
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.59 E-value=2e-16 Score=126.59 Aligned_cols=84 Identities=24% Similarity=0.397 Sum_probs=75.0
Q ss_pred CCCCcccEEecCCcCcCCcchHH-HHHHHHhc--CCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhh
Q 048215 3 SSTKKYDVFVSFRGEDTLDDFTS-HLYSALSR--QNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYASSRWC 78 (305)
Q Consensus 3 s~~~~~dVFis~~~~D~~~~f~~-~L~~~L~~--~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~c 78 (305)
|....|||||||+++| ..|+. +|...|++ .|+++|+|+ ++..|+.+.++|.++|++|+..|+|+|++|..|.||
T Consensus 1 ~~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc 78 (149)
T d1fyxa_ 1 SRNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC 78 (149)
T ss_dssp CCSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred CCCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence 4678999999999999 56664 68999975 489999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 048215 79 LDELAEILEC 88 (305)
Q Consensus 79 l~EL~~i~e~ 88 (305)
..|+...+..
T Consensus 79 ~~E~~~a~~~ 88 (149)
T d1fyxa_ 79 KYELDFSHFR 88 (149)
T ss_dssp HHHSCCSCCT
T ss_pred HHHHHHHHHH
Confidence 9999766543
No 4
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=94.88 E-value=0.087 Score=43.91 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=74.7
Q ss_pred CCcccccchhhhHHHhhccC-CCCceEeCC-C----------------cccccccc--------------------cchh
Q 048215 173 SQLVGVESRVEEIESLLSVE-SKDVYALGF-G----------------ASVDENAI--------------------PGND 214 (305)
Q Consensus 173 ~~~vG~~~~~~~l~~~L~~~-~~~v~ivGi-G----------------~~v~e~~~--------------------~~~~ 214 (305)
+.++||+.+++++.+.|... .+++.+||- | .++-+... +..+
T Consensus 18 d~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~ 97 (268)
T d1r6bx2 18 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEK 97 (268)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHH
T ss_pred CcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHH
Confidence 45899999999999999754 455899999 7 11111111 1112
Q ss_pred h---hhhhh-cCCceeEEeccCCCH----------HHHHHHHhcCCCCCCC-cEEEEEcCChHHHHhcCCC-------ce
Q 048215 215 L---NSRRL-SCMKVLIVFDDVTCF----------SQLESIIGSLDWLMPV-SRTIITTRNKQVLRNWGVR-------KI 272 (305)
Q Consensus 215 ~---l~~~l-~~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~g-srIIiTTR~~~v~~~~~~~-------~~ 272 (305)
. +-+.+ ...+++|++|++... .+...+..+ ....| =++|-||..++.......+ +.
T Consensus 98 r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp--~L~rg~i~vIgatT~eey~~~~e~d~al~rrF~~ 175 (268)
T d1r6bx2 98 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP--LLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQK 175 (268)
T ss_dssp HHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSS--CSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEE
T ss_pred HHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhH--HHhCCCCeEEEeCCHHHHHHHHhhcHHHHhhhcc
Confidence 2 22223 456899999997532 223333332 23444 4788888888776654322 46
Q ss_pred EEcCCCChHHHHHHHHHhh
Q 048215 273 CEMEALEYHHALELFSRHA 291 (305)
Q Consensus 273 ~~v~~L~~~ea~~Lf~~~A 291 (305)
..|++++.+++.+++...+
T Consensus 176 I~V~Eps~e~t~~IL~~~~ 194 (268)
T d1r6bx2 176 IDITEPSIEETVQIINGLK 194 (268)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 7899999999999887543
No 5
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=92.84 E-value=0.065 Score=43.58 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=40.6
Q ss_pred hcCCceeEEeccCCCH------HHHHHHHhcCCCCCCCcEEEEEcCChHHHHhcC------------CCceEEcCCCChH
Q 048215 220 LSCMKVLIVFDDVTCF------SQLESIIGSLDWLMPVSRTIITTRNKQVLRNWG------------VRKICEMEALEYH 281 (305)
Q Consensus 220 l~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~------------~~~~~~v~~L~~~ 281 (305)
...+++++|+|++... ..+..+..... .......+++++.......+. ....+.|.+|+.+
T Consensus 133 ~~~~~~~i~id~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~ 211 (283)
T d2fnaa2 133 ASKDNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSRE 211 (283)
T ss_dssp TCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHH
T ss_pred hcccccccccchhhhhcccchHHHHHHHHHHHH-hhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHH
Confidence 3467899999987421 11222221111 223445566665554433221 1246789999999
Q ss_pred HHHHHHHHhh
Q 048215 282 HALELFSRHA 291 (305)
Q Consensus 282 ea~~Lf~~~A 291 (305)
++.+++.+.+
T Consensus 212 e~~~~l~~~~ 221 (283)
T d2fnaa2 212 EAIEFLRRGF 221 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999987653
No 6
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=90.57 E-value=0.21 Score=40.91 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=43.2
Q ss_pred cCCceeEEeccCCCHH----------------HHHHHHhcCCCCC--CCcEEEEEcCChHHHHh-c----CCCceEEcCC
Q 048215 221 SCMKVLIVFDDVTCFS----------------QLESIIGSLDWLM--PVSRTIITTRNKQVLRN-W----GVRKICEMEA 277 (305)
Q Consensus 221 ~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~gsrIIiTTR~~~v~~~-~----~~~~~~~v~~ 277 (305)
...+++|+|||++... .+..+...+.... ++--||-||...+-+.. + ..++.++++.
T Consensus 99 ~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~ 178 (247)
T d1ixza_ 99 RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 178 (247)
T ss_dssp TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCS
T ss_pred HcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECC
Confidence 3567899999986210 1222222222222 22234447766544332 1 2467899999
Q ss_pred CChHHHHHHHHHhhcC
Q 048215 278 LEYHHALELFSRHAFK 293 (305)
Q Consensus 278 L~~~ea~~Lf~~~Af~ 293 (305)
.+.++-.++|..+.-+
T Consensus 179 P~~~eR~~il~~~l~~ 194 (247)
T d1ixza_ 179 PDVKGREQILRIHARG 194 (247)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHhcc
Confidence 9999999999887644
No 7
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=90.21 E-value=1.1 Score=35.27 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=73.8
Q ss_pred CCCCcccccchhhhHHHhhccCCC-CceEeCC-C-----------cccccc----cc-----------------------
Q 048215 171 NKSQLVGVESRVEEIESLLSVESK-DVYALGF-G-----------ASVDEN----AI----------------------- 210 (305)
Q Consensus 171 ~~~~~vG~~~~~~~l~~~L~~~~~-~v~ivGi-G-----------~~v~e~----~~----------------------- 210 (305)
..++++|.+..++.|.+++..... .+.+.|- | ..+... ..
T Consensus 10 ~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (237)
T d1sxjd2 10 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFA 89 (237)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHH
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHHHh
Confidence 346799999999999999876543 3778888 7 010000 00
Q ss_pred ------cchhhhhhhhcCCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCCh-HHHHhc-CCCceEEcCCCCh
Q 048215 211 ------PGNDLNSRRLSCMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNK-QVLRNW-GVRKICEMEALEY 280 (305)
Q Consensus 211 ------~~~~~l~~~l~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~ 280 (305)
.....+......++-++|+|++.. ...+..+...+......+++|+||.+. .+.... ..-..+++++++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~~ 169 (237)
T d1sxjd2 90 RLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDA 169 (237)
T ss_dssp HSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCH
T ss_pred hhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhhhhccccccc
Confidence 011222233333444689999873 344555444444445667777776553 222211 1125789999999
Q ss_pred HHHHHHHHHhhcCC
Q 048215 281 HHALELFSRHAFKQ 294 (305)
Q Consensus 281 ~ea~~Lf~~~Af~~ 294 (305)
++...++.+-+...
