Query 048216
Match_columns 654
No_of_seqs 496 out of 4265
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 12:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.8E-42 2.3E-46 381.2 19.3 250 104-363 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.5E-33 1.2E-37 315.6 12.5 239 103-355 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-31 4E-36 328.1 21.8 252 98-361 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.4E-28 2.2E-32 271.9 19.9 247 99-359 122-450 (591)
5 4fcg_A Uncharacterized protein 99.8 2E-20 6.7E-25 194.6 14.9 219 398-640 80-309 (328)
6 4fcg_A Uncharacterized protein 99.8 3.3E-20 1.1E-24 192.9 13.5 213 425-653 79-298 (328)
7 3o6n_A APL1; leucine-rich repe 99.8 2.2E-18 7.7E-23 183.6 15.0 253 376-649 44-334 (390)
8 3oja_B Anopheles plasmodium-re 99.8 1.2E-18 4.1E-23 196.2 13.0 253 377-649 51-340 (597)
9 1ogq_A PGIP-2, polygalacturona 99.8 8.3E-19 2.8E-23 181.1 9.6 248 377-650 50-309 (313)
10 2id5_A Lingo-1, leucine rich r 99.7 8.6E-18 2.9E-22 184.0 15.7 256 375-650 30-313 (477)
11 1xku_A Decorin; proteoglycan, 99.7 1.3E-17 4.4E-22 173.5 13.4 241 376-644 51-305 (330)
12 3v47_A TOLL-like receptor 5B a 99.7 1.7E-17 5.6E-22 180.5 12.4 129 375-515 28-164 (455)
13 2id5_A Lingo-1, leucine rich r 99.7 7.8E-17 2.7E-21 176.4 17.0 188 387-594 20-211 (477)
14 1ogq_A PGIP-2, polygalacturona 99.7 1.2E-17 4.1E-22 172.4 9.7 230 399-651 50-287 (313)
15 4eco_A Uncharacterized protein 99.7 4.2E-17 1.4E-21 184.9 14.7 245 376-641 248-545 (636)
16 2z66_A Variable lymphocyte rec 99.7 1.5E-17 5.1E-22 171.0 9.8 226 393-642 22-258 (306)
17 3zyi_A Leucine-rich repeat-con 99.7 3.9E-17 1.3E-21 177.5 13.5 238 381-643 58-301 (452)
18 4ecn_A Leucine-rich repeat pro 99.7 5.6E-17 1.9E-21 187.9 15.5 257 376-653 490-803 (876)
19 3zyj_A Leucine-rich repeat-con 99.7 5E-17 1.7E-21 176.0 14.0 238 381-643 47-290 (440)
20 3rgz_A Protein brassinosteroid 99.7 1.7E-17 5.7E-22 192.4 10.3 260 376-653 268-559 (768)
21 3rgz_A Protein brassinosteroid 99.7 3.9E-17 1.3E-21 189.4 13.1 91 559-650 632-722 (768)
22 2ft3_A Biglycan; proteoglycan, 99.7 4.8E-17 1.6E-21 169.3 11.8 241 376-645 53-307 (332)
23 3o6n_A APL1; leucine-rich repe 99.7 1.1E-16 3.6E-21 170.6 14.6 233 398-652 44-314 (390)
24 2z80_A TOLL-like receptor 2, v 99.7 3.7E-17 1.3E-21 171.7 10.7 247 376-644 51-313 (353)
25 4eco_A Uncharacterized protein 99.7 3.4E-17 1.2E-21 185.6 9.9 249 377-651 305-584 (636)
26 4ecn_A Leucine-rich repeat pro 99.7 1.2E-16 4.2E-21 185.0 13.5 250 376-652 514-825 (876)
27 3vq2_A TLR4, TOLL-like recepto 99.7 2.9E-16 1E-20 177.1 16.0 130 375-517 30-165 (606)
28 2z81_A CD282 antigen, TOLL-lik 99.7 7.8E-17 2.7E-21 179.5 11.0 133 376-519 25-162 (549)
29 3t6q_A CD180 antigen; protein- 99.7 1.2E-16 4.1E-21 180.3 12.4 252 375-642 31-386 (606)
30 3oja_B Anopheles plasmodium-re 99.7 2E-16 6.8E-21 178.1 14.0 231 398-652 50-320 (597)
31 4fmz_A Internalin; leucine ric 99.7 1E-15 3.6E-20 160.1 17.8 194 423-647 106-301 (347)
32 2ft3_A Biglycan; proteoglycan, 99.7 2.6E-16 9E-21 163.7 12.8 243 379-650 35-281 (332)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.3E-16 1.5E-20 174.2 15.1 101 375-487 50-155 (562)
34 1o6v_A Internalin A; bacterial 99.7 1.2E-15 4.3E-20 166.3 18.3 244 377-649 46-325 (466)
35 3t6q_A CD180 antigen; protein- 99.7 4E-16 1.4E-20 176.0 14.8 244 378-642 255-510 (606)
36 1xku_A Decorin; proteoglycan, 99.7 5E-16 1.7E-20 161.4 14.3 247 378-651 32-281 (330)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.3E-15 4.5E-20 170.2 17.5 124 379-517 33-158 (562)
38 1ozn_A Reticulon 4 receptor; N 99.6 2.6E-16 9E-21 159.9 10.7 205 393-618 26-235 (285)
39 2z7x_B TOLL-like receptor 1, v 99.6 1.6E-15 5.4E-20 167.9 17.9 124 376-517 20-150 (520)
40 4fmz_A Internalin; leucine ric 99.6 3E-15 1E-19 156.5 17.9 237 376-650 87-328 (347)
41 3vq2_A TLR4, TOLL-like recepto 99.6 4.1E-16 1.4E-20 176.0 11.9 240 378-644 308-557 (606)
42 3zyi_A Leucine-rich repeat-con 99.6 4.6E-16 1.6E-20 169.1 11.8 221 375-619 73-301 (452)
43 3zyj_A Leucine-rich repeat-con 99.6 6.4E-16 2.2E-20 167.3 12.9 221 375-619 62-290 (440)
44 2z63_A TOLL-like receptor 4, v 99.6 1.3E-15 4.4E-20 170.4 15.4 130 375-516 26-160 (570)
45 3v47_A TOLL-like receptor 5B a 99.6 9.8E-16 3.4E-20 166.5 13.6 101 377-486 54-162 (455)
46 3j0a_A TOLL-like receptor 5; m 99.6 1.7E-15 5.8E-20 177.4 16.3 131 375-516 22-159 (844)
47 1o6v_A Internalin A; bacterial 99.6 2.5E-15 8.6E-20 163.9 16.4 239 375-649 66-347 (466)
48 2z7x_B TOLL-like receptor 1, v 99.6 1.4E-15 4.6E-20 168.4 14.5 96 376-486 44-146 (520)
49 1ozn_A Reticulon 4 receptor; N 99.6 8.1E-16 2.8E-20 156.3 11.3 201 426-643 31-236 (285)
50 2z66_A Variable lymphocyte rec 99.6 5.6E-16 1.9E-20 159.2 9.1 225 375-619 26-259 (306)
51 2z80_A TOLL-like receptor 2, v 99.6 1.8E-15 6.1E-20 158.8 12.4 223 376-618 75-311 (353)
52 1h6u_A Internalin H; cell adhe 99.6 2.7E-15 9.1E-20 154.3 13.4 192 398-625 40-233 (308)
53 3bz5_A Internalin-J, INLJ; leu 99.6 5.4E-15 1.9E-19 160.5 16.4 231 377-650 42-304 (457)
54 3j0a_A TOLL-like receptor 5; m 99.6 8E-15 2.7E-19 171.7 17.6 136 391-542 17-157 (844)
55 1ziw_A TOLL-like receptor 3; i 99.6 3.9E-15 1.3E-19 170.3 14.6 131 375-517 23-157 (680)
56 2o6q_A Variable lymphocyte rec 99.6 8E-15 2.7E-19 147.7 14.9 199 377-595 16-217 (270)
57 2z63_A TOLL-like receptor 4, v 99.6 8.6E-16 2.9E-20 171.8 8.0 100 377-486 52-157 (570)
58 3o53_A Protein LRIM1, AGAP0063 99.6 2.6E-15 8.9E-20 155.1 10.5 213 398-644 33-249 (317)
59 3rfs_A Internalin B, repeat mo 99.6 5.7E-15 2E-19 149.0 12.5 203 398-631 40-245 (272)
60 2z62_A TOLL-like receptor 4, v 99.6 2.9E-15 1E-19 151.4 10.2 199 398-640 27-232 (276)
61 3bz5_A Internalin-J, INLJ; leu 99.6 1.4E-14 4.8E-19 157.2 16.2 199 398-641 41-242 (457)
62 2z81_A CD282 antigen, TOLL-lik 99.6 4.7E-15 1.6E-19 165.1 12.1 163 391-573 18-210 (549)
63 3oja_A Leucine-rich immune mol 99.6 3.8E-15 1.3E-19 163.1 10.6 221 398-652 33-258 (487)
64 3oja_A Leucine-rich immune mol 99.6 2E-15 6.9E-20 165.3 8.3 92 554-651 140-232 (487)
65 1ziw_A TOLL-like receptor 3; i 99.6 1.7E-14 5.9E-19 164.9 15.5 179 391-588 17-200 (680)
66 4g8a_A TOLL-like receptor 4; l 99.6 8.2E-15 2.8E-19 165.8 11.9 107 375-486 50-181 (635)
67 3g06_A SSPH2 (leucine-rich rep 99.6 3.8E-14 1.3E-18 158.8 16.9 217 377-643 61-295 (622)
68 3rfs_A Internalin B, repeat mo 99.5 2E-14 6.8E-19 145.0 12.1 205 423-653 37-243 (272)
69 3g06_A SSPH2 (leucine-rich rep 99.5 5.7E-14 1.9E-18 157.4 16.6 223 378-653 41-281 (622)
70 2o6q_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 142.9 13.3 196 399-619 16-216 (270)
71 2xwt_C Thyrotropin receptor; s 99.5 7.5E-15 2.6E-19 145.1 8.0 199 428-645 32-239 (239)
72 1wwl_A Monocyte differentiatio 99.5 3.7E-15 1.3E-19 153.6 5.6 200 425-642 93-306 (312)
73 1p9a_G Platelet glycoprotein I 99.5 3.6E-14 1.2E-18 144.4 12.6 194 398-617 9-204 (290)
74 3o53_A Protein LRIM1, AGAP0063 99.5 6.5E-15 2.2E-19 152.1 7.0 235 378-647 35-277 (317)
75 1h6u_A Internalin H; cell adhe 99.5 6.1E-14 2.1E-18 144.1 13.3 188 376-597 40-231 (308)
76 2z62_A TOLL-like receptor 4, v 99.5 1.1E-13 3.8E-18 139.7 12.3 204 375-596 26-237 (276)
77 2ast_B S-phase kinase-associat 99.5 1.1E-15 3.7E-20 159.1 -3.2 181 425-618 91-282 (336)
78 1p9a_G Platelet glycoprotein I 99.5 2.2E-13 7.7E-18 138.6 13.4 195 377-595 10-207 (290)
79 2ast_B S-phase kinase-associat 99.5 5.2E-15 1.8E-19 153.9 0.6 207 420-642 61-282 (336)
80 2xwt_C Thyrotropin receptor; s 99.5 6.2E-14 2.1E-18 138.4 8.0 201 393-620 26-238 (239)
81 1h6t_A Internalin B; cell adhe 99.5 2.5E-13 8.6E-18 138.3 12.0 167 423-618 42-210 (291)
82 1jl5_A Outer protein YOPM; leu 99.4 8.2E-13 2.8E-17 143.2 16.6 105 399-520 131-252 (454)
83 1wwl_A Monocyte differentiatio 99.4 1.4E-13 4.6E-18 141.8 7.6 198 398-618 94-306 (312)
84 1jl5_A Outer protein YOPM; leu 99.4 2.5E-12 8.6E-17 139.4 17.1 201 375-624 89-292 (454)
85 4ezg_A Putative uncharacterize 99.4 4.2E-13 1.5E-17 128.3 9.7 149 424-594 41-192 (197)
86 2ca6_A RAN GTPase-activating p 99.4 1.3E-14 4.3E-19 154.3 -1.1 232 398-642 31-313 (386)
87 1m9s_A Internalin B; cell inva 99.4 3.7E-13 1.3E-17 150.6 10.7 167 423-618 39-207 (605)
88 4ay9_X Follicle-stimulating ho 99.4 7.1E-13 2.4E-17 138.7 10.9 230 387-641 18-255 (350)
89 4ay9_X Follicle-stimulating ho 99.4 4.8E-13 1.6E-17 140.1 8.9 223 402-650 12-241 (350)
90 3m19_A Variable lymphocyte rec 99.4 2.1E-12 7.2E-17 128.4 13.0 173 380-595 17-191 (251)
91 4glp_A Monocyte differentiatio 99.4 8.6E-13 2.9E-17 135.7 10.2 198 398-617 90-303 (310)
92 4glp_A Monocyte differentiatio 99.4 2.3E-13 8E-18 139.9 5.5 225 398-643 63-305 (310)
93 3m19_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 127.1 12.5 173 428-619 15-190 (251)
94 1h6t_A Internalin B; cell adhe 99.4 3.9E-12 1.3E-16 129.5 13.1 165 398-594 45-211 (291)
95 3cvr_A Invasion plasmid antige 99.3 1.7E-12 5.7E-17 143.8 9.6 182 428-652 60-250 (571)
96 2o6s_A Variable lymphocyte rec 99.3 4.4E-12 1.5E-16 122.2 9.0 112 393-516 22-135 (208)
97 3goz_A Leucine-rich repeat-con 99.3 7.1E-13 2.4E-17 139.4 3.5 210 376-594 21-264 (362)
98 4g8a_A TOLL-like receptor 4; l 99.3 3.3E-12 1.1E-16 144.4 8.4 182 391-591 44-232 (635)
99 1m9s_A Internalin B; cell inva 99.3 1.1E-11 3.8E-16 138.6 11.6 155 398-582 64-220 (605)
100 1xeu_A Internalin C; cellular 99.3 2.7E-12 9.3E-17 128.6 6.0 149 422-597 36-186 (263)
101 1xeu_A Internalin C; cellular 99.3 1.8E-11 6.2E-16 122.5 11.9 149 398-577 40-190 (263)
102 2o6s_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 118.7 10.5 162 426-633 27-190 (208)
103 2ca6_A RAN GTPase-activating p 99.3 2.3E-13 8E-18 144.4 -2.3 250 377-640 32-338 (386)
104 3ogk_B Coronatine-insensitive 99.3 8.3E-13 2.8E-17 148.3 2.0 157 398-567 163-350 (592)
105 1z7x_W Ribonuclease inhibitor; 99.3 2.1E-13 7.1E-18 148.2 -2.9 85 398-486 27-121 (461)
106 1dce_A Protein (RAB geranylger 99.3 6.9E-14 2.4E-18 155.5 -7.0 196 424-638 346-566 (567)
107 3ogk_B Coronatine-insensitive 99.2 1.4E-12 4.6E-17 146.5 2.0 223 376-616 111-350 (592)
108 4b8c_D Glucose-repressible alc 99.2 2.6E-12 8.9E-17 147.2 4.1 151 376-542 172-325 (727)
109 3goz_A Leucine-rich repeat-con 99.2 5.6E-13 1.9E-17 140.2 -1.5 240 398-643 21-295 (362)
110 3e6j_A Variable lymphocyte rec 99.2 5.6E-11 1.9E-15 116.3 12.0 129 427-595 40-171 (229)
111 4ezg_A Putative uncharacterize 99.2 3.9E-11 1.3E-15 114.5 10.2 147 398-571 43-193 (197)
112 1z7x_W Ribonuclease inhibitor; 99.2 1.1E-12 3.9E-17 142.4 -1.1 110 398-518 2-126 (461)
113 2v9t_B SLIT homolog 2 protein 99.2 5.6E-11 1.9E-15 115.6 11.0 147 430-595 14-164 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.2 8E-11 2.7E-15 114.5 10.0 145 431-595 15-165 (220)
115 2xot_A Amphoterin-induced prot 99.2 3.2E-11 1.1E-15 126.6 7.4 128 381-520 22-151 (361)
116 3e6j_A Variable lymphocyte rec 99.1 1.3E-10 4.5E-15 113.7 10.7 150 382-574 24-174 (229)
117 1dce_A Protein (RAB geranylger 99.1 9.6E-13 3.3E-17 146.3 -5.3 188 452-652 346-552 (567)
118 3cvr_A Invasion plasmid antige 99.1 2.3E-10 7.7E-15 126.7 12.2 174 378-595 60-242 (571)
119 2p1m_B Transport inhibitor res 99.1 4.9E-12 1.7E-16 142.0 -1.7 13 631-643 455-467 (594)
120 2xot_A Amphoterin-induced prot 99.1 1E-10 3.5E-15 122.8 8.3 151 427-594 39-200 (361)
121 2v9t_B SLIT homolog 2 protein 99.1 2.4E-10 8.2E-15 111.1 9.8 139 393-573 26-166 (220)
122 2v70_A SLIT-2, SLIT homolog 2 99.1 3E-10 1E-14 110.4 9.9 153 381-574 15-168 (220)
123 2p1m_B Transport inhibitor res 99.0 2.5E-11 8.6E-16 136.2 0.7 133 504-644 371-518 (594)
124 2je0_A Acidic leucine-rich nuc 99.0 4.7E-11 1.6E-15 108.3 2.1 130 424-591 14-148 (149)
125 2ell_A Acidic leucine-rich nuc 99.0 1.9E-10 6.4E-15 106.6 6.0 86 425-519 22-109 (168)
126 1w8a_A SLIT protein; signaling 99.0 8E-10 2.7E-14 104.9 8.5 81 430-520 11-93 (192)
127 4b8c_D Glucose-repressible alc 99.0 7.2E-11 2.5E-15 135.3 1.4 108 398-519 223-330 (727)
128 2wfh_A SLIT homolog 2 protein 99.0 1.5E-09 5E-14 103.2 9.9 81 430-520 13-93 (193)
129 2ell_A Acidic leucine-rich nuc 99.0 1.3E-09 4.4E-14 100.9 8.9 129 376-520 23-162 (168)
130 1a9n_A U2A', U2A'; complex (nu 98.9 7.2E-10 2.5E-14 103.6 6.7 87 423-520 15-103 (176)
131 1w5s_A Origin recognition comp 98.9 2.2E-09 7.7E-14 114.5 9.2 115 101-218 22-149 (412)
132 1ds9_A Outer arm dynein; leuci 98.9 4.4E-11 1.5E-15 114.2 -4.3 89 423-517 14-105 (198)
133 2wfh_A SLIT homolog 2 protein 98.8 6.5E-09 2.2E-13 98.6 9.4 113 390-515 22-136 (193)
134 2o6r_A Variable lymphocyte rec 98.8 1E-08 3.5E-13 95.6 9.3 124 381-517 11-136 (177)
135 2je0_A Acidic leucine-rich nuc 98.8 4.5E-09 1.5E-13 95.0 6.4 77 398-485 41-120 (149)
136 1a9n_A U2A', U2A'; complex (nu 98.8 4.7E-09 1.6E-13 98.0 6.6 127 376-517 18-152 (176)
137 1w8a_A SLIT protein; signaling 98.8 8E-09 2.8E-13 97.9 7.5 123 381-516 12-137 (192)
138 1ds9_A Outer arm dynein; leuci 98.8 3.6E-10 1.2E-14 107.8 -2.5 91 419-520 40-130 (198)
139 2o6r_A Variable lymphocyte rec 98.8 3E-08 1E-12 92.4 10.7 77 429-516 9-87 (177)
140 2qby_B CDC6 homolog 3, cell di 98.7 2.7E-08 9.1E-13 105.1 8.7 114 101-218 20-144 (384)
141 2r9u_A Variable lymphocyte rec 98.7 3.3E-08 1.1E-12 92.1 7.4 82 427-516 33-116 (174)
142 3g39_A Variable lymphocyte rec 98.6 4.5E-08 1.6E-12 90.7 7.0 81 427-515 30-112 (170)
143 2v1u_A Cell division control p 98.6 9.1E-08 3.1E-12 100.9 10.1 113 101-218 19-141 (387)
144 2qen_A Walker-type ATPase; unk 98.6 6.5E-08 2.2E-12 100.5 8.0 230 98-353 9-347 (350)
145 1fnn_A CDC6P, cell division co 98.6 3.3E-07 1.1E-11 96.7 13.1 113 101-218 17-136 (389)
146 2qby_A CDC6 homolog 1, cell di 98.5 4.9E-08 1.7E-12 102.9 5.9 113 101-218 20-139 (386)
147 3sb4_A Hypothetical leucine ri 98.5 6.2E-08 2.1E-12 100.0 5.3 98 532-638 225-327 (329)
148 2r9u_A Variable lymphocyte rec 98.4 2.3E-07 7.9E-12 86.2 6.8 87 392-486 26-113 (174)
149 3g39_A Variable lymphocyte rec 98.3 7.2E-07 2.4E-11 82.5 7.7 106 428-574 10-117 (170)
150 4fdw_A Leucine rich hypothetic 98.3 3.9E-06 1.3E-10 88.8 14.3 210 400-641 136-354 (401)
151 2fna_A Conserved hypothetical 98.3 7E-07 2.4E-11 92.8 8.3 70 99-179 11-85 (357)
152 3te6_A Regulatory protein SIR3 98.1 5.3E-06 1.8E-10 84.1 9.3 112 102-216 21-141 (318)
153 4fdw_A Leucine rich hypothetic 98.1 2.2E-05 7.6E-10 83.0 14.5 230 378-640 136-378 (401)
154 3sb4_A Hypothetical leucine ri 98.1 5E-06 1.7E-10 85.6 7.9 181 418-614 84-327 (329)
155 2chg_A Replication factor C sm 98.1 6.1E-06 2.1E-10 79.2 8.0 44 101-146 17-60 (226)
156 2ifg_A High affinity nerve gro 98.0 4.7E-06 1.6E-10 86.4 7.0 89 390-487 21-112 (347)
157 2ifg_A High affinity nerve gro 98.0 4.1E-06 1.4E-10 86.9 5.9 90 419-517 24-115 (347)
158 1jbk_A CLPB protein; beta barr 98.0 1.2E-05 4.1E-10 75.1 7.9 45 101-147 22-66 (195)
159 3e4g_A ATP synthase subunit S, 98.0 2.1E-06 7.2E-11 79.0 2.5 89 559-647 61-154 (176)
160 1njg_A DNA polymerase III subu 98.0 1.6E-05 5.5E-10 77.2 8.5 46 101-147 23-68 (250)
161 3un9_A NLR family member X1; l 98.0 5.5E-07 1.9E-11 94.5 -2.3 83 427-516 101-194 (372)
162 3un9_A NLR family member X1; l 97.8 4.9E-06 1.7E-10 87.2 2.8 135 376-519 71-225 (372)
163 2ra8_A Uncharacterized protein 97.8 3.2E-06 1.1E-10 88.0 1.2 87 422-514 134-228 (362)
164 2p65_A Hypothetical protein PF 97.8 3.2E-05 1.1E-09 71.8 7.3 44 101-146 22-65 (187)
165 1sxj_B Activator 1 37 kDa subu 97.8 2.7E-05 9.4E-10 79.5 6.9 44 101-146 21-64 (323)
166 2ra8_A Uncharacterized protein 97.7 2E-05 6.9E-10 82.0 3.8 164 468-643 129-318 (362)
167 2w58_A DNAI, primosome compone 97.6 0.00011 3.6E-09 69.7 8.2 62 108-177 36-99 (202)
