Query 048216
Match_columns 654
No_of_seqs 496 out of 4265
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:30:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.7E-74 8E-79 652.9 36.3 612 11-651 60-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-50 5.6E-55 481.9 31.5 509 97-648 180-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.3E-34 1.1E-38 293.1 12.2 203 106-310 1-283 (287)
4 KOG0444 Cytoskeletal regulator 99.7 1.8E-20 3.9E-25 194.9 -7.4 229 398-647 102-377 (1255)
5 PLN00113 leucine-rich repeat r 99.7 5.3E-17 1.2E-21 194.6 14.4 198 445-652 155-376 (968)
6 PLN00113 leucine-rich repeat r 99.7 4.9E-17 1.1E-21 195.0 12.2 194 445-652 203-400 (968)
7 PLN03210 Resistant to P. syrin 99.6 8E-16 1.7E-20 185.4 13.6 227 398-647 633-945 (1153)
8 KOG0444 Cytoskeletal regulator 99.6 2E-17 4.4E-22 172.5 -4.1 251 376-653 54-313 (1255)
9 KOG4194 Membrane glycoprotein 99.5 3.5E-15 7.7E-20 155.2 0.1 228 398-642 172-426 (873)
10 KOG0617 Ras suppressor protein 99.4 7.1E-15 1.5E-19 130.6 -4.2 130 423-591 29-158 (264)
11 KOG0472 Leucine-rich repeat pr 99.4 3.1E-15 6.8E-20 149.3 -9.5 212 421-654 62-296 (565)
12 KOG0472 Leucine-rich repeat pr 99.3 1.6E-14 3.5E-19 144.2 -6.1 248 378-643 207-539 (565)
13 KOG4194 Membrane glycoprotein 99.2 1.2E-11 2.7E-16 129.1 6.5 231 398-651 77-335 (873)
14 PRK15370 E3 ubiquitin-protein 99.2 2.2E-11 4.8E-16 138.1 8.7 222 377-643 199-426 (754)
15 KOG0617 Ras suppressor protein 99.2 3.4E-13 7.3E-18 120.0 -5.5 152 398-571 32-185 (264)
16 PRK15387 E3 ubiquitin-protein 99.1 1.4E-10 3E-15 131.0 10.7 217 376-643 221-456 (788)
17 KOG0618 Serine/threonine phosp 99.1 8.9E-13 1.9E-17 144.6 -7.4 168 443-626 253-424 (1081)
18 KOG0618 Serine/threonine phosp 99.1 9.1E-12 2E-16 136.8 -0.2 237 377-639 219-504 (1081)
19 PRK15370 E3 ubiquitin-protein 99.1 9.5E-11 2.1E-15 133.0 7.2 225 380-652 181-407 (754)
20 PRK15387 E3 ubiquitin-protein 99.0 1.1E-09 2.3E-14 124.0 10.3 218 381-653 205-442 (788)
21 KOG4658 Apoptotic ATPase [Sign 98.9 2E-09 4.3E-14 124.4 8.7 238 393-650 516-788 (889)
22 KOG4237 Extracellular matrix p 98.8 6.3E-10 1.4E-14 111.7 0.5 236 392-642 60-356 (498)
23 cd00116 LRR_RI Leucine-rich re 98.8 6.1E-10 1.3E-14 116.1 -0.0 42 421-467 75-120 (319)
24 cd00116 LRR_RI Leucine-rich re 98.7 2.2E-09 4.7E-14 111.9 0.9 231 398-642 22-288 (319)
25 KOG3207 Beta-tubulin folding c 98.7 6E-09 1.3E-13 106.2 0.9 197 424-640 118-334 (505)
26 PRK00411 cdc6 cell division co 98.6 1.4E-07 3.1E-12 101.5 11.3 118 99-218 28-149 (394)
27 cd01128 rho_factor Transcripti 98.6 1.1E-07 2.4E-12 94.1 7.9 90 123-217 15-113 (249)
28 TIGR02928 orc1/cdc6 family rep 98.6 2.7E-07 5.9E-12 98.2 11.0 114 101-218 15-140 (365)
29 PRK04841 transcriptional regul 98.5 2.2E-06 4.8E-11 102.6 17.8 231 102-358 15-332 (903)
30 KOG4237 Extracellular matrix p 98.5 2.1E-08 4.5E-13 101.0 0.2 204 375-594 65-357 (498)
31 PRK09376 rho transcription ter 98.5 1.9E-07 4E-12 96.4 6.1 91 124-217 169-266 (416)
32 KOG2120 SCF ubiquitin ligase, 98.5 4E-09 8.7E-14 102.3 -6.0 183 399-619 185-374 (419)
33 KOG0532 Leucine-rich repeat (L 98.4 1.1E-08 2.5E-13 107.3 -3.7 176 392-593 89-270 (722)
34 PTZ00202 tuzin; Provisional 98.4 9.6E-06 2.1E-10 84.3 16.7 108 96-213 257-367 (550)
35 KOG1259 Nischarin, modulator o 98.4 5.6E-08 1.2E-12 94.4 -0.7 126 452-594 281-410 (490)
36 PF14580 LRR_9: Leucine-rich r 98.4 1.4E-07 3.1E-12 87.8 1.7 80 425-515 17-98 (175)
37 PF13401 AAA_22: AAA domain; P 98.3 7.3E-07 1.6E-11 79.7 5.4 88 123-216 3-96 (131)
38 PRK15386 type III secretion pr 98.3 2E-06 4.3E-11 89.8 9.0 136 423-592 48-186 (426)
39 PF13191 AAA_16: AAA ATPase do 98.3 1E-06 2.2E-11 83.8 5.8 46 102-147 1-47 (185)
40 TIGR03015 pepcterm_ATPase puta 98.2 7.4E-06 1.6E-10 83.2 11.6 89 124-218 43-134 (269)
41 TIGR00767 rho transcription te 98.2 2.5E-06 5.4E-11 88.6 7.9 93 123-217 167-265 (415)
42 COG4886 Leucine-rich repeat (L 98.2 8.4E-07 1.8E-11 95.5 4.6 83 427-518 116-199 (394)
43 COG4886 Leucine-rich repeat (L 98.2 9.7E-07 2.1E-11 95.0 4.5 171 398-594 115-288 (394)
44 KOG2120 SCF ubiquitin ligase, 98.2 5.4E-08 1.2E-12 94.6 -5.5 163 474-643 206-374 (419)
45 PRK00080 ruvB Holliday junctio 98.2 2.2E-05 4.8E-10 82.0 13.2 218 100-334 24-311 (328)
46 PF13855 LRR_8: Leucine rich r 98.2 8E-07 1.7E-11 67.8 1.6 56 427-486 1-57 (61)
47 TIGR00635 ruvB Holliday juncti 98.1 1.6E-05 3.5E-10 82.3 11.5 216 101-333 4-289 (305)
48 KOG3207 Beta-tubulin folding c 98.1 5.6E-07 1.2E-11 92.1 0.2 199 375-591 119-334 (505)
49 PF14580 LRR_9: Leucine-rich r 98.1 2.4E-06 5.1E-11 79.7 4.2 106 398-517 18-125 (175)
50 KOG0532 Leucine-rich repeat (L 98.1 1.7E-07 3.7E-12 98.7 -4.6 156 418-595 89-246 (722)
51 cd00009 AAA The AAA+ (ATPases 98.1 1.9E-05 4.1E-10 71.5 9.3 58 104-165 1-58 (151)
52 PF13855 LRR_8: Leucine rich r 98.0 2.4E-06 5.3E-11 65.1 1.7 61 399-467 1-61 (61)
53 PRK11331 5-methylcytosine-spec 98.0 4.9E-05 1.1E-09 80.5 11.8 107 101-219 175-284 (459)
54 KOG1259 Nischarin, modulator o 98.0 1.2E-06 2.7E-11 85.3 -0.4 129 424-571 281-411 (490)
55 PF01637 Arch_ATPase: Archaeal 97.9 1.4E-05 3.1E-10 78.9 6.4 59 103-165 1-59 (234)
56 COG1474 CDC6 Cdc6-related prot 97.9 5.7E-05 1.2E-09 79.3 10.5 111 102-218 18-134 (366)
57 KOG2982 Uncharacterized conser 97.9 3.1E-06 6.8E-11 82.6 0.8 190 424-625 68-266 (418)
58 KOG1909 Ran GTPase-activating 97.9 1.7E-06 3.8E-11 86.3 -1.5 239 398-643 29-309 (382)
59 PLN03150 hypothetical protein; 97.9 2.7E-05 5.9E-10 88.3 7.5 82 428-517 419-502 (623)
60 PF12799 LRR_4: Leucine Rich r 97.9 9E-06 2E-10 57.1 2.3 40 427-471 1-40 (44)
61 PLN03150 hypothetical protein; 97.8 3.9E-05 8.4E-10 87.1 7.9 59 421-484 436-496 (623)
62 PTZ00112 origin recognition co 97.8 9.4E-05 2E-09 83.1 10.5 115 100-217 754-879 (1164)
63 KOG2543 Origin recognition com 97.8 0.00015 3.2E-09 73.7 10.9 111 99-216 4-124 (438)
64 PRK15386 type III secretion pr 97.8 7.7E-05 1.7E-09 78.2 8.9 161 452-645 49-213 (426)
65 PF05729 NACHT: NACHT domain 97.7 9.6E-05 2.1E-09 68.7 7.3 83 125-217 1-91 (166)
66 COG2909 MalT ATP-dependent tra 97.7 0.0014 3E-08 73.4 16.5 229 111-360 25-340 (894)
67 PRK13342 recombination factor 97.6 9.6E-05 2.1E-09 79.7 6.7 45 101-147 12-59 (413)
68 KOG2982 Uncharacterized conser 97.6 1E-05 2.2E-10 79.1 -1.5 205 426-648 44-265 (418)
69 PRK08118 topology modulation p 97.6 3.7E-05 8E-10 71.8 2.3 35 125-159 2-37 (167)
70 KOG3665 ZYG-1-like serine/thre 97.4 7.5E-05 1.6E-09 84.7 2.6 112 398-518 147-263 (699)
71 KOG0531 Protein phosphatase 1, 97.4 2.9E-05 6.3E-10 84.0 -0.9 103 398-516 94-197 (414)
72 KOG1859 Leucine-rich repeat pr 97.3 8.7E-06 1.9E-10 88.3 -5.6 44 442-487 175-218 (1096)
73 PF04665 Pox_A32: Poxvirus A32 97.3 0.00049 1.1E-08 67.3 6.0 36 125-162 14-49 (241)
74 PF05621 TniB: Bacterial TniB 97.2 0.0022 4.9E-08 64.4 10.5 168 100-273 33-228 (302)
75 KOG3665 ZYG-1-like serine/thre 97.2 0.00026 5.7E-09 80.4 4.2 111 398-517 121-232 (699)
76 smart00382 AAA ATPases associa 97.2 0.00085 1.8E-08 59.9 6.8 86 125-218 3-89 (148)
77 PRK07261 topology modulation p 97.2 0.0013 2.8E-08 61.7 8.0 34 126-159 2-36 (171)
78 PF05496 RuvB_N: Holliday junc 97.2 0.00033 7.2E-09 67.1 3.7 53 100-154 23-78 (233)
79 PRK04195 replication factor C 97.2 0.0012 2.5E-08 72.9 8.5 47 101-147 14-62 (482)
80 KOG1909 Ran GTPase-activating 97.1 0.00015 3.1E-09 72.9 1.1 193 418-619 83-309 (382)
81 KOG2028 ATPase related to the 97.1 0.0011 2.4E-08 66.9 6.9 73 123-218 161-233 (554)
82 COG3899 Predicted ATPase [Gene 97.1 0.0056 1.2E-07 71.7 13.8 50 102-153 1-51 (849)
83 COG2256 MGS1 ATPase related to 97.1 0.0016 3.4E-08 67.1 8.0 69 123-218 47-115 (436)
84 PRK13341 recombination factor 97.1 0.0014 2.9E-08 75.0 8.3 50 101-154 28-80 (725)
85 PF13173 AAA_14: AAA domain 97.1 0.00065 1.4E-08 60.4 4.5 37 124-163 2-38 (128)
86 COG3903 Predicted ATPase [Gene 97.0 0.0014 3E-08 67.9 7.0 218 123-357 13-313 (414)
87 TIGR01242 26Sp45 26S proteasom 97.0 0.0012 2.6E-08 70.1 6.9 48 99-146 120-178 (364)
88 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0015 3.2E-08 65.2 6.7 92 123-216 68-172 (274)
89 TIGR02903 spore_lon_C ATP-depe 97.0 0.0028 6.1E-08 71.6 9.5 61 101-163 154-217 (615)
90 CHL00095 clpC Clp protease ATP 97.0 0.0019 4.2E-08 75.8 8.4 44 101-146 179-222 (821)
91 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.002 4.4E-08 63.4 7.2 52 106-161 22-73 (226)
92 PRK12377 putative replication 96.9 0.0037 8E-08 62.0 8.6 72 124-216 101-172 (248)
93 PRK12608 transcription termina 96.9 0.0028 6E-08 65.9 7.9 102 110-216 120-229 (380)
94 PF12799 LRR_4: Leucine Rich r 96.9 0.00056 1.2E-08 48.0 2.0 33 455-487 1-33 (44)
95 PRK06893 DNA replication initi 96.9 0.0025 5.4E-08 62.9 7.0 37 124-162 39-75 (229)
96 PRK07952 DNA replication prote 96.9 0.019 4.1E-07 56.8 13.2 88 109-216 84-171 (244)
97 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0012 2.5E-08 68.4 4.6 46 102-147 52-101 (361)
98 PRK12402 replication factor C 96.8 0.0031 6.6E-08 66.2 8.0 44 101-146 15-58 (337)
99 TIGR02639 ClpA ATP-dependent C 96.8 0.0031 6.8E-08 73.1 8.6 44 101-146 182-225 (731)
100 PF13207 AAA_17: AAA domain; P 96.8 0.00082 1.8E-08 58.9 3.0 21 126-146 1-21 (121)
101 PRK08116 hypothetical protein; 96.8 0.0059 1.3E-07 61.6 9.6 73 125-216 115-187 (268)
102 PRK03992 proteasome-activating 96.8 0.0031 6.8E-08 67.3 7.7 47 100-146 130-187 (389)
103 PF00004 AAA: ATPase family as 96.8 0.0014 3E-08 58.3 4.1 21 127-147 1-21 (132)
104 PRK05541 adenylylsulfate kinas 96.8 0.0024 5.2E-08 60.2 5.8 36 123-160 6-41 (176)
105 PRK09361 radB DNA repair and r 96.8 0.0048 1E-07 60.7 8.1 98 115-216 14-116 (225)
106 PRK06696 uridine kinase; Valid 96.7 0.0019 4.2E-08 63.4 5.3 42 105-146 2-44 (223)
107 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0054 1.2E-07 60.8 7.9 94 122-216 17-124 (235)
108 PRK10865 protein disaggregatio 96.7 0.0046 1E-07 72.6 8.4 44 101-146 178-221 (857)
109 KOG0531 Protein phosphatase 1, 96.7 0.00021 4.5E-09 77.4 -2.6 173 421-617 89-264 (414)
110 KOG2227 Pre-initiation complex 96.7 0.011 2.3E-07 62.1 10.0 115 99-217 148-266 (529)
111 PRK14957 DNA polymerase III su 96.6 0.0068 1.5E-07 66.9 9.0 46 100-146 15-60 (546)
112 PHA02544 44 clamp loader, smal 96.6 0.0074 1.6E-07 62.8 8.8 46 100-146 20-65 (316)
113 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0051 1.1E-07 72.1 8.2 44 101-146 187-230 (852)
114 TIGR03689 pup_AAA proteasome A 96.6 0.0046 9.9E-08 67.5 7.2 50 98-147 179-239 (512)
115 PRK05564 DNA polymerase III su 96.6 0.012 2.6E-07 61.1 10.1 77 101-179 4-85 (313)
116 PLN03025 replication factor C 96.6 0.0068 1.5E-07 63.1 8.2 44 101-146 13-56 (319)
117 PRK14963 DNA polymerase III su 96.6 0.001 2.2E-08 73.1 2.1 61 101-162 14-74 (504)
118 PHA00729 NTP-binding motif con 96.6 0.0056 1.2E-07 59.3 6.9 33 112-146 7-39 (226)
119 PRK14961 DNA polymerase III su 96.6 0.012 2.6E-07 62.3 10.0 46 100-146 15-60 (363)
120 PRK14949 DNA polymerase III su 96.5 0.0092 2E-07 68.5 9.1 46 100-146 15-60 (944)
121 KOG1859 Leucine-rich repeat pr 96.5 8.3E-05 1.8E-09 81.0 -7.0 107 398-518 186-292 (1096)
122 PRK07667 uridine kinase; Provi 96.5 0.0038 8.2E-08 59.8 5.0 37 110-146 3-39 (193)
123 cd01393 recA_like RecA is a b 96.4 0.018 4E-07 56.6 9.8 97 115-216 10-123 (226)
124 PRK14962 DNA polymerase III su 96.4 0.014 3E-07 63.7 9.6 46 100-146 13-58 (472)
125 TIGR03346 chaperone_ClpB ATP-d 96.4 0.0091 2E-07 70.4 8.4 44 101-146 173-216 (852)
126 TIGR02237 recomb_radB DNA repa 96.4 0.0096 2.1E-07 57.8 7.3 89 122-216 10-106 (209)
127 COG2255 RuvB Holliday junction 96.3 0.0039 8.5E-08 61.3 4.1 47 100-146 25-74 (332)
128 PRK15455 PrkA family serine pr 96.3 0.0043 9.3E-08 67.6 4.8 45 102-146 77-125 (644)
129 KOG4341 F-box protein containi 96.3 0.00035 7.5E-09 71.8 -3.3 140 503-647 292-441 (483)
130 PRK00440 rfc replication facto 96.3 0.018 3.9E-07 59.8 9.4 45 101-147 17-61 (319)
131 PRK14960 DNA polymerase III su 96.3 0.017 3.7E-07 64.3 9.3 46 100-146 14-59 (702)
132 COG0466 Lon ATP-dependent Lon 96.3 0.0044 9.6E-08 68.3 4.8 68 99-171 321-392 (782)
133 PRK14088 dnaA chromosomal repl 96.3 0.017 3.6E-07 62.8 9.2 74 124-218 130-205 (440)
134 COG0572 Udk Uridine kinase [Nu 96.2 0.0089 1.9E-07 57.3 5.8 25 122-146 6-30 (218)
135 PRK00149 dnaA chromosomal repl 96.2 0.018 3.9E-07 63.0 9.1 94 103-218 125-222 (450)
136 CHL00181 cbbX CbbX; Provisiona 96.2 0.02 4.3E-07 58.4 8.7 45 102-146 24-81 (287)
137 PRK11034 clpA ATP-dependent Cl 96.2 0.012 2.6E-07 67.7 7.9 44 101-146 186-229 (758)
138 COG1618 Predicted nucleotide k 96.2 0.0043 9.3E-08 55.8 3.2 34 125-160 6-40 (179)
139 PF05673 DUF815: Protein of un 96.2 0.014 2.9E-07 57.0 6.9 48 98-146 24-74 (249)
140 TIGR00362 DnaA chromosomal rep 96.2 0.017 3.7E-07 62.3 8.5 73 124-218 136-210 (405)
141 PF00485 PRK: Phosphoribulokin 96.1 0.017 3.7E-07 55.4 7.6 81 126-211 1-87 (194)
142 PRK14958 DNA polymerase III su 96.1 0.023 5E-07 62.6 9.5 46 100-146 15-60 (509)
143 PF00448 SRP54: SRP54-type pro 96.1 0.0086 1.9E-07 57.3 5.4 56 124-182 1-58 (196)
144 PRK09270 nucleoside triphospha 96.1 0.019 4.2E-07 56.6 7.9 26 121-146 30-55 (229)
145 PTZ00361 26 proteosome regulat 96.1 0.015 3.3E-07 62.5 7.7 52 101-154 183-245 (438)
146 PF00308 Bac_DnaA: Bacterial d 96.1 0.022 4.8E-07 55.7 8.2 94 103-218 11-108 (219)
147 PRK08727 hypothetical protein; 96.1 0.015 3.3E-07 57.5 7.1 36 124-161 41-76 (233)
148 PTZ00454 26S protease regulato 96.1 0.025 5.3E-07 60.4 9.1 47 101-147 145-202 (398)
149 PRK14087 dnaA chromosomal repl 96.0 0.019 4.2E-07 62.4 8.3 76 124-217 141-216 (450)
150 TIGR00602 rad24 checkpoint pro 96.0 0.0081 1.8E-07 67.4 5.4 48 99-146 82-132 (637)
151 PTZ00301 uridine kinase; Provi 96.0 0.0071 1.5E-07 58.5 4.3 29 124-154 3-31 (210)
152 PRK07003 DNA polymerase III su 96.0 0.03 6.6E-07 63.2 9.5 46 100-146 15-60 (830)
153 cd01120 RecA-like_NTPases RecA 95.9 0.026 5.6E-07 51.9 7.7 40 126-167 1-40 (165)
154 KOG2004 Mitochondrial ATP-depe 95.9 0.014 3E-07 64.3 6.3 102 98-218 408-516 (906)
155 cd01394 radB RadB. The archaea 95.9 0.033 7.1E-07 54.5 8.6 51 115-167 10-60 (218)
156 PF13238 AAA_18: AAA domain; P 95.9 0.0055 1.2E-07 54.1 2.8 20 127-146 1-20 (129)
157 PRK08181 transposase; Validate 95.9 0.02 4.3E-07 57.6 7.0 70 125-216 107-176 (269)
158 TIGR02880 cbbX_cfxQ probable R 95.9 0.033 7.1E-07 56.8 8.8 45 102-146 23-80 (284)
159 COG5238 RNA1 Ran GTPase-activa 95.9 0.0019 4.1E-08 62.8 -0.3 240 398-647 29-317 (388)
160 PRK14969 DNA polymerase III su 95.9 0.039 8.6E-07 61.2 10.0 46 100-146 15-60 (527)
161 PRK08691 DNA polymerase III su 95.9 0.037 8.1E-07 62.2 9.7 46 100-146 15-60 (709)
162 PF00560 LRR_1: Leucine Rich R 95.9 0.0031 6.7E-08 36.9 0.7 21 456-476 1-21 (22)
163 PRK08084 DNA replication initi 95.9 0.026 5.7E-07 55.8 7.8 58 101-162 23-81 (235)
164 PRK06645 DNA polymerase III su 95.9 0.042 9E-07 60.4 9.8 46 100-146 20-65 (507)
165 KOG4579 Leucine-rich repeat (L 95.8 0.0023 5.1E-08 55.9 0.1 63 418-485 68-130 (177)
166 PRK12323 DNA polymerase III su 95.8 0.04 8.6E-07 61.4 9.5 46 100-146 15-60 (700)
167 PRK06526 transposase; Provisio 95.8 0.016 3.4E-07 58.0 6.0 24 124-147 98-121 (254)
168 PRK09183 transposase/IS protei 95.8 0.024 5.3E-07 56.9 7.3 22 125-146 103-124 (259)
169 PRK05480 uridine/cytidine kina 95.8 0.0078 1.7E-07 58.5 3.6 24 123-146 5-28 (209)
170 KOG4579 Leucine-rich repeat (L 95.8 0.003 6.6E-08 55.2 0.6 92 421-520 47-138 (177)
171 TIGR00235 udk uridine kinase. 95.8 0.0075 1.6E-07 58.5 3.4 25 122-146 4-28 (207)
172 PRK14956 DNA polymerase III su 95.8 0.02 4.2E-07 61.8 6.8 46 100-146 17-62 (484)
173 PRK08233 hypothetical protein; 95.8 0.0076 1.6E-07 57.0 3.3 23 124-146 3-25 (182)
174 TIGR03499 FlhF flagellar biosy 95.8 0.028 6.2E-07 57.2 7.7 24 123-146 193-216 (282)
175 PRK14951 DNA polymerase III su 95.8 0.035 7.5E-07 62.3 8.9 46 100-146 15-60 (618)
176 PRK07994 DNA polymerase III su 95.8 0.032 6.9E-07 62.8 8.6 46 100-146 15-60 (647)
177 PRK12422 chromosomal replicati 95.8 0.023 5.1E-07 61.6 7.4 72 124-217 141-212 (445)
178 TIGR00763 lon ATP-dependent pr 95.7 0.025 5.4E-07 66.1 8.0 46 101-146 320-369 (775)
179 KOG0735 AAA+-type ATPase [Post 95.7 0.052 1.1E-06 59.9 9.6 95 100-216 407-503 (952)
180 PRK14970 DNA polymerase III su 95.7 0.048 1E-06 58.0 9.5 46 100-146 16-61 (367)
181 PRK14964 DNA polymerase III su 95.7 0.046 1E-06 59.6 9.3 46 100-146 12-57 (491)
182 TIGR01241 FtsH_fam ATP-depende 95.7 0.035 7.5E-07 61.5 8.6 51 97-147 51-111 (495)
183 TIGR02881 spore_V_K stage V sp 95.7 0.013 2.9E-07 59.0 4.8 45 102-146 7-64 (261)
184 PRK06547 hypothetical protein; 95.7 0.015 3.3E-07 54.4 4.8 26 122-147 13-38 (172)
185 PRK04301 radA DNA repair and r 95.6 0.042 9.2E-07 57.1 8.4 103 113-216 91-207 (317)
186 PF12775 AAA_7: P-loop contain 95.6 0.019 4.2E-07 58.0 5.6 89 109-216 21-109 (272)
187 COG4608 AppF ABC-type oligopep 95.6 0.051 1.1E-06 53.7 8.3 89 123-216 38-136 (268)
188 PRK08972 fliI flagellum-specif 95.6 0.045 9.9E-07 58.3 8.5 91 123-217 161-262 (444)
189 TIGR02238 recomb_DMC1 meiotic 95.6 0.06 1.3E-06 55.5 9.2 66 115-181 87-156 (313)
190 cd02025 PanK Pantothenate kina 95.6 0.033 7.1E-07 54.5 7.0 21 126-146 1-21 (220)
191 PRK06921 hypothetical protein; 95.5 0.033 7.2E-07 56.1 7.1 37 123-161 116-153 (266)
192 PRK05642 DNA replication initi 95.5 0.051 1.1E-06 53.7 8.3 36 124-161 45-80 (234)
193 PRK10787 DNA-binding ATP-depen 95.5 0.046 9.9E-07 63.5 9.1 47 100-146 321-371 (784)
194 CHL00176 ftsH cell division pr 95.5 0.028 6.2E-07 63.5 7.2 96 98-217 180-285 (638)
195 TIGR02639 ClpA ATP-dependent C 95.5 0.047 1E-06 63.5 9.2 46 101-146 454-506 (731)
196 TIGR00390 hslU ATP-dependent p 95.5 0.038 8.3E-07 58.3 7.5 77 101-179 12-104 (441)
197 cd02019 NK Nucleoside/nucleoti 95.5 0.0099 2.1E-07 46.3 2.5 22 126-147 1-22 (69)
198 PF08423 Rad51: Rad51; InterP 95.5 0.032 6.9E-07 55.9 6.8 104 112-216 26-142 (256)
199 PRK06762 hypothetical protein; 95.5 0.011 2.4E-07 55.1 3.2 23 124-146 2-24 (166)
200 PF01695 IstB_IS21: IstB-like 95.5 0.021 4.5E-07 53.8 5.0 24 124-147 47-70 (178)
201 PRK08939 primosomal protein Dn 95.5 0.064 1.4E-06 55.2 8.9 90 105-216 135-226 (306)
202 cd00983 recA RecA is a bacter 95.4 0.04 8.7E-07 56.7 7.3 86 122-216 53-142 (325)
203 PLN03187 meiotic recombination 95.4 0.074 1.6E-06 55.4 9.3 66 116-182 118-187 (344)
204 TIGR02239 recomb_RAD51 DNA rep 95.4 0.07 1.5E-06 55.2 9.1 68 113-181 85-156 (316)
205 TIGR01243 CDC48 AAA family ATP 95.4 0.028 6E-07 65.5 6.8 49 98-146 175-234 (733)
206 KOG4341 F-box protein containi 95.4 0.0016 3.6E-08 67.0 -2.8 12 504-515 319-330 (483)
207 TIGR02236 recomb_radA DNA repa 95.4 0.065 1.4E-06 55.5 8.9 65 115-180 86-154 (310)
208 PRK10865 protein disaggregatio 95.4 0.063 1.4E-06 63.2 9.8 46 101-146 568-620 (857)
209 PRK06002 fliI flagellum-specif 95.4 0.05 1.1E-06 58.3 8.0 93 123-218 164-265 (450)
210 PRK07940 DNA polymerase III su 95.3 0.078 1.7E-06 56.5 9.3 46 101-146 5-58 (394)
211 cd03115 SRP The signal recogni 95.3 0.048 1E-06 51.1 7.0 21 126-146 2-22 (173)
212 PRK14952 DNA polymerase III su 95.3 0.074 1.6E-06 59.4 9.4 46 100-146 12-57 (584)
213 CHL00095 clpC Clp protease ATP 95.3 0.063 1.4E-06 63.2 9.2 46 101-146 509-561 (821)
214 KOG0733 Nuclear AAA ATPase (VC 95.3 0.06 1.3E-06 58.4 8.1 98 97-218 186-293 (802)
215 PRK06835 DNA replication prote 95.3 0.076 1.7E-06 55.1 8.8 35 125-161 184-218 (329)
216 COG1484 DnaC DNA replication p 95.2 0.055 1.2E-06 54.1 7.4 73 123-216 104-176 (254)
217 PRK14722 flhF flagellar biosyn 95.2 0.071 1.5E-06 56.0 8.5 85 123-216 136-224 (374)
218 PF13671 AAA_33: AAA domain; P 95.2 0.015 3.2E-07 52.6 3.0 21 126-146 1-21 (143)
219 cd01121 Sms Sms (bacterial rad 95.2 0.11 2.5E-06 54.8 10.0 97 112-216 70-167 (372)
220 PRK10867 signal recognition pa 95.2 0.086 1.9E-06 56.7 9.2 24 123-146 99-122 (433)
221 PRK03839 putative kinase; Prov 95.2 0.014 3.1E-07 55.2 3.0 22 126-147 2-23 (180)
222 PRK08927 fliI flagellum-specif 95.2 0.078 1.7E-06 56.8 8.8 91 123-217 157-258 (442)
223 PRK11889 flhF flagellar biosyn 95.2 0.092 2E-06 55.1 9.0 24 123-146 240-263 (436)
224 PRK04040 adenylate kinase; Pro 95.2 0.015 3.3E-07 55.3 3.2 23 124-146 2-24 (188)
225 PF00006 ATP-synt_ab: ATP synt 95.2 0.038 8.2E-07 53.6 5.9 86 125-216 16-114 (215)
226 COG1428 Deoxynucleoside kinase 95.2 0.016 3.5E-07 54.9 3.0 24 124-147 4-27 (216)
227 TIGR00959 ffh signal recogniti 95.1 0.092 2E-06 56.4 9.2 24 123-146 98-121 (428)
228 PRK09354 recA recombinase A; P 95.1 0.059 1.3E-06 56.0 7.4 93 115-216 50-147 (349)
229 TIGR00150 HI0065_YjeE ATPase, 95.1 0.033 7.1E-07 49.4 4.8 40 108-147 6-45 (133)
230 TIGR01360 aden_kin_iso1 adenyl 95.1 0.017 3.6E-07 54.9 3.2 24 123-146 2-25 (188)
231 PRK05201 hslU ATP-dependent pr 95.1 0.05 1.1E-06 57.5 6.9 77 101-179 15-107 (443)
232 PRK08903 DnaA regulatory inact 95.1 0.029 6.3E-07 55.2 5.0 43 104-147 22-65 (227)
233 PRK08149 ATP synthase SpaL; Va 95.1 0.075 1.6E-06 56.8 8.3 91 123-217 150-251 (428)
234 PRK12597 F0F1 ATP synthase sub 95.1 0.061 1.3E-06 58.0 7.7 93 123-216 142-246 (461)
235 PRK05439 pantothenate kinase; 95.1 0.092 2E-06 53.8 8.6 81 121-208 83-166 (311)
236 cd01135 V_A-ATPase_B V/A-type 95.1 0.068 1.5E-06 53.4 7.4 93 124-216 69-175 (276)
237 PRK13531 regulatory ATPase Rav 95.0 0.026 5.6E-07 60.8 4.7 42 101-146 20-61 (498)
238 TIGR00554 panK_bact pantothena 95.0 0.086 1.9E-06 53.6 8.2 81 122-208 60-142 (290)
239 PLN03186 DNA repair protein RA 95.0 0.12 2.6E-06 53.9 9.3 68 113-181 112-183 (342)
240 cd01878 HflX HflX subfamily. 95.0 0.064 1.4E-06 51.7 6.9 26 123-148 40-65 (204)
241 PRK14950 DNA polymerase III su 95.0 0.042 9E-07 62.1 6.4 46 100-146 15-60 (585)
242 PRK12678 transcription termina 95.0 0.036 7.9E-07 60.4 5.5 89 124-216 416-512 (672)
243 COG0468 RecA RecA/RadA recombi 95.0 0.12 2.6E-06 51.9 9.0 95 117-216 53-150 (279)
244 cd02023 UMPK Uridine monophosp 95.0 0.015 3.3E-07 55.9 2.5 21 126-146 1-21 (198)
245 PRK00771 signal recognition pa 95.0 0.13 2.9E-06 55.3 9.8 56 123-181 94-151 (437)
246 KOG1644 U2-associated snRNP A' 94.9 0.035 7.5E-07 52.1 4.4 104 505-618 42-150 (233)
247 TIGR03346 chaperone_ClpB ATP-d 94.9 0.12 2.5E-06 61.3 10.0 46 101-146 565-617 (852)
248 TIGR02012 tigrfam_recA protein 94.9 0.08 1.7E-06 54.5 7.6 86 122-216 53-142 (321)
249 TIGR00064 ftsY signal recognit 94.9 0.16 3.5E-06 51.3 9.7 25 122-146 70-94 (272)
250 cd02024 NRK1 Nicotinamide ribo 94.8 0.018 3.8E-07 54.6 2.4 21 126-146 1-21 (187)
251 cd02027 APSK Adenosine 5'-phos 94.8 0.06 1.3E-06 49.1 5.9 21 126-146 1-21 (149)
252 PTZ00088 adenylate kinase 1; P 94.8 0.035 7.6E-07 54.5 4.6 20 127-146 9-28 (229)
253 PRK00625 shikimate kinase; Pro 94.8 0.02 4.4E-07 53.6 2.8 21 126-146 2-22 (173)
254 PRK12724 flagellar biosynthesi 94.8 0.067 1.5E-06 56.7 6.8 23 124-146 223-245 (432)
255 COG1419 FlhF Flagellar GTP-bin 94.8 0.14 3.1E-06 53.6 9.0 58 123-182 202-262 (407)
256 PRK00131 aroK shikimate kinase 94.8 0.023 4.9E-07 53.2 3.1 23 124-146 4-26 (175)
257 PF07726 AAA_3: ATPase family 94.7 0.021 4.5E-07 49.9 2.3 27 127-155 2-28 (131)
258 PRK06936 type III secretion sy 94.7 0.13 2.9E-06 55.0 8.9 91 123-217 161-262 (439)
259 TIGR02322 phosphon_PhnN phosph 94.7 0.024 5.1E-07 53.5 3.0 23 125-147 2-24 (179)
260 PRK10463 hydrogenase nickel in 94.7 0.11 2.3E-06 52.5 7.8 25 122-146 102-126 (290)
261 COG1223 Predicted ATPase (AAA+ 94.7 0.043 9.3E-07 53.3 4.6 52 97-148 117-175 (368)
262 PRK07764 DNA polymerase III su 94.7 0.12 2.7E-06 60.1 9.3 45 101-146 15-59 (824)
263 PRK00889 adenylylsulfate kinas 94.7 0.028 6.1E-07 52.8 3.4 24 123-146 3-26 (175)
264 PRK14086 dnaA chromosomal repl 94.7 0.18 3.8E-06 56.3 10.0 73 124-218 314-388 (617)
265 PRK14953 DNA polymerase III su 94.7 0.18 3.9E-06 55.4 10.0 45 101-146 16-60 (486)
266 COG1102 Cmk Cytidylate kinase 94.6 0.038 8.2E-07 49.9 3.9 45 126-183 2-46 (179)
267 PRK12723 flagellar biosynthesi 94.6 0.19 4.2E-06 53.3 9.9 87 123-216 173-263 (388)
268 PTZ00185 ATPase alpha subunit; 94.6 0.14 3.1E-06 55.3 8.8 93 124-218 189-300 (574)
269 PRK09280 F0F1 ATP synthase sub 94.6 0.081 1.8E-06 56.9 7.0 93 123-216 143-247 (463)
270 PRK05896 DNA polymerase III su 94.6 0.04 8.6E-07 61.2 4.8 46 100-146 15-60 (605)
271 PRK06217 hypothetical protein; 94.6 0.024 5.2E-07 53.8 2.7 22 126-147 3-24 (183)
272 TIGR01040 V-ATPase_V1_B V-type 94.5 0.098 2.1E-06 56.0 7.4 95 123-217 140-257 (466)
273 PRK13947 shikimate kinase; Pro 94.5 0.026 5.7E-07 52.7 2.8 21 126-146 3-23 (171)
274 PLN02318 phosphoribulokinase/u 94.5 0.045 9.7E-07 60.2 4.8 33 114-146 55-87 (656)
275 cd02028 UMPK_like Uridine mono 94.5 0.024 5.3E-07 53.5 2.5 21 126-146 1-21 (179)
276 PRK14974 cell division protein 94.5 0.2 4.3E-06 52.1 9.4 55 123-181 139-196 (336)
277 PF00158 Sigma54_activat: Sigm 94.5 0.1 2.2E-06 48.6 6.6 45 103-147 1-45 (168)
278 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.024 5.3E-07 53.6 2.4 21 126-146 1-21 (183)
279 PF08433 KTI12: Chromatin asso 94.4 0.082 1.8E-06 53.3 6.3 22 125-146 2-23 (270)
280 cd01136 ATPase_flagellum-secre 94.4 0.16 3.4E-06 52.5 8.4 90 123-216 68-168 (326)
281 PRK05703 flhF flagellar biosyn 94.4 0.14 2.9E-06 55.3 8.3 86 124-216 221-308 (424)
282 PRK03846 adenylylsulfate kinas 94.4 0.036 7.9E-07 53.3 3.6 25 122-146 22-46 (198)
283 TIGR03263 guanyl_kin guanylate 94.4 0.03 6.5E-07 52.9 3.0 22 125-146 2-23 (180)
284 PRK14955 DNA polymerase III su 94.4 0.051 1.1E-06 58.4 5.0 46 100-146 15-60 (397)
285 PRK12727 flagellar biosynthesi 94.4 0.11 2.3E-06 56.8 7.3 24 123-146 349-372 (559)
286 TIGR01243 CDC48 AAA family ATP 94.4 0.12 2.7E-06 60.1 8.5 50 98-147 450-510 (733)
287 PF01583 APS_kinase: Adenylyls 94.4 0.043 9.3E-07 50.1 3.7 35 124-160 2-36 (156)
288 TIGR03305 alt_F1F0_F1_bet alte 94.4 0.082 1.8E-06 56.7 6.4 95 123-218 137-243 (449)
289 COG0542 clpA ATP-binding subun 94.3 0.11 2.3E-06 59.3 7.5 44 101-146 170-213 (786)
290 PLN00020 ribulose bisphosphate 94.3 0.09 2E-06 54.5 6.3 26 122-147 146-171 (413)
291 TIGR03498 FliI_clade3 flagella 94.3 0.15 3.2E-06 54.5 8.3 90 123-216 139-239 (418)
292 TIGR03345 VI_ClpV1 type VI sec 94.3 0.13 2.9E-06 60.4 8.6 46 101-146 566-618 (852)
293 cd01132 F1_ATPase_alpha F1 ATP 94.3 0.14 2.9E-06 51.3 7.4 87 124-216 69-170 (274)
294 PF07728 AAA_5: AAA domain (dy 94.3 0.076 1.6E-06 47.7 5.2 74 127-218 2-76 (139)
295 PRK05922 type III secretion sy 94.3 0.17 3.7E-06 54.2 8.6 90 124-217 157-257 (434)
296 KOG0991 Replication factor C, 94.3 0.05 1.1E-06 52.0 4.0 45 100-146 26-70 (333)
297 PRK05688 fliI flagellum-specif 94.3 0.18 3.9E-06 54.2 8.8 92 123-218 167-269 (451)
298 cd02020 CMPK Cytidine monophos 94.3 0.029 6.2E-07 50.8 2.5 21 126-146 1-21 (147)
299 KOG0744 AAA+-type ATPase [Post 94.3 0.17 3.7E-06 50.9 7.8 79 124-216 177-259 (423)
300 PRK07594 type III secretion sy 94.3 0.12 2.6E-06 55.3 7.4 91 123-217 154-255 (433)
301 PRK10751 molybdopterin-guanine 94.2 0.043 9.4E-07 51.1 3.5 24 123-146 5-28 (173)
302 PRK14738 gmk guanylate kinase; 94.2 0.039 8.5E-07 53.4 3.4 30 117-146 6-35 (206)
303 PRK14959 DNA polymerase III su 94.2 0.2 4.4E-06 56.0 9.3 45 101-146 16-60 (624)
304 PRK04296 thymidine kinase; Pro 94.2 0.054 1.2E-06 51.7 4.2 85 125-216 3-87 (190)
305 PRK13975 thymidylate kinase; P 94.2 0.038 8.2E-07 53.0 3.1 22 125-146 3-24 (196)
306 PF03205 MobB: Molybdopterin g 94.1 0.04 8.7E-07 49.7 3.0 38 125-164 1-39 (140)
307 COG1936 Predicted nucleotide k 94.1 0.036 7.7E-07 50.8 2.7 20 126-145 2-21 (180)
308 TIGR00678 holB DNA polymerase 94.1 0.29 6.3E-06 46.5 9.2 34 112-146 3-36 (188)
309 PF00625 Guanylate_kin: Guanyl 94.1 0.056 1.2E-06 51.2 4.2 37 124-162 2-38 (183)
310 PF00910 RNA_helicase: RNA hel 94.1 0.028 6.2E-07 48.0 2.0 20 127-146 1-20 (107)
311 cd02021 GntK Gluconate kinase 94.1 0.033 7E-07 50.8 2.5 22 126-147 1-22 (150)
312 PRK13949 shikimate kinase; Pro 94.1 0.035 7.7E-07 51.8 2.7 21 126-146 3-23 (169)
313 cd00227 CPT Chloramphenicol (C 94.1 0.037 7.9E-07 52.1 2.9 22 125-146 3-24 (175)
314 cd00071 GMPK Guanosine monopho 94.1 0.041 8.9E-07 49.4 3.0 21 126-146 1-21 (137)
315 TIGR00764 lon_rel lon-related 94.1 0.12 2.6E-06 58.5 7.3 76 100-182 17-93 (608)
316 PF01078 Mg_chelatase: Magnesi 94.0 0.088 1.9E-06 50.2 5.2 43 100-146 2-44 (206)
317 COG0470 HolB ATPase involved i 94.0 0.28 6.1E-06 51.0 9.7 45 102-146 2-46 (325)
318 PRK00300 gmk guanylate kinase; 94.0 0.043 9.2E-07 53.0 3.2 24 124-147 5-28 (205)
319 PRK07721 fliI flagellum-specif 94.0 0.23 5E-06 53.6 8.9 25 123-147 157-181 (438)
320 cd00464 SK Shikimate kinase (S 94.0 0.04 8.6E-07 50.4 2.7 20 127-146 2-21 (154)
321 PRK09099 type III secretion sy 93.9 0.17 3.6E-06 54.5 7.6 92 123-217 162-263 (441)
322 TIGR02397 dnaX_nterm DNA polym 93.8 0.083 1.8E-06 55.9 5.2 46 100-146 13-58 (355)
323 PRK10536 hypothetical protein; 93.8 0.11 2.3E-06 51.4 5.5 55 100-158 54-108 (262)
324 PRK10078 ribose 1,5-bisphospho 93.8 0.047 1E-06 51.9 3.0 23 125-147 3-25 (186)
325 KOG1644 U2-associated snRNP A' 93.8 0.097 2.1E-06 49.2 4.8 16 505-520 88-103 (233)
326 cd01672 TMPK Thymidine monopho 93.8 0.11 2.3E-06 49.8 5.5 21 126-146 2-22 (200)
327 COG1124 DppF ABC-type dipeptid 93.8 0.075 1.6E-06 51.5 4.2 24 123-146 32-55 (252)
328 COG2019 AdkA Archaeal adenylat 93.7 0.054 1.2E-06 49.2 2.9 23 124-146 4-26 (189)
329 KOG2739 Leucine-rich acidic nu 93.7 0.027 5.9E-07 54.9 1.1 108 451-589 39-149 (260)
330 PF13504 LRR_7: Leucine rich r 93.7 0.03 6.6E-07 30.4 0.9 16 456-471 2-17 (17)
331 PRK05057 aroK shikimate kinase 93.7 0.053 1.1E-06 50.8 3.1 23 124-146 4-26 (172)
332 TIGR03575 selen_PSTK_euk L-ser 93.7 0.2 4.4E-06 52.0 7.6 20 127-146 2-21 (340)
333 PTZ00035 Rad51 protein; Provis 93.7 0.47 1E-05 49.5 10.4 68 113-181 107-178 (337)
334 TIGR01041 ATP_syn_B_arch ATP s 93.7 0.2 4.3E-06 54.1 7.8 94 124-217 141-248 (458)
335 PRK14530 adenylate kinase; Pro 93.7 0.048 1E-06 53.2 2.9 21 126-146 5-25 (215)
336 COG0237 CoaE Dephospho-CoA kin 93.7 0.054 1.2E-06 51.9 3.1 23 124-146 2-24 (201)
337 COG0563 Adk Adenylate kinase a 93.7 0.048 1E-06 51.3 2.7 22 126-147 2-23 (178)
338 TIGR03877 thermo_KaiC_1 KaiC d 93.6 0.32 6.9E-06 48.2 8.7 55 115-174 12-67 (237)
339 PLN02348 phosphoribulokinase 93.6 0.12 2.7E-06 54.2 5.8 26 121-146 46-71 (395)
340 PRK13948 shikimate kinase; Pro 93.6 0.059 1.3E-06 50.9 3.2 24 123-146 9-32 (182)
341 PRK06620 hypothetical protein; 93.6 0.15 3.2E-06 49.7 6.1 48 100-147 16-67 (214)
342 PF08477 Miro: Miro-like prote 93.6 0.059 1.3E-06 46.7 3.0 22 127-148 2-23 (119)
343 PRK12339 2-phosphoglycerate ki 93.6 0.061 1.3E-06 51.5 3.3 23 124-146 3-25 (197)
344 TIGR02640 gas_vesic_GvpN gas v 93.6 0.17 3.7E-06 51.0 6.7 56 108-172 9-64 (262)
345 PRK12726 flagellar biosynthesi 93.6 0.26 5.7E-06 51.6 8.1 88 122-216 204-294 (407)
346 PRK11034 clpA ATP-dependent Cl 93.6 0.26 5.7E-06 57.0 8.9 45 102-146 459-510 (758)
347 PRK13946 shikimate kinase; Pro 93.5 0.055 1.2E-06 51.3 2.9 23 124-146 10-32 (184)
348 PRK11823 DNA repair protein Ra 93.5 0.3 6.5E-06 53.2 8.9 98 111-216 67-165 (446)
349 PF03308 ArgK: ArgK protein; 93.5 0.078 1.7E-06 52.1 3.9 65 109-173 14-78 (266)
350 KOG1532 GTPase XAB1, interacts 93.5 0.049 1.1E-06 53.3 2.4 26 122-147 17-42 (366)
351 PF08298 AAA_PrkA: PrkA AAA do 93.4 0.1 2.2E-06 53.8 4.8 47 100-146 60-110 (358)
352 PRK07196 fliI flagellum-specif 93.4 0.23 5E-06 53.3 7.7 25 123-147 154-178 (434)
353 TIGR00176 mobB molybdopterin-g 93.4 0.052 1.1E-06 49.9 2.5 21 126-146 1-21 (155)
354 PRK14721 flhF flagellar biosyn 93.4 0.31 6.7E-06 52.2 8.5 24 123-146 190-213 (420)
355 COG0003 ArsA Predicted ATPase 93.4 0.11 2.4E-06 53.5 5.0 47 124-172 2-48 (322)
356 PLN02924 thymidylate kinase 93.4 0.26 5.7E-06 48.1 7.5 54 123-177 15-68 (220)
357 TIGR01313 therm_gnt_kin carboh 93.4 0.049 1.1E-06 50.5 2.2 20 127-146 1-20 (163)
358 cd04139 RalA_RalB RalA/RalB su 93.4 0.069 1.5E-06 49.1 3.3 23 126-148 2-24 (164)
359 TIGR01287 nifH nitrogenase iro 93.4 0.054 1.2E-06 55.1 2.7 22 125-146 1-22 (275)
360 PRK06761 hypothetical protein; 93.4 0.12 2.7E-06 52.1 5.2 23 125-147 4-26 (282)
361 PF06309 Torsin: Torsin; Inte 93.4 0.15 3.3E-06 44.4 5.1 46 101-146 25-75 (127)
362 TIGR03496 FliI_clade1 flagella 93.3 0.26 5.7E-06 52.7 8.0 90 123-216 136-236 (411)
363 COG1222 RPT1 ATP-dependent 26S 93.3 0.12 2.5E-06 52.9 4.9 46 101-146 151-207 (406)
364 PRK14723 flhF flagellar biosyn 93.3 0.44 9.5E-06 54.6 10.1 23 124-146 185-207 (767)
365 PRK09435 membrane ATPase/prote 93.3 0.12 2.7E-06 53.5 5.3 37 110-146 42-78 (332)
366 COG3640 CooC CO dehydrogenase 93.3 0.13 2.8E-06 49.6 4.8 21 126-146 2-22 (255)
367 PRK04182 cytidylate kinase; Pr 93.3 0.065 1.4E-06 50.4 3.0 21 126-146 2-22 (180)
368 PRK13765 ATP-dependent proteas 93.3 0.15 3.3E-06 57.6 6.3 76 100-182 30-106 (637)
369 TIGR01425 SRP54_euk signal rec 93.3 0.36 7.9E-06 51.7 8.8 24 123-146 99-122 (429)
370 cd00820 PEPCK_HprK Phosphoenol 93.3 0.075 1.6E-06 45.1 3.0 22 124-145 15-36 (107)
371 PF00560 LRR_1: Leucine Rich R 93.2 0.021 4.6E-07 33.3 -0.3 22 428-454 1-22 (22)
372 TIGR01039 atpD ATP synthase, F 93.2 0.25 5.5E-06 53.0 7.6 95 123-218 142-248 (461)
373 COG1703 ArgK Putative periplas 93.2 0.099 2.1E-06 52.2 4.1 65 110-174 37-101 (323)
374 PRK06793 fliI flagellum-specif 93.2 0.29 6.2E-06 52.5 7.9 93 123-218 155-257 (432)
375 COG0542 clpA ATP-binding subun 93.2 0.22 4.7E-06 56.8 7.3 101 101-218 491-604 (786)
376 TIGR03497 FliI_clade2 flagella 93.2 0.34 7.4E-06 51.8 8.5 91 123-217 136-237 (413)
377 PRK09519 recA DNA recombinatio 93.2 0.26 5.6E-06 56.6 7.9 96 112-216 47-147 (790)
378 COG1100 GTPase SAR1 and relate 93.2 0.073 1.6E-06 51.9 3.2 24 125-148 6-29 (219)
379 PRK05537 bifunctional sulfate 93.1 0.13 2.9E-06 57.5 5.5 47 100-146 368-414 (568)
380 CHL00195 ycf46 Ycf46; Provisio 93.1 0.3 6.5E-06 53.5 8.0 48 100-147 227-282 (489)
381 PRK06820 type III secretion sy 93.1 0.55 1.2E-05 50.5 9.8 39 123-165 162-200 (440)
382 TIGR00750 lao LAO/AO transport 93.0 0.11 2.4E-06 53.5 4.5 36 111-146 21-56 (300)
383 TIGR03324 alt_F1F0_F1_al alter 93.0 0.25 5.5E-06 53.6 7.3 91 123-217 161-264 (497)
384 TIGR02030 BchI-ChlI magnesium 93.0 0.13 2.9E-06 53.5 5.0 44 101-146 4-47 (337)
385 cd02117 NifH_like This family 93.0 0.071 1.5E-06 51.9 2.9 22 125-146 1-22 (212)
386 PRK13230 nitrogenase reductase 93.0 0.073 1.6E-06 54.2 3.0 22 125-146 2-23 (279)
387 PRK05800 cobU adenosylcobinami 93.0 0.44 9.5E-06 44.5 8.0 82 126-216 3-85 (170)
388 TIGR02173 cyt_kin_arch cytidyl 93.0 0.077 1.7E-06 49.5 3.0 21 126-146 2-22 (171)
389 PF03193 DUF258: Protein of un 93.0 0.14 3E-06 47.0 4.5 36 108-148 24-59 (161)
390 PRK14954 DNA polymerase III su 93.0 0.12 2.6E-06 58.3 4.9 46 100-146 15-60 (620)
391 PRK06067 flagellar accessory p 92.9 0.4 8.6E-06 47.4 8.2 95 115-216 16-129 (234)
392 TIGR00073 hypB hydrogenase acc 92.9 0.09 1.9E-06 50.9 3.4 25 122-146 20-44 (207)
393 COG0714 MoxR-like ATPases [Gen 92.9 0.23 5E-06 51.9 6.7 65 101-174 24-88 (329)
394 PRK09111 DNA polymerase III su 92.9 0.12 2.6E-06 58.1 4.8 46 100-146 23-68 (598)
395 cd00544 CobU Adenosylcobinamid 92.9 0.4 8.7E-06 44.7 7.6 79 127-216 2-82 (169)
396 PRK09087 hypothetical protein; 92.9 0.13 2.9E-06 50.5 4.6 24 124-147 44-67 (226)
397 PF00005 ABC_tran: ABC transpo 92.9 0.079 1.7E-06 47.4 2.8 24 124-147 11-34 (137)
398 PRK14971 DNA polymerase III su 92.9 0.51 1.1E-05 53.4 9.8 46 100-146 16-61 (614)
399 PRK09825 idnK D-gluconate kina 92.9 0.082 1.8E-06 49.7 2.9 22 125-146 4-25 (176)
400 PRK14527 adenylate kinase; Pro 92.8 0.086 1.9E-06 50.3 3.2 25 123-147 5-29 (191)
401 TIGR00041 DTMP_kinase thymidyl 92.8 0.2 4.3E-06 47.9 5.7 23 125-147 4-26 (195)
402 TIGR01026 fliI_yscN ATPase Fli 92.8 0.32 7E-06 52.5 7.8 25 123-147 162-186 (440)
403 KOG1969 DNA replication checkp 92.8 0.22 4.7E-06 55.4 6.4 127 123-291 325-468 (877)
404 PRK14737 gmk guanylate kinase; 92.8 0.097 2.1E-06 49.7 3.4 24 123-146 3-26 (186)
405 PRK06995 flhF flagellar biosyn 92.8 0.38 8.2E-06 52.4 8.3 24 123-146 255-278 (484)
406 cd02022 DPCK Dephospho-coenzym 92.8 0.071 1.5E-06 50.4 2.5 21 126-146 1-21 (179)
407 PRK09112 DNA polymerase III su 92.8 0.17 3.7E-06 53.1 5.5 47 99-146 21-67 (351)
408 PRK13695 putative NTPase; Prov 92.8 0.096 2.1E-06 49.2 3.3 22 126-147 2-23 (174)
409 PRK13236 nitrogenase reductase 92.8 0.095 2.1E-06 53.9 3.5 23 122-144 4-26 (296)
410 cd01983 Fer4_NifH The Fer4_Nif 92.8 0.079 1.7E-06 43.7 2.5 21 126-146 1-21 (99)
411 TIGR02546 III_secr_ATP type II 92.8 0.44 9.5E-06 51.3 8.7 90 123-216 144-244 (422)
412 KOG1947 Leucine rich repeat pr 92.7 0.018 3.9E-07 63.4 -2.0 227 398-646 187-441 (482)
413 TIGR00416 sms DNA repair prote 92.7 0.6 1.3E-05 50.9 9.8 53 110-164 80-132 (454)
414 PRK13232 nifH nitrogenase redu 92.7 0.082 1.8E-06 53.7 2.9 22 125-146 2-23 (273)
415 PLN02200 adenylate kinase fami 92.7 0.1 2.2E-06 51.6 3.4 24 123-146 42-65 (234)
416 PRK03731 aroL shikimate kinase 92.7 0.084 1.8E-06 49.3 2.8 22 125-146 3-24 (171)
417 PF13481 AAA_25: AAA domain; P 92.7 0.34 7.3E-06 46.1 7.1 89 125-217 33-151 (193)
418 cd03214 ABC_Iron-Siderophores_ 92.7 0.69 1.5E-05 43.6 9.1 89 123-216 24-124 (180)
419 cd03116 MobB Molybdenum is an 92.7 0.1 2.2E-06 48.1 3.2 22 125-146 2-23 (159)
420 COG0467 RAD55 RecA-superfamily 92.7 0.17 3.6E-06 51.0 5.1 42 122-165 21-62 (260)
421 PF00154 RecA: recA bacterial 92.6 0.29 6.2E-06 50.4 6.7 86 122-216 51-140 (322)
422 PF01926 MMR_HSR1: 50S ribosom 92.6 0.095 2.1E-06 45.3 2.9 21 127-147 2-22 (116)