T Consensus 170 ~~~~~~L~~i~~~e 183 (237)
T d1sxjd2 170 SNAIDRLRFISEQE 183 (237)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred cccchhhhhhhhhh
Confidence 99999998776543
No 8
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=89.99 E-value=0.88 Score=36.34 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=46.4
Q ss_pred CCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChHHH-Hhc-CCCceEEcCCCChHHHHHHHHHhh
Q 048215 222 CMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQVL-RNW-GVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 222 ~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~-~~~-~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
+++-++|||+++. ...-..|...+......+++|+||.+..-. ... ..-..+.+++++.++-.+.....+
T Consensus 114 ~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~ 187 (239)
T d1njfa_ 114 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 187 (239)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhcccccccCcHHHhhhHHHHHH
Confidence 3456889999984 344566666665566778888887664322 221 123578899999988877766544
No 9
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=88.18 E-value=0.34 Score=38.37 Aligned_cols=121 Identities=11% Similarity=0.155 Sum_probs=72.0
Q ss_pred CCCcccccchhhhHHHhhccCCC-CceEeCC-C-----------cc---------cccccc-c--ch----hhhhhh---
Q 048215 172 KSQLVGVESRVEEIESLLSVESK-DVYALGF-G-----------AS---------VDENAI-P--GN----DLNSRR--- 219 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~~-~v~ivGi-G-----------~~---------v~e~~~-~--~~----~~l~~~--- 219 (305)
.+++||-+..++.|.+++..+.. .+-+.|- | .. +.+... + .. ..+...
T Consensus 14 ~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~~ 93 (224)
T d1sxjb2 14 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQK 93 (224)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceehhhHHHHHHHh
Confidence 37899999999999999986543 4778898 7 00 101000 0 11 111111
Q ss_pred ----hcCCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCCh-HHHHhc-CCCceEEcCCCChHHHHHHHHHhh
Q 048215 220 ----LSCMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNK-QVLRNW-GVRKICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 220 ----l~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~A 291 (305)
...+.-++|+|++.. ......+...+......+++|+||.+. .+.... ..-..+++++++.++-...+.+-+
T Consensus 94 ~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~ 173 (224)
T d1sxjb2 94 KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQII 173 (224)
T ss_dssp CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hccCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHhhhcccchhhhHHHHHHHH
Confidence 123556888999874 344444444444455667776666554 332221 223578999999999988887665
Q ss_pred c
Q 048215 292 F 292 (305)
Q Consensus 292 f 292 (305)
-
T Consensus 174 ~ 174 (224)
T d1sxjb2 174 K 174 (224)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=87.86 E-value=0.5 Score=37.25 Aligned_cols=122 Identities=10% Similarity=0.096 Sum_probs=74.3
Q ss_pred CCCcccccchhhhHHHhhccCCC-CceEeCC-C-----------ccc---------ccc--cc-cchhh----------h
Q 048215 172 KSQLVGVESRVEEIESLLSVESK-DVYALGF-G-----------ASV---------DEN--AI-PGNDL----------N 216 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~~-~v~ivGi-G-----------~~v---------~e~--~~-~~~~~----------l 216 (305)
.+++||-+..++.|.+++..+.- .+-+.|- | ..+ .+. .+ ..... .
T Consensus 13 ~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 92 (227)
T d1sxjc2 13 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAST 92 (227)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhcccc
Confidence 36799999889999999876543 3778899 7 000 000 00 00000 1
Q ss_pred hhhhcCCceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCCh-HHHHhc-CCCceEEcCCCChHHHHHHHHHhhc
Q 048215 217 SRRLSCMKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNK-QVLRNW-GVRKICEMEALEYHHALELFSRHAF 292 (305)
Q Consensus 217 ~~~l~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~Af 292 (305)
.....+++-.+|+|++.. ...-..|...+......++++++|.+. .+.... ..-..+++++++.++-.+++.+-+-
T Consensus 93 ~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~ 172 (227)
T d1sxjc2 93 RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLV 172 (227)
T ss_dssp CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhhccccccccccccccccccc
Confidence 112223455888999974 344455555555566788888888764 332221 2246788999999998888876554
Q ss_pred C
Q 048215 293 K 293 (305)
Q Consensus 293 ~ 293 (305)
.
T Consensus 173 ~ 173 (227)
T d1sxjc2 173 H 173 (227)
T ss_dssp T
T ss_pred c
Confidence 4
No 11
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=87.39 E-value=1.1 Score=35.62 Aligned_cols=65 Identities=6% Similarity=0.036 Sum_probs=43.5
Q ss_pred CceeEEeccCCC--HHHHHHHHhcCCCCCCCcEEEEEcCChH-----HHHhcCCCceEEcCCCChHHHHHHHHHh
Q 048215 223 MKVLIVFDDVTC--FSQLESIIGSLDWLMPVSRTIITTRNKQ-----VLRNWGVRKICEMEALEYHHALELFSRH 290 (305)
Q Consensus 223 kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~-----v~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 290 (305)
+.-++|||+++. ...+..+...+......+++|+||.+.+ +...| ..+++++++.++..+.+..-
T Consensus 131 ~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l~sR~---~~i~~~~~~~~~~~~~l~~i 202 (252)
T d1sxje2 131 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC---LLIRCPAPSDSEISTILSDV 202 (252)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS---EEEECCCCCHHHHHHHHHHH
T ss_pred CceEEEeccccccccccchhhhcccccccccccceeeeccccchhhhhhcch---heeeecccchhhHHHHHHHH
Confidence 344888899885 3445555555555567788888876543 22222 46889999999988887653
No 12
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=86.63 E-value=0.43 Score=37.49 Aligned_cols=112 Identities=9% Similarity=0.065 Sum_probs=66.2
Q ss_pred CCcccccchhhhHHHhhcc-CCCCceEeCC-C----------------cccccccc--------------------cch-
Q 048215 173 SQLVGVESRVEEIESLLSV-ESKDVYALGF-G----------------ASVDENAI--------------------PGN- 213 (305)
Q Consensus 173 ~~~vG~~~~~~~l~~~L~~-~~~~v~ivGi-G----------------~~v~e~~~--------------------~~~- 213 (305)
+.++||+.+++++.+.|.. ..+++-+||= | .++-+... +..
T Consensus 22 d~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~ 101 (195)
T d1jbka_ 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEE 101 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHH
Confidence 4589999999999999985 4456889998 7 11111111 111
Q ss_pred ---hhhhhhhcC-CceeEEeccCCCHH----------HHHHHHhcCCCCCCCcEEEEEcCChHHHHhcCC-------Cce
Q 048215 214 ---DLNSRRLSC-MKVLIVFDDVTCFS----------QLESIIGSLDWLMPVSRTIITTRNKQVLRNWGV-------RKI 272 (305)
Q Consensus 214 ---~~l~~~l~~-kr~LlVLDdv~~~~----------~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~-------~~~ 272 (305)
..+...... .+++|++|++...- .-+.|.+.+. ...=++|.||..++.-..... =+.
T Consensus 102 rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~--rg~l~~IgatT~eey~~~~e~d~aL~rrF~~ 179 (195)
T d1jbka_ 102 RLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQK 179 (195)
T ss_dssp HHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEE
T ss_pred HHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHh--CCCceEEecCCHHHHHHHHHcCHHHHhcCCE
Confidence 222232233 47999999986331 1122222221 122467888876666554332 146
Q ss_pred EEcCCCChHHHHHH
Q 048215 273 CEMEALEYHHALEL 286 (305)
Q Consensus 273 ~~v~~L~~~ea~~L 286 (305)
+.|++++.+++..+
T Consensus 180 I~V~Ep~~e~t~~I 193 (195)
T d1jbka_ 180 VFVAEPSVEDTIAI 193 (195)
T ss_dssp EECCCCCHHHHHTT
T ss_pred eecCCCCHHHHHHH
Confidence 78889998888754
No 13
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=85.49 E-value=0.88 Score=31.06 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=45.2
Q ss_pred CcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeec
Q 048215 6 KKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSE 70 (305)
Q Consensus 6 ~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~ 70 (305)
.+.+|||..-|.... .++-.|...|+.+||++.+|. .+..+...+..|-..---+++|+-+
T Consensus 2 ~~~~V~i~~~g~~~~-~~~~~l~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iiiG~ 62 (97)
T d1wu7a1 2 EKKSVYICRVGKINS-SIMNEYSRKLRERGMNVTVEI---MERGLSAQLKYASAIGADFAVIFGE 62 (97)
T ss_dssp SSCEEEEEEESSCCH-HHHHHHHHHHHTTTCEEEECC---SCCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred CCceEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEC---CCCcHHHHHHHHHhcCCCeEEecCC
Confidence 467899998887754 588899999999999999875 3456766677776544445565554
No 14
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=83.44 E-value=1.8 Score=33.65 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCceeEEeccCC--CHHHHHHHHhcCCCCCCCcEEEEEcCChH-HHHhc-CCCceEEcCCCChHHHHHHHHHh
Q 048215 222 CMKVLIVFDDVT--CFSQLESIIGSLDWLMPVSRTIITTRNKQ-VLRNW-GVRKICEMEALEYHHALELFSRH 290 (305)
Q Consensus 222 ~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~ 290 (305)
+++-++|+|+++ +.+....|...+.....++++|+||.+.+ +.... .--..+.+++++.++....+...