168 1iqp_A RFCS; clamp loader, ext 97.5 8.7E-05 3E-09 75.9 6.6 44 101-146 25-68 (327)
169 3h4m_A Proteasome-activating n 97.4 0.00015 5E-09 72.7 5.6 48 99-146 15-73 (285)
170 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00044 1.5E-08 68.1 7.9 48 99-146 4-61 (262)
171 3cf0_A Transitional endoplasmi 97.3 0.0011 3.7E-08 67.0 11.0 94 100-217 14-118 (301)
172 1io0_A Tropomodulin; LRR prote 97.2 0.00011 3.8E-09 68.6 2.6 113 398-516 35-162 (185)
173 3ec2_A DNA replication protein 97.2 0.00043 1.5E-08 64.1 6.6 91 106-217 19-110 (180)
174 1sxj_A Activator 1 95 kDa subu 97.2 0.00031 1.1E-08 76.8 5.5 48 100-147 38-100 (516)
175 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.0022 7.4E-08 65.5 10.5 49 98-146 9-67 (322)
176 3b9p_A CG5977-PA, isoform A; A 97.1 0.0014 4.8E-08 66.0 9.0 47 100-146 20-76 (297)
177 3rw6_A Nuclear RNA export fact 97.0 0.00057 1.9E-08 67.5 5.7 59 422-486 165-228 (267)
178 3d8b_A Fidgetin-like protein 1 97.0 0.00099 3.4E-08 69.1 7.7 47 100-146 83-139 (357)
179 2z4s_A Chromosomal replication 97.0 0.001 3.5E-08 71.1 7.9 97 102-218 106-205 (440)
180 3eie_A Vacuolar protein sortin 97.0 0.001 3.5E-08 67.9 7.6 48 99-146 16-73 (322)
181 3uk6_A RUVB-like 2; hexameric 97.0 0.0014 4.9E-08 68.0 8.4 48 100-147 43-93 (368)
182 3e4g_A ATP synthase subunit S, 96.9 0.0005 1.7E-08 63.1 4.0 67 555-623 82-154 (176)
183 1lv7_A FTSH; alpha/beta domain 96.9 0.0023 7.8E-08 62.9 9.1 48 100-147 11-68 (257)
184 3syl_A Protein CBBX; photosynt 96.9 0.001 3.5E-08 67.3 6.7 45 102-146 32-89 (309)
185 2zan_A Vacuolar protein sortin 96.9 0.0026 9E-08 67.9 9.7 49 98-146 131-189 (444)
186 3pvs_A Replication-associated 96.9 0.0036 1.2E-07 66.7 10.6 45 100-146 25-72 (447)
187 2chq_A Replication factor C sm 96.9 0.00064 2.2E-08 69.0 4.5 44 101-146 17-60 (319)
188 3pxg_A Negative regulator of g 96.8 0.0019 6.3E-08 69.6 8.0 44 101-146 180-223 (468)
189 1io0_A Tropomodulin; LRR prote 96.8 0.00053 1.8E-08 63.9 3.2 97 418-516 27-134 (185)
190 1l8q_A Chromosomal replication 96.8 0.0023 7.8E-08 65.3 8.0 38 109-146 22-59 (324)
191 3n70_A Transport activator; si 96.8 0.00073 2.5E-08 60.2 3.5 46 102-147 2-47 (145)
192 3vfd_A Spastin; ATPase, microt 96.7 0.0032 1.1E-07 66.0 8.4 48 99-146 113-170 (389)
193 3u61_B DNA polymerase accessor 96.7 0.0055 1.9E-07 62.4 9.7 46 100-146 25-70 (324)
194 1qvr_A CLPB protein; coiled co 96.6 0.0031 1.1E-07 73.3 8.5 44 101-146 170-213 (854)
195 3qfl_A MLA10; coiled-coil, (CC 96.6 0.00067 2.3E-08 57.7 2.0 30 8-41 57-86 (115)
196 1hqc_A RUVB; extended AAA-ATPa 96.6 0.0026 8.9E-08 64.8 6.8 47 100-146 11-60 (324)
197 2qp9_X Vacuolar protein sortin 96.6 0.0022 7.6E-08 66.4 6.1 48 99-146 49-106 (355)
198 1d2n_A N-ethylmaleimide-sensit 96.5 0.0064 2.2E-07 60.2 8.9 47 101-147 33-87 (272)
199 3rw6_A Nuclear RNA export fact 96.5 0.0026 9E-08 62.6 5.8 80 398-485 169-258 (267)
200 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0019 6.4E-08 65.0 4.7 67 124-216 123-191 (331)
201 2cvh_A DNA repair and recombin 96.4 0.0077 2.6E-07 57.3 8.6 88 123-216 19-114 (220)
202 1r6b_X CLPA protein; AAA+, N-t 96.4 0.006 2.1E-07 70.0 9.0 44 101-146 186-229 (758)
203 4fs7_A Uncharacterized protein 96.4 0.018 6.2E-07 60.3 12.1 13 579-591 293-305 (394)
204 4fcw_A Chaperone protein CLPB; 96.4 0.0036 1.2E-07 63.3 6.4 45 102-146 18-69 (311)
205 4fs7_A Uncharacterized protein 96.4 0.015 5.2E-07 60.9 11.3 76 559-640 297-374 (394)
206 3pfi_A Holliday junction ATP-d 96.4 0.0018 6.2E-08 66.5 3.8 47 100-146 28-77 (338)
207 4b4t_K 26S protease regulatory 96.3 0.0093 3.2E-07 62.8 9.1 49 98-146 169-228 (428)
208 2ce7_A Cell division protein F 96.3 0.0075 2.6E-07 64.5 8.4 48 99-146 14-71 (476)
209 4b4t_L 26S protease subunit RP 96.3 0.012 3.9E-07 62.2 9.4 49 98-146 178-237 (437)
210 3co5_A Putative two-component 96.3 0.00089 3E-08 59.5 0.7 47 101-147 4-50 (143)
211 3pxi_A Negative regulator of g 96.3 0.0069 2.3E-07 69.5 8.3 44 101-146 180-223 (758)
212 3bos_A Putative DNA replicatio 96.2 0.0052 1.8E-07 59.2 6.0 58 101-162 28-88 (242)
213 3hu3_A Transitional endoplasmi 96.2 0.004 1.4E-07 67.1 5.5 92 101-216 204-306 (489)
214 4b4t_J 26S protease regulatory 96.2 0.0084 2.9E-07 62.3 7.7 48 99-146 146-204 (405)
215 1jr3_A DNA polymerase III subu 96.2 0.0038 1.3E-07 64.9 5.2 46 101-147 16-61 (373)
216 2qgz_A Helicase loader, putati 96.2 0.0032 1.1E-07 63.7 4.5 42 106-147 133-175 (308)
217 4b4t_H 26S protease regulatory 96.1 0.011 3.9E-07 62.2 8.2 48 99-146 207-265 (467)
218 1rz3_A Hypothetical protein rb 96.1 0.0058 2E-07 57.5 5.6 41 106-146 3-44 (201)
219 3c8u_A Fructokinase; YP_612366 96.1 0.0044 1.5E-07 58.7 4.5 38 109-146 7-44 (208)
220 1sxj_D Activator 1 41 kDa subu 96.0 0.0047 1.6E-07 63.6 5.0 46 100-147 36-81 (353)
221 4b4t_M 26S protease regulatory 96.0 0.012 4.2E-07 61.9 7.9 49 98-146 178-237 (434)
222 1ypw_A Transitional endoplasmi 96.0 0.0096 3.3E-07 68.4 7.6 49 98-146 201-260 (806)
223 1in4_A RUVB, holliday junction 95.9 0.0041 1.4E-07 63.8 3.8 46 101-146 25-73 (334)
224 3hr8_A Protein RECA; alpha and 95.8 0.017 5.9E-07 59.2 8.1 85 123-216 60-148 (356)
225 1n0w_A DNA repair protein RAD5 95.8 0.022 7.6E-07 54.9 8.5 93 123-216 23-128 (243)
226 1ofh_A ATP-dependent HSL prote 95.7 0.0049 1.7E-07 62.1 3.5 46 101-146 15-72 (310)
227 2bjv_A PSP operon transcriptio 95.7 0.0053 1.8E-07 60.5 3.5 47 101-147 6-52 (265)
228 3cf2_A TER ATPase, transitiona 95.7 0.017 5.7E-07 65.7 7.8 96 98-217 201-307 (806)
229 2dhr_A FTSH; AAA+ protein, hex 95.7 0.02 7E-07 61.6 8.2 50 98-147 28-87 (499)
230 4b4t_I 26S protease regulatory 95.7 0.025 8.7E-07 59.0 8.5 49 98-146 179-238 (437)
231 1odf_A YGR205W, hypothetical 3 95.6 0.012 4.1E-07 58.9 5.6 38 109-146 12-53 (290)
232 1u94_A RECA protein, recombina 95.6 0.018 6.1E-07 59.3 7.0 85 123-216 62-150 (356)
233 1sxj_E Activator 1 40 kDa subu 95.6 0.0053 1.8E-07 63.3 3.0 44 101-146 14-58 (354)
234 2r62_A Cell division protease 95.5 0.0056 1.9E-07 60.4 2.9 48 100-147 10-67 (268)
235 2zr9_A Protein RECA, recombina 95.5 0.026 8.8E-07 58.0 7.8 85 123-216 60-148 (349)
236 3lw7_A Adenylate kinase relate 95.4 0.0066 2.3E-07 55.2 2.9 20 125-144 2-21 (179)
237 1v5w_A DMC1, meiotic recombina 95.4 0.048 1.6E-06 55.9 9.5 94 122-216 120-228 (343)
238 1xp8_A RECA protein, recombina 95.4 0.029 9.9E-07 57.9 7.8 85 123-216 73-161 (366)
239 3kb2_A SPBC2 prophage-derived 95.3 0.0075 2.6E-07 54.8 2.9 22 125-146 2-23 (173)
240 1ojl_A Transcriptional regulat 95.3 0.0089 3E-07 60.3 3.6 47 101-147 2-48 (304)
241 1zp6_A Hypothetical protein AT 95.3 0.01 3.5E-07 55.1 3.6 23 124-146 9-31 (191)
242 3hws_A ATP-dependent CLP prote 95.2 0.013 4.6E-07 60.6 4.7 45 102-146 16-73 (363)
243 3vaa_A Shikimate kinase, SK; s 95.2 0.0089 3E-07 56.1 3.0 23 124-146 25-47 (199)
244 2ga8_A Hypothetical 39.9 kDa p 95.2 0.018 6.1E-07 58.7 5.4 43 104-146 2-46 (359)
245 1sxj_C Activator 1 40 kDa subu 95.2 0.013 4.3E-07 60.2 4.5 44 101-146 25-68 (340)
246 1qhx_A CPT, protein (chloramph 95.2 0.009 3.1E-07 54.8 3.0 22 125-146 4-25 (178)
247 2x8a_A Nuclear valosin-contain 95.2 0.017 5.7E-07 57.3 5.0 48 99-146 8-66 (274)
248 2c9o_A RUVB-like 1; hexameric 95.1 0.019 6.6E-07 61.4 5.8 48 100-147 36-86 (456)
249 2z43_A DNA repair and recombin 95.1 0.064 2.2E-06 54.5 9.4 93 123-216 106-212 (324)
250 2i1q_A DNA repair and recombin 95.1 0.05 1.7E-06 55.2 8.4 93 123-216 97-213 (322)
251 4gt6_A Cell surface protein; l 95.1 0.13 4.5E-06 53.6 11.9 76 559-640 288-365 (394)
252 1ixz_A ATP-dependent metallopr 95.1 0.015 5.2E-07 56.8 4.3 48 100-147 15-72 (254)
253 1ly1_A Polynucleotide kinase; 95.0 0.012 4E-07 54.0 3.3 22 125-146 3-24 (181)
254 2r44_A Uncharacterized protein 95.0 0.015 5.3E-07 59.2 4.3 42 101-146 27-68 (331)
255 1kag_A SKI, shikimate kinase I 94.9 0.0096 3.3E-07 54.3 2.3 22 125-146 5-26 (173)
256 3uie_A Adenylyl-sulfate kinase 94.9 0.015 5.2E-07 54.6 3.5 24 123-146 24-47 (200)
257 1kgd_A CASK, peripheral plasma 94.9 0.013 4.3E-07 54.1 2.9 23 124-146 5-27 (180)
258 1sky_E F1-ATPase, F1-ATP synth 94.9 0.03 1E-06 59.3 6.1 52 125-177 152-204 (473)
259 3trf_A Shikimate kinase, SK; a 94.8 0.013 4.4E-07 54.1 2.9 23 124-146 5-27 (185)
260 2px0_A Flagellar biosynthesis 94.8 0.048 1.6E-06 54.6 7.2 24 123-146 104-127 (296)
261 1zuh_A Shikimate kinase; alpha 94.8 0.014 4.8E-07 53.0 2.9 24 123-146 6-29 (168)
262 2kjq_A DNAA-related protein; s 94.7 0.011 3.9E-07 52.6 2.2 25 123-147 35-59 (149)
263 3ice_A Transcription terminati 94.7 0.0086 2.9E-07 61.5 1.5 51 112-166 163-216 (422)
264 1knq_A Gluconate kinase; ALFA/ 94.7 0.016 5.4E-07 53.0 3.3 24 123-146 7-30 (175)
265 1nks_A Adenylate kinase; therm 94.7 0.016 5.3E-07 53.7 3.2 22 125-146 2-23 (194)
266 3nbx_X ATPase RAVA; AAA+ ATPas 94.7 0.022 7.4E-07 61.5 4.6 42 101-146 22-63 (500)
267 1iy2_A ATP-dependent metallopr 94.7 0.022 7.4E-07 56.5 4.3 50 98-147 37-96 (278)
268 2qt1_A Nicotinamide riboside k 94.7 0.019 6.4E-07 54.1 3.7 24 123-146 20-43 (207)
269 1uf9_A TT1252 protein; P-loop, 94.6 0.018 6.2E-07 53.9 3.5 25 122-146 6-30 (203)
270 1vma_A Cell division protein F 94.6 0.12 4.1E-06 51.9 9.7 40 107-146 81-126 (306)
271 3t61_A Gluconokinase; PSI-biol 94.6 0.012 4.2E-07 55.2 2.2 23 124-146 18-40 (202)
272 4eun_A Thermoresistant glucoki 94.6 0.016 5.5E-07 54.3 3.0 24 123-146 28-51 (200)
273 1gvn_B Zeta; postsegregational 94.6 0.031 1E-06 55.8 5.2 39 108-146 14-55 (287)
274 2bdt_A BH3686; alpha-beta prot 94.6 0.018 6.1E-07 53.4 3.3 22 125-146 3-24 (189)
275 2rhm_A Putative kinase; P-loop 94.6 0.019 6.5E-07 53.2 3.5 23 124-146 5-27 (193)
276 3fwy_A Light-independent proto 94.6 0.018 6.1E-07 58.2 3.5 23 123-145 47-69 (314)
277 1uj2_A Uridine-cytidine kinase 94.6 0.018 6.2E-07 56.2 3.4 25 122-146 20-44 (252)
278 2p5t_B PEZT; postsegregational 94.6 0.029 1E-06 54.8 4.9 40 107-146 12-54 (253)
279 2gno_A DNA polymerase III, gam 94.6 0.12 4.2E-06 51.8 9.6 40 105-146 1-40 (305)
280 2jaq_A Deoxyguanosine kinase; 94.6 0.016 5.6E-07 54.2 3.0 21 126-146 2-22 (205)
281 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.059 2E-06 51.4 6.9 23 124-146 23-45 (235)
282 1kht_A Adenylate kinase; phosp 94.5 0.017 5.9E-07 53.4 2.9 22 125-146 4-25 (192)
283 1ukz_A Uridylate kinase; trans 94.5 0.022 7.6E-07 53.4 3.7 24 123-146 14-37 (203)
284 2if2_A Dephospho-COA kinase; a 94.5 0.018 6.2E-07 54.1 3.0 22 125-146 2-23 (204)
285 3asz_A Uridine kinase; cytidin 94.5 0.021 7E-07 54.0 3.4 24 123-146 5-28 (211)
286 4h09_A Hypothetical leucine ri 94.5 0.084 2.9E-06 54.7 8.5 75 377-464 46-122 (379)
287 3iij_A Coilin-interacting nucl 94.4 0.016 5.4E-07 53.3 2.5 23 124-146 11-33 (180)
288 4gp7_A Metallophosphoesterase; 94.4 0.019 6.4E-07 52.4 3.0 23 124-146 9-31 (171)
289 2xxa_A Signal recognition part 94.4 0.11 3.8E-06 54.8 9.3 39 108-146 77-122 (433)
290 1y63_A LMAJ004144AAA protein; 94.4 0.021 7.1E-07 52.8 3.3 24 123-146 9-32 (184)
291 1um8_A ATP-dependent CLP prote 94.4 0.032 1.1E-06 58.0 5.0 46 101-146 21-94 (376)
292 3tr0_A Guanylate kinase, GMP k 94.4 0.021 7.1E-07 53.6 3.2 23 124-146 7-29 (205)
293 2j41_A Guanylate kinase; GMP, 94.4 0.021 7.2E-07 53.6 3.2 23 124-146 6-28 (207)
294 2c95_A Adenylate kinase 1; tra 94.3 0.021 7.2E-07 53.1 3.2 23 124-146 9-31 (196)
295 1tev_A UMP-CMP kinase; ploop, 94.3 0.022 7.6E-07 52.8 3.3 23 124-146 3-25 (196)
296 3tqc_A Pantothenate kinase; bi 94.3 0.038 1.3E-06 55.9 5.1 39 108-146 74-114 (321)
297 2ze6_A Isopentenyl transferase 94.3 0.022 7.5E-07 55.7 3.3 22 125-146 2-23 (253)
298 1jjv_A Dephospho-COA kinase; P 94.3 0.023 7.9E-07 53.4 3.4 22 125-146 3-24 (206)
299 1cke_A CK, MSSA, protein (cyti 94.3 0.021 7.1E-07 54.6 3.0 22 125-146 6-27 (227)
300 3tlx_A Adenylate kinase 2; str 94.3 0.035 1.2E-06 53.9 4.7 40 107-146 12-51 (243)
301 2yvu_A Probable adenylyl-sulfa 94.3 0.025 8.7E-07 52.2 3.5 24 123-146 12-35 (186)
302 3io5_A Recombination and repai 94.3 0.18 6.1E-06 50.5 9.7 82 126-216 30-120 (333)
303 2qor_A Guanylate kinase; phosp 94.2 0.019 6.6E-07 54.0 2.6 24 123-146 11-34 (204)
304 1via_A Shikimate kinase; struc 94.2 0.018 6.1E-07 52.7 2.3 22 125-146 5-26 (175)
305 3tau_A Guanylate kinase, GMP k 94.2 0.023 7.9E-07 53.7 3.2 24 123-146 7-30 (208)
306 2hf9_A Probable hydrogenase ni 94.2 0.046 1.6E-06 52.1 5.2 38 108-147 24-61 (226)
307 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.025 8.7E-07 55.5 3.4 23 124-146 4-26 (260)
308 1xjc_A MOBB protein homolog; s 94.1 0.024 8.4E-07 51.4 3.0 24 123-146 3-26 (169)
309 3a00_A Guanylate kinase, GMP k 94.1 0.02 6.8E-07 53.0 2.4 22 125-146 2-23 (186)
310 2iyv_A Shikimate kinase, SK; t 94.1 0.018 6.1E-07 53.1 2.1 22 125-146 3-24 (184)
311 1g8p_A Magnesium-chelatase 38 94.1 0.026 9E-07 57.8 3.6 45 100-146 23-67 (350)
312 3cm0_A Adenylate kinase; ATP-b 94.1 0.026 8.9E-07 52.0 3.2 23 124-146 4-26 (186)
313 2ck3_D ATP synthase subunit be 94.1 0.16 5.4E-06 53.7 9.4 104 112-217 142-263 (482)
314 3l0o_A Transcription terminati 94.1 0.054 1.9E-06 55.5 5.7 36 110-146 162-197 (427)
315 2bwj_A Adenylate kinase 5; pho 94.1 0.024 8.2E-07 52.8 2.9 23 124-146 12-34 (199)
316 1ye8_A Protein THEP1, hypothet 94.0 0.026 8.9E-07 51.9 3.0 22 126-147 2-23 (178)
317 1qf9_A UMP/CMP kinase, protein 94.0 0.028 9.5E-07 52.0 3.3 23 124-146 6-28 (194)
318 2ffh_A Protein (FFH); SRP54, s 94.0 0.12 4.2E-06 54.2 8.5 24 123-146 97-120 (425)
319 2grj_A Dephospho-COA kinase; T 94.0 0.029 9.8E-07 52.3 3.3 24 123-146 11-34 (192)
320 2bbw_A Adenylate kinase 4, AK4 94.0 0.026 9E-07 54.8 3.1 23 124-146 27-49 (246)
321 1e6c_A Shikimate kinase; phosp 94.0 0.021 7.3E-07 51.9 2.3 22 125-146 3-24 (173)
322 1a5t_A Delta prime, HOLB; zinc 94.0 0.17 6E-06 51.4 9.5 39 107-146 8-46 (334)
323 2pt5_A Shikimate kinase, SK; a 94.0 0.027 9.2E-07 50.9 3.0 21 126-146 2-22 (168)
324 2plr_A DTMP kinase, probable t 94.0 0.028 9.7E-07 52.9 3.3 23 124-146 4-26 (213)
325 2wsm_A Hydrogenase expression/ 94.0 0.035 1.2E-06 52.7 3.9 42 104-147 12-53 (221)
326 2vli_A Antibiotic resistance p 93.9 0.021 7.2E-07 52.4 2.2 23 124-146 5-27 (183)
327 3p32_A Probable GTPase RV1496/ 93.9 0.056 1.9E-06 55.7 5.5 37 110-146 65-101 (355)
328 2pbr_A DTMP kinase, thymidylat 93.9 0.029 9.8E-07 52.0 3.0 21 126-146 2-22 (195)
329 2b8t_A Thymidine kinase; deoxy 93.8 0.018 6.1E-07 55.0 1.6 87 123-216 11-98 (223)
330 3aez_A Pantothenate kinase; tr 93.8 0.033 1.1E-06 56.2 3.6 25 122-146 88-112 (312)
331 2cdn_A Adenylate kinase; phosp 93.8 0.034 1.1E-06 52.1 3.4 24 123-146 19-42 (201)
332 3e70_C DPA, signal recognition 93.8 0.05 1.7E-06 55.2 4.8 25 122-146 127-151 (328)
333 1lvg_A Guanylate kinase, GMP k 93.7 0.025 8.4E-07 53.0 2.3 23 124-146 4-26 (198)
334 2jeo_A Uridine-cytidine kinase 93.7 0.037 1.3E-06 53.7 3.6 24 123-146 24-47 (245)
335 3t15_A Ribulose bisphosphate c 93.7 0.031 1.1E-06 56.0 3.0 24 123-146 35-58 (293)
336 1ex7_A Guanylate kinase; subst 93.6 0.027 9.1E-07 52.2 2.3 22 125-146 2-23 (186)
337 1g41_A Heat shock protein HSLU 93.6 0.055 1.9E-06 57.1 5.0 46 101-146 15-72 (444)
338 1gtv_A TMK, thymidylate kinase 93.6 0.021 7.1E-07 54.0 1.6 21 126-146 2-22 (214)
339 1nn5_A Similar to deoxythymidy 93.6 0.035 1.2E-06 52.4 3.2 23 124-146 9-31 (215)
340 2pez_A Bifunctional 3'-phospho 93.6 0.039 1.3E-06 50.6 3.4 24 123-146 4-27 (179)
341 4a74_A DNA repair and recombin 93.6 0.1 3.5E-06 49.6 6.5 48 123-170 24-75 (231)
342 4e22_A Cytidylate kinase; P-lo 93.6 0.034 1.2E-06 54.3 3.1 24 123-146 26-49 (252)