423 PRK07960 fliI flagellum-specif 92.6 0.27 5.8E-06 52.8 6.7 24 123-146 174-197 (455)
424 PF13521 AAA_28: AAA domain; P 92.6 0.085 1.8E-06 48.9 2.7 20 127-146 2-21 (163)
425 PF03266 NTPase_1: NTPase; In 92.6 0.085 1.8E-06 49.2 2.7 21 127-147 2-22 (168)
426 PRK14493 putative bifunctional 92.6 0.092 2E-06 53.0 3.1 34 125-161 2-35 (274)
427 cd02040 NifH NifH gene encodes 92.6 0.087 1.9E-06 53.3 3.0 22 125-146 2-23 (270)
428 PRK13768 GTPase; Provisional 92.5 0.1 2.2E-06 52.3 3.2 23 124-146 2-24 (253)
429 COG0194 Gmk Guanylate kinase [ 92.5 0.16 3.4E-06 47.3 4.1 25 124-148 4-28 (191)
430 PRK15453 phosphoribulokinase; 92.5 0.11 2.4E-06 52.1 3.4 24 123-146 4-27 (290)
431 PLN02796 D-glycerate 3-kinase 92.5 0.27 5.8E-06 50.9 6.3 24 123-146 99-122 (347)
432 COG0703 AroK Shikimate kinase 92.5 0.099 2.2E-06 48.3 2.8 27 126-154 4-30 (172)
433 PRK08099 bifunctional DNA-bind 92.5 0.089 1.9E-06 56.2 2.9 25 122-146 217-241 (399)
434 CHL00060 atpB ATP synthase CF1 92.5 0.45 9.7E-06 51.6 8.2 95 123-218 160-273 (494)
435 PRK08356 hypothetical protein; 92.4 0.12 2.5E-06 49.6 3.5 22 124-145 5-26 (195)
436 TIGR03574 selen_PSTK L-seryl-t 92.4 0.081 1.7E-06 52.9 2.4 21 126-146 1-21 (249)
437 cd01134 V_A-ATPase_A V/A-type 92.4 0.53 1.1E-05 48.7 8.3 49 124-176 157-206 (369)
438 COG2607 Predicted ATPase (AAA+ 92.4 0.28 6E-06 47.5 5.7 54 98-153 57-112 (287)
439 PF10662 PduV-EutP: Ethanolami 92.4 0.1 2.2E-06 46.7 2.8 24 125-148 2-25 (143)
440 PF02562 PhoH: PhoH-like prote 92.4 0.14 3.1E-06 49.1 3.9 53 105-161 4-56 (205)
441 PRK05342 clpX ATP-dependent pr 92.4 0.17 3.6E-06 54.3 4.8 46 101-146 71-130 (412)
442 TIGR02902 spore_lonB ATP-depen 92.3 0.16 3.4E-06 56.7 4.8 45 101-147 65-109 (531)
443 PF14532 Sigma54_activ_2: Sigm 92.3 0.067 1.5E-06 48.1 1.6 45 104-148 1-45 (138)
444 PRK01184 hypothetical protein; 92.3 0.1 2.2E-06 49.4 2.9 19 125-143 2-20 (184)
445 cd01131 PilT Pilus retraction 92.3 0.14 3.1E-06 49.1 3.9 81 125-218 2-85 (198)
446 CHL00059 atpA ATP synthase CF1 92.3 0.39 8.5E-06 51.9 7.5 88 124-217 141-243 (485)
447 PRK08472 fliI flagellum-specif 92.3 0.45 9.7E-06 51.1 7.9 40 123-166 156-195 (434)
448 CHL00081 chlI Mg-protoporyphyr 92.3 0.14 3E-06 53.4 4.0 47 98-146 14-60 (350)
449 PRK00698 tmk thymidylate kinas 92.3 0.11 2.4E-06 50.0 3.1 22 125-146 4-25 (205)
450 COG0593 DnaA ATPase involved i 92.3 0.57 1.2E-05 49.7 8.5 97 101-218 88-186 (408)
451 PF02374 ArsA_ATPase: Anion-tr 92.2 0.1 2.2E-06 53.8 2.9 22 125-146 2-23 (305)
452 COG1763 MobB Molybdopterin-gua 92.2 0.1 2.2E-06 47.9 2.6 23 124-146 2-24 (161)
453 PRK10416 signal recognition pa 92.2 0.12 2.7E-06 53.4 3.5 24 123-146 113-136 (318)
454 cd01428 ADK Adenylate kinase ( 92.2 0.1 2.2E-06 49.8 2.7 20 127-146 2-21 (194)
455 KOG2123 Uncharacterized conser 92.2 0.027 5.8E-07 55.3 -1.3 77 398-486 18-96 (388)
456 cd01862 Rab7 Rab7 subfamily. 92.1 0.11 2.4E-06 48.2 2.9 22 126-147 2-23 (172)
457 cd04119 RJL RJL (RabJ-Like) su 92.1 0.13 2.9E-06 47.3 3.4 22 127-148 3-24 (168)
458 KOG3347 Predicted nucleotide k 92.1 0.1 2.2E-06 46.4 2.3 23 124-146 7-29 (176)
459 PLN02165 adenylate isopentenyl 92.1 0.12 2.6E-06 53.2 3.2 25 123-147 42-66 (334)
460 KOG3308 Uncharacterized protei 92.1 0.2 4.2E-06 47.1 4.2 24 123-146 3-26 (225)
461 smart00173 RAS Ras subfamily o 92.0 0.14 3E-06 47.2 3.3 22 126-147 2-23 (164)
462 cd03225 ABC_cobalt_CbiO_domain 92.0 0.12 2.6E-06 50.2 3.0 24 123-146 26-49 (211)
463 PRK06305 DNA polymerase III su 92.0 0.2 4.3E-06 54.6 5.0 46 100-146 16-61 (451)
464 COG2842 Uncharacterized ATPase 92.0 0.56 1.2E-05 47.0 7.6 105 100-218 71-176 (297)
465 PRK08154 anaerobic benzoate ca 92.0 0.2 4.4E-06 51.8 4.8 25 122-146 131-155 (309)
466 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.0 0.12 2.6E-06 50.5 3.0 23 124-146 30-52 (218)
467 cd01122 GP4d_helicase GP4d_hel 92.0 0.78 1.7E-05 46.4 9.1 54 123-180 29-83 (271)
468 TIGR02673 FtsE cell division A 92.0 0.19 4.1E-06 48.9 4.4 34 124-160 28-61 (214)
469 PF03029 ATP_bind_1: Conserved 91.9 0.09 2E-06 52.0 2.1 20 129-148 1-20 (238)
470 cd03229 ABC_Class3 This class 91.9 0.13 2.8E-06 48.5 3.0 23 124-146 26-48 (178)
471 cd01858 NGP_1 NGP-1. Autoanti 91.9 0.27 5.9E-06 45.2 5.2 44 105-148 82-126 (157)
472 PRK13233 nifH nitrogenase redu 91.9 0.12 2.6E-06 52.5 3.1 21 125-145 3-23 (275)
473 cd03269 ABC_putative_ATPase Th 91.9 0.2 4.3E-06 48.6 4.5 35 123-160 25-59 (210)
474 TIGR00231 small_GTP small GTP- 91.9 0.15 3.2E-06 46.1 3.3 23 126-148 3-25 (161)
475 cd03114 ArgK-like The function 91.9 0.12 2.5E-06 47.2 2.5 21 126-146 1-21 (148)
476 PRK13407 bchI magnesium chelat 91.8 0.17 3.7E-06 52.6 4.1 46 99-146 6-51 (334)
477 cd02026 PRK Phosphoribulokinas 91.8 0.11 2.3E-06 52.7 2.5 21 126-146 1-21 (273)
478 PHA02244 ATPase-like protein 91.8 0.27 5.9E-06 51.3 5.4 33 110-146 109-141 (383)
479 PRK13235 nifH nitrogenase redu 91.8 0.12 2.7E-06 52.4 2.9 21 125-145 2-22 (274)
480 TIGR01817 nifA Nif-specific re 91.8 0.6 1.3E-05 52.4 8.7 49 99-147 194-242 (534)
481 TIGR00455 apsK adenylylsulfate 91.8 0.15 3.3E-06 48.2 3.4 24 123-146 17-40 (184)
482 PHA02575 1 deoxynucleoside mon 91.8 0.13 2.8E-06 49.7 2.8 21 126-146 2-22 (227)
483 PF00142 Fer4_NifH: 4Fe-4S iro 91.8 0.13 2.8E-06 50.7 2.9 43 125-169 1-43 (273)
484 PRK14532 adenylate kinase; Pro 91.8 0.12 2.7E-06 49.1 2.7 20 127-146 3-22 (188)
485 TIGR00960 3a0501s02 Type II (G 91.7 0.13 2.8E-06 50.1 3.0 23 124-146 29-51 (216)
486 cd01673 dNK Deoxyribonucleosid 91.7 0.11 2.4E-06 49.5 2.4 22 126-147 1-22 (193)
487 cd04163 Era Era subfamily. Er 91.7 0.16 3.4E-06 46.5 3.4 24 124-147 3-26 (168)
488 TIGR02016 BchX chlorophyllide 91.7 0.13 2.7E-06 52.9 2.9 22 125-146 1-22 (296)
489 cd01130 VirB11-like_ATPase Typ 91.7 0.16 3.4E-06 48.3 3.4 35 109-146 13-47 (186)
490 cd03265 ABC_DrrA DrrA is the A 91.7 0.22 4.7E-06 48.7 4.5 34 124-160 26-59 (220)
491 COG0125 Tmk Thymidylate kinase 91.7 0.33 7.2E-06 46.7 5.6 50 124-175 3-52 (208)
492 cd00876 Ras Ras family. The R 91.7 0.16 3.4E-06 46.4 3.3 21 127-147 2-22 (160)
493 cd03297 ABC_ModC_molybdenum_tr 91.7 0.15 3.2E-06 49.7 3.2 23 123-146 23-45 (214)
494 COG5238 RNA1 Ran GTPase-activa 91.7 0.067 1.5E-06 52.4 0.8 107 505-617 185-312 (388)
495 PRK08533 flagellar accessory p 91.7 0.69 1.5E-05 45.5 8.0 48 123-175 23-71 (230)
496 TIGR01166 cbiO cobalt transpor 91.6 0.14 3E-06 48.8 3.0 23 124-146 18-40 (190)
497 cd03222 ABC_RNaseL_inhibitor T 91.6 0.15 3.2E-06 47.9 3.1 23 124-146 25-47 (177)
498 PRK04328 hypothetical protein; 91.6 0.53 1.2E-05 47.0 7.3 49 115-165 14-62 (249)
499 cd02034 CooC The accessory pro 91.6 0.14 3.1E-06 44.4 2.7 20 127-146 2-21 (116)
500 TIGR00382 clpX endopeptidase C 91.6 0.26 5.6E-06 52.7 5.2 47 100-146 76-138 (413)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-74 Score=652.92 Aligned_cols=612 Identities=24% Similarity=0.293 Sum_probs=464.3
Q ss_pred cHHHHHHHHHHHHhhcCccccceehhhccccCCC---------------CchHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 048216 11 TLAELEDFMAIIDKICCFSYDTFAISITQQKSQS---------------GCSEDICDALLGLQSRIIDIKQRMQQVQYIH 75 (654)
Q Consensus 11 ~~~~~k~~~~~~~d~~~~~~d~~~~~~~~~~~~~---------------~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~ 75 (654)
|...+++..|+++++ ++.|.......+... +..++.+..+..+.+|+-.+.+..+.++ ..
T Consensus 60 ~~e~~~~~~~~~e~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~-~~ 134 (889)
T KOG4658|consen 60 WEEDVGDLVYLAEDI----IWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLG-SK 134 (889)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhc-cc
Confidence 667788888888888 777776665442221 3348888888899999999999999987 54
Q ss_pred ccccccccccccccCCCC-CCCCCCCCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcccc-ccCC
Q 048216 76 SGIVDELKSIEAKAGNFP-ASSSFKDRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNY-VKHY 153 (654)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~ 153 (654)
......+.. ......+ +.+...+.+ ||.+..++++++.|.+++. .++||+||||+||||||+.|+|+.. ++.+
T Consensus 135 ~~~~~~~~~--~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~ 209 (889)
T KOG4658|consen 135 GVFEVVGES--LDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNH 209 (889)
T ss_pred cceeccccc--ccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhccc
Confidence 422121111 1111222 445455555 9999999999999999864 9999999999999999999999987 9999
Q ss_pred cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccccC---------------
Q 048216 154 FDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFEN--------------- 218 (654)
Q Consensus 154 F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~--------------- 218 (654)
||.++||+||+.|+...++++|+..++.........+.++ ++..|.+.|++|||||||||||+
T Consensus 210 Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~--~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~ 287 (889)
T KOG4658|consen 210 FDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDE--LASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRE 287 (889)
T ss_pred CceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHH--HHHHHHHHhccCceEEEEecccccccHHhcCCCCCCcc
Confidence 9999999999999999999999999988554222223345 99999999999999999999999
Q ss_pred -c---------cccccc-ccCCCCcee-----------------------------------E-ecCCchHHHHHHH-hh
Q 048216 219 -G---------ENIGLD-FVPTRGPLR-----------------------------------V-TYKGWPFYILYHR-SI 250 (654)
Q Consensus 219 -G---------~~v~~~-~~~~~~~~~-----------------------------------v-~c~GlPLai~~~g-~L 250 (654)
| ++||.. |++ ...++ | +|+|+|||++++| .|
T Consensus 288 ~g~KvvlTTRs~~V~~~~m~~-~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~m 366 (889)
T KOG4658|consen 288 NGSKVVLTTRSEEVCGRAMGV-DYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLL 366 (889)
T ss_pred CCeEEEEEeccHhhhhccccC-CccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHh
Confidence 2 667776 444 23333 7 9999999999999 99
Q ss_pred cccccc-chhc---------cCC--------CchhhhhhcCCchhHHHHHhhhccCCCCceeChHHHHHHHHHcCCCC--
Q 048216 251 SQKENI-EEAL---------DEP--------RGLQVVAYCMLPFYLKLFCLYLSVFPVHFDICTKQLYQLWIAEGFIP-- 310 (654)
Q Consensus 251 ~~~~~~-~~~l---------~~~--------~~~l~~sy~~L~~~~k~cfly~s~Fp~~~~i~~~~Li~~Wiaegfi~-- 310 (654)
+.|... .|+- ..+ .++|++||+.||+++|.||+|||+||+||+|+++.||.+||||||+.
T Consensus 367 a~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~ 446 (889)
T KOG4658|consen 367 ACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPL 446 (889)
T ss_pred cCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcc
Confidence 999332 3331 111 69999999999999999999999999999999999999999999997
Q ss_pred ---CCHHHHHHHHHHHHHhCCCcccccCCCCCCcceEEeChhHHHHHHHhhc-----cCCeEEeccC-----CccccccC
Q 048216 311 ---DNNEAAAEKYLEQLINGGFVDAGKRSDISRINTCSIPGRCSPALLTVAF-----EGEFIISPIM-----DQEVRLRE 377 (654)
Q Consensus 311 ---~~~e~~~~~~~~~L~~~sll~~~~~~~~g~~~~~~mhdlv~dla~~i~~-----~e~~~~~~~~-----~~~~~~~~ 377 (654)
.+++++|+.|+.+|++++|++..... ++..+|+|||+||++|.++|+ +++++. ..+ ..+...+.
T Consensus 447 ~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv-~~~~~~~~~~~~~~~~ 523 (889)
T KOG4658|consen 447 DGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIV-SDGVGLSEIPQVKSWN 523 (889)
T ss_pred ccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEE-ECCcCccccccccchh
Confidence 68899999999999999999987654 677899999999999999999 676544 221 11223556
Q ss_pred ceeEEEEecCCCCccccccc-cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCC
Q 048216 378 NVKRFTAHEKLNDFGFLDDF-DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLN 456 (654)
Q Consensus 378 ~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~ 456 (654)
.+||++++ ++.....+... +++|+||.+..+... .......+|..|+.||||||++|. .+.+||++| ++|-+
T Consensus 524 ~~rr~s~~-~~~~~~~~~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~---~l~~LP~~I-~~Li~ 596 (889)
T KOG4658|consen 524 SVRRMSLM-NNKIEHIAGSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNS---SLSKLPSSI-GELVH 596 (889)
T ss_pred heeEEEEe-ccchhhccCCCCCCccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCC---ccCcCChHH-hhhhh
Confidence 79999999 77766677777 889999999998630 023556779999999999999998 899999999 99999
Q ss_pred ceEEcCCCccccccChhhhccccccceeccc-------------cccccC----------CcccchhcCCCCCCCeEEEe
Q 048216 457 LYTLDMPFSYIDHTADEFWKVSKLRYLNFGA-------------ITLPAH----------PGKYCNSLENLNFISALHHC 513 (654)
Q Consensus 457 L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~-------------l~~l~~----------~~~l~~~l~~l~~L~~L~l~ 513 (654)
||+|+++++.+..+|.++++|++|.||++.. +++|+. ....-..+.++.+|+.|++.
T Consensus 597 LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 597 LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999999999999999999999999999864 112210 00001112223333333332
Q ss_pred ccCC---ccc------------------chhhhcccccCCCCCe-EEEEeecC---------------------------
Q 048216 514 YCTE---DIL------------------GRLLVQILILSCLESL-KLANESKM--------------------------- 544 (654)
Q Consensus 514 ~~~~---~~~------------------~~~~~l~~l~~~~~~L-~L~l~~~~--------------------------- 544 (654)
..+. +.+ ........+..+. +| .|.+.++.
T Consensus 677 ~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~-~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 677 ISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLG-NLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred cchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccccc-CcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh
Confidence 2211 000 0000112233344 55 55554321
Q ss_pred ----CCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCC
Q 048216 545 ----PRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLW 620 (654)
Q Consensus 545 ----~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~ 620 (654)
.+.|. |.. +|++|++|++..|....++++....+..++.+.+..+.+.+..+....++|+++..+.+.. +.
T Consensus 756 ~~~~~r~l~---~~~-f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~-~~ 830 (889)
T KOG4658|consen 756 NCHMLRDLT---WLL-FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF-LK 830 (889)
T ss_pred ccccccccc---hhh-ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc-cc
Confidence 12233 443 4599999999999988888888888888888777766666665667778899999999987 44
Q ss_pred CcceeEcC----ccccccceeeeecC-cCCcccccc
Q 048216 621 LEEWTMGI----RAMPKLECLIINPC-AHLKGFLNS 651 (654)
Q Consensus 621 l~~l~~~~----~~~p~L~~L~i~~C-~~L~~lP~~ 651 (654)
+++|.++. +.||.+..+.+.+| +++..+|++
T Consensus 831 l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 831 LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred hhheehhcCcccccCccccccceeccccceeecCCc
Confidence 88888777 78999999999997 888889886
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-50 Score=481.95 Aligned_cols=509 Identities=16% Similarity=0.169 Sum_probs=331.0
Q ss_pred CCCCCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEe---CCC--------
Q 048216 97 SFKDRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQE---SLP-------- 165 (654)
Q Consensus 97 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~-------- 165 (654)
..+.+++|||+++++++..+|..+.++++|||||||||+||||||+++|+ ++..+|++.+|+.. +..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccc
Confidence 34567899999999999999977767899999999999999999999999 78899999888742 211
Q ss_pred ---CC-HHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccccC----------------c------
Q 048216 166 ---YD-ADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFEN----------------G------ 219 (654)
Q Consensus 166 ---~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~----------------G------ 219 (654)
++ ...++++++.++..... ..... ...++++|++||+||||||||+ |
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~----~~~~~---~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKD----IKIYH---LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCC----cccCC---HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEE
Confidence 11 23456667766654422 11112 2457888999999999999987 2
Q ss_pred ---ccccccccCCCCcee----------------------------------E-ecCCchHHHHHHH-hhccccccchh-
Q 048216 220 ---ENIGLDFVPTRGPLR----------------------------------V-TYKGWPFYILYHR-SISQKENIEEA- 259 (654)
Q Consensus 220 ---~~v~~~~~~~~~~~~----------------------------------v-~c~GlPLai~~~g-~L~~~~~~~~~- 259 (654)
..++..++.. ++|+ | +|+|+||||+++| .|+++....|+
T Consensus 331 Trd~~vl~~~~~~-~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~ 409 (1153)
T PLN03210 331 TKDKHFLRAHGID-HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMD 409 (1153)
T ss_pred eCcHHHHHhcCCC-eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHH
Confidence 2233222222 2333 6 9999999999999 99998555554
Q ss_pred ----ccC----C-CchhhhhhcCCchh-HHHHHhhhccCCCCceeChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCC
Q 048216 260 ----LDE----P-RGLQVVAYCMLPFY-LKLFCLYLSVFPVHFDICTKQLYQLWIAEGFIPDNNEAAAEKYLEQLINGGF 329 (654)
Q Consensus 260 ----l~~----~-~~~l~~sy~~L~~~-~k~cfly~s~Fp~~~~i~~~~Li~~Wiaegfi~~~~e~~~~~~~~~L~~~sl 329 (654)
+.. + .++|++||++|+++ .|.||++||+||.+..+ ..+..|+|.+... ++..++.|+++||
T Consensus 410 ~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksL 480 (1153)
T PLN03210 410 MLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSL 480 (1153)
T ss_pred HHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCC
Confidence 221 2 78999999999875 99999999999998754 3477788876552 3334889999999
Q ss_pred cccccCCCCCCcceEEeChhHHHHHHHhhccCC-------eEEeccCC-----ccccccCceeEEE--------------
Q 048216 330 VDAGKRSDISRINTCSIPGRCSPALLTVAFEGE-------FIISPIMD-----QEVRLRENVKRFT-------------- 383 (654)
Q Consensus 330 l~~~~~~~~g~~~~~~mhdlv~dla~~i~~~e~-------~~~~~~~~-----~~~~~~~~~r~ls-------------- 383 (654)
++... ..+.|||++|+||+.+++++. +.. ..++ .......+++.++
T Consensus 481 i~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~-~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 481 IHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLV-DAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred EEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEe-CHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 98643 359999999999999987653 111 0000 0000112233332
Q ss_pred ------------EecCCC-------Cccccccc---cCceeEEEEecCCCCCCCh-----------------hhhHhhhc
Q 048216 384 ------------AHEKLN-------DFGFLDDF---DSFLHSLLYLTSGSQYLDP-----------------TYCEKICK 424 (654)
Q Consensus 384 ------------l~~~~~-------~~~~~~~~---~~~Lr~L~l~~~~~~~~~~-----------------~~~~~~~~ 424 (654)
+. +.. ...++..+ .++||.|.+.++....... ..++..+.
T Consensus 553 aF~~m~~L~~L~~~-~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 553 AFKGMRNLLFLKFY-TKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred HHhcCccccEEEEe-cccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccc
Confidence 22 110 00122222 3456666666543321100 11233456
Q ss_pred ccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCc-cccccChhhhccccccceeccccccccCCcccchhcCC
Q 048216 425 MFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFS-YIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLEN 503 (654)
Q Consensus 425 ~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~-~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~ 503 (654)
.+++|+.|+|+++. .++.+|. + +.+++|++|+|++| .+..+|..+++|++|++|++++ |.....+|..+ +
T Consensus 632 ~l~~Lk~L~Ls~~~---~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~---c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 632 SLTGLRNIDLRGSK---NLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR---CENLEILPTGI-N 702 (1153)
T ss_pred cCCCCCEEECCCCC---CcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC---CCCcCccCCcC-C
Confidence 67778888887765 5777774 5 78888888888888 7788888888888888888543 33445556554 5
Q ss_pred CCCCCeEEEeccC---------------------Ccccchhhhcccc-------------------------cCCCCCe-
Q 048216 504 LNFISALHHCYCT---------------------EDILGRLLVQILI-------------------------LSCLESL- 536 (654)
Q Consensus 504 l~~L~~L~l~~~~---------------------~~~~~~~~~l~~l-------------------------~~~~~~L- 536 (654)
+++|+.|++++|. ...+|....+..+ ..++ +|
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~-sL~ 781 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP-SLT 781 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccc-cch
Confidence 6666666666552 2222210000000 0123 66
Q ss_pred EEEEeec--CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCC-----------------
Q 048216 537 KLANESK--MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSG----------------- 597 (654)
Q Consensus 537 ~L~l~~~--~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~----------------- 597 (654)
.|.++++ ...+|. ++..+ ++|+.|+|++|.. ...+|...++++|+.|++++|....
T Consensus 782 ~L~Ls~n~~l~~lP~---si~~L-~~L~~L~Ls~C~~-L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 782 RLFLSDIPSLVELPS---SIQNL-HKLEHLEIENCIN-LETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred heeCCCCCCccccCh---hhhCC-CCCCEEECCCCCC-cCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC
Confidence 6777654 346787 77788 8888888888763 2344444467777777777432211
Q ss_pred --CeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCccc
Q 048216 598 --RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGF 648 (654)
Q Consensus 598 --~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~l 648 (654)
..++.....+++|+.|++.+|++++.++.....+++|+.|.+++|++|..+
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 111222345677788888888888777777777778888888888777654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.3e-34 Score=293.14 Aligned_cols=203 Identities=28% Similarity=0.371 Sum_probs=161.8
Q ss_pred chhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc
Q 048216 106 LDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL 185 (654)
Q Consensus 106 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 185 (654)
||.++++|.+.|....++.++|+|+||||+||||||+++|++..++.+|+.++||.+++..+...++..|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999667899999999999999999999999777999999999999999999999999999999987441
Q ss_pred c-cccccChHHHHHHHHHHHcCCceEEEeccccC----------------c---------ccccccccCCCCcee-----
Q 048216 186 S-EIMKESSEMKKIILHEYVMTKRYLIVLDNFEN----------------G---------ENIGLDFVPTRGPLR----- 234 (654)
Q Consensus 186 ~-~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~----------------G---------~~v~~~~~~~~~~~~----- 234 (654)
. ...+.+. ....+++.|+++++||||||||+ | ..|+..+......++
T Consensus 81 ~~~~~~~~~--~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEE--LQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHH--HHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccc--ccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 2344455 89999999999999999999998 1 233333322111222
Q ss_pred ------------------------------E-ecCCchHHHHHHH-hhcccc-ccch---------hcc----CC---Cc
Q 048216 235 ------------------------------V-TYKGWPFYILYHR-SISQKE-NIEE---------ALD----EP---RG 265 (654)
Q Consensus 235 ------------------------------v-~c~GlPLai~~~g-~L~~~~-~~~~---------~l~----~~---~~ 265 (654)
+ +|+|+||||+++| +|+.+. ...| ... .. ..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6 9999999999999 996651 1111 111 11 77
Q ss_pred hhhhhhcCCchhHHHHHhhhccCCCCceeChHHHHHHHHHcCCCC
Q 048216 266 LQVVAYCMLPFYLKLFCLYLSVFPVHFDICTKQLYQLWIAEGFIP 310 (654)
Q Consensus 266 ~l~~sy~~L~~~~k~cfly~s~Fp~~~~i~~~~Li~~Wiaegfi~ 310 (654)
++.+||+.||+++|+||+|||+||+++.|+++.|+++|+|||||.
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 899999999999999999999999999999999999999999985
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=1.8e-20 Score=194.93 Aligned_cols=229 Identities=20% Similarity=0.172 Sum_probs=141.1
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+..|.+|.++.+... ..|.-+...+++-||+||+| .|..+|.++|-+|..|-+|||++|.+..||..+.+|
T Consensus 102 l~dLt~lDLShNqL~-----EvP~~LE~AKn~iVLNLS~N----~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-----EVPTNLEYAKNSIVLNLSYN----NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL 172 (1255)
T ss_pred cccceeeecchhhhh-----hcchhhhhhcCcEEEEcccC----ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence 444444544444432 22334445555555555555 899999999999999999999999999999999999
Q ss_pred ccccceeccc-------------ccccc---------CCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCC
Q 048216 478 SKLRYLNFGA-------------ITLPA---------HPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLES 535 (654)
Q Consensus 478 ~~L~~L~l~~-------------l~~l~---------~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~ 535 (654)
.+|++|.|++ ++.|+ ....+|.++..|.+|..++++.|+....| +.+-.++ +
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-----ecly~l~-~ 246 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-----ECLYKLR-N 246 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-----HHHhhhh-h
Confidence 9999999976 11111 34456777777788888888777554443 4455555 7
Q ss_pred e-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCC------
Q 048216 536 L-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGF------ 607 (654)
Q Consensus 536 L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f------ 607 (654)
| +|+++++ +.++.- ..... .+|++|+|+.|++ ...+..+.+|+.|+.|.+.+|...-+.++...+.+
T Consensus 247 LrrLNLS~N~iteL~~---~~~~W-~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 247 LRRLNLSGNKITELNM---TEGEW-ENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hheeccCcCceeeeec---cHHHH-hhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 7 7777653 334433 33444 5566666666654 22333455666666666665544444444444444
Q ss_pred -----------------ccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcc
Q 048216 608 -----------------PKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKG 647 (654)
Q Consensus 608 -----------------~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~ 647 (654)
+.|+.|.+.. +.|-.+|....-+|.|+.|++...|+|..
T Consensus 322 ~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 322 HAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred HhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccC
Confidence 4455555543 44444554455556666666666555553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.71 E-value=5.3e-17 Score=194.64 Aligned_cols=198 Identities=16% Similarity=0.207 Sum_probs=99.4
Q ss_pred cCChhHHhcCCCceEEcCCCccc-cccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcc-cch
Q 048216 445 SLPSSLLSSLLNLYTLDMPFSYI-DHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDI-LGR 522 (654)
Q Consensus 445 ~lP~~if~~L~~L~~L~L~~~~l-~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~ 522 (654)
.+|.++ +++.+|++|++++|.+ ..+|..++++++|++|++++ ......+|..++++++|+.|++++|.... +|.
T Consensus 155 ~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~---n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 155 EIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS---NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred cCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC---CCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 456666 6666666666666643 35666666666666666432 21222334444444444444444443221 110
Q ss_pred h-------------------hhcccccCCCCCe-EEEEeec-C-CCCCCcchhhhcCCCCccEEEEEeeccCCCCccccc
Q 048216 523 L-------------------LVQILILSCLESL-KLANESK-M-PRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALE 580 (654)
Q Consensus 523 ~-------------------~~l~~l~~~~~~L-~L~l~~~-~-~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~ 580 (654)
. .....+..++ +| .|.++++ + +.+|. ++..+ ++|++|+|++|.+....+..+.
T Consensus 231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~---~l~~l-~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPP---SIFSL-QKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred hHhcCCCCCEEECcCceeccccChhHhCCC-CCCEEECcCCeeeccCch---hHhhc-cCcCEEECcCCeeccCCChhHc
Confidence 0 0112333344 55 5555442 1 24455 55555 5666666665555444444455
Q ss_pred cCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCccccccc
Q 048216 581 KLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSF 652 (654)
Q Consensus 581 ~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l 652 (654)
++++|+.|++++|...+ .++.....+++|+.|+++++.-...+|...+.+++|+.|++++|.--..+|..+
T Consensus 306 ~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 306 QLQNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred CCCCCcEEECCCCccCC-cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 56666666665433322 222233456667777776654333455555566777777777663333355443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=4.9e-17 Score=194.97 Aligned_cols=194 Identities=21% Similarity=0.177 Sum_probs=128.6
Q ss_pred cCChhHHhcCCCceEEcCCCcccc-ccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchh
Q 048216 445 SLPSSLLSSLLNLYTLDMPFSYID-HTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRL 523 (654)
Q Consensus 445 ~lP~~if~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~ 523 (654)
.+|..+ +++.+|++|++++|.+. .+|..++++++|++|+++ +......+|..++++++|++|++++|.....
T Consensus 203 ~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~---~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--- 275 (968)
T PLN00113 203 QIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV---YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP--- 275 (968)
T ss_pred cCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc---CceeccccChhHhCCCCCCEEECcCCeeecc---
Confidence 344444 44445555555444332 344445555555555432 2222345666777777777777777644322
Q ss_pred hhcccccCCCCCe-EEEEeec-C-CCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCee
Q 048216 524 LVQILILSCLESL-KLANESK-M-PRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKL 600 (654)
Q Consensus 524 ~~l~~l~~~~~~L-~L~l~~~-~-~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l 600 (654)
....+..++ +| .|+++++ + +.+|. ++..+ ++|++|++++|.+....+..+..+++|+.|++++|... ..+
T Consensus 276 -~p~~l~~l~-~L~~L~Ls~n~l~~~~p~---~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 348 (968)
T PLN00113 276 -IPPSIFSLQ-KLISLDLSDNSLSGEIPE---LVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS-GEI 348 (968)
T ss_pred -CchhHhhcc-CcCEEECcCCeeccCCCh---hHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc-CcC
Confidence 224455666 89 9999874 3 36888 88899 99999999999987767777899999999999965543 334
Q ss_pred EEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCccccccc
Q 048216 601 ACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSF 652 (654)
Q Consensus 601 ~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l 652 (654)
+...+.+++|+.|+++++.-...+|.....+++|+.|.+.+|+-...+|..+
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence 4445678899999999854334555555678999999999875444566654
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=8e-16 Score=185.37 Aligned_cols=227 Identities=19% Similarity=0.160 Sum_probs=153.2
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCc-cccccChhhhc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFS-YIDHTADEFWK 476 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~-~l~~lP~~i~~ 476 (654)
+++|+.|.+.++... ..+ +.+..+++|+.|+|++|. .+..+|.++ ++|.+|+.|++++| .+..+|..+ +
T Consensus 633 l~~Lk~L~Ls~~~~l----~~i-p~ls~l~~Le~L~L~~c~---~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 633 LTGLRNIDLRGSKNL----KEI-PDLSMATNLETLKLSDCS---SLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred CCCCCEEECCCCCCc----CcC-CccccCCcccEEEecCCC---Cccccchhh-hccCCCCEEeCCCCCCcCccCCcC-C
Confidence 445555555443321 122 247789999999999997 789999999 99999999999999 899999877 8
Q ss_pred cccccceecccccccc-----------------CCcccchhcCCCC-------------------------------CCC
Q 048216 477 VSKLRYLNFGAITLPA-----------------HPGKYCNSLENLN-------------------------------FIS 508 (654)
Q Consensus 477 L~~L~~L~l~~l~~l~-----------------~~~~l~~~l~~l~-------------------------------~L~ 508 (654)
+++|++|+++++..++ ....+|..+ .++ +|+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence 9999999976532221 112233322 223 455
Q ss_pred eEEEeccCC-cccchhhhcccccCCCCCe-EEEEeec--CCCCCCcchhhhcCCCCccEEEEEeeccCC-----------
Q 048216 509 ALHHCYCTE-DILGRLLVQILILSCLESL-KLANESK--MPRRSNIILAEYQFPPSLTHLSFSNIELMD----------- 573 (654)
Q Consensus 509 ~L~l~~~~~-~~~~~~~~l~~l~~~~~~L-~L~l~~~--~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~----------- 573 (654)
.|++++|.. ..+| ..+..++ +| .|++++| +..+|. .+ .+ ++|++|+|++|....
T Consensus 782 ~L~Ls~n~~l~~lP-----~si~~L~-~L~~L~Ls~C~~L~~LP~---~~-~L-~sL~~L~Ls~c~~L~~~p~~~~nL~~ 850 (1153)
T PLN03210 782 RLFLSDIPSLVELP-----SSIQNLH-KLEHLEIENCINLETLPT---GI-NL-ESLESLDLSGCSRLRTFPDISTNISD 850 (1153)
T ss_pred heeCCCCCCccccC-----hhhhCCC-CCCEEECCCCCCcCeeCC---CC-Cc-cccCEEECCCCCccccccccccccCE
Confidence 555555432 2222 3466677 99 9999875 557887 44 46 777777777764211
Q ss_pred ---------CCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcC-------------ccc
Q 048216 574 ---------DPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGI-------------RAM 631 (654)
Q Consensus 574 ---------~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~-------------~~~ 631 (654)
..+..+..+++|+.|+|++ |.....++.....+++|+.|++++|.+|..++... ..+
T Consensus 851 L~Ls~n~i~~iP~si~~l~~L~~L~L~~-C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~ 929 (1153)
T PLN03210 851 LNLSRTGIEEVPWWIEKFSNLSFLDMNG-CNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKL 929 (1153)
T ss_pred eECCCCCCccChHHHhcCCCCCEEECCC-CCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccC
Confidence 1122356788999999984 44444566666778999999999999998765421 235
Q ss_pred cccceeeeecCcCCcc
Q 048216 632 PKLECLIINPCAHLKG 647 (654)
Q Consensus 632 p~L~~L~i~~C~~L~~ 647 (654)
|....+.+.+|.+|..
T Consensus 930 p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 930 PSTVCINFINCFNLDQ 945 (1153)
T ss_pred CchhccccccccCCCc
Confidence 5667778889988764
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=2e-17 Score=172.46 Aligned_cols=251 Identities=17% Similarity=0.191 Sum_probs=200.4
Q ss_pred cCceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhc
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSS 453 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~ 453 (654)
..+..||++. ++....+...+ ++.||++.+..+... +.-.|..+.+++-|.+||||+| .+++.|..+ .+
T Consensus 54 lqkLEHLs~~-HN~L~~vhGELs~Lp~LRsv~~R~N~LK---nsGiP~diF~l~dLt~lDLShN----qL~EvP~~L-E~ 124 (1255)
T KOG0444|consen 54 LQKLEHLSMA-HNQLISVHGELSDLPRLRSVIVRDNNLK---NSGIPTDIFRLKDLTILDLSHN----QLREVPTNL-EY 124 (1255)
T ss_pred Hhhhhhhhhh-hhhhHhhhhhhccchhhHHHhhhccccc---cCCCCchhcccccceeeecchh----hhhhcchhh-hh
Confidence 3567788887 44433344445 899999999988765 2334455667999999999999 899999999 99
Q ss_pred CCCceEEcCCCccccccChhh-hccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCC
Q 048216 454 LLNLYTLDMPFSYIDHTADEF-WKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSC 532 (654)
Q Consensus 454 L~~L~~L~L~~~~l~~lP~~i-~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~ 532 (654)
-+|+-+|+|++|+|..+|..+ .+|+-|-+|+|++ - ..+.+|+.+..+.+|++|.+++|..+.. .+..+.++
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~---N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hf----QLrQLPsm 196 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN---N-RLEMLPPQIRRLSMLQTLKLSNNPLNHF----QLRQLPSM 196 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhcccc---c-hhhhcCHHHHHHhhhhhhhcCCChhhHH----HHhcCccc
Confidence 999999999999999999874 5899999999654 2 5688999999999999999999976665 56677777
Q ss_pred CCCe-EEEEeec---CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCc
Q 048216 533 LESL-KLANESK---MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFP 608 (654)
Q Consensus 533 ~~~L-~L~l~~~---~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~ 608 (654)
. +| .|++++. +..+|. .+..+ .||..++|+.|++ ...+..+-++++|+.|+|++|.. .++....+...
T Consensus 197 t-sL~vLhms~TqRTl~N~Pt---sld~l-~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~i--teL~~~~~~W~ 268 (1255)
T KOG0444|consen 197 T-SLSVLHMSNTQRTLDNIPT---SLDDL-HNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKI--TELNMTEGEWE 268 (1255)
T ss_pred h-hhhhhhcccccchhhcCCC---chhhh-hhhhhccccccCC-CcchHHHhhhhhhheeccCcCce--eeeeccHHHHh
Confidence 7 88 8999873 457999 89999 9999999999985 45566788999999999996554 34444455567
Q ss_pred cccEEEEecCCCCcceeEcCccccccceeeeecCcCCc--ccccccC
Q 048216 609 KLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLK--GFLNSFG 653 (654)
Q Consensus 609 ~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~--~lP~~l~ 653 (654)
+|++|.++. +.|..+|.....+|.|++|.+.+. +|. +||.+||
T Consensus 269 ~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIG 313 (1255)
T KOG0444|consen 269 NLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIG 313 (1255)
T ss_pred hhhhhcccc-chhccchHHHhhhHHHHHHHhccC-cccccCCccchh
Confidence 888888887 678888877777888888888764 555 4888776
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.49 E-value=3.5e-15 Score=155.15 Aligned_cols=228 Identities=19% Similarity=0.147 Sum_probs=155.8
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCcccccc-Chhhhc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHT-ADEFWK 476 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~l-P~~i~~ 476 (654)
-.+++.|.+.++.... +-...|.++.+|-+|.|+.| .|+.+|..+|.+|++|+.|+|..|.++.. -..|..