T Consensus 107 ~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~~~~~~~~~~L~~~ 179 (207)
T d1a5ta2 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSRE 179 (207)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred CccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEecCCCCHHHHHHHHHHc
Confidence 456689999998 45667788877777778899888887754 44332 22368899999999998888654
No 15
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=83.43 E-value=0.79 Score=39.87 Aligned_cols=115 Identities=10% Similarity=0.102 Sum_probs=66.5
Q ss_pred CCcccccchhhhHHHhhcc-CCCCceEeCC-C----------------cccccccc-----------------------c
Q 048215 173 SQLVGVESRVEEIESLLSV-ESKDVYALGF-G----------------ASVDENAI-----------------------P 211 (305)
Q Consensus 173 ~~~vG~~~~~~~l~~~L~~-~~~~v~ivGi-G----------------~~v~e~~~-----------------------~ 211 (305)
+.++||+.++.++.+.|.. ..+++.+||- | .+|-+... .
T Consensus 22 d~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~ 101 (387)
T d1qvra2 22 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEE 101 (387)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHH
T ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHH
Confidence 5589999999999998874 4556889998 7 11111111 1
Q ss_pred chhhhhhhh-cC-CceeEEeccCCCHHH----------HHHHHhcCCCCCCC-cEEEEEcCChHHHHhcCC-------Cc
Q 048215 212 GNDLNSRRL-SC-MKVLIVFDDVTCFSQ----------LESIIGSLDWLMPV-SRTIITTRNKQVLRNWGV-------RK 271 (305)
Q Consensus 212 ~~~~l~~~l-~~-kr~LlVLDdv~~~~~----------~~~l~~~~~~~~~g-srIIiTTR~~~v~~~~~~-------~~ 271 (305)
....+-..+ .. .+++|++|++...-. -+.|.+.+ ..| =++|-+|...+.-. +.. =+
T Consensus 102 r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L---~rg~~~~I~~tT~~ey~~-~e~d~al~rrF~ 177 (387)
T d1qvra2 102 RLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL---ARGELRLIGATTLDEYRE-IEKDPALERRFQ 177 (387)
T ss_dssp HHHHHHHHHHTTCSSEEEEECCC-------------------HHHH---HTTCCCEEEEECHHHHHH-HTTCTTTCSCCC
T ss_pred HHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHH---hCCCcceeeecCHHHHHH-hcccHHHHHhcc
Confidence 122222223 33 379999999975421 12222222 123 36777777666643 321 24
Q ss_pred eEEcCCCChHHHHHHHHHhh
Q 048215 272 ICEMEALEYHHALELFSRHA 291 (305)
Q Consensus 272 ~~~v~~L~~~ea~~Lf~~~A 291 (305)
...|++.+.+++..++...+
T Consensus 178 ~v~v~ep~~~~~~~il~~~~ 197 (387)
T d1qvra2 178 PVYVDEPTVEETISILRGLK 197 (387)
T ss_dssp CEEECCCCHHHHHHHHHHHH
T ss_pred cccCCCCcHHHHHHHHHHHH
Confidence 67899999999999887544
No 16
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=81.11 E-value=3.1 Score=33.46 Aligned_cols=72 Identities=10% Similarity=0.169 Sum_probs=45.1
Q ss_pred hcCCceeEEeccCCCHH-------------HHHHHHhcC--CCCCCCcEEEEEcCChHHHHh----cC-CCceEEcCCCC
Q 048215 220 LSCMKVLIVFDDVTCFS-------------QLESIIGSL--DWLMPVSRTIITTRNKQVLRN----WG-VRKICEMEALE 279 (305)
Q Consensus 220 l~~kr~LlVLDdv~~~~-------------~~~~l~~~~--~~~~~gsrIIiTTR~~~v~~~----~~-~~~~~~v~~L~ 279 (305)
-...+.+|+|||++... ....+.... ....++--||.||...+-+.. .| .+..++++..+
T Consensus 94 ~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~ 173 (258)
T d1e32a2 94 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 173 (258)
T ss_dssp HHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCC
T ss_pred HhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCC
Confidence 34678999999997420 011111111 122344456778987755432 22 47889999999
Q ss_pred hHHHHHHHHHhh
Q 048215 280 YHHALELFSRHA 291 (305)
Q Consensus 280 ~~ea~~Lf~~~A 291 (305)
.++-.++|..+.
T Consensus 174 ~~~R~~il~~~l 185 (258)
T d1e32a2 174 ATGRLEILQIHT 185 (258)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHhhhhc
Confidence 999999998654
No 17
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=80.79 E-value=8.6 Score=29.87 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCCCCCCcccccchhhhHHHhhcc---CC----CCceEeCC-C
Q 048215 168 PRDNKSQLVGVESRVEEIESLLSV---ES----KDVYALGF-G 202 (305)
Q Consensus 168 ~~~~~~~~vG~~~~~~~l~~~L~~---~~----~~v~ivGi-G 202 (305)
|...+..++||+.+++.|.++|.. .. ..+.+.|. |
T Consensus 11 ~~y~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppG 53 (276)
T d1fnna2 11 PSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPG 53 (276)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCC
Confidence 335677899999999999998863 11 23889999 7
No 18
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=75.04 E-value=3.6 Score=32.02 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=72.9
Q ss_pred CCCcccccchhhhHHHhhccCCCC-ceEeCC-C-----------cccc-cccc---------------cchhhhh-----
Q 048215 172 KSQLVGVESRVEEIESLLSVESKD-VYALGF-G-----------ASVD-ENAI---------------PGNDLNS----- 217 (305)
Q Consensus 172 ~~~~vG~~~~~~~l~~~L~~~~~~-v~ivGi-G-----------~~v~-e~~~---------------~~~~~l~----- 217 (305)
.++++|-+.-++.|..++..+... +-+.|- | ..+. +.+. .......
T Consensus 23 ~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~~~~~~~~~~~~~~~ 102 (231)
T d1iqpa2 23 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 102 (231)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHS
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccchhHHHHHHHHHHhh
Confidence 478999999999999999865433 778898 7 0100 0000 0111111
Q ss_pred -hhhcCCceeEEeccCC--CHHHHHHHHhcCCCCCCCcEEEEEcCC-hHHHHhc-CCCceEEcCCCChHHHHHHHHHhhc
Q 048215 218 -RRLSCMKVLIVFDDVT--CFSQLESIIGSLDWLMPVSRTIITTRN-KQVLRNW-GVRKICEMEALEYHHALELFSRHAF 292 (305)
Q Consensus 218 -~~l~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~Af 292 (305)
.....++.++++|++. ....+..|...+........+|.||.. ..+.... ..-..+.+.+.+.++....+.+.+-
T Consensus 103 ~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~ 182 (231)
T d1iqpa2 103 KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 182 (231)
T ss_dssp CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccccccccccchhhHHHHHHHHHH
Confidence 1123457788889886 345555555544444444566666544 3333322 1235788999999998888887765
Q ss_pred CC
Q 048215 293 KQ 294 (305)
Q Consensus 293 ~~ 294 (305)
..
T Consensus 183 ~e 184 (231)
T d1iqpa2 183 NE 184 (231)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 19
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=71.22 E-value=5.4 Score=32.03 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=42.9
Q ss_pred cCCceeEEeccCCCH-------------H---HHHHHHhcCCC--CCCCcEEEEEcCChHHHHh----c-CCCceEEcCC
Q 048215 221 SCMKVLIVFDDVTCF-------------S---QLESIIGSLDW--LMPVSRTIITTRNKQVLRN----W-GVRKICEMEA 277 (305)
Q Consensus 221 ~~kr~LlVLDdv~~~-------------~---~~~~l~~~~~~--~~~gsrIIiTTR~~~v~~~----~-~~~~~~~v~~ 277 (305)
...+++|++||++.. . .+..+...+.. ...+--||-||.+.+.+.. . ..++.+.++.
T Consensus 102 ~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~ 181 (256)
T d1lv7a_ 102 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181 (256)
T ss_dssp TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCC
T ss_pred HcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCC
Confidence 456789999998521 1 12223222221 2233456668877554431 1 2467899999
Q ss_pred CChHHHHHHHHHhh
Q 048215 278 LEYHHALELFSRHA 291 (305)
Q Consensus 278 L~~~ea~~Lf~~~A 291 (305)
.+.++-.++|..+.