343 2f1r_A Molybdopterin-guanine d 93.5 0.029 9.8E-07 51.2 2.3 22 125-146 3-24 (171)
344 1aky_A Adenylate kinase; ATP:A 93.5 0.036 1.2E-06 52.7 3.1 23 124-146 4-26 (220)
345 1znw_A Guanylate kinase, GMP k 93.5 0.036 1.2E-06 52.3 3.0 23 124-146 20-42 (207)
346 2f6r_A COA synthase, bifunctio 93.5 0.043 1.5E-06 54.6 3.7 24 123-146 74-97 (281)
347 1zu4_A FTSY; GTPase, signal re 93.5 0.077 2.6E-06 53.7 5.7 24 123-146 104-127 (320)
348 2wwf_A Thymidilate kinase, put 93.5 0.036 1.2E-06 52.2 3.1 23 124-146 10-32 (212)
349 1zd8_A GTP:AMP phosphotransfer 93.4 0.035 1.2E-06 53.1 2.9 23 124-146 7-29 (227)
350 2z0h_A DTMP kinase, thymidylat 93.4 0.038 1.3E-06 51.3 3.1 21 126-146 2-22 (197)
351 1htw_A HI0065; nucleotide-bind 93.4 0.044 1.5E-06 49.3 3.4 24 123-146 32-55 (158)
352 3ney_A 55 kDa erythrocyte memb 93.4 0.038 1.3E-06 51.6 2.9 24 123-146 18-41 (197)
353 1sq5_A Pantothenate kinase; P- 93.3 0.084 2.9E-06 53.2 5.6 25 122-146 78-102 (308)
354 1vht_A Dephospho-COA kinase; s 93.3 0.046 1.6E-06 51.8 3.5 23 124-146 4-26 (218)
355 1m7g_A Adenylylsulfate kinase; 93.3 0.047 1.6E-06 51.6 3.6 24 123-146 24-47 (211)
356 2v54_A DTMP kinase, thymidylat 93.3 0.04 1.4E-06 51.5 2.9 23 124-146 4-26 (204)
357 1rj9_A FTSY, signal recognitio 93.2 0.045 1.5E-06 55.0 3.4 24 123-146 101-124 (304)
358 1z6g_A Guanylate kinase; struc 93.2 0.035 1.2E-06 52.8 2.4 23 124-146 23-45 (218)
359 1fx0_B ATP synthase beta chain 93.2 0.29 9.9E-06 51.9 9.5 103 113-217 155-276 (498)
360 3nwj_A ATSK2; P loop, shikimat 93.1 0.035 1.2E-06 54.0 2.3 22 125-146 49-70 (250)
361 1zak_A Adenylate kinase; ATP:A 93.1 0.039 1.4E-06 52.5 2.6 23 124-146 5-27 (222)
362 3fb4_A Adenylate kinase; psych 93.0 0.047 1.6E-06 51.6 3.1 21 126-146 2-22 (216)
363 3umf_A Adenylate kinase; rossm 93.0 0.057 2E-06 51.3 3.5 25 122-146 27-51 (217)
364 3ake_A Cytidylate kinase; CMP 92.9 0.051 1.7E-06 50.9 3.1 21 126-146 4-24 (208)
365 3vr4_D V-type sodium ATPase su 92.8 0.12 4.1E-06 54.3 6.0 90 125-216 152-257 (465)
366 2i3b_A HCR-ntpase, human cance 92.8 0.045 1.5E-06 50.8 2.6 23 125-147 2-24 (189)
367 3dl0_A Adenylate kinase; phosp 92.8 0.052 1.8E-06 51.4 3.1 21 126-146 2-22 (216)
368 3m6a_A ATP-dependent protease 92.8 0.065 2.2E-06 58.6 4.1 46 101-146 81-130 (543)
369 3b9q_A Chloroplast SRP recepto 92.8 0.061 2.1E-06 54.0 3.6 43 123-168 99-141 (302)
370 3rfe_A Platelet glycoprotein I 92.8 0.072 2.5E-06 46.1 3.6 35 428-466 32-66 (130)
371 2og2_A Putative signal recogni 92.7 0.1 3.5E-06 53.6 5.2 43 123-168 156-198 (359)
372 1s96_A Guanylate kinase, GMP k 92.6 0.058 2E-06 51.3 3.1 24 123-146 15-38 (219)
373 3d3q_A TRNA delta(2)-isopenten 92.6 0.06 2E-06 54.7 3.3 22 125-146 8-29 (340)
374 3be4_A Adenylate kinase; malar 92.6 0.05 1.7E-06 51.6 2.6 23 124-146 5-27 (217)
375 2ehv_A Hypothetical protein PH 92.6 0.056 1.9E-06 52.3 3.0 24 123-146 29-52 (251)
376 3dm5_A SRP54, signal recogniti 92.6 0.34 1.1E-05 51.0 9.1 24 123-146 99-122 (443)
377 2yhs_A FTSY, cell division pro 92.6 0.11 3.9E-06 55.3 5.4 43 123-168 292-334 (503)
378 3lnc_A Guanylate kinase, GMP k 92.5 0.041 1.4E-06 52.8 1.9 23 124-146 27-50 (231)
379 2onk_A Molybdate/tungstate ABC 92.5 0.062 2.1E-06 51.9 3.1 23 123-146 24-46 (240)
380 3pxi_A Negative regulator of g 92.5 0.096 3.3E-06 59.9 5.2 46 101-146 491-543 (758)
381 3gqb_B V-type ATP synthase bet 92.5 0.08 2.7E-06 55.6 4.0 92 125-216 148-260 (464)
382 3hjn_A DTMP kinase, thymidylat 92.4 0.19 6.4E-06 46.9 6.3 50 126-177 2-51 (197)
383 1np6_A Molybdopterin-guanine d 92.4 0.064 2.2E-06 49.0 2.9 23 124-146 6-28 (174)
384 3k1j_A LON protease, ATP-depen 92.4 0.077 2.6E-06 58.9 4.1 42 101-146 41-82 (604)
385 2qe7_A ATP synthase subunit al 92.4 0.17 5.7E-06 53.8 6.4 88 125-216 163-263 (502)
386 1tue_A Replication protein E1; 92.3 0.11 3.8E-06 48.5 4.3 37 109-146 44-80 (212)
387 2pcj_A ABC transporter, lipopr 92.2 0.062 2.1E-06 51.4 2.7 23 124-146 30-52 (224)
388 3gfo_A Cobalt import ATP-bindi 92.2 0.099 3.4E-06 51.6 4.3 23 124-146 34-56 (275)
389 1e4v_A Adenylate kinase; trans 92.2 0.069 2.4E-06 50.5 3.0 21 126-146 2-22 (214)
390 2xb4_A Adenylate kinase; ATP-b 92.2 0.069 2.3E-06 51.0 3.0 21 126-146 2-22 (223)
391 3r20_A Cytidylate kinase; stru 92.2 0.07 2.4E-06 51.2 3.0 23 124-146 9-31 (233)
392 3tif_A Uncharacterized ABC tra 92.2 0.068 2.3E-06 51.5 3.0 23 124-146 31-53 (235)
393 1svm_A Large T antigen; AAA+ f 92.2 0.12 4.1E-06 53.5 5.0 25 122-146 167-191 (377)
394 3b85_A Phosphate starvation-in 92.2 0.059 2E-06 50.8 2.5 22 125-146 23-44 (208)
395 2r9v_A ATP synthase subunit al 92.1 0.14 4.8E-06 54.4 5.5 89 125-217 176-277 (515)
396 1ak2_A Adenylate kinase isoenz 92.1 0.077 2.6E-06 50.9 3.2 23 124-146 16-38 (233)
397 1yrb_A ATP(GTP)binding protein 92.0 0.089 3E-06 51.3 3.7 24 123-146 13-36 (262)
398 1j8m_F SRP54, signal recogniti 92.0 0.12 4.1E-06 51.7 4.5 23 124-146 98-120 (297)
399 2cbz_A Multidrug resistance-as 91.9 0.073 2.5E-06 51.4 2.8 23 124-146 31-53 (237)
400 1q3t_A Cytidylate kinase; nucl 91.9 0.083 2.8E-06 50.8 3.2 25 122-146 14-38 (236)
401 3end_A Light-independent proto 91.9 0.088 3E-06 52.9 3.5 25 122-146 39-63 (307)
402 1a7j_A Phosphoribulokinase; tr 91.8 0.052 1.8E-06 54.2 1.7 24 123-146 4-27 (290)
403 2d2e_A SUFC protein; ABC-ATPas 91.8 0.084 2.9E-06 51.4 3.1 23 124-146 29-51 (250)
404 1b0u_A Histidine permease; ABC 91.8 0.075 2.6E-06 52.1 2.8 24 123-146 31-54 (262)
405 4eaq_A DTMP kinase, thymidylat 91.8 0.15 5.1E-06 48.8 4.9 25 123-147 25-49 (229)
406 2vp4_A Deoxynucleoside kinase; 91.8 0.071 2.4E-06 51.1 2.6 24 123-146 19-42 (230)
407 1ji0_A ABC transporter; ATP bi 91.7 0.079 2.7E-06 51.2 2.8 23 124-146 32-54 (240)
408 1ltq_A Polynucleotide kinase; 91.7 0.088 3E-06 52.7 3.3 22 125-146 3-24 (301)
409 3crm_A TRNA delta(2)-isopenten 91.7 0.089 3E-06 53.0 3.2 22 125-146 6-27 (323)
410 1mv5_A LMRA, multidrug resista 91.7 0.086 2.9E-06 51.1 3.0 24 123-146 27-50 (243)
411 1cr0_A DNA primase/helicase; R 91.6 0.21 7.1E-06 49.8 6.0 54 123-180 34-88 (296)
412 1oix_A RAS-related protein RAB 91.6 0.091 3.1E-06 48.6 3.0 25 123-147 28-52 (191)
413 4g1u_C Hemin import ATP-bindin 91.6 0.081 2.8E-06 52.0 2.8 23 124-146 37-59 (266)
414 1g6h_A High-affinity branched- 91.6 0.082 2.8E-06 51.7 2.8 23 124-146 33-55 (257)
415 2zu0_C Probable ATP-dependent 91.6 0.09 3.1E-06 51.7 3.1 24 123-146 45-68 (267)
416 3a8t_A Adenylate isopentenyltr 91.6 0.11 3.7E-06 52.6 3.7 24 123-146 39-62 (339)
417 2olj_A Amino acid ABC transpor 91.6 0.082 2.8E-06 51.8 2.8 24 123-146 49-72 (263)
418 2pze_A Cystic fibrosis transme 91.6 0.083 2.9E-06 50.6 2.8 23 124-146 34-56 (229)
419 2dyk_A GTP-binding protein; GT 91.6 0.11 3.8E-06 46.0 3.5 23 125-147 2-24 (161)
420 1sgw_A Putative ABC transporte 91.6 0.07 2.4E-06 50.6 2.2 23 124-146 35-57 (214)
421 3rfe_A Platelet glycoprotein I 91.5 0.14 4.9E-06 44.2 4.0 51 430-487 11-64 (130)
422 3kl4_A SRP54, signal recogniti 91.5 0.15 5.1E-06 53.7 4.8 24 123-146 96-119 (433)
423 2ff7_A Alpha-hemolysin translo 91.4 0.087 3E-06 51.1 2.8 23 124-146 35-57 (247)
424 2ocp_A DGK, deoxyguanosine kin 91.4 0.11 3.6E-06 50.2 3.4 23 124-146 2-24 (241)
425 1ls1_A Signal recognition part 91.4 0.11 3.8E-06 51.9 3.6 24 123-146 97-120 (295)
426 1vpl_A ABC transporter, ATP-bi 91.4 0.089 3E-06 51.4 2.8 24 123-146 40-63 (256)
427 2wji_A Ferrous iron transport 91.4 0.11 3.9E-06 46.5 3.4 23 125-147 4-26 (165)
428 2ghi_A Transport protein; mult 91.3 0.093 3.2E-06 51.4 2.8 33 124-160 46-78 (260)
429 1pzn_A RAD51, DNA repair and r 91.2 0.23 7.8E-06 50.9 5.9 49 123-171 130-182 (349)
430 1r6b_X CLPA protein; AAA+, N-t 91.2 0.21 7.1E-06 57.1 6.1 46 101-146 458-510 (758)
431 2v3c_C SRP54, signal recogniti 91.2 0.12 4E-06 54.6 3.7 24 123-146 98-121 (432)
432 2ixe_A Antigen peptide transpo 91.2 0.093 3.2E-06 51.7 2.8 24 123-146 44-67 (271)
433 2ged_A SR-beta, signal recogni 91.2 0.13 4.6E-06 47.2 3.7 26 122-147 46-71 (193)
434 2qi9_C Vitamin B12 import ATP- 91.2 0.096 3.3E-06 50.9 2.8 23 124-146 26-48 (249)
435 2zej_A Dardarin, leucine-rich 91.1 0.093 3.2E-06 48.1 2.6 22 126-147 4-25 (184)
436 1cp2_A CP2, nitrogenase iron p 91.1 0.11 3.9E-06 50.9 3.3 22 125-146 2-23 (269)
437 2yz2_A Putative ABC transporte 91.1 0.097 3.3E-06 51.4 2.8 23 124-146 33-55 (266)
438 3exa_A TRNA delta(2)-isopenten 91.1 0.11 3.8E-06 51.9 3.2 23 124-146 3-25 (322)
439 2afh_E Nitrogenase iron protei 91.1 0.12 4E-06 51.4 3.5 23 124-146 2-24 (289)
440 4a1f_A DNAB helicase, replicat 91.1 0.27 9.4E-06 49.9 6.1 53 123-179 45-97 (338)
441 1tq4_A IIGP1, interferon-induc 91.1 0.12 4E-06 54.2 3.5 24 123-146 68-91 (413)
442 2nq2_C Hypothetical ABC transp 91.1 0.1 3.4E-06 50.9 2.8 23 124-146 31-53 (253)
443 2ihy_A ABC transporter, ATP-bi 91.0 0.1 3.4E-06 51.7 2.8 23 124-146 47-69 (279)
444 2p67_A LAO/AO transport system 91.0 0.22 7.4E-06 50.9 5.4 34 113-146 45-78 (341)
445 2f9l_A RAB11B, member RAS onco 91.0 0.11 3.6E-06 48.4 2.8 24 124-147 5-28 (199)
446 2ce2_X GTPase HRAS; signaling 91.0 0.13 4.6E-06 45.4 3.4 22 126-147 5-26 (166)
447 2eyu_A Twitching motility prot 90.9 0.12 4.2E-06 50.6 3.3 24 123-146 24-47 (261)
448 1fzq_A ADP-ribosylation factor 90.9 0.15 5.1E-06 46.6 3.7 26 122-147 14-39 (181)
449 3zvl_A Bifunctional polynucleo 90.8 0.11 3.8E-06 54.7 3.1 24 123-146 257-280 (416)
450 1fx0_A ATP synthase alpha chai 90.8 0.21 7E-06 53.2 5.1 85 124-216 163-264 (507)
451 2j37_W Signal recognition part 90.8 0.21 7E-06 53.7 5.1 25 122-146 99-123 (504)
452 2v9p_A Replication protein E1; 90.7 0.12 4.2E-06 51.7 3.1 24 123-146 125-148 (305)
453 3sr0_A Adenylate kinase; phosp 90.7 0.13 4.3E-06 48.5 3.1 21 126-146 2-22 (206)
454 3con_A GTPase NRAS; structural 90.7 0.15 5E-06 46.8 3.5 24 125-148 22-45 (190)
455 1z2a_A RAS-related protein RAB 90.6 0.13 4.4E-06 45.8 3.0 24 124-147 5-28 (168)
456 3lda_A DNA repair protein RAD5 90.6 0.41 1.4E-05 49.9 7.1 58 123-181 177-238 (400)
457 3nh6_A ATP-binding cassette SU 90.6 0.11 3.7E-06 52.2 2.6 24 123-146 79-102 (306)
458 3bh0_A DNAB-like replicative h 90.6 0.45 1.5E-05 47.9 7.2 53 123-179 67-119 (315)
459 2c61_A A-type ATP synthase non 90.6 0.21 7.3E-06 52.7 4.9 92 125-216 153-258 (469)
460 4edh_A DTMP kinase, thymidylat 90.6 0.32 1.1E-05 45.9 5.8 23 124-146 6-28 (213)
461 2wjg_A FEOB, ferrous iron tran 90.5 0.15 5.2E-06 46.6 3.4 24 124-147 7-30 (188)
462 2lkc_A Translation initiation 90.5 0.2 6.9E-06 45.2 4.2 25 123-147 7-31 (178)
463 1nlf_A Regulatory protein REPA 90.4 0.12 4.2E-06 51.0 2.9 23 124-146 30-52 (279)
464 3foz_A TRNA delta(2)-isopenten 90.4 0.14 4.9E-06 51.0 3.2 24 123-146 9-32 (316)
465 3mfy_A V-type ATP synthase alp 90.4 0.46 1.6E-05 51.0 7.2 48 124-175 227-275 (588)
466 3sop_A Neuronal-specific septi 90.4 0.14 4.6E-06 50.5 3.0 21 126-146 4-24 (270)
467 1u8z_A RAS-related protein RAL 90.4 0.17 5.7E-06 45.0 3.5 24 125-148 5-28 (168)
468 2nzj_A GTP-binding protein REM 90.3 0.14 4.9E-06 46.0 3.0 24 124-147 4-27 (175)
469 2ck3_A ATP synthase subunit al 90.3 0.24 8.1E-06 52.7 5.0 104 113-217 152-272 (510)
470 1q57_A DNA primase/helicase; d 90.3 1.2 4.1E-05 48.0 10.8 53 123-179 241-294 (503)
471 1p5z_B DCK, deoxycytidine kina 90.2 0.098 3.4E-06 51.2 1.9 24 123-146 23-46 (263)
472 1c1y_A RAS-related protein RAP 90.2 0.17 6E-06 44.9 3.5 22 126-147 5-26 (167)
473 3def_A T7I23.11 protein; chlor 90.2 0.31 1.1E-05 47.5 5.6 39 110-148 22-60 (262)
474 2pjz_A Hypothetical protein ST 90.1 0.14 4.6E-06 50.3 2.8 23 124-146 30-52 (263)
475 1h65_A Chloroplast outer envel 90.1 0.34 1.2E-05 47.5 5.8 39 110-148 25-63 (270)
476 1nij_A Hypothetical protein YJ 90.0 0.15 5.1E-06 51.6 3.1 25 123-147 3-27 (318)
477 1z08_A RAS-related protein RAB 89.9 0.2 6.8E-06 44.7 3.6 24 124-147 6-29 (170)
478 4h09_A Hypothetical leucine ri 89.9 0.37 1.3E-05 49.7 6.2 60 421-485 257-317 (379)
479 3kta_A Chromosome segregation 89.9 0.16 5.6E-06 46.3 3.1 22 125-146 27-48 (182)
480 2gj8_A MNME, tRNA modification 89.9 0.16 5.4E-06 46.0 2.9 23 125-147 5-27 (172)
481 2qm8_A GTPase/ATPase; G protei 89.9 0.27 9.2E-06 50.1 4.9 34 113-146 44-77 (337)
482 1g8f_A Sulfate adenylyltransfe 89.9 0.18 6.1E-06 54.2 3.7 44 103-146 374-417 (511)
483 1u0j_A DNA replication protein 89.8 0.3 1E-05 47.7 4.9 35 112-146 92-126 (267)
484 3t1o_A Gliding protein MGLA; G 89.8 0.16 5.3E-06 46.8 2.8 23 124-146 14-36 (198)
485 2erx_A GTP-binding protein DI- 89.8 0.16 5.6E-06 45.3 2.9 23 125-147 4-26 (172)
486 1ek0_A Protein (GTP-binding pr 89.8 0.17 5.8E-06 45.1 3.0 23 126-148 5-27 (170)
487 1z0j_A RAB-22, RAS-related pro 89.7 0.17 5.8E-06 45.1 3.0 24 125-148 7-30 (170)
488 1m7b_A RND3/RHOE small GTP-bin 89.7 0.2 6.7E-06 45.8 3.5 24 124-147 7-30 (184)
489 3q85_A GTP-binding protein REM 89.7 0.17 5.7E-06 45.2 2.9 22 125-146 3-24 (169)
490 2bbs_A Cystic fibrosis transme 89.6 0.15 5.2E-06 50.7 2.8 24 123-146 63-86 (290)
491 1kao_A RAP2A; GTP-binding prot 89.6 0.21 7.1E-06 44.3 3.4 23 125-147 4-26 (167)
492 2fn4_A P23, RAS-related protei 89.6 0.2 7E-06 45.1 3.4 25 123-147 8-32 (181)
493 3kkq_A RAS-related protein M-R 89.6 0.21 7E-06 45.4 3.5 25 123-147 17-41 (183)
494 3t5g_A GTP-binding protein RHE 89.6 0.21 7E-06 45.3 3.4 24 124-147 6-29 (181)
495 4dsu_A GTPase KRAS, isoform 2B 89.6 0.2 7E-06 45.6 3.5 24 125-148 5-28 (189)
496 3cr8_A Sulfate adenylyltranfer 89.5 0.21 7.3E-06 54.3 4.0 24 123-146 368-391 (552)
497 1ky3_A GTP-binding protein YPT 89.4 0.19 6.3E-06 45.5 3.0 25 123-147 7-31 (182)
498 3ihw_A Centg3; RAS, centaurin, 89.3 0.18 6.3E-06 46.1 2.9 24 124-147 20-43 (184)
499 3q72_A GTP-binding protein RAD 89.3 0.17 6E-06 45.0 2.7 21 126-146 4-24 (166)
500 1svi_A GTP-binding protein YSX 89.3 0.21 7.2E-06 45.9 3.3 25 123-147 22-46 (195)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.8e-42 Score=381.18 Aligned_cols=250 Identities=18% Similarity=0.186 Sum_probs=202.7
Q ss_pred eechhhHHHHHHHHhcC-CCCcEEEEEEcCCCchHHHHHHHHHc--cccccCCcceeEEEEeCCCC--CHHHHHHHHHHH
Q 048216 104 VGLDNRIEELLDLLIEG-PPQLSVVAVLDSIGLDKTAFAAEAYN--SNYVKHYFDCRAWVQESLPY--DADQLLYDIIKL 178 (654)
Q Consensus 104 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~ 178 (654)
|||++++++|+++|..+ +..++||+|+||||+||||||+++|+ |.+++.+|++++||++++.+ ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999765 45689999999999999999999998 78999999999999999985 899999999999
Q ss_pred hCCCCC--c---ccccccChHHHHHHHHHHHcCC-ceEEEeccccC----------c---------ccccccccCCCCce
Q 048216 179 VMPSRR--L---SEIMKESSEMKKIILHEYVMTK-RYLIVLDNFEN----------G---------ENIGLDFVPTRGPL 233 (654)
Q Consensus 179 l~~~~~--~---~~~~~~~~~~~~~~l~~~L~~k-r~LiVLDDvw~----------G---------~~v~~~~~~~~~~~ 233 (654)
++.... . .+..+.+. ++..+++.|++| ||||||||||+ | +.|+..+++...+|
T Consensus 211 l~~~~~~~~~~~~~~~~~~~--l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~ 288 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVV--LKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFI 288 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHH--HHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEE
T ss_pred HhcCcccccccccccccHHH--HHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEE
Confidence 987521 0 12223344 789999999996 99999999998 2 45555553221223
Q ss_pred e---------------------------------E-ecCCchHHHHHHH-hhcccc-----cc---chhcc-CC-Cchhh
Q 048216 234 R---------------------------------V-TYKGWPFYILYHR-SISQKE-----NI---EEALD-EP-RGLQV 268 (654)
Q Consensus 234 ~---------------------------------v-~c~GlPLai~~~g-~L~~~~-----~~---~~~l~-~~-~~~l~ 268 (654)
+ + +|+|+||||+++| .|+.+. .. .|... .+ .+++.