T Consensus 172 ~~ni~~L~La~N~It~----l~~~~F~~lnsL~tlkLsrN----rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqg 243 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITT----LETGHFDSLNSLLTLKLSRN----RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQG 243 (873)
T ss_pred CCCceEEeeccccccc----cccccccccchheeeecccC----cccccCHHHhhhcchhhhhhccccceeeehhhhhcC
Confidence 3567777777666532 33456777777888888888 78888888877788888888888866554 345666
Q ss_pred cccccceeccc--ccccc------------------CCccc-chhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCC
Q 048216 477 VSKLRYLNFGA--ITLPA------------------HPGKY-CNSLENLNFISALHHCYCTEDILGRLLVQILILSCLES 535 (654)
Q Consensus 477 L~~L~~L~l~~--l~~l~------------------~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~ 535 (654)
|.+|+.|.+.. +++|. ...++ ..++-+|+.|+.|+++.|..+.+ ..+++.-.+ .
T Consensus 244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri----h~d~Wsftq-k 318 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI----HIDSWSFTQ-K 318 (873)
T ss_pred chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee----ecchhhhcc-c
Confidence 66666666532 22221 11111 24567789999999999888777 677888777 9
Q ss_pred e-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCC--CeeEEcCCCCcccc
Q 048216 536 L-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSG--RKLACSSDGFPKLK 611 (654)
Q Consensus 536 L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~--~~l~~~~~~f~~L~ 611 (654)
| .|.++. .+.++|+. .+..| +.|+.|.|+.|.+....-..+..+.+|+.|+|++|.... +.-.....++++|+
T Consensus 319 L~~LdLs~N~i~~l~~~--sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEG--SFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred ceeEeccccccccCChh--HHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 9 999986 56677763 55667 888888888888755555567778888888888554321 11112234588888
Q ss_pred EEEEecCCCCcceeE-cCccccccceeeeecC
Q 048216 612 VLHLKSMLWLEEWTM-GIRAMPKLECLIINPC 642 (654)
Q Consensus 612 ~L~l~~~~~l~~l~~-~~~~~p~L~~L~i~~C 642 (654)
.|++.+ ++++.++. ....+++|++|++.+.
T Consensus 396 kL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 396 KLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred heeecC-ceeeecchhhhccCcccceecCCCC
Confidence 888887 67777764 2445778888887764
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=7.1e-15 Score=130.58 Aligned_cols=130 Identities=20% Similarity=0.259 Sum_probs=95.8
Q ss_pred hcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcC
Q 048216 423 CKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLE 502 (654)
Q Consensus 423 ~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~ 502 (654)
+-.+.+.+.|-||+| .+..+|+.| .+|.||++|++.+|+++++|.+|++|++||+|+++- .....+|.+++
T Consensus 29 Lf~~s~ITrLtLSHN----Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgm----nrl~~lprgfg 99 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN----KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM----NRLNILPRGFG 99 (264)
T ss_pred ccchhhhhhhhcccC----ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecch----hhhhcCccccC
Confidence 446777888999999 899999999 999999999999999999999999999999999742 24466788888
Q ss_pred CCCCCCeEEEeccCCcccchhhhcccccCCCCCeEEEEeecCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccC
Q 048216 503 NLNFISALHHCYCTEDILGRLLVQILILSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKL 582 (654)
Q Consensus 503 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~L~l~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l 582 (654)
.++.|+.|+++.|..+.- .+|. .+..+ ..|+-|+|++|.+ +..++.+++|
T Consensus 100 s~p~levldltynnl~e~-------------------------~lpg---nff~m-~tlralyl~dndf-e~lp~dvg~l 149 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNEN-------------------------SLPG---NFFYM-TTLRALYLGDNDF-EILPPDVGKL 149 (264)
T ss_pred CCchhhhhhccccccccc-------------------------cCCc---chhHH-HHHHHHHhcCCCc-ccCChhhhhh
Confidence 888888888888743221 1333 33344 5555566666654 3334445666
Q ss_pred cccceEEEe
Q 048216 583 PVLQVLKLK 591 (654)
Q Consensus 583 ~~L~~L~L~ 591 (654)
.+|+.|.+.
T Consensus 150 t~lqil~lr 158 (264)
T KOG0617|consen 150 TNLQILSLR 158 (264)
T ss_pred cceeEEeec
Confidence 666665555
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.37 E-value=3.1e-15 Score=149.27 Aligned_cols=212 Identities=20% Similarity=0.184 Sum_probs=134.4
Q ss_pred hhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccc-------------
Q 048216 421 KICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGA------------- 487 (654)
Q Consensus 421 ~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~------------- 487 (654)
+.+.++..|.||++++| .+.++|.+| +++..++.|+.+++++.++|+.++++.+|++|+.+.
T Consensus 62 ~dl~nL~~l~vl~~~~n----~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDN----KLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRL 136 (565)
T ss_pred HhhhcccceeEEEeccc----hhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHH
Confidence 44455555666666666 555666666 666666666666666666666666666666555422
Q ss_pred -------cccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCC
Q 048216 488 -------ITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFP 558 (654)
Q Consensus 488 -------l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp 558 (654)
.++- ....+|+++.++.+|..|.+.+|....+| +..-.+. .| +|+... .++.+|. .++.+
T Consensus 137 ~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~-----~~~i~m~-~L~~ld~~~N~L~tlP~---~lg~l- 205 (565)
T KOG0472|consen 137 LDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALP-----ENHIAMK-RLKHLDCNSNLLETLPP---ELGGL- 205 (565)
T ss_pred hhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCC-----HHHHHHH-HHHhcccchhhhhcCCh---hhcch-
Confidence 0000 33445555555555555555555443332 1111133 55 666654 3457888 78888
Q ss_pred CCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEc-CCCCccccEEEEecCCCCcceeEcCcccccccee
Q 048216 559 PSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACS-SDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECL 637 (654)
Q Consensus 559 ~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~-~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L 637 (654)
.+|..|+|..|++ ..+|.++.+..|++|++..|... .++.. ...+++|..|++.+ ++++++|.+..-+.+|++|
T Consensus 206 ~~L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 206 ESLELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERL 280 (565)
T ss_pred hhhHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhh
Confidence 8888888888875 45667888888888888743321 12211 23578899999998 7899999888888999999
Q ss_pred eeecCcCCcccccccCC
Q 048216 638 IINPCAHLKGFLNSFGA 654 (654)
Q Consensus 638 ~i~~C~~L~~lP~~l~~ 654 (654)
++++ ..+..+|..+||
T Consensus 281 DlSN-N~is~Lp~sLgn 296 (565)
T KOG0472|consen 281 DLSN-NDISSLPYSLGN 296 (565)
T ss_pred cccC-CccccCCccccc
Confidence 9998 488889988875
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.35 E-value=1.6e-14 Score=144.23 Aligned_cols=248 Identities=17% Similarity=0.135 Sum_probs=162.1
Q ss_pred ceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCC
Q 048216 378 NVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLL 455 (654)
Q Consensus 378 ~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~ 455 (654)
+...+.++ .+....+| .+ |+.|..|++..+... -.+....+++.+|.+|||..| .++++|..+ +.|.
T Consensus 207 ~L~~LyL~-~Nki~~lP-ef~gcs~L~Elh~g~N~i~----~lpae~~~~L~~l~vLDLRdN----klke~Pde~-clLr 275 (565)
T KOG0472|consen 207 SLELLYLR-RNKIRFLP-EFPGCSLLKELHVGENQIE----MLPAEHLKHLNSLLVLDLRDN----KLKEVPDEI-CLLR 275 (565)
T ss_pred hhHHHHhh-hcccccCC-CCCccHHHHHHHhcccHHH----hhHHHHhcccccceeeecccc----ccccCchHH-HHhh
Confidence 34444555 44444344 34 777777776666543 234456679999999999999 899999999 9999
Q ss_pred CceEEcCCCccccccChhhhccccccceeccc------------------ccccc----------------CCcccc---
Q 048216 456 NLYTLDMPFSYIDHTADEFWKVSKLRYLNFGA------------------ITLPA----------------HPGKYC--- 498 (654)
Q Consensus 456 ~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~------------------l~~l~----------------~~~~l~--- 498 (654)
+|++||+++|.+..+|.++++| .|+.|-+.+ +..++ .....+
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 9999999999999999999999 999998865 11111 000111
Q ss_pred -hhcCCCCCCCeEEEeccCCcccchh--------------hhcccccCCCCCe--------EEEEeec-CCCCCCcchhh
Q 048216 499 -NSLENLNFISALHHCYCTEDILGRL--------------LVQILILSCLESL--------KLANESK-MPRRSNIILAE 554 (654)
Q Consensus 499 -~~l~~l~~L~~L~l~~~~~~~~~~~--------------~~l~~l~~~~~~L--------~L~l~~~-~~~lp~~~~~~ 554 (654)
.....+.+.+.|+++.-.....|.+ ..-..+..+|..| .+.++.+ ++-+|. .+
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~---~l 431 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL---EL 431 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH---HH
Confidence 1223345666676665533333321 0001122222111 2223332 234555 66
Q ss_pred hcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCC---------------------CeeE-EcCCCCccccE
Q 048216 555 YQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSG---------------------RKLA-CSSDGFPKLKV 612 (654)
Q Consensus 555 ~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~---------------------~~l~-~~~~~f~~L~~ 612 (654)
..+ ++|+.|+|++|.+ .+.+..++.+-.|+.|+|+.|.|.. ..+. .....+.+|+.
T Consensus 432 ~~l-~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQL-QKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhh-hcceeeecccchh-hhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 788 8999999988875 4555567788889999998765421 0011 11245788999
Q ss_pred EEEecCCCCcceeEcCccccccceeeeecCc
Q 048216 613 LHLKSMLWLEEWTMGIRAMPKLECLIINPCA 643 (654)
Q Consensus 613 L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~ 643 (654)
|++.+ +.+..+|...|.|.+|++|.+.+.|
T Consensus 510 LDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 510 LDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eccCC-CchhhCChhhccccceeEEEecCCc
Confidence 99997 6789999999999999999999975
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.22 E-value=1.2e-11 Score=129.15 Aligned_cols=231 Identities=18% Similarity=0.104 Sum_probs=167.1
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccC-hhhhc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTA-DEFWK 476 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP-~~i~~ 476 (654)
.+..++|.+.++... .+-...|.++++|+.++|.+| .+..+|... +...||+.|+|.+|.+.++- +.+.-
T Consensus 77 p~~t~~LdlsnNkl~----~id~~~f~nl~nLq~v~l~~N----~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLS----HIDFEFFYNLPNLQEVNLNKN----ELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred ccceeeeeccccccc----cCcHHHHhcCCcceeeeeccc----hhhhccccc-ccccceeEEeeeccccccccHHHHHh
Confidence 788999999988864 355678899999999999999 899999988 88889999999999888774 56788
Q ss_pred cccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchh
Q 048216 477 VSKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILA 553 (654)
Q Consensus 477 L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~ 553 (654)
+..||.|+|+. + ....+| .++..-.++++|++++|....+ ..+.+..+. +| .|.++. .+..+|.. .
T Consensus 148 l~alrslDLSr--N--~is~i~~~sfp~~~ni~~L~La~N~It~l----~~~~F~~ln-sL~tlkLsrNrittLp~r--~ 216 (873)
T KOG4194|consen 148 LPALRSLDLSR--N--LISEIPKPSFPAKVNIKKLNLASNRITTL----ETGHFDSLN-SLLTLKLSRNRITTLPQR--S 216 (873)
T ss_pred Hhhhhhhhhhh--c--hhhcccCCCCCCCCCceEEeecccccccc----ccccccccc-hheeeecccCcccccCHH--H
Confidence 89999999754 1 222233 3455567999999999988777 556777777 88 999986 56778871 3
Q ss_pred hhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccC---CCeeE--------------------EcCCCCccc
Q 048216 554 EYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYS---GRKLA--------------------CSSDGFPKL 610 (654)
Q Consensus 554 ~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~---~~~l~--------------------~~~~~f~~L 610 (654)
+..| +.|+.|+|..|.+.....-.+.+|++|+.|.|..|... ...+. ...-++.+|
T Consensus 217 Fk~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 217 FKRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred hhhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh
Confidence 4458 99999999999876555566788888888888755421 00010 011135666
Q ss_pred cEEEEecCCCCcceeEcCc-cccccceeeeecCcCCcccccc
Q 048216 611 KVLHLKSMLWLEEWTMGIR-AMPKLECLIINPCAHLKGFLNS 651 (654)
Q Consensus 611 ~~L~l~~~~~l~~l~~~~~-~~p~L~~L~i~~C~~L~~lP~~ 651 (654)
+.|+++. +.+..+....- ..++|+.|++++ .++.++|++
T Consensus 296 ~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~ 335 (873)
T KOG4194|consen 296 EQLDLSY-NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEG 335 (873)
T ss_pred hhhccch-hhhheeecchhhhcccceeEeccc-cccccCChh
Confidence 6666665 44555443322 247788888877 377777764
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.21 E-value=2.2e-11 Score=138.13 Aligned_cols=222 Identities=15% Similarity=0.144 Sum_probs=94.3
Q ss_pred CceeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCC
Q 048216 377 ENVKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLN 456 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~ 456 (654)
..++.|.+. ++....++..+.++|++|.+.++.... + +..+ ...|+.|+|++| .+..+|.++ . .+
T Consensus 199 ~~L~~L~Ls-~N~LtsLP~~l~~nL~~L~Ls~N~Lts----L-P~~l--~~~L~~L~Ls~N----~L~~LP~~l-~--s~ 263 (754)
T PRK15370 199 EQITTLILD-NNELKSLPENLQGNIKTLYANSNQLTS----I-PATL--PDTIQEMELSIN----RITELPERL-P--SA 263 (754)
T ss_pred cCCcEEEec-CCCCCcCChhhccCCCEEECCCCcccc----C-Chhh--hccccEEECcCC----ccCcCChhH-h--CC
Confidence 345555555 333333333334455555555443321 1 1111 124555555555 455555544 2 34
Q ss_pred ceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe
Q 048216 457 LYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL 536 (654)
Q Consensus 457 L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L 536 (654)
|++|++++|++..+|..+. .+|++|++++ . ....+|..+. ++|+.|++++|....+| .. .++ +|
T Consensus 264 L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~---N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP-----~~--l~~-sL 327 (754)
T PRK15370 264 LQSLDLFHNKISCLPENLP--EELRYLSVYD---N-SIRTLPAHLP--SGITHLNVQSNSLTALP-----ET--LPP-GL 327 (754)
T ss_pred CCEEECcCCccCccccccC--CCCcEEECCC---C-ccccCcccch--hhHHHHHhcCCccccCC-----cc--ccc-cc
Confidence 5555555555555554443 2455555432 1 1222332221 24555555554333332 00 112 55
Q ss_pred -EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEE
Q 048216 537 -KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLH 614 (654)
Q Consensus 537 -~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~ 614 (654)
.|.+.+ .+..+|. . +|++|+.|+|++|++... +..+ .++|+.|+|++|... .++.. -.++|+.|+
T Consensus 328 ~~L~Ls~N~Lt~LP~---~---l~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt--~LP~~--l~~sL~~Ld 394 (754)
T PRK15370 328 KTLEAGENALTSLPA---S---LPPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALT--NLPEN--LPAALQIMQ 394 (754)
T ss_pred eeccccCCccccCCh---h---hcCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCC--CCCHh--HHHHHHHHh
Confidence 555544 2334443 2 225566666666554321 1111 245556666543322 11111 112455555
Q ss_pred EecCCCCcceeEcC----ccccccceeeeecCc
Q 048216 615 LKSMLWLEEWTMGI----RAMPKLECLIINPCA 643 (654)
Q Consensus 615 l~~~~~l~~l~~~~----~~~p~L~~L~i~~C~ 643 (654)
+++ +++..+|... +.+|++..|.+.+.|
T Consensus 395 Ls~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 395 ASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 555 3444443221 223555555555543
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=3.4e-13 Score=119.99 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=121.8
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
++++..|.++.+... ..++-+..+++|.+|++++| .|.++|.+| +.|+.|+.|++.-|.+..+|.+|+.+
T Consensus 32 ~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nn----qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNN----QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccc----hhhhcChhh-hhchhhhheecchhhhhcCccccCCC
Confidence 667777777777654 45677889999999999999 899999999 99999999999999999999999999
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhh
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEY 555 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~ 555 (654)
+-|+.|++.. .++ +...+|..+-.|+.|+.|+++.|+.+.+| ..+..+. +| .|.+.. .+-.+|. .++
T Consensus 102 p~levldlty-nnl-~e~~lpgnff~m~tlralyl~dndfe~lp-----~dvg~lt-~lqil~lrdndll~lpk---eig 170 (264)
T KOG0617|consen 102 PALEVLDLTY-NNL-NENSLPGNFFYMTTLRALYLGDNDFEILP-----PDVGKLT-NLQILSLRDNDLLSLPK---EIG 170 (264)
T ss_pred chhhhhhccc-ccc-ccccCCcchhHHHHHHHHHhcCCCcccCC-----hhhhhhc-ceeEEeeccCchhhCcH---HHH
Confidence 9999999764 444 66778888888999999999998877775 3344444 66 666654 3446777 677
Q ss_pred cCCCCccEEEEEeecc
Q 048216 556 QFPPSLTHLSFSNIEL 571 (654)
Q Consensus 556 ~lp~~L~~L~L~~~~l 571 (654)
.+ ..|+.|.+.+|.+
T Consensus 171 ~l-t~lrelhiqgnrl 185 (264)
T KOG0617|consen 171 DL-TRLRELHIQGNRL 185 (264)
T ss_pred HH-HHHHHHhccccee
Confidence 77 7788888887775
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.14 E-value=1.4e-10 Score=131.03 Aligned_cols=217 Identities=15% Similarity=0.036 Sum_probs=124.8
Q ss_pred cCceeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCC
Q 048216 376 RENVKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLL 455 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~ 455 (654)
+..++.|.+. ++....++. ..++|++|.+.++.... + +. ..++|+.|+|++| .+..+|.. ..
T Consensus 221 ~~~L~~L~L~-~N~Lt~LP~-lp~~Lk~LdLs~N~Lts----L-P~---lp~sL~~L~Ls~N----~L~~Lp~l----p~ 282 (788)
T PRK15387 221 PAHITTLVIP-DNNLTSLPA-LPPELRTLEVSGNQLTS----L-PV---LPPGLLELSIFSN----PLTHLPAL----PS 282 (788)
T ss_pred hcCCCEEEcc-CCcCCCCCC-CCCCCcEEEecCCccCc----c-cC---cccccceeeccCC----chhhhhhc----hh
Confidence 3467888888 544443332 26789999998876542 1 21 2356777777777 56666542 23
Q ss_pred CceEEcCCCccccccChhhhccccccceecccccccc-----------------CCcccchhcCCCCCCCeEEEeccCCc
Q 048216 456 NLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPA-----------------HPGKYCNSLENLNFISALHHCYCTED 518 (654)
Q Consensus 456 ~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~-----------------~~~~l~~~l~~l~~L~~L~l~~~~~~ 518 (654)
+|+.|++++|.+..+|.. +++|++|++++ .++. ....+|.. ..+|+.|++++|...
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA 355 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCC-CccccCCCCcccccccccccCcccccccc---ccccceEecCCCccC
Confidence 455566666666666542 34566666533 1110 11112210 135666666666444
Q ss_pred ccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccC
Q 048216 519 ILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYS 596 (654)
Q Consensus 519 ~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~ 596 (654)
.+| ..+.+| .|.+++ .+..+|. +|++|+.|+|++|.+.. +|.+ .++|+.|++++|...
T Consensus 356 ~LP---------~lp~~L~~L~Ls~N~L~~LP~-------l~~~L~~LdLs~N~Lt~--LP~l--~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 356 SLP---------TLPSELYKLWAYNNRLTSLPA-------LPSGLKELIVSGNRLTS--LPVL--PSELKELMVSGNRLT 415 (788)
T ss_pred CCC---------CCCcccceehhhccccccCcc-------cccccceEEecCCcccC--CCCc--ccCCCEEEccCCcCC
Confidence 443 112256 666654 3345554 22677888888887642 3322 357888888855432
Q ss_pred CCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCc
Q 048216 597 GRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCA 643 (654)
Q Consensus 597 ~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~ 643 (654)
.++ ..+.+|+.|++++ +++..+|...+.+++|+.|++++++
T Consensus 416 --sIP---~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 416 --SLP---MLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --CCC---cchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 222 1245678888887 5678887777788889999998874
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.13 E-value=8.9e-13 Score=144.58 Aligned_cols=168 Identities=21% Similarity=0.182 Sum_probs=92.0
Q ss_pred CCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccch
Q 048216 443 LKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGR 522 (654)
Q Consensus 443 i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ 522 (654)
+..+|+.+ +.+.+|+.|+..+|.+.++|..+..+++|+.|.+ ..+ ..+.+|..+..+++|++|++..|....+|+
T Consensus 253 l~~lp~wi-~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~---~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 253 LSNLPEWI-GACANLEALNANHNRLVALPLRISRITSLVSLSA---AYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred hhcchHHH-HhcccceEecccchhHHhhHHHHhhhhhHHHHHh---hhh-hhhhCCCcccccceeeeeeehhccccccch
Confidence 34455555 5555555555555555555555555555555553 222 445667777788888888888886665552
Q ss_pred hhhcccccCCCCCe-EEEEee-cCCCCCCcchhh-hcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCe
Q 048216 523 LLVQILILSCLESL-KLANES-KMPRRSNIILAE-YQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRK 599 (654)
Q Consensus 523 ~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~-~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~ 599 (654)
..+..+...| .|..+. .+..+|. .- ..+ +.|+.|++.+|.++....|.+.++++|+.|+|++|-. . .
T Consensus 328 ----~~l~v~~~~l~~ln~s~n~l~~lp~---~~e~~~-~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL-~-~ 397 (1081)
T KOG0618|consen 328 ----NFLAVLNASLNTLNVSSNKLSTLPS---YEENNH-AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL-N-S 397 (1081)
T ss_pred ----HHHhhhhHHHHHHhhhhcccccccc---ccchhh-HHHHHHHHhcCcccccchhhhccccceeeeeeccccc-c-c
Confidence 1111111012 333322 2223332 11 134 6677777777777777777777777777777774422 1 1
Q ss_pred eEE-cCCCCccccEEEEecCCCCcceeE
Q 048216 600 LAC-SSDGFPKLKVLHLKSMLWLEEWTM 626 (654)
Q Consensus 600 l~~-~~~~f~~L~~L~l~~~~~l~~l~~ 626 (654)
++. ....|+.|++|.+++ ++|+.+|.
T Consensus 398 fpas~~~kle~LeeL~LSG-NkL~~Lp~ 424 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSG-NKLTTLPD 424 (1081)
T ss_pred CCHHHHhchHHhHHHhccc-chhhhhhH
Confidence 111 123456666666666 45555543
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.12 E-value=9.1e-12 Score=136.78 Aligned_cols=237 Identities=19% Similarity=0.160 Sum_probs=128.6
Q ss_pred CceeEEEEecCCCCccccccc-cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCC
Q 048216 377 ENVKRFTAHEKLNDFGFLDDF-DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLL 455 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~ 455 (654)
.+.+++... .+........+ ..++.++.+..+... .++..+..+.+|..|+..+| .+..+|..| ...+
T Consensus 219 ~~l~~L~a~-~n~l~~~~~~p~p~nl~~~dis~n~l~-----~lp~wi~~~~nle~l~~n~N----~l~~lp~ri-~~~~ 287 (1081)
T KOG0618|consen 219 PSLTALYAD-HNPLTTLDVHPVPLNLQYLDISHNNLS-----NLPEWIGACANLEALNANHN----RLVALPLRI-SRIT 287 (1081)
T ss_pred cchheeeec-cCcceeeccccccccceeeecchhhhh-----cchHHHHhcccceEecccch----hHHhhHHHH-hhhh
Confidence 345666665 33222222233 567777777766654 23477788888888888888 777788777 7777
Q ss_pred CceEEcCCCccccccChhhhccccccceeccc----------------------------------------------cc
Q 048216 456 NLYTLDMPFSYIDHTADEFWKVSKLRYLNFGA----------------------------------------------IT 489 (654)
Q Consensus 456 ~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~----------------------------------------------l~ 489 (654)
+|+.|++..|.++.+|.....+++|++|+|.. +.
T Consensus 288 ~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 288 SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred hHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 78888877777777777777777777777643 00
Q ss_pred cccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEE
Q 048216 490 LPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFS 567 (654)
Q Consensus 490 ~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~ 567 (654)
+-.......+.+.++.+|+.|++++|....+| -..+..++ .| .|.++| .+..+|+ .+..+ +.|++|...
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp----as~~~kle-~LeeL~LSGNkL~~Lp~---tva~~-~~L~tL~ah 438 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP----ASKLRKLE-ELEELNLSGNKLTTLPD---TVANL-GRLHTLRAH 438 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCC----HHHHhchH-HhHHHhcccchhhhhhH---HHHhh-hhhHHHhhc
Confidence 00011112233444455555555555444442 12233333 44 555555 2344554 44445 555555555
Q ss_pred eeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeee
Q 048216 568 NIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLII 639 (654)
Q Consensus 568 ~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i 639 (654)
+|.+ ..+|.+.+++.|+.++++.|......+..... -|+|++|++++... ..++...||.|+.+..
T Consensus 439 sN~l--~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~---l~~d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 439 SNQL--LSFPELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR---LVFDHKTLKVLKSLSQ 504 (1081)
T ss_pred CCce--eechhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc---cccchhhhHHhhhhhh
Confidence 5543 23345566666666666643332222221111 15666666666432 2233344444444443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=9.5e-11 Score=133.05 Aligned_cols=225 Identities=16% Similarity=0.157 Sum_probs=151.1
Q ss_pred eEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceE
Q 048216 380 KRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYT 459 (654)
Q Consensus 380 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~ 459 (654)
..+.+. +.....+|..+.++++.|.+.++.... ++... +++|+.|++++| .+..+|..+ . .+|+.
T Consensus 181 ~~L~L~-~~~LtsLP~~Ip~~L~~L~Ls~N~Lts----LP~~l---~~nL~~L~Ls~N----~LtsLP~~l-~--~~L~~ 245 (754)
T PRK15370 181 TELRLK-ILGLTTIPACIPEQITTLILDNNELKS----LPENL---QGNIKTLYANSN----QLTSIPATL-P--DTIQE 245 (754)
T ss_pred eEEEeC-CCCcCcCCcccccCCcEEEecCCCCCc----CChhh---ccCCCEEECCCC----ccccCChhh-h--ccccE
Confidence 345555 433344555456788999988876542 22222 247899999999 888898876 3 47899
Q ss_pred EcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EE
Q 048216 460 LDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KL 538 (654)
Q Consensus 460 L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L 538 (654)
|+|++|.+..+|..+. .+|+.|++++ . ....+|..+. ++|+.|++++|....+| ..+ ++ +| .|
T Consensus 246 L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N---~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP-----~~l--p~-sL~~L 309 (754)
T PRK15370 246 MELSINRITELPERLP--SALQSLDLFH-N---KISCLPENLP--EELRYLSVYDNSIRTLP-----AHL--PS-GITHL 309 (754)
T ss_pred EECcCCccCcCChhHh--CCCCEEECcC-C---ccCccccccC--CCCcEEECCCCccccCc-----ccc--hh-hHHHH
Confidence 9999998889988775 4788998653 2 3345666554 48999999988665554 111 23 67 88
Q ss_pred EEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEec
Q 048216 539 ANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKS 617 (654)
Q Consensus 539 ~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~ 617 (654)
++++ .+..+|. . +|++|+.|++++|.++.. +..+ .++|+.|+|++|.+. .++. ...++|+.|++++
T Consensus 310 ~Ls~N~Lt~LP~---~---l~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~--~LP~--~lp~~L~~LdLs~ 376 (754)
T PRK15370 310 NVQSNSLTALPE---T---LPPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQIT--VLPE--TLPPTITTLDVSR 376 (754)
T ss_pred HhcCCccccCCc---c---ccccceeccccCCccccC-Chhh--cCcccEEECCCCCCC--cCCh--hhcCCcCEEECCC
Confidence 8876 3456675 3 348899999999987542 2222 268999999965443 2222 2246899999998
Q ss_pred CCCCcceeEcCccccccceeeeecCcCCccccccc
Q 048216 618 MLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSF 652 (654)
Q Consensus 618 ~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l 652 (654)
+ ++..+|... .++|+.|++++| +|..+|..+
T Consensus 377 N-~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~sl 407 (754)
T PRK15370 377 N-ALTNLPENL--PAALQIMQASRN-NLVRLPESL 407 (754)
T ss_pred C-cCCCCCHhH--HHHHHHHhhccC-CcccCchhH
Confidence 4 677776432 347889999886 778887654
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.01 E-value=1.1e-09 Score=124.00 Aligned_cols=218 Identities=19% Similarity=0.094 Sum_probs=130.6
Q ss_pred EEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEE
Q 048216 381 RFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTL 460 (654)
Q Consensus 381 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L 460 (654)
.+.+. +.....+|..+.++++.|.+..+.... ++ ...++|++|+|++| .++.+|.. ..+|+.|
T Consensus 205 ~LdLs-~~~LtsLP~~l~~~L~~L~L~~N~Lt~-----LP---~lp~~Lk~LdLs~N----~LtsLP~l----p~sL~~L 267 (788)
T PRK15387 205 VLNVG-ESGLTTLPDCLPAHITTLVIPDNNLTS-----LP---ALPPELRTLEVSGN----QLTSLPVL----PPGLLEL 267 (788)
T ss_pred EEEcC-CCCCCcCCcchhcCCCEEEccCCcCCC-----CC---CCCCCCcEEEecCC----ccCcccCc----cccccee
Confidence 45555 444444666666789999998877642 22 23578999999999 88999853 4688999
Q ss_pred cCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEE
Q 048216 461 DMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLA 539 (654)
Q Consensus 461 ~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~ 539 (654)
++++|.+..+|... .+|+.|++++ . ....+|.. .++|+.|++++|....+| ..+.+| .|.
T Consensus 268 ~Ls~N~L~~Lp~lp---~~L~~L~Ls~---N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp---------~lp~~L~~L~ 328 (788)
T PRK15387 268 SIFSNPLTHLPALP---SGLCKLWIFG---N-QLTSLPVL---PPGLQELSVSDNQLASLP---------ALPSELCKLW 328 (788)
T ss_pred eccCCchhhhhhch---hhcCEEECcC---C-cccccccc---ccccceeECCCCccccCC---------CCcccccccc
Confidence 99999999888644 5677787543 2 23345542 367999999988655543 111245 555
Q ss_pred Eee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCC------------------CccccccCcccceEEEeecccCCCee
Q 048216 540 NES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDD------------------PMPALEKLPVLQVLKLKQNSYSGRKL 600 (654)
Q Consensus 540 l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~------------------~l~~l~~l~~L~~L~L~~~~~~~~~l 600 (654)
+.+ .+..+|. +|.+|+.|+|++|++... .+|.+ .++|+.|+|++|.... +
T Consensus 329 Ls~N~L~~LP~-------lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~--L 397 (788)
T PRK15387 329 AYNNQLTSLPT-------LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS--L 397 (788)
T ss_pred cccCccccccc-------cccccceEecCCCccCCCCCCCcccceehhhccccccCccc--ccccceEEecCCcccC--C
Confidence 544 2333443 224555555555554321 11211 2356666666443321 1
Q ss_pred EEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcccccccC
Q 048216 601 ACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSFG 653 (654)
Q Consensus 601 ~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l~ 653 (654)
+ ..+++|+.|++++ +.+..+|. .+.+|+.|+++++ +++.||..++
T Consensus 398 P---~l~s~L~~LdLS~-N~LssIP~---l~~~L~~L~Ls~N-qLt~LP~sl~ 442 (788)
T PRK15387 398 P---VLPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLI 442 (788)
T ss_pred C---CcccCCCEEEccC-CcCCCCCc---chhhhhhhhhccC-cccccChHHh
Confidence 1 1235677777776 34666553 2346777777774 6777887653
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=2e-09 Score=124.36 Aligned_cols=238 Identities=17% Similarity=0.128 Sum_probs=144.2
Q ss_pred ccccc-cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCC-CCcCChhHHhcCCCceEEcCCCc-cccc
Q 048216 393 FLDDF-DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPS-LKSLPSSLLSSLLNLYTLDMPFS-YIDH 469 (654)
Q Consensus 393 ~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~-i~~lP~~if~~L~~L~~L~L~~~-~l~~ 469 (654)
.+... ....|...+.++.... . ..-...+.|+.|-+.++. . +..++...|-.++.|++|||++| .+.+
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~-----~-~~~~~~~~L~tLll~~n~---~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEH-----I-AGSSENPKLRTLLLQRNS---DWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred cccccchhheeEEEEeccchhh-----c-cCCCCCCccceEEEeecc---hhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 34444 6778888888776531 1 112334469999999883 2 77888887799999999999999 9999
Q ss_pred cChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeecC-CCC
Q 048216 470 TADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESKM-PRR 547 (654)
Q Consensus 470 lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~-~~l 547 (654)
||++|++|.+||+|+++. + ....+|.++++++.|.+|++..+..... .......++ +| .|.+.... ..-
T Consensus 587 LP~~I~~Li~LryL~L~~-t---~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~----~~~i~~~L~-~Lr~L~l~~s~~~~~ 657 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSD-T---GISHLPSGLGNLKKLIYLNLEVTGRLES----IPGILLELQ-SLRVLRLPRSALSND 657 (889)
T ss_pred CChHHhhhhhhhcccccC-C---CccccchHHHHHHhhheecccccccccc----ccchhhhcc-cccEEEeeccccccc
Confidence 999999999999999764 2 4568899999999999999987653222 112222244 66 66664321 100
Q ss_pred CCcchhhhcCCCCccEEEEEeecc-------------------------CCCCccccccCcccceEEEeecccCCCeeE-
Q 048216 548 SNIILAEYQFPPSLTHLSFSNIEL-------------------------MDDPMPALEKLPVLQVLKLKQNSYSGRKLA- 601 (654)
Q Consensus 548 p~~~~~~~~lp~~L~~L~L~~~~l-------------------------~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~- 601 (654)
...+..+..+ .+|+.++...+.. .......++.+.+|+.|.+.++......+.
T Consensus 658 ~~~l~el~~L-e~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 658 KLLLKELENL-EHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred hhhHHhhhcc-cchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccc
Confidence 0001123334 4444444433321 122334456677777777774332111110
Q ss_pred ---EcCC-CCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCccccc
Q 048216 602 ---CSSD-GFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLN 650 (654)
Q Consensus 602 ---~~~~-~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~ 650 (654)
.... .|++|..+.+.+|..++..... ...|+|+.|.+.+|+.+..+.+
T Consensus 737 ~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 737 EESLIVLLCFPNLSKVSILNCHMLRDLTWL-LFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccccchhhhHHHHHHHHhhccccccccchh-hccCcccEEEEecccccccCCC
Confidence 0011 2556666666666555443222 3357788888888877766443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.84 E-value=6.3e-10 Score=111.73 Aligned_cols=236 Identities=18% Similarity=0.107 Sum_probs=130.3
Q ss_pred cccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCC-cccccc
Q 048216 392 GFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPF-SYIDHT 470 (654)
Q Consensus 392 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~-~~l~~l 470 (654)
++|..+.+....+.+..+... .+++.+|+.+++||.|||++| .|..+-+.-|..|.+|..|-+-+ |+|+.+
T Consensus 60 eVP~~LP~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N----~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKN----NISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred cCcccCCCcceEEEeccCCcc----cCChhhccchhhhceeccccc----chhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 355555666667777776654 467788888888888888888 67766555557777776666655 477777
Q ss_pred Chh-hhccccccceeccc-------------ccccc-------CCcccch-hcCCCCCCCeEEEeccCCc---ccch---
Q 048216 471 ADE-FWKVSKLRYLNFGA-------------ITLPA-------HPGKYCN-SLENLNFISALHHCYCTED---ILGR--- 522 (654)
Q Consensus 471 P~~-i~~L~~L~~L~l~~-------------l~~l~-------~~~~l~~-~l~~l~~L~~L~l~~~~~~---~~~~--- 522 (654)
|++ |++|..|+.|.+.. +.++. ..+.++. ++..+..++.+.+..+..- .+|.
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 764 56677777666532 00000 1112222 3344445555544433200 0000
Q ss_pred -------h-----------------------hhcccccCCCCCeEEEEeecC-CCCCCcchhhhcCCCCccEEEEEeecc
Q 048216 523 -------L-----------------------LVQILILSCLESLKLANESKM-PRRSNIILAEYQFPPSLTHLSFSNIEL 571 (654)
Q Consensus 523 -------~-----------------------~~l~~l~~~~~~L~L~l~~~~-~~lp~~~~~~~~lp~~L~~L~L~~~~l 571 (654)
+ .....+...+. .+.-.... ...|. ..+..+ ++|++|+|++|++
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s--~~~~~d~~d~~cP~--~cf~~L-~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS--RLSSEDFPDSICPA--KCFKKL-PNLRKLNLSNNKI 286 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH--hhccccCcCCcChH--HHHhhc-ccceEeccCCCcc
Confidence 0 00000000000 00000000 01121 245578 8999999999998
Q ss_pred CCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCccee-EcCccccccceeeeecC
Q 048216 572 MDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWT-MGIRAMPKLECLIINPC 642 (654)
Q Consensus 572 ~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~-~~~~~~p~L~~L~i~~C 642 (654)
+...-..+..+..|++|.|..|....- -..-..++..|+.|++.+ ++++.+. ..+..+.+|.+|.+-..
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHH-HHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccC
Confidence 777777888888999999885543110 001123567888899988 5666542 23344556677776443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=6.1e-10 Score=116.09 Aligned_cols=42 Identities=24% Similarity=0.074 Sum_probs=19.1
Q ss_pred hhhcccceeeEEecCCCCCCCCCC-cCChhHHhcCCC---ceEEcCCCccc
Q 048216 421 KICKMFKFLRVLNLGSLLNIPSLK-SLPSSLLSSLLN---LYTLDMPFSYI 467 (654)
Q Consensus 421 ~~~~~l~~Lr~L~L~~~~~lp~i~-~lP~~if~~L~~---L~~L~L~~~~l 467 (654)
..+..+++|+.|++++| .+. ..+..+ ..+.+ |++|++++|.+
T Consensus 75 ~~l~~~~~L~~L~l~~~----~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 75 QGLTKGCGLQELDLSDN----ALGPDGCGVL-ESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHhcCceeEEEccCC----CCChhHHHHH-HHHhccCcccEEEeeCCcc
Confidence 33444555555555555 333 222222 44433 55555555543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=2.2e-09 Score=111.91 Aligned_cols=231 Identities=15% Similarity=0.038 Sum_probs=109.8
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCc-------CChhHHhcCCCceEEcCCCcccc-c
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKS-------LPSSLLSSLLNLYTLDMPFSYID-H 469 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~-------lP~~if~~L~~L~~L~L~~~~l~-~ 469 (654)
.++++.|.+.++.........+...+...+.|+.|+++++ .+.. ++..+ .++.+|+.|++++|.+. .
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~----~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN----ETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc----ccCCcchHHHHHHHHH-HhcCceeEEEccCCCCChh
Confidence 4456666666655421011123444556666677777666 3332 23334 66667777777776544 3
Q ss_pred cChhhhcccc---ccceeccccccccCC----cccchhcCCC-CCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEE
Q 048216 470 TADEFWKVSK---LRYLNFGAITLPAHP----GKYCNSLENL-NFISALHHCYCTEDILGRLLVQILILSCLESL-KLAN 540 (654)
Q Consensus 470 lP~~i~~L~~---L~~L~l~~l~~l~~~----~~l~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l 540 (654)
.+..+..+.+ |++|+++. ++.. ..+...+..+ ++|++|++++|.............+...+ +| .|++
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~---~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-~L~~L~l 172 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNN---NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR-DLKELNL 172 (319)
T ss_pred HHHHHHHHhccCcccEEEeeC---CccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC-CcCEEEC
Confidence 4444544444 77776432 2211 1223344555 66777777766543110000122333344 66 6666
Q ss_pred eec-CC-----CCCCcchhhhcCCCCccEEEEEeeccCCCCc----cccccCcccceEEEeecccCCCeeEEcCC----C
Q 048216 541 ESK-MP-----RRSNIILAEYQFPPSLTHLSFSNIELMDDPM----PALEKLPVLQVLKLKQNSYSGRKLACSSD----G 606 (654)
Q Consensus 541 ~~~-~~-----~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l----~~l~~l~~L~~L~L~~~~~~~~~l~~~~~----~ 606 (654)
+++ +. .++. .+..+ ++|+.|++++|.+..... ..+..+++|++|++++|......+..-.. .
T Consensus 173 ~~n~l~~~~~~~l~~---~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~ 248 (319)
T cd00116 173 ANNGIGDAGIRALAE---GLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248 (319)
T ss_pred cCCCCchHHHHHHHH---HHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence 553 22 1111 22334 567777777666543222 12345666777777654432211100000 2
Q ss_pred CccccEEEEecCCCCc-----ceeEcCccccccceeeeecC
Q 048216 607 FPKLKVLHLKSMLWLE-----EWTMGIRAMPKLECLIINPC 642 (654)
Q Consensus 607 f~~L~~L~l~~~~~l~-----~l~~~~~~~p~L~~L~i~~C 642 (654)
.+.|+.|++.+| .++ .+......+++|+.+++++|
T Consensus 249 ~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 249 NISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 356677777664 232 11111223456666666664
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=6e-09 Score=106.22 Aligned_cols=197 Identities=22% Similarity=0.248 Sum_probs=114.9
Q ss_pred cccceeeEEecCCCCCCCCCCcCC--hhHHhcCCCceEEcCCCcccc---ccChhhhccccccceeccccccccCCcccc
Q 048216 424 KMFKFLRVLNLGSLLNIPSLKSLP--SSLLSSLLNLYTLDMPFSYID---HTADEFWKVSKLRYLNFGAITLPAHPGKYC 498 (654)
Q Consensus 424 ~~l~~Lr~L~L~~~~~lp~i~~lP--~~if~~L~~L~~L~L~~~~l~---~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~ 498 (654)
++++.||...|.++ .+...+ +-+ ..|++++.|||++|-+. .+-.-...|++|+.|+++. ..+. ...
T Consensus 118 sn~kkL~~IsLdn~----~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~---~~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNY----RVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLS---NFI 188 (505)
T ss_pred hhHHhhhheeecCc----cccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-cccc---CCc
Confidence 45556666666666 444444 234 56666666666666322 2333345566666666543 1110 000
Q ss_pred h--hcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeecCC----CCCCcchhhhcCCCCccEEEEEeecc
Q 048216 499 N--SLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESKMP----RRSNIILAEYQFPPSLTHLSFSNIEL 571 (654)
Q Consensus 499 ~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~~----~lp~~~~~~~~lp~~L~~L~L~~~~l 571 (654)
+ .-..+++|+.|.++.|..+.-. +..-+..+| +| .|++.++-. ..+. .-+ +.|+.|+|++|++
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~---V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~-----~i~-~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKD---VQWILLTFP-SLEVLYLEANEIILIKATST-----KIL-QTLQELDLSNNNL 258 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHH---HHHHHHhCC-cHHHhhhhcccccceecchh-----hhh-hHHhhccccCCcc
Confidence 0 0114577888888888665332 334455566 88 888876521 2222 234 8899999999886
Q ss_pred CCCC-ccccccCcccceEEEeecccCCCeeEE-----cCCCCccccEEEEecCCCCcceeEc--Cccccccceeeee
Q 048216 572 MDDP-MPALEKLPVLQVLKLKQNSYSGRKLAC-----SSDGFPKLKVLHLKSMLWLEEWTMG--IRAMPKLECLIIN 640 (654)
Q Consensus 572 ~~~~-l~~l~~l~~L~~L~L~~~~~~~~~l~~-----~~~~f~~L~~L~l~~~~~l~~l~~~--~~~~p~L~~L~i~ 640 (654)
...+ .+..+.||.|..|.++.+....-.++. ....||+|++|.+.. ++..+|+.- ...+++|+.|.+.
T Consensus 259 i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 259 IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcc
Confidence 4433 455788999999999854432211111 134699999999987 567777653 2346777777654
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.64 E-value=1.4e-07 Score=101.46 Aligned_cols=118 Identities=13% Similarity=0.082 Sum_probs=82.1
Q ss_pred CCCCceechhhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 048216 99 KDRDTVGLDNRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDII 176 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 176 (654)
.++.++||++++++|...|... +.....+-|+|.+|+||||+++.++++.......-..++|......+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 3467999999999999998543 23445678999999999999999998432222112345555566667888999999
Q ss_pred HHhCCCCCcccccccChHHHHHHHHHHHc--CCceEEEeccccC
Q 048216 177 KLVMPSRRLSEIMKESSEMKKIILHEYVM--TKRYLIVLDNFEN 218 (654)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LiVLDDvw~ 218 (654)
.++.....+....+.+. ....+.+.+. ++..+||||+++.
T Consensus 108 ~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~viviDE~d~ 149 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDE--LFDKIAEYLDERDRVLIVALDDINY 149 (394)
T ss_pred HHhcCCCCCCCCCCHHH--HHHHHHHHHHhcCCEEEEEECCHhH
Confidence 99976322112223334 6667777775 4568999999954
No 27
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.59 E-value=1.1e-07 Score=94.13 Aligned_cols=90 Identities=9% Similarity=-0.060 Sum_probs=62.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC--CCHHHHHHHHH-----HHhCCCCCcccccc-cChH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP--YDADQLLYDII-----KLVMPSRRLSEIMK-ESSE 194 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~-----~~l~~~~~~~~~~~-~~~~ 194 (654)
.-..++|+|.+|+|||||++.+|++.... +|+.++|+++++. +++.++++.+. .++..+.. .... ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~--~~~~~~~~- 90 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE--RHVQVAEM- 90 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH--HHHHHHHH-
Confidence 34689999999999999999999965444 8999999998777 89999999993 33332111 1000 011
Q ss_pred HHHHHHHHH-HcCCceEEEecccc
Q 048216 195 MKKIILHEY-VMTKRYLIVLDNFE 217 (654)
Q Consensus 195 ~~~~~l~~~-L~~kr~LiVLDDvw 217 (654)
........ -.++++++++|++-
T Consensus 91 -~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 91 -VLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred -HHHHHHHHHHCCCCEEEEEECHH
Confidence 12222222 35899999999993
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.58 E-value=2.7e-07 Score=98.18 Aligned_cols=114 Identities=19% Similarity=0.147 Sum_probs=78.9
Q ss_pred CCceechhhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcc------eeEEEEeCCCCCHHHHH
Q 048216 101 RDTVGLDNRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFD------CRAWVQESLPYDADQLL 172 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~------~~~wv~vs~~~~~~~~~ 172 (654)
+.++||++++++|...|... +.....+-|+|++|+|||++|++++++ .....+ ..+|+......+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 47999999999999998752 234567899999999999999999984 221111 34566666666778899
Q ss_pred HHHHHHhCC--CCCcccccccChHHHHHHHHHHHc--CCceEEEeccccC
Q 048216 173 YDIIKLVMP--SRRLSEIMKESSEMKKIILHEYVM--TKRYLIVLDNFEN 218 (654)
Q Consensus 173 ~~i~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LiVLDDvw~ 218 (654)
..|+.++.. ...+....+..+ ....+.+.+. +++++||||+++.
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSE--VFRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHH--HHHHHHHHHHhcCCeEEEEECchhh
Confidence 999999942 111011122233 4555666663 5678999999954
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.52 E-value=2.2e-06 Score=102.60 Aligned_cols=231 Identities=16% Similarity=0.119 Sum_probs=136.2
Q ss_pred CceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhC
Q 048216 102 DTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESL-PYDADQLLYDIIKLVM 180 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~ 180 (654)
.+|-|+. |.+.|... ...+++.|.|++|.||||++....+. ++.++|+++.. .-++..+...++..+.