T Consensus 182 P~~~~R~~il~~~l 195 (256)
T d1lv7a_ 182 PDVRGREQILKVHM 195 (256)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhc
Confidence 99999999988765
No 20
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=70.35 E-value=1.4 Score=34.67 Aligned_cols=68 Identities=12% Similarity=0.264 Sum_probs=43.2
Q ss_pred CceeEEeccCCCH---HHHHH-HHhcCCC-CCCCcEEEEEcCCh---------HHHHhcCCCceEEcCCCChHHHHHHHH
Q 048215 223 MKVLIVFDDVTCF---SQLES-IIGSLDW-LMPVSRTIITTRNK---------QVLRNWGVRKICEMEALEYHHALELFS 288 (305)
Q Consensus 223 kr~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~Lf~ 288 (305)
.--+|+|||+... ..|+. +...+.. ...|..||+||+.. ++...+....+++++ +++++-.+++.
T Consensus 97 ~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~ 175 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIK 175 (213)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHH
T ss_pred hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHH
Confidence 3578999999732 44543 2222222 23788999999853 344444455678886 57777778877
Q ss_pred Hhh
Q 048215 289 RHA 291 (305)
Q Consensus 289 ~~A 291 (305)
++|
T Consensus 176 ~~a 178 (213)
T d1l8qa2 176 EKL 178 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 21
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}
Probab=69.45 E-value=3 Score=30.96 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=52.3
Q ss_pred cCCcchHHHHHHHHhcCCceeEE--eCCCCCCCcchHHHHHHHHhcCcEEEEeecC--cccchhhHHHHHHHHHHh
Q 048215 18 DTLDDFTSHLYSALSRQNIQTFI--DDQLNRGYEISESLVKAIKASAISVIIFSED--YASSRWCLDELAEILECK 89 (305)
Q Consensus 18 D~~~~f~~~L~~~L~~~gi~~f~--d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~--y~~S~~cl~EL~~i~e~~ 89 (305)
|....+...+.+.|...|+.+|. |+..+....|-..-.++|++|++.|.++.+- -..+.-+.-|+-...-..
T Consensus 15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~alg 90 (152)
T d2f62a1 15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN 90 (152)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCC
Confidence 33355788899999999999986 3345555667777889999999999999742 223456777877666553
No 22
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=66.89 E-value=4.1 Score=27.41 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=42.3
Q ss_pred CcccEEecCCcCcCCcchHHHHHHHHhcC--CceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEee
Q 048215 6 KKYDVFVSFRGEDTLDDFTSHLYSALSRQ--NIQTFIDDQLNRGYEISESLVKAIKASAISVIIFS 69 (305)
Q Consensus 6 ~~~dVFis~~~~D~~~~f~~~L~~~L~~~--gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S 69 (305)
+..||||-.-|++.. ..+-.|...|+.+ |+.+..|. .+..+...+..|-..---+++|+-
T Consensus 2 p~vdv~vi~~~~~~~-~~a~~la~~LR~~~~gi~v~~~~---~~~~l~kq~k~A~~~~~~~~iiiG 63 (99)
T d1kmma1 2 PVVDIYLVASGADTQ-SAAMALAERLRDELPGVKLMTNH---GGGNFKKQFARADKWGARVAVVLG 63 (99)
T ss_dssp CSCSEEEECCSTTHH-HHHHHHHHHHHHHSTTCCEEECC---SCCCHHHHHHHHHHHTCSEEEECC
T ss_pred CCCEEEEEECCHHHH-HHHHHHHHHHHhcCCCeEEEEeC---CCCCHHHHHHHHHHhCCChhhhcC
Confidence 568999988777643 4778899999876 99998875 345676667777664444555554
No 23
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=64.57 E-value=8.7 Score=26.26 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=42.2
Q ss_pred ccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecCccc
Q 048215 8 YDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYAS 74 (305)
Q Consensus 8 ~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~ 74 (305)
++|.|--=+.+ ...++..|+..|+..||++.+|+ ++..+...+.+|-..---.++|+.++-+.
T Consensus 8 ~Qv~iipi~~~-~~~~a~~i~~~Lr~~gi~v~~d~---~~~~l~~ki~~a~~~g~p~~iiiG~~E~~ 70 (110)
T d1qf6a1 8 VQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADL---RNEKIGFKIREHTLRRVPYMLVCGDKEVE 70 (110)
T ss_dssp SCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEEC---CSSCHHHHHHHHHHTTCSEEEEECTTTGG
T ss_pred ceEEEEeccHH-HHHHHHHHHHHHHHhhccccccC---CccchhHHHHHHHHcCCCEEEEECchHHh
Confidence 44544322222 35689999999999999999987 34566666777766555566666765444
No 24
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=64.36 E-value=7.8 Score=31.06 Aligned_cols=71 Identities=10% Similarity=0.215 Sum_probs=43.5
Q ss_pred cCCceeEEeccCCCHH----------------HHHHHHhcCCCCC--CCcEEEEEcCChHHHH----hcC-CCceEEcCC
Q 048215 221 SCMKVLIVFDDVTCFS----------------QLESIIGSLDWLM--PVSRTIITTRNKQVLR----NWG-VRKICEMEA 277 (305)
Q Consensus 221 ~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~gsrIIiTTR~~~v~~----~~~-~~~~~~v~~ 277 (305)
...+++|+|||++... ....+...+.... ++--||-||...+-+. ..| .+..++++.
T Consensus 98 ~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~ 177 (265)
T d1r7ra3 98 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 177 (265)
T ss_dssp HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCC
T ss_pred hcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecc
Confidence 3568999999996210 1233443343222 3345677887665432 122 367889999
Q ss_pred CChHHHHHHHHHhh
Q 048215 278 LEYHHALELFSRHA 291 (305)
Q Consensus 278 L~~~ea~~Lf~~~A 291 (305)
.+.++-.++|..+.
T Consensus 178 p~~~~R~~il~~~l 191 (265)
T d1r7ra3 178 PDEKSRVAILKANL 191 (265)
T ss_dssp CCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999997653
No 25
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=64.16 E-value=2.9 Score=29.09 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=37.9
Q ss_pred cEEecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecC
Q 048215 9 DVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSED 71 (305)
Q Consensus 9 dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~ 71 (305)
+|.|---+.|....++..|++.|+..||++.+|+ ++..+...+..|-..--=.++|+.++
T Consensus 15 qv~iipi~~~~~~~~a~~l~~~Lr~~gi~v~~D~---~~~~~g~k~~~a~~~g~p~~iiiG~~ 74 (113)
T d1nyra1 15 QVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDD---RNEKMGYKIREAQMQKIPYQIVVGDK 74 (113)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECC---SSCCHHHHHHHHHHHTCSEEEEECHH
T ss_pred eEEEEEeCcHHHhhhHHHHHHHhhhhccceeecc---cccccchHHHHHHHhCceEEEEEccc
Confidence 4533323444334588999999999999999987 23344455555555444456666644
No 26
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=59.24 E-value=2.9 Score=35.43 Aligned_cols=50 Identities=12% Similarity=0.245 Sum_probs=32.7
Q ss_pred ceeEEeccCCC---HHHHHHHHhcCCC-CCCCcEEEEEcCChHHHHhcCCCceEEc
Q 048215 224 KVLIVFDDVTC---FSQLESIIGSLDW-LMPVSRTIITTRNKQVLRNWGVRKICEM 275 (305)
Q Consensus 224 r~LlVLDdv~~---~~~~~~l~~~~~~-~~~gsrIIiTTR~~~v~~~~~~~~~~~v 275 (305)
.=+++||++.. ......+...+.. ...++.+|+||.+++++..+ +..|.|
T Consensus 355 ~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~a--d~~~~V 408 (427)
T d1w1wa_ 355 SPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKS--DALVGV 408 (427)
T ss_dssp CSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTC--SEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhc--ccEEEE
Confidence 34788999983 3334444433322 24678999999999999875 455554
No 27
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=58.70 E-value=5.9 Score=26.29 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=43.8
Q ss_pred CCcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeec
Q 048215 5 TKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSE 70 (305)
Q Consensus 5 ~~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~ 70 (305)
....||||.--+++. ....-.|...|+..|+++..|. .+..+...+..|=+.---+++|+.+
T Consensus 2 e~~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iiiG~ 63 (95)
T d1qe0a1 2 EENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDY---LQRKIKGQMKQADRLGAKFTIVIGD 63 (95)
T ss_dssp CCCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECC---SCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecC---CCCCHHHHHHHHHhcCCCEEEEEcc
Confidence 346789988666553 3578899999999999998875 4456766677776655455666553
No 28
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=51.85 E-value=5.7 Score=31.41 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=36.6
Q ss_pred hhhhcCCceeEEeccCC---CHHHHHHHHhcCCCC-CCCcEEEEEcCChHHHHhcCCCceEEcC
Q 048215 217 SRRLSCMKVLIVFDDVT---CFSQLESIIGSLDWL-MPVSRTIITTRNKQVLRNWGVRKICEME 276 (305)
Q Consensus 217 ~~~l~~kr~LlVLDdv~---~~~~~~~l~~~~~~~-~~gsrIIiTTR~~~v~~~~~~~~~~~v~ 276 (305)
.+.+..+.-||+||+.. ++..-..|...+... ..|..||+||.+.+++..+ ++++.+.