T Consensus 289 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~ 368 (549)
T 2a5y_B 289 EVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITP 368 (549)
T ss_dssp ECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSS
T ss_pred ECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHh
Confidence 3 6 9999999999999 998761 01 11111 12 78999
Q ss_pred hhhcCCchhHHHHHh-----------hhccCCCCceeChHHHHHHHHHc--CCCC-----CCHHHHHHHHHHHHHhCCCc
Q 048216 269 VAYCMLPFYLKLFCL-----------YLSVFPVHFDICTKQLYQLWIAE--GFIP-----DNNEAAAEKYLEQLINGGFV 330 (654)
Q Consensus 269 ~sy~~L~~~~k~cfl-----------y~s~Fp~~~~i~~~~Li~~Wiae--gfi~-----~~~e~~~~~~~~~L~~~sll 330 (654)
+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+. .+.+++++ |+++|+++||+
T Consensus 369 ~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl 443 (549)
T 2a5y_B 369 YSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGAL 443 (549)
T ss_dssp SSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSC
T ss_pred cccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCe
Confidence 999999999999999 999999999998 8999999 9996 34678888 99999999999
Q ss_pred ccccCCCCCCcceEEeChhHHHHHHHhhccCCe
Q 048216 331 DAGKRSDISRINTCSIPGRCSPALLTVAFEGEF 363 (654)
Q Consensus 331 ~~~~~~~~g~~~~~~mhdlv~dla~~i~~~e~~ 363 (654)
+....+ ...+|+|||+||++|++++.++++
T Consensus 444 ~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 444 LSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp SEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 987643 346899999999999999987654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.98 E-value=3.5e-33 Score=315.64 Aligned_cols=239 Identities=18% Similarity=0.087 Sum_probs=187.7
Q ss_pred ceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcce-eEEEEeCCCCCHHHHHHHHHHHhCC
Q 048216 103 TVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDC-RAWVQESLPYDADQLLYDIIKLVMP 181 (654)
Q Consensus 103 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~ 181 (654)
.|||++++++|.++|...+ ..+||+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..+..
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 4999999999999998743 4799999999999999999999998889999986 8999999999998888888775432
Q ss_pred CC---Cc-cc-----ccccChHHHHHHHHHHH---cCCceEEEeccccC---------c---------ccccccccCC--
Q 048216 182 SR---RL-SE-----IMKESSEMKKIILHEYV---MTKRYLIVLDNFEN---------G---------ENIGLDFVPT-- 229 (654)
Q Consensus 182 ~~---~~-~~-----~~~~~~~~~~~~l~~~L---~~kr~LiVLDDvw~---------G---------~~v~~~~~~~-- 229 (654)
.. .. .+ ..+.+. +...+++.| .+||+||||||||+ | +.++..+...
T Consensus 209 i~~~~~~~~d~~~~ip~~lee--L~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~v 286 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHS--IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHH--HHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSS
T ss_pred cCcccccccccccCCCCCHHH--HHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeE
Confidence 11 00 00 112234 677788766 68999999999998 2 2222211100
Q ss_pred CCce--------e--------------------E-ecCCchHHHHHHH-hhccc--cccchhccCC---CchhhhhhcCC
Q 048216 230 RGPL--------R--------------------V-TYKGWPFYILYHR-SISQK--ENIEEALDEP---RGLQVVAYCML 274 (654)
Q Consensus 230 ~~~~--------~--------------------v-~c~GlPLai~~~g-~L~~~--~~~~~~l~~~---~~~l~~sy~~L 274 (654)
..+. . . -|+|+||||+++| .|+.+ ....|+.... ..++++||+.|
T Consensus 287 y~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~L 366 (1221)
T 1vt4_I 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366 (1221)
T ss_dssp CEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHS
T ss_pred EEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhC
Confidence 0011 0 3 6999999999999 99887 3334554433 78999999999
Q ss_pred chhH-HHHHhhhccCCCCceeChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcccccCCCCCCcceEEeChhHHHH
Q 048216 275 PFYL-KLFCLYLSVFPVHFDICTKQLYQLWIAEGFIPDNNEAAAEKYLEQLINGGFVDAGKRSDISRINTCSIPGRCSPA 353 (654)
Q Consensus 275 ~~~~-k~cfly~s~Fp~~~~i~~~~Li~~Wiaegfi~~~~e~~~~~~~~~L~~~sll~~~~~~~~g~~~~~~mhdlv~dl 353 (654)
|+++ |+||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++.. +...+|+|||+++++
T Consensus 367 p~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllEL 435 (1221)
T 1vt4_I 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLEL 435 (1221)
T ss_dssp CTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHH
Confidence 9999 99999999999999999999999999987 24688999999999999973 223679999999996
Q ss_pred HH
Q 048216 354 LL 355 (654)
Q Consensus 354 a~ 355 (654)
+.
T Consensus 436 r~ 437 (1221)
T 1vt4_I 436 KV 437 (1221)
T ss_dssp HH
T ss_pred hc
Confidence 63
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.2e-31 Score=328.10 Aligned_cols=252 Identities=15% Similarity=0.134 Sum_probs=195.9
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccc-cCCc-ceeEEEEeCCCCC--HHHHHH
Q 048216 98 FKDRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYV-KHYF-DCRAWVQESLPYD--ADQLLY 173 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~ 173 (654)
.....+|||++++++|.++|...+...++|+|+||||+||||||+++|++.++ ..+| +.++||++++.++ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 34567999999999999999877678999999999999999999999997543 5555 6677999998654 344577
Q ss_pred HHHHHhCCCCCc--ccccccChHHHHHHHHHHHcCC--ceEEEeccccC---------c---------ccccccccCCCC
Q 048216 174 DIIKLVMPSRRL--SEIMKESSEMKKIILHEYVMTK--RYLIVLDNFEN---------G---------ENIGLDFVPTRG 231 (654)
Q Consensus 174 ~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~L~~k--r~LiVLDDvw~---------G---------~~v~~~~~~~~~ 231 (654)
.++..+...... ....+.+. +...++..+.+| |+||||||||+ | +.|+..+.....
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~ 278 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEE--AKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKH 278 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHH--HHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBC
T ss_pred HHHHHhhhhcccccCCCCCHHH--HHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCce
Confidence 788888765431 11223344 888899999877 99999999998 2 444432211111
Q ss_pred cee--------------------------------E-ecCCchHHHHHHH-hhcccccc-----------chh-ccC---
Q 048216 232 PLR--------------------------------V-TYKGWPFYILYHR-SISQKENI-----------EEA-LDE--- 262 (654)
Q Consensus 232 ~~~--------------------------------v-~c~GlPLai~~~g-~L~~~~~~-----------~~~-l~~--- 262 (654)
++. + +|+|+||||+++| .|+.+... .|. +..
T Consensus 279 ~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 358 (1249)
T 3sfz_A 279 VVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSS 358 (1249)
T ss_dssp CEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTC
T ss_pred EEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccc
Confidence 111 6 9999999999999 99875211 111 111
Q ss_pred -C----CchhhhhhcCCchhHHHHHhhhccCCCCceeChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcccccCCC
Q 048216 263 -P----RGLQVVAYCMLPFYLKLFCLYLSVFPVHFDICTKQLYQLWIAEGFIPDNNEAAAEKYLEQLINGGFVDAGKRSD 337 (654)
Q Consensus 263 -~----~~~l~~sy~~L~~~~k~cfly~s~Fp~~~~i~~~~Li~~Wiaegfi~~~~e~~~~~~~~~L~~~sll~~~~~~~ 337 (654)
+ ..++.+||+.||+++|+||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++...
T Consensus 359 ~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~--- 428 (1249)
T 3sfz_A 359 YDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR--- 428 (1249)
T ss_dssp TTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---
T ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---
Confidence 1 6789999999999999999999999999999999999999765 477899999999999999654
Q ss_pred CCCcceEEeChhHHHHHHHhhccC
Q 048216 338 ISRINTCSIPGRCSPALLTVAFEG 361 (654)
Q Consensus 338 ~g~~~~~~mhdlv~dla~~i~~~e 361 (654)
.|+..+|+||+++|++|+..+.++
T Consensus 429 ~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCCceEEEecHHHHHHHHhhhhHH
Confidence 344568999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=271.91 Aligned_cols=247 Identities=17% Similarity=0.153 Sum_probs=184.7
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccc-cCCc-ceeEEEEeCCCCCHHHHHHHH-
Q 048216 99 KDRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYV-KHYF-DCRAWVQESLPYDADQLLYDI- 175 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i- 175 (654)
....+|||+.++++|.++|.......++|+|+||||+||||||+++|++.++ ..+| +.++|+++++. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 3467999999999999999865557899999999999999999999997666 7889 58999999876 444444443
Q ss_pred --HHHhCCCCC--cccccccChHHHHHHHHHHHcC--CceEEEeccccC---------c---------ccccccccCCC-
Q 048216 176 --IKLVMPSRR--LSEIMKESSEMKKIILHEYVMT--KRYLIVLDNFEN---------G---------ENIGLDFVPTR- 230 (654)
Q Consensus 176 --~~~l~~~~~--~~~~~~~~~~~~~~~l~~~L~~--kr~LiVLDDvw~---------G---------~~v~~~~~~~~- 230 (654)
+..+..... .....+.+. +...++..+.+ +++||||||||+ | ..++..+....
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~ 278 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEE--AKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKY 278 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHH--HHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEE
T ss_pred HHHHHhccccccccCCCCCHHH--HHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCce
Confidence 445542111 012223344 77888888876 799999999998 1 22222211100
Q ss_pred Cce-----e--------------------------E-ecCCchHHHHHHH-hhccccccchh-----c--------cC--
Q 048216 231 GPL-----R--------------------------V-TYKGWPFYILYHR-SISQKENIEEA-----L--------DE-- 262 (654)
Q Consensus 231 ~~~-----~--------------------------v-~c~GlPLai~~~g-~L~~~~~~~~~-----l--------~~-- 262 (654)
.+. . + +|+|+||||+.+| .|+.+.. .|+ + ..
T Consensus 279 ~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~-~w~~~l~~l~~~~~~~~~~~~ 357 (591)
T 1z6t_A 279 VVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQNKQFKRIRKSS 357 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT-CHHHHHHHHHSCCCCCSSCCC
T ss_pred EeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch-hHHHHHHHHHHhHHHHhhhcc
Confidence 000 0 5 9999999999999 9987632 111 1 10
Q ss_pred ---C---CchhhhhhcCCchhHHHHHhhhccCCCCceeChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcccccCC
Q 048216 263 ---P---RGLQVVAYCMLPFYLKLFCLYLSVFPVHFDICTKQLYQLWIAEGFIPDNNEAAAEKYLEQLINGGFVDAGKRS 336 (654)
Q Consensus 263 ---~---~~~l~~sy~~L~~~~k~cfly~s~Fp~~~~i~~~~Li~~Wiaegfi~~~~e~~~~~~~~~L~~~sll~~~~~~ 336 (654)
. ..++..||+.||++.|.||++||+||+++.|+.+.++.+|.++ .+.++.++++|+++||++...
T Consensus 358 ~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~-- 428 (591)
T 1z6t_A 358 SYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR-- 428 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE--
T ss_pred ccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec--
Confidence 0 5689999999999999999999999999999999999999653 356789999999999998544
Q ss_pred CCCCcceEEeChhHHHHHHHhhc
Q 048216 337 DISRINTCSIPGRCSPALLTVAF 359 (654)
Q Consensus 337 ~~g~~~~~~mhdlv~dla~~i~~ 359 (654)
++....|+||++++++++....
T Consensus 429 -~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 429 -NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp -ETTEEEEECCHHHHHHHHHHTG
T ss_pred -CCCccEEEEcHHHHHHHHhhhh
Confidence 2334689999999999998743
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2e-20 Score=194.60 Aligned_cols=219 Identities=16% Similarity=0.140 Sum_probs=123.1
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
.++++.|.+.++... .++..+.++++|++|+|++| .+..+|..+ +++++|++|+|++|.+..+|..++++
T Consensus 80 ~~~l~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n----~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAA----GLMELPDTM-QQFAGLETLTLARNPLRALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCS-----SCCSCGGGGTTCSEEEEESS----CCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred ccceeEEEccCCCch-----hcChhhhhCCCCCEEECCCC----CccchhHHH-hccCCCCEEECCCCccccCcHHHhcC
Confidence 456666766666543 22334555666777777776 566666666 67777777777777666667667777
Q ss_pred ccccceeccccccccCCcccchhcCC---------CCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCC
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLEN---------LNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPR 546 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~ 546 (654)
++|++|+++ ++.....+|..+.. +++|++|++++|....+| ..+..++ +| .|++++ .+..
T Consensus 150 ~~L~~L~L~---~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-----~~l~~l~-~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 150 NRLRELSIR---ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-----ASIANLQ-NLKSLKIRNSPLSA 220 (328)
T ss_dssp TTCCEEEEE---EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-----GGGGGCT-TCCEEEEESSCCCC
T ss_pred cCCCEEECC---CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-----HhhcCCC-CCCEEEccCCCCCc
Confidence 777777643 23233444544433 666666666666544333 2344444 55 666654 2344
Q ss_pred CCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeE
Q 048216 547 RSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTM 626 (654)
Q Consensus 547 lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~ 626 (654)
+|. .+..+ ++|++|+|++|++....+..++.+++|++|+|++|.. ...++.....+++|++|++++|+.++.+|.
T Consensus 221 l~~---~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 221 LGP---AIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCG---GGGGC-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred Cch---hhccC-CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 555 55555 5666666666555444444455566666666653322 223333334455666666666555555555
Q ss_pred cCccccccceeeee
Q 048216 627 GIRAMPKLECLIIN 640 (654)
Q Consensus 627 ~~~~~p~L~~L~i~ 640 (654)
..+.+++|+.+.+.
T Consensus 296 ~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 296 LIAQLPANCIILVP 309 (328)
T ss_dssp GGGGSCTTCEEECC
T ss_pred HHhhccCceEEeCC
Confidence 55555555555544
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=3.3e-20 Score=192.86 Aligned_cols=213 Identities=21% Similarity=0.180 Sum_probs=169.4
Q ss_pred ccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCC
Q 048216 425 MFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENL 504 (654)
Q Consensus 425 ~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l 504 (654)
....++.|+|++| .+..+|..+ +++++|++|+|++|.+..+|..++++++|++|++++ . ....+|..++++
T Consensus 79 ~~~~l~~L~L~~n----~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~---n-~l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSV----PLPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR---N-PLRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEESS----CCSSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES---C-CCCCCCGGGGGC
T ss_pred cccceeEEEccCC----CchhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC---C-ccccCcHHHhcC
Confidence 3578899999999 888999998 889999999999998889999999999999999644 3 334788889999
Q ss_pred CCCCeEEEeccCC-cccchh----hhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCcc
Q 048216 505 NFISALHHCYCTE-DILGRL----LVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMP 577 (654)
Q Consensus 505 ~~L~~L~l~~~~~-~~~~~~----~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~ 577 (654)
++|++|++++|.. ..+|.. .....+..++ +| .|++++ .+..+|. ++..+ ++|++|+|++|.+. ..++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~---~l~~l-~~L~~L~L~~N~l~-~l~~ 223 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLV-NLQSLRLEWTGIRSLPA---SIANL-QNLKSLKIRNSPLS-ALGP 223 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST-TCCEEEEEEECCCCCCG---GGGGC-TTCCEEEEESSCCC-CCCG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCC-CCCEEECcCCCcCcchH---hhcCC-CCCCEEEccCCCCC-cCch
Confidence 9999999998743 233210 0011233467 89 999987 4568888 88889 99999999999875 3445
Q ss_pred ccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcccccccC
Q 048216 578 ALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSFG 653 (654)
Q Consensus 578 ~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l~ 653 (654)
.++.+++|++|+|++|... ..++.....+++|++|++++|.....+|...+.+++|+.|++++|+.+..+|..++
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp GGGGCTTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred hhccCCCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 6889999999999954443 34555667789999999999888888887788899999999999998888998775
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=2.2e-18 Score=183.58 Aligned_cols=253 Identities=14% Similarity=0.076 Sum_probs=151.1
Q ss_pred cCceeEEEEecCCCCccccccc---cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHh
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF---DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLS 452 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~ 452 (654)
..+++++.+. +.....++... +++|++|.+.++... ...+..|..+++|++|+|++| .+..+|...|+
T Consensus 44 l~~l~~l~l~-~~~l~~l~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~ 114 (390)
T 3o6n_A 44 LNNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFN----AIRYLPPHVFQ 114 (390)
T ss_dssp GCCCSEEEEE-SCEESEECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSS----CCCCCCTTTTT
T ss_pred cCCceEEEec-CCchhhCChhHhcccccCcEEECCCCccc----ccChhhccCCCCcCEEECCCC----CCCcCCHHHhc
Confidence 4677888888 65555455543 788999988887653 244557888888888998888 77777665448
Q ss_pred cCCCceEEcCCCccccccChhh-hccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchh--hh----
Q 048216 453 SLLNLYTLDMPFSYIDHTADEF-WKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRL--LV---- 525 (654)
Q Consensus 453 ~L~~L~~L~L~~~~l~~lP~~i-~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~--~~---- 525 (654)
++++|++|++++|.+..+|..+ .++++|++|++++ .......+..+.++++|++|++++|.....+.. ..