T Consensus 15 ~~~~R~r----l~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 15 NTVVRER----LLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccCcchH----HHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 4555664 44444332 36789999999999999999988752 33689999864 4566777777777774
Q ss_pred CCCCc----cc----ccccCh-HHHHHHHHHHHc--CCceEEEeccccC-----------------cccccc--cccCCC
Q 048216 181 PSRRL----SE----IMKESS-EMKKIILHEYVM--TKRYLIVLDNFEN-----------------GENIGL--DFVPTR 230 (654)
Q Consensus 181 ~~~~~----~~----~~~~~~-~~~~~~l~~~L~--~kr~LiVLDDvw~-----------------G~~v~~--~~~~~~ 230 (654)
..... .. ...... ..+...+-..+. +.+++|||||+-. ...+.. ...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 22110 00 001011 002223333332 6789999999933 000000 000000
Q ss_pred -----------C---------cee------------------------E-ecCCchHHHHHHH-hhccccc----cchhc
Q 048216 231 -----------G---------PLR------------------------V-TYKGWPFYILYHR-SISQKEN----IEEAL 260 (654)
Q Consensus 231 -----------~---------~~~------------------------v-~c~GlPLai~~~g-~L~~~~~----~~~~l 260 (654)
. .+. . .|+|.|+++..++ .+..... ..+.+
T Consensus 164 ~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~ 243 (903)
T PRK04841 164 PLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRL 243 (903)
T ss_pred CCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhh
Confidence 0 000 4 9999999999999 7754421 11222
Q ss_pred cC--C---Cch-hhhhhcCCchhHHHHHhhhccCCCCceeChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCccccc
Q 048216 261 DE--P---RGL-QVVAYCMLPFYLKLFCLYLSVFPVHFDICTKQLYQLWIAEGFIPDNNEAAAEKYLEQLINGGFVDAGK 334 (654)
Q Consensus 261 ~~--~---~~~-l~~sy~~L~~~~k~cfly~s~Fp~~~~i~~~~Li~~Wiaegfi~~~~e~~~~~~~~~L~~~sll~~~~ 334 (654)
.. + ... ..--++.||++.+..+...|+++ .++.+-+-... | .+.+...+++|.+.+++....
T Consensus 244 ~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~------~~~~~~~L~~l~~~~l~~~~~ 311 (903)
T PRK04841 244 AGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G------EENGQMRLEELERQGLFIQRM 311 (903)
T ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C------CCcHHHHHHHHHHCCCeeEee
Confidence 11 1 122 23347899999999999999987 34433222111 1 233577899999999975322
Q ss_pred CCCCCCcceEEeChhHHHHHHHhh
Q 048216 335 RSDISRINTCSIPGRCSPALLTVA 358 (654)
Q Consensus 335 ~~~~g~~~~~~mhdlv~dla~~i~ 358 (654)
. +....|+.|++++++.+...
T Consensus 312 ~---~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 312 D---DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred c---CCCCEEehhHHHHHHHHHHH
Confidence 1 11146889999999998765
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.51 E-value=2.1e-08 Score=101.05 Aligned_cols=204 Identities=15% Similarity=0.073 Sum_probs=133.8
Q ss_pred ccCceeEEEEecCCCCcccc-ccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHH
Q 048216 375 LRENVKRFTAHEKLNDFGFL-DDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLL 451 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if 451 (654)
.|.....+.+. .+....+| ..+ +++||-|.+..+... .+-+..|.+++.|..|-+.++. .|+.+|...|
T Consensus 65 LP~~tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~N~Is----~I~p~AF~GL~~l~~Lvlyg~N---kI~~l~k~~F 136 (498)
T KOG4237|consen 65 LPPETVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSKNNIS----FIAPDAFKGLASLLSLVLYGNN---KITDLPKGAF 136 (498)
T ss_pred CCCcceEEEec-cCCcccCChhhccchhhhceecccccchh----hcChHhhhhhHhhhHHHhhcCC---chhhhhhhHh
Confidence 56677788888 44444344 445 889999999888764 3667888999988776666633 8888888888
Q ss_pred hcCCCceEEcCCCccccccCh-hhhccccccceeccc-------------------------------------------
Q 048216 452 SSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGA------------------------------------------- 487 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~------------------------------------------- 487 (654)
++|..||.|.+.-|.+.-++. .+..|++|+.|.+..
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 888888888887776655443 455666666555532
Q ss_pred -------------------cc------------ccc---CCccc-----c-hhcCCCCCCCeEEEeccCCcccchhhhcc
Q 048216 488 -------------------IT------------LPA---HPGKY-----C-NSLENLNFISALHHCYCTEDILGRLLVQI 527 (654)
Q Consensus 488 -------------------l~------------~l~---~~~~l-----~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 527 (654)
+. .+. ..+.. | ..+.++++|+.|++++|....+ .-.
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i----~~~ 292 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI----EDG 292 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh----hhh
Confidence 00 000 01111 1 2367788888888888866555 223
Q ss_pred cccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecc
Q 048216 528 LILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNS 594 (654)
Q Consensus 528 ~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~ 594 (654)
.+.... .+ .|.+.++ +..+.. ..+..+ ++|+.|+|.+|+++...+..+..+.+|..|.|-.|.
T Consensus 293 aFe~~a-~l~eL~L~~N~l~~v~~--~~f~~l-s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 293 AFEGAA-ELQELYLTRNKLEFVSS--GMFQGL-SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhcchh-hhhhhhcCcchHHHHHH--Hhhhcc-ccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 444444 66 7777542 333322 023367 888999999998887777778888888888887653
No 31
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.48 E-value=1.9e-07 Score=96.41 Aligned_cols=91 Identities=14% Similarity=-0.017 Sum_probs=61.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC--CHHHHHHHHHHHhCCCCCcccccccCh---HHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY--DADQLLYDIIKLVMPSRRLSEIMKESS---EMKKI 198 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~~~ 198 (654)
-+-.+|+|.+|+||||||+.||++.... +|+.++||.+++.+ ++.++++.|...+-.... +...... ....-
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~--d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF--DEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC--CCCHHHHHHHHHHHH
Confidence 4678999999999999999999965444 89999999999998 888888888632221111 1100000 00111
Q ss_pred HHHHH--HcCCceEEEecccc
Q 048216 199 ILHEY--VMTKRYLIVLDNFE 217 (654)
Q Consensus 199 ~l~~~--L~~kr~LiVLDDvw 217 (654)
...++ -.|++++|++|++-
T Consensus 246 e~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChH
Confidence 11122 36899999999993
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4e-09 Score=102.29 Aligned_cols=183 Identities=20% Similarity=0.177 Sum_probs=104.5
Q ss_pred CceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCC-cCChhHHhcCCCceEEcCCCc-cccccChhhhc
Q 048216 399 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLK-SLPSSLLSSLLNLYTLDMPFS-YIDHTADEFWK 476 (654)
Q Consensus 399 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~-~lP~~if~~L~~L~~L~L~~~-~l~~lP~~i~~ 476 (654)
+.|+.+.+...... ...+...++.+..|+.|.|+|+ .+. .+-..| .+-.+|+.|||+.| .+++.
T Consensus 185 sRlq~lDLS~s~it---~stl~~iLs~C~kLk~lSlEg~----~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n------ 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVIT---VSTLHGILSQCSKLKNLSLEGL----RLDDPIVNTI-AKNSNLVRLNLSMCSGFTEN------ 250 (419)
T ss_pred hhhHHhhcchhhee---HHHHHHHHHHHHhhhhcccccc----ccCcHHHHHH-hccccceeeccccccccchh------
Confidence 34555555544332 2344555666666666666666 222 233344 55555666666555 33332
Q ss_pred cccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeecCCCCCCc-chhh
Q 048216 477 VSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESKMPRRSNI-ILAE 554 (654)
Q Consensus 477 L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~~~lp~~-~~~~ 554 (654)
++.--+.+++.|++|+++||....-. +--.+....++| .|+++|+...+-.+ +.-+
T Consensus 251 -------------------~~~ll~~scs~L~~LNlsWc~l~~~~---Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL 308 (419)
T KOG2120|consen 251 -------------------ALQLLLSSCSRLDELNLSWCFLFTEK---VTVAVAHISETLTQLNLSGYRRNLQKSHLSTL 308 (419)
T ss_pred -------------------HHHHHHHhhhhHhhcCchHhhccchh---hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH
Confidence 12223456678888888888542210 111122223388 88888875543321 0011
Q ss_pred -hcCCCCccEEEEEeec-cCCCCccccccCcccceEEEeeccc-CCCeeEEcCCCCccccEEEEecCC
Q 048216 555 -YQFPPSLTHLSFSNIE-LMDDPMPALEKLPVLQVLKLKQNSY-SGRKLACSSDGFPKLKVLHLKSML 619 (654)
Q Consensus 555 -~~lp~~L~~L~L~~~~-l~~~~l~~l~~l~~L~~L~L~~~~~-~~~~l~~~~~~f~~L~~L~l~~~~ 619 (654)
..- ++|..|+|++|. ++.+....+.+++.|++|.++ .|| ...+.....+..|+|.+|++.+|-
T Consensus 309 ~~rc-p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls-RCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 VRRC-PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS-RCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhC-CceeeeccccccccCchHHHHHHhcchheeeehh-hhcCCChHHeeeeccCcceEEEEecccc
Confidence 133 889999999886 444445567789999999998 455 334444455678899999888863
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.44 E-value=1.1e-08 Score=107.28 Aligned_cols=176 Identities=18% Similarity=0.132 Sum_probs=140.9
Q ss_pred cccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccc
Q 048216 392 GFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDH 469 (654)
Q Consensus 392 ~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~ 469 (654)
+++..+ +-.|.++.+..+... ..+..+.++..|.+|||+.| .+..+|..+ |.|+ |+.|-+++|+++.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~N----qlS~lp~~l-C~lp-Lkvli~sNNkl~~ 157 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSN----QLSHLPDGL-CDLP-LKVLIVSNNKLTS 157 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccc----hhhcCChhh-hcCc-ceeEEEecCcccc
Confidence 355555 777888888877765 46788899999999999999 899999999 8776 8999999999999
Q ss_pred cChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCC
Q 048216 470 TADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRR 547 (654)
Q Consensus 470 lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~l 547 (654)
+|..++-+.+|.+|+.+. + ....+|+.++++.+|+.|.+..|....+| +.+..+ .| +|+++. .+..+
T Consensus 158 lp~~ig~~~tl~~ld~s~---n-ei~slpsql~~l~slr~l~vrRn~l~~lp-----~El~~L--pLi~lDfScNkis~i 226 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSK---N-EIQSLPSQLGYLTSLRDLNVRRNHLEDLP-----EELCSL--PLIRLDFSCNKISYL 226 (722)
T ss_pred CCcccccchhHHHhhhhh---h-hhhhchHHhhhHHHHHHHHHhhhhhhhCC-----HHHhCC--ceeeeecccCceeec
Confidence 999999999999999643 2 56778999999999999999998776665 455545 47 999976 56789
Q ss_pred CCcchhhhcCCCCccEEEEEeeccCCCCccc--cccCcccceEEEeec
Q 048216 548 SNIILAEYQFPPSLTHLSFSNIELMDDPMPA--LEKLPVLQVLKLKQN 593 (654)
Q Consensus 548 p~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~--l~~l~~L~~L~L~~~ 593 (654)
|- .+..+ +.|++|.|.+|.+..-+... -|...-.++|+..-+
T Consensus 227 Pv---~fr~m-~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 227 PV---DFRKM-RHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ch---hhhhh-hhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 98 88999 99999999999974433222 345566777777633
No 34
>PTZ00202 tuzin; Provisional
Probab=98.41 E-value=9.6e-06 Score=84.32 Aligned_cols=108 Identities=13% Similarity=-0.007 Sum_probs=72.0
Q ss_pred CCCCCCCceechhhHHHHHHHHhcC-CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHH
Q 048216 96 SSFKDRDTVGLDNRIEELLDLLIEG-PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYD 174 (654)
Q Consensus 96 ~~~~~~~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 174 (654)
...+..+++||+++...+...|... ....+++.|.|++|+|||||++.+... .. ..+.+.... +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~----~~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG----MPAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC----ceEEEECCC--CHHHHHHH
Confidence 3355678999999999999999753 234569999999999999999999973 22 113332222 77999999
Q ss_pred HHHHhCCCCCcccccccChHHHHHHHHHHH-c-CCceEEEe
Q 048216 175 IIKLVMPSRRLSEIMKESSEMKKIILHEYV-M-TKRYLIVL 213 (654)
Q Consensus 175 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~-~kr~LiVL 213 (654)
|+.+|+.+.......-... +++.+.+.- . +++.+||+
T Consensus 329 LL~ALGV~p~~~k~dLLrq--IqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 329 VVKALGVPNVEACGDLLDF--ISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHcCCCCcccHHHHHHH--HHHHHHHHHHhCCCCEEEEE
Confidence 9999997433000111122 333333322 3 67777776
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=5.6e-08 Score=94.44 Aligned_cols=126 Identities=19% Similarity=0.176 Sum_probs=65.1
Q ss_pred hcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhccccc-
Q 048216 452 SSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILIL- 530 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~- 530 (654)
-..+.|++|||++|.++.+-+++.-++++|.|+++. +.-....++..+.+|+.|++++|....+ +++.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-----N~i~~v~nLa~L~~L~~LDLS~N~Ls~~------~Gwh~ 349 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-----NRIRTVQNLAELPQLQLLDLSGNLLAEC------VGWHL 349 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccc-----cceeeehhhhhcccceEeecccchhHhh------hhhHh
Confidence 334556666666666666666666666666666543 1111223355566666666666532221 1111
Q ss_pred CCCCCe-EEEEeecC-CCCCCcchhhhcCCCCccEEEEEeeccCC-CCccccccCcccceEEEeecc
Q 048216 531 SCLESL-KLANESKM-PRRSNIILAEYQFPPSLTHLSFSNIELMD-DPMPALEKLPVLQVLKLKQNS 594 (654)
Q Consensus 531 ~~~~~L-~L~l~~~~-~~lp~~~~~~~~lp~~L~~L~L~~~~l~~-~~l~~l~~l~~L~~L~L~~~~ 594 (654)
.+- ++ +|.+.++. ..+. .++.+ -+|..|++++|++.. +....+|+||.|++|.|.+|.
T Consensus 350 KLG-NIKtL~La~N~iE~LS----GL~KL-YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 KLG-NIKTLKLAQNKIETLS----GLRKL-YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhc-CEeeeehhhhhHhhhh----hhHhh-hhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 122 44 55554432 2232 34555 666666666666432 233446666666666666443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.36 E-value=1.4e-07 Score=87.80 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=18.2
Q ss_pred ccceeeEEecCCCCCCCCCCcCChhHHh-cCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhc-C
Q 048216 425 MFKFLRVLNLGSLLNIPSLKSLPSSLLS-SLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSL-E 502 (654)
Q Consensus 425 ~l~~Lr~L~L~~~~~lp~i~~lP~~if~-~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l-~ 502 (654)
+...+|.|+|++| .|..+. .+ + .|.+|+.|++++|.++.++ ++..|++|+.|++++ - ....+.+.+ .
T Consensus 17 n~~~~~~L~L~~n----~I~~Ie-~L-~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~---N-~I~~i~~~l~~ 85 (175)
T PF14580_consen 17 NPVKLRELNLRGN----QISTIE-NL-GATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN---N-RISSISEGLDK 85 (175)
T ss_dssp ------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--S---S----S-CHHHHH
T ss_pred ccccccccccccc----cccccc-ch-hhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC---C-CCCccccchHH
Confidence 3445666777777 565553 34 4 4666777777777666664 455566666666432 1 112222222 2
Q ss_pred CCCCCCeEEEecc
Q 048216 503 NLNFISALHHCYC 515 (654)
Q Consensus 503 ~l~~L~~L~l~~~ 515 (654)
.+++|++|++++|
T Consensus 86 ~lp~L~~L~L~~N 98 (175)
T PF14580_consen 86 NLPNLQELYLSNN 98 (175)
T ss_dssp H-TT--EEE-TTS
T ss_pred hCCcCCEEECcCC
Confidence 3556666666655
No 37
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=7.3e-07 Score=79.71 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=63.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCC-----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY-----FDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKK 197 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 197 (654)
+-+++.|+|.+|+|||++++.+.++ .... -...+|+.+....+...+...|+.++..... ...+... +.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~--l~ 76 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDE--LR 76 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHH--HH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHH--HH
Confidence 3478999999999999999999883 2221 3455699988877999999999999998765 2233344 66
Q ss_pred HHHHHHHcCCce-EEEeccc
Q 048216 198 IILHEYVMTKRY-LIVLDNF 216 (654)
Q Consensus 198 ~~l~~~L~~kr~-LiVLDDv 216 (654)
+.+.+.+...+. +||+||+
T Consensus 77 ~~~~~~l~~~~~~~lviDe~ 96 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEA 96 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETT
T ss_pred HHHHHHHHhcCCeEEEEeCh
Confidence 778887766554 9999998
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.31 E-value=2e-06 Score=89.82 Aligned_cols=136 Identities=17% Similarity=0.087 Sum_probs=75.8
Q ss_pred hcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCc-cccccChhhhccccccceeccccccccCCcccchhc
Q 048216 423 CKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFS-YIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSL 501 (654)
Q Consensus 423 ~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~-~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l 501 (654)
+..+++++.|++++| .+..+| .+ ..+|+.|.+++| .+..+|..+. .+|++|+++. +.....+|.
T Consensus 48 ~~~~~~l~~L~Is~c----~L~sLP-~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~---Cs~L~sLP~-- 112 (426)
T PRK15386 48 IEEARASGRLYIKDC----DIESLP-VL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCH---CPEISGLPE-- 112 (426)
T ss_pred HHHhcCCCEEEeCCC----CCcccC-CC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccC---ccccccccc--
Confidence 444677788888888 677777 22 346788888877 7777776553 4777777533 323334443
Q ss_pred CCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeecCCCCCCcchhh-hcCCCCccEEEEEeeccCCCCcccc
Q 048216 502 ENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESKMPRRSNIILAE-YQFPPSLTHLSFSNIELMDDPMPAL 579 (654)
Q Consensus 502 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~~~lp~~~~~~-~~lp~~L~~L~L~~~~l~~~~l~~l 579 (654)
+|+.|++..+.. ..+..+|++| .|.+.++-...+. .+ ..+|++|++|++++|... ..++.+
T Consensus 113 ----sLe~L~L~~n~~---------~~L~~LPssLk~L~I~~~n~~~~~---~lp~~LPsSLk~L~Is~c~~i-~LP~~L 175 (426)
T PRK15386 113 ----SVRSLEIKGSAT---------DSIKNVPNGLTSLSINSYNPENQA---RIDNLISPSLKTLSLTGCSNI-ILPEKL 175 (426)
T ss_pred ----ccceEEeCCCCC---------cccccCcchHhheecccccccccc---ccccccCCcccEEEecCCCcc-cCcccc
Confidence 355666654321 2233344467 7776442111111 11 136677888888777632 111112
Q ss_pred ccCcccceEEEee
Q 048216 580 EKLPVLQVLKLKQ 592 (654)
Q Consensus 580 ~~l~~L~~L~L~~ 592 (654)
. ++|+.|.++.
T Consensus 176 P--~SLk~L~ls~ 186 (426)
T PRK15386 176 P--ESLQSITLHI 186 (426)
T ss_pred c--ccCcEEEecc
Confidence 1 4677777763
No 39
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.28 E-value=1e-06 Score=83.84 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=32.1
Q ss_pred CceechhhHHHHHHHHhc-CCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 102 DTVGLDNRIEELLDLLIE-GPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+|||+++++++...|.. .+...+.+.|+|.+|+|||||.++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999942 2456799999999999999999999884
No 40
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.25 E-value=7.4e-06 Score=83.16 Aligned_cols=89 Identities=18% Similarity=0.139 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccCh--HHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESS--EMKKIILH 201 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~--~~~~~~l~ 201 (654)
..++.|+|.+|+||||||+.+++..... .+ ..+|+ +....+..+++..|...++.... . .+... ..+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~-~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--G-RDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--C-CCHHHHHHHHHHHHH
Confidence 4689999999999999999999853321 11 12333 33456788899999988876532 1 11111 00233333
Q ss_pred HH-HcCCceEEEeccccC
Q 048216 202 EY-VMTKRYLIVLDNFEN 218 (654)
Q Consensus 202 ~~-L~~kr~LiVLDDvw~ 218 (654)
.. ..+++++||+||+|.
T Consensus 117 ~~~~~~~~~vliiDe~~~ 134 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQN 134 (269)
T ss_pred HHHhCCCCeEEEEECccc
Confidence 32 267889999999976
No 41
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.24 E-value=2.5e-06 Score=88.64 Aligned_cols=93 Identities=12% Similarity=-0.030 Sum_probs=62.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC--CCHHHHHHHHHHHhCCCCCc---ccccccChHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP--YDADQLLYDIIKLVMPSRRL---SEIMKESSEMKK 197 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 197 (654)
.-..++|+|.+|.|||||++.+++.... ++|+..+||.+++. .++.++++.|+..+-..... ........ ...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~-~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAE-MVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHH-HHH
Confidence 3467999999999999999999995433 37999999999866 89999999995444322220 00000000 011
Q ss_pred HHHHH-HHcCCceEEEecccc
Q 048216 198 IILHE-YVMTKRYLIVLDNFE 217 (654)
Q Consensus 198 ~~l~~-~L~~kr~LiVLDDvw 217 (654)
+.... .-+|++++|++|++-
T Consensus 245 e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChh
Confidence 22222 236899999999993
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.24 E-value=8.4e-07 Score=95.49 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=37.9
Q ss_pred ceeeEEecCCCCCCCCCCcCChhHHhcCC-CceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCC
Q 048216 427 KFLRVLNLGSLLNIPSLKSLPSSLLSSLL-NLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLN 505 (654)
Q Consensus 427 ~~Lr~L~L~~~~~lp~i~~lP~~if~~L~-~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~ 505 (654)
+.+..|++.++ .+..+|..+ +.+. +|+.|+++++.+..+|..++.+++|+.|+++. . ....+|...+.++
T Consensus 116 ~~l~~L~l~~n----~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~---N-~l~~l~~~~~~~~ 186 (394)
T COG4886 116 TNLTSLDLDNN----NITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF---N-DLSDLPKLLSNLS 186 (394)
T ss_pred cceeEEecCCc----ccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCC---c-hhhhhhhhhhhhh
Confidence 44455555555 445555444 4442 55555555555555544445555555554322 1 2233333333444
Q ss_pred CCCeEEEeccCCc
Q 048216 506 FISALHHCYCTED 518 (654)
Q Consensus 506 ~L~~L~l~~~~~~ 518 (654)
+|+.|+++++...
T Consensus 187 ~L~~L~ls~N~i~ 199 (394)
T COG4886 187 NLNNLDLSGNKIS 199 (394)
T ss_pred hhhheeccCCccc
Confidence 4444444444333
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.22 E-value=9.7e-07 Score=95.02 Aligned_cols=171 Identities=22% Similarity=0.230 Sum_probs=125.1
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccc-eeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFK-FLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWK 476 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~ 476 (654)
.+.+..|.+..+... -++.....++ +|+.|++++| .+..+|..+ +.+++|+.|++++|.+.++|...+.
T Consensus 115 ~~~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N----~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 115 LTNLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDN----KIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred ccceeEEecCCcccc-----cCccccccchhhccccccccc----chhhhhhhh-hccccccccccCCchhhhhhhhhhh
Confidence 457888887777654 2344455564 8999999999 899998888 9999999999999999999988889
Q ss_pred cccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhh
Q 048216 477 VSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAE 554 (654)
Q Consensus 477 L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~ 554 (654)
+.+|+.|++++ . ....+|..+..+.+|++|.++.|..... +..+.... ++ .+.+.++ +..+|. .+
T Consensus 185 ~~~L~~L~ls~---N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~-----~~~~~~~~-~l~~l~l~~n~~~~~~~---~~ 251 (394)
T COG4886 185 LSNLNNLDLSG---N-KISDLPPEIELLSALEELDLSNNSIIEL-----LSSLSNLK-NLSGLELSNNKLEDLPE---SI 251 (394)
T ss_pred hhhhhheeccC---C-ccccCchhhhhhhhhhhhhhcCCcceec-----chhhhhcc-cccccccCCceeeeccc---hh
Confidence 99999999654 2 4456677666777799999988842221 22333344 55 5554443 223466 77
Q ss_pred hcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecc
Q 048216 555 YQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNS 594 (654)
Q Consensus 555 ~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~ 594 (654)
..+ +++++|++++|.++ .++.++.+.+|++|+++++.
T Consensus 252 ~~l-~~l~~L~~s~n~i~--~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 252 GNL-SNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccc-cccceecccccccc--ccccccccCccCEEeccCcc
Confidence 778 88999999999864 33448899999999998544
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5.4e-08 Score=94.61 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=104.5
Q ss_pred hhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCc-ccchhhhcccccCCCCCe-EEEEeecCCCCCCcc
Q 048216 474 FWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTED-ILGRLLVQILILSCLESL-KLANESKMPRRSNII 551 (654)
Q Consensus 474 i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~~~~~L-~L~l~~~~~~lp~~~ 551 (654)
+....+|+.|. |.+++-...+...|.+-.+|+.|+++.|+.- ... .---+.++. .| .|+++.+.-.-|...
T Consensus 206 Ls~C~kLk~lS---lEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~---~~ll~~scs-~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 206 LSQCSKLKNLS---LEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA---LQLLLSSCS-RLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHhhhhcc---ccccccCcHHHHHHhccccceeeccccccccchhH---HHHHHHhhh-hHhhcCchHhhccchhhh
Confidence 34455555555 3344444556677777888899999888542 211 111234555 88 888887543212100
Q ss_pred hhhhcCCCCccEEEEEeec--cCCCCcccc-ccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCc-ceeEc
Q 048216 552 LAEYQFPPSLTHLSFSNIE--LMDDPMPAL-EKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLE-EWTMG 627 (654)
Q Consensus 552 ~~~~~lp~~L~~L~L~~~~--l~~~~l~~l-~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~-~l~~~ 627 (654)
..+.+..++|+.|+|++|. +....+..+ .+.|+|.+|+|+++.............|+.|++|.++.|..+. +--..
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~ 358 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE 358 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeee
Confidence 0334555899999999985 333344444 4689999999996544333333334569999999999998664 22345
Q ss_pred CccccccceeeeecCc
Q 048216 628 IRAMPKLECLIINPCA 643 (654)
Q Consensus 628 ~~~~p~L~~L~i~~C~ 643 (654)
.+.+|+|.+|++.+|-
T Consensus 359 l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccCcceEEEEecccc
Confidence 6789999999999883
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.16 E-value=2.2e-05 Score=82.03 Aligned_cols=218 Identities=14% Similarity=0.060 Sum_probs=120.5
Q ss_pred CCCceechhhHHHHHHHHhc---CCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 048216 100 DRDTVGLDNRIEELLDLLIE---GPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDII 176 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 176 (654)
-.+++|+++.++.+..++.. .+.....+-|+|++|+||||||+.+.+. ....|. ++. ........-+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~~---~~~-~~~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNIR---ITS-GPALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCeE---EEe-cccccChHHHHHHH
Confidence 45799999999999888864 2334667889999999999999999993 332221 111 11122223344555
Q ss_pred HHhCCCCC----cccccccChHHHHHHHHHHHcCCceEEEeccccCc-----------------------ccccccccCC
Q 048216 177 KLVMPSRR----LSEIMKESSEMKKIILHEYVMTKRYLIVLDNFENG-----------------------ENIGLDFVPT 229 (654)
Q Consensus 177 ~~l~~~~~----~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~G-----------------------~~v~~~~~~~ 229 (654)
..+....- +++..+ .. ..+.+...+.+.+..+|+|+..+- ..+...++..
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~--~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~ 174 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PV--VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIV 174 (328)
T ss_pred HhcccCCEEEEecHhhcc-hH--HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCee
Confidence 55543221 011111 12 345567777888888888875431 0010011000
Q ss_pred C--Ccee---------------------------E-ecCCchHHHHHHH-hhccc------cccchhccCC-Cchhhhhh
Q 048216 230 R--GPLR---------------------------V-TYKGWPFYILYHR-SISQK------ENIEEALDEP-RGLQVVAY 271 (654)
Q Consensus 230 ~--~~~~---------------------------v-~c~GlPLai~~~g-~L~~~------~~~~~~l~~~-~~~l~~sy 271 (654)
. ..+. + .|+|.|-.+..+. .+... .....++... ...+...|
T Consensus 175 ~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~~~ 254 (328)
T PRK00080 175 QRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGVDE 254 (328)
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCc
Confidence 0 0000 6 8999986544444 32211 1111111111 44466778
Q ss_pred cCCchhHHHHHh-hhccCCCCceeChHHHHHHHHHcCCCCCCHHHHHHHHHH-HHHhCCCccccc
Q 048216 272 CMLPFYLKLFCL-YLSVFPVHFDICTKQLYQLWIAEGFIPDNNEAAAEKYLE-QLINGGFVDAGK 334 (654)
Q Consensus 272 ~~L~~~~k~cfl-y~s~Fp~~~~i~~~~Li~~Wiaegfi~~~~e~~~~~~~~-~L~~~sll~~~~ 334 (654)
..|++..+.-+. ....|+.+ .+..+.+.... ....+.++..++ .|++.+|++...
T Consensus 255 ~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-------g~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 255 LGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-------GEERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred CCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-------CCCcchHHHHhhHHHHHcCCcccCC
Confidence 889888777664 66677765 45555553332 122344555566 899999997443
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=8e-07 Score=67.82 Aligned_cols=56 Identities=30% Similarity=0.469 Sum_probs=42.0
Q ss_pred ceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccCh-hhhccccccceecc
Q 048216 427 KFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFG 486 (654)
Q Consensus 427 ~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~ 486 (654)
++|++|++++| .+..+|...|.++++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 1 p~L~~L~l~~n----~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 1 PNLESLDLSNN----KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TTESEEEETSS----TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred CcCcEEECCCC----CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence 45778888888 7888887666888888888888887777754 56777777777753
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.14 E-value=1.6e-05 Score=82.33 Aligned_cols=216 Identities=13% Similarity=0.057 Sum_probs=118.5
Q ss_pred CCceechhhHHHHHHHHhcC---CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 048216 101 RDTVGLDNRIEELLDLLIEG---PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIK 177 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 177 (654)
.++||+++.++.|..++... ......+-++|++|+|||+||+.+.+. ....|. .+..+..... ..+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~---~~~~~~~~~~-~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNLK---ITSGPALEKP-GDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCEE---EeccchhcCc-hhHHHHHH
Confidence 46999999999999988642 234566889999999999999999983 332221 1211111112 22333344
Q ss_pred HhCCCCC----cccccccChHHHHHHHHHHHcCCceEEEeccccCcc-----------------------cccccccCC-
Q 048216 178 LVMPSRR----LSEIMKESSEMKKIILHEYVMTKRYLIVLDNFENGE-----------------------NIGLDFVPT- 229 (654)
Q Consensus 178 ~l~~~~~----~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~G~-----------------------~v~~~~~~~- 229 (654)
.+....- +++... .. .++.+...+.+.+..+|+|+.++.+ .+...++..
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~--~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~ 154 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PA--VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIIL 154 (305)
T ss_pred hcccCCEEEEehHhhhC-HH--HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEE
Confidence 4433221 011111 12 4556777888888889998864410 000111000
Q ss_pred -CCcee---------------------------E-ecCCchHHHHHHH-hhccc------cccchhccCC-Cchhhhhhc
Q 048216 230 -RGPLR---------------------------V-TYKGWPFYILYHR-SISQK------ENIEEALDEP-RGLQVVAYC 272 (654)
Q Consensus 230 -~~~~~---------------------------v-~c~GlPLai~~~g-~L~~~------~~~~~~l~~~-~~~l~~sy~ 272 (654)
-..+. + .|+|.|-.+.-+. .+... .....++... ...+..+|.
T Consensus 155 ~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~~~ 234 (305)
T TIGR00635 155 RLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMIDEL 234 (305)
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCCC
Confidence 00000 5 8889886654444 33111 1111111111 233667788
Q ss_pred CCchhHHHHHh-hhccCCCCceeChHHHHHHHHHcCCCCCCHHHHHHHHHH-HHHhCCCcccc
Q 048216 273 MLPFYLKLFCL-YLSVFPVHFDICTKQLYQLWIAEGFIPDNNEAAAEKYLE-QLINGGFVDAG 333 (654)
Q Consensus 273 ~L~~~~k~cfl-y~s~Fp~~~~i~~~~Li~~Wiaegfi~~~~e~~~~~~~~-~L~~~sll~~~ 333 (654)
.++++.+.-+. ..+.++.+ .+..+++.... ......++..++ .|++++|++..
T Consensus 235 ~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-------g~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 235 GLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-------GEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred CCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-------CCCcchHHHhhhHHHHHcCCcccC
Confidence 89998777555 55666543 34444443332 223445667777 69999999743
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=5.6e-07 Score=92.10 Aligned_cols=199 Identities=16% Similarity=0.027 Sum_probs=122.0
Q ss_pred ccCceeEEEEecCCCCccccc--cc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChh-
Q 048216 375 LRENVKRFTAHEKLNDFGFLD--DF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSS- 449 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~~--~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~- 449 (654)
..++.|.+++. +........ .. ++++|.|.++.+-... -.....+...+++|+.|+|+.|.+ ...-++
T Consensus 119 n~kkL~~IsLd-n~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls~Nrl----~~~~~s~ 191 (505)
T KOG3207|consen 119 NLKKLREISLD-NYRVEDAGIEEYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLSSNRL----SNFISSN 191 (505)
T ss_pred hHHhhhheeec-CccccccchhhhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhcccccccc----cCCcccc
Confidence 34567888887 665553332 22 9999999998876541 123456778999999999999843 222111
Q ss_pred -HHhcCCCceEEcCCCccccc--cChhhhccccccceeccccccccCCcccc--hhcCCCCCCCeEEEeccCCcccchhh
Q 048216 450 -LLSSLLNLYTLDMPFSYIDH--TADEFWKVSKLRYLNFGAITLPAHPGKYC--NSLENLNFISALHHCYCTEDILGRLL 524 (654)
Q Consensus 450 -if~~L~~L~~L~L~~~~l~~--lP~~i~~L~~L~~L~l~~l~~l~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~ 524 (654)
. ..+.+|..|.|++|.+.. +-...-..++|..|+|.+ +...+. .+...++.|++|+|++|..-..+
T Consensus 192 ~~-~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~-----N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~--- 262 (505)
T KOG3207|consen 192 TT-LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA-----NEIILIKATSTKILQTLQELDLSNNNLIDFD--- 262 (505)
T ss_pred ch-hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc-----ccccceecchhhhhhHHhhccccCCcccccc---
Confidence 2 457889999999996652 333344667888888754 211221 22344678889999988665443
Q ss_pred hcccccCCCCCe-EEEEeec-CC--CCCCc-ch-hhhcCCCCccEEEEEeeccC-CCCccccccCcccceEEEe
Q 048216 525 VQILILSCLESL-KLANESK-MP--RRSNI-IL-AEYQFPPSLTHLSFSNIELM-DDPMPALEKLPVLQVLKLK 591 (654)
Q Consensus 525 ~l~~l~~~~~~L-~L~l~~~-~~--~lp~~-~~-~~~~lp~~L~~L~L~~~~l~-~~~l~~l~~l~~L~~L~L~ 591 (654)
.......+| .| .|.++.+ +. .+|+. .. -...+ ++|++|.+..|++. ...+..+..+++|+.|.+.
T Consensus 263 ~~~~~~~l~-~L~~Lnls~tgi~si~~~d~~s~~kt~~f-~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 263 QGYKVGTLP-GLNQLNLSSTGIASIAEPDVESLDKTHTF-PKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccccccc-chhhhhccccCcchhcCCCccchhhhccc-ccceeeecccCccccccccchhhccchhhhhhcc
Confidence 333444455 66 6666542 11 34430 00 02356 88888888888752 2344455667777887776
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=2.4e-06 Score=79.70 Aligned_cols=106 Identities=19% Similarity=0.135 Sum_probs=38.9
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhc-ccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhh-
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICK-MFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFW- 475 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~- 475 (654)
+.++|.|.+.++.... .. .+. .+.+|++|+|++| .|..++ .+ ..|++|++|++++|.+..++..+.
T Consensus 18 ~~~~~~L~L~~n~I~~-----Ie-~L~~~l~~L~~L~Ls~N----~I~~l~-~l-~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-----IE-NLGATLDKLEVLDLSNN----QITKLE-GL-PGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS------S--T-T-----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccc-----cc-chhhhhcCCCEEECCCC----CCcccc-Cc-cChhhhhhcccCCCCCCccccchHH
Confidence 4567888888777641 22 233 5788999999999 899886 46 889999999999999999977664
Q ss_pred ccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCC
Q 048216 476 KVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTE 517 (654)
Q Consensus 476 ~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~ 517 (654)
.+++|++|++++ .++..... -..+..+++|+.|++.+|+.
T Consensus 86 ~lp~L~~L~L~~-N~I~~l~~-l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 86 NLPNLQELYLSN-NKISDLNE-LEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp H-TT--EEE-TT-S---SCCC-CGGGGG-TT--EEE-TT-GG
T ss_pred hCCcCCEEECcC-CcCCChHH-hHHHHcCCCcceeeccCCcc
Confidence 689999999765 11112222 24556778888888888744
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.08 E-value=1.7e-07 Score=98.67 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=124.4
Q ss_pred hhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCccc
Q 048216 418 YCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKY 497 (654)
Q Consensus 418 ~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l 497 (654)
.++..+..|-.|..|.|+.| .+..+|..| ++|..|.+|||+.|.+..+|..++.|+ |+.|.+++ - ....+
T Consensus 89 elp~~~~~f~~Le~liLy~n----~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN---N-kl~~l 158 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHN----CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN---N-KLTSL 158 (722)
T ss_pred cCchHHHHHHHHHHHHHHhc----cceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec---C-ccccC
Confidence 34566777888888999999 899999999 999999999999999999999998874 78887543 2 56788
Q ss_pred chhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCC
Q 048216 498 CNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDP 575 (654)
Q Consensus 498 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~ 575 (654)
|..++.+..|..|+.+.|+...+| ..+..+. +| .|.+.. .+..+|. .+..| .|.+|++++|++.. .
T Consensus 159 p~~ig~~~tl~~ld~s~nei~slp-----sql~~l~-slr~l~vrRn~l~~lp~---El~~L--pLi~lDfScNkis~-i 226 (722)
T KOG0532|consen 159 PEEIGLLPTLAHLDVSKNEIQSLP-----SQLGYLT-SLRDLNVRRNHLEDLPE---ELCSL--PLIRLDFSCNKISY-L 226 (722)
T ss_pred CcccccchhHHHhhhhhhhhhhch-----HHhhhHH-HHHHHHHhhhhhhhCCH---HHhCC--ceeeeecccCceee-c
Confidence 999998899999999999777665 3444455 66 677754 5668888 66666 68999999998743 3
Q ss_pred ccccccCcccceEEEeeccc
Q 048216 576 MPALEKLPVLQVLKLKQNSY 595 (654)
Q Consensus 576 l~~l~~l~~L~~L~L~~~~~ 595 (654)
+-.+.+|..|++|-|.+|..
T Consensus 227 Pv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred chhhhhhhhheeeeeccCCC
Confidence 33578999999999996554
No 51
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.07 E-value=1.9e-05 Score=71.50 Aligned_cols=58 Identities=21% Similarity=0.099 Sum_probs=42.1
Q ss_pred eechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC
Q 048216 104 VGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP 165 (654)
Q Consensus 104 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 165 (654)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+.+++. ....-...+++..++.
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhh
Confidence 47888889998888764 3467889999999999999999983 3222234455554443
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=2.4e-06 Score=65.11 Aligned_cols=61 Identities=25% Similarity=0.231 Sum_probs=53.4
Q ss_pred CceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccc
Q 048216 399 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYI 467 (654)
Q Consensus 399 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l 467 (654)
++|++|.+.++... .+.+..|.++++|++|++++| .+..+|...|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~----~i~~~~f~~l~~L~~L~l~~N----~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT----EIPPDSFSNLPNLETLDLSNN----NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES----EECTTTTTTGTTESEEEETSS----SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC----ccCHHHHcCCCCCCEeEccCC----ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57888999888654 466788999999999999999 89999988889999999999999864
No 53
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.00 E-value=4.9e-05 Score=80.54 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=74.6
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhC
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVM 180 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 180 (654)
.++++.+...+.+...|... +.|.++|++|+||||+|+++++.......|+.+.||++++.++..+++..+.-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP--- 247 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP--- 247 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC---
Confidence 46888999999999999764 46778999999999999999985444557888899999999987776543211
Q ss_pred CCCCccccc-ccChHHHHHHHHHHHc--CCceEEEeccccCc
Q 048216 181 PSRRLSEIM-KESSEMKKIILHEYVM--TKRYLIVLDNFENG 219 (654)
Q Consensus 181 ~~~~~~~~~-~~~~~~~~~~l~~~L~--~kr~LiVLDDvw~G 219 (654)
... ... .... ..+.+++.-. ++++++|+|++-.|
T Consensus 248 -~~v--gy~~~~G~--f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 248 -NGV--GFRRKDGI--FYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred -CCC--CeEecCch--HHHHHHHHHhcccCCcEEEEehhhcc
Confidence 100 110 1111 2333333332 47899999999664
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.98 E-value=1.2e-06 Score=85.26 Aligned_cols=129 Identities=17% Similarity=0.170 Sum_probs=65.8
Q ss_pred cccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCC
Q 048216 424 KMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLEN 503 (654)
Q Consensus 424 ~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~ 503 (654)
...+.|..||||+| .|+++.+|+ .-++.++.|++++|.+..+-. +..|.+|.+|++++ .. ...+..+=.+
T Consensus 281 dTWq~LtelDLS~N----~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~---Ls~~~Gwh~K 350 (490)
T KOG1259|consen 281 DTWQELTELDLSGN----LITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NL---LAECVGWHLK 350 (490)
T ss_pred chHhhhhhcccccc----chhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeeccc-ch---hHhhhhhHhh
Confidence 33445666666666 666666666 666666666666666655533 56666666666544 00 0111111123
Q ss_pred CCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeecc
Q 048216 504 LNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIEL 571 (654)
Q Consensus 504 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l 571 (654)
+.+.++|.+..|..+.+ .++..+- +| .|+++++ +..+-. +..++++ |+|++|.|.+|.+
T Consensus 351 LGNIKtL~La~N~iE~L------SGL~KLY-SLvnLDl~~N~Ie~lde-V~~IG~L-PCLE~l~L~~NPl 411 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETL------SGLRKLY-SLVNLDLSSNQIEELDE-VNHIGNL-PCLETLRLTGNPL 411 (490)
T ss_pred hcCEeeeehhhhhHhhh------hhhHhhh-hheeccccccchhhHHH-hcccccc-cHHHHHhhcCCCc
Confidence 44555555655533322 2333333 44 5555442 222111 2255666 7777777777664
No 55
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.94 E-value=1.4e-05 Score=78.85 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=41.3
Q ss_pred ceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC
Q 048216 103 TVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP 165 (654)
Q Consensus 103 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 165 (654)
|+||++++++|.+++..+ ..+.+.|+|..|+|||+|++.+.+ ..+..-...+|+...+.
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~ 59 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEE 59 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTB
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccc
Confidence 689999999999999875 357899999999999999999998 44222123444444343
No 56
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.7e-05 Score=79.30 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=83.1
Q ss_pred CceechhhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcce--eEEEEeCCCCCHHHHHHHHHH
Q 048216 102 DTVGLDNRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDC--RAWVQESLPYDADQLLYDIIK 177 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~i~~ 177 (654)
.+.+|+++++++...|..- +....-+-|+|..|.|||+.++.|.+ ++...... .+.|.+-.......++..|+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 3899999999999998652 22333488999999999999999998 55444322 577777777889999999999
Q ss_pred HhCCCCCcccccccChHHHHHHHHHHHc--CCceEEEeccccC
Q 048216 178 LVMPSRRLSEIMKESSEMKKIILHEYVM--TKRYLIVLDNFEN 218 (654)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LiVLDDvw~ 218 (654)
+++.... ..+...+ .-..+.+.+. ++.++||||++-.
T Consensus 96 ~~~~~p~--~g~~~~~--~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 96 KLGKVPL--TGDSSLE--ILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred HcCCCCC--CCCchHH--HHHHHHHHHHhcCCeEEEEEcchhh
Confidence 9974333 3333344 6667777774 5899999999944
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=3.1e-06 Score=82.56 Aligned_cols=190 Identities=17% Similarity=0.148 Sum_probs=92.0
Q ss_pred cccceeeEEecCCCCCCCCCCcCCh--hHHhcCCCceEEcCCCcccc----ccChhhhccccccceeccccccccCCccc
Q 048216 424 KMFKFLRVLNLGSLLNIPSLKSLPS--SLLSSLLNLYTLDMPFSYID----HTADEFWKVSKLRYLNFGAITLPAHPGKY 497 (654)
Q Consensus 424 ~~l~~Lr~L~L~~~~~lp~i~~lP~--~if~~L~~L~~L~L~~~~l~----~lP~~i~~L~~L~~L~l~~l~~l~~~~~l 497 (654)
...+.++.|||.+| .|....+ +|..+|+.|++|+|+.|.+. .+| --+++|+.|.|.+ +.| .....
T Consensus 68 ~~~~~v~elDL~~N----~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg-T~L-~w~~~ 138 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN----LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG-TGL-SWTQS 138 (418)
T ss_pred HHhhhhhhhhcccc----hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcC-CCC-Chhhh
Confidence 44555566666666 4432211 22245566666666655332 233 2344555555433 222 22233
Q ss_pred chhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeecCCCCCCcchhh-hcCCCCccEEEEEeeccCCCC
Q 048216 498 CNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESKMPRRSNIILAE-YQFPPSLTHLSFSNIELMDDP 575 (654)
Q Consensus 498 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~~~lp~~~~~~-~~lp~~L~~L~L~~~~l~~~~ 575 (654)
-..+..++.+++|+++.|+..-+.. .-+...+..+.+ +|+..+|....-.++--+ .-| +|+..+.+..|.+....
T Consensus 139 ~s~l~~lP~vtelHmS~N~~rq~n~--Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F-pnv~sv~v~e~PlK~~s 215 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLRQLNL--DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF-PNVNSVFVCEGPLKTES 215 (418)
T ss_pred hhhhhcchhhhhhhhccchhhhhcc--ccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc-ccchheeeecCcccchh
Confidence 3455566666666666653211100 000111111144 555554432110000001 135 88888888888764322
Q ss_pred -ccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCccee
Q 048216 576 -MPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWT 625 (654)
Q Consensus 576 -l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~ 625 (654)
-.....+|.+-.|.|..++...-.-.....+||+|..|++.+.|-+..+.
T Consensus 216 ~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 216 SEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 22345677777888874433221112234579999999888876665543
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.87 E-value=1.7e-06 Score=86.28 Aligned_cols=239 Identities=18% Similarity=0.107 Sum_probs=133.5
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCC-CCCCCcCChhH------HhcCCCceEEcCCCcccc-c
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLN-IPSLKSLPSSL------LSSLLNLYTLDMPFSYID-H 469 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~-lp~i~~lP~~i------f~~L~~L~~L~L~~~~l~-~ 469 (654)
...+..+.++++.....-.......+.+.+.||.-+++.-.. . ...++|+.+ .-..++|++|||+.|-+. .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR-~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGR-LKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCC-cHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 556666666666653211234556667777777777775521 0 111333322 033457777777777322 1
Q ss_pred cCh----hhhccccccceeccccccccCC----cc---------cchhcCCCCCCCeEEEeccCCcccchhhhcccccCC
Q 048216 470 TAD----EFWKVSKLRYLNFGAITLPAHP----GK---------YCNSLENLNFISALHHCYCTEDILGRLLVQILILSC 532 (654)
Q Consensus 470 lP~----~i~~L~~L~~L~l~~l~~l~~~----~~---------l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~ 532 (654)
-|+ -+.+...|+||+|. ||... .. ...-+++-+.|+.+....|.....+....-..++.+
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~---N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLN---NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred chHHHHHHHHhccCHHHHhhh---cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 222 24566777777743 33200 00 123345567888888888755444322233455666
Q ss_pred CCCe-EEEEeecCCCCCCc---chhhhcCCCCccEEEEEeeccCCCCc----cccccCcccceEEEeecccCCCee-E--
Q 048216 533 LESL-KLANESKMPRRSNI---ILAEYQFPPSLTHLSFSNIELMDDPM----PALEKLPVLQVLKLKQNSYSGRKL-A-- 601 (654)
Q Consensus 533 ~~~L-~L~l~~~~~~lp~~---~~~~~~lp~~L~~L~L~~~~l~~~~l----~~l~~l~~L~~L~L~~~~~~~~~l-~-- 601 (654)
+ .| .+.+..+.-.-+.. ...+... ++|+.|+|.+|.++...- ..+..+|+|+.|++.+|......- .
T Consensus 185 ~-~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 185 P-TLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred c-ccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 6 88 88886532221210 0023355 999999999998755432 235667889999998554322110 0
Q ss_pred -EcCCCCccccEEEEecCCCCcc-----eeEcCccccccceeeeecCc
Q 048216 602 -CSSDGFPKLKVLHLKSMLWLEE-----WTMGIRAMPKLECLIINPCA 643 (654)
Q Consensus 602 -~~~~~f~~L~~L~l~~~~~l~~-----l~~~~~~~p~L~~L~i~~C~ 643 (654)
.-..++|+|+.|.+.++. .+. +-......|.|+.|.+++|.