T Consensus 219 ~~~l~~~~~llllDEp~~~Ld~~~~~~l~~~l~~~~~~~~qviv~TH~~~~~~~~--D~ii~l~ 280 (292)
T g1f2t.1 219 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA--DHVIRIS 280 (292)
T ss_dssp HHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC--SEEEEEE
T ss_pred hhhhcCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeecHHHHHhC--CEEEEEE
Confidence 34455666799999986 333323333322222 2456899999999998763 5677654
No 29
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=51.71 E-value=10 Score=26.71 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=33.7
Q ss_pred cchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecC
Q 048215 21 DDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSED 71 (305)
Q Consensus 21 ~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~ 71 (305)
..++..|+..|...||.+.+|+ +++.++..+..|-..--=.++|+.++
T Consensus 29 ~~~a~~l~~~L~~~gi~v~~D~---r~~~~g~K~~~a~~~giP~~iiiG~k 76 (127)
T d1nj1a1 29 MEACRELRSRLEAAGFRVHLDD---RDIRAGRKYYEWEMRGVPLRVEIGPR 76 (127)
T ss_dssp HHHHHHHHHHHHTTTCCEEECC---CSSCHHHHHHHHHHEECSEEEEECHH
T ss_pred HHHHHHHHHHHHhcCCceEEEe---ccchHHHHHHHHHhhcCchheeeccc
Confidence 4589999999999999999998 23445555555555444456666643
No 30
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=51.32 E-value=10 Score=25.96 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=36.6
Q ss_pred cCcCCcchHHHHHHHHhcCCceeEEeC-CC-----CCCCcchHHHHHHHHhcCc
Q 048215 16 GEDTLDDFTSHLYSALSRQNIQTFIDD-QL-----NRGYEISESLVKAIKASAI 63 (305)
Q Consensus 16 ~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~-----~~g~~~~~~i~~ai~~s~~ 63 (305)
-.|+|.+=+-.|.+.|..+|+.+...| -. ..+..+...+.++++.|++
T Consensus 29 ~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDi 82 (108)
T d1dlja3 29 SDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANI 82 (108)
T ss_dssp CSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSE
T ss_pred CcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCE
Confidence 357799989899999999999988766 32 2333445578899999994
No 31
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=47.51 E-value=2.3 Score=29.61 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=33.9
Q ss_pred CcchHHHHHHHHhcCCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCc
Q 048215 20 LDDFTSHLYSALSRQNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDY 72 (305)
Q Consensus 20 ~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y 72 (305)
-..++..|+..|...|+.+..|+ +...|..+ .++-..--=.++++.++-
T Consensus 19 ~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~----~~~~~~gvP~~iiIG~ke 68 (111)
T d1atia1 19 ITEYAKRLKARLLALGLGRVLYEDTGNIGKAY----RRHDEVGTPFAVTVDYDT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTCSSCEEECCCSCHHHHH----HHHHHTTCSEEEEECHHH
T ss_pred HHHHHHHHHhhhccccceeEeecCCCCHHHHH----HHHHHcCCCEEEEECcHH
Confidence 35689999999999999999998 54555444 444444444566666543
No 32
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=47.25 E-value=27 Score=24.92 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=43.1
Q ss_pred CCCCCcccEEecCCcCcCCcchHHHHHHHHhcCCceeEE--------eC-CC-----CCCCcchHHHHHHHHhcCcEEEE
Q 048215 2 RSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFI--------DD-QL-----NRGYEISESLVKAIKASAISVII 67 (305)
Q Consensus 2 ~s~~~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~--------d~-~~-----~~g~~~~~~i~~ai~~s~~~ivv 67 (305)
++.+.+=.||||-+..| +..|+ .+.+.|.+.|++.|- .+ .+ .+...-.|.+.+.|++-++.+||
T Consensus 2 ~~lp~~G~v~iSv~d~d-K~~~~-~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~ki~~~~p~i~d~i~~gkidlVI 79 (138)
T d1a9xa2 2 STMKKHGRALLSVREGD-KERVV-DLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYII 79 (138)
T ss_dssp CCCCSSSEEEEECCGGG-GTTHH-HHHHHHHHTTCEEEECHHHHHHHHTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEE
T ss_pred CCCCCCCEEEEEEehhh-hhHHH-HHHHHHHHCCCEEEecCchHHHHHHhccccccccccccccccHhHHHhcCCeEEEE
Confidence 45566678999999888 45565 778888888888765 11 11 11111124566777777777666
Q ss_pred eecC
Q 048215 68 FSED 71 (305)
Q Consensus 68 ~S~~ 71 (305)
-.++
T Consensus 80 Nt~~ 83 (138)
T d1a9xa2 80 NTTS 83 (138)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 6544
No 33
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=46.09 E-value=9.3 Score=24.52 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=30.6
Q ss_pred HHHhcCCce-eEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecCcccc
Q 048215 29 SALSRQNIQ-TFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASS 75 (305)
Q Consensus 29 ~~L~~~gi~-~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S 75 (305)
..|+-.|+. +|.- ...++..+.+.+..++.+++|++++++++..
T Consensus 11 ~GF~LaGi~~~~~v---~~~ee~~~~i~~~~~~~digII~Ite~~a~~ 55 (76)
T d2i4ra1 11 IGFMLAGISDIYEV---TSDEEIVKAVEDVLKRDDVGVVIMKQEYLKK 55 (76)
T ss_dssp HHHHHTTCCCEEEC---CSHHHHHHHHHHHHHCSSEEEEEEEGGGSTT
T ss_pred HHHHHhCCCccccC---CCHHHHHHHHHHHhcCCCeEEEEEeHHHHHH
Confidence 345667884 5542 2234555666666778899999999999874
No 34
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.65 E-value=12 Score=26.22 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=40.8
Q ss_pred cccEEecCCcC--cCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeec
Q 048215 7 KYDVFVSFRGE--DTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSE 70 (305)
Q Consensus 7 ~~dVFis~~~~--D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~ 70 (305)
-|+|-|---+. +.-..++..|++.|+..||.++.+..-.++..++..+.+|-..--=.++|+.+
T Consensus 12 P~qV~Ii~~~~~~~e~~~~a~~l~~~L~~~gi~v~~~~~D~~~~~lg~k~~~a~~~giP~~iiiG~ 77 (127)
T d1g5ha1 12 PIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTE 77 (127)
T ss_dssp SCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHHHhcCceeeeeecCCCcCHHHHHHHHHHhCCcEEEEEcC
Confidence 46666653322 22245788999999999999986542224556666666666655556666664
No 35
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}
Probab=40.77 E-value=16 Score=26.78 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=49.7
Q ss_pred CcccEEec---CCcCcCCcchHHHHHHHHhcC----CceeEE--eCC---CCCCC------------cchHHHHHHHHhc
Q 048215 6 KKYDVFVS---FRGEDTLDDFTSHLYSALSRQ----NIQTFI--DDQ---LNRGY------------EISESLVKAIKAS 61 (305)
Q Consensus 6 ~~~dVFis---~~~~D~~~~f~~~L~~~L~~~----gi~~f~--d~~---~~~g~------------~~~~~i~~ai~~s 61 (305)
++..|||. |+..+ ..+...+.++|++. |..+|. |+. ...+. .|-..=.++|++|
T Consensus 1 p~k~IYlAgP~F~~~q--~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~a 78 (156)
T d1f8ya_ 1 PKKTIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTN 78 (156)
T ss_dssp CCBCEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCCCCHHH--HHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHC
Confidence 45678876 33333 55788999999874 555554 221 11111 1334457889999
Q ss_pred CcEEEEeecCcccchhhHHHHHHHHHH
Q 048215 62 AISVIIFSEDYASSRWCLDELAEILEC 88 (305)
Q Consensus 62 ~~~ivv~S~~y~~S~~cl~EL~~i~e~ 88 (305)
++.|.+|...... .-+.-|+-.....