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~---n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L 191 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN---NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS---SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEE
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCC---CccCccChhhccCCCCCCEEECCCCcCCcccccccccccee
Confidence 8888888888888888888774 7888888888643 222222345577778888888877754333100 00
Q ss_pred ------cccccCCC--------------------CCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCcc
Q 048216 526 ------QILILSCL--------------------ESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMP 577 (654)
Q Consensus 526 ------l~~l~~~~--------------------~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~ 577 (654)
+..+..++ .+| .|+++++ +... . ++..+ ++|++|+|++|.+....+.
T Consensus 192 ~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~---~l~~l-~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-A---WLLNY-PGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp ECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-G---GGGGC-TTCSEEECCSSCCCEEESG
T ss_pred ecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-H---HHcCC-CCccEEECCCCcCCCcChh
Confidence 11111222 133 3444332 1222 2 45555 6666666666655444344
Q ss_pred ccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcccc
Q 048216 578 ALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFL 649 (654)
Q Consensus 578 ~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP 649 (654)
.+..+++|++|+|++|.. ..++.....+++|++|+++++ .+..++...+.+++|+.|++.+| ++..+|
T Consensus 267 ~~~~l~~L~~L~L~~n~l--~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~ 334 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK 334 (390)
T ss_dssp GGTTCSSCCEEECCSSCC--CEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred HccccccCCEEECCCCcC--cccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeC
Confidence 555666666666664332 223333345666666666653 45555544455666666666655 344443
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.2e-18 Score=196.22 Aligned_cols=253 Identities=14% Similarity=0.073 Sum_probs=150.6
Q ss_pred CceeEEEEecCCCCccccccc---cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhc
Q 048216 377 ENVKRFTAHEKLNDFGFLDDF---DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSS 453 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~ 453 (654)
.+.+.+.+. ++....++..+ +++|++|.+.++... ...+..|..+++|++|+|++| .+..+|...|++
T Consensus 51 ~~l~~l~l~-~~~l~~lp~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~ 121 (597)
T 3oja_B 51 NNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFN----AIRYLPPHVFQN 121 (597)
T ss_dssp CCCSEEEES-SCEESEECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSS----CCCCCCTTTTTT
T ss_pred CCceEEEee-CCCCCCcCHHHHccCCCCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCC----cCCCCCHHHHcC
Confidence 456677776 54444444443 677888887776653 244456777778888888877 677776665577
Q ss_pred CCCceEEcCCCccccccChhh-hccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchh---------
Q 048216 454 LLNLYTLDMPFSYIDHTADEF-WKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRL--------- 523 (654)
Q Consensus 454 L~~L~~L~L~~~~l~~lP~~i-~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~--------- 523 (654)
+++|++|+|++|.+..+|..+ +++++|++|++++ .......|..++++++|++|++++|....++..
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~---N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~ 198 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN---NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 198 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS---SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC---CcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhh
Confidence 778888888777777777663 7777777777543 222233344566777777777776644332100
Q ss_pred ---hhcccccCCC--------------------CCe-EEEEeecCCCCCCcchhhhcCCCCccEEEEEeeccCCCCcccc
Q 048216 524 ---LVQILILSCL--------------------ESL-KLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPAL 579 (654)
Q Consensus 524 ---~~l~~l~~~~--------------------~~L-~L~l~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l 579 (654)
..+..+..++ ++| .|+++++.-.-|. ++..+ ++|+.|+|++|.+....+..+
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~---~l~~l-~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA---WLLNY-PGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCG---GGGGC-TTCSEEECCSSCCCEEESGGG
T ss_pred cccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCCh---hhccC-CCCCEEECCCCccCCCCHHHh
Confidence 0011111122 144 4444442221233 56666 777777777777655445566
Q ss_pred ccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcccc
Q 048216 580 EKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFL 649 (654)
Q Consensus 580 ~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP 649 (654)
+.+++|+.|+|++|.. ..++.....+|+|+.|+++++ .+..+|...+.+++|+.|++++| ++..+|
T Consensus 275 ~~l~~L~~L~Ls~N~l--~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~ 340 (597)
T 3oja_B 275 VKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK 340 (597)
T ss_dssp TTCSSCCEEECTTSCC--CEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred cCccCCCEEECCCCCC--CCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcC
Confidence 7777777777774433 224444455777777777763 45566555556677777777665 344443
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=8.3e-19 Score=181.08 Aligned_cols=248 Identities=13% Similarity=0.051 Sum_probs=193.2
Q ss_pred CceeEEEEecCCCCc--cccccc--cCceeEEEEec-CCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCC-cCChhH
Q 048216 377 ENVKRFTAHEKLNDF--GFLDDF--DSFLHSLLYLT-SGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLK-SLPSSL 450 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~--~~~~~~--~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~-~lP~~i 450 (654)
.+++++.+..+.... .++..+ +++|++|.+.+ +... ...+..|.++++|++|+|++| .+. .+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n----~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHT----NVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEE----CCEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCC----eeCCcCCHHH
Confidence 689999999444433 466666 99999999995 5442 245677899999999999999 777 889988
Q ss_pred HhcCCCceEEcCCCcccc-ccChhhhccccccceeccccccccCCcccchhcCCCC-CCCeEEEeccCCcccchhhhccc
Q 048216 451 LSSLLNLYTLDMPFSYID-HTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLN-FISALHHCYCTEDILGRLLVQIL 528 (654)
Q Consensus 451 f~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~ 528 (654)
+++++|++|++++|.+. .+|..+.++++|++|++++ .+....+|..+.+++ +|++|++++|..... ....
T Consensus 122 -~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~---N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~ 193 (313)
T 1ogq_A 122 -SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG---NRISGAIPDSYGSFSKLFTSMTISRNRLTGK----IPPT 193 (313)
T ss_dssp -GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS---SCCEEECCGGGGCCCTTCCEEECCSSEEEEE----CCGG
T ss_pred -hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC---CcccCcCCHHHhhhhhcCcEEECcCCeeecc----CChH
Confidence 99999999999999887 7999999999999999643 333347889999998 999999999865422 2233
Q ss_pred ccCCCCCe-EEEEeec-CC-CCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCC
Q 048216 529 ILSCLESL-KLANESK-MP-RRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSD 605 (654)
Q Consensus 529 l~~~~~~L-~L~l~~~-~~-~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~ 605 (654)
+..+ .| .|+++++ +. ..|. .+..+ ++|+.|+|++|.+. ..++.+..+++|++|+|++|...+ .++....
T Consensus 194 ~~~l--~L~~L~Ls~N~l~~~~~~---~~~~l-~~L~~L~L~~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~ 265 (313)
T 1ogq_A 194 FANL--NLAFVDLSRNMLEGDASV---LFGSD-KNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNNRIYG-TLPQGLT 265 (313)
T ss_dssp GGGC--CCSEEECCSSEEEECCGG---GCCTT-SCCSEEECCSSEEC-CBGGGCCCCTTCCEEECCSSCCEE-CCCGGGG
T ss_pred HhCC--cccEEECcCCcccCcCCH---HHhcC-CCCCEEECCCCcee-eecCcccccCCCCEEECcCCcccC-cCChHHh
Confidence 4433 38 9999874 33 4666 77888 99999999999974 445568889999999999665432 3444456
Q ss_pred CCccccEEEEecCCCCc-ceeEcCccccccceeeeecCcCCccccc
Q 048216 606 GFPKLKVLHLKSMLWLE-EWTMGIRAMPKLECLIINPCAHLKGFLN 650 (654)
Q Consensus 606 ~f~~L~~L~l~~~~~l~-~l~~~~~~~p~L~~L~i~~C~~L~~lP~ 650 (654)
.+++|++|+++++ .+. .+|. .+.+++|+.|++.+++.+...|.
T Consensus 266 ~l~~L~~L~Ls~N-~l~~~ip~-~~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 266 QLKFLHSLNVSFN-NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp GCTTCCEEECCSS-EEEEECCC-STTGGGSCGGGTCSSSEEESTTS
T ss_pred cCcCCCEEECcCC-cccccCCC-CccccccChHHhcCCCCccCCCC
Confidence 7899999999985 455 4444 37899999999999988887664
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=184.02 Aligned_cols=256 Identities=19% Similarity=0.132 Sum_probs=156.9
Q ss_pred ccCceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHH
Q 048216 375 LRENVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLL 451 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if 451 (654)
.+..++.|.+. ++....+ +..+ +++|++|.+.++... ...+..|.++++|++|+|++| .+..+|...|
T Consensus 30 ~~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~ 100 (477)
T 2id5_A 30 IPTETRLLDLG-KNRIKTLNQDEFASFPHLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSN----RLKLIPLGVF 100 (477)
T ss_dssp CCTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSS----CCCSCCTTSS
T ss_pred CCCCCcEEECC-CCccceECHhHccCCCCCCEEECCCCccC----EeChhhhhCCccCCEEECCCC----cCCccCcccc
Confidence 45678888888 4444333 3445 889999999887654 244677888999999999999 7888888766
Q ss_pred hcCCCceEEcCCCcccccc-ChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchh-------
Q 048216 452 SSLLNLYTLDMPFSYIDHT-ADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRL------- 523 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~------- 523 (654)
+++++|++|+|++|.+..+ |..+.++++|++|++++ .......+..+.++++|++|++++|....++..
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~---n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD---NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC---TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCC---CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 8899999999998877765 56788888888888654 111111233444555555555555433322100
Q ss_pred -------------hhcccccCCCCCe-EEEEeec--CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccce
Q 048216 524 -------------LVQILILSCLESL-KLANESK--MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQV 587 (654)
Q Consensus 524 -------------~~l~~l~~~~~~L-~L~l~~~--~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~ 587 (654)
.....+..++ +| .|+++++ .+.+|. ..... .+|++|+|++|.+...+...+.++++|+.
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~---~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMTP---NCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCTTCCEECT---TTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred CcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCccccccCc---ccccC-ccccEEECcCCcccccCHHHhcCccccCe
Confidence 0112344445 66 6666552 234444 44444 57777777777765444445677788888
Q ss_pred EEEeecccCCCeeEEcCCCCccccEEEEecCCCCccee-EcCccccccceeeeecCcCCccccc
Q 048216 588 LKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWT-MGIRAMPKLECLIINPCAHLKGFLN 650 (654)
Q Consensus 588 L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~-~~~~~~p~L~~L~i~~C~~L~~lP~ 650 (654)
|+|++|... .........+++|+.|+++++ .+..+. .....+++|+.|++++| +++.+|.
T Consensus 253 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 253 LNLSYNPIS-TIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp EECCSSCCC-EECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred eECCCCcCC-ccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence 888754432 111112345667777777763 444442 23445667777777665 5665554
No 11
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=1.3e-17 Score=173.46 Aligned_cols=241 Identities=15% Similarity=0.121 Sum_probs=148.8
Q ss_pred cCceeEEEEecCCCCccccc-cc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHh
Q 048216 376 RENVKRFTAHEKLNDFGFLD-DF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLS 452 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~ 452 (654)
+..++.+.+. ++....++. .+ +++|++|.+.++... ...+..|.++++|++|+|++| .+..+|..+ .
T Consensus 51 ~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n----~l~~l~~~~-~ 120 (330)
T 1xku_A 51 PPDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINNKIS----KISPGAFAPLVKLERLYLSKN----QLKELPEKM-P 120 (330)
T ss_dssp CTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSS----CCSBCCSSC-C
T ss_pred CCCCeEEECC-CCcCCEeChhhhccCCCCCEEECCCCcCC----eeCHHHhcCCCCCCEEECCCC----cCCccChhh-c
Confidence 3456677776 433333333 34 677777777766543 233556677777777777777 677777665 3
Q ss_pred cCCCceEEcCCCccccccCh-hhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccC
Q 048216 453 SLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILS 531 (654)
Q Consensus 453 ~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 531 (654)
++|++|++++|.+..+|. .+.++++|++|+++. ..+......+..+.++++|++|++++|....+| ..+
T Consensus 121 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-----~~~-- 190 (330)
T 1xku_A 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-----QGL-- 190 (330)
T ss_dssp --TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS-SCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-----SSC--
T ss_pred --ccccEEECCCCcccccCHhHhcCCccccEEECCC-CcCCccCcChhhccCCCCcCEEECCCCccccCC-----ccc--
Confidence 677777777776666654 366777777777543 111112244566777777777777777655543 111
Q ss_pred CCCCe-EEEEeec-CCCC-CCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCc
Q 048216 532 CLESL-KLANESK-MPRR-SNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFP 608 (654)
Q Consensus 532 ~~~~L-~L~l~~~-~~~l-p~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~ 608 (654)
.+ +| .|+++++ +..+ |. ++..+ ++|++|+|++|.+.......+..+++|++|+|++|... .++.....++
T Consensus 191 ~~-~L~~L~l~~n~l~~~~~~---~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~ 263 (330)
T 1xku_A 191 PP-SLTELHLDGNKITKVDAA---SLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHK 263 (330)
T ss_dssp CT-TCSEEECTTSCCCEECTG---GGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCS
T ss_pred cc-cCCEEECCCCcCCccCHH---HhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCC
Confidence 14 77 7777763 3333 44 66677 78888888888765555456777888888888855433 3444455677
Q ss_pred cccEEEEecCCCCcceeEcC-------ccccccceeeeecCcC
Q 048216 609 KLKVLHLKSMLWLEEWTMGI-------RAMPKLECLIINPCAH 644 (654)
Q Consensus 609 ~L~~L~l~~~~~l~~l~~~~-------~~~p~L~~L~i~~C~~ 644 (654)
+|++|++++ +.+..++... ...+.|+.|++.++|-
T Consensus 264 ~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 264 YIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcc
Confidence 888888877 3466554321 1246777788877653
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=1.7e-17 Score=180.51 Aligned_cols=129 Identities=16% Similarity=0.068 Sum_probs=79.7
Q ss_pred ccCceeEEEEecCCCCcc-ccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC-ChhH
Q 048216 375 LRENVKRFTAHEKLNDFG-FLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL-PSSL 450 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~-~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~i 450 (654)
.+.++++|.+. ++.... .+..+ +++|++|.+.++... ..+.+..|.++++|++|+|++| .+..+ |..+
T Consensus 28 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~ 99 (455)
T 3v47_A 28 LPAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYN----QFLQLETGAF 99 (455)
T ss_dssp CCTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTC----TTCEECTTTT
T ss_pred CCCccCEEEec-CCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCC----ccCccChhhc
Confidence 44678888888 444333 34455 788888888877642 1244566778888888888888 56655 4455
Q ss_pred HhcCCCceEEcCCCccccc-cChh--hhccccccceeccccccccCCcccchh-cCCCCCCCeEEEecc
Q 048216 451 LSSLLNLYTLDMPFSYIDH-TADE--FWKVSKLRYLNFGAITLPAHPGKYCNS-LENLNFISALHHCYC 515 (654)
Q Consensus 451 f~~L~~L~~L~L~~~~l~~-lP~~--i~~L~~L~~L~l~~l~~l~~~~~l~~~-l~~l~~L~~L~l~~~ 515 (654)
+++++|++|++++|.+.. +|.. +.++++|++|++++ .......|.. +.++++|++|++++|
T Consensus 100 -~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~---n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 100 -NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD---NNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp -TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS---SBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred -cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC---CccCccCcccccCCCCcccEEeCCCC
Confidence 777777777777776654 3443 66777777777543 2111122332 455555555555555
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=7.8e-17 Score=176.38 Aligned_cols=188 Identities=15% Similarity=0.096 Sum_probs=148.4
Q ss_pred CCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC-ChhHHhcCCCceEEcCCCc
Q 048216 387 KLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL-PSSLLSSLLNLYTLDMPFS 465 (654)
Q Consensus 387 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~if~~L~~L~~L~L~~~ 465 (654)
+.....+|..+.++++.|.+.++... ...+..|.++++|++|+|++| .+..+ |..+ +++++|++|+|++|
T Consensus 20 ~~~l~~ip~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n----~i~~~~~~~~-~~l~~L~~L~L~~n 90 (477)
T 2id5_A 20 RKRFVAVPEGIPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNEN----IVSAVEPGAF-NNLFNLRTLGLRSN 90 (477)
T ss_dssp SCCCSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTS----CCCEECTTTT-TTCTTCCEEECCSS
T ss_pred CCCcCcCCCCCCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCC----ccCEeChhhh-hCCccCCEEECCCC
Confidence 33344466656789999999998764 345678999999999999999 78877 5556 99999999999999
Q ss_pred cccccChh-hhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec
Q 048216 466 YIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK 543 (654)
Q Consensus 466 ~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~ 543 (654)
.+..+|.. +.++++|++|++++ .+.....+..+.++++|++|++++|....+ ....+..++ +| .|+++++
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~---n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~-~L~~L~l~~n 162 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISE---NKIVILLDYMFQDLYNLKSLEVGDNDLVYI----SHRAFSGLN-SLEQLTLEKC 162 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTT---SCCCEECTTTTTTCTTCCEEEECCTTCCEE----CTTSSTTCT-TCCEEEEESC
T ss_pred cCCccCcccccCCCCCCEEECCC---CccccCChhHccccccCCEEECCCCcccee----ChhhccCCC-CCCEEECCCC
Confidence 99999875 68999999999643 323334567889999999999999877665 345667777 99 9999874
Q ss_pred -CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecc
Q 048216 544 -MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNS 594 (654)
Q Consensus 544 -~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~ 594 (654)
+..+|.. ++..+ ++|+.|+|++|.+.......+..+++|++|++++|.
T Consensus 163 ~l~~~~~~--~l~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 163 NLTSIPTE--ALSHL-HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp CCSSCCHH--HHTTC-TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred cCcccChh--Hhccc-CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 5566641 46678 999999999998766555668888999999988543
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=1.2e-17 Score=172.37 Aligned_cols=230 Identities=15% Similarity=0.105 Sum_probs=181.1
Q ss_pred CceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCC-CCCCCCCC-cCChhHHhcCCCceEEcCCCcccc-ccChhhh
Q 048216 399 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGS-LLNIPSLK-SLPSSLLSSLLNLYTLDMPFSYID-HTADEFW 475 (654)
Q Consensus 399 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~lp~i~-~lP~~if~~L~~L~~L~L~~~~l~-~lP~~i~ 475 (654)
.+++.|.+.++.... ....+..+.++++|++|+|++ | .+. .+|..+ +++++|++|++++|.+. .+|..+.
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n----~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGIN----NLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEET----TEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCC----cccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHh
Confidence 689999999887641 013457889999999999995 6 454 889998 99999999999999887 7999999
Q ss_pred ccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CC-CCCCcch
Q 048216 476 KVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MP-RRSNIIL 552 (654)
Q Consensus 476 ~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~-~lp~~~~ 552 (654)
++++|++|++++ ......+|..+.++++|++|++++|..... ....+..++.+| .|+++++ +. .+|.
T Consensus 123 ~l~~L~~L~Ls~---N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~~~~--- 192 (313)
T 1ogq_A 123 QIKTLVTLDFSY---NALSGTLPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGKIPP--- 192 (313)
T ss_dssp GCTTCCEEECCS---SEEESCCCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEECCG---
T ss_pred CCCCCCEEeCCC---CccCCcCChHHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeeccCCh---
Confidence 999999999643 323346888999999999999999976522 224555554488 9999874 33 6787
Q ss_pred hhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCc-ceeEcCccc
Q 048216 553 AEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLE-EWTMGIRAM 631 (654)
Q Consensus 553 ~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~-~l~~~~~~~ 631 (654)
.+..+ + |+.|+|++|.+.......+..+++|+.|+|++|...+. ++ ....+++|++|+++++ .+. .+|...+.+
T Consensus 193 ~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l 267 (313)
T 1ogq_A 193 TFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LG-KVGLSKNLNGLDLRNN-RIYGTLPQGLTQL 267 (313)
T ss_dssp GGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GG-GCCCCTTCCEEECCSS-CCEECCCGGGGGC
T ss_pred HHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-cC-cccccCCCCEEECcCC-cccCcCChHHhcC
Confidence 88888 6 99999999998777777899999999999996655432 11 2456899999999985 455 666667889
Q ss_pred cccceeeeecCcCCc-ccccc
Q 048216 632 PKLECLIINPCAHLK-GFLNS 651 (654)
Q Consensus 632 p~L~~L~i~~C~~L~-~lP~~ 651 (654)
++|+.|++++| ++. .+|..