T Consensus 263 ~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 012348999999988843 221 11123348999999999983
No 59
>PLN03150 hypothetical protein; Provisional
Probab=97.86 E-value=2.7e-05 Score=88.31 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=52.9
Q ss_pred eeeEEecCCCCCCCCCC-cCChhHHhcCCCceEEcCCCcccc-ccChhhhccccccceeccccccccCCcccchhcCCCC
Q 048216 428 FLRVLNLGSLLNIPSLK-SLPSSLLSSLLNLYTLDMPFSYID-HTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLN 505 (654)
Q Consensus 428 ~Lr~L~L~~~~~lp~i~-~lP~~if~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~ 505 (654)
.++.|+|++| .+. .+|.++ ++|.+|+.|+|++|.+. .+|..+++|++|+.|+++ +......+|..+++++
T Consensus 419 ~v~~L~L~~n----~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs---~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQ----GLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS---YNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCC----CccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC---CCCCCCCCchHHhcCC
Confidence 3666777776 343 666666 77777777777777554 567677777777777743 3333345666777777
Q ss_pred CCCeEEEeccCC
Q 048216 506 FISALHHCYCTE 517 (654)
Q Consensus 506 ~L~~L~l~~~~~ 517 (654)
+|+.|++++|..
T Consensus 491 ~L~~L~Ls~N~l 502 (623)
T PLN03150 491 SLRILNLNGNSL 502 (623)
T ss_pred CCCEEECcCCcc
Confidence 777777776644
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=9e-06 Score=57.09 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=33.6
Q ss_pred ceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccC
Q 048216 427 KFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTA 471 (654)
Q Consensus 427 ~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP 471 (654)
++|++|++++| .|..+|..+ ++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N----~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN----QITDLPPEL-SNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS----S-SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC----CCcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence 46899999999 899999888 99999999999999888765
No 61
>PLN03150 hypothetical protein; Provisional
Probab=97.82 E-value=3.9e-05 Score=87.09 Aligned_cols=59 Identities=25% Similarity=0.477 Sum_probs=27.3
Q ss_pred hhhcccceeeEEecCCCCCCCCCC-cCChhHHhcCCCceEEcCCCcccc-ccChhhhcccccccee
Q 048216 421 KICKMFKFLRVLNLGSLLNIPSLK-SLPSSLLSSLLNLYTLDMPFSYID-HTADEFWKVSKLRYLN 484 (654)
Q Consensus 421 ~~~~~l~~Lr~L~L~~~~~lp~i~-~lP~~if~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~ 484 (654)
..+..+++|+.|+|++| .+. .+|.++ ++|.+|++|+|++|.+. .+|..+++|++|++|+
T Consensus 436 ~~i~~L~~L~~L~Ls~N----~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 436 NDISKLRHLQSINLSGN----SIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred HHHhCCCCCCEEECCCC----cccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 33444444444444444 332 444444 44444444444444333 3444444444444444
No 62
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.81 E-value=9.4e-05 Score=83.10 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=74.9
Q ss_pred CCCceechhhHHHHHHHHhcC---CCCcEEEEEEcCCCchHHHHHHHHHccccc---cCCcce--eEEEEeCCCCCHHHH
Q 048216 100 DRDTVGLDNRIEELLDLLIEG---PPQLSVVAVLDSIGLDKTAFAAEAYNSNYV---KHYFDC--RAWVQESLPYDADQL 171 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~~--~~wv~vs~~~~~~~~ 171 (654)
++.+.||++++++|...|... .....++-|+|.+|.|||+.++.|.+.-+- ...... .++|....-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 357889999999999998652 333467789999999999999999873210 112222 345555555678888
Q ss_pred HHHHHHHhCCCCCcccccccChHHHHHHHHHHHc---CCceEEEecccc
Q 048216 172 LYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVM---TKRYLIVLDNFE 217 (654)
Q Consensus 172 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~---~kr~LiVLDDvw 217 (654)
...|..++..... ........ ....+...+. +...+||||+|.
T Consensus 834 YqvI~qqL~g~~P-~~GlsS~e--vLerLF~~L~k~~r~v~IIILDEID 879 (1164)
T PTZ00112 834 YQVLYKQLFNKKP-PNALNSFK--ILDRLFNQNKKDNRNVSILIIDEID 879 (1164)
T ss_pred HHHHHHHHcCCCC-CccccHHH--HHHHHHhhhhcccccceEEEeehHh
Confidence 9999999965433 12222222 3444444442 223589999984
No 63
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.81 E-value=0.00015 Score=73.70 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=80.5
Q ss_pred CCCCceechhhHHHHHHHHhcCCC-CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 048216 99 KDRDTVGLDNRIEELLDLLIEGPP-QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIK 177 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 177 (654)
.++.+.+|+..+..+..++...+. -+..|-|+|-.|.|||.+.+++++.... ..+|+++-+.|....++..|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHH
Confidence 356788999999999999987654 4455689999999999999999995422 3589999999999999999999
Q ss_pred HhCCCCCcccc-----cccChHHHHHHHHH--HHc--CCceEEEeccc
Q 048216 178 LVMPSRRLSEI-----MKESSEMKKIILHE--YVM--TKRYLIVLDNF 216 (654)
Q Consensus 178 ~l~~~~~~~~~-----~~~~~~~~~~~l~~--~L~--~kr~LiVLDDv 216 (654)
++.....+... .+..+ ....+.+ ... ++.++||||++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d--~i~~l~q~~~~t~~d~~~~liLDna 124 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSD--FIYLLVQWPAATNRDQKVFLILDNA 124 (438)
T ss_pred HhccCCCchhhhhhHHHHHHH--HHHHHHhhHHhhccCceEEEEEcCH
Confidence 99522221011 11222 2233333 222 46899999998
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=7.7e-05 Score=78.16 Aligned_cols=161 Identities=18% Similarity=0.171 Sum_probs=100.3
Q ss_pred hcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccC
Q 048216 452 SSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILS 531 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 531 (654)
..+.++..|++++|.+..+|. -..+|++|.++ ++.....+|..+. .+|++|.++.|.. +..
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Ls---nc~nLtsLP~~LP--~nLe~L~Ls~Cs~-----------L~s 109 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIE---NCNNLTTLPGSIP--EGLEKLTVCHCPE-----------ISG 109 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEcc---CCCCcccCCchhh--hhhhheEccCccc-----------ccc
Confidence 558999999999999999992 23469999954 4444456665552 5899999998731 112
Q ss_pred CCCCe-EEEEeecCCCCCCcchhhhcCCCCccEEEEEeec-cCCCCccccccC-cccceEEEeecccCCCeeEEcCCCCc
Q 048216 532 CLESL-KLANESKMPRRSNIILAEYQFPPSLTHLSFSNIE-LMDDPMPALEKL-PVLQVLKLKQNSYSGRKLACSSDGFP 608 (654)
Q Consensus 532 ~~~~L-~L~l~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~-l~~~~l~~l~~l-~~L~~L~L~~~~~~~~~l~~~~~~f~ 608 (654)
+|.+| .|.+.++. .+ .+..+|++|+.|.+.+++ .....++ ..| ++|++|.+.+|... .++ ..-..
T Consensus 110 LP~sLe~L~L~~n~--~~----~L~~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i--~LP--~~LP~ 177 (426)
T PRK15386 110 LPESVRSLEIKGSA--TD----SIKNVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNI--ILP--EKLPE 177 (426)
T ss_pred cccccceEEeCCCC--Cc----ccccCcchHhheeccccccccccccc--cccCCcccEEEecCCCcc--cCc--ccccc
Confidence 33488 88886432 11 234577888988886543 1111111 123 57999999854422 111 11225
Q ss_pred cccEEEEecCCCCcceeEcCcccc-ccceeeeecCcCC
Q 048216 609 KLKVLHLKSMLWLEEWTMGIRAMP-KLECLIINPCAHL 645 (654)
Q Consensus 609 ~L~~L~l~~~~~l~~l~~~~~~~p-~L~~L~i~~C~~L 645 (654)
+|+.|.+..+ ....+......+| ++ .|.+.+|-++
T Consensus 178 SLk~L~ls~n-~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 178 SLQSITLHIE-QKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred cCcEEEeccc-ccccccCccccccccc-Eechhhhccc
Confidence 8999999863 2444544444454 45 8888888554
No 65
>PF05729 NACHT: NACHT domain
Probab=97.70 E-value=9.6e-05 Score=68.70 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=49.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCC----cceeEEEEeCCCCCHH---HHHHHHHHHhCCCCCcccccccChHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHY----FDCRAWVQESLPYDAD---QLLYDIIKLVMPSRRLSEIMKESSEMKK 197 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 197 (654)
|++.|+|.+|+||||+++.++.+-.-... +...+|+..+...+.. .+...|..+...... . ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--------~--~~ 70 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA--------P--IE 70 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh--------h--hH
Confidence 58899999999999999998874322222 4556677665443322 333334333332211 1 11
Q ss_pred HHHHHH-HcCCceEEEecccc
Q 048216 198 IILHEY-VMTKRYLIVLDNFE 217 (654)
Q Consensus 198 ~~l~~~-L~~kr~LiVLDDvw 217 (654)
..+... -+.++++||+|++.
T Consensus 71 ~~~~~~~~~~~~~llilDglD 91 (166)
T PF05729_consen 71 ELLQELLEKNKRVLLILDGLD 91 (166)
T ss_pred HHHHHHHHcCCceEEEEechH
Confidence 112222 25789999999983
No 66
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.66 E-value=0.0014 Score=73.38 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=138.9
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCc----
Q 048216 111 EELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP-YDADQLLYDIIKLVMPSRRL---- 185 (654)
Q Consensus 111 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---- 185 (654)
.++++.|... .+.+.+.|..++|-|||||+-.... +.. .=..+.|.++++. -++..+...++..+..-.+.
T Consensus 25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 3566666554 3689999999999999999988865 111 1235789998654 67888999998888743321
Q ss_pred -------ccccccChHHHHHHHHHHHc--CCceEEEeccccC--------c---------ccccccccCCCC--ce----
Q 048216 186 -------SEIMKESSEMKKIILHEYVM--TKRYLIVLDNFEN--------G---------ENIGLDFVPTRG--PL---- 233 (654)
Q Consensus 186 -------~~~~~~~~~~~~~~l~~~L~--~kr~LiVLDDvw~--------G---------~~v~~~~~~~~~--~~---- 233 (654)
....+... +...+...+. .+...+||||--- | +.+.-.+.+... .+
T Consensus 101 a~~l~q~~~~~~l~~--l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~l 178 (894)
T COG2909 101 AQTLLQKHQYVSLES--LLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARL 178 (894)
T ss_pred HHHHHHhcccccHHH--HHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccce
Confidence 00111122 3333444333 3678999999622 0 111111111100 00
Q ss_pred ----------------------------------e------E-ecCCchHHHHHHH-hhccccccchh---ccCC-----
Q 048216 234 ----------------------------------R------V-TYKGWPFYILYHR-SISQKENIEEA---LDEP----- 263 (654)
Q Consensus 234 ----------------------------------~------v-~c~GlPLai~~~g-~L~~~~~~~~~---l~~~----- 263 (654)
. . ...|.+-|+..++ .++...+..-. +...
T Consensus 179 Rlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~ 258 (894)
T COG2909 179 RLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLS 258 (894)
T ss_pred eehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHH
Confidence 0 2 5678888888888 88743211111 1110
Q ss_pred CchhhhhhcCCchhHHHHHhhhccCCCCceeChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcccccCCCCCCcce
Q 048216 264 RGLQVVAYCMLPFYLKLFCLYLSVFPVHFDICTKQLYQLWIAEGFIPDNNEAAAEKYLEQLINGGFVDAGKRSDISRINT 343 (654)
Q Consensus 264 ~~~l~~sy~~L~~~~k~cfly~s~Fp~~~~i~~~~Li~~Wiaegfi~~~~e~~~~~~~~~L~~~sll~~~~~~~~g~~~~ 343 (654)
--...==++.||+++|.-++-||+++.= -..|+..- +.++-+...+++|-+++++-..-.+. ...
T Consensus 259 dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L--------tg~~ng~amLe~L~~~gLFl~~Ldd~---~~W 323 (894)
T COG2909 259 DYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL--------TGEENGQAMLEELERRGLFLQRLDDE---GQW 323 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH--------hcCCcHHHHHHHHHhCCCceeeecCC---Cce
Confidence 1112223578999999999999998642 23444442 23456778899999999886432221 267
Q ss_pred EEeChhHHHHHHHhhcc
Q 048216 344 CSIPGRCSPALLTVAFE 360 (654)
Q Consensus 344 ~~mhdlv~dla~~i~~~ 360 (654)
|+.|.++.|+.+.-...
T Consensus 324 fryH~LFaeFL~~r~~~ 340 (894)
T COG2909 324 FRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eehhHHHHHHHHhhhcc
Confidence 99999999998776554
No 67
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.61 E-value=9.6e-05 Score=79.73 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.7
Q ss_pred CCceechhhHHH---HHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEE---LLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+++||.+..+.. +.+++..+ ....+-++|.+|+||||||+.+++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 468888877655 77777554 4567888999999999999999983
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=1e-05 Score=79.06 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=114.6
Q ss_pred cceeeEEecCCCCCCCCCCcCCh--hHHhcCCCceEEcCCCccccc---cChhhhccccccceeccccccccCCcccchh
Q 048216 426 FKFLRVLNLGSLLNIPSLKSLPS--SLLSSLLNLYTLDMPFSYIDH---TADEFWKVSKLRYLNFGAITLPAHPGKYCNS 500 (654)
Q Consensus 426 l~~Lr~L~L~~~~~lp~i~~lP~--~if~~L~~L~~L~L~~~~l~~---lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~ 500 (654)
.+.+..|.+.++ .|...-. .+=...+.++.|||.+|.+.. +-.-+.+|+.|+.|+++. ..+.+.
T Consensus 44 ~ra~ellvln~~----~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-------N~L~s~ 112 (418)
T KOG2982|consen 44 LRALELLVLNGS----IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-------NSLSSD 112 (418)
T ss_pred ccchhhheecCC----CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-------CcCCCc
Confidence 334456667777 5544332 220246789999999997764 334456899999999753 223333
Q ss_pred cC----CCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCC--CCCcchhhhcCCCCccEEEEEeeccC
Q 048216 501 LE----NLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPR--RSNIILAEYQFPPSLTHLSFSNIELM 572 (654)
Q Consensus 501 l~----~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~--lp~~~~~~~~lp~~L~~L~L~~~~l~ 572 (654)
|+ .+.+|++|-+.+.....-. .-..+..+| .+ .|+++.+ +.. +-++ .+....+.+.+|.+..|...
T Consensus 113 I~~lp~p~~nl~~lVLNgT~L~w~~---~~s~l~~lP-~vtelHmS~N~~rq~n~Dd~--c~e~~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 113 IKSLPLPLKNLRVLVLNGTGLSWTQ---STSSLDDLP-KVTELHMSDNSLRQLNLDDN--CIEDWSTEVLTLHQLPCLEQ 186 (418)
T ss_pred cccCcccccceEEEEEcCCCCChhh---hhhhhhcch-hhhhhhhccchhhhhccccc--cccccchhhhhhhcCCcHHH
Confidence 33 3468888888775332110 122334444 56 6665532 111 1100 11112134555555555321
Q ss_pred C-CCcccc-ccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeE--cCccccccceeeeecCcCCccc
Q 048216 573 D-DPMPAL-EKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTM--GIRAMPKLECLIINPCAHLKGF 648 (654)
Q Consensus 573 ~-~~l~~l-~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~--~~~~~p~L~~L~i~~C~~L~~l 648 (654)
. .....+ .-+||+..+.+..|......-..+...||.+-.|.+.. .++.+|-. ....||.|..|.+.+.|-...+
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 0 000111 24788888888865544444444556788888888886 67777742 2346899999998887755443
No 69
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=3.7e-05 Score=71.77 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=28.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHcccccc-CCcceeEE
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVK-HYFDCRAW 159 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 159 (654)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999965444 45777775
No 70
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=7.5e-05 Score=84.70 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=82.2
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccC--hhhh
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTA--DEFW 475 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP--~~i~ 475 (654)
+|.||+|.+.+.... ...+...+.++++|+.||+|++ +++.+ ..| ++|+|||+|.+++=.+..-+ ..+.
T Consensus 147 LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~T----nI~nl-~GI-S~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGT----NISNL-SGI-SRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred CcccceEEecCceec---chhHHHHhhccCccceeecCCC----CccCc-HHH-hccccHHHHhccCCCCCchhhHHHHh
Confidence 899999999987764 2335577889999999999999 88888 788 99999999999876555433 3577
Q ss_pred ccccccceeccccccccC---CcccchhcCCCCCCCeEEEeccCCc
Q 048216 476 KVSKLRYLNFGAITLPAH---PGKYCNSLENLNFISALHHCYCTED 518 (654)
Q Consensus 476 ~L~~L~~L~l~~l~~l~~---~~~l~~~l~~l~~L~~L~l~~~~~~ 518 (654)
+|++|++||+|.=.+... .....+.-..|++|+.|+.++.+.+
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 999999999865111100 1111223345789999999987543
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.39 E-value=2.9e-05 Score=84.01 Aligned_cols=103 Identities=19% Similarity=0.154 Sum_probs=51.3
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+.++..|.+.++.... +...+..+.+|++|+|++| .|..+.. + ..|..|+.|++.+|.+..++ .+..+
T Consensus 94 ~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N----~I~~i~~-l-~~l~~L~~L~l~~N~i~~~~-~~~~l 161 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFN----KITKLEG-L-STLTLLKELNLSGNLISDIS-GLESL 161 (414)
T ss_pred ccceeeeeccccchhh-----cccchhhhhcchheecccc----ccccccc-h-hhccchhhheeccCcchhcc-CCccc
Confidence 4555555555555431 1122455666666666666 5555542 3 55666666666666555553 33445
Q ss_pred ccccceeccccccccCCcccchh-cCCCCCCCeEEEeccC
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNS-LENLNFISALHHCYCT 516 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~-l~~l~~L~~L~l~~~~ 516 (654)
.+|+.+++++ . ....+... +..+.+|+.+.+..+.
T Consensus 162 ~~L~~l~l~~---n-~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 162 KSLKLLDLSY---N-RIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hhhhcccCCc---c-hhhhhhhhhhhhccchHHHhccCCc
Confidence 5555555433 1 01111111 3455555556555553
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.33 E-value=8.7e-06 Score=88.29 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccc
Q 048216 442 SLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGA 487 (654)
Q Consensus 442 ~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~ 487 (654)
.+..+.+++ .-|+.|+.|||++|++...- .+..|.+|+|||++.
T Consensus 175 ~L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 175 RLVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY 218 (1096)
T ss_pred hHHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhccccccccccc
Confidence 555566666 66677777777777666654 666677777777654
No 73
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.25 E-value=0.00049 Score=67.31 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=29.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEe
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQE 162 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 162 (654)
-.++|+|..|.|||||...+.. .....|+.+.+++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 4677999999999999999987 57778977776654
No 74
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.23 E-value=0.0022 Score=64.36 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=98.8
Q ss_pred CCCceech---hhHHHHHHHHhcC-CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcc------eeEEEEeCCCCCHH
Q 048216 100 DRDTVGLD---NRIEELLDLLIEG-PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFD------CRAWVQESLPYDAD 169 (654)
Q Consensus 100 ~~~~vGr~---~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~------~~~wv~vs~~~~~~ 169 (654)
.+..||-. +..+++.++|... .....-+.|||-.|.|||+++++..++.- ..++ .++-|......+..
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp--~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP--PQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC--CCCCCCCccccEEEEecCCCCChH
Confidence 34566633 3344555555543 34567799999999999999999886321 1121 35567778889999
Q ss_pred HHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHcC-CceEEEeccccC---c-----ccccccccCCCCceeE--ecC
Q 048216 170 QLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMT-KRYLIVLDNFEN---G-----ENIGLDFVPTRGPLRV--TYK 238 (654)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LiVLDDvw~---G-----~~v~~~~~~~~~~~~v--~c~ 238 (654)
++...|+.+++.... ....... +...+...++. +-=+||+|.+-+ | ..+......-....++ -|-
T Consensus 111 ~~Y~~IL~~lgaP~~--~~~~~~~--~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 111 RFYSAILEALGAPYR--PRDRVAK--LEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HHHHHHHHHhCcccC--CCCCHHH--HHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 999999999998765 3333344 55555566654 334789999966 4 1111111100011112 456
Q ss_pred CchHHHHHHH---hhccc----cccchhccCCCchhhhhhcC
Q 048216 239 GWPFYILYHR---SISQK----ENIEEALDEPRGLQVVAYCM 273 (654)
Q Consensus 239 GlPLai~~~g---~L~~~----~~~~~~l~~~~~~l~~sy~~ 273 (654)
|.+-|..++. .|.++ .--.|+..+++..|-.||..
T Consensus 187 Gt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 187 GTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFER 228 (302)
T ss_pred ccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHH
Confidence 7777776655 44444 22245554444444444443
No 75
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.22 E-value=0.00026 Score=80.39 Aligned_cols=111 Identities=21% Similarity=0.140 Sum_probs=80.4
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
-.+|+.|.+.|.... +..++...-..+|.||.|.+++-.+ .-..+ ..++.+++||..||+++|++..+ .++++|
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF-~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQF--DNDDF-SQLCASFPNLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCcee--cchhH-HHHhhccCccceeecCCCCccCc-HHHhcc
Confidence 567888888775432 4556777778899999999998631 11122 23447899999999999999999 899999
Q ss_pred ccccceeccccccccCCc-ccchhcCCCCCCCeEEEeccCC
Q 048216 478 SKLRYLNFGAITLPAHPG-KYCNSLENLNFISALHHCYCTE 517 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~-~l~~~l~~l~~L~~L~l~~~~~ 517 (654)
++|+.|.+ .++.... .--..+.+|++|+.|++|....
T Consensus 195 knLq~L~m---rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 195 KNLQVLSM---RNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred ccHHHHhc---cCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 99999994 4553222 1224567889999999987543
No 76
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.20 E-value=0.00085 Score=59.94 Aligned_cols=86 Identities=9% Similarity=0.010 Sum_probs=45.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYV 204 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 204 (654)
..+.|+|.+|+||||+|+.+.. .........+.+..+........... ......... .... .. ....+.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~-~~--~~~~~~~~~ 74 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKA--SGSG-EL--RLRLALALA 74 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH-hhhhhccCC--CCCH-HH--HHHHHHHHH
Confidence 5789999999999999999998 33333223444444333222222211 011111110 1111 11 333444444
Q ss_pred cCCc-eEEEeccccC
Q 048216 205 MTKR-YLIVLDNFEN 218 (654)
Q Consensus 205 ~~kr-~LiVLDDvw~ 218 (654)
+..+ .+|++|++..
T Consensus 75 ~~~~~~viiiDei~~ 89 (148)
T smart00382 75 RKLKPDVLILDEITS 89 (148)
T ss_pred HhcCCCEEEEECCcc
Confidence 4444 9999999965
No 77
>PRK07261 topology modulation protein; Provisional
Probab=97.19 E-value=0.0013 Score=61.66 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=24.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcccccc-CCcceeEE
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSNYVK-HYFDCRAW 159 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 159 (654)
.|.|+|++|+||||||+.+.....+. -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999987632221 13455555
No 78
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.17 E-value=0.00033 Score=67.11 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=36.7
Q ss_pred CCCceechhhHHHHHHHHhc---CCCCcEEEEEEcCCCchHHHHHHHHHccccccCCc
Q 048216 100 DRDTVGLDNRIEELLDLLIE---GPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF 154 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 154 (654)
-+++||-+.-++.+.-++.. .++.+.-+-.||++|+||||||+.+.+ +....|
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 46799999888887655542 345678888999999999999999999 555555
No 79
>PRK04195 replication factor C large subunit; Provisional
Probab=97.16 E-value=0.0012 Score=72.90 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=40.3
Q ss_pred CCceechhhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+++|.++.++.+.+|+..- +...+.+-|+|.+|+||||+|++++++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999752 223688999999999999999999994
No 80
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.14 E-value=0.00015 Score=72.87 Aligned_cols=193 Identities=20% Similarity=0.149 Sum_probs=116.6
Q ss_pred hhHhhhcccceeeEEecCCCCCCC-CCCcCChhHHhcCCCceEEcCCCccccccChh--------------hhccccccc
Q 048216 418 YCEKICKMFKFLRVLNLGSLLNIP-SLKSLPSSLLSSLLNLYTLDMPFSYIDHTADE--------------FWKVSKLRY 482 (654)
Q Consensus 418 ~~~~~~~~l~~Lr~L~L~~~~~lp-~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~--------------i~~L~~L~~ 482 (654)
.+...+..+++|++||||.|.+=| .+..+-+-| .....|+.|.|.+|.+...-.. +.+-.+||.
T Consensus 83 ~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll-~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv 161 (382)
T KOG1909|consen 83 MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELL-SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRV 161 (382)
T ss_pred HHHHHHhcCCceeEeeccccccCccchHHHHHHH-HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEE
Confidence 345566777888899998885411 223344455 7788888888888866533211 234456777
Q ss_pred eecccccccc----CCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeecCCC------CCCcc
Q 048216 483 LNFGAITLPA----HPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESKMPR------RSNII 551 (654)
Q Consensus 483 L~l~~l~~l~----~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~~~------lp~~~ 551 (654)
+.. .+-+ ....+...+...+.|+.+.+..|....-...-....+..++ +| .|++..+.-. +..
T Consensus 162 ~i~---~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~Lak-- 235 (382)
T KOG1909|consen 162 FIC---GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAK-- 235 (382)
T ss_pred EEe---eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHH--
Confidence 763 2222 12233455666788888888887542211001345677777 88 9998865311 122
Q ss_pred hhhhcCCCCccEEEEEeeccCCCCcccc-----ccCcccceEEEeecccCCCe---eEEcCCCCccccEEEEecCC
Q 048216 552 LAEYQFPPSLTHLSFSNIELMDDPMPAL-----EKLPVLQVLKLKQNSYSGRK---LACSSDGFPKLKVLHLKSML 619 (654)
Q Consensus 552 ~~~~~lp~~L~~L~L~~~~l~~~~l~~l-----~~l~~L~~L~L~~~~~~~~~---l~~~~~~f~~L~~L~l~~~~ 619 (654)
.+..+ ++|+.|++++|.+.......+ ...|+|+.|.+.+|...... +......-|.|+.|.++++.
T Consensus 236 -aL~s~-~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 236 -ALSSW-PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred -Hhccc-chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 33356 789999999998765543332 24789999999865432211 11112236888999888853
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.12 E-value=0.0011 Score=66.94 Aligned_cols=73 Identities=12% Similarity=0.184 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHE 202 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 202 (654)
.+.-+-.||.+|.||||||+.+.+..+-.. .-||..|..-.-..=.++|+++-... .
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~-------------------~ 217 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE-------------------K 217 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH-------------------H
Confidence 567777999999999999999999654444 44777776544444444554443211 2
Q ss_pred HHcCCceEEEeccccC
Q 048216 203 YVMTKRYLIVLDNFEN 218 (654)
Q Consensus 203 ~L~~kr~LiVLDDvw~ 218 (654)
.+.++|..|.+|.|..
T Consensus 218 ~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHR 233 (554)
T ss_pred hhhcceeEEEeHHhhh
Confidence 3457888999999844
No 82
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.10 E-value=0.0056 Score=71.72 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=41.8
Q ss_pred CceechhhHHHHHHHHhcC-CCCcEEEEEEcCCCchHHHHHHHHHccccccCC
Q 048216 102 DTVGLDNRIEELLDLLIEG-PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY 153 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 153 (654)
+++||+.+++.|...+..- .....|+.+.|..|||||+|+++|.. .+...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcc
Confidence 4789999999999998763 44667999999999999999999998 44444
No 83
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0016 Score=67.08 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=43.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHE 202 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 202 (654)
.+.-.-.||++|+||||||+.+.. .....| ..+|..++-.+=++.+++. .-+.
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~--------------------a~~~ 99 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEE--------------------ARKN 99 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHH--------------------HHHH
Confidence 455566899999999999999998 444444 3444443322222222221 1123
Q ss_pred HHcCCceEEEeccccC
Q 048216 203 YVMTKRYLIVLDNFEN 218 (654)
Q Consensus 203 ~L~~kr~LiVLDDvw~ 218 (654)
...|+|.+|.+|.|..
T Consensus 100 ~~~gr~tiLflDEIHR 115 (436)
T COG2256 100 RLLGRRTILFLDEIHR 115 (436)
T ss_pred HhcCCceEEEEehhhh
Confidence 3458999999999955
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.09 E-value=0.0014 Score=75.00 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=36.9
Q ss_pred CCceechhhHH---HHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCc
Q 048216 101 RDTVGLDNRIE---ELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF 154 (654)
Q Consensus 101 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 154 (654)
++++|.+..+. .+.+.+..+ ....+-++|++|+||||||+.+++ .....|
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 46889888774 455555544 455678999999999999999998 444444
No 85
>PF13173 AAA_14: AAA domain
Probab=97.07 E-value=0.00065 Score=60.40 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeC
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQES 163 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 163 (654)
-+++.|.|+-|+|||||++.++++.. .....+++...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~ 38 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFD 38 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccC
Confidence 36899999999999999999997432 22445555543
No 86
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.04 E-value=0.0014 Score=67.89 Aligned_cols=218 Identities=20% Similarity=0.139 Sum_probs=130.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcc-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFD-CRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILH 201 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 201 (654)
..+.+.++|.|||||||++-.+.. +..-|. .++++....--|...+.-.....+..... . -+. -...+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~--~---g~~--~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ--P---GDS--AVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc--c---chH--HHHHHH
Confidence 468999999999999999988876 666785 45555555445555555555555655433 1 112 344677
Q ss_pred HHHcCCceEEEeccccC--------------------------------c---ccccccccCCC---------------C
Q 048216 202 EYVMTKRYLIVLDNFEN--------------------------------G---ENIGLDFVPTR---------------G 231 (654)
Q Consensus 202 ~~L~~kr~LiVLDDvw~--------------------------------G---~~v~~~~~~~~---------------~ 231 (654)
.+..++|.++|+||.-+ | ..+........ .
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 78889999999999744 0 00110000000 0
Q ss_pred cee---------E--ecCCchHHHHHHH-hhccc--cccc------hh-ccC---------C--CchhhhhhcCCchhHH
Q 048216 232 PLR---------V--TYKGWPFYILYHR-SISQK--ENIE------EA-LDE---------P--RGLQVVAYCMLPFYLK 279 (654)
Q Consensus 232 ~~~---------v--~c~GlPLai~~~g-~L~~~--~~~~------~~-l~~---------~--~~~l~~sy~~L~~~~k 279 (654)
... + +..|.|++|...+ ..+.- +.+. +. +.. . .+.+.+||.-|....+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 000 3 6689999998887 66654 1111 11 111 0 7889999999999999
Q ss_pred HHHhhhccCCCCceeChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcccccCCCCCCcceEEeChhHHHHHHHh
Q 048216 280 LFCLYLSVFPVHFDICTKQLYQLWIAEGFIPDNNEAAAEKYLEQLINGGFVDAGKRSDISRINTCSIPGRCSPALLTV 357 (654)
Q Consensus 280 ~cfly~s~Fp~~~~i~~~~Li~~Wiaegfi~~~~e~~~~~~~~~L~~~sll~~~~~~~~g~~~~~~mhdlv~dla~~i 357 (654)
--|.-++.|...+... ...|.+-|=.-..+.-....-+..+++++++....... ...|+.-+-.+.++..+
T Consensus 243 ~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~---~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 243 ALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLG---RARYRLLETGRRYALAE 313 (414)
T ss_pred HHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhh---HHHHHHHHHHHHHHHHH
Confidence 9999999998876544 23455544221112223344456678888776544211 13455555555555443
No 87
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.04 E-value=0.0012 Score=70.13 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=38.6
Q ss_pred CCCCceechhhHHHHHHHHhcC--C---------CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIEG--P---------PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~--~---------~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...++.|+++.+++|.+.+... . ...+-|.++|.+|+|||++|+++++
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999887431 1 2345688999999999999999999
No 88
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.00 E-value=0.0015 Score=65.25 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=55.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh-----
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFD-CRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS----- 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~----- 193 (654)
.-+-++|.|-.|+||||||+.+++ .++.+|+ .++++-+.+.. .+.++.+++...=.....- ....+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346789999999999999999999 6666664 44455666654 4456666655431111110 01111111
Q ss_pred -HHHHHHHHHHH---cCCceEEEeccc
Q 048216 194 -EMKKIILHEYV---MTKRYLIVLDNF 216 (654)
Q Consensus 194 -~~~~~~l~~~L---~~kr~LiVLDDv 216 (654)
....-.+.+++ ++|.+|||+||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 00223345555 389999999998
No 89
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.97 E-value=0.0028 Score=71.61 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=45.7
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCc---ceeEEEEeC
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF---DCRAWVQES 163 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs 163 (654)
++++|.+..+..+.+.+... ....+.|+|.+|+||||||+.+++.......+ ...-|+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 46999999999988887543 45679999999999999999999855433333 234566654
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.96 E-value=0.0019 Score=75.78 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=37.3
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++||+++++++++.|.... .+-+.++|.+|+|||++|+.+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998753 22345999999999999998887
No 91
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.94 E-value=0.002 Score=63.40 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=36.4
Q ss_pred chhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEE
Q 048216 106 LDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQ 161 (654)
Q Consensus 106 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 161 (654)
.+..++.+.+++... ....|-|+|..|+||||||+.+++. ........+++.
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~ 73 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLP 73 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEe
Confidence 556677777776533 4578889999999999999999983 322333344554
No 92
>PRK12377 putative replication protein; Provisional
Probab=96.91 E-value=0.0037 Score=62.02 Aligned_cols=72 Identities=17% Similarity=0.060 Sum_probs=45.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEY 203 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 203 (654)
...+.|+|..|+|||+||.++.+ .+....-.++++++ .+++..|-....... . ... +.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~------~~l~~~l~~~~~~~~---------~--~~~-~l~~ 160 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV------PDVMSRLHESYDNGQ---------S--GEK-FLQE 160 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH------HHHHHHHHHHHhccc---------h--HHH-HHHH
Confidence 46789999999999999999999 44444444566643 345555544432110 1 111 2222
Q ss_pred HcCCceEEEeccc
Q 048216 204 VMTKRYLIVLDNF 216 (654)
Q Consensus 204 L~~kr~LiVLDDv 216 (654)
+ .+-=||||||+
T Consensus 161 l-~~~dLLiIDDl 172 (248)
T PRK12377 161 L-CKVDLLVLDEI 172 (248)
T ss_pred h-cCCCEEEEcCC
Confidence 2 45669999998
No 93
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.90 E-value=0.0028 Score=65.90 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCc-ce-eEEEEeCCC-CCHHHHHHHHHHHhCCCCC--
Q 048216 110 IEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF-DC-RAWVQESLP-YDADQLLYDIIKLVMPSRR-- 184 (654)
Q Consensus 110 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~-- 184 (654)
..++++.+..-. .-.-+.|+|..|+|||||++.+.+ .+...- +. ++|+.+.+. -.+.++.+.+...+.....
T Consensus 120 ~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 120 SMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 345677665422 235669999999999999999888 333322 44 367677665 5788899998887765432
Q ss_pred c-ccccccChHHHHHHHHHHH--cCCceEEEeccc
Q 048216 185 L-SEIMKESSEMKKIILHEYV--MTKRYLIVLDNF 216 (654)
Q Consensus 185 ~-~~~~~~~~~~~~~~l~~~L--~~kr~LiVLDDv 216 (654)
+ ........ ....+.+++ ++++++||+|++
T Consensus 197 ~~~~~~~v~~--~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 197 PPDEHIRVAE--LVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CHHHHHHHHH--HHHHHHHHHHHcCCCEEEEEeCc
Confidence 0 00011111 111222222 589999999998
No 94
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.90 E-value=0.00056 Score=47.99 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=26.6
Q ss_pred CCceEEcCCCccccccChhhhccccccceeccc
Q 048216 455 LNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGA 487 (654)
Q Consensus 455 ~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~ 487 (654)
++|++|++++|.+..+|..+++|++|++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 478999999999999998888998888888654
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=96.87 E-value=0.0025 Score=62.90 Aligned_cols=37 Identities=5% Similarity=-0.060 Sum_probs=27.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEe
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQE 162 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 162 (654)
.+.+-|+|..|+|||+||+++++ ........+.++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeH
Confidence 46789999999999999999998 33333334566664
No 96
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.019 Score=56.84 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=50.3
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccc
Q 048216 109 RIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEI 188 (654)
Q Consensus 109 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 188 (654)
.+..+.+....-......+-++|.+|+|||+||.++.+. ....-..++++ +..+++..+-...... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~i------t~~~l~~~l~~~~~~~-----~ 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLII------TVADIMSAMKDTFSNS-----E 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEE------EHHHHHHHHHHHHhhc-----c
Confidence 344455555432333457889999999999999999993 33322344555 3455555554443211 0
Q ss_pred cccChHHHHHHHHHHHcCCceEEEeccc
Q 048216 189 MKESSEMKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 189 ~~~~~~~~~~~l~~~L~~kr~LiVLDDv 216 (654)
. ....+.+.+. +.=+||+||+
T Consensus 151 ~------~~~~~l~~l~-~~dlLvIDDi 171 (244)
T PRK07952 151 T------SEEQLLNDLS-NVDLLVIDEI 171 (244)
T ss_pred c------cHHHHHHHhc-cCCEEEEeCC
Confidence 1 1122333454 4458888998
No 97
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.85 E-value=0.0012 Score=68.39 Aligned_cols=46 Identities=15% Similarity=0.327 Sum_probs=40.5
Q ss_pred CceechhhHHHHHHHHhcC----CCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 102 DTVGLDNRIEELLDLLIEG----PPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+++|.++.++++++++... +..-++++++|.+|.||||||+++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999752 335689999999999999999999884
No 98
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.84 E-value=0.0031 Score=66.25 Aligned_cols=44 Identities=25% Similarity=0.223 Sum_probs=37.8
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|++..++.+.+++..+ ..+.+-++|..|+||||+|+++.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999988765 344577999999999999999987
No 99
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.84 E-value=0.0031 Score=73.11 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=37.3
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++++||+++++++++.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 479999999999999887663 23456899999999999999987
No 100
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.84 E-value=0.00082 Score=58.93 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 101
>PRK08116 hypothetical protein; Validated
Probab=96.83 E-value=0.0059 Score=61.63 Aligned_cols=73 Identities=22% Similarity=0.153 Sum_probs=45.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYV 204 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 204 (654)
.-+.++|..|+|||.||.++++ .+..+-..+++++ ..+++..|......... . -...+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~----~------~~~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK----E------DENEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhcccc----c------cHHHHHHHh
Confidence 4578999999999999999999 4443333445553 45566666655543211 1 112233445
Q ss_pred cCCceEEEeccc
Q 048216 205 MTKRYLIVLDNF 216 (654)
Q Consensus 205 ~~kr~LiVLDDv 216 (654)
.+-. ||||||+
T Consensus 177 ~~~d-lLviDDl 187 (268)
T PRK08116 177 VNAD-LLILDDL 187 (268)
T ss_pred cCCC-EEEEecc
Confidence 4433 8999998
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.80 E-value=0.0031 Score=67.34 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=38.0
Q ss_pred CCCceechhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEG-----------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++.|+++.+++|.+.+... -...+-|-++|.+|.|||++|+++++
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 346789999999998877421 13456688999999999999999998
No 103
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.78 E-value=0.0014 Score=58.29 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHcc
Q 048216 127 VAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~~ 147 (654)
|-|+|..|+||||+|+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999994
No 104
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.76 E-value=0.0024 Score=60.23 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=29.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEE
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWV 160 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 160 (654)
...+|.|.|+.|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999998 555556666665
No 105
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.75 E-value=0.0048 Score=60.70 Aligned_cols=98 Identities=13% Similarity=0.045 Sum_probs=55.4
Q ss_pred HHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHH----hCCCCCcccccc
Q 048216 115 DLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKL----VMPSRRLSEIMK 190 (654)
Q Consensus 115 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~----l~~~~~~~~~~~ 190 (654)
++|..+=..-.++-|+|.+|.|||++|.++.. .....-..++|++.. .++..++.+ +... +..+..-....+
T Consensus 14 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~ 89 (225)
T PRK09361 14 ELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSS 89 (225)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCC
Confidence 33433334568999999999999999988876 333334678899876 666655432 2222 110000001111
Q ss_pred cCh-HHHHHHHHHHHcCCceEEEeccc
Q 048216 191 ESS-EMKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 191 ~~~-~~~~~~l~~~L~~kr~LiVLDDv 216 (654)
..+ ......+.+.++.+--+||+|.+
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 90 FEEQSEAIRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHHHHHHHHhcccEEEEeCc
Confidence 111 00233444444466679999997
No 106
>PRK06696 uridine kinase; Validated
Probab=96.75 E-value=0.0019 Score=63.40 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=35.7
Q ss_pred echhhHHHHHHHHhc-CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 105 GLDNRIEELLDLLIE-GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 105 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|++.+++|.+.+.. ......+|+|.|.+|+||||||+.+.+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 367778888888875 345789999999999999999999987
No 107
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.68 E-value=0.0054 Score=60.79 Aligned_cols=94 Identities=10% Similarity=0.095 Sum_probs=55.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHccccccCC----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-------ccccc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY----FDCRAWVQESLPYDADQLLYDIIKLVMPSRRL-------SEIMK 190 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 190 (654)
..-.++.|+|.+|+||||||..+.-....... -..++|++-...++..++.+ +++........ ....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 45689999999999999999888642222221 36789999888887765543 33333221110 01111
Q ss_pred cCh-HHHHHHHHHHHc-C-CceEEEeccc
Q 048216 191 ESS-EMKKIILHEYVM-T-KRYLIVLDNF 216 (654)
Q Consensus 191 ~~~-~~~~~~l~~~L~-~-kr~LiVLDDv 216 (654)
.++ ......+.+.+. . +--|||+|-+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 111 002344444443 3 5679999998
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.67 E-value=0.0046 Score=72.63 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=37.4
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997763 23455899999999999998887
No 109
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.66 E-value=0.00021 Score=77.39 Aligned_cols=173 Identities=24% Similarity=0.246 Sum_probs=117.9
Q ss_pred hhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchh
Q 048216 421 KICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNS 500 (654)
Q Consensus 421 ~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~ 500 (654)
..+..++.|..|++.+| .|.++...+ ..+.+|++|++++|.|..+. ++..|..|+.|++.+ +.-.-...
T Consensus 89 ~~l~~~~~l~~l~l~~n----~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-----N~i~~~~~ 157 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDN----KIEKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-----NLISDISG 157 (414)
T ss_pred cccccccceeeeecccc----chhhcccch-hhhhcchheecccccccccc-chhhccchhhheecc-----CcchhccC
Confidence 44788999999999999 888888767 89999999999999999884 678888899999754 11222234
Q ss_pred cCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeecCCCCCCcchhhhcCCCCccEEEEEeeccCCCCcccc
Q 048216 501 LENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPAL 579 (654)
Q Consensus 501 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l 579 (654)
+..+.+|+.|++++|....+. ... +.... ++ .+.+.++.-.-.. ++..+ ..+..+++..+.+. .+..+
T Consensus 158 ~~~l~~L~~l~l~~n~i~~ie---~~~-~~~~~-~l~~l~l~~n~i~~i~---~~~~~-~~l~~~~l~~n~i~--~~~~l 226 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNRIVDIE---NDE-LSELI-SLEELDLGGNSIREIE---GLDLL-KKLVLLSLLDNKIS--KLEGL 226 (414)
T ss_pred CccchhhhcccCCcchhhhhh---hhh-hhhcc-chHHHhccCCchhccc---chHHH-HHHHHhhcccccce--eccCc
Confidence 455788999999988665553 101 34455 77 7888776544444 56666 77777777777652 33334
Q ss_pred ccCcc--cceEEEeecccCCCeeEEcCCCCccccEEEEec
Q 048216 580 EKLPV--LQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKS 617 (654)
Q Consensus 580 ~~l~~--L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~ 617 (654)
..++. |+.+++.++..... ......++.+..|++.+
T Consensus 227 ~~~~~~~L~~l~l~~n~i~~~--~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 227 NELVMLHLRELYLSGNRISRS--PEGLENLKNLPVLDLSS 264 (414)
T ss_pred ccchhHHHHHHhcccCccccc--cccccccccccccchhh
Confidence 44444 88888885443221 12334566777777765
No 110
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.011 Score=62.14 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=76.0
Q ss_pred CCCCceechhhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 048216 99 KDRDTVGLDNRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDII 176 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 176 (654)
.+..++||+.++..+.+++... .+...-+-|.|-+|.|||.+...|+.+..-...=-+++.+..-.--....+...|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 3567999999999999999764 34567788899999999999999998542211111334444333345677888888
Q ss_pred HHhCCCCCcccccccChHHHHHHHHHHHcCC--ceEEEecccc
Q 048216 177 KLVMPSRRLSEIMKESSEMKKIILHEYVMTK--RYLIVLDNFE 217 (654)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LiVLDDvw 217 (654)
..+..... ......+ .++.+.+..++. -+|+|||.+.
T Consensus 228 ~~~~q~~~--s~~~~~~--~~~~~~~h~~q~k~~~llVlDEmD 266 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQ--HLEKFEKHTKQSKFMLLLVLDEMD 266 (529)
T ss_pred HHHHHHhc--CCchhHH--HHHHHHHHHhcccceEEEEechhh
Confidence 88722111 1111123 566666666554 4899999983
No 111
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.0068 Score=66.92 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=38.6
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|-+..++.+...+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999987652 345677899999999999999987
No 112
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.62 E-value=0.0074 Score=62.76 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=39.7
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|.++.++.+..++..+. -..++-++|..|+||||+|+++++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 3578999999999999997653 456777899999999999999998
No 113
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.61 E-value=0.0051 Score=72.07 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=37.6
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 579999999999999987763 23445999999999999999987
No 114
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.60 E-value=0.0046 Score=67.54 Aligned_cols=50 Identities=28% Similarity=0.224 Sum_probs=38.9
Q ss_pred CCCCCceechhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIEG-----------PPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+.-.++.|.+..+++|.+.+... -...+-|-++|.+|.|||++|+++++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 33456889999999998886421 123456889999999999999999993
No 115
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.012 Score=61.13 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc----ccccCCcceeEEEE-eCCCCCHHHHHHHH
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS----NYVKHYFDCRAWVQ-ESLPYDADQLLYDI 175 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 175 (654)
.+++|-+..++.+.+.+..+. -...+-++|+.|+||||+|+.+++. .....|+|...|.. -++...+.+ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 468899999999999987652 4467789999999999999988872 12345667666655 334444444 3334
Q ss_pred HHHh
Q 048216 176 IKLV 179 (654)
Q Consensus 176 ~~~l 179 (654)
.+.+
T Consensus 82 ~~~~ 85 (313)
T PRK05564 82 IEEV 85 (313)
T ss_pred HHHH
Confidence 4443
No 116
>PLN03025 replication factor C subunit; Provisional
Probab=96.58 E-value=0.0068 Score=63.07 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=36.2
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|.++.++.|.+++..+ +.+.+-++|..|+||||+|+.+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 46889998888888877654 344567999999999999999987
No 117
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.001 Score=73.11 Aligned_cols=61 Identities=20% Similarity=0.015 Sum_probs=44.5
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEe
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQE 162 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 162 (654)
.+++|-+..++.|.+++..+. -...+-++|..|+||||+|+.+++.-.-.+.+...+|.|.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 468999999999998887763 3456799999999999999999884322223333455543
No 118
>PHA00729 NTP-binding motif containing protein
Probab=96.57 E-value=0.0056 Score=59.29 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 112 ELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 112 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++++.+... +...|.|.|.+|+||||||.++.+
T Consensus 7 ~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 344445444 445789999999999999999988
No 119
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.012 Score=62.34 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=39.2
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|-+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence 3578999999999999887652 346778999999999999999987
No 120
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.0092 Score=68.45 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=38.7
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk 60 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAK 60 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999987652 345568999999999999999987
No 121
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.47 E-value=8.3e-05 Score=80.96 Aligned_cols=107 Identities=14% Similarity=0.001 Sum_probs=77.7
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
++.+++|.+..|.... ...+..+++|+.|||++| .+..+|.--.... +|+.|.+++|.+++| .+|.+|
T Consensus 186 l~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN----~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~L 253 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYN----CLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENL 253 (1096)
T ss_pred HHHhhhhccchhhhhh------hHHHHhcccccccccccc----hhccccccchhhh-hheeeeecccHHHhh-hhHHhh
Confidence 8899999999887642 247889999999999999 7777775220233 399999999999888 579999
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCc
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTED 518 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~ 518 (654)
++|++||++. ||-....--.-+..|..|..|.+.+|...