T Consensus 79 D~via~ldg~~~D-~Gta~EiG~A~a~ 104 (156)
T d1f8ya_ 79 DIMLGVYIPDEED-VGLGMELGYALSQ 104 (156)
T ss_dssp SEEEEECCGGGCC-HHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCC-CCHHHHHHHHHHc
Confidence 9999999866554 4455677655553
No 36
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=39.75 E-value=9 Score=27.23 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=36.3
Q ss_pred CcCCcchHHHHHHHHhcCCceeEEeC-CCC----CC--------------CcchHHHHHHHHhcCcEEEE
Q 048215 17 EDTLDDFTSHLYSALSRQNIQTFIDD-QLN----RG--------------YEISESLVKAIKASAISVII 67 (305)
Q Consensus 17 ~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~----~g--------------~~~~~~i~~ai~~s~~~ivv 67 (305)
.|+|.+-+-.|.+.|..+|..+...| -+. .+ -..-+.+.+++++|++.|+.
T Consensus 28 ~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~ivi~ 97 (136)
T d1mv8a3 28 DDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLG 97 (136)
T ss_dssp CCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEEC
T ss_pred cchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceEEEEE
Confidence 57899999999999999999998876 211 11 11123567888999866553
No 37
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.10 E-value=52 Score=23.72 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHHhcCCceeEEeCCCCCCCcc-hHHHHHHHHhcCcEEEEeecCcccchhhHHHHHHHHHHh
Q 048215 26 HLYSALSRQNIQTFIDDQLNRGYEI-SESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECK 89 (305)
Q Consensus 26 ~L~~~L~~~gi~~f~d~~~~~g~~~-~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~EL~~i~e~~ 89 (305)
-+...|+..|+.++. -|-.. .+++.+++.+.+.-+|-+|--+.++.--+.++.+.++..
T Consensus 25 iv~~~l~~~G~~Vi~-----LG~~~p~e~~~~~~~~~~~d~i~lS~l~~~~~~~~~~~~~~l~~~ 84 (156)
T d3bula2 25 IVGVVLQCNNYEIVD-----LGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ 84 (156)
T ss_dssp HHHHHHHTTTCEEEE-----CCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEE-----CCCCCCHHHHHHHHHhhCCCEEEEecccccchHHHHHHHHHHHhc
Confidence 344578899999876 45433 357999999999999999988888766666665555544
No 38
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}
Probab=37.32 E-value=13 Score=29.59 Aligned_cols=53 Identities=19% Similarity=0.060 Sum_probs=35.6
Q ss_pred cCCceeEEeccCC---CHHHHHHHHhcCCCCCCCcEEEEEcCChHHHHhcCCCceEEc
Q 048215 221 SCMKVLIVFDDVT---CFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEM 275 (305)
Q Consensus 221 ~~kr~LlVLDdv~---~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~v 275 (305)
..+.-++++|.++ ++.....+...+....+.+.|||||.++.++..+ +..|.|
T Consensus 239 ~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~--d~~~~v 294 (308)
T d1e69a_ 239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAA--DLLHGV 294 (308)
T ss_dssp TSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGC--SEEEEE
T ss_pred hccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhc--ccEEEE
Confidence 3455688889997 4444455544444445678999999999988765 344443
No 39
>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]}
Probab=35.48 E-value=24 Score=23.82 Aligned_cols=45 Identities=7% Similarity=0.113 Sum_probs=32.5
Q ss_pred HHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecCcccc
Q 048215 28 YSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASS 75 (305)
Q Consensus 28 ~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S 75 (305)
...|+-.|+.+|... ..++....+.+...+..++|++++++++..
T Consensus 10 v~GFrLaGi~~~~v~---~~ee~~~~l~~l~~~~d~gII~Ite~~~~~ 54 (104)
T d2d00a1 10 AQGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLPD 54 (104)
T ss_dssp HHHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCSC
T ss_pred HHHHHHcCCeeecCC---CHHHHHHHHHHHHhCCCeEEEEEcHHHHHh
Confidence 345677899888732 234444556666678899999999999884
No 40
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=35.37 E-value=76 Score=23.13 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=57.9
Q ss_pred CCcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhHHHHHH
Q 048215 5 TKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAE 84 (305)
Q Consensus 5 ~~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~EL~~ 84 (305)
..++-||+.=-|.|....=..-+...|+..|+.+.. + ....-.+++.++..+.+.-+|.+|.-.....--+.+|.+
T Consensus 35 gr~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~---l-g~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~ 110 (168)
T d7reqa2 35 GRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDV---G-PLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRK 110 (168)
T ss_dssp SSCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEE---C-CTTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceec---C-CCcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHH
Confidence 345679999889887544445566789999998855 1 234445789999999999999999776665555556655
Q ss_pred HHHHh
Q 048215 85 ILECK 89 (305)
Q Consensus 85 i~e~~ 89 (305)
.++..
T Consensus 111 ~L~~~ 115 (168)
T d7reqa2 111 ELDKL 115 (168)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 55544
No 41
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]}
Probab=34.94 E-value=4.5 Score=28.73 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=31.2
Q ss_pred chHHHHHHHHhcCCceeEEeC-C-CCCCCcchHHHHHHHHhcCcEEEEeecCccc
Q 048215 22 DFTSHLYSALSRQNIQTFIDD-Q-LNRGYEISESLVKAIKASAISVIIFSEDYAS 74 (305)
Q Consensus 22 ~f~~~L~~~L~~~gi~~f~d~-~-~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~ 74 (305)
.++..|+..|...||.+++|+ . ...|..+ .+|-..--=.++|+.++...
T Consensus 30 ~~a~~i~~~L~~~girv~~Dd~~~~~~g~K~----~~a~~~giP~~iiiG~~e~~ 80 (127)
T d1hc7a1 30 EAAQGLRQALLAQGLRVHLDDRDQHTPGYKF----HEWELKGVPFRVELGPKDLE 80 (127)
T ss_dssp HHHHHHHHHHHHTTCCEEECCCSSSCHHHHH----HHHHHTTCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHcCCeeEEecccchhHHHHH----HHHHhhcCCeeEEechhhhc
Confidence 589999999999999999997 2 2234443 33332222256666654433
No 42
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.87 E-value=45 Score=25.27 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=35.2
Q ss_pred CCceeEEeccCCCH-----HHHHHHHhcCCCCCCCcEEEEEc--CChHHHHhc-CCCceEEcCCCChHHHHHHHHHh
Q 048215 222 CMKVLIVFDDVTCF-----SQLESIIGSLDWLMPVSRTIITT--RNKQVLRNW-GVRKICEMEALEYHHALELFSRH 290 (305)
Q Consensus 222 ~kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gsrIIiTT--R~~~v~~~~-~~~~~~~v~~L~~~ea~~Lf~~~ 290 (305)
.+..++++|++... ..+..+..... .....+|+|+ ......... .....+++++++.++-...+.+-
T Consensus 122 ~~~~vi~ide~~~~~~~~~~~~~~~~~~~~--~~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i 196 (253)
T d1sxja2 122 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 196 (253)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHH
T ss_pred ccceEEEeeeccccccchhhhhHHHhhhhc--ccccccccccccccccccccccceeeeeeccccchhHHHHHHHHH
Confidence 45678889987621 12333332111 1222344443 232233222 23467899999998888776653
No 43
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}
Probab=32.94 E-value=53 Score=24.25 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=38.4
Q ss_pred cchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecC--cccchhhHHHHH
Q 048215 21 DDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSED--YASSRWCLDELA 83 (305)
Q Consensus 21 ~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~--y~~S~~cl~EL~ 83 (305)
.+|+..|...|++.|..+-.- +.+...+...+.+...+..++++|+. ......+..++.