T Consensus 268 ~~L~~L~Ls~N-~l~~~ip~~ 287 (313)
T 1ogq_A 268 KFLHSLNVSFN-NLCGEIPQG 287 (313)
T ss_dssp TTCCEEECCSS-EEEEECCCS
T ss_pred cCCCEEECcCC-cccccCCCC
Confidence 99999999998 455 56653
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=4.2e-17 Score=184.89 Aligned_cols=245 Identities=12% Similarity=0.103 Sum_probs=158.1
Q ss_pred cCceeEEEEecCCCCccccccc--cCceeEEEEecCC-CCCCChhhhHhhhccc------ceeeEEecCCCCCCCCCCcC
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSG-SQYLDPTYCEKICKMF------KFLRVLNLGSLLNIPSLKSL 446 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~l------~~Lr~L~L~~~~~lp~i~~l 446 (654)
..+.++|.+..+.....++..+ +++|++|.+.++. .. ....+..+..+ ++|++|+|++| .+..+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~---~~~lp~~~~~L~~~~~l~~L~~L~L~~n----~l~~i 320 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS---GEQLKDDWQALADAPVGEKIQIIYIGYN----NLKTF 320 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC---HHHHHHHHHHHHHSGGGGTCCEEECCSS----CCSSC
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc---cccchHHHHhhhccccCCCCCEEECCCC----cCCcc
Confidence 4578899998444455577767 8999999999887 42 21345556555 89999999999 78899
Q ss_pred Ch--hHHhcCCCceEEcCCCcccc-ccChhhhccccccceeccccccccCCcccchhcCCCCC-CCeEEEeccCCcccch
Q 048216 447 PS--SLLSSLLNLYTLDMPFSYID-HTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNF-ISALHHCYCTEDILGR 522 (654)
Q Consensus 447 P~--~if~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~-L~~L~l~~~~~~~~~~ 522 (654)
|. .+ +++++|++|++++|.+. .+| .++++++|++|++++ . ....+|..+.++++ |++|++++|....+|.
T Consensus 321 p~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~---N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 321 PVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY---N-QITEIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp CCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS---S-EEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred Cchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC---C-ccccccHhhhhhcccCcEEEccCCcCcccch
Confidence 98 78 99999999999999888 899 899999999999654 2 22366777777777 8888777775554431
Q ss_pred hh---------------------hccccc-------CCCCCe-EEEEee-cCCCCCCcchhhh-cCCCCccEEEEEeecc
Q 048216 523 LL---------------------VQILIL-------SCLESL-KLANES-KMPRRSNIILAEY-QFPPSLTHLSFSNIEL 571 (654)
Q Consensus 523 ~~---------------------~l~~l~-------~~~~~L-~L~l~~-~~~~lp~~~~~~~-~lp~~L~~L~L~~~~l 571 (654)
.. ....+. ..+ +| .|++++ .+..+|. ++. .+ ++|++|+|++|.+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~-~L~~L~Ls~N~l~~lp~---~~~~~l-~~L~~L~Ls~N~l 469 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPK---ELFSTG-SPLSSINLMGNML 469 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC-CEEEEECCSSCCCSCCT---HHHHTT-CCCSEEECCSSCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC-CCCEEECcCCccCcCCH---HHHccC-CCCCEEECCCCCC
Confidence 00 001122 233 55 555554 3345555 333 35 6666666666665
Q ss_pred CCCCcccccc-------CcccceEEEeecccCCCeeEEcCC--CCccccEEEEecCCCCcceeEcCccccccceeeeec
Q 048216 572 MDDPMPALEK-------LPVLQVLKLKQNSYSGRKLACSSD--GFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINP 641 (654)
Q Consensus 572 ~~~~l~~l~~-------l~~L~~L~L~~~~~~~~~l~~~~~--~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~ 641 (654)
...+...+.. +++|+.|+|++|... .++.... .+++|+.|++++ +.+..+|...+.+++|+.|++++
T Consensus 470 ~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp SBCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCS
T ss_pred CCcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCC
Confidence 4222112221 226666666644433 3333333 567777777776 34555666666677777777744
No 16
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=1.5e-17 Score=170.99 Aligned_cols=226 Identities=18% Similarity=0.148 Sum_probs=113.7
Q ss_pred ccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC---ChhHHhcCCCceEEcCCCccccc
Q 048216 393 FLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL---PSSLLSSLLNLYTLDMPFSYIDH 469 (654)
Q Consensus 393 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l---P~~if~~L~~L~~L~L~~~~l~~ 469 (654)
++..+.++++.|.+.++... .++...|.++++|++|+|++| .+..+ |..+ ..+.+|++|++++|.+..
T Consensus 22 ip~~~~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 22 VPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSN----GLSFKGCCSQSD-FGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp CCSCCCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSS----CCCEEEEEEHHH-HSCSCCCEEECCSCSEEE
T ss_pred CCCCCCCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCC----ccCcccCccccc-ccccccCEEECCCCcccc
Confidence 33333455666666555442 133344556666666666666 45433 4454 556666666666666666
Q ss_pred cChhhhccccccceeccccccccCCcccc--hhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CC
Q 048216 470 TADEFWKVSKLRYLNFGAITLPAHPGKYC--NSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MP 545 (654)
Q Consensus 470 lP~~i~~L~~L~~L~l~~l~~l~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~ 545 (654)
+|..+..+++|++|++++ . ....++ ..+.++++|++|++++|..... ....+..++ +| .|+++++ +.
T Consensus 93 l~~~~~~l~~L~~L~l~~---n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~-~L~~L~l~~n~l~ 163 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQH---S-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLS-SLEVLKMAGNSFQ 163 (306)
T ss_dssp EEEEEETCTTCCEEECTT---S-EEESSTTTTTTTTCTTCCEEECTTSCCEEC----STTTTTTCT-TCCEEECTTCEEG
T ss_pred ChhhcCCCCCCCEEECCC---C-cccccccchhhhhccCCCEEECCCCcCCcc----chhhcccCc-CCCEEECCCCccc
Confidence 666666666666666432 1 111122 2455556666666665544332 123344444 56 6666542 22
Q ss_pred --CCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcc
Q 048216 546 --RRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEE 623 (654)
Q Consensus 546 --~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~ 623 (654)
.+|. ++..+ ++|++|+|++|.+.......+..+++|++|+|++|..... .......+++|+.|+++++ .+..
T Consensus 164 ~~~~~~---~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~ 237 (306)
T 2z66_A 164 ENFLPD---IFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLN-HIMT 237 (306)
T ss_dssp GGEECS---CCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTS-CCCB
T ss_pred cccchh---HHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCC-CCcc
Confidence 2454 55555 6666666666655444444555666666666664332211 1112234556666666653 3333
Q ss_pred e-eEcCcccc-ccceeeeecC
Q 048216 624 W-TMGIRAMP-KLECLIINPC 642 (654)
Q Consensus 624 l-~~~~~~~p-~L~~L~i~~C 642 (654)
. +.....+| +|+.|+++++
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTC
T ss_pred cCHHHHHhhhccCCEEEccCC
Confidence 2 22233443 5666666554
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=3.9e-17 Score=177.52 Aligned_cols=238 Identities=16% Similarity=0.112 Sum_probs=148.5
Q ss_pred EEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEE
Q 048216 381 RFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTL 460 (654)
Q Consensus 381 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L 460 (654)
.+... +.....+|..+.++++.|.+.++... .+.+..|.++++|++|+|++| .+..++...|+++.+|++|
T Consensus 58 ~v~c~-~~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 58 KVVCT-RRGLSEVPQGIPSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRN----SIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp EEECC-SSCCSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSS----CCCEECTTTTTTCTTCCEE
T ss_pred EEEEC-CCCcCccCCCCCCCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCC----ccCCcChhhccCcccCCEE
Confidence 34433 33333355444667777777776653 244566777777888888777 6776664444777778888
Q ss_pred cCCCccccccChh-hhccccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCC-cccchhhhcccccCCCCCe-
Q 048216 461 DMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTE-DILGRLLVQILILSCLESL- 536 (654)
Q Consensus 461 ~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~l~~~~~~L- 536 (654)
+|++|.+..+|.. +..+++|++|++++ . ....++ ..+.++++|++|+++.|.. ..+ ....+..++ +|
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~---N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i----~~~~~~~l~-~L~ 199 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRN---N-PIESIPSYAFNRVPSLMRLDLGELKKLEYI----SEGAFEGLF-NLK 199 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCS---C-CCCEECTTTTTTCTTCCEEECCCCTTCCEE----CTTTTTTCT-TCC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCC---C-CcceeCHhHHhcCCcccEEeCCCCCCcccc----ChhhccCCC-CCC
Confidence 8877777777654 66777777777543 2 222333 3566777777777776432 333 223455566 77
Q ss_pred EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEE
Q 048216 537 KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHL 615 (654)
Q Consensus 537 ~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l 615 (654)
.|++++ .+..+|. +..+ ++|+.|+|++|.+.......+.++++|+.|+|++|... .........+++|+.|++
T Consensus 200 ~L~L~~n~l~~~~~----~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 200 YLNLGMCNIKDMPN----LTPL-VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNL 273 (452)
T ss_dssp EEECTTSCCSSCCC----CTTC-TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccccccc----cccc-ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEEC
Confidence 777766 3445663 5566 77888888777766555566777778888877744332 111222345677778887
Q ss_pred ecCCCCcceeEc-CccccccceeeeecCc
Q 048216 616 KSMLWLEEWTMG-IRAMPKLECLIINPCA 643 (654)
Q Consensus 616 ~~~~~l~~l~~~-~~~~p~L~~L~i~~C~ 643 (654)
+++ ++..++.. ...+++|+.|++.++|
T Consensus 274 ~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 274 AHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCC-cCCccChHHhccccCCCEEEccCCC
Confidence 773 56665543 3457777777777654
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=5.6e-17 Score=187.86 Aligned_cols=257 Identities=13% Similarity=0.112 Sum_probs=172.5
Q ss_pred cCceeEEEEecCCCCccccccc--cCceeEEEEecCC-CCCCChhhhHhhhcccc-------eeeEEecCCCCCCCCCCc
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSG-SQYLDPTYCEKICKMFK-------FLRVLNLGSLLNIPSLKS 445 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~l~-------~Lr~L~L~~~~~lp~i~~ 445 (654)
..+.++|.+..+.....++..+ +++|+.|.+.++. .. ....|..+.+++ +|++|+|++| .+..
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls---g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N----~L~~ 562 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---AAQLKADWTRLADDEDTGPKIQIFYMGYN----NLEE 562 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC---HHHHHHHHHHHHHCTTTTTTCCEEECCSS----CCCB
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc---cccchHHHHhhhhcccccCCccEEEeeCC----cCCc
Confidence 4678999998444455677777 8999999999987 42 213445555554 9999999999 8889
Q ss_pred CCh--hHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCC-CCeEEEeccCCcccch
Q 048216 446 LPS--SLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNF-ISALHHCYCTEDILGR 522 (654)
Q Consensus 446 lP~--~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~-L~~L~l~~~~~~~~~~ 522 (654)
+|. .+ +++++|++|+|++|.+..+| .++++++|++|++++ . ....+|..+.++++ |++|++++|....+|.
T Consensus 563 ip~~~~l-~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~---N-~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 563 FPASASL-QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY---N-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636 (876)
T ss_dssp CCCHHHH-TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS---S-CCSCCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred cCChhhh-hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC---C-ccccchHHHhhccccCCEEECcCCCCCcCch
Confidence 998 88 99999999999999888999 899999999999644 3 23378888888888 9999998886655441
Q ss_pred hh-h-----c--------------cccc------CCCCCe-EEEEee-cCCCCCCcchhhh-cCCCCccEEEEEeeccCC
Q 048216 523 LL-V-----Q--------------ILIL------SCLESL-KLANES-KMPRRSNIILAEY-QFPPSLTHLSFSNIELMD 573 (654)
Q Consensus 523 ~~-~-----l--------------~~l~------~~~~~L-~L~l~~-~~~~lp~~~~~~~-~lp~~L~~L~L~~~~l~~ 573 (654)
.. . + ..+. ..+ +| .|++++ .+..+|. ++. .+ ++|+.|+|++|.+..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~-~L~~L~Ls~N~L~~lp~---~~~~~l-~~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI-NASTVTLSYNEIQKFPT---ELFATG-SPISTIILSNNLMTS 711 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC-CEEEEECCSSCCCSCCH---HHHHTT-CCCSEEECCSCCCSC
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCC-CcCEEEccCCcCCccCH---HHHccC-CCCCEEECCCCcCCc
Confidence 00 0 0 0000 122 56 666655 3345565 443 45 777777777776642
Q ss_pred CCcccc-------ccCcccceEEEeecccCCCeeEEcCC--CCccccEEEEecCCCCcceeEcCccccccceeeeecCc-
Q 048216 574 DPMPAL-------EKLPVLQVLKLKQNSYSGRKLACSSD--GFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCA- 643 (654)
Q Consensus 574 ~~l~~l-------~~l~~L~~L~L~~~~~~~~~l~~~~~--~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~- 643 (654)
.+...+ .++++|+.|+|++|... .++.... .+++|+.|++++ +.+..+|...+.+++|+.|++++|+
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBC
T ss_pred cChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCC
Confidence 222112 12347777777755443 3443333 677888888877 3566677667778888888886632
Q ss_pred -----CCcccccccC
Q 048216 644 -----HLKGFLNSFG 653 (654)
Q Consensus 644 -----~L~~lP~~l~ 653 (654)
-...+|..++
T Consensus 789 ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 789 AEGNRILRQWPTGIT 803 (876)
T ss_dssp TTCCBCCCCCCTTGG
T ss_pred cccccccccChHHHh
Confidence 2334665543
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=176.02 Aligned_cols=238 Identities=16% Similarity=0.087 Sum_probs=145.7
Q ss_pred EEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEE
Q 048216 381 RFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTL 460 (654)
Q Consensus 381 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L 460 (654)
.+... +.....+|..+.++++.|.+.++... .+.+..|.++++|++|+|++| .+..++...|.++.+|++|
T Consensus 47 ~v~c~-~~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n----~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 47 KVICV-RKNLREVPDGISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRN----HIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp EEECC-SCCCSSCCSCCCTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSS----CCCEECGGGGTTCSSCCEE
T ss_pred EEEeC-CCCcCcCCCCCCCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCC----cCCccChhhccCCccCCEE
Confidence 34433 33333455555667777777776653 234456777777777777777 6776665444777777777
Q ss_pred cCCCccccccCh-hhhccccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCC-cccchhhhcccccCCCCCe-
Q 048216 461 DMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTE-DILGRLLVQILILSCLESL- 536 (654)
Q Consensus 461 ~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~l~~~~~~L- 536 (654)
+|++|.+..+|. .+..+++|++|++++ . ....++ ..+.++++|++|+++.|.. ..+ ....+..++ +|
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~---N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i----~~~~~~~l~-~L~ 188 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRN---N-PIESIPSYAFNRIPSLRRLDLGELKRLSYI----SEGAFEGLS-NLR 188 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCS---C-CCCEECTTTTTTCTTCCEEECCCCTTCCEE----CTTTTTTCS-SCC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCC---C-cccccCHHHhhhCcccCEeCCCCCCCccee----Ccchhhccc-ccC
Confidence 777777777765 467777777777543 2 122333 3566777777777776432 222 123355556 77
Q ss_pred EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEE
Q 048216 537 KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHL 615 (654)
Q Consensus 537 ~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l 615 (654)
.|++++ .+..+|. +..+ ++|+.|+|++|.+.......+.++++|+.|+|++|... .........+++|+.|++
T Consensus 189 ~L~L~~n~l~~~~~----~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 189 YLNLAMCNLREIPN----LTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINL 262 (440)
T ss_dssp EEECTTSCCSSCCC----CTTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEEC
T ss_pred eecCCCCcCccccc----cCCC-cccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEEC
Confidence 777766 3456663 4566 77777777777765555556777777777777744322 111122345677777777
Q ss_pred ecCCCCcceeEc-CccccccceeeeecCc
Q 048216 616 KSMLWLEEWTMG-IRAMPKLECLIINPCA 643 (654)
Q Consensus 616 ~~~~~l~~l~~~-~~~~p~L~~L~i~~C~ 643 (654)
++ +++..++.. ...+++|+.|++.++|
T Consensus 263 ~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 263 AH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 76 356665543 3456777777776654
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.70 E-value=1.7e-17 Score=192.40 Aligned_cols=260 Identities=15% Similarity=0.101 Sum_probs=181.2
Q ss_pred cCceeEEEEecCCCCccccccc---cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCC-cCChhHH
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF---DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLK-SLPSSLL 451 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~-~lP~~if 451 (654)
..+.+++.+..+.....++..+ +++|+.|.+.++... ...+..|.++++|++|+|++| .+. .+|...|
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n----~l~~~ip~~~l 339 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY----GAVPPFFGSCSLLESLALSSN----NFSGELPMDTL 339 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE----ECCCGGGGGCTTCCEEECCSS----EEEEECCHHHH
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC----CccchHHhcCCCccEEECCCC----cccCcCCHHHH
Confidence 3456777776222222344444 477888877776542 234566777888888888888 555 7777633
Q ss_pred hcCCCceEEcCCCcccc-ccChhhhccc-cccceeccc-----------------------cccccCCcccchhcCCCCC
Q 048216 452 SSLLNLYTLDMPFSYID-HTADEFWKVS-KLRYLNFGA-----------------------ITLPAHPGKYCNSLENLNF 506 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~-~lP~~i~~L~-~L~~L~l~~-----------------------l~~l~~~~~l~~~l~~l~~ 506 (654)
+++++|++|++++|.+. .+|..+.++. +|++|+++. +.+......+|..++++++
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 419 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC
Confidence 78888888888888665 6777777776 777777643 1111122356777888888
Q ss_pred CCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CC-CCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCc
Q 048216 507 ISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MP-RRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLP 583 (654)
Q Consensus 507 L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~-~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~ 583 (654)
|++|++++|..... ....+..++ +| .|+++++ +. .+|. .+..+ ++|++|+|++|.+....+..+++++
T Consensus 420 L~~L~Ls~N~l~~~----~p~~l~~l~-~L~~L~L~~n~l~~~~p~---~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 420 LVSLHLSFNYLSGT----IPSSLGSLS-KLRDLKLWLNMLEGEIPQ---ELMYV-KTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CCEEECCSSEEESC----CCGGGGGCT-TCCEEECCSSCCCSCCCG---GGGGC-TTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCEEECcCCcccCc----ccHHHhcCC-CCCEEECCCCcccCcCCH---HHcCC-CCceEEEecCCcccCcCCHHHhcCC
Confidence 88888888755432 234566667 88 8888874 33 6787 78888 8999999999988766677788899
Q ss_pred ccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcccccccC
Q 048216 584 VLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSFG 653 (654)
Q Consensus 584 ~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l~ 653 (654)
+|++|+|++|... ..++...+.+++|++|+++++.-...+|...+.+++|+.|++++|+-...+|..++
T Consensus 491 ~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 491 NLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp TCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 9999999955543 34444556788999999998654446677778899999999999865556887654
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.70 E-value=3.9e-17 Score=189.38 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=52.9
Q ss_pred CCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceee
Q 048216 559 PSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLI 638 (654)
Q Consensus 559 ~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~ 638 (654)
++|+.|+|++|+++...+..++++++|+.|+|++|...+ .++...+.+++|+.|+++++.--..+|...+.+++|+.|+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 556667777766655555566667777777776444332 3444445566677777766432224555556666677777
Q ss_pred eecCcCCccccc
Q 048216 639 INPCAHLKGFLN 650 (654)
Q Consensus 639 i~~C~~L~~lP~ 650 (654)
+++|+--..+|.
T Consensus 711 ls~N~l~g~iP~ 722 (768)
T 3rgz_A 711 LSNNNLSGPIPE 722 (768)
T ss_dssp CCSSEEEEECCS
T ss_pred CcCCcccccCCC
Confidence 766532223554
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=4.8e-17 Score=169.29 Aligned_cols=241 Identities=15% Similarity=0.141 Sum_probs=157.1
Q ss_pred cCceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHh
Q 048216 376 RENVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLS 452 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~ 452 (654)
+..++.+.+. ++....+ +..+ +++|++|.+.++... ...+..|.++++|++|+|++| .+..+|..+ .
T Consensus 53 ~~~l~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n----~l~~l~~~~-~ 122 (332)
T 2ft3_A 53 SPDTTLLDLQ-NNDISELRKDDFKGLQHLYALVLVNNKIS----KIHEKAFSPLRKLQKLYISKN----HLVEIPPNL-P 122 (332)
T ss_dssp CTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCCC----EECGGGSTTCTTCCEEECCSS----CCCSCCSSC-C
T ss_pred CCCCeEEECC-CCcCCccCHhHhhCCCCCcEEECCCCccC----ccCHhHhhCcCCCCEEECCCC----cCCccCccc-c
Confidence 3466777776 4333323 3334 677777777766543 244556777777777777777 677777766 3
Q ss_pred cCCCceEEcCCCccccccChh-hhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccC
Q 048216 453 SLLNLYTLDMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILS 531 (654)
Q Consensus 453 ~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 531 (654)
.+|++|++++|.+..+|.. +.++++|++|++++ ..+......+..+..+ +|++|++++|....+| ..+
T Consensus 123 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~-----~~~-- 191 (332)
T 2ft3_A 123 --SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP-----KDL-- 191 (332)
T ss_dssp --TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC-----SSS--
T ss_pred --ccCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCCCcccccCC-ccCEEECcCCCCCccC-----ccc--
Confidence 6777777777777776653 67777777777543 1111122345556666 7777777777655553 111
Q ss_pred CCCCe-EEEEeec-CCCCC-CcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCc
Q 048216 532 CLESL-KLANESK-MPRRS-NIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFP 608 (654)
Q Consensus 532 ~~~~L-~L~l~~~-~~~lp-~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~ 608 (654)
.+ +| .|+++++ +..++ . ++..+ ++|++|+|++|.+.......+..+++|++|++++|... .++.....++
T Consensus 192 ~~-~L~~L~l~~n~i~~~~~~---~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~ 264 (332)
T 2ft3_A 192 PE-TLNELHLDHNKIQAIELE---DLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLK 264 (332)
T ss_dssp CS-SCSCCBCCSSCCCCCCTT---SSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCT
T ss_pred cC-CCCEEECCCCcCCccCHH---HhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--ecChhhhcCc
Confidence 14 78 8888763 44444 4 67778 88999999999876655557888999999999865443 4444455688
Q ss_pred cccEEEEecCCCCcceeEcC-------ccccccceeeeecCcCC
Q 048216 609 KLKVLHLKSMLWLEEWTMGI-------RAMPKLECLIINPCAHL 645 (654)
Q Consensus 609 ~L~~L~l~~~~~l~~l~~~~-------~~~p~L~~L~i~~C~~L 645 (654)
+|+.|++++ +.+..++... ..+++|+.|.+.++|-.
