BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048216
         (654 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
 pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
 pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
 pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
          Length = 394

 Score = 30.0 bits (66), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 9/45 (20%)

Query: 288 FPVHFDICTKQLYQLWIAEGFIPDNNEAAAEKYLEQLINGGFVDA 332
           +  H ++C  QL         + + NEA  EKYL +LI+G ++ A
Sbjct: 97  YGAHSNLCINQL---------VRNGNEAQKEKYLPKLISGEYIGA 132


>pdb|3VUV|A Chain A, Crystal Structure Of The Merozoite Surface Protein Mspdbl2
           From P. Falciparum Bound To Zinc
          Length = 339

 Score = 28.9 bits (63), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 159 WVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMT 206
           W ++S+ Y+ D++ Y  IK + PS  L E   E    KK +   + +T
Sbjct: 290 WTEQSIKYNNDKINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFELT 337


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,785,488
Number of Sequences: 62578
Number of extensions: 678067
Number of successful extensions: 1270
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1267
Number of HSP's gapped (non-prelim): 6
length of query: 654
length of database: 14,973,337
effective HSP length: 105
effective length of query: 549
effective length of database: 8,402,647
effective search space: 4613053203
effective search space used: 4613053203
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)