T Consensus 254 ksL~~LDlsy--Nll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSY--NLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhH--hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999865 22100111123445678888999988653
No 122
>PRK07667 uridine kinase; Provisional
Probab=96.46 E-value=0.0038 Score=59.84 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 110 IEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 110 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+.|.+.+........+|||-|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777766655669999999999999999999987
No 123
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.43 E-value=0.018 Score=56.57 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=57.7
Q ss_pred HHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCc------ceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----
Q 048216 115 DLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF------DCRAWVQESLPYDADQLLYDIIKLVMPSRR---- 184 (654)
Q Consensus 115 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---- 184 (654)
++|..+=..-.++.|+|.+|.|||+||..+.-. ....- ..++|+.....++..++.+ +.........
T Consensus 10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~ 86 (226)
T cd01393 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLD 86 (226)
T ss_pred HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhc
Confidence 333333345689999999999999999887652 22223 4678998888888766543 3333222110
Q ss_pred c---ccccccChHHHHHHHHHHHc---C-CceEEEeccc
Q 048216 185 L---SEIMKESSEMKKIILHEYVM---T-KRYLIVLDNF 216 (654)
Q Consensus 185 ~---~~~~~~~~~~~~~~l~~~L~---~-kr~LiVLDDv 216 (654)
. ....+.++ +...+.+... . +--|||+|.+
T Consensus 87 ~i~~~~~~~~~~--~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 87 NIYVARPYNGEQ--QLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred cEEEEeCCCHHH--HHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 0 11122333 5555555443 3 4458999997
No 124
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.014 Score=63.67 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=37.5
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-+++||.+..+..|...+..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3569999988888888776652 335678999999999999999987
No 125
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.36 E-value=0.0091 Score=70.40 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=37.0
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.++||+.++.+++..|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 469999999999999997753 23345899999999999998887
No 126
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.36 E-value=0.0096 Score=57.81 Aligned_cols=89 Identities=8% Similarity=0.044 Sum_probs=53.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHh----CCCCC---cccccccChH
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLV----MPSRR---LSEIMKESSE 194 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l----~~~~~---~~~~~~~~~~ 194 (654)
..-+++-|+|.+|+|||++|.++.. .....-..++|++... +...++.+.. +.. ..+-. ..+..+...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~~~-~~~~~~~~~~i~~~~~~~~~~~~~- 84 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQIA-EDRPERALSNFIVFEVFDFDEQGV- 84 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHHHH-HhChHHHhcCEEEEECCCHHHHHH-
Confidence 4568999999999999999988766 3333456789998865 7776655432 221 11000 001111112
Q ss_pred HHHHHHHHHHcC-CceEEEeccc
Q 048216 195 MKKIILHEYVMT-KRYLIVLDNF 216 (654)
Q Consensus 195 ~~~~~l~~~L~~-kr~LiVLDDv 216 (654)
....+.+.+.. +--+||+|-+
T Consensus 85 -~~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 85 -AIQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred -HHHHHHHHHhhcCccEEEEeCc
Confidence 34455555543 4558999987
No 127
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.0039 Score=61.27 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=40.2
Q ss_pred CCCceechhhHHHHHHHHhc---CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIE---GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-++-++++.=.+.. .+..+--|-++|++|.||||||.-+.+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence 35799999999988777754 256788899999999999999999999
No 128
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.31 E-value=0.0043 Score=67.59 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=39.5
Q ss_pred CceechhhHHHHHHHHhc----CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 102 DTVGLDNRIEELLDLLIE----GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+++|.++.+++|++.|.. -+..-+++.++|+.|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 689999999999999933 244668999999999999999999987
No 129
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.30 E-value=0.00035 Score=71.78 Aligned_cols=140 Identities=20% Similarity=0.214 Sum_probs=83.6
Q ss_pred CCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeecCCCCCCc-chhhh-cCCCCccEEEEEeeccCCCC-ccc
Q 048216 503 NLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESKMPRRSNI-ILAEY-QFPPSLTHLSFSNIELMDDP-MPA 578 (654)
Q Consensus 503 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~~~lp~~-~~~~~-~lp~~L~~L~L~~~~l~~~~-l~~ 578 (654)
....||.|..+++....-. ++..|.....+| .|.+.++-. |.+- +..++ .- +.|+.+++..|....+. +..
T Consensus 292 ~c~~lq~l~~s~~t~~~d~---~l~aLg~~~~~L~~l~l~~c~~-fsd~~ft~l~rn~-~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDE---VLWALGQHCHNLQVLELSGCQQ-FSDRGFTMLGRNC-PHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhhHhhhhcccCCCCCchH---HHHHHhcCCCceEEEeccccch-hhhhhhhhhhcCC-hhhhhhcccccceehhhhHhh
Confidence 3567788888777542221 455554443388 888877431 1110 00122 33 78888888888643332 222
Q ss_pred -cccCcccceEEEeecccCCCe----eEEcCCCCccccEEEEecCCCCcceeEc-CccccccceeeeecCcCCcc
Q 048216 579 -LEKLPVLQVLKLKQNSYSGRK----LACSSDGFPKLKVLHLKSMLWLEEWTMG-IRAMPKLECLIINPCAHLKG 647 (654)
Q Consensus 579 -l~~l~~L~~L~L~~~~~~~~~----l~~~~~~f~~L~~L~l~~~~~l~~l~~~-~~~~p~L~~L~i~~C~~L~~ 647 (654)
-.+.|.|+.|.|+++..+..+ +.....+...|+.|.+.+|+.+++-..+ ...+++|+++++.+|.....
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 236788999999855433322 1122245678889999998877654332 23578999999998876543
No 130
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.30 E-value=0.018 Score=59.84 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=38.3
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+++|+++.++.+..++..+ ..+.+-|+|..|+||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998765 3445799999999999999999883
No 131
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.017 Score=64.34 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=39.6
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999998663 346778999999999999999887
No 132
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0044 Score=68.28 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=49.8
Q ss_pred CCCCceechhhHHHHHHHHhcC----CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHH
Q 048216 99 KDRDTVGLDNRIEELLDLLIEG----PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQL 171 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 171 (654)
-+.+-+|.++.+++|++.|.-. .-+-.+++.||++|+|||+||+.|++ .....| +-+.++.--|..+|
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEI 392 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEI 392 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHh
Confidence 3567899999999999998532 34558999999999999999999998 555544 22334444454443
No 133
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.27 E-value=0.017 Score=62.80 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=47.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCc-c-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF-D-CRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILH 201 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 201 (654)
..-+-|+|..|+|||+||+++.+ .+.... + .+++++ ..++..++...+.... ...++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~~-------------~~~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT------SEKFLNDLVDSMKEGK-------------LNEFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHhccc-------------HHHHH
Confidence 44589999999999999999999 444433 3 344553 3456666666664221 11233
Q ss_pred HHHcCCceEEEeccccC
Q 048216 202 EYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 202 ~~L~~kr~LiVLDDvw~ 218 (654)
+..+.+.-+|++||+..
T Consensus 189 ~~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQF 205 (440)
T ss_pred HHHHhcCCEEEEechhh
Confidence 33334456899999964
No 134
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0089 Score=57.27 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+.+|||-|-+|.||||+|+.+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999998
No 135
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.20 E-value=0.018 Score=62.95 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=53.4
Q ss_pred ceechh--hHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcce--eEEEEeCCCCCHHHHHHHHHHH
Q 048216 103 TVGLDN--RIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDC--RAWVQESLPYDADQLLYDIIKL 178 (654)
Q Consensus 103 ~vGr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~i~~~ 178 (654)
++|... .......+....+....-+-|+|..|+|||+||+++.+ ++...+.. ++++ +..++..++...
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi------~~~~~~~~~~~~ 196 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYV------TSEKFTNDFVNA 196 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHH
Confidence 456433 23333333333233345688999999999999999999 55544422 3344 334445555555
Q ss_pred hCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccccC
Q 048216 179 VMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~ 218 (654)
+... ....+++.++ +--+|||||+..
T Consensus 197 ~~~~-------------~~~~~~~~~~-~~dlLiiDDi~~ 222 (450)
T PRK00149 197 LRNN-------------TMEEFKEKYR-SVDVLLIDDIQF 222 (450)
T ss_pred HHcC-------------cHHHHHHHHh-cCCEEEEehhhh
Confidence 5321 1122333444 344899999954
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=96.20 E-value=0.02 Score=58.44 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=32.2
Q ss_pred CceechhhHHHHHHHHh---c-------C---CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 102 DTVGLDNRIEELLDLLI---E-------G---PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+++|.+..+++|.++.. - + ......+.++|.+|.||||+|+.+++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 58888877776655431 1 1 11234578899999999999999977
No 137
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.18 E-value=0.012 Score=67.71 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=37.0
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.++||+++++++++.|.... ..-+-++|.+|+|||++|+.+++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998752 23345799999999999999887
No 138
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0043 Score=55.83 Aligned_cols=34 Identities=9% Similarity=0.238 Sum_probs=25.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCC-cceeEEE
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHY-FDCRAWV 160 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv 160 (654)
--|+|.||+|+||||+++.+.+ ..+.. |...-++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEE
Confidence 4589999999999999999998 44433 5543333
No 139
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.17 E-value=0.014 Score=56.99 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=37.7
Q ss_pred CCCCCceechhhHHHHHHHHh---cCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 98 FKDRDTVGLDNRIEELLDLLI---EGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.-++++|.+..++.|++=.. .+. ...-+-+||..|.|||++++++.+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHH
Confidence 456789999999998866443 332 345667899999999999999988
No 140
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.15 E-value=0.017 Score=62.29 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=44.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFD--CRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILH 201 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 201 (654)
...+-|+|..|+|||+||+++++ ++..... .++++ +..++...+...+.... ...+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi------~~~~~~~~~~~~~~~~~-------------~~~~~ 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYV------SSEKFTNDFVNALRNNK-------------MEEFK 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEE------EHHHHHHHHHHHHHcCC-------------HHHHH
Confidence 45688999999999999999999 4444332 23344 34455555655553221 11223
Q ss_pred HHHcCCceEEEeccccC
Q 048216 202 EYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 202 ~~L~~kr~LiVLDDvw~ 218 (654)
+.+++ .-+|||||+..
T Consensus 195 ~~~~~-~dlLiiDDi~~ 210 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQF 210 (405)
T ss_pred HHHHh-CCEEEEehhhh
Confidence 33332 34888999954
No 141
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.14 E-value=0.017 Score=55.37 Aligned_cols=81 Identities=12% Similarity=-0.028 Sum_probs=44.3
Q ss_pred EEEEEcCCCchHHHHHHHHHccccccC-Ccc---eeEEEEeCCCCCHHHHHHHHHHHhCCCC--CcccccccChHHHHHH
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSNYVKH-YFD---CRAWVQESLPYDADQLLYDIIKLVMPSR--RLSEIMKESSEMKKII 199 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~~~~ 199 (654)
||||.|.+|+||||+|+.+.. .... .+. ....+.....++....... -....... ......+.+. +.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~--l~~~ 75 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDL--LKED 75 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHH--HHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHH--HHHH
Confidence 799999999999999999987 3332 122 1233332222222222222 11111110 0124455556 7888
Q ss_pred HHHHHcCCceEE
Q 048216 200 LHEYVMTKRYLI 211 (654)
Q Consensus 200 l~~~L~~kr~Li 211 (654)
|+...+++.+-+
T Consensus 76 l~~L~~g~~i~~ 87 (194)
T PF00485_consen 76 LKALKNGGSIEI 87 (194)
T ss_dssp HHHHHTTSCEEE
T ss_pred HHHHhCCCcccc
Confidence 887777776544
No 142
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.023 Score=62.64 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=38.8
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999997763 345678999999999999998887
No 143
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.13 E-value=0.0086 Score=57.35 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC--CHHHHHHHHHHHhCCC
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY--DADQLLYDIIKLVMPS 182 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~ 182 (654)
++||.+||..|+||||.+-+++.. .+..=..+..|+. +.| ...+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~-D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISA-DTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE-STSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecC-CCCCccHHHHHHHHHHHhccc
Confidence 479999999999999976555542 2222234556664 333 4446677778887754
No 144
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.10 E-value=0.019 Score=56.60 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 121 PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 121 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.....+|||.|..|.|||||++.+.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999999887
No 145
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.10 E-value=0.015 Score=62.51 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=39.1
Q ss_pred CCceechhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCchHHHHHHHHHccccccCCc
Q 048216 101 RDTVGLDNRIEELLDLLIEG-----------PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF 154 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 154 (654)
.++.|.+..+++|.+.+... -...+-|.++|.+|.|||++|+++++ +....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 45778999999998877421 12345678999999999999999999 444443
No 146
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.09 E-value=0.022 Score=55.66 Aligned_cols=94 Identities=12% Similarity=0.170 Sum_probs=56.2
Q ss_pred ceec-hhhHHHHHHHHhcC-CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcc--eeEEEEeCCCCCHHHHHHHHHHH
Q 048216 103 TVGL-DNRIEELLDLLIEG-PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFD--CRAWVQESLPYDADQLLYDIIKL 178 (654)
Q Consensus 103 ~vGr-~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~ 178 (654)
++|- .+..-...+.+... +.....+-|+|..|+|||.|.+++++ ++..... .++++ +..++...+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHHHHH
Confidence 4463 33333444444443 33455678999999999999999999 4443322 23344 556777777776
Q ss_pred hCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccccC
Q 048216 179 VMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~ 218 (654)
+... ....+++.++ .-=+|++|||..
T Consensus 83 ~~~~-------------~~~~~~~~~~-~~DlL~iDDi~~ 108 (219)
T PF00308_consen 83 LRDG-------------EIEEFKDRLR-SADLLIIDDIQF 108 (219)
T ss_dssp HHTT-------------SHHHHHHHHC-TSSEEEEETGGG
T ss_pred HHcc-------------cchhhhhhhh-cCCEEEEecchh
Confidence 6432 1233555555 344788999944
No 147
>PRK08727 hypothetical protein; Validated
Probab=96.08 E-value=0.015 Score=57.46 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=27.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEE
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQ 161 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 161 (654)
...+.|+|..|+|||+||+++++ ..........+++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 35699999999999999999988 3333333455665
No 148
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.07 E-value=0.025 Score=60.42 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=37.5
Q ss_pred CCceechhhHHHHHHHHhc---C--------CCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDLLIE---G--------PPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.++.|.+..+++|.+.+.. . -...+-|.++|.+|.|||+||+++.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4588999999998887642 1 124577889999999999999999983
No 149
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.05 E-value=0.019 Score=62.38 Aligned_cols=76 Identities=12% Similarity=0.241 Sum_probs=46.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEY 203 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 203 (654)
..-+-|+|..|+|||+|++++.+ .+.......-.+++ +..++...+...+.... . ....+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv----~~~~f~~~~~~~l~~~~---------~--~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM----SGDEFARKAVDILQKTH---------K--EIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE----EHHHHHHHHHHHHHHhh---------h--HHHHHHHH
Confidence 45688999999999999999998 33322222222222 44567777777764311 1 22334444
Q ss_pred HcCCceEEEecccc
Q 048216 204 VMTKRYLIVLDNFE 217 (654)
Q Consensus 204 L~~kr~LiVLDDvw 217 (654)
++ +.-+||+||+-
T Consensus 204 ~~-~~dvLiIDDiq 216 (450)
T PRK14087 204 IC-QNDVLIIDDVQ 216 (450)
T ss_pred hc-cCCEEEEeccc
Confidence 44 34588899994
No 150
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.03 E-value=0.0081 Score=67.39 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=40.5
Q ss_pred CCCCceechhhHHHHHHHHhcC---CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIEG---PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++++|-++.++++..++... ....+++.|+|..|.||||+++.+.+
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999998764 23446899999999999999999998
No 151
>PTZ00301 uridine kinase; Provisional
Probab=96.02 E-value=0.0071 Score=58.54 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=23.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF 154 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 154 (654)
..+|||.|.+|.||||||+.+.+ ++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~--~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS--ELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH--HHHhhc
Confidence 47999999999999999999887 444434
No 152
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.99 E-value=0.03 Score=63.17 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=38.4
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-+++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999987663 345667999999999999998876
No 153
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.95 E-value=0.026 Score=51.90 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=29.3
Q ss_pred EEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCC
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYD 167 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 167 (654)
++.|+|.+|.||||+|+.+.. .....-..++++.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 478999999999999999987 3333335567777655543
No 154
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.014 Score=64.26 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=66.9
Q ss_pred CCCCCceechhhHHHHHHHHhc----CCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHH
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE----GPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLY 173 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 173 (654)
+-+++-+|+++-+++|.+.+.- ++.+-++++.+|++|||||++|+.|+. .....|- -+.|+.-.|+.+|--
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKG 482 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhcc
Confidence 3456789999999999999854 355779999999999999999999998 4444441 234455555544321
Q ss_pred HHHHHhCCCCCcccccccChHHHHHHHHHHH---cCCceEEEeccccC
Q 048216 174 DIIKLVMPSRRLSEIMKESSEMKKIILHEYV---MTKRYLIVLDNFEN 218 (654)
Q Consensus 174 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L---~~kr~LiVLDDvw~ 218 (654)
.. ..-... +-.++-++| +...-|+.+|.|..
T Consensus 483 --------HR----RTYVGA--MPGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 483 --------HR----RTYVGA--MPGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred --------cc----eeeecc--CChHHHHHHHhhCCCCceEEeehhhh
Confidence 11 111122 233344444 34567999999843
No 155
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.91 E-value=0.033 Score=54.48 Aligned_cols=51 Identities=20% Similarity=0.062 Sum_probs=34.5
Q ss_pred HHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCC
Q 048216 115 DLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYD 167 (654)
Q Consensus 115 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 167 (654)
++|..+=..-+++.|.|.+|+||||+|.++.. .....=..++|++....++
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 10 ELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred HHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH
Confidence 33433324568999999999999999988776 2322334567887655554
No 156
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.91 E-value=0.0055 Score=54.10 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~ 146 (654)
|+|.|..|+||||+|+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 157
>PRK08181 transposase; Validated
Probab=95.91 E-value=0.02 Score=57.61 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=42.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYV 204 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 204 (654)
.-+.++|..|+|||.||.++.+ ......-.+.+++ ..+++..+...... .. ....+. .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~~----------~~--~~~~l~-~l 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARRE----------LQ--LESAIA-KL 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHhC----------Cc--HHHHHH-HH
Confidence 4588999999999999999987 4433333445553 45556555433211 11 222222 22
Q ss_pred cCCceEEEeccc
Q 048216 205 MTKRYLIVLDNF 216 (654)
Q Consensus 205 ~~kr~LiVLDDv 216 (654)
.+-=|||+||+
T Consensus 166 -~~~dLLIIDDl 176 (269)
T PRK08181 166 -DKFDLLILDDL 176 (269)
T ss_pred -hcCCEEEEecc
Confidence 23459999998
No 158
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.90 E-value=0.033 Score=56.82 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=31.0
Q ss_pred CceechhhHHHHHHHHh---c-------C-C--CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 102 DTVGLDNRIEELLDLLI---E-------G-P--PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~---~-------~-~--~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++|.++.+++|.++.. . + . ....-+-++|.+|.||||+|+.+.+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 47888877777755432 1 1 0 1122577999999999999977766
No 159
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.90 E-value=0.0019 Score=62.84 Aligned_cols=240 Identities=16% Similarity=0.045 Sum_probs=123.3
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCC----cCCh-------hHHhcCCCceEEcCCCcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLK----SLPS-------SLLSSLLNLYTLDMPFSY 466 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~----~lP~-------~if~~L~~L~~L~L~~~~ 466 (654)
+..+..+.++++.........+...+.+-++|++-+++.- +.+ ++|+ .+ -++++|++.+|+.|-
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~----ftgr~kde~~~~L~~Ll~aL-lkcp~l~~v~LSDNA 103 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA----FTGRDKDELYSNLVMLLKAL-LKCPRLQKVDLSDNA 103 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh----hhcccHHHHHHHHHHHHHHH-hcCCcceeeeccccc
Confidence 4445555555555432112234445555666666666554 222 2222 22 445666666666662
Q ss_pred c-cccChh----hhccccccceecccccccc--CCc---------ccchhcCCCCCCCeEEEeccCCcccchhhhccccc
Q 048216 467 I-DHTADE----FWKVSKLRYLNFGAITLPA--HPG---------KYCNSLENLNFISALHHCYCTEDILGRLLVQILIL 530 (654)
Q Consensus 467 l-~~lP~~----i~~L~~L~~L~l~~l~~l~--~~~---------~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 530 (654)
+ .+.|.. |++-+.|.||.+++ .++. ... +...-..+.+.|++.....|..+..|....-..+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeec-CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 2 223332 34555666666433 0110 000 01123445678888877776554443221223345
Q ss_pred CCCCCe-EEEEeecCCCCCCcc-----hhhhcCCCCccEEEEEeeccCCCCccc----cccCcccceEEEeecccCCCee
Q 048216 531 SCLESL-KLANESKMPRRSNII-----LAEYQFPPSLTHLSFSNIELMDDPMPA----LEKLPVLQVLKLKQNSYSGRKL 600 (654)
Q Consensus 531 ~~~~~L-~L~l~~~~~~lp~~~-----~~~~~lp~~L~~L~L~~~~l~~~~l~~----l~~l~~L~~L~L~~~~~~~~~l 600 (654)
.+. +| .+.+..+.- -|.-+ ..+... .+|+.|+|.+|.++...-.. +...+.|+.|.+..|.......
T Consensus 183 sh~-~lk~vki~qNgI-rpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 183 SHE-NLKEVKIQQNGI-RPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred hhc-CceeEEeeecCc-CcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 555 77 777764321 12200 012245 89999999999875543332 3456778999998543322111
Q ss_pred -----EEcCCCCccccEEEEecCCCCcce-------eEcCccccccceeeeecCcCCcc
Q 048216 601 -----ACSSDGFPKLKVLHLKSMLWLEEW-------TMGIRAMPKLECLIINPCAHLKG 647 (654)
Q Consensus 601 -----~~~~~~f~~L~~L~l~~~~~l~~l-------~~~~~~~p~L~~L~i~~C~~L~~ 647 (654)
.+....+|+|..|.+.....-..+ .+..+++|-|..|.++++ .++.
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~E 317 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIKE 317 (388)
T ss_pred HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-cchh
Confidence 112234788888887763321111 134578999999988874 4443
No 160
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.039 Score=61.24 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=38.3
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999988753 335677999999999999999876
No 161
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.89 E-value=0.037 Score=62.18 Aligned_cols=46 Identities=24% Similarity=0.233 Sum_probs=39.3
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3579999999999999998752 346788999999999999998877
No 162
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.0031 Score=36.89 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=14.3
Q ss_pred CceEEcCCCccccccChhhhc
Q 048216 456 NLYTLDMPFSYIDHTADEFWK 476 (654)
Q Consensus 456 ~L~~L~L~~~~l~~lP~~i~~ 476 (654)
+|++|||++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 163
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.88 E-value=0.026 Score=55.84 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=34.8
Q ss_pred CCceech-hhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEe
Q 048216 101 RDTVGLD-NRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQE 162 (654)
Q Consensus 101 ~~~vGr~-~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 162 (654)
.-++|.. ..+..+.++.... ..+.+-|+|..|+|||+||+++++ .....-..+.++.+
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~ 81 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPL 81 (235)
T ss_pred ccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEH
Confidence 3344633 3344444443322 346788999999999999999998 33322223445554
No 164
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.042 Score=60.37 Aligned_cols=46 Identities=13% Similarity=0.012 Sum_probs=38.4
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|-+..+..+...+..+. -..-+-++|..|+||||+|+.+++
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999988776652 346788999999999999999987
No 165
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.85 E-value=0.0023 Score=55.92 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=38.4
Q ss_pred hhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceec
Q 048216 418 YCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNF 485 (654)
Q Consensus 418 ~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l 485 (654)
+++.+-.+++.++.|+|++| .|..+|..+ ..++.|+.|+++.|.+...|+-|..|.+|-+|+.
T Consensus 68 fp~kft~kf~t~t~lNl~~n----eisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 68 FPKKFTIKFPTATTLNLANN----EISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCHHHhhccchhhhhhcchh----hhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 33444445555666666666 566666665 6666666666666666666666666666666653
No 166
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.04 Score=61.35 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=38.9
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999997763 345678999999999999998876
No 167
>PRK06526 transposase; Provisional
Probab=95.84 E-value=0.016 Score=57.96 Aligned_cols=24 Identities=25% Similarity=0.090 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..-+.|+|.+|+|||+||.++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 346889999999999999999873
No 168
>PRK09183 transposase/IS protein; Provisional
Probab=95.81 E-value=0.024 Score=56.88 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+.|+|..|+|||+||.++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 5677999999999999999976
No 169
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.80 E-value=0.0078 Score=58.48 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+..+|+|.|.+|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999998
No 170
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.80 E-value=0.003 Score=55.24 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=67.2
Q ss_pred hhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchh
Q 048216 421 KICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNS 500 (654)
Q Consensus 421 ~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~ 500 (654)
..+.+..+|...+|++| .++.+|+.+-.+.+-+++|++.+|.+.++|.++..++.||.|+++. - .....|..
T Consensus 47 y~l~~~~el~~i~ls~N----~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~---N-~l~~~p~v 118 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDN----GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF---N-PLNAEPRV 118 (177)
T ss_pred HHHhCCceEEEEecccc----hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc---C-ccccchHH
Confidence 34566677888888888 7888888772344588888888888888888888888888888643 1 44566777
Q ss_pred cCCCCCCCeEEEeccCCccc
Q 048216 501 LENLNFISALHHCYCTEDIL 520 (654)
Q Consensus 501 l~~l~~L~~L~l~~~~~~~~ 520 (654)
+..|.+|-.|+...+....+
T Consensus 119 i~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred HHHHHhHHHhcCCCCccccC
Confidence 77777777777666654444
No 171
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.80 E-value=0.0075 Score=58.50 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+...+|+|+|..|+||||||+.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 172
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.79 E-value=0.02 Score=61.84 Aligned_cols=46 Identities=24% Similarity=0.183 Sum_probs=38.9
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-+..+..|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999988763 234678999999999999999987
No 173
>PRK08233 hypothetical protein; Provisional
Probab=95.78 E-value=0.0076 Score=56.97 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999987
No 174
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.77 E-value=0.028 Score=57.20 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|+|+|.+|+||||++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988776
No 175
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.035 Score=62.31 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=38.0
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-+++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578998888888999887763 346778999999999999998865
No 176
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.76 E-value=0.032 Score=62.78 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=38.6
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999887763 335578999999999999999887
No 177
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.76 E-value=0.023 Score=61.58 Aligned_cols=72 Identities=8% Similarity=0.163 Sum_probs=43.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEY 203 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 203 (654)
..-+-|+|..|+|||+||+++.+ .+...--.+++++ ...+...+...+... ....+++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~-------------~~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG-------------EMQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc-------------hHHHHHHH
Confidence 35678999999999999999998 4433222233443 344555555555321 11223433
Q ss_pred HcCCceEEEecccc
Q 048216 204 VMTKRYLIVLDNFE 217 (654)
Q Consensus 204 L~~kr~LiVLDDvw 217 (654)
+. +.-++++||+-
T Consensus 200 ~~-~~dvLiIDDiq 212 (445)
T PRK12422 200 YR-NVDALFIEDIE 212 (445)
T ss_pred cc-cCCEEEEcchh
Confidence 33 34478889983
No 178
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.74 E-value=0.025 Score=66.12 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=37.8
Q ss_pred CCceechhhHHHHHHHHhc----CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIE----GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|.++.+++|.+++.. ......++.++|.+|+||||+|+.+.+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999887642 223445899999999999999999998
No 179
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.052 Score=59.90 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=56.2
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC--CHHHHHHHHHH
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY--DADQLLYDIIK 177 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~ 177 (654)
+.+++--...+++..+.....--...-|-|.|..|+|||+||+++++... +++.-.+..|+.|.-- ....+++.
T Consensus 407 e~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~--- 482 (952)
T KOG0735|consen 407 EHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF--- 482 (952)
T ss_pred CCceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH---
Confidence 34455444444444444333322345688999999999999999999433 3333333444443221 12222221
Q ss_pred HhCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccc
Q 048216 178 LVMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDv 216 (654)
+...+.+.+....-+|||||+
T Consensus 483 ------------------l~~vfse~~~~~PSiIvLDdl 503 (952)
T KOG0735|consen 483 ------------------LNNVFSEALWYAPSIIVLDDL 503 (952)
T ss_pred ------------------HHHHHHHHHhhCCcEEEEcch
Confidence 445556667778899999999
No 180
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.048 Score=57.98 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=39.2
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|.+..++.+.+.+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999997752 346888999999999999999877
No 181
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.046 Score=59.56 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=37.9
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 3579999999988888887652 335788999999999999998875
No 182
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.69 E-value=0.035 Score=61.54 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=37.0
Q ss_pred CCCCCCceechhhHHHHHHHHh---c-------CCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 97 SFKDRDTVGLDNRIEELLDLLI---E-------GPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 97 ~~~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+.-.+++|.++.++++.+++. . +....+-+-++|.+|.|||+||+++.+.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3445578998888777766553 1 1123345789999999999999999984
No 183
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.68 E-value=0.013 Score=59.02 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=33.7
Q ss_pred CceechhhHHHHHHHHhc---------C----CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 102 DTVGLDNRIEELLDLLIE---------G----PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~---------~----~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+++|.+..++.|.+.... . .+...-+.++|.+|.||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 588988888777544311 1 23456678999999999999999987
No 184
>PRK06547 hypothetical protein; Provisional
Probab=95.67 E-value=0.015 Score=54.40 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
....+|+|.|..|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999873
No 185
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.60 E-value=0.042 Score=57.06 Aligned_cols=103 Identities=11% Similarity=0.114 Sum_probs=59.4
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCc----ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---
Q 048216 113 LLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF----DCRAWVQESLPYDADQLLYDIIKLVMPSRRL--- 185 (654)
Q Consensus 113 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--- 185 (654)
+-++|..+=..-.++-|+|.+|+|||++|..+.-.......+ ..++||+....|++.++.+ +++.++.....
T Consensus 91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~ 169 (317)
T PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLD 169 (317)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhc
Confidence 334444443456899999999999999997776432221111 4789999988899887654 34444332110
Q ss_pred ----ccccccCh-HHHHHHHHHHHcC-Cc-eEEEeccc
Q 048216 186 ----SEIMKESS-EMKKIILHEYVMT-KR-YLIVLDNF 216 (654)
Q Consensus 186 ----~~~~~~~~-~~~~~~l~~~L~~-kr-~LiVLDDv 216 (654)
....+.+. ..+...+...+.. .+ -|||+|-+
T Consensus 170 ~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSi 207 (317)
T PRK04301 170 NIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSL 207 (317)
T ss_pred cEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECc
Confidence 00001011 0134455555544 33 48999987
No 186
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.60 E-value=0.019 Score=57.96 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=49.3
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccc
Q 048216 109 RIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEI 188 (654)
Q Consensus 109 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 188 (654)
....+++.+.... +-+-++|..|+|||++++...+.-. ...| ...-++.|..-....+++.|-..+..... ..
T Consensus 21 r~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~--~~ 93 (272)
T PF12775_consen 21 RYSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG--RV 93 (272)
T ss_dssp HHHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT--EE
T ss_pred HHHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC--CC
Confidence 3456667676652 4568999999999999998886311 1111 12334555544444444332222221111 11
Q ss_pred cccChHHHHHHHHHHHcCCceEEEeccc
Q 048216 189 MKESSEMKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 189 ~~~~~~~~~~~l~~~L~~kr~LiVLDDv 216 (654)
.... .+|+.++.+||+
T Consensus 94 ~gP~------------~~k~lv~fiDDl 109 (272)
T PF12775_consen 94 YGPP------------GGKKLVLFIDDL 109 (272)
T ss_dssp EEEE------------SSSEEEEEEETT
T ss_pred CCCC------------CCcEEEEEeccc
Confidence 1111 378999999998
No 187
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.59 E-value=0.051 Score=53.65 Aligned_cols=89 Identities=8% Similarity=0.069 Sum_probs=53.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCC-----CCCHHHHHHHHHHHhCCCCCc----ccccccCh
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESL-----PYDADQLLYDIIKLVMPSRRL----SEIMKESS 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~ 193 (654)
.-.++||||-.|.||||+|+.+.. -.... .+.++..-.+ .....+-..++++.++..... ..+.+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~--L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG--LEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc--CcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 457899999999999999999997 22222 2233322111 222334456677776644321 12223333
Q ss_pred HHHHH-HHHHHHcCCceEEEeccc
Q 048216 194 EMKKI-ILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 194 ~~~~~-~l~~~L~~kr~LiVLDDv 216 (654)
.++ .|.+.|.-+-=|||.|.-
T Consensus 115 --rQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 115 --RQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred --hhhHHHHHHHhhCCcEEEecCc
Confidence 443 366778888899999985
No 188
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.59 E-value=0.045 Score=58.34 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCC-HHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYD-ADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-..++|+|..|+|||||++.+.+.. ..+..+.+-+.+... +.++.++++..-.....- ....+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34789999999999999999998732 225666676776643 445666654432111110 11111111
Q ss_pred HHHHHHHHHHH--cCCceEEEecccc
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
...+-.+.+++ +++.+|+++||+-
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 00122244444 5899999999993
No 189
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.58 E-value=0.06 Score=55.52 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=44.9
Q ss_pred HHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 048216 115 DLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKH----YFDCRAWVQESLPYDADQLLYDIIKLVMP 181 (654)
Q Consensus 115 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 181 (654)
++|..+=..-+++-|+|.+|+|||+|+..++-...... .=..++||+-...|++.++.+ +++.++.
T Consensus 87 ~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 87 GILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred HHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 34544434568999999999999999976553222211 113688999988899988764 4566554
No 190
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.57 E-value=0.033 Score=54.48 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|||.|..|+||||+|+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 191
>PRK06921 hypothetical protein; Provisional
Probab=95.55 E-value=0.033 Score=56.12 Aligned_cols=37 Identities=19% Similarity=0.083 Sum_probs=27.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCC-cceeEEEE
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY-FDCRAWVQ 161 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~ 161 (654)
....+.++|..|+|||+||.++.+ .+... -..+++++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEE
Confidence 356789999999999999999999 44443 23455665
No 192
>PRK05642 DNA replication initiation factor; Validated
Probab=95.55 E-value=0.051 Score=53.74 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEE
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQ 161 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 161 (654)
...+.|+|..|+|||.||+++.+ .....-..+++++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~ 80 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLP 80 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEee
Confidence 46789999999999999999987 3332223455665
No 193
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.54 E-value=0.046 Score=63.51 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=39.8
Q ss_pred CCCceechhhHHHHHHHHhc----CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIE----GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.+.+|.++.+++|+++|.. +.....++.++|.+|+||||+|+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999998863 123456899999999999999999997
No 194
>CHL00176 ftsH cell division protein; Validated
Probab=95.54 E-value=0.028 Score=63.50 Aligned_cols=96 Identities=13% Similarity=0.183 Sum_probs=57.1
Q ss_pred CCCCCceechhhHHHHHHHHh---cC-------CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCC
Q 048216 98 FKDRDTVGLDNRIEELLDLLI---EG-------PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYD 167 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 167 (654)
+.-.++.|.++.++++.+.+. .. ....+-|-++|.+|.|||+||+++++.. .. -|+.++.
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~--- 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISG--- 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccH---
Confidence 344578898887777766542 21 1224568899999999999999999832 21 2333321
Q ss_pred HHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHcCCceEEEecccc
Q 048216 168 ADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFE 217 (654)
Q Consensus 168 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw 217 (654)
.++.. ...+. .... +...+........++|++||+.
T Consensus 250 -s~f~~----~~~g~-------~~~~--vr~lF~~A~~~~P~ILfIDEID 285 (638)
T CHL00176 250 -SEFVE----MFVGV-------GAAR--VRDLFKKAKENSPCIVFIDEID 285 (638)
T ss_pred -HHHHH----Hhhhh-------hHHH--HHHHHHHHhcCCCcEEEEecch
Confidence 11111 11000 1112 4445555556788999999993
No 195
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.52 E-value=0.047 Score=63.48 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=36.9
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG-------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|-+..++.|.+.+... +....++-++|+.|+|||+||+.+.+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 45889888889988887642 12345688999999999999999988
No 196
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.52 E-value=0.038 Score=58.33 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=49.4
Q ss_pred CCceechhhHHHHHHHHhcC------------CCCcEEEEEEcCCCchHHHHHHHHHccccccCCc---ceeEEEEeC-C
Q 048216 101 RDTVGLDNRIEELLDLLIEG------------PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF---DCRAWVQES-L 164 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs-~ 164 (654)
..++|.++.++.+.-.+... +...+-|-++|.+|+||||+|+++.. .....| +..-++..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 35889998888887666531 12346788999999999999999998 443333 332232221 1
Q ss_pred CCCHHHHHHHHHHHh
Q 048216 165 PYDADQLLYDIIKLV 179 (654)
Q Consensus 165 ~~~~~~~~~~i~~~l 179 (654)
..++..+++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666555443
No 197
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.51 E-value=0.0099 Score=46.34 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998873
No 198
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.51 E-value=0.032 Score=55.92 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=58.5
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCc----ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc--
Q 048216 112 ELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF----DCRAWVQESLPYDADQLLYDIIKLVMPSRRL-- 185 (654)
Q Consensus 112 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-- 185 (654)
.|-++|..+=..-.+.=|+|.+|+|||.||-.++-...+.... ..++||+-...|...++.+ |++........
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~l 104 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEIL 104 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhccccccchhh
Confidence 3334443332345799999999999999997766433332222 3588999888999888754 55554332110
Q ss_pred -----ccccccCh-HHHHHHHHHHH-cCCceEEEeccc
Q 048216 186 -----SEIMKESS-EMKKIILHEYV-MTKRYLIVLDNF 216 (654)
Q Consensus 186 -----~~~~~~~~-~~~~~~l~~~L-~~kr~LiVLDDv 216 (654)
....+.++ ..+...+...+ .++=-|||+|.+
T Consensus 105 ~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 105 DNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred hceeeeecCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence 01112222 00223333334 345559999997
No 199
>PRK06762 hypothetical protein; Provisional
Probab=95.49 E-value=0.011 Score=55.05 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 200
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.47 E-value=0.021 Score=53.85 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..-+.|+|..|+|||.||.++.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~ 70 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE 70 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH
Confidence 456999999999999999999873
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.45 E-value=0.064 Score=55.18 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=53.8
Q ss_pred echhhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 048216 105 GLDNRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPS 182 (654)
Q Consensus 105 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 182 (654)
++....+...+++..- +...+-+-|+|..|+|||.||.++++. ....=-.+.++++ ..++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHhcC
Confidence 4555555556666532 123467889999999999999999994 3332223456654 35556655554221
Q ss_pred CCcccccccChHHHHHHHHHHHcCCceEEEeccc
Q 048216 183 RRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDv 216 (654)
. ....+.. + .+-=||||||+
T Consensus 207 ----------~--~~~~l~~-l-~~~dlLiIDDi 226 (306)
T PRK08939 207 ----------S--VKEKIDA-V-KEAPVLMLDDI 226 (306)
T ss_pred ----------c--HHHHHHH-h-cCCCEEEEecC
Confidence 1 2222322 2 35568999998
No 202
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.44 E-value=0.04 Score=56.72 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=52.1
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---ccccccChHHHHH
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL---SEIMKESSEMKKI 198 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~ 198 (654)
+.-+++-|+|.+|+||||||..++- .....-..++||+....+++. .+++++..... ....+.++ ...
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq--~l~ 123 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQ--ALE 123 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHH--HHH
Confidence 4568999999999999999987665 233334567888877766653 23333322110 01112223 444
Q ss_pred HHHHHHc-CCceEEEeccc
Q 048216 199 ILHEYVM-TKRYLIVLDNF 216 (654)
Q Consensus 199 ~l~~~L~-~kr~LiVLDDv 216 (654)
.+...++ +.--+||+|-|
T Consensus 124 i~~~li~s~~~~lIVIDSv 142 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHHHhccCCCEEEEcch
Confidence 4444443 45668999997
No 203
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.44 E-value=0.074 Score=55.40 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=45.2
Q ss_pred HHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 048216 116 LLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKH----YFDCRAWVQESLPYDADQLLYDIIKLVMPS 182 (654)
Q Consensus 116 ~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 182 (654)
+|..+=..-+++-|+|.+|+|||+|+..++-...... .-..++||+-...|++.++.+ +++.++..
T Consensus 118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3443324568899999999999999977653222211 124678999999999988765 45555543
No 204
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.42 E-value=0.07 Score=55.17 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=44.5
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 048216 113 LLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKH----YFDCRAWVQESLPYDADQLLYDIIKLVMP 181 (654)
Q Consensus 113 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 181 (654)
+-++|..+=..-.++.|+|.+|+||||||..++-...... .-..++|++-...|...++ ..+++.++.
T Consensus 85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3344544434578999999999999999988765222211 1135689998888888774 334444443
No 205
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.42 E-value=0.028 Score=65.50 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=38.5
Q ss_pred CCCCCceechhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIEG-----------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.-+++.|.++.+++|.+++... -...+-|.++|.+|.||||||+++++
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 34456889999999998887421 02346688999999999999999998
No 206
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.41 E-value=0.0016 Score=66.96 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=6.5
Q ss_pred CCCCCeEEEecc
Q 048216 504 LNFISALHHCYC 515 (654)
Q Consensus 504 l~~L~~L~l~~~ 515 (654)
..+|+.|.++.|
T Consensus 319 ~~~L~~l~l~~c 330 (483)
T KOG4341|consen 319 CHNLQVLELSGC 330 (483)
T ss_pred CCceEEEecccc
Confidence 345555555555
No 207
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.40 E-value=0.065 Score=55.53 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=43.7
Q ss_pred HHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCC----cceeEEEEeCCCCCHHHHHHHHHHHhC
Q 048216 115 DLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY----FDCRAWVQESLPYDADQLLYDIIKLVM 180 (654)
Q Consensus 115 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 180 (654)
++|..+=..-+++-|+|.+|+||||+|.+++-....... =..++||+....|+..++.+ +++.++
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 444433245689999999999999999877653222111 12789999988898887653 344443
No 208
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.40 E-value=0.063 Score=63.24 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=37.2
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG-------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|-+..++.|...+... +....++.++|..|+|||++|+++.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45889999999998888632 12235788999999999999999987
No 209
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.39 E-value=0.05 Score=58.30 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=51.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-ccccccCh------HH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL-SEIMKESS------EM 195 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~------~~ 195 (654)
.-..++|+|..|+|||||++.+..... ....+++..--+.-++.++....+.......-. +...+... ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 346899999999999999999887322 223444443334446666555544443211100 01111111 00
Q ss_pred HHHHHHHHH--cCCceEEEeccccC
Q 048216 196 KKIILHEYV--MTKRYLIVLDNFEN 218 (654)
Q Consensus 196 ~~~~l~~~L--~~kr~LiVLDDvw~ 218 (654)
..-.+.+++ +++.+|+++||+-.
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHH
Confidence 122233333 48999999999933
No 210
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.078 Score=56.52 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=38.1
Q ss_pred CCceechhhHHHHHHHHhcCCC--------CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPP--------QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++++|-+..++.|.+++..+.. -..-+-++|+.|+||||+|+.+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999986521 346688999999999999998866
No 211
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.32 E-value=0.048 Score=51.13 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++.++|++|+||||+++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999988876
No 212
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.074 Score=59.43 Aligned_cols=46 Identities=22% Similarity=0.086 Sum_probs=38.9
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999997752 345678999999999999999887
No 213
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.27 E-value=0.063 Score=63.24 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=36.8
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG-------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|-++.++.|.+.+... +....++-++|+.|+|||+||+.+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 56899999999998888632 12235667899999999999999887
No 214
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.06 Score=58.42 Aligned_cols=98 Identities=21% Similarity=0.255 Sum_probs=64.0
Q ss_pred CCCCCCceechhhHHHHHHHHhcC--C--------CCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC
Q 048216 97 SFKDRDTVGLDNRIEELLDLLIEG--P--------PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY 166 (654)
Q Consensus 97 ~~~~~~~vGr~~~~~~l~~~L~~~--~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 166 (654)
.+.-.++=|.+..+.++.+++..- . ...+=|-++|++|.|||.||+++.+.-.| - ++.++.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--P-----f~~isAp- 257 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--P-----FLSISAP- 257 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--c-----eEeecch-
Confidence 344567789999999998887642 1 23566789999999999999999994322 2 2333322
Q ss_pred CHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccccC
Q 048216 167 DADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 167 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~ 218 (654)
+|+..+.+ .+++. +.+.+.+.-..-.+++.+||+.-
T Consensus 258 -------eivSGvSG-------ESEkk--iRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 -------EIVSGVSG-------ESEKK--IRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred -------hhhcccCc-------ccHHH--HHHHHHHHhccCCeEEEeecccc
Confidence 23333322 23334 55555556667789999999843
No 215
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.26 E-value=0.076 Score=55.10 Aligned_cols=35 Identities=9% Similarity=-0.037 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEE
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQ 161 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 161 (654)
.-+.++|..|+|||.||.++.+ .+...--.+++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEE
Confidence 6799999999999999999998 3333222445554
No 216
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.24 E-value=0.055 Score=54.13 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=46.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHE 202 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 202 (654)
+..-+.++|.+|+|||.||.++.+ ++...=-.+.++ ...++..++....... . ...+|.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~------~~~el~~~Lk~~~~~~----------~--~~~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFI------TAPDLLSKLKAAFDEG----------R--LEEKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEE------EHHHHHHHHHHHHhcC----------c--hHHHHHH
Confidence 456788999999999999999999 444321233455 4556666666655431 1 3333444
Q ss_pred HHcCCceEEEeccc
Q 048216 203 YVMTKRYLIVLDNF 216 (654)
Q Consensus 203 ~L~~kr~LiVLDDv 216 (654)
.++ +-=|+||||+
T Consensus 164 ~l~-~~dlLIiDDl 176 (254)
T COG1484 164 ELK-KVDLLIIDDI 176 (254)
T ss_pred Hhh-cCCEEEEecc
Confidence 332 2338899998
No 217
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.071 Score=56.02 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCc--ceeEEEEeCCCC--CHHHHHHHHHHHhCCCCCcccccccChHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF--DCRAWVQESLPY--DADQLLYDIIKLVMPSRRLSEIMKESSEMKKI 198 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 198 (654)
.-.+++++|..|+||||++.++.. +....+ ..+..++ .+.+ ...+-++...+.++.... ...+..+ +..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~--l~~ 208 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH--AVKDGGD--LQL 208 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceE--ecCCccc--HHH
Confidence 357999999999999999988877 322223 2344554 3333 344555555566554332 2222233 443
Q ss_pred HHHHHHcCCceEEEeccc
Q 048216 199 ILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 199 ~l~~~L~~kr~LiVLDDv 216 (654)
.+. .+.++ =+|++|..
T Consensus 209 ~l~-~l~~~-DlVLIDTa 224 (374)
T PRK14722 209 ALA-ELRNK-HMVLIDTI 224 (374)
T ss_pred HHH-HhcCC-CEEEEcCC
Confidence 333 34555 45568886
No 218
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.23 E-value=0.015 Score=52.56 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
||-++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999986
No 219
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.21 E-value=0.11 Score=54.82 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=52.5
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCccccccc
Q 048216 112 ELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKE 191 (654)
Q Consensus 112 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 191 (654)
++-+.|..+=..-.++.|.|.+|+|||||+.++.. .....-..+++++..+. ...+. .-++.++...........