T Consensus 265 ~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 265 LLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCCEEECCC-CCCCccChhHccccccccccccccceEeecCccc
Confidence 899999987 4577665321 12577889999888644
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=1.1e-16 Score=170.56 Aligned_cols=233 Identities=17% Similarity=0.131 Sum_probs=173.1
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccC-hhhhc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTA-DEFWK 476 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP-~~i~~ 476 (654)
.++++.|.+.++... .+++..|.++++|++|+|++| .+..+|...|+++++|++|++++|.+..+| ..+++
T Consensus 44 l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCceEEEecCCchh----hCChhHhcccccCcEEECCCC----cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 799999999988754 356677899999999999999 888887644499999999999999998885 45899
Q ss_pred cccccceeccccccccCCcccchh-cCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCc-ch
Q 048216 477 VSKLRYLNFGAITLPAHPGKYCNS-LENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNI-IL 552 (654)
Q Consensus 477 L~~L~~L~l~~l~~l~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~-~~ 552 (654)
+++|++|++++ . ....+|.. +.++++|++|++++|....+ ....+..++ +| .|+++++ +..++.. +.
T Consensus 116 l~~L~~L~L~~---n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~ 186 (390)
T 3o6n_A 116 VPLLTVLVLER---N-DLSSLPRGIFHNTPKLTTLSMSNNNLERI----EDDTFQATT-SLQNLQLSSNRLTHVDLSLIP 186 (390)
T ss_dssp CTTCCEEECCS---S-CCCCCCTTTTTTCTTCCEEECCSSCCCBC----CTTTTSSCT-TCCEEECCSSCCSBCCGGGCT
T ss_pred CCCCCEEECCC---C-ccCcCCHHHhcCCCCCcEEECCCCccCcc----ChhhccCCC-CCCEEECCCCcCCcccccccc
Confidence 99999999654 3 34466665 58999999999999977655 234456666 88 8888763 2222210 00
Q ss_pred hh-------------------h--------------cCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCe
Q 048216 553 AE-------------------Y--------------QFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRK 599 (654)
Q Consensus 553 ~~-------------------~--------------~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~ 599 (654)
.+ . ..+++|+.|++++|.+.. .+.+..+++|++|++++|.. ...
T Consensus 187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l-~~~ 263 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL-EKI 263 (390)
T ss_dssp TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCC-CEE
T ss_pred ccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcC-CCc
Confidence 00 0 011356667777776533 36788899999999995543 222
Q ss_pred eEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCccccccc
Q 048216 600 LACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSF 652 (654)
Q Consensus 600 l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l 652 (654)
.+.....+++|++|++++ ..+..++...+.+|+|+.|++++| ++..+|..+
T Consensus 264 ~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 314 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQ 314 (390)
T ss_dssp ESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGH
T ss_pred ChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCccc
Confidence 334456789999999998 578888887788999999999998 788888754
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=171.65 Aligned_cols=247 Identities=17% Similarity=0.122 Sum_probs=162.1
Q ss_pred cCceeEEEEecCCCCccccc-cc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHh
Q 048216 376 RENVKRFTAHEKLNDFGFLD-DF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLS 452 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~ 452 (654)
+.+++++.+. ++....++. .+ +++|++|.+.++... ...+..|.++++|++|+|++| .+..+|...|+
T Consensus 51 ~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~ 121 (353)
T 2z80_A 51 TEAVKSLDLS-NNRITYISNSDLQRCVNLQALVLTSNGIN----TIEEDSFSSLGSLEHLDLSYN----YLSNLSSSWFK 121 (353)
T ss_dssp CTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSS----CCSSCCHHHHT
T ss_pred cccCcEEECC-CCcCcccCHHHhccCCCCCEEECCCCccC----ccCHhhcCCCCCCCEEECCCC----cCCcCCHhHhC
Confidence 3467788877 444433433 34 778888888777653 244556777888888888888 77778777447
Q ss_pred cCCCceEEcCCCccccccCh--hhhccccccceeccccccccCCccc-chhcCCCCCCCeEEEeccCCcccchhhhcccc
Q 048216 453 SLLNLYTLDMPFSYIDHTAD--EFWKVSKLRYLNFGAITLPAHPGKY-CNSLENLNFISALHHCYCTEDILGRLLVQILI 529 (654)
Q Consensus 453 ~L~~L~~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~l~~l~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 529 (654)
++++|++|++++|.+..+|. .+.++++|++|++++ ......+ +..+.++++|++|++++|..... ....+
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~---n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l 194 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN---MDTFTKIQRKDFAGLTFLEELEIDASDLQSY----EPKSL 194 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE---SSSCCEECTTTTTTCCEEEEEEEEETTCCEE----CTTTT
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCC---CccccccCHHHccCCCCCCEEECCCCCcCcc----CHHHH
Confidence 88888888888887777776 577788888888543 2112333 45677778888888887765544 23456
Q ss_pred cCCCCCe-EEEEeec-CCCCCCcchhh-hcCCCCccEEEEEeeccCCCCcccc---ccCcccceEEEeecccCCC---ee
Q 048216 530 LSCLESL-KLANESK-MPRRSNIILAE-YQFPPSLTHLSFSNIELMDDPMPAL---EKLPVLQVLKLKQNSYSGR---KL 600 (654)
Q Consensus 530 ~~~~~~L-~L~l~~~-~~~lp~~~~~~-~~lp~~L~~L~L~~~~l~~~~l~~l---~~l~~L~~L~L~~~~~~~~---~l 600 (654)
..++ +| .|+++++ +..+|. .+ ..+ ++|+.|++++|.+.......+ ...+.++.++++++...+. .+
T Consensus 195 ~~l~-~L~~L~l~~n~l~~~~~---~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 195 KSIQ-NVSHLILHMKQHILLLE---IFVDVT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TTCS-EEEEEEEECSCSTTHHH---HHHHHT-TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred hccc-cCCeecCCCCccccchh---hhhhhc-ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 6666 78 8888763 344554 32 246 788888888887655443322 3456677777774332221 11
Q ss_pred EEcCCCCccccEEEEecCCCCcceeEcC-ccccccceeeeecCcC
Q 048216 601 ACSSDGFPKLKVLHLKSMLWLEEWTMGI-RAMPKLECLIINPCAH 644 (654)
Q Consensus 601 ~~~~~~f~~L~~L~l~~~~~l~~l~~~~-~~~p~L~~L~i~~C~~ 644 (654)
+.....+++|+.|++++ +++..++... +.+++|+.|++++|+-
T Consensus 270 ~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 270 MKLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 11234678999999998 4678877664 6789999999998753
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=3.4e-17 Score=185.63 Aligned_cols=249 Identities=16% Similarity=0.118 Sum_probs=130.9
Q ss_pred CceeEEEEecCCCCccccc--cc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHh
Q 048216 377 ENVKRFTAHEKLNDFGFLD--DF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLS 452 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~~~--~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~ 452 (654)
.+.+++.+. ++....++. .+ +++|+.|.+.++... ..++ .+..+++|++|+|++| .+..+|..+ +
T Consensus 305 ~~L~~L~L~-~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~----g~ip-~~~~l~~L~~L~L~~N----~l~~lp~~l-~ 373 (636)
T 4eco_A 305 EKIQIIYIG-YNNLKTFPVETSLQKMKKLGMLECLYNQLE----GKLP-AFGSEIKLASLNLAYN----QITEIPANF-C 373 (636)
T ss_dssp GTCCEEECC-SSCCSSCCCHHHHTTCTTCCEEECCSCCCE----EECC-CCEEEEEESEEECCSS----EEEECCTTS-E
T ss_pred CCCCEEECC-CCcCCccCchhhhccCCCCCEEeCcCCcCc----cchh-hhCCCCCCCEEECCCC----ccccccHhh-h
Confidence 456666666 333334554 44 666777766665542 1122 5666666777777776 566666666 6
Q ss_pred cCCC-ceEEcCCCccccccChhhhccc--cccceeccccccccCCcccchhcC-------CCCCCCeEEEeccCCcccch
Q 048216 453 SLLN-LYTLDMPFSYIDHTADEFWKVS--KLRYLNFGAITLPAHPGKYCNSLE-------NLNFISALHHCYCTEDILGR 522 (654)
Q Consensus 453 ~L~~-L~~L~L~~~~l~~lP~~i~~L~--~L~~L~l~~l~~l~~~~~l~~~l~-------~l~~L~~L~l~~~~~~~~~~ 522 (654)
++++ |++|++++|.+..+|..+..+. +|++|++++ .......|..+. .+++|++|++++|....+|
T Consensus 374 ~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~---N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp- 449 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY---NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP- 449 (636)
T ss_dssp EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCS---SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC-
T ss_pred hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcC---CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC-
Confidence 7766 7777777776666666665544 666666432 222233444444 5556666666666554443
Q ss_pred hhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCC-------CccEEEEEeeccCCCCccccc--cCcccceEEEe
Q 048216 523 LLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPP-------SLTHLSFSNIELMDDPMPALE--KLPVLQVLKLK 591 (654)
Q Consensus 523 ~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~-------~L~~L~L~~~~l~~~~l~~l~--~l~~L~~L~L~ 591 (654)
...+..++ +| .|++++ .+..+|. ++..... +|++|+|++|.+. ..+..+. .+++|+.|+|+
T Consensus 450 ---~~~~~~l~-~L~~L~Ls~N~l~~i~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 450 ---KELFSTGS-PLSSINLMGNMLTEIPK---NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp ---THHHHTTC-CCSEEECCSSCCSBCCS---SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECC
T ss_pred ---HHHHccCC-CCCEEECCCCCCCCcCH---HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECC
Confidence 11122344 56 666655 3334554 3221101 5666666666654 2223333 56666666666
Q ss_pred ecccCCCeeEEcCCCCccccEEEEec------CCCCcceeEcCccccccceeeeecCcCCcccccc
Q 048216 592 QNSYSGRKLACSSDGFPKLKVLHLKS------MLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNS 651 (654)
Q Consensus 592 ~~~~~~~~l~~~~~~f~~L~~L~l~~------~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~ 651 (654)
+|...+ ++.....+++|+.|++++ +.-...+|...+.+++|+.|++++| ++..+|..
T Consensus 522 ~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~ 584 (636)
T 4eco_A 522 YNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK 584 (636)
T ss_dssp SSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred CCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh
Confidence 444332 333344455666666632 1112334444445556666666555 34555554
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.2e-16 Score=185.01 Aligned_cols=250 Identities=13% Similarity=0.148 Sum_probs=142.4
Q ss_pred cCceeEEEEecCC-CCc-cccccc--c-------CceeEEEEecCCCCCCChhhhHh--hhcccceeeEEecCCCCCCCC
Q 048216 376 RENVKRFTAHEKL-NDF-GFLDDF--D-------SFLHSLLYLTSGSQYLDPTYCEK--ICKMFKFLRVLNLGSLLNIPS 442 (654)
Q Consensus 376 ~~~~r~lsl~~~~-~~~-~~~~~~--~-------~~Lr~L~l~~~~~~~~~~~~~~~--~~~~l~~Lr~L~L~~~~~lp~ 442 (654)
..+.+.|.+..+. ... .+|..+ + ++|+.|.+.++... .++. .+.++++|+.|+|++| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----~ip~~~~l~~L~~L~~L~Ls~N----~ 584 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----EFPASASLQKMVKLGLLDCVHN----K 584 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----BCCCHHHHTTCTTCCEEECTTS----C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----ccCChhhhhcCCCCCEEECCCC----C
Confidence 3466777776332 222 244333 2 37777777776653 2333 5677777777777777 5
Q ss_pred CCcCChhHHhcCCCceEEcCCCccccccChhhhcccc-ccceeccccccccCCcccchhcCC------------------
Q 048216 443 LKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSK-LRYLNFGAITLPAHPGKYCNSLEN------------------ 503 (654)
Q Consensus 443 i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~-L~~L~l~~l~~l~~~~~l~~~l~~------------------ 503 (654)
+..+| .+ +++++|++|+|++|.+..+|..+.++++ |++|++++ . ....+|..+..
T Consensus 585 l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~---N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 585 VRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH---N-KLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS---S-CCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcC---C-CCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 66666 55 6777777777777766667766767766 77776543 1 11122222222
Q ss_pred -------------CCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCC-------CCc
Q 048216 504 -------------LNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFP-------PSL 561 (654)
Q Consensus 504 -------------l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp-------~~L 561 (654)
+++|+.|++++|....+| ...+..++ +| .|++++ .+..+|. ++.... ++|
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp----~~~~~~l~-~L~~L~Ls~N~L~~ip~---~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFP----TELFATGS-PISTIILSNNLMTSIPE---NSLKPKDGNYKNTYLL 730 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCC----HHHHHTTC-CCSEEECCSCCCSCCCT---TSSSCTTSCCTTGGGC
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccC----HHHHccCC-CCCEEECCCCcCCccCh---HHhccccccccccCCc
Confidence 225555555555444332 11122445 77 777776 3456666 443321 277
Q ss_pred cEEEEEeeccCCCCccccc--cCcccceEEEeecccCCCeeEEcCCCCccccEEEEecC------CCCcceeEcCccccc
Q 048216 562 THLSFSNIELMDDPMPALE--KLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSM------LWLEEWTMGIRAMPK 633 (654)
Q Consensus 562 ~~L~L~~~~l~~~~l~~l~--~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~------~~l~~l~~~~~~~p~ 633 (654)
+.|+|++|++. ..+..+. .+++|+.|+|++|...+ ++.....+++|+.|+++++ .-...+|...+.+++
T Consensus 731 ~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 77777777765 3333444 67777777777555443 4444556777777777652 223344545556777
Q ss_pred cceeeeecCcCCccccccc
Q 048216 634 LECLIINPCAHLKGFLNSF 652 (654)
Q Consensus 634 L~~L~i~~C~~L~~lP~~l 652 (654)
|+.|++++| ++..+|..+
T Consensus 808 L~~L~Ls~N-~L~~Ip~~l 825 (876)
T 4ecn_A 808 LIQLQIGSN-DIRKVDEKL 825 (876)
T ss_dssp CCEEECCSS-CCCBCCSCC
T ss_pred CCEEECCCC-CCCccCHhh
Confidence 777777776 446677654
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=2.9e-16 Score=177.14 Aligned_cols=130 Identities=18% Similarity=0.052 Sum_probs=81.7
Q ss_pred ccCceeEEEEecCCCCcccc-ccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC-ChhH
Q 048216 375 LRENVKRFTAHEKLNDFGFL-DDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL-PSSL 450 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~i 450 (654)
.+.+++++.+. ++....++ ..+ +++|++|.+.++... .+.+..|.++++|++|+|++| .+..+ |..+
T Consensus 30 ~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~n----~l~~~~p~~~ 100 (606)
T 3vq2_A 30 IPSSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTGN----PIQSFSPGSF 100 (606)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTC----CCCCCCTTSS
T ss_pred CCCCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCCccc----ccCHHHhhchhhcCEeECCCC----cccccChhhc
Confidence 34667778777 44333333 244 777888877777653 244556777777777777777 66666 4455
Q ss_pred HhcCCCceEEcCCCccccccC-hhhhccccccceeccccccccCC-cccchhcCCCCCCCeEEEeccCC
Q 048216 451 LSSLLNLYTLDMPFSYIDHTA-DEFWKVSKLRYLNFGAITLPAHP-GKYCNSLENLNFISALHHCYCTE 517 (654)
Q Consensus 451 f~~L~~L~~L~L~~~~l~~lP-~~i~~L~~L~~L~l~~l~~l~~~-~~l~~~l~~l~~L~~L~l~~~~~ 517 (654)
+++++|++|++++|.+..+| ..++++++|++|++++ .... ..+|..++++++|++|++++|..
T Consensus 101 -~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~---n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 101 -SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH---NFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp -TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS---SCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred -CCcccCCEEEccCCccccccccccCCCCCCCEEeCCC---CcccceechHhHhhcCCCCEEEccCCcc
Confidence 77777777777777666665 5567777777777533 2111 13566666666677666666643
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=7.8e-17 Score=179.54 Aligned_cols=133 Identities=17% Similarity=0.085 Sum_probs=101.8
Q ss_pred cCceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhc
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSS 453 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~ 453 (654)
+..++++.+..+......+..+ +++|++|.+.++... ...+..|.++++|++|+|++| .+..+|...|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~ 96 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDN----HLSSLSSSWFGP 96 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTS----CCCSCCHHHHTT
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCCC----ccCccCHHHhcc
Confidence 4678999998333333334455 899999999988764 355677899999999999999 888888874499
Q ss_pred CCCceEEcCCCccccc--cChhhhccccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCCcc
Q 048216 454 LLNLYTLDMPFSYIDH--TADEFWKVSKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTEDI 519 (654)
Q Consensus 454 L~~L~~L~L~~~~l~~--lP~~i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~ 519 (654)
+++|++|++++|.+.. .|..++++++|++|++++ ......+| ..+.++++|++|++++|....
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~---n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN---VETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE---SSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCC---CccccccCHhhhhcccccCeeeccCCcccc
Confidence 9999999999998875 467899999999999644 32234454 467788888888888775543
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=1.2e-16 Score=180.28 Aligned_cols=252 Identities=15% Similarity=0.022 Sum_probs=138.1
Q ss_pred ccCceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC-ChhH
Q 048216 375 LRENVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL-PSSL 450 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~i 450 (654)
.+..++++.+. ++....+ +..+ +++|++|.+.++... ...+..|.++++|++|+|++| .+..+ |..+
T Consensus 31 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~ 101 (606)
T 3t6q_A 31 LPNSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQIY----WIHEDTFQSQHRLDTLVLTAN----PLIFMAETAL 101 (606)
T ss_dssp SCTTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTC----CCSEECTTTT
T ss_pred CCCcCcEEEcc-CCccCcCChhHhccCccceEEECCCCccc----eeChhhccCccccCeeeCCCC----cccccChhhh
Confidence 45567888887 4433333 4445 778888888777653 244566777777777787777 55544 3344
Q ss_pred HhcCCCceEEcCCCcccccc-Chhhhccccccceeccc--c-----------cccc-------CCcc-cchhcCCCCCCC
Q 048216 451 LSSLLNLYTLDMPFSYIDHT-ADEFWKVSKLRYLNFGA--I-----------TLPA-------HPGK-YCNSLENLNFIS 508 (654)
Q Consensus 451 f~~L~~L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~--l-----------~~l~-------~~~~-l~~~l~~l~~L~ 508 (654)
+++++|++|++++|.+..+ |..++++++|++|++++ + ++++ .... .+..++.+++|+
T Consensus 102 -~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 102 -SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp -SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred -cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 6777777777777766665 45566666666666543 0 0111 1111 133444555555
Q ss_pred --eEEEeccCCcccchh------------------------------------------------h--------------
Q 048216 509 --ALHHCYCTEDILGRL------------------------------------------------L-------------- 524 (654)
Q Consensus 509 --~L~l~~~~~~~~~~~------------------------------------------------~-------------- 524 (654)
+|++++|.....+.. .
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 444444422111100 0
Q ss_pred ---------hcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeec
Q 048216 525 ---------VQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQN 593 (654)
Q Consensus 525 ---------~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~ 593 (654)
....+..++ +| .|++++ .+..+|. ++..+ ++|++|++++|.+.......+..+++|++|++++|
T Consensus 261 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~lp~---~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFS-GLQELDLTATHLSELPS---GLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp CTTCCCSSCCTTTTTTCT-TCSEEECTTSCCSCCCS---SCCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eecCccCccCHHHhcccc-CCCEEeccCCccCCCCh---hhccc-ccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 001133445 67 777766 3456777 66677 77777777777765444445666777777777744
Q ss_pred ccCCCeeEEcCCCCccccEEEEecCCCCccee---EcCccccccceeeeecC
Q 048216 594 SYSGRKLACSSDGFPKLKVLHLKSMLWLEEWT---MGIRAMPKLECLIINPC 642 (654)
Q Consensus 594 ~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~---~~~~~~p~L~~L~i~~C 642 (654)
...+.........+++|++|+++++ .+..+. ...+.+++|+.|++++|
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred CcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCC
Confidence 3322111112344566666666653 333332 22344555555555554
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=2e-16 Score=178.13 Aligned_cols=231 Identities=16% Similarity=0.128 Sum_probs=174.4
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChh-hhc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADE-FWK 476 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~-i~~ 476 (654)
.++++.|.+.++... .+++..|.++++|++|+|++| .+..+|...|+.+++|++|+|++|.+..+|.. +++
T Consensus 50 l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCC----CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 789999999887654 366677899999999999999 88888764449999999999999999888764 699
Q ss_pred cccccceeccccccccCCcccchh-cCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchh
Q 048216 477 VSKLRYLNFGAITLPAHPGKYCNS-LENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILA 553 (654)
Q Consensus 477 L~~L~~L~l~~l~~l~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~ 553 (654)
+++|++|++++ . ....+|.. ++++++|++|++++|....+ ....+..++ +| .|+++++ +..+|.. .