T Consensus 10 DSFt~ni~~~l~~lG~~~~v~----~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~~~~~~i~ 70 (192)
T d1i7qb_ 10 DSFTYNLVDQLRASGHQVVIY----RNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELL 70 (192)
T ss_dssp CSSHHHHHHHHHHTTCEEEEE----ETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGSTTHHHHH
T ss_pred CcHHHHHHHHHHHCCCeEEEE----eCCCcccccHHHHHhcCCCeEEecCccccccccccchhhH
Confidence 479999999999999875441 12222344566788888899999954 333444444433
No 44
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}
Probab=31.60 E-value=12 Score=28.23 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=24.7
Q ss_pred EecCCcCcC--CcchHHHHHHHHhcCCceeE
Q 048215 11 FVSFRGEDT--LDDFTSHLYSALSRQNIQTF 39 (305)
Q Consensus 11 Fis~~~~D~--~~~f~~~L~~~L~~~gi~~f 39 (305)
||++-|.|. ..+.+..|.+.|..+|+..+
T Consensus 4 fIviEG~dGsGKsT~~~~L~~~L~~~g~~~~ 34 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVETLEQLGIRDM 34 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 899999997 47899999999999998643
No 45
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=31.50 E-value=34 Score=22.23 Aligned_cols=59 Identities=17% Similarity=0.048 Sum_probs=38.4
Q ss_pred CcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEee
Q 048215 6 KKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFS 69 (305)
Q Consensus 6 ~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S 69 (305)
..+||||---+++ ....+-.|.+.|+ +|+++.+|. .+..+...+..|-..=--+++|+-
T Consensus 2 ~~pdv~iv~~~~~-~~~~a~~i~~~LR-~~~~~~~~~---~~~~l~kq~k~A~~~~~~~~iiiG 60 (96)
T d1h4vb1 2 KGPDLYLIPLTEE-AVAEAFYLAEALR-PRLRAEYAL---APRKPAKGLEEALKRGAAFAGFLG 60 (96)
T ss_dssp CCCSEEEEESSHH-HHHHHHHHHHHHT-TTSCEEECS---SCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEEEcCHH-HHHHHHHHHHHHH-cCceEEEEC---CCCCHHHHHHHHHHcCCCEEEEec
Confidence 4578988876665 3456778889995 699987764 345676666666553333444444
No 46
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=30.74 E-value=18 Score=27.37 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=37.7
Q ss_pred CCceeEEeccCC--CHHHHHHHHhcCCCCCCCcEEEEEcCChH-HHHhcCC-CceEEcCCCC
Q 048215 222 CMKVLIVFDDVT--CFSQLESIIGSLDWLMPVSRTIITTRNKQ-VLRNWGV-RKICEMEALE 279 (305)
Q Consensus 222 ~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~-~~~~~v~~L~ 279 (305)
+++=++|+|++. +.+.+.+|...+..-.+++.+|+||.+.+ ++...-. -..+.++...
T Consensus 78 ~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p~ 139 (198)
T d2gnoa2 78 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPK 139 (198)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCH
T ss_pred CCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCch
Confidence 444578899997 56778888888777778888877777653 3332211 2356665443
No 47
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=28.14 E-value=90 Score=21.73 Aligned_cols=69 Identities=9% Similarity=0.126 Sum_probs=42.3
Q ss_pred CcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHh----cCcEEEEeecCcccchhhHHH
Q 048215 6 KKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKA----SAISVIIFSEDYASSRWCLDE 81 (305)
Q Consensus 6 ~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~----s~~~ivv~S~~y~~S~~cl~E 81 (305)
...||.|-|+.++ .+..++..++ +.|+++-. .---++++=.+.|++ ++-.=++++|||.-----+..
T Consensus 43 ~~~DvvIDFS~p~---~~~~~~~~~~-~~~~~~Vi-----GTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~~ 113 (135)
T d1yl7a1 43 GNTEVVIDFTHPD---VVMGNLEFLI-DNGIHAVV-----GTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVLL 113 (135)
T ss_dssp TTCSEEEECCCTT---THHHHHHHHH-HTTCEEEE-----CCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHHH
T ss_pred ccCCEEEEcccHH---HHHHHHHHHH-hcCCCEEE-----eccccchhHHHHHHHHHHhcCCCCEEEcCCccHHHHHHHH
Confidence 4679999999887 3444555444 66777644 112344444455554 666667889999775444444
Q ss_pred HH
Q 048215 82 LA 83 (305)
Q Consensus 82 L~ 83 (305)
|+
T Consensus 114 l~ 115 (135)
T d1yl7a1 114 AV 115 (135)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 48
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]}
Probab=26.18 E-value=18 Score=29.57 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=28.6
Q ss_pred CcccEEecCCcCcCCcchHHHHHHHHhcCCcee
Q 048215 6 KKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQT 38 (305)
Q Consensus 6 ~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~ 38 (305)
..|.+.+|||.-+|..+|+.+|.-++.-.-|++
T Consensus 225 ~g~~~iiShRSGETeD~~iaDLAVg~~a~~iK~ 257 (291)
T d2ptza1 225 NGWSVMVSHRSGETEDTYIADLVVALGSGQIKT 257 (291)
T ss_dssp TTCEEEEECCSBCCSCCHHHHHHHHHTCSEEEC
T ss_pred cCeeEEeeCCCCCcCcchHHHHHHHhCCCceec
Confidence 457899999999999999999999998766654
No 49
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.16 E-value=18 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=26.1
Q ss_pred EEecCCcCcC--CcchHHHHHHHHhcCCceeEE
Q 048215 10 VFVSFRGEDT--LDDFTSHLYSALSRQNIQTFI 40 (305)
Q Consensus 10 VFis~~~~D~--~~~f~~~L~~~L~~~gi~~f~ 40 (305)
.||++.|.|. ..+-+..|.+.|+.+|+++..
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~ 36 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 36 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 5899999997 467889999999999997644
No 50
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=25.82 E-value=69 Score=24.66 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=38.6
Q ss_pred cCCceeEEeccCCC------------HHHHHHHHhcCCCC-CCCcE--EEEEcCChHHHHhcCC----CceEEcCCCCh-
Q 048215 221 SCMKVLIVFDDVTC------------FSQLESIIGSLDWL-MPVSR--TIITTRNKQVLRNWGV----RKICEMEALEY- 280 (305)
Q Consensus 221 ~~kr~LlVLDdv~~------------~~~~~~l~~~~~~~-~~gsr--IIiTTR~~~v~~~~~~----~~~~~v~~L~~- 280 (305)
+....+|+||+++. ...+..+...+... ..+++ ||-||...+.+..... ...+.++.+..
T Consensus 98 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r 177 (246)
T d1d2na_ 98 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 177 (246)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCccceEEecCCchhH
Confidence 45578999999852 12233343333322 24444 4558888877764322 44567766643
Q ss_pred HHHHHHHHHh
Q 048215 281 HHALELFSRH 290 (305)
Q Consensus 281 ~ea~~Lf~~~ 290 (305)
++-++++...