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e 144 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAE 144 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEcc
Confidence 34444444323457999999999999999988876 33333345667765433 33332 223445433221111111
Q ss_pred ChHHHHHHHHHHH-cCCceEEEeccc
Q 048216 192 SSEMKKIILHEYV-MTKRYLIVLDNF 216 (654)
Q Consensus 192 ~~~~~~~~l~~~L-~~kr~LiVLDDv 216 (654)
.. + ..+.+.+ ..+--+||+|.+
T Consensus 145 ~~--l-e~I~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 145 TN--L-EDILASIEELKPDLVIIDSI 167 (372)
T ss_pred Cc--H-HHHHHHHHhcCCcEEEEcch
Confidence 12 2 2222333 346668999997
No 220
>PRK10867 signal recognition particle protein; Provisional
Probab=95.21 E-value=0.086 Score=56.67 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.++|.+|+||||.|..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999997755554
No 221
>PRK03839 putative kinase; Provisional
Probab=95.20 E-value=0.014 Score=55.16 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.|.|+|++|+||||+|+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999983
No 222
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.20 E-value=0.078 Score=56.78 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=53.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCC-HHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYD-ADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-..++|+|..|+|||||++.+.+... -+..+.+-+.+... +.++..+.+..-+....- ....+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 457899999999999999999998332 24556666666543 445555444432211110 11111111
Q ss_pred HHHHHHHHHHH--cCCceEEEecccc
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
....-.+.+++ ++|.+|+++||+=
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 00122244444 5899999999993
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.092 Score=55.08 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|+++|.+|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999988875
No 224
>PRK04040 adenylate kinase; Provisional
Probab=95.19 E-value=0.015 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 225
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.19 E-value=0.038 Score=53.58 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=51.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh--------
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS-------- 193 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~-------- 193 (654)
.-++|.|..|+|||+|++.+.++.. =+..+.+.+.+.. .+.++.+++...-..+..- ....+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5789999999999999999988431 2334777777663 5556666664331111100 01111000
Q ss_pred --HHHHHHHHHHHcCCceEEEeccc
Q 048216 194 --EMKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 194 --~~~~~~l~~~L~~kr~LiVLDDv 216 (654)
-..++.++. ++|.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 003344444 699999999998
No 226
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.016 Score=54.86 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 578999999999999999999984
No 227
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.13 E-value=0.092 Score=56.40 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.++|.+|+||||.|..+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999766655
No 228
>PRK09354 recA recombinase A; Provisional
Probab=95.13 E-value=0.059 Score=55.97 Aligned_cols=93 Identities=19% Similarity=0.083 Sum_probs=55.7
Q ss_pred HHHh-cCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---ccccc
Q 048216 115 DLLI-EGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL---SEIMK 190 (654)
Q Consensus 115 ~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~ 190 (654)
.+|- .+=+.-+++-|+|..|+||||||-++.. .....=..++||..-..++.. .+++++..... ....+
T Consensus 50 ~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~ 122 (349)
T PRK09354 50 IALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDT 122 (349)
T ss_pred HHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCC
Confidence 4444 3334568999999999999999987665 233334567898877777753 33444332110 01112
Q ss_pred cChHHHHHHHHHHHc-CCceEEEeccc
Q 048216 191 ESSEMKKIILHEYVM-TKRYLIVLDNF 216 (654)
Q Consensus 191 ~~~~~~~~~l~~~L~-~kr~LiVLDDv 216 (654)
.++ ....+...++ ++--+||+|-|
T Consensus 123 ~Eq--~l~i~~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 123 GEQ--ALEIADTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHH--HHHHHHHHhhcCCCCEEEEeCh
Confidence 223 4444444443 45668999998
No 229
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.13 E-value=0.033 Score=49.42 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 108 NRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 108 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
++.+++-+.|...=..-.+|.+.|.-|.||||+++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4455555555443123468999999999999999999984
No 230
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.12 E-value=0.017 Score=54.95 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+..+|.|+|.+|+||||+|+.+.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 231
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.12 E-value=0.05 Score=57.54 Aligned_cols=77 Identities=13% Similarity=0.254 Sum_probs=49.4
Q ss_pred CCceechhhHHHHHHHHhcC------------CCCcEEEEEEcCCCchHHHHHHHHHccccccCCc---ceeEEEEeC-C
Q 048216 101 RDTVGLDNRIEELLDLLIEG------------PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF---DCRAWVQES-L 164 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs-~ 164 (654)
..++|.++.++.+..++... +....-|-++|+.|+||||||+.+.. .....| |..-|...+ .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCcc
Confidence 45899999999998888541 11246789999999999999999988 333333 333232211 1
Q ss_pred CCCHHHHHHHHHHHh
Q 048216 165 PYDADQLLYDIIKLV 179 (654)
Q Consensus 165 ~~~~~~~~~~i~~~l 179 (654)
..+...+.+.+....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235555555555444
No 232
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.11 E-value=0.029 Score=55.21 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=29.4
Q ss_pred eechhhH-HHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 104 VGLDNRI-EELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 104 vGr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.|..... ..+.++.. .....+.+.|+|..|+|||+||+++++.
T Consensus 22 ~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 22 AGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4554443 34444433 2234567889999999999999999983
No 233
>PRK08149 ATP synthase SpaL; Validated
Probab=95.10 E-value=0.075 Score=56.80 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=52.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP-YDADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-..++|+|..|+|||||++.+.+... -+..+...+... -++.++..+........... ....+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346899999999999999999998332 233333444433 45666666666543322110 01111111
Q ss_pred HHHHHHHHHHH--cCCceEEEecccc
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
......+.+++ ++|.+||++||+=
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchH
Confidence 00222233443 5899999999993
No 234
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.09 E-value=0.061 Score=58.02 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=56.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-.-++|.|-.|+|||||+..+.+... +.+-+.++++-+.+.. .+.++..++...-.....- ....+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 346799999999999999988777322 2355778888777654 4556666665432111110 01111111
Q ss_pred HHHHHHHHHHH---cCCceEEEeccc
Q 048216 194 EMKKIILHEYV---MTKRYLIVLDNF 216 (654)
Q Consensus 194 ~~~~~~l~~~L---~~kr~LiVLDDv 216 (654)
....-.+.+++ ++|.+|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 00233455555 389999999999
No 235
>PRK05439 pantothenate kinase; Provisional
Probab=95.08 E-value=0.092 Score=53.78 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=46.0
Q ss_pred CCCcEEEEEEcCCCchHHHHHHHHHccccccCCc--ceeEEEEeCCCCCHHHHHHHHHHHhCC-CCCcccccccChHHHH
Q 048216 121 PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF--DCRAWVQESLPYDADQLLYDIIKLVMP-SRRLSEIMKESSEMKK 197 (654)
Q Consensus 121 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~ 197 (654)
.....+|||.|.+|+||||+|+.+.. ...... ..+.-+++..-+...+.+.. ..+.. ... .+..+.+. +.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~-Pes~D~~~--l~ 155 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGF-PESYDMRA--LL 155 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCCC-cccccHHH--HH
Confidence 35678999999999999999998876 333221 22334444443333333221 11111 111 23445555 77
Q ss_pred HHHHHHHcCCc
Q 048216 198 IILHEYVMTKR 208 (654)
Q Consensus 198 ~~l~~~L~~kr 208 (654)
..|.....|+.
T Consensus 156 ~~L~~Lk~G~~ 166 (311)
T PRK05439 156 RFLSDVKSGKP 166 (311)
T ss_pred HHHHHHHcCCC
Confidence 77777767765
No 236
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.07 E-value=0.068 Score=53.42 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccc--cCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh-----
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYV--KHYFDCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS----- 193 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~----- 193 (654)
-+-++|.|-.|+|||||+..+.++..+ +..-+.++++-+.+.. .+.++..++...=.....- ....++..
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 467899999999999999988875431 1234678888887765 5556666665532111110 11111111
Q ss_pred -HHHHHHHHHHH---cCCceEEEeccc
Q 048216 194 -EMKKIILHEYV---MTKRYLIVLDNF 216 (654)
Q Consensus 194 -~~~~~~l~~~L---~~kr~LiVLDDv 216 (654)
....-.+.+++ ++|++|+|+||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 00223345554 378999999998
No 237
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.05 E-value=0.026 Score=60.81 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=36.9
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++||++.++.+...+..+ .-|-|.|.+|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHH
Confidence 35889999999999998876 3477999999999999999998
No 238
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.04 E-value=0.086 Score=53.58 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=43.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHccccccCCc-c-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHH
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF-D-CRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKII 199 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 199 (654)
....+|||.|..|+||||+|+.+.. ...... + .+..++...-+...+.+...- .+..... .+..+.+. +...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~-P~s~D~~~--l~~~ 133 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGF-PESYDMHR--LVKF 133 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcC-CccccCC-ChhccHHH--HHHH
Confidence 4678999999999999999987755 222111 1 233444433333333333210 0111111 24445555 6666
Q ss_pred HHHHHcCCc
Q 048216 200 LHEYVMTKR 208 (654)
Q Consensus 200 l~~~L~~kr 208 (654)
+...-.++.
T Consensus 134 L~~Lk~g~~ 142 (290)
T TIGR00554 134 LSDLKSGKP 142 (290)
T ss_pred HHHHHCCCC
Confidence 666666553
No 239
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.00 E-value=0.12 Score=53.91 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=46.1
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCC----cceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 048216 113 LLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY----FDCRAWVQESLPYDADQLLYDIIKLVMP 181 (654)
Q Consensus 113 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 181 (654)
|-++|..+=..-.++-|+|.+|+|||+||..++-....... =..++||+-...|.+.++. +|++.++.
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 33444444345688999999999999999877642222111 1368999999999988864 45665544
No 240
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.98 E-value=0.064 Score=51.74 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
....|+|+|.+|+|||||.+.+.++.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 35689999999999999999998854
No 241
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.042 Score=62.07 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=38.7
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-+..++.|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999988887653 345678999999999999999987
No 242
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.98 E-value=0.036 Score=60.38 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccC-CcceeEEEE-eCCCC-CHHHHHHHHHHHh---CCCCCcccccccChHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKH-YFDCRAWVQ-ESLPY-DADQLLYDIIKLV---MPSRRLSEIMKESSEMKK 197 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~-vs~~~-~~~~~~~~i~~~l---~~~~~~~~~~~~~~~~~~ 197 (654)
-.-.+|+|..|+|||||++.|.+ .+.. +=++.++|. |.+.. .+.++.+.+-..+ +....+........ +.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~--~a 491 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAE--LA 491 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHH--HH
Confidence 46788999999999999999998 4432 334444443 44433 3334444331111 11111001111111 33
Q ss_pred HHHHHHH--cCCceEEEeccc
Q 048216 198 IILHEYV--MTKRYLIVLDNF 216 (654)
Q Consensus 198 ~~l~~~L--~~kr~LiVLDDv 216 (654)
-.+.+++ .++.+||++|++
T Consensus 492 i~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCc
Confidence 3344555 689999999999
No 243
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.12 Score=51.95 Aligned_cols=95 Identities=15% Similarity=0.070 Sum_probs=58.8
Q ss_pred HhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHH---HhCCCCCcccccccCh
Q 048216 117 LIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIK---LVMPSRRLSEIMKESS 193 (654)
Q Consensus 117 L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~---~l~~~~~~~~~~~~~~ 193 (654)
|-.+=+.-+++=|+|..|.||||+|-+++- .++..-..++||+--..+++..+..---. .+..... ........
T Consensus 53 LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~-~~~e~q~~ 129 (279)
T COG0468 53 LGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQP-DTGEQQLE 129 (279)
T ss_pred hcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecC-CCHHHHHH
Confidence 333335679999999999999999977765 34444458899999888998875433222 2222211 11111112
Q ss_pred HHHHHHHHHHHcCCceEEEeccc
Q 048216 194 EMKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 194 ~~~~~~l~~~L~~kr~LiVLDDv 216 (654)
+...+......+=-|||+|-|
T Consensus 130 --i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 130 --IAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred --HHHHHHHhccCCCCEEEEecC
Confidence 344444444445679999987
No 244
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.96 E-value=0.015 Score=55.89 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|||.|..|+||||||+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 245
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.96 E-value=0.13 Score=55.32 Aligned_cols=56 Identities=18% Similarity=0.091 Sum_probs=34.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCH--HHHHHHHHHHhCC
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDA--DQLLYDIIKLVMP 181 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~ 181 (654)
...+|.++|.+|+||||.|..++. ..+..-..++-|+ .+.+.. .+.++.+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~-~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVA-ADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEec-CCCCCHHHHHHHHHHHHHcCC
Confidence 578999999999999999988876 3332211222333 233433 3445566666544
No 246
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.90 E-value=0.035 Score=52.07 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=57.9
Q ss_pred CCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCC-CCcccccc
Q 048216 505 NFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMD-DPMPALEK 581 (654)
Q Consensus 505 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~-~~l~~l~~ 581 (654)
.+...++++.|+...+ ..+..++ .| .|.+.. .+.++-. .+..+-++|..|.|.+|++.. .++..+..
T Consensus 42 d~~d~iDLtdNdl~~l------~~lp~l~-rL~tLll~nNrIt~I~p---~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL------DNLPHLP-RLHTLLLNNNRITRIDP---DLDTFLPNLKTLILTNNSIQELGDLDPLAS 111 (233)
T ss_pred cccceecccccchhhc------ccCCCcc-ccceEEecCCcceeecc---chhhhccccceEEecCcchhhhhhcchhcc
Confidence 3555666666643322 3455555 77 777765 3334433 344322778888888776532 34556677
Q ss_pred CcccceEEEeecccCCCee--EEcCCCCccccEEEEecC
Q 048216 582 LPVLQVLKLKQNSYSGRKL--ACSSDGFPKLKVLHLKSM 618 (654)
Q Consensus 582 l~~L~~L~L~~~~~~~~~l--~~~~~~f~~L~~L~l~~~ 618 (654)
+|.|++|.+-+|......- ..-.-.+|+|+.|++.+-
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7788888777544322110 001124677777777764
No 247
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.90 E-value=0.12 Score=61.26 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=38.0
Q ss_pred CCceechhhHHHHHHHHhcC------C-CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG------P-PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.+..++.+.+.+... . ....++.++|..|+|||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999988652 1 1246788999999999999999987
No 248
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.89 E-value=0.08 Score=54.47 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=51.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---ccccccChHHHHH
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL---SEIMKESSEMKKI 198 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~ 198 (654)
+.-+++-|+|.+|+||||||..+.. .....=..++||...+.++.. .+++++..... ....+.++ ...
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq--~l~ 123 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQ--ALE 123 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHH--HHH
Confidence 4568999999999999999977665 233333556788776666653 23444432111 01112222 444
Q ss_pred HHHHHHc-CCceEEEeccc
Q 048216 199 ILHEYVM-TKRYLIVLDNF 216 (654)
Q Consensus 199 ~l~~~L~-~kr~LiVLDDv 216 (654)
.+...++ +.--+||+|-|
T Consensus 124 ~~~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHHHhhccCCcEEEEcch
Confidence 4444443 45668999998
No 249
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.87 E-value=0.16 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...++|.++|.+|+||||++..+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999998877765
No 250
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.83 E-value=0.018 Score=54.61 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|+|.|.+|+||||+|+.+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 251
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.83 E-value=0.06 Score=49.13 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
||.|+|.+|.||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 252
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.82 E-value=0.035 Score=54.49 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~ 146 (654)
|.|.|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999987
No 253
>PRK00625 shikimate kinase; Provisional
Probab=94.81 E-value=0.02 Score=53.57 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|.++||.|+||||+|+.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 254
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.067 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.++|.+|+||||+|..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988875
No 255
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.78 E-value=0.14 Score=53.58 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=35.0
Q ss_pred CcEEEEEEcCCCchHHH-HHHHHHccccccCCcceeEEEEeCCCCCH--HHHHHHHHHHhCCC
Q 048216 123 QLSVVAVLDSIGLDKTA-FAAEAYNSNYVKHYFDCRAWVQESLPYDA--DQLLYDIIKLVMPS 182 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~ 182 (654)
+-+||.+||+.|+|||| ||+.++.-..... =..+..|+. ++|.+ .+-++.-.+-++.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITt-DtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITT-DTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEe-ccchhhHHHHHHHHHHHhCCc
Confidence 37999999999999987 8888776221122 234555654 34443 33444445555544
No 256
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.77 E-value=0.023 Score=53.21 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|.|+|++|+||||+|+.+.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 257
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.71 E-value=0.021 Score=49.92 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHccccccCCcc
Q 048216 127 VAVLDSIGLDKTAFAAEAYNSNYVKHYFD 155 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 155 (654)
|-|+|.+|+||||+|+++.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56899999999999999998 5666664
No 258
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.70 E-value=0.13 Score=54.97 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccChH-----
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESSE----- 194 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~----- 194 (654)
+-..++|.|..|+|||||.+.+++... -+.++.+-+.+.. .+.++.++.+..-.....- ....+...-
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 457899999999999999999998432 2566777776664 3445554433321111110 111111110
Q ss_pred -HHHHHHHHHH--cCCceEEEecccc
Q 048216 195 -MKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 195 -~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
...-.+.+++ ++|.+|+++||+-
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 0112233444 5899999999993
No 259
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.70 E-value=0.024 Score=53.52 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHcc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 260
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.69 E-value=0.11 Score=52.51 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+..+|.|+|..|.|||||...+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999999988
No 261
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.69 E-value=0.043 Score=53.34 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=41.6
Q ss_pred CCCCCCceechhhHHH---HHHHHhcC----CCCcEEEEEEcCCCchHHHHHHHHHccc
Q 048216 97 SFKDRDTVGLDNRIEE---LLDLLIEG----PPQLSVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 97 ~~~~~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
.+.-+++||-++.+.+ |++.|... +...+-|-.+|.+|.|||.+|+++.|..
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 3445689998877654 57777653 5778999999999999999999999943
No 262
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.69 E-value=0.12 Score=60.08 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=38.3
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998763 335678999999999999999877
No 263
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.67 E-value=0.028 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.|+|.+|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999987
No 264
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.67 E-value=0.18 Score=56.28 Aligned_cols=73 Identities=12% Similarity=0.227 Sum_probs=44.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFD--CRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILH 201 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 201 (654)
...+-|+|-.|.|||.|++++.+ .....+. .++++ +..++..++...+... ....++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yi------taeef~~el~~al~~~-------------~~~~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYV------SSEEFTNEFINSIRDG-------------KGDSFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEe------eHHHHHHHHHHHHHhc-------------cHHHHH
Confidence 34589999999999999999999 4443332 23344 3455555555554321 112233
Q ss_pred HHHcCCceEEEeccccC
Q 048216 202 EYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 202 ~~L~~kr~LiVLDDvw~ 218 (654)
+.++. -=+|||||+..
T Consensus 373 ~~y~~-~DLLlIDDIq~ 388 (617)
T PRK14086 373 RRYRE-MDILLVDDIQF 388 (617)
T ss_pred HHhhc-CCEEEEehhcc
Confidence 33433 34788899954
No 265
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.65 E-value=0.18 Score=55.40 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=38.0
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999997753 345667899999999999998876
No 266
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.65 E-value=0.038 Score=49.89 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=33.2
Q ss_pred EEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSR 183 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 183 (654)
+|.|-|.+|.||||+|+.+.++-..+- .+.-.+.++|++..+..-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-------------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL-------------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce-------------eeccHHHHHHHHHcCCCH
Confidence 689999999999999999998433221 244467778887776543
No 267
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.64 E-value=0.19 Score=53.26 Aligned_cols=87 Identities=11% Similarity=0.026 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccC-Ccc-eeEEEEeCCCCCHHH--HHHHHHHHhCCCCCcccccccChHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKH-YFD-CRAWVQESLPYDADQ--LLYDIIKLVMPSRRLSEIMKESSEMKKI 198 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 198 (654)
..++|.++|..|+||||.+..+...-.... .-. .+.-|+. ++|.... -++...+.++.+-. ...+.+. +..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~--l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIPVK--AIESFKD--LKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcceE--eeCcHHH--HHH
Confidence 468999999999999998877765221111 112 3334443 4554433 34455555544321 1122233 444
Q ss_pred HHHHHHcCCceEEEeccc
Q 048216 199 ILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 199 ~l~~~L~~kr~LiVLDDv 216 (654)
.+.+. .+.=+|++|..
T Consensus 248 ~L~~~--~~~DlVLIDTa 263 (388)
T PRK12723 248 EITQS--KDFDLVLVDTI 263 (388)
T ss_pred HHHHh--CCCCEEEEcCC
Confidence 44432 44567888886
No 268
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.62 E-value=0.14 Score=55.28 Aligned_cols=93 Identities=10% Similarity=0.025 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCchHHHHH-HHHHccccc-----cCCcceeEEEEeCCCCCHHHHHHHHHHHhCC-CCCc--ccccccCh-
Q 048216 124 LSVVAVLDSIGLDKTAFA-AEAYNSNYV-----KHYFDCRAWVQESLPYDADQLLYDIIKLVMP-SRRL--SEIMKESS- 193 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~--~~~~~~~~- 193 (654)
-.-++|.|-.|+|||||| -.+.|...+ .+.-+.++++-+.+......-+.+.+++-+. ...- ....++..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 467899999999999997 666774422 1344567888888876543333333333331 1110 00111111
Q ss_pred ---------HHHHHHHHHHHcCCceEEEeccccC
Q 048216 194 ---------EMKKIILHEYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 194 ---------~~~~~~l~~~L~~kr~LiVLDDvw~ 218 (654)
.-+++.+++ ++|.+|||+||+-.
T Consensus 269 ~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCEEEEEcCchH
Confidence 003344443 58999999999944
No 269
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.60 E-value=0.081 Score=56.94 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=54.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-.-++|.|-.|+|||||+..+........ =+.++++-+.+.. .+.++.+++...=.....- ....+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346799999999999999988765322111 1356677776654 4556666666532211110 01111111
Q ss_pred HHHHHHHHHHH---cCCceEEEeccc
Q 048216 194 EMKKIILHEYV---MTKRYLIVLDNF 216 (654)
Q Consensus 194 ~~~~~~l~~~L---~~kr~LiVLDDv 216 (654)
....-.+.+++ ++|.+||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 00233355665 679999999999
No 270
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.60 E-value=0.04 Score=61.21 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=39.0
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999987653 346788999999999999999887
No 271
>PRK06217 hypothetical protein; Validated
Probab=94.58 E-value=0.024 Score=53.77 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.|.|.|++|.||||+|+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999984
No 272
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.54 E-value=0.098 Score=56.00 Aligned_cols=95 Identities=12% Similarity=0.179 Sum_probs=58.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccC--Ccc---------eeEEEEeCCCCCHHHHHHHHHHHhC-CCCCc--ccc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKH--YFD---------CRAWVQESLPYDADQLLYDIIKLVM-PSRRL--SEI 188 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~~--~~~ 188 (654)
.-+-++|.|-.|+|||||+..+.+..+..+ ..| .++++-+.+.....+.+.+.+..-+ ....- ...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 346789999999999999999887543210 022 5677778888777776666666554 22110 111
Q ss_pred cccCh------HHHHHHHHHHHc---CCceEEEecccc
Q 048216 189 MKESS------EMKKIILHEYVM---TKRYLIVLDNFE 217 (654)
Q Consensus 189 ~~~~~------~~~~~~l~~~L~---~kr~LiVLDDvw 217 (654)
.+... ....-.+.++++ +|.+|+++||+-
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 11111 002233566665 699999999993
No 273
>PRK13947 shikimate kinase; Provisional
Probab=94.50 E-value=0.026 Score=52.75 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-|.|+||+|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 274
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.49 E-value=0.045 Score=60.17 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=26.8
Q ss_pred HHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 114 LDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 114 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++.+........+|+|.|..|.||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 334444545789999999999999999999987
No 275
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.49 E-value=0.024 Score=53.48 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 276
>PRK14974 cell division protein FtsY; Provisional
Probab=94.49 E-value=0.2 Score=52.08 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=32.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccC-CcceeEEEEeCCCCCHH--HHHHHHHHHhCC
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKH-YFDCRAWVQESLPYDAD--QLLYDIIKLVMP 181 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~ 181 (654)
...+|.++|+.|+||||++..+.. .... .+. ++.+. .+.|... +-++.....++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCC
Confidence 468999999999999997777665 2222 232 22332 3444333 334555666554
No 277
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.46 E-value=0.1 Score=48.60 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=32.6
Q ss_pred ceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 103 TVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 103 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+||....+.++++.+..-.....-|-|+|-.|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888887653212244559999999999999999993
No 278
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.44 E-value=0.024 Score=53.63 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
||.|+|++|+||||+|+.+.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 279
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.44 E-value=0.082 Score=53.25 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=17.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..|.|.|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999998887
No 280
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.43 E-value=0.16 Score=52.51 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=49.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESL-PYDADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-..++|+|..|.|||||.+.+.+.. .. +..+..-+.. .-++.++....+..-.....- ....++..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~--~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT--TA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC--CC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 34678999999999999999999832 21 2333444443 345556555554432211110 00111100
Q ss_pred HHHHHHHHHHH--cCCceEEEeccc
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNF 216 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDv 216 (654)
....-.+.+++ ++|.+||++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 00122233333 589999999998
No 281
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.42 E-value=0.14 Score=55.33 Aligned_cols=86 Identities=16% Similarity=0.075 Sum_probs=43.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHH--HHHHHHHHHhCCCCCcccccccChHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDAD--QLLYDIIKLVMPSRRLSEIMKESSEMKKIILH 201 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 201 (654)
.++|.++|.+|+||||++..+.........-..+..|+. +++... +-++...+.++.... ...+..+ +...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~-D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~--l~~~l~ 295 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL-DTYRIGAVEQLKTYAKIMGIPVE--VVYDPKE--LAKALE 295 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC-CccHHHHHHHHHHHHHHhCCceE--ccCCHHh--HHHHHH
Confidence 469999999999999988766542110122234455553 333321 223333333333221 1122233 444454
Q ss_pred HHHcCCceEEEeccc
Q 048216 202 EYVMTKRYLIVLDNF 216 (654)
Q Consensus 202 ~~L~~kr~LiVLDDv 216 (654)
+ +. ..=+|++|..
T Consensus 296 ~-~~-~~DlVlIDt~ 308 (424)
T PRK05703 296 Q-LR-DCDVILIDTA 308 (424)
T ss_pred H-hC-CCCEEEEeCC
Confidence 3 23 3457777865
No 282
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.41 E-value=0.036 Score=53.27 Aligned_cols=25 Identities=16% Similarity=0.023 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....+|+|+|+.|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 283
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.41 E-value=0.03 Score=52.85 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|+|+|..|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999998
No 284
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.38 E-value=0.051 Score=58.36 Aligned_cols=46 Identities=15% Similarity=-0.021 Sum_probs=38.1
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999988887652 335588999999999999999877
No 285
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.38 E-value=0.11 Score=56.78 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|.+|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999987765
No 286
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.38 E-value=0.12 Score=60.11 Aligned_cols=50 Identities=22% Similarity=0.172 Sum_probs=38.2
Q ss_pred CCCCCceechhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE-----------GPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+.-.++.|.+..++.|.+.+.. +-...+-|-++|.+|.|||++|+++.+.
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3445688999998888887642 1123455888999999999999999983
No 287
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.37 E-value=0.043 Score=50.11 Aligned_cols=35 Identities=14% Similarity=-0.162 Sum_probs=25.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEE
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWV 160 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 160 (654)
..||=|.|..|.||||||+++.+ +....-..+..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 36889999999999999999998 444433444454
No 288
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.36 E-value=0.082 Score=56.74 Aligned_cols=95 Identities=13% Similarity=0.183 Sum_probs=56.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-.-++|.|-.|+|||+|+..+.+... +.+-+.++++-+.+.. .+.++.+++...=.....- ....+...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 346789999999999999988876422 2334788888887765 4455666655431111110 01111111
Q ss_pred HHHHHHHHHHHc---CCceEEEeccccC
Q 048216 194 EMKKIILHEYVM---TKRYLIVLDNFEN 218 (654)
Q Consensus 194 ~~~~~~l~~~L~---~kr~LiVLDDvw~ 218 (654)
....-.+.++++ ++.+|+++||+-.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 002334556654 6999999999933
No 289
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.11 Score=59.26 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=33.9
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.++||+++++++++.|.....+-.| .+|-+|+|||++|.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHH
Confidence 46899999999999999876333222 469999999997654444
No 290
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.33 E-value=0.09 Score=54.47 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=23.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
...+.++|||.+|.|||.+|++|++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999994
No 291
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.33 E-value=0.15 Score=54.55 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESL-PYDADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-..++|+|..|+|||||++.+.+.. +. +..+.+.+.+ .-.+.++.++.+..-.....- ....+...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~--~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT--DA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC--CC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 34689999999999999999998732 22 2222233333 334555555544332211110 01111111
Q ss_pred HHHHHHHHHHH--cCCceEEEeccc
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNF 216 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDv 216 (654)
....-.+.+++ +++.+|+++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 00122244444 589999999999
No 292
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.32 E-value=0.13 Score=60.43 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=37.6
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG-------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|-++.++.|.+.+... +....++.++|..|+|||.||+++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999888531 22345789999999999999998876
No 293
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.31 E-value=0.14 Score=51.33 Aligned_cols=87 Identities=13% Similarity=0.050 Sum_probs=50.0
Q ss_pred cEEEEEEcCCCchHHHHH-HHHHccccccCCccee-EEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccChH----
Q 048216 124 LSVVAVLDSIGLDKTAFA-AEAYNSNYVKHYFDCR-AWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESSE---- 194 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~---- 194 (654)
-+-++|.|-.|+|||||| ..+.+. . .-+.+ +++-+.+.. .+.++.+++...=.....- ....++...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 467899999999999996 667662 2 23444 556666664 4556666665432111110 011111110
Q ss_pred ------HHHHHHHHHHcCCceEEEeccc
Q 048216 195 ------MKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 195 ------~~~~~l~~~L~~kr~LiVLDDv 216 (654)
-+++.++. ++|.+|||+||+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 02334433 589999999998
No 294
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.30 E-value=0.076 Score=47.68 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=43.7
Q ss_pred EEEEcCCCchHHHHHHHHHccccccCCcceeE-EEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRA-WVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVM 205 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 205 (654)
|-++|..|+|||+||+.++. .. +..+ -+.++...+..++....--. ... ....... +...++
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~~~~~-~~~----~~~~~~~--l~~a~~---- 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGSYDPS-NGQ----FEFKDGP--LVRAMR---- 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCEEET--TTT----TCEEE-C--CCTTHH----
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceeeeeec-ccc----ccccccc--cccccc----
Confidence 56899999999999999998 33 3223 35678888887766432222 111 1111111 111111
Q ss_pred CCceEEEeccccC
Q 048216 206 TKRYLIVLDNFEN 218 (654)
Q Consensus 206 ~kr~LiVLDDvw~ 218 (654)
+...+|||++..
T Consensus 65 -~~~il~lDEin~ 76 (139)
T PF07728_consen 65 -KGGILVLDEINR 76 (139)
T ss_dssp -EEEEEEESSCGG
T ss_pred -ceeEEEECCccc
Confidence 888999999853
No 295
>PRK05922 type III secretion system ATPase; Validated
Probab=94.29 E-value=0.17 Score=54.18 Aligned_cols=90 Identities=11% Similarity=0.149 Sum_probs=49.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCc--ccccccCh------H
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP-YDADQLLYDIIKLVMPSRRL--SEIMKESS------E 194 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~--~~~~~~~~------~ 194 (654)
-..++|+|..|+|||||.+.+.+.. .-+....+-+++. -.+.+.+.+..........- ....+... .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4569999999999999999998732 1233333334333 23345554444333222210 11111111 0
Q ss_pred HHHHHHHHHH--cCCceEEEecccc
Q 048216 195 MKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 195 ~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
...-.+.+++ +++.+|+++||+=
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 0222244444 5899999999993
No 296
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.28 E-value=0.05 Score=52.03 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=36.5
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-++.++++.-.-.++ ++.-+-|.||+|+||||-+..+.+
T Consensus 26 l~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHH
Confidence 357999999999887766665 577888999999999996666555
No 297
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.28 E-value=0.18 Score=54.18 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=50.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-..++|+|..|+|||||++.+.+.. ..+..+...+.... ++.++...+...-.....- ....+...
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 34679999999999999999998732 12344444444432 4455555544432221110 01111111
Q ss_pred HHHHHHHHHHH--cCCceEEEeccccC
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNFEN 218 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDvw~ 218 (654)
......+.+++ ++|.+|+++||+-.
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 00112234444 58999999999933
No 298
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.28 E-value=0.029 Score=50.82 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|.|.|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 299
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.17 Score=50.90 Aligned_cols=79 Identities=9% Similarity=0.085 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccc--cCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYV--KHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILH 201 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 201 (654)
-|+|-++|++|.|||+|.+++++.-.+ .+.+....-+.+ +...+..+....=+ .-... +-++|+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi----nshsLFSKWFsESg--------KlV~k--mF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI----NSHSLFSKWFSESG--------KLVAK--MFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE----ehhHHHHHHHhhhh--------hHHHH--HHHHHH
Confidence 489999999999999999999996533 334444444544 22333333332211 22233 566677
Q ss_pred HHHcCCce--EEEeccc
Q 048216 202 EYVMTKRY--LIVLDNF 216 (654)
Q Consensus 202 ~~L~~kr~--LiVLDDv 216 (654)
+.+.++.. ++.+|.|
T Consensus 243 ELv~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEV 259 (423)
T ss_pred HHHhCCCcEEEEEeHHH
Confidence 77776654 4566988
No 300
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.25 E-value=0.12 Score=55.29 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCC-c-ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP-YDADQLLYDIIKLVMPSRR-L-SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~-~-~~~~~~~~------ 193 (654)
.-..++|+|..|+|||||++.+.+.. ..+..+++.+.+. ..+.+++.+....=..... - ....+...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 44689999999999999999998732 3444566655554 3444555554321100000 0 01111111
Q ss_pred HHHHHHHHHHH--cCCceEEEecccc
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
....-.+.+++ ++|++|+++||+-
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 00122234444 5899999999993
No 301
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.24 E-value=0.043 Score=51.09 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999887
No 302
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.23 E-value=0.039 Score=53.41 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.2
Q ss_pred HhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 117 LIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 117 L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+..+....+.|.|+|..|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 344445778999999999999999999986
No 303
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.2 Score=56.00 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=37.4
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|-+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 468998888888888887652 346788899999999999999887
No 304
>PRK04296 thymidine kinase; Provisional
Probab=94.16 E-value=0.054 Score=51.68 Aligned_cols=85 Identities=8% Similarity=-0.053 Sum_probs=43.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYV 204 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 204 (654)
.++-|+|..|.||||+|..... +...+-..++.+. ..++.......++++++............+ +...+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~--~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTD--IFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHH--HHHHHHh-h
Confidence 4778899999999999977766 3333322233331 222322223345555543221001112222 4444444 2
Q ss_pred cCCceEEEeccc
Q 048216 205 MTKRYLIVLDNF 216 (654)
Q Consensus 205 ~~kr~LiVLDDv 216 (654)
.++--+||+|.+
T Consensus 76 ~~~~dvviIDEa 87 (190)
T PRK04296 76 GEKIDCVLIDEA 87 (190)
T ss_pred CCCCCEEEEEcc
Confidence 334458999997
No 305
>PRK13975 thymidylate kinase; Provisional
Probab=94.15 E-value=0.038 Score=52.96 Aligned_cols=22 Identities=18% Similarity=0.006 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999998
No 306
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.15 E-value=0.04 Score=49.65 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=26.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHcccccc-CCcceeEEEEeCC
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVK-HYFDCRAWVQESL 164 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~ 164 (654)
++|+|+|..|+|||||++.+.+ ... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4899999999999999999998 443 4455555555443
No 307
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.15 E-value=0.036 Score=50.75 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 048216 126 VVAVLDSIGLDKTAFAAEAY 145 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~ 145 (654)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 308
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.14 E-value=0.29 Score=46.52 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 112 ELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 112 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+.+.+..+ .-...+-++|..|+||||+|+.+.+
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445555544 2346788999999999999988876
No 309
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.14 E-value=0.056 Score=51.22 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=30.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEe
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQE 162 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 162 (654)
.++|.|+|..|+|||||++++.+ .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 47899999999999999999998 66677865555543
No 310
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.13 E-value=0.028 Score=48.05 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~ 146 (654)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999776
No 311
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.13 E-value=0.033 Score=50.85 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+|.|.|+.|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4778999999999999999883
No 312
>PRK13949 shikimate kinase; Provisional
Probab=94.12 E-value=0.035 Score=51.84 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-|.|+|+.|.||||+|+.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999988
No 313
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.12 E-value=0.037 Score=52.07 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|.+.|++|+||||+|+.+.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 314
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.08 E-value=0.041 Score=49.44 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|+|+|..|+|||||++.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 315
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.07 E-value=0.12 Score=58.46 Aligned_cols=76 Identities=8% Similarity=0.018 Sum_probs=51.0
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccC-CcceeEEEEeCCCCCHHHHHHHHHHH
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKH-YFDCRAWVQESLPYDADQLLYDIIKL 178 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~~~ 178 (654)
-++++|.++.++.+...+.... -+-++|+.|+||||+|+++.+ .+.. .|...+.+.-+ .-+...+++.+...
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVEVPAG 89 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHHHHHh
Confidence 3568999998888888777652 455999999999999999998 4433 33333333322 22445567776666
Q ss_pred hCCC
Q 048216 179 VMPS 182 (654)
Q Consensus 179 l~~~ 182 (654)
++..
T Consensus 90 ~g~~ 93 (608)
T TIGR00764 90 EGRE 93 (608)
T ss_pred hchH
Confidence 6543
No 316
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.03 E-value=0.088 Score=50.24 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=33.6
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|-+..+..+.-..... .-|-++|..|+|||++|+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHH
Confidence 457899999998887766653 5688999999999999999874
No 317
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.03 E-value=0.28 Score=50.96 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=36.4
Q ss_pred CceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 102 DTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+++|-+....++..+....+....-+-++|+.|+||||+|.++.+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~ 46 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAK 46 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHH
Confidence 467888888899888886543334588999999999999988877
No 318
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.00 E-value=0.043 Score=53.05 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..+|+|+|..|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999983
No 319
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.98 E-value=0.23 Score=53.59 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.-..++|+|..|+|||||++.+.+.
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999999873
No 320
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.96 E-value=0.04 Score=50.39 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~ 146 (654)
|.|+|++|.||||+|+.+.+
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 321
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.88 E-value=0.17 Score=54.47 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=49.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc--ccccccCh------H
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL--SEIMKESS------E 194 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~------~ 194 (654)
.-..++|.|..|.|||||++.+....... ..+++..--+.-.+.++.+.+...-.....- ....+... .
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999998743221 1333333233344555555554332111110 01111111 0
Q ss_pred HHHHHHHHHH--cCCceEEEecccc
Q 048216 195 MKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 195 ~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
...-.+.+++ ++|.+|+++||+-
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 0122234444 5899999999993
No 322
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.82 E-value=0.083 Score=55.85 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=38.5
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|.++.++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987653 345778999999999999988876
No 323
>PRK10536 hypothetical protein; Provisional
Probab=93.81 E-value=0.11 Score=51.43 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=40.5
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeE
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRA 158 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 158 (654)
...+.++......++.+|.+. .+|.+.|..|.|||+||.++..+.-..+.|+..+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 345677888889999988663 4899999999999999998877432234454433
No 324
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.80 E-value=0.047 Score=51.92 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHcc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+|.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999873
No 325
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.80 E-value=0.097 Score=49.18 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=9.1
Q ss_pred CCCCeEEEeccCCccc
Q 048216 505 NFISALHHCYCTEDIL 520 (654)
Q Consensus 505 ~~L~~L~l~~~~~~~~ 520 (654)
++|+.|.+.+|+...+
T Consensus 88 p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 88 PNLKTLILTNNSIQEL 103 (233)
T ss_pred cccceEEecCcchhhh
Confidence 4566666666644443
No 326
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.79 E-value=0.11 Score=49.76 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 327
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.76 E-value=0.075 Score=51.49 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.++||+|..|.||||||+.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 328
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.73 E-value=0.054 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988776
No 329
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.71 E-value=0.027 Score=54.91 Aligned_cols=108 Identities=16% Similarity=0.081 Sum_probs=0.0
Q ss_pred HhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhccccc
Q 048216 451 LSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILIL 530 (654)
Q Consensus 451 f~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 530 (654)
+-.+.+|+.|.+.++.++.+ .++-.|++|+.|.++. ...+....++....++++|++|++++| .+..++
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsd-n~~~~~~~l~vl~e~~P~l~~l~ls~N---------ki~~ls 107 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSD-NYRRVSGGLEVLAEKAPNLKVLNLSGN---------KIKDLS 107 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccC-CcccccccceehhhhCCceeEEeecCC---------cccccc
Q ss_pred CCCCCeEEEEeecCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccc---cccCcccceEE
Q 048216 531 SCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPA---LEKLPVLQVLK 589 (654)
Q Consensus 531 ~~~~~L~L~l~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~---l~~l~~L~~L~ 589 (654)
.+. -+..+ .+|..|++.+|......-.. +.-+|+|++|+
T Consensus 108 tl~-------------------pl~~l-~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 108 TLR-------------------PLKEL-ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred ccc-------------------hhhhh-cchhhhhcccCCccccccHHHHHHHHhhhhcccc
No 330
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.71 E-value=0.03 Score=30.35 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=7.0
Q ss_pred CceEEcCCCccccccC
Q 048216 456 NLYTLDMPFSYIDHTA 471 (654)
Q Consensus 456 ~L~~L~L~~~~l~~lP 471 (654)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555554
No 331
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.70 E-value=0.053 Score=50.83 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|.|+|+.|.||||+|+.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 35699999999999999999998
No 332
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.69 E-value=0.2 Score=51.96 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~ 146 (654)
+.+.|+.|.||||+|+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999986
No 333
>PTZ00035 Rad51 protein; Provisional
Probab=93.69 E-value=0.47 Score=49.53 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=44.1
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 048216 113 LLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKH----YFDCRAWVQESLPYDADQLLYDIIKLVMP 181 (654)
Q Consensus 113 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 181 (654)
+-++|..+=..-.++.|+|..|.|||||+..+.-..+... .=..++||+-...|++.++ .++++.++.
T Consensus 107 LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 107 LDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred HHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 3344544434568999999999999999988764323211 1134669988777888774 334555443
No 334
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.69 E-value=0.2 Score=54.15 Aligned_cols=94 Identities=14% Similarity=0.234 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcc--eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh-----
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFD--CRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS----- 193 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~----- 193 (654)
-.-++|.|-.|+|||||+..+.+.......+. .++.+-+.+.. .+.++.+++...=.....- ....+...
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 46789999999999999999988544322222 45566666654 4556666655332111110 01111111
Q ss_pred -HHHHHHHHHHHc---CCceEEEecccc
Q 048216 194 -EMKKIILHEYVM---TKRYLIVLDNFE 217 (654)
Q Consensus 194 -~~~~~~l~~~L~---~kr~LiVLDDvw 217 (654)
......+.++++ ++++|+++||+=
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 002233556654 789999999993
No 335
>PRK14530 adenylate kinase; Provisional
Probab=93.68 E-value=0.048 Score=53.21 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 336
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.68 E-value=0.054 Score=51.90 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|||+|+.|+||||+|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998776
No 337
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.67 E-value=0.048 Score=51.30 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999984
No 338
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.62 E-value=0.32 Score=48.18 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=36.0
Q ss_pred HHHhcCCCCcEEEEEEcCCCchHHHHHHHH-HccccccCCcceeEEEEeCCCCCHHHHHHH
Q 048216 115 DLLIEGPPQLSVVAVLDSIGLDKTAFAAEA-YNSNYVKHYFDCRAWVQESLPYDADQLLYD 174 (654)
Q Consensus 115 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v-~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 174 (654)
++|..+=..-+++.|.|.+|.||||+|.++ |+ .. ..=+.++||+... ++.++.+.
T Consensus 12 ~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~--~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 12 EILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred HHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH--HH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 344444345689999999999999999764 44 22 2245677887654 44455544
No 339
>PLN02348 phosphoribulokinase
Probab=93.62 E-value=0.12 Score=54.19 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=23.6
Q ss_pred CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 121 PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 121 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+...+|||.|..|.||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999987
No 340
>PRK13948 shikimate kinase; Provisional
Probab=93.60 E-value=0.059 Score=50.87 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+.|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999988
No 341
>PRK06620 hypothetical protein; Validated
Probab=93.59 E-value=0.15 Score=49.66 Aligned_cols=48 Identities=10% Similarity=-0.089 Sum_probs=30.6
Q ss_pred CCCceec-hh-hHHHHHHHHhcCCCCc--EEEEEEcCCCchHHHHHHHHHcc
Q 048216 100 DRDTVGL-DN-RIEELLDLLIEGPPQL--SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 100 ~~~~vGr-~~-~~~~l~~~L~~~~~~~--~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+.-+||- .+ ....+.++-...+.+. +.+-|||..|+|||+||+++.+.
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc
Confidence 3445665 22 3444444432211122 66899999999999999998884
No 342
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.57 E-value=0.059 Score=46.74 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHccc
Q 048216 127 VAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~~~ 148 (654)
|.|+|..|+|||||.+.+.+.+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 343
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.57 E-value=0.061 Score=51.50 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|.|.+|+||||+|+.+.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 344
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.56 E-value=0.17 Score=50.99 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHH
Q 048216 108 NRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLL 172 (654)
Q Consensus 108 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 172 (654)
+-.+++..++..+ .-|-+.|.+|+|||+||+++.+ .... ....++.+...+..+++
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 3445555555543 3455899999999999999987 3322 23455555555555443
No 345
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.56 E-value=0.26 Score=51.57 Aligned_cols=88 Identities=6% Similarity=0.015 Sum_probs=47.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCH--HHHHHHHHHHhCCCCCcccccccChHHHHHH
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDA--DQLLYDIIKLVMPSRRLSEIMKESSEMKKII 199 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 199 (654)
...++|+|+|..|+||||++..+... ....=..+.+|+. ++|.. .+-++...+.++.+.. ...+..+ +...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lIta-DtyR~gAveQLk~yae~lgvpv~--~~~dp~d--L~~a 276 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITT-DTFRSGAVEQFQGYADKLDVELI--VATSPAE--LEEA 276 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeC-CccCccHHHHHHHHhhcCCCCEE--ecCCHHH--HHHH
Confidence 35689999999999999998887753 2111123445553 34433 4445555555443321 1222233 4444
Q ss_pred HHHHH-cCCceEEEeccc
Q 048216 200 LHEYV-MTKRYLIVLDNF 216 (654)
Q Consensus 200 l~~~L-~~kr~LiVLDDv 216 (654)
+...- .+..=+|++|-.
T Consensus 277 l~~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 277 VQYMTYVNCVDHILIDTV 294 (407)
T ss_pred HHHHHhcCCCCEEEEECC
Confidence 43322 133456666764
No 346
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.55 E-value=0.26 Score=56.98 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=36.6
Q ss_pred CceechhhHHHHHHHHhcC-------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 102 DTVGLDNRIEELLDLLIEG-------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++|-++.++.|.+.+... +.....+-++|+.|+|||++|+.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999998888631 22345788999999999999999987
No 347
>PRK13946 shikimate kinase; Provisional
Probab=93.52 E-value=0.055 Score=51.34 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+.|.++||.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999998
No 348
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.52 E-value=0.3 Score=53.16 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccc
Q 048216 111 EELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMK 190 (654)
Q Consensus 111 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 190 (654)
..+-+.|..+=..-.++-|.|.+|+|||||+.++... ....=..++|++..+. ...+... ++.++....+.....
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~ 141 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLA 141 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeC
Confidence 3444445444234579999999999999999888763 2222235677765443 3333222 445543222111111
Q ss_pred cChHHHHHHHHHHH-cCCceEEEeccc
Q 048216 191 ESSEMKKIILHEYV-MTKRYLIVLDNF 216 (654)
Q Consensus 191 ~~~~~~~~~l~~~L-~~kr~LiVLDDv 216 (654)
... +. .+.+.+ +.+--+||+|.+
T Consensus 142 e~~--l~-~i~~~i~~~~~~lVVIDSI 165 (446)
T PRK11823 142 ETN--LE-AILATIEEEKPDLVVIDSI 165 (446)
T ss_pred CCC--HH-HHHHHHHhhCCCEEEEech
Confidence 122 22 222223 235568999997
No 349
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.52 E-value=0.078 Score=52.11 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=36.9
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHH
Q 048216 109 RIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLY 173 (654)
Q Consensus 109 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 173 (654)
...++++.+.....+..+|||.|.+|+||+||.-++...-.-+.+==.++=|.-|.+|.--.++-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 45667777766555789999999999999999977765221111112233444466666555443
No 350
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.46 E-value=0.049 Score=53.28 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+....|-++||+|.||||..|.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45678888999999999999999874
No 351
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.45 E-value=0.1 Score=53.75 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=41.5
Q ss_pred CCCceechhhHHHHHHHHhcC----CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEG----PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.+++|.++.+++|++.+... +..-+|+-++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999753 45679999999999999999998877
No 352
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.43 E-value=0.23 Score=53.26 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.-..++|+|..|+|||||++.+.+.