T Consensus 178 ~~il~~l~~~ 187 (246)
T d1d2na_ 178 EQLLEALELL 187 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4555555544
No 51
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=25.60 E-value=60 Score=24.12 Aligned_cols=83 Identities=7% Similarity=0.117 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhHHHHHHHHHHhhccc-eE--------
Q 048215 25 SHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECKKEHA-QI-------- 95 (305)
Q Consensus 25 ~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~EL~~i~e~~~~~~-~v-------- 95 (305)
..|.+.|++.|+..++ ..|+.. +.+.+-+++-.+.-|.++..|.. |-..+-..+.+..+..+ .+
T Consensus 58 ~~L~~~L~~~g~~L~i----~~G~~~-~~l~~l~~~~~i~~v~~~~~~~~--~~~~rd~~i~~~~~~~~i~~~~~~~~~L 130 (202)
T d1owla2 58 QELQQRYQQAGSRLLL----LQGDPQ-HLIPQLAQQLQAEAVYWNQDIEP--YGRDRDGQVAAALKTAGIRAVQLWDQLL 130 (202)
T ss_dssp HHHHHHHHHHTSCEEE----EESCHH-HHHHHHHHHTTCSEEEEECCCSH--HHHHHHHHHHHHHHHTTCEEEEECCSSS
T ss_pred HHHHHhhhccccceEE----EEeeee-ccchhhccccccceeEEeeeccc--hhhhHHHHHhhhhhhccccccccccccc
Confidence 4567778888988766 356665 56667777888889999999974 33333333433322222 22
Q ss_pred ----EEEeCCCCchHHHHHHHHH
Q 048215 96 ----YVRNQTGSFGDSFSKLEER 114 (305)
Q Consensus 96 ----~Vr~q~g~f~~af~~~~~~ 114 (305)
+|....|..-+.|..+.++
T Consensus 131 ~~p~~v~~~~g~~~~vFTpF~k~ 153 (202)
T d1owla2 131 HSPDQILSGSGNPYSVYGPFWKN 153 (202)
T ss_dssp SCTTTCCCTTSCCCSSHHHHHHH
T ss_pred cCcccccCCCCCchhhhHHHHHH
Confidence 4556666666666555444
No 52
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=24.88 E-value=57 Score=24.20 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhHHHHHHHHH
Q 048215 24 TSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILE 87 (305)
Q Consensus 24 ~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~EL~~i~e 87 (305)
...|.+.|++.|+...+ ..|+.. +.+.+-+++-.+.-|.++..|.. +..+.-..+.+
T Consensus 67 L~~L~~~L~~~g~~L~v----~~G~~~-~~l~~l~~~~~i~~V~~n~~~~~--~e~~rd~~v~~ 123 (204)
T d1np7a2 67 VQNLAESLQKVGNKLLV----TTGLPE-QVIPQIAKQINAKTIYYHREVTQ--EELDVERNLVK 123 (204)
T ss_dssp HHHHHHHHHHTTCCEEE----EESCHH-HHHHHHHHHTTEEEEEEECCCSH--HHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhh----hhhhhH-HHHHHHHHHhhhhheeeeccccH--HHHHHHHHHhh
Confidence 45677788888987655 356654 56777788888888888888874 44444444444
No 53
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=24.84 E-value=53 Score=22.46 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=31.2
Q ss_pred chHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecC
Q 048215 22 DFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSED 71 (305)
Q Consensus 22 ~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~ 71 (305)
.++..|++.| +.|+.+..|+ +.+.++..+.++-..---.++|+.++
T Consensus 30 ~~a~~l~~~L-~~~i~v~~D~---~~~~~g~k~~~a~~~giP~~iiiG~k 75 (126)
T d1nj8a1 30 EKAKEIYEKL-KGKFRVHIDD---RDIRPGRKFNDWEIKGVPLRIEVGPK 75 (126)
T ss_dssp HHHHHHHHHH-HTTSCEEECC---SCSCHHHHHHHHHHTTCSEEEEECHH
T ss_pred HHHHHHHHHh-ccceeEEeec---ccchHHHHHHHHHHHHHHHHHhcccc
Confidence 4788999999 4699999987 23344455555555455567777744
No 54
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Probab=24.47 E-value=20 Score=29.29 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=28.4
Q ss_pred CcccEEecCCcCcCCcchHHHHHHHHhcCCcee
Q 048215 6 KKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQT 38 (305)
Q Consensus 6 ~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~ 38 (305)
..|.+.+|||.-+|..+|+.+|.-++.-.-|++
T Consensus 223 ~g~~~ivShRsGETeD~~iaDLAVg~~a~~iK~ 255 (294)
T d2akza1 223 NGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 255 (294)
T ss_dssp TTCEEEEECCSBCCSCCHHHHHHHHHTCSEEEC
T ss_pred cCCcEEeeCCCCCcCcchHhHHHHhcCCCeeee
Confidence 457899999999999999999999997665654
No 55
>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.17 E-value=52 Score=28.12 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=11.0
Q ss_pred HhhccCCCCceEeCC-Cc
Q 048215 187 SLLSVESKDVYALGF-GA 203 (305)
Q Consensus 187 ~~L~~~~~~v~ivGi-G~ 203 (305)
+.+....+.|-+||| |+
T Consensus 65 ~~i~~~~~~vV~iGIGGS 82 (442)
T d1c7qa_ 65 ERIRNHSDALVVIGIGGS 82 (442)
T ss_dssp HHHHHHCSEEEEECCGGG
T ss_pred HHHHhcCCEEEEEeccHH
Confidence 334444456889999 84
No 56
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=21.78 E-value=46 Score=23.41 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCceeEEeCCCCCCC-cchHHHHHHHHhcCcEEEEeecCcccchhhHHHHHHHHHHh
Q 048215 25 SHLYSALSRQNIQTFIDDQLNRGY-EISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECK 89 (305)
Q Consensus 25 ~~L~~~L~~~gi~~f~d~~~~~g~-~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~EL~~i~e~~ 89 (305)
.-+...|+..|+.+.. -|- .-.+++.+++.+.+.-+|.+|--...+.--+.++...++..
T Consensus 21 ~mva~~l~~~G~~V~~-----LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~~~~~~~~~~~l~~~ 81 (137)
T d1ccwa_ 21 KILDHAFTNAGFNVVN-----IGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEA 81 (137)
T ss_dssp HHHHHHHHHTTCEEEE-----EEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHT
T ss_pred HHHHHHHHHCCCeEEe-----cccccCHHHHHHHHHhcCCCEEEEeeccccchHHHHHHHHHHHHh
Confidence 3455688999999876 453 33468999999999999999988887755556665555433
No 57
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.65 E-value=21 Score=28.30 Aligned_cols=53 Identities=9% Similarity=0.206 Sum_probs=32.2
Q ss_pred cCCceeEEeccCC---CHHHHHHHHhcCCCC-CCCcEEEEEcCChHHHHhcCCCceEEc
Q 048215 221 SCMKVLIVFDDVT---CFSQLESIIGSLDWL-MPVSRTIITTRNKQVLRNWGVRKICEM 275 (305)
Q Consensus 221 ~~kr~LlVLDdv~---~~~~~~~l~~~~~~~-~~gsrIIiTTR~~~v~~~~~~~~~~~v 275 (305)
..+.-+++||+.. ++.....+...+... ..+..|||||.+..+...+ +.++.|
T Consensus 300 ~~~~~illiDEpe~~Lh~~~~~~l~~~l~~~~~~~~QviitTHs~~~~~~~--d~~~~v 356 (369)
T g1ii8.1 300 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA--DHVIRI 356 (369)
T ss_dssp HSSCSEEEEECCSSSSCSHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGTS--SEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEechHHHHHhC--CEEEEE
Confidence 3556689999986 333333333222222 2345899999999988764 344444
No 58
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=21.45 E-value=30 Score=24.80 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=26.5
Q ss_pred ceeEEeccCCCHHHHHHHHhcCCCCCCCcEEEEE
Q 048215 224 KVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIIT 257 (305)
Q Consensus 224 r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiT 257 (305)
.++||||+|.++.....+...-..+|-.. |+++
T Consensus 11 ~~~lvld~i~dP~NlGai~Rta~~fG~~~-v~~~ 43 (158)
T d1ipaa1 11 ALILVAVGLEKPGNLGAVLRSADAAGAEA-VLVA 43 (158)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCSE-EEEE
T ss_pred CEEEEEeCCCCCchHHHHHHHHHhhccch-hhhc
Confidence 58899999999999999988877777644 5544
No 59
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]}
Probab=21.37 E-value=19 Score=29.34 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=27.3
Q ss_pred CcccEEecCCcCcCCcchHHHHHHHHhcCCce
Q 048215 6 KKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQ 37 (305)
Q Consensus 6 ~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~ 37 (305)
..+.+.+|||.-+|..+|+.+|.-++.-.-|+
T Consensus 222 ~g~~~ivShRSGETeD~~iaDLAVg~ga~~iK 253 (292)
T d2fyma1 222 AGYTAVISHRSGETEDATIADLAVGTAAGQIK 253 (292)
T ss_dssp TTCEEEEECCSSCCSCCHHHHHHHHTTCEEEE
T ss_pred cCCeEeecCCCCCcccchHHHHHHHhCCCeee
Confidence 35779999999999999999999998755444
No 60
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=20.02 E-value=76 Score=22.83 Aligned_cols=60 Identities=23% Similarity=0.413 Sum_probs=31.3
Q ss_pred CcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhc-CcEEEEeecCccc
Q 048215 6 KKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKAS-AISVIIFSEDYAS 74 (305)
Q Consensus 6 ~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s-~~~ivv~S~~y~~ 74 (305)
..+||.|-|+.++ .+..++..++ +.|++.-.-- .| ++++-.+.|++. +-.=++++||+.-
T Consensus 70 ~~~DViIDFs~p~---~~~~~~~~a~-~~~~~~ViGT---TG--~~~~~~~~i~~~a~~ipi~~apN~Sl 130 (162)
T d1diha1 70 DDFDVFIDFTRPE---GTLNHLAFCR-QHGKGMVIGT---TG--FDEAGKQAIRDAAADIAIVFAANFSM 130 (162)
T ss_dssp TSCSEEEECSCHH---HHHHHHHHHH-HTTCEEEECC---CC--CCHHHHHHHHHHTTTSCEEECSCCCH
T ss_pred cccceEEEeccHH---HHHHHHHHHH-hccceeEEec---CC--CcHHHHHHHHHHcCCCCEEEEccccH
Confidence 4578999998876 3444554444 4566554411 12 223323334432 2222577888764
Done!