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 4578999999999999999999873
No 353
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.42 E-value=0.052 Score=49.86 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
||+|+|..|+|||||+.++..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 354
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.39 E-value=0.31 Score=52.17 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+++|..|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 355
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.38 E-value=0.11 Score=53.51 Aligned_cols=47 Identities=15% Similarity=0.033 Sum_probs=29.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLL 172 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 172 (654)
.++|-+.|.||+||||+|-+..- ........++-|+.....+..+++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhh
Confidence 47899999999999999977443 222333445555554444444433
No 356
>PLN02924 thymidylate kinase
Probab=93.37 E-value=0.26 Score=48.06 Aligned_cols=54 Identities=7% Similarity=-0.024 Sum_probs=33.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIK 177 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 177 (654)
....|+|-|..|+||||+|+.+.+.-+.. .+....+-..+......+..++++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 45789999999999999999998843222 2343322222222334455555554
No 357
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.37 E-value=0.049 Score=50.49 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~ 146 (654)
|.|+|..|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988
No 358
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.37 E-value=0.069 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHccc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
-|+++|.+|+|||||++.+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 359
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.37 E-value=0.054 Score=55.06 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=18.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.|+|+|-||+||||+|..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4799999999999997765553
No 360
>PRK06761 hypothetical protein; Provisional
Probab=93.36 E-value=0.12 Score=52.11 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHcc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
++|.|.|.+|+||||+|+.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999983
No 361
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.36 E-value=0.15 Score=44.39 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=34.7
Q ss_pred CCceechhhHHHHHHHHhc-----CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIE-----GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|-.-..+.|++.+.+ .+.+.-|++.+|..|+|||.+|+.+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 3577766666666666643 256789999999999999998777765
No 362
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.34 E-value=0.26 Score=52.67 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-..++|+|..|.|||||++.+.+... -+..+.+.+.+.. .+.++.......=.....- ....+...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 346799999999999999999987322 2344445555543 3444444443321111110 00111100
Q ss_pred HHHHHHHHHHH--cCCceEEEeccc
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNF 216 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDv 216 (654)
....-.+.+++ +++.+|+++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 00122233443 589999999999
No 363
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.12 Score=52.92 Aligned_cols=46 Identities=26% Similarity=0.266 Sum_probs=37.2
Q ss_pred CCceechhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG-----------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++=|.++.+++|.+.+.-. =..++=|-.||++|.|||-||++|+|
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~ 207 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN 207 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 35668999999998887432 13456688999999999999999999
No 364
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.34 E-value=0.44 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+||+++|..|+||||.+..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999998877765
No 365
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.30 E-value=0.12 Score=53.47 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 110 IEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 110 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|.+.+........+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4456666654345678999999999999999988765
No 366
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.28 E-value=0.13 Score=49.59 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|+|.|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 689999999999999988443
No 367
>PRK04182 cytidylate kinase; Provisional
Probab=93.27 E-value=0.065 Score=50.41 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999988
No 368
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.26 E-value=0.15 Score=57.56 Aligned_cols=76 Identities=9% Similarity=0.027 Sum_probs=56.5
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcccccc-CCcceeEEEEeCCCCCHHHHHHHHHHH
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVK-HYFDCRAWVQESLPYDADQLLYDIIKL 178 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~ 178 (654)
-++++|.++.++.|...+... +.+-++|.+|.||||+|+.+.+ .+. .+|+..+|..-+ .-+...+++.+..+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~~~~~~np-~~~~~~~~~~v~~~ 102 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQDILVYPNP-EDPNNPKIRTVPAG 102 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHH--HcChHhHHHheEeeCC-CcchHHHHHHHHHh
Confidence 346889999999888877665 3688999999999999999987 332 346778887653 33666777777766
Q ss_pred hCCC
Q 048216 179 VMPS 182 (654)
Q Consensus 179 l~~~ 182 (654)
++..
T Consensus 103 ~G~~ 106 (637)
T PRK13765 103 KGKQ 106 (637)
T ss_pred cCHH
Confidence 6543
No 369
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.26 E-value=0.36 Score=51.68 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.++|..|+||||+|..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998877764
No 370
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.25 E-value=0.075 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAY 145 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~ 145 (654)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999999976
No 371
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.24 E-value=0.021 Score=33.30 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=18.1
Q ss_pred eeeEEecCCCCCCCCCCcCChhHHhcC
Q 048216 428 FLRVLNLGSLLNIPSLKSLPSSLLSSL 454 (654)
Q Consensus 428 ~Lr~L~L~~~~~lp~i~~lP~~if~~L 454 (654)
+|++|||++| .++++|+++ ++|
T Consensus 1 ~L~~Ldls~n----~l~~ip~~~-~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN----NLTSIPSSF-SNL 22 (22)
T ss_dssp TESEEEETSS----EESEEGTTT-TT-
T ss_pred CccEEECCCC----cCEeCChhh-cCC
Confidence 5899999999 888999885 654
No 372
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.22 E-value=0.25 Score=53.04 Aligned_cols=95 Identities=15% Similarity=0.194 Sum_probs=54.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-.-++|.|-.|+|||||+..+..... +++=+.++++-+.+.- .+.++.+++...=.....- ....+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346789999999999999988776321 1111366677776653 4566766665421111110 01111111
Q ss_pred HHHHHHHHHHH---cCCceEEEeccccC
Q 048216 194 EMKKIILHEYV---MTKRYLIVLDNFEN 218 (654)
Q Consensus 194 ~~~~~~l~~~L---~~kr~LiVLDDvw~ 218 (654)
....-.+.+++ +++.+|+|+||+-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 00223355665 46899999999933
No 373
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.21 E-value=0.099 Score=52.19 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHH
Q 048216 110 IEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYD 174 (654)
Q Consensus 110 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 174 (654)
-.+++..+.....+..||||.|.+|+||+||.-++-..-.-..+==.++=|.-|.+|.--.|+-+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 45667777666667899999999999999999777653222222223444555777766666544
No 374
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.20 E-value=0.29 Score=52.51 Aligned_cols=93 Identities=9% Similarity=0.046 Sum_probs=51.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc--ccccccCh------H
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL--SEIMKESS------E 194 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~------~ 194 (654)
.-..++|+|..|.|||||++.+....+. ....+...-.+...+.++.+..+..-+....- ....+... .
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 4468899999999999999999884321 11233222223366767766655543221110 00011111 0
Q ss_pred HHHHHHHHHH--cCCceEEEeccccC
Q 048216 195 MKKIILHEYV--MTKRYLIVLDNFEN 218 (654)
Q Consensus 195 ~~~~~l~~~L--~~kr~LiVLDDvw~ 218 (654)
..+..+.+++ ++|.+||++||+=.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 0222333443 48999999999844
No 375
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.22 Score=56.81 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=64.7
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCcEEEEEEcCCCchHHHHHHHHHccccccCCc---ceeEEEEeCCCCCHHH
Q 048216 101 RDTVGLDNRIEELLDLLIEG-------PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF---DCRAWVQESLPYDADQ 170 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 170 (654)
..++|-++.++.|.+.+... +..+.+.-.+|+.|||||-||+++.. ..| +..+- ||+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR------~DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIR------IDMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCcccee------echHH
Confidence 46999999999999988642 23456777899999999999998876 234 22222 34444
Q ss_pred HHH-HHHHHhCCCCCc-ccccccChHHHHHHHHHHHcCCce-EEEeccccC
Q 048216 171 LLY-DIIKLVMPSRRL-SEIMKESSEMKKIILHEYVMTKRY-LIVLDNFEN 218 (654)
Q Consensus 171 ~~~-~i~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~kr~-LiVLDDvw~ 218 (654)
.+. .-.+.|-+.++. +.... ...|-+.++.|.| +|.||.|-.
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee------GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE------GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc------ccchhHhhhcCCCeEEEechhhh
Confidence 443 333444444331 22221 2346666777877 777899854
No 376
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.19 E-value=0.34 Score=51.83 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=48.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-..++|+|..|.|||||++.+.+.. .. +..+..-+.+.. .+.++..+.+.+-+....- ....+...
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~--~~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNA--KA--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CC--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 45789999999999999999888732 21 222323344433 4444544443321111110 11111111
Q ss_pred HHHHHHHHHHH--cCCceEEEecccc
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
....-.+.+++ ++|.+|+++||+-
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 00222334444 4899999999993
No 377
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.18 E-value=0.26 Score=56.61 Aligned_cols=96 Identities=18% Similarity=0.119 Sum_probs=58.0
Q ss_pred HHHHHHh-cCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---cc
Q 048216 112 ELLDLLI-EGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL---SE 187 (654)
Q Consensus 112 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~ 187 (654)
.|-.+|- .+=..-+++-|+|..|+||||||..+.-. ....=..++|+.....++.. .+++++..... ..
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~ 119 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQ 119 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEec
Confidence 3334454 23245689999999999999999665442 22223557899877777743 56666654321 11
Q ss_pred ccccChHHHHHHHHHHHcC-CceEEEeccc
Q 048216 188 IMKESSEMKKIILHEYVMT-KRYLIVLDNF 216 (654)
Q Consensus 188 ~~~~~~~~~~~~l~~~L~~-kr~LiVLDDv 216 (654)
....+. ....+...++. +--|||+|-+
T Consensus 120 ~~~~E~--~l~~i~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 120 PDTGEQ--ALEIADMLIRSGALDIVVIDSV 147 (790)
T ss_pred CCCHHH--HHHHHHHHhhcCCCeEEEEcch
Confidence 112233 45555555543 5568999997
No 378
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.17 E-value=0.073 Score=51.87 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHccc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
.-|.|+|.+|+|||||+.++.++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 568899999999999999998864
No 379
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.10 E-value=0.13 Score=57.54 Aligned_cols=47 Identities=15% Similarity=-0.011 Sum_probs=35.3
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+..+.|.+-.+.|.++-........+|.|+|+.|+||||+|++++.
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHH
Confidence 34456676666655555544445567999999999999999999987
No 380
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.06 E-value=0.3 Score=53.53 Aligned_cols=48 Identities=25% Similarity=0.172 Sum_probs=34.9
Q ss_pred CCCceechhhHHHHHHHHhc--------CCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 100 DRDTVGLDNRIEELLDLLIE--------GPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-.++.|.+..++.+.+.... +-...+-|-++|.+|.|||.+|+++.+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 35688888777766653211 1134566889999999999999999983
No 381
>PRK06820 type III secretion system ATPase; Validated
Probab=93.06 E-value=0.55 Score=50.52 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=27.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP 165 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 165 (654)
.-..++|+|..|+|||||++.+.... +-+..+..-+.+.
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGer 200 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGER 200 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccC
Confidence 34678999999999999999998732 1234444555554
No 382
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.04 E-value=0.11 Score=53.46 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 111 EELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 111 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+.+-+........+|+|+|.+|+|||||+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 344444443345689999999999999999988776
No 383
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.02 E-value=0.25 Score=53.57 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCchHHHHH-HHHHccccccCCcce-eEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh----
Q 048216 123 QLSVVAVLDSIGLDKTAFA-AEAYNSNYVKHYFDC-RAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS---- 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~---- 193 (654)
.-.-++|.|-.|+|||||| ..+.|.. .-|. ++++-+.+.. .+.++.+.+...=.....- ....+...
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 3467899999999999996 5788732 3354 6777787764 4556666655532111110 00111111
Q ss_pred --HHHHHHHHHHH--cCCceEEEecccc
Q 048216 194 --EMKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 194 --~~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
......+.+++ ++|.+|||+||+-
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlT 264 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLT 264 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChh
Confidence 00122244444 5899999999993
No 384
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.01 E-value=0.13 Score=53.49 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=35.9
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+||-++.+..++-.+.+. ...-+.|.|..|.|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~--~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP--KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 56899999998887776664 234567999999999999999975
No 385
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.00 E-value=0.071 Score=51.86 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=18.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999997755544
No 386
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.00 E-value=0.073 Score=54.25 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=18.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|+|+|-||+||||+|..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 6899999999999997765543
No 387
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.98 E-value=0.44 Score=44.49 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=45.9
Q ss_pred EEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccc-cChHHHHHHHHHHH
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMK-ESSEMKKIILHEYV 204 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~l~~~L 204 (654)
+|.|.|.+|.||||+|..+.... .. ..+++.-.+.++. +..+.|..............+ ... +...+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~--l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLD--LAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEeccccc--HHHHHHhhc
Confidence 68899999999999999887631 11 2234433344443 566666555444332111111 123 455555444
Q ss_pred cCCceEEEeccc
Q 048216 205 MTKRYLIVLDNF 216 (654)
Q Consensus 205 ~~kr~LiVLDDv 216 (654)
.+.. ++|+|.+
T Consensus 75 ~~~~-~VlID~L 85 (170)
T PRK05800 75 APGR-CVLVDCL 85 (170)
T ss_pred CCCC-EEEehhH
Confidence 3323 6888887
No 388
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.98 E-value=0.077 Score=49.45 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|.|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 389
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.98 E-value=0.14 Score=47.03 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=29.7
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccc
Q 048216 108 NRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 108 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
+.+++|.+.|.. +++.++|..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 457777777743 689999999999999999999853
No 390
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.97 E-value=0.12 Score=58.25 Aligned_cols=46 Identities=13% Similarity=-0.068 Sum_probs=38.0
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++||-+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999887652 345588999999999999988876
No 391
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.94 E-value=0.4 Score=47.39 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=54.0
Q ss_pred HHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---------
Q 048216 115 DLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL--------- 185 (654)
Q Consensus 115 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--------- 185 (654)
++|..+=+.-+++.|+|.+|+||||||.++... .++. =..++|++..+. ..++.+.+ ++++-...+
T Consensus 16 ~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i 90 (234)
T PRK06067 16 RKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRI 90 (234)
T ss_pred HhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceE
Confidence 334334345689999999999999999887432 2222 246778877654 34454443 223211100
Q ss_pred -------c--cccccChHHHHHHHHHHHcC-CceEEEeccc
Q 048216 186 -------S--EIMKESSEMKKIILHEYVMT-KRYLIVLDNF 216 (654)
Q Consensus 186 -------~--~~~~~~~~~~~~~l~~~L~~-kr~LiVLDDv 216 (654)
. ...+.+. +...+.+.+.. +.-++|+|.+
T Consensus 91 ~~~~~~~~~~~~~~~~~--ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 91 FPLNTEGFEWNSTLANK--LLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred EeccccccccCcchHHH--HHHHHHHHHHhcCCCEEEEecH
Confidence 0 0011123 55666666653 4558999986
No 392
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.93 E-value=0.09 Score=50.94 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++++|+++|..|+|||||.+++.+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999998887
No 393
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.92 E-value=0.23 Score=51.90 Aligned_cols=65 Identities=23% Similarity=0.126 Sum_probs=47.3
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHH
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYD 174 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 174 (654)
..++|.++.+..+...+..+ +-+-+.|.+|+|||+||+.+.. ... -...+|.........++.-.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~--~l~---~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALAR--ALG---LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHH--HhC---CCeEEEecCCCCCHHHhcCc
Confidence 34889888888887777776 3567899999999999999998 333 23345666666666665543
No 394
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.89 E-value=0.12 Score=58.09 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=39.2
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|.+..++.|.+.+..+. -..-+-++|..|+||||+|+.+.+
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999999987763 345688999999999999999987
No 395
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.89 E-value=0.4 Score=44.67 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=48.5
Q ss_pred EEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHcC
Q 048216 127 VAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMT 206 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 206 (654)
+-|.|..|.||||+|.+.... .....+++.-.+.+|. ++.+.|......... .+...+ ....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~---~w~t~E--~~~~l~~~l~~ 70 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPA---HWRTIE--TPRDLVSALKE 70 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCC---CceEee--cHHHHHHHHHh
Confidence 568999999999999887652 2245667777777766 455555554333322 222222 33445555532
Q ss_pred --CceEEEeccc
Q 048216 207 --KRYLIVLDNF 216 (654)
Q Consensus 207 --kr~LiVLDDv 216 (654)
+.-.|++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2337999987
No 396
>PRK09087 hypothetical protein; Validated
Probab=92.88 E-value=0.13 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-+.+.|||..|+|||+|++++++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999874
No 397
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.88 E-value=0.079 Score=47.35 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-.+++|+|..|.|||||.+.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 368999999999999999999873
No 398
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.87 E-value=0.51 Score=53.44 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=38.5
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|-+..++.|...+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999997762 345688999999999999988766
No 399
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.85 E-value=0.082 Score=49.74 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|+|..|.||||+++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999998
No 400
>PRK14527 adenylate kinase; Provisional
Probab=92.85 E-value=0.086 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
...+|.|+|.+|.||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999863
No 401
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.84 E-value=0.2 Score=47.91 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHcc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 402
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=92.84 E-value=0.32 Score=52.50 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.-..++|+|..|.|||||++.+.+.
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999873
No 403
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.83 E-value=0.22 Score=55.44 Aligned_cols=127 Identities=11% Similarity=0.048 Sum_probs=74.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHE 202 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 202 (654)
.-+|.-++|.+|+||||||..|+++.- | .++=|..|+.-.+..+-..|...+....- .+-
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~----l~a----------- 384 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSV----LDA----------- 384 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccc----ccc-----------
Confidence 458999999999999999999998432 2 12345556666665555555555443211 100
Q ss_pred HHcCCceEEEeccccCcccccccccCCCCceeEecCCchHHHHHHH-hhccc--cccchh-----ccC---C----Cchh
Q 048216 203 YVMTKRYLIVLDNFENGENIGLDFVPTRGPLRVTYKGWPFYILYHR-SISQK--ENIEEA-----LDE---P----RGLQ 267 (654)
Q Consensus 203 ~L~~kr~LiVLDDvw~G~~v~~~~~~~~~~~~v~c~GlPLai~~~g-~L~~~--~~~~~~-----l~~---~----~~~l 267 (654)
-++..-+|+|.+. |+.|-|+-++- ++..+ .....+ -.+ . .+++
T Consensus 385 --dsrP~CLViDEID--------------------Ga~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPII 442 (877)
T KOG1969|consen 385 --DSRPVCLVIDEID--------------------GAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPII 442 (877)
T ss_pred --CCCcceEEEeccc--------------------CCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEE
Confidence 1355668888872 45566677777 66633 000000 000 0 6677
Q ss_pred hhhhcCCchhHHHH--HhhhccCCCC
Q 048216 268 VVAYCMLPFYLKLF--CLYLSVFPVH 291 (654)
Q Consensus 268 ~~sy~~L~~~~k~c--fly~s~Fp~~ 291 (654)
-+|-|.--+.++.. |..|-.|+..
T Consensus 443 CICNdLYaPaLR~Lr~~A~ii~f~~p 468 (877)
T KOG1969|consen 443 CICNDLYAPALRPLRPFAEIIAFVPP 468 (877)
T ss_pred EEecCccchhhhhcccceEEEEecCC
Confidence 77777666666553 5556667543
No 404
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.83 E-value=0.097 Score=49.69 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.|+|..|+|||||++++.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999999987
No 405
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.82 E-value=0.38 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|++++|..|+||||++..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 347999999999999999988876
No 406
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=92.82 E-value=0.071 Score=50.35 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|+|.|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 407
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.80 E-value=0.17 Score=53.08 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+...++|-++..+.+...+..+. -...+-|+|..|+||||+|+.+.+
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 34579999999999999998763 345688999999999999988876
No 408
>PRK13695 putative NTPase; Provisional
Probab=92.78 E-value=0.096 Score=49.16 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 409
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.77 E-value=0.095 Score=53.86 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=19.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHH
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEA 144 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v 144 (654)
.+.+||++.|-||+||||.|..+
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NL 26 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNT 26 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHH
Confidence 46799999999999999976544
No 410
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.77 E-value=0.079 Score=43.74 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++.+.|.+|+||||+|..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999988876
No 411
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=92.76 E-value=0.44 Score=51.30 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=49.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESL-PYDADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-..++|.|..|.|||||.+.+.+.. . -+....+.+.. ..++.++..+....-.....- ....+...
T Consensus 144 ~Gq~~~I~G~sG~GKStLl~~I~~~~--~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~ 219 (422)
T TIGR02546 144 EGQRIGIFAGAGVGKSTLLGMIARGA--S--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKA 219 (422)
T ss_pred CCCEEEEECCCCCChHHHHHHHhCCC--C--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHH
Confidence 34678999999999999999999832 2 23334444444 344555554443322111110 01111111
Q ss_pred HHHHHHHHHHH--cCCceEEEeccc
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNF 216 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDv 216 (654)
......+.+++ +++++|+++||+
T Consensus 220 ~~~a~~~AE~f~~~g~~Vl~~~Dsl 244 (422)
T TIGR02546 220 AYTATAIAEYFRDQGKRVLLMMDSL 244 (422)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 00222334444 578999999999
No 412
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.74 E-value=0.018 Score=63.42 Aligned_cols=227 Identities=21% Similarity=0.142 Sum_probs=0.0
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCC-CCCCCCCCcCC----hhHHhcCCCceEEcCCCc-cccc--
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGS-LLNIPSLKSLP----SSLLSSLLNLYTLDMPFS-YIDH-- 469 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~lp~i~~lP----~~if~~L~~L~~L~L~~~-~l~~-- 469 (654)
++.++.|.+.++.... ..........++.|+.|++++ +. .+...+ ... ..+.+|+.|++++| .+..
T Consensus 187 ~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKIT--DDSLDALALKCPNLEELDLSGCCL---LITLSPLLLLLLL-SICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred CchhhHhhhcccccCC--hhhHHHHHhhCchhheecccCccc---ccccchhHhhhhh-hhcCCcCccchhhhhccCchh
Q ss_pred cChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeecCCCCC
Q 048216 470 TADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESKMPRRS 548 (654)
Q Consensus 470 lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~~~lp 548 (654)
+..-...+++|++|.+..+..+ ....+......+++|++|++++|...... .+..+....++| .|.+.+...
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~l-t~~gl~~i~~~~~~L~~L~l~~c~~~~d~---~l~~~~~~c~~l~~l~~~~~~~--- 333 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNL-TDEGLVSIAERCPSLRELDLSGCHGLTDS---GLEALLKNCPNLRELKLLSLNG--- 333 (482)
T ss_pred HHHHHhhCCCcceEccCCCCcc-chhHHHHHHHhcCcccEEeeecCccchHH---HHHHHHHhCcchhhhhhhhcCC---
Q ss_pred CcchhhhcCCCCccEEEEEeecc---CCCCccccccCcccceEEEeecccCCCeeEEcCCCCccc--------------c
Q 048216 549 NIILAEYQFPPSLTHLSFSNIEL---MDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKL--------------K 611 (654)
Q Consensus 549 ~~~~~~~~lp~~L~~L~L~~~~l---~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L--------------~ 611 (654)
- ..++.+.+..+.. .....-.+..+++|..+.|..+............++|.| +
T Consensus 334 c---------~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~ 404 (482)
T KOG1947|consen 334 C---------PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLR 404 (482)
T ss_pred C---------ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccc
Q ss_pred EEEEecCCCCcceeEcCcc--ccccceeeeecCcCCc
Q 048216 612 VLHLKSMLWLEEWTMGIRA--MPKLECLIINPCAHLK 646 (654)
Q Consensus 612 ~L~l~~~~~l~~l~~~~~~--~p~L~~L~i~~C~~L~ 646 (654)
.|.+..|.....-...... +.++..+.+.+|+.+.
T Consensus 405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred eEecccCccccccchHHHhhhhhccccCCccCccccc
No 413
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.73 E-value=0.6 Score=50.89 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCC
Q 048216 110 IEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESL 164 (654)
Q Consensus 110 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 164 (654)
+..+-++|..+=..-.++.|.|.+|+|||||+..+... ....=..+++++..+
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 44555555444345689999999999999999887552 222113466776543
No 414
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.70 E-value=0.082 Score=53.67 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=18.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|+|+|-||+||||+|..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5899999999999998765543
No 415
>PLN02200 adenylate kinase family protein
Probab=92.69 E-value=0.1 Score=51.59 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.|.|++|+||||+|+.+.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999887
No 416
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.68 E-value=0.084 Score=49.32 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.|.|+|+.|.||||+|+.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999988
No 417
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.68 E-value=0.34 Score=46.12 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=45.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCc--------ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-----cc----
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYF--------DCRAWVQESLPYDADQLLYDIIKLVMPSRRL-----SE---- 187 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~---- 187 (654)
.++.|+|.+|+||||++..+.-..--...| ..++|+..... ...+.+.+.......... ..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecccc
Confidence 588899999999999997776532222222 24667665444 444544444333222110 00
Q ss_pred -----------ccccChHHHHHHHHHHHcC--CceEEEecccc
Q 048216 188 -----------IMKESSEMKKIILHEYVMT--KRYLIVLDNFE 217 (654)
Q Consensus 188 -----------~~~~~~~~~~~~l~~~L~~--kr~LiVLDDvw 217 (654)
...... ..+.+.+.++. +--+||+|.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~lvviD~l~ 151 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDE--DLEELEAALKELYGPDLVVIDPLQ 151 (193)
T ss_dssp -EE---TTS---TTSHH--HHHHHHHHHTT----SEEEEE-GG
T ss_pred ccceeeecccccccchH--HHHHHHHHHhhcCCCcEEEEcCHH
Confidence 000122 44556666655 45699999983
No 418
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.68 E-value=0.69 Score=43.57 Aligned_cols=89 Identities=10% Similarity=0.109 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEE---eCCCCCHHHHHH------HHHHHhCCCCC---cccccc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQ---ESLPYDADQLLY------DIIKLVMPSRR---LSEIMK 190 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~------~i~~~l~~~~~---~~~~~~ 190 (654)
.-.+++|+|..|.|||||++.+.... ....+.+++. +. ..+...... ++++.++.... .....+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 34699999999999999999999732 2234444442 22 222222221 13444443211 012222
Q ss_pred cChHHHHHHHHHHHcCCceEEEeccc
Q 048216 191 ESSEMKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 191 ~~~~~~~~~l~~~L~~kr~LiVLDDv 216 (654)
..+ ...-.+.+.+....-+++||+-
T Consensus 100 ~G~-~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 100 GGE-RQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred HHH-HHHHHHHHHHhcCCCEEEEeCC
Confidence 222 0233455666777788999986
No 419
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.67 E-value=0.1 Score=48.15 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|+|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999887
No 420
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.65 E-value=0.17 Score=50.97 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=34.4
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP 165 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 165 (654)
+.-+++.|+|.+|.|||++|.+... +.......++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4678999999999999999977666 45555889999987654
No 421
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.65 E-value=0.29 Score=50.36 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=50.1
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc--c-cccccChHHHHH
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL--S-EIMKESSEMKKI 198 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~-~~~~~~~~~~~~ 198 (654)
+.-++|-|+|..|+||||||-.+.. +.+..-..++||.....+++.. +++++..... . .....++ ...
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~--al~ 121 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQ--ALW 121 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHH--HHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHH--HHH
Confidence 4568999999999999999988877 4444456788999888877643 3344433221 0 1111122 334
Q ss_pred HHHHHHc-CCceEEEeccc
Q 048216 199 ILHEYVM-TKRYLIVLDNF 216 (654)
Q Consensus 199 ~l~~~L~-~kr~LiVLDDv 216 (654)
.+...++ +..-+||+|-|
T Consensus 122 ~~e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 122 IAEQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHHHTTSESEEEEE-C
T ss_pred HHHHHhhcccccEEEEecC
Confidence 4444454 44568999998
No 422
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.64 E-value=0.095 Score=45.34 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHcc
Q 048216 127 VAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~~ 147 (654)
|+|+|+.|+|||||..++.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 423
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=92.64 E-value=0.27 Score=52.79 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-..++|+|..|+|||||++.+.+
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~ 197 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMAR 197 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhC
Confidence 457899999999999999999987
No 424
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.64 E-value=0.085 Score=48.87 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~ 146 (654)
|+|.|-.|.|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999997
No 425
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.63 E-value=0.085 Score=49.15 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHcc
Q 048216 127 VAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~~ 147 (654)
|.|.|..|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999873
No 426
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.62 E-value=0.092 Score=53.00 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=25.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEE
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQ 161 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 161 (654)
++|+|+|.+|+|||||+..+.. ..+... .++-|.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD--RLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhCC-CEEEEE
Confidence 6899999999999999999887 454443 344443
No 427
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.57 E-value=0.087 Score=53.28 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=18.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|+|.|-||+||||+|..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 5789999999999998866554
No 428
>PRK13768 GTPase; Provisional
Probab=92.54 E-value=0.1 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++.|.|.||+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 36889999999999998877665
No 429
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.51 E-value=0.16 Score=47.35 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=22.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
..++.|.|+.|+|||||+++++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999953
No 430
>PRK15453 phosphoribulokinase; Provisional
Probab=92.50 E-value=0.11 Score=52.06 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+..+|+|.|-.|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 431
>PLN02796 D-glycerate 3-kinase
Probab=92.48 E-value=0.27 Score=50.92 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..-+|||.|..|.||||||+.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 568899999999999999999987
No 432
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.48 E-value=0.099 Score=48.28 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHccccccCCc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSNYVKHYF 154 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 154 (654)
-|.++||-|+||||+.+++.+ ...-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 477899999999999999987 444444
No 433
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.47 E-value=0.089 Score=56.21 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-++.|+|+|..|.||||||+++.+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 434
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.46 E-value=0.45 Score=51.62 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=56.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhC--CC-----CCc--ccccccC
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVM--PS-----RRL--SEIMKES 192 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~--~~-----~~~--~~~~~~~ 192 (654)
.-.-++|.|-.|+|||||+..+.... .+.+=+.++++-+.+.- .+.++..++...-. .. ..- ....+..
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHH-HHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 34679999999999999998777631 11111677888887764 45667766655211 11 000 1112222
Q ss_pred h------HHHHHHHHHHHc--CC-ceEEEeccccC
Q 048216 193 S------EMKKIILHEYVM--TK-RYLIVLDNFEN 218 (654)
Q Consensus 193 ~------~~~~~~l~~~L~--~k-r~LiVLDDvw~ 218 (654)
. ....-.+.++++ ++ .+||++||+-.
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 1 003344677774 44 99999999943
No 435
>PRK08356 hypothetical protein; Provisional
Probab=92.45 E-value=0.12 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=19.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAY 145 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~ 145 (654)
..+|+|.|+.|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999993
No 436
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.43 E-value=0.081 Score=52.91 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|.++|++|+||||+|+.+.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999887
No 437
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.43 E-value=0.53 Score=48.70 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDII 176 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~ 176 (654)
-..++|.|..|+|||+|++.+.+.. .-+.++++-+.+.- .+.+++.++-
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 3589999999999999999999843 23567777777654 4445665543
No 438
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.41 E-value=0.28 Score=47.47 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=39.0
Q ss_pred CCCCCceechhhHHHHHHHHhc--CCCCcEEEEEEcCCCchHHHHHHHHHccccccCC
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE--GPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY 153 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 153 (654)
++-..++|.+..++.+++=-.. .+-...-|-.||--|.||++|+|++.+ ++...
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~ 112 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADE 112 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhc
Confidence 4445799999888888654322 122345677999999999999999998 44443
No 439
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.40 E-value=0.1 Score=46.74 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHccc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
+-|-++|..|.|||||++++-..+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999998754
No 440
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.37 E-value=0.14 Score=49.07 Aligned_cols=53 Identities=21% Similarity=0.099 Sum_probs=35.1
Q ss_pred echhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEE
Q 048216 105 GLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQ 161 (654)
Q Consensus 105 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 161 (654)
.+..+-...++.|.. ..++.+.|.+|.|||.||-+..-+.-..+.|+..+++.
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 345555666777763 46899999999999999987776544457788888764
No 441
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.35 E-value=0.17 Score=54.32 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=34.9
Q ss_pred CCceechhhHHHHHHHHhc-------C-------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIE-------G-------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~-------~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.+..++.+...+.. . .....-|-++|..|+|||++|+.+.+
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999988655521 1 01235688999999999999999987
No 442
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.35 E-value=0.16 Score=56.69 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=36.7
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
++++|.+..++.+...+.... ..-|-|+|..|+||||+|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999988775542 345678999999999999999863
No 443
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.34 E-value=0.067 Score=48.06 Aligned_cols=45 Identities=20% Similarity=0.120 Sum_probs=32.4
Q ss_pred eechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccc
Q 048216 104 VGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 104 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
||....++++.+.+..-...-.-|-|+|-.|.||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577777778877776532234567899999999999999999854
No 444
>PRK01184 hypothetical protein; Provisional
Probab=92.33 E-value=0.1 Score=49.43 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=17.2
Q ss_pred EEEEEEcCCCchHHHHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAE 143 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~ 143 (654)
.+|+|+|+.|+||||+|+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4899999999999999983
No 445
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.32 E-value=0.14 Score=49.13 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=45.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHH---HHHHHhCCCCCcccccccChHHHHHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLY---DIIKLVMPSRRLSEIMKESSEMKKIILH 201 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 201 (654)
.+|.|+|..|.||||+++.+.. .+......++++- .++.. .... .++.+- . . ..+... ..+.++
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~E--~~~~~~~~~i~q~----~-v-g~~~~~--~~~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPIE--FVHESKRSLINQR----E-V-GLDTLS--FENALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCcc--ccccCccceeeec----c-c-CCCccC--HHHHHH
Confidence 3789999999999999998877 3433334444432 22111 0000 011000 0 0 111233 566677
Q ss_pred HHHcCCceEEEeccccC
Q 048216 202 EYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 202 ~~L~~kr~LiVLDDvw~ 218 (654)
..+....=.|++|.+-+
T Consensus 69 ~aLr~~pd~ii~gEird 85 (198)
T cd01131 69 AALRQDPDVILVGEMRD 85 (198)
T ss_pred HHhcCCcCEEEEcCCCC
Confidence 77776666888888843
No 446
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=92.32 E-value=0.39 Score=51.92 Aligned_cols=88 Identities=13% Similarity=0.062 Sum_probs=50.3
Q ss_pred cEEEEEEcCCCchHHHHH-HHHHccccccCCccee-EEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh-----
Q 048216 124 LSVVAVLDSIGLDKTAFA-AEAYNSNYVKHYFDCR-AWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS----- 193 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~----- 193 (654)
-.-++|.|-.|+|||||| ..+.|.. .-|.. +++-+.+.. .+.++.+.+...=.....- ....+...
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 467899999999999995 5666631 23444 677777654 4555665555432111110 00111100
Q ss_pred -----HHHHHHHHHHHcCCceEEEecccc
Q 048216 194 -----EMKKIILHEYVMTKRYLIVLDNFE 217 (654)
Q Consensus 194 -----~~~~~~l~~~L~~kr~LiVLDDvw 217 (654)
.-+++.++. +||.+|||+||+-
T Consensus 217 ap~~a~aiAEyfr~--~G~~VLlv~DdlT 243 (485)
T CHL00059 217 APYTGAALAEYFMY--RGRHTLIIYDDLS 243 (485)
T ss_pred HHHHHhhHHHHHHH--cCCCEEEEEcChh
Confidence 003344443 5899999999993
No 447
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=92.31 E-value=0.45 Score=51.08 Aligned_cols=40 Identities=5% Similarity=-0.022 Sum_probs=28.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY 166 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 166 (654)
.-..++|+|..|+|||||++.+..... -+..+...+.+..
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGerg 195 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERG 195 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccc
Confidence 346899999999999999999987321 2334444455544
No 448
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.30 E-value=0.14 Score=53.43 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=38.3
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+-+.+||-++.+..|...+.+. .+.-|-|.|..|.||||+|+.+++
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 34567999999888888777665 344566999999999999999976
No 449
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.26 E-value=0.11 Score=50.01 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|+|.|+.|+||||+++.+.+
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 450
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.25 E-value=0.57 Score=49.67 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=56.1
Q ss_pred CCceechhh-HHHHHHHHhc-CCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHH
Q 048216 101 RDTVGLDNR-IEELLDLLIE-GPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKL 178 (654)
Q Consensus 101 ~~~vGr~~~-~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 178 (654)
.-++|-... ...+...+.. .+.....+-|||..|.|||-|++++.| ...........+.+ .......+.+..
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a 161 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKA 161 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHH
Confidence 345564322 2333333333 233578899999999999999999999 55555553333433 333444444444
Q ss_pred hCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccccC
Q 048216 179 VMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~ 218 (654)
+... -...+++.. .-=++++||++.
T Consensus 162 ~~~~-------------~~~~Fk~~y--~~dlllIDDiq~ 186 (408)
T COG0593 162 LRDN-------------EMEKFKEKY--SLDLLLIDDIQF 186 (408)
T ss_pred HHhh-------------hHHHHHHhh--ccCeeeechHhH
Confidence 4321 233445544 333778888866
No 451
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.22 E-value=0.1 Score=53.78 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=18.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|-+.|-||+||||+|.+..-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 6788999999999999965543
No 452
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.20 E-value=0.1 Score=47.90 Aligned_cols=23 Identities=9% Similarity=0.210 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|++|+|+-|.|||||...+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 47999999999999999998876
No 453
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.19 E-value=0.12 Score=53.35 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+++|.+|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999988876
No 454
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.19 E-value=0.1 Score=49.80 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~ 146 (654)
|.|.|++|+||||+|+.+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 455
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.16 E-value=0.027 Score=55.25 Aligned_cols=77 Identities=22% Similarity=0.240 Sum_probs=59.7
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccCh--hhh
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTAD--EFW 475 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~--~i~ 475 (654)
+.+++.|.+.++.... -.+..+|+.|.||.||-| .|++|-. + ..+++|+.|.|+.|.|..+-+ -+.
T Consensus 18 l~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvN----kIssL~p-l-~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVN----KISSLAP-L-QRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccH------HHHHHhcccceeEEeecc----ccccchh-H-HHHHHHHHHHHHhcccccHHHHHHHh
Confidence 4567778888877642 356789999999999999 8888853 5 889999999999997776643 356
Q ss_pred ccccccceecc
Q 048216 476 KVSKLRYLNFG 486 (654)
Q Consensus 476 ~L~~L~~L~l~ 486 (654)
+|++||.|-|.
T Consensus 86 nlpsLr~LWL~ 96 (388)
T KOG2123|consen 86 NLPSLRTLWLD 96 (388)
T ss_pred cCchhhhHhhc
Confidence 88888888764
No 456
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=92.15 E-value=0.11 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-|+|+|.+|+|||||++.+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998875
No 457
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=92.12 E-value=0.13 Score=47.30 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHccc
Q 048216 127 VAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~~~ 148 (654)
|.++|.+|+|||||+..+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999988753
No 458
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.12 E-value=0.1 Score=46.43 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..-|-|.|.+|+||||+|.++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 34578999999999999999986
No 459
>PLN02165 adenylate isopentenyltransferase
Probab=92.09 E-value=0.12 Score=53.17 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.-.+|+|+|+.|+||||||..+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999999999999999998873
No 460
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=92.05 E-value=0.2 Score=47.05 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.-||||-|+.-.||||||+....
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~ 26 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHR 26 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHH
Confidence 356899999999999999997765
No 461
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.02 E-value=0.14 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-|.|+|.+|+|||||++++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 462
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.02 E-value=0.12 Score=50.19 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||++.+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999997
No 463
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.01 E-value=0.2 Score=54.59 Aligned_cols=46 Identities=17% Similarity=0.054 Sum_probs=38.5
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3579999999999999997652 336678899999999999988876
No 464
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=91.99 E-value=0.56 Score=46.98 Aligned_cols=105 Identities=19% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEE-EEeCCCCCHHHHHHHHHHH
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAW-VQESLPYDADQLLYDIIKL 178 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i~~~ 178 (654)
.++++|-.. ..++..++......-+.+.|+|+.|+|||+-++..++.. ...| ++-+..|....++..+...
T Consensus 71 ~~~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 71 APDFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred cccccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHHH
Confidence 345665443 334455554443344588899999999999999998831 2344 4567777877777777777
Q ss_pred hCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccccC
Q 048216 179 VMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~ 218 (654)
...... ....+ ....+..++++..=+|+.|..-.
T Consensus 143 ~~~~~~----~~~~d--~~~~~~~~l~~~~~~iivDEA~~ 176 (297)
T COG2842 143 AFGATD----GTIND--LTERLMIRLRDTVRLIIVDEADR 176 (297)
T ss_pred Hhcccc----hhHHH--HHHHHHHHHccCcceeeeehhhc
Confidence 766533 22334 56667777788888888888654
No 465
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=91.98 E-value=0.2 Score=51.77 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..-..|.++||.|.||||+|+.+.+
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 466
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.98 E-value=0.12 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||++.+..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 467
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.97 E-value=0.78 Score=46.36 Aligned_cols=54 Identities=9% Similarity=-0.041 Sum_probs=36.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCC-cceeEEEEeCCCCCHHHHHHHHHHHhC
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY-FDCRAWVQESLPYDADQLLYDIIKLVM 180 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~ 180 (654)
.-.++.|.|.+|+||||+|.++... .... =..++|++... ...++.+.+...+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 3468889999999999999887662 2222 23567877544 45666766665543
No 468
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.96 E-value=0.19 Score=48.87 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=26.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEE
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWV 160 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 160 (654)
-.+++|+|..|.|||||++.+..- . ....+.+++
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl--~-~~~~G~i~~ 61 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA--L-TPSRGQVRI 61 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCceEEE
Confidence 469999999999999999999873 2 233555554
No 469
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.94 E-value=0.09 Score=52.01 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=17.1
Q ss_pred EEcCCCchHHHHHHHHHccc
Q 048216 129 VLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 129 I~G~gGiGKTtLA~~v~~~~ 148 (654)
|+|++|+||||+++.+.+.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998843
No 470
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.93 E-value=0.13 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999986
No 471
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=91.92 E-value=0.27 Score=45.17 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=29.9
Q ss_pred echhhHHHHHHHHhcC-CCCcEEEEEEcCCCchHHHHHHHHHccc
Q 048216 105 GLDNRIEELLDLLIEG-PPQLSVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 105 Gr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
|.++-++.|.+.+... ......|+++|++|+|||||...+..+.
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4455555555544321 1234568899999999999999998754
No 472
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.92 E-value=0.12 Score=52.47 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=17.9
Q ss_pred EEEEEEcCCCchHHHHHHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEAY 145 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~ 145 (654)
++|+|.|-||+||||+|..+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA 23 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTA 23 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHH
Confidence 689999999999999886443
No 473
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.90 E-value=0.2 Score=48.55 Aligned_cols=35 Identities=11% Similarity=-0.049 Sum_probs=26.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEE
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWV 160 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 160 (654)
.-.+++|+|..|.|||||++.+.... ....+.+++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~ 59 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLF 59 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 34689999999999999999999732 223455554
No 474
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=91.88 E-value=0.15 Score=46.08 Aligned_cols=23 Identities=4% Similarity=0.202 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHccc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
-|+++|..|+|||||+.++....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 475
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.86 E-value=0.12 Score=47.17 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|++.|.+|+||||+++.+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999988876
No 476
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=91.85 E-value=0.17 Score=52.57 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=35.6
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+-..++|.++.++.+.-.+... +..-+-+.|..|.||||+|+.+.+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~--~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDP--GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhcc--CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999887655432 233488999999999999999865
No 477
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.84 E-value=0.11 Score=52.68 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|||.|..|+|||||++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 478
>PHA02244 ATPase-like protein
Probab=91.81 E-value=0.27 Score=51.26 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 110 IEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 110 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+..++..+ .-|-|+|..|+|||+||+++..
T Consensus 109 ~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 109 TADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred HHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHH
Confidence 34444444433 2366799999999999999998
No 479
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=91.80 E-value=0.12 Score=52.42 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.5
Q ss_pred EEEEEEcCCCchHHHHHHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEAY 145 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~ 145 (654)
++|+|+|-||+||||+|..+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA 22 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTV 22 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHH
Confidence 689999999999999775543
No 480
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=91.79 E-value=0.6 Score=52.37 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 99 KDRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
....++|....+.++++.+..-...-.-|-|+|..|.|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999998888653223345679999999999999999984
No 481
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.79 E-value=0.15 Score=48.22 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.|.|..|.||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 482
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=91.79 E-value=0.13 Score=49.66 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|+|+||.|+||+|+|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999998865
No 483
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=91.76 E-value=0.13 Score=50.72 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=27.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDAD 169 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 169 (654)
+.|+|+|-|||||+|.|..+.- .....-..++-|-...+.|..
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsa--ala~~G~kVl~iGCDPK~DST 43 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSA--ALAEMGKKVLQIGCDPKADST 43 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESSSSTSS
T ss_pred CeEEEEcCCCcccChhhhHHHH--HHHhccceeeEecccCCCccc
Confidence 5799999999999999876654 222223345556555554443
No 484
>PRK14532 adenylate kinase; Provisional
Probab=91.75 E-value=0.12 Score=49.05 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~ 146 (654)
|.|.|++|+||||+|+.+.+
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 485
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.74 E-value=0.13 Score=50.12 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999998
No 486
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=91.73 E-value=0.11 Score=49.55 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+|+|-|+.|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999873
No 487
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=91.73 E-value=0.16 Score=46.47 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..+|+++|..|+|||||++.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998764
No 488
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=91.69 E-value=0.13 Score=52.88 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=18.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|+|+|-||+||||+|..+..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~ 22 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSH 22 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999998866655
No 489
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.69 E-value=0.16 Score=48.28 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=26.3
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 109 RIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 109 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+..++.+..... -..+.|+|..|.||||+++.+..
T Consensus 13 ~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 13 LQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh
Confidence 344444444443 36899999999999999999887
No 490
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.69 E-value=0.22 Score=48.73 Aligned_cols=34 Identities=21% Similarity=0.036 Sum_probs=26.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEE
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWV 160 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 160 (654)
-.+++|+|..|.|||||.+.+..- .....+.+++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~---~~~~~G~i~~ 59 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL---LKPTSGRATV 59 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 478999999999999999999973 2234555554
No 491
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=91.69 E-value=0.33 Score=46.75 Aligned_cols=50 Identities=10% Similarity=-0.088 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDI 175 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 175 (654)
...|+|=|+-|+||||.++.+++ ......-.++|..-.....+.+..+++
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~~ 52 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIREL 52 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHHH
Confidence 46799999999999999999998 555444345555433333333444443
No 492
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=91.68 E-value=0.16 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHcc
Q 048216 127 VAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~~ 147 (654)
|.|+|..|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
No 493
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.66 E-value=0.15 Score=49.65 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
. .+++|+|..|.|||||++.+..
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhC
Confidence 5 8999999999999999999987
No 494
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.66 E-value=0.067 Score=52.37 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=53.1
Q ss_pred CCCCeEEEeccCCccc--chhhhcccccCCCCCe-EEEEeecCCC------CCCcchhhhcCCCCccEEEEEeeccCCCC
Q 048216 505 NFISALHHCYCTEDIL--GRLLVQILILSCLESL-KLANESKMPR------RSNIILAEYQFPPSLTHLSFSNIELMDDP 575 (654)
Q Consensus 505 ~~L~~L~l~~~~~~~~--~~~~~l~~l~~~~~~L-~L~l~~~~~~------lp~~~~~~~~lp~~L~~L~L~~~~l~~~~ 575 (654)
.+|+++.+..|....- . .-.+..+..+. +| .|++..+.-. +.. .+... +.|+.|.+.+|-++...
T Consensus 185 ~~lk~vki~qNgIrpegv~-~L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~---al~~W-~~lrEL~lnDClls~~G 258 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVT-MLAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLAD---ALCEW-NLLRELRLNDCLLSNEG 258 (388)
T ss_pred cCceeEEeeecCcCcchhH-HHHHHHHHHhC-cceeeeccccchhhhhHHHHHH---Hhccc-chhhhccccchhhcccc
Confidence 5666666666643210 0 00233444455 66 6666543211 001 11223 66788888888765544
Q ss_pred cccc------ccCcccceEEEeecccCCCeeEE------cCCCCccccEEEEec
Q 048216 576 MPAL------EKLPVLQVLKLKQNSYSGRKLAC------SSDGFPKLKVLHLKS 617 (654)
Q Consensus 576 l~~l------~~l~~L~~L~L~~~~~~~~~l~~------~~~~f~~L~~L~l~~ 617 (654)
...+ ...|+|..|....|...+..+.. ..+..|-|..|.+.+
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 3321 13577777777755444333322 123466666666665
No 495
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.65 E-value=0.69 Score=45.55 Aligned_cols=48 Identities=10% Similarity=0.209 Sum_probs=30.7
Q ss_pred CcEEEEEEcCCCchHHHHHH-HHHccccccCCcceeEEEEeCCCCCHHHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAA-EAYNSNYVKHYFDCRAWVQESLPYDADQLLYDI 175 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~-~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 175 (654)
.-.++.|.|..|.||||+|. .+++ -.+.. ..+++++ -.-+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~--~~~~g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG--FLQNG-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhCC-CcEEEEe--CCCCHHHHHHHH
Confidence 45699999999999999974 4554 22222 3345555 333455666665
No 496
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.64 E-value=0.14 Score=48.80 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||++.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 497
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.63 E-value=0.15 Score=47.94 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46999999999999999999987
No 498
>PRK04328 hypothetical protein; Provisional
Probab=91.63 E-value=0.53 Score=46.98 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=32.3
Q ss_pred HHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC
Q 048216 115 DLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP 165 (654)
Q Consensus 115 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 165 (654)
++|..+=..-+++-|.|.+|.|||+||.+.... ..+. =+..+|++..+.
T Consensus 14 ~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyis~ee~ 62 (249)
T PRK04328 14 EILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYVALEEH 62 (249)
T ss_pred HHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEEEeeCC
Confidence 334333245689999999999999999775431 2222 356778876553
No 499
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.63 E-value=0.14 Score=44.38 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 048216 127 VAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 127 i~I~G~gGiGKTtLA~~v~~ 146 (654)
|.+.|.||+||||+|..+.+
T Consensus 2 i~~~GkgG~GKTt~a~~la~ 21 (116)
T cd02034 2 IAITGKGGVGKTTIAALLAR 21 (116)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998887
No 500
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=91.62 E-value=0.26 Score=52.66 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=35.8
Q ss_pred CCCceechhhHHHHHHHHh-------c---CC--C----CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLI-------E---GP--P----QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...++|.++.++.+...+. . .. + ....|-++|..|+|||++|+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 3468999999998876652 1 11 1 125788999999999999999987
Done!