T Consensus 122 l~~L~~L~L~~---n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~-~L~~L~L~~N~l~~~~~~--~ 190 (597)
T 3oja_B 122 VPLLTVLVLER---N-DLSSLPRGIFHNTPKLTTLSMSNNNLERI----EDDTFQATT-SLQNLQLSSNRLTHVDLS--L 190 (597)
T ss_dssp CTTCCEEECCS---S-CCCCCCTTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCT-TCCEEECTTSCCSBCCGG--G
T ss_pred CCCCCEEEeeC---C-CCCCCCHHHhccCCCCCEEEeeCCcCCCC----ChhhhhcCC-cCcEEECcCCCCCCcChh--h
Confidence 99999999654 3 34456665 58999999999999977665 234566666 88 8888763 2222210 0
Q ss_pred h------------------------------------hcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCC
Q 048216 554 E------------------------------------YQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSG 597 (654)
Q Consensus 554 ~------------------------------------~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~ 597 (654)
+ ...+++|+.|+|++|.+.. ++.++.+++|+.|+|++|...
T Consensus 191 l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~- 267 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE- 267 (597)
T ss_dssp CTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-
T ss_pred hhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC-
Confidence 0 0112456667777776533 467889999999999955442
Q ss_pred CeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCccccccc
Q 048216 598 RKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSF 652 (654)
Q Consensus 598 ~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l 652 (654)
...+.....+++|+.|++++ +.+..++...+.+|+|+.|++++| .+..+|..+
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~ 320 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQ 320 (597)
T ss_dssp EEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGH
T ss_pred CCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-CCCccCccc
Confidence 23344556789999999998 578888888888999999999998 777888764
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=1e-15 Score=160.06 Aligned_cols=194 Identities=19% Similarity=0.263 Sum_probs=115.5
Q ss_pred hcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcC
Q 048216 423 CKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLE 502 (654)
Q Consensus 423 ~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~ 502 (654)
+.++++|++|++++| .+..+|. + ..+++|++|++++|.....+..+.++++|++|++++ . ....++. +.
T Consensus 106 ~~~l~~L~~L~l~~n----~i~~~~~-~-~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~---~-~~~~~~~-~~ 174 (347)
T 4fmz_A 106 LQNLTNLRELYLNED----NISDISP-L-ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE---S-KVKDVTP-IA 174 (347)
T ss_dssp GTTCTTCSEEECTTS----CCCCCGG-G-TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS---S-CCCCCGG-GG
T ss_pred HcCCCcCCEEECcCC----cccCchh-h-ccCCceeEEECCCCCCcccccchhhCCCCcEEEecC---C-CcCCchh-hc
Confidence 444455555555554 4444443 3 455555555555552222222345555555555322 1 1122222 55
Q ss_pred CCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccc
Q 048216 503 NLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALE 580 (654)
Q Consensus 503 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~ 580 (654)
.+++|++|++++|....++ .+..++ +| .|.++++ +..++ .+..+ ++|++|++++|.+.. .+.+.
T Consensus 175 ~l~~L~~L~l~~n~l~~~~------~~~~l~-~L~~L~l~~n~l~~~~----~~~~~-~~L~~L~l~~n~l~~--~~~~~ 240 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDIS------PLASLT-SLHYFTAYVNQITDIT----PVANM-TRLNSLKIGNNKITD--LSPLA 240 (347)
T ss_dssp GCTTCSEEECTTSCCCCCG------GGGGCT-TCCEEECCSSCCCCCG----GGGGC-TTCCEEECCSSCCCC--CGGGT
T ss_pred cCCCCCEEEccCCcccccc------cccCCC-ccceeecccCCCCCCc----hhhcC-CcCCEEEccCCccCC--Ccchh
Confidence 6667777777666554443 244455 77 7777663 33333 35567 899999999998643 33488
Q ss_pred cCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcc
Q 048216 581 KLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKG 647 (654)
Q Consensus 581 ~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~ 647 (654)
.+++|++|++++|.... + .....+++|++|+++++ .+..++ ....+++|+.|++++| .+..
T Consensus 241 ~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n-~l~~ 301 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN-QLGN 301 (347)
T ss_dssp TCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCG
T ss_pred cCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCC-cCCC
Confidence 89999999999655433 2 23567889999999985 577663 3567899999999998 4544
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=2.6e-16 Score=163.67 Aligned_cols=243 Identities=14% Similarity=0.068 Sum_probs=158.7
Q ss_pred eeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC-ChhHHhcCCCc
Q 048216 379 VKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL-PSSLLSSLLNL 457 (654)
Q Consensus 379 ~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~if~~L~~L 457 (654)
.+.+.+. +.....++..+.++++.|.+.++... ...+..|.++++|++|+|++| .+..+ |..+ +++++|
T Consensus 35 l~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~-~~l~~L 104 (332)
T 2ft3_A 35 LRVVQCS-DLGLKAVPKEISPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNN----KISKIHEKAF-SPLRKL 104 (332)
T ss_dssp TTEEECC-SSCCSSCCSCCCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSS----CCCEECGGGS-TTCTTC
T ss_pred CCEEECC-CCCccccCCCCCCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCC----ccCccCHhHh-hCcCCC
Confidence 4555555 44444455555677888888777653 244556788888888888888 67766 4455 888888
Q ss_pred eEEcCCCccccccChhhhccccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe
Q 048216 458 YTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL 536 (654)
Q Consensus 458 ~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L 536 (654)
++|++++|.+..+|..+. ++|++|++++ . ....++ ..+.++++|++|++++|.....+ .....+..+ +|
T Consensus 105 ~~L~L~~n~l~~l~~~~~--~~L~~L~l~~---n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l--~L 174 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLP--SSLVELRIHD---N-RIRKVPKGVFSGLRNMNCIEMGGNPLENSG--FEPGAFDGL--KL 174 (332)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCCEEECCS---S-CCCCCCSGGGSSCSSCCEEECCSCCCBGGG--SCTTSSCSC--CC
T ss_pred CEEECCCCcCCccCcccc--ccCCEEECCC---C-ccCccCHhHhCCCccCCEEECCCCccccCC--CCcccccCC--cc
Confidence 888888888888887765 6788888543 2 222333 34777888888888877554321 011222222 56
Q ss_pred -EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEE
Q 048216 537 -KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLH 614 (654)
Q Consensus 537 -~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~ 614 (654)
.|++++ .+..+|. .+ . ++|++|++++|.+.......+..+++|+.|+|++|..... .......+++|++|+
T Consensus 175 ~~L~l~~n~l~~l~~---~~--~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 175 NYLRISEAKLTGIPK---DL--P-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRELH 247 (332)
T ss_dssp SCCBCCSSBCSSCCS---SS--C-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTTGGGGCTTCCEEE
T ss_pred CEEECcCCCCCccCc---cc--c-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-ChhHhhCCCCCCEEE
Confidence 777765 4556665 32 2 7788888888877666666777888888888885543321 111234577888888
Q ss_pred EecCCCCcceeEcCccccccceeeeecCcCCccccc
Q 048216 615 LKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLN 650 (654)
Q Consensus 615 l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~ 650 (654)
+++ ..+..+|...+.+++|+.|++++| +++.+|.
T Consensus 248 L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~ 281 (332)
T 2ft3_A 248 LDN-NKLSRVPAGLPDLKLLQVVYLHTN-NITKVGV 281 (332)
T ss_dssp CCS-SCCCBCCTTGGGCTTCCEEECCSS-CCCBCCT
T ss_pred CCC-CcCeecChhhhcCccCCEEECCCC-CCCccCh
Confidence 887 357777766677888888888875 5666654
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.66 E-value=4.3e-16 Score=174.17 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=78.6
Q ss_pred ccCceeEEEEecCCCCcccc-ccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHH
Q 048216 375 LRENVKRFTAHEKLNDFGFL-DDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLL 451 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if 451 (654)
.+.+++++.+. ++....++ ..+ +++|++|.+.++... ...+..|.++++|++|+|++| .+..+|..
T Consensus 50 ~~~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N----~l~~lp~~-- 118 (562)
T 3a79_B 50 LPPRTKALSLS-QNSISELRMPDISFLSELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSHN----RLQNISCC-- 118 (562)
T ss_dssp SCTTCCEEECC-SSCCCCCCGGGTTTCTTCCEEECCSCCCC----EECTTTTTTCTTCCEEECTTS----CCCEECSC--
T ss_pred CCCCcCEEECC-CCCccccChhhhccCCCccEEECCCCCCC----cCCHHHhCCCCCCCEEECCCC----cCCccCcc--
Confidence 34678999998 44444343 455 889999999988764 355677889999999999999 78888864
Q ss_pred hcCCCceEEcCCCccccccC--hhhhccccccceeccc
Q 048216 452 SSLLNLYTLDMPFSYIDHTA--DEFWKVSKLRYLNFGA 487 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP--~~i~~L~~L~~L~l~~ 487 (654)
.+++|++|++++|.+..+| ..++++++|++|++++
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCC
Confidence 7888888888888887754 6888888888888764
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.66 E-value=1.2e-15 Score=166.31 Aligned_cols=244 Identities=18% Similarity=0.159 Sum_probs=123.4
Q ss_pred CceeEEEEecCCCCccccccc-cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCC
Q 048216 377 ENVKRFTAHEKLNDFGFLDDF-DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLL 455 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~ 455 (654)
..++.+.+. +.....++.-. +++|++|.+.++.... . ++ +.++++|++|++++| .+..+|. + ++++
T Consensus 46 ~~l~~L~l~-~~~i~~l~~~~~l~~L~~L~Ls~n~l~~----~-~~-~~~l~~L~~L~l~~n----~l~~~~~-~-~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQAD-RLGIKSIDGVEYLNNLTQINFSNNQLTD----I-TP-LKNLTKLVDILMNNN----QIADITP-L-ANLT 112 (466)
T ss_dssp HTCCEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCCC----C-GG-GTTCTTCCEEECCSS----CCCCCGG-G-TTCT
T ss_pred ccccEEecC-CCCCccCcchhhhcCCCEEECCCCccCC----c-hh-hhccccCCEEECCCC----ccccChh-h-cCCC
Confidence 455666665 33333333212 6666666666655431 1 12 566666666666666 5555555 4 6666
Q ss_pred CceEEcCCCccccccChhhhccccccceeccc--c---------cccc------CCcccchhcCCCCCCCeEEEeccCCc
Q 048216 456 NLYTLDMPFSYIDHTADEFWKVSKLRYLNFGA--I---------TLPA------HPGKYCNSLENLNFISALHHCYCTED 518 (654)
Q Consensus 456 ~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~--l---------~~l~------~~~~l~~~l~~l~~L~~L~l~~~~~~ 518 (654)
+|++|++++|.+..+|. +.++++|++|++++ + ++++ ....+ ..+.++++|++|++++|...
T Consensus 113 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCc-hhhccCCCCCEEECcCCcCC
Confidence 66666666666666554 56666666666543 0 0000 11111 12555566666666655433
Q ss_pred ccchh----------------hhcccccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccc
Q 048216 519 ILGRL----------------LVQILILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALE 580 (654)
Q Consensus 519 ~~~~~----------------~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~ 580 (654)
.++.. .....+..++ +| .|+++++ +..++ .+..+ ++|++|++++|.+.. .+.+.
T Consensus 191 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~~----~l~~l-~~L~~L~l~~n~l~~--~~~~~ 262 (466)
T 1o6v_A 191 DISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLNGNQLKDIG----TLASL-TNLTDLDLANNQISN--LAPLS 262 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGGGGGCT-TCCEEECCSSCCCCCG----GGGGC-TTCSEEECCSSCCCC--CGGGT
T ss_pred CChhhccCCCCCEEEecCCcccccccccccC-CCCEEECCCCCcccch----hhhcC-CCCCEEECCCCcccc--chhhh
Confidence 33200 0000122233 44 4444442 22232 34445 556666666655422 22355
Q ss_pred cCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcccc
Q 048216 581 KLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFL 649 (654)
Q Consensus 581 ~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP 649 (654)
.+++|+.|++++|...... ....+++|+.|+++++ .+..++. .+.+++|+.|++++| ++..++
T Consensus 263 ~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~ 325 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNIS---PLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDIS 325 (466)
T ss_dssp TCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCG
T ss_pred cCCCCCEEECCCCccCccc---cccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCch
Confidence 5666666666644332211 1345677777777763 4555433 456788888888877 455544
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=4e-16 Score=175.98 Aligned_cols=244 Identities=18% Similarity=0.128 Sum_probs=113.4
Q ss_pred ceeEEEEecCCCCcccccc-c--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCCh-hHHhc
Q 048216 378 NVKRFTAHEKLNDFGFLDD-F--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPS-SLLSS 453 (654)
Q Consensus 378 ~~r~lsl~~~~~~~~~~~~-~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~-~if~~ 453 (654)
.++.+.+. ++....++.. + +++|+.|.+.++... .++..+.++++|++|++++| .+..++. .+ ++
T Consensus 255 ~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n----~l~~~~~~~~-~~ 323 (606)
T 3t6q_A 255 SVESINLQ-KHYFFNISSNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSAN----KFENLCQISA-SN 323 (606)
T ss_dssp EEEEEECT-TCCCSSCCTTTTTTCTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTC----CCSBGGGGCG-GG
T ss_pred ceeEEEee-cCccCccCHHHhccccCCCEEeccCCccC-----CCChhhcccccCCEEECccC----CcCcCchhhh-hc
Confidence 45555555 3322222222 3 556666666655443 12334555666666666666 4554432 33 56
Q ss_pred CCCceEEcCCCcccc-ccChh-hhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccC
Q 048216 454 LLNLYTLDMPFSYID-HTADE-FWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILS 531 (654)
Q Consensus 454 L~~L~~L~L~~~~l~-~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 531 (654)
+++|++|++++|.+. .+|.. +.++++|++|++++ ..+......+..+.++++|++|++++|..... ....+..
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~ 398 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL----KTEAFKE 398 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCEEE----CTTTTTT
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCCcC----CHHHhcC
Confidence 666666666665433 44433 55566666665432 01101111134455556666666655544333 2233444
Q ss_pred CCCCe-EEEEeecC-C-CCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeE--EcCCC
Q 048216 532 CLESL-KLANESKM-P-RRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLA--CSSDG 606 (654)
Q Consensus 532 ~~~~L-~L~l~~~~-~-~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~--~~~~~ 606 (654)
++ +| .|+++++. . ..|.. ++..+ ++|++|++++|.+.......++.+++|++|++++|...+..+. .....
T Consensus 399 l~-~L~~L~l~~n~l~~~~~~~--~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 399 CP-QLELLDLAFTRLKVKDAQS--PFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp CT-TCSEEECTTCCEECCTTCC--TTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred Cc-cCCeEECCCCcCCCcccch--hhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence 44 55 55555421 1 11210 34445 5555555555555444444455555555555554433221111 11233
Q ss_pred CccccEEEEecCCCCcce-eEcCccccccceeeeecC
Q 048216 607 FPKLKVLHLKSMLWLEEW-TMGIRAMPKLECLIINPC 642 (654)
Q Consensus 607 f~~L~~L~l~~~~~l~~l-~~~~~~~p~L~~L~i~~C 642 (654)
+++|++|+++++ .+..+ +...+.+++|+.|++++|
T Consensus 475 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 475 LGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCccEEECCCC-ccCccChhhhccccCCCEEECCCC
Confidence 455555555553 23333 223344555555555554
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.66 E-value=5e-16 Score=161.40 Aligned_cols=247 Identities=16% Similarity=0.108 Sum_probs=184.0
Q ss_pred ceeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC-ChhHHhcCCC
Q 048216 378 NVKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL-PSSLLSSLLN 456 (654)
Q Consensus 378 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~if~~L~~ 456 (654)
..+.+.+. +.....++..+.++++.|.+.++... .+.+..|.++++|++|+|++| .+..+ |..+ +++++
T Consensus 32 ~l~~l~~~-~~~l~~lp~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~-~~l~~ 101 (330)
T 1xku_A 32 HLRVVQCS-DLGLEKVPKDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINN----KISKISPGAF-APLVK 101 (330)
T ss_dssp ETTEEECT-TSCCCSCCCSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSS----CCCCBCTTTT-TTCTT
T ss_pred CCeEEEec-CCCccccCccCCCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCC----cCCeeCHHHh-cCCCC
Confidence 34556555 44444456555788999999888764 244557899999999999999 78877 6666 99999
Q ss_pred ceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe
Q 048216 457 LYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL 536 (654)
Q Consensus 457 L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L 536 (654)
|++|++++|.+..+|..+. ++|++|++++ .......+..+.++++|++|++++|.....+ .....+..++ +|
T Consensus 102 L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~---n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~-~L 173 (330)
T 1xku_A 102 LERLYLSKNQLKELPEKMP--KTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSG--IENGAFQGMK-KL 173 (330)
T ss_dssp CCEEECCSSCCSBCCSSCC--TTCCEEECCS---SCCCBBCHHHHTTCTTCCEEECCSSCCCGGG--BCTTGGGGCT-TC
T ss_pred CCEEECCCCcCCccChhhc--ccccEEECCC---CcccccCHhHhcCCccccEEECCCCcCCccC--cChhhccCCC-Cc
Confidence 9999999999999998776 7899999643 3222333456889999999999988654321 0234566677 99
Q ss_pred -EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEE
Q 048216 537 -KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLH 614 (654)
Q Consensus 537 -~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~ 614 (654)
.|.+++ .+..+|. .+ . ++|++|++++|.+.......+..+++|++|++++|.... ........+++|++|+
T Consensus 174 ~~L~l~~n~l~~l~~---~~--~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 174 SYIRIADTNITTIPQ---GL--P-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELH 246 (330)
T ss_dssp CEEECCSSCCCSCCS---SC--C-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEE
T ss_pred CEEECCCCccccCCc---cc--c-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCCCCCEEE
Confidence 999987 4567776 33 3 899999999998866666778899999999999654322 1111234678999999
Q ss_pred EecCCCCcceeEcCccccccceeeeecCcCCcccccc
Q 048216 615 LKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNS 651 (654)
Q Consensus 615 l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~ 651 (654)
++++ .+..+|.....+++|+.|++++| +++.+|..
T Consensus 247 L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~ 281 (330)
T 1xku_A 247 LNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN 281 (330)
T ss_dssp CCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred CCCC-cCccCChhhccCCCcCEEECCCC-cCCccChh
Confidence 9984 67888777788999999999987 67777653
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=1.3e-15 Score=170.18 Aligned_cols=124 Identities=16% Similarity=0.098 Sum_probs=99.8
Q ss_pred eeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCce
Q 048216 379 VKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLY 458 (654)
Q Consensus 379 ~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~ 458 (654)
.+++.+. +.....+|..+.++++.|.+.++... ...+..|.++++|++|+|++| .+..++...|+++++|+
T Consensus 33 ~~~l~ls-~~~L~~ip~~~~~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 33 ESMVDYS-NRNLTHVPKDLPPRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHN----RIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp CCEEECT-TSCCCSCCTTSCTTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSC----CCCEECTTTTTTCTTCC
T ss_pred CcEEEcC-CCCCccCCCCCCCCcCEEECCCCCcc----ccChhhhccCCCccEEECCCC----CCCcCCHHHhCCCCCCC
Confidence 3778887 55555566666899999999998875 355678999999999999999 88888544449999999
Q ss_pred EEcCCCccccccChhhhccccccceeccccccccCCc--ccchhcCCCCCCCeEEEeccCC
Q 048216 459 TLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPG--KYCNSLENLNFISALHHCYCTE 517 (654)
Q Consensus 459 ~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~--~l~~~l~~l~~L~~L~l~~~~~ 517 (654)
+|++++|.+..+|.. .+++|++|++++ . ... ..|..++++++|++|++++|..
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~---N-~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSF---N-DFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCS---S-CCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCC---C-CccccCchHhhcccCcccEEecCCCcc
Confidence 999999999999988 899999999754 2 222 2457888899999999988754
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=2.6e-16 Score=159.95 Aligned_cols=205 Identities=15% Similarity=0.056 Sum_probs=126.1
Q ss_pred ccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC-ChhHHhcCCCceEEcCCCcc-cccc
Q 048216 393 FLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL-PSSLLSSLLNLYTLDMPFSY-IDHT 470 (654)
Q Consensus 393 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~if~~L~~L~~L~L~~~~-l~~l 470 (654)
++..+.++++.|.+.++... .+.+..|..+++|++|+|++| .+..+ |..+ +++++|++|++++|. +..+
T Consensus 26 ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n----~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 26 VPVGIPAASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSN----VLARIDAAAF-TGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp CCTTCCTTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSS----CCCEECTTTT-TTCTTCCEEECCSCTTCCCC
T ss_pred CCcCCCCCceEEEeeCCcCC----ccCHHHcccCCCCCEEECCCC----ccceeCHhhc-CCccCCCEEeCCCCCCcccc
Confidence 44444667777777766653 234455677777777777777 66666 4444 777777777777774 6666
Q ss_pred -ChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCC
Q 048216 471 -ADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRR 547 (654)
Q Consensus 471 -P~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~l 547 (654)
|..+.++++|++|++++ .......+..+.++++|++|++++|....++ ...+..++ +| .|+++++ +..+
T Consensus 97 ~~~~~~~l~~L~~L~l~~---n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~-~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDR---CGLQELGPGLFRGLAALQYLYLQDNALQALP----DDTFRDLG-NLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTTTTTCTTCCEEECTT---SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCT-TCCEEECCSSCCCEE
T ss_pred CHHHhcCCcCCCEEECCC---CcCCEECHhHhhCCcCCCEEECCCCcccccC----HhHhccCC-CccEEECCCCccccc
Confidence 55677777777777533 2222233556677777777777777555442 23345555 77 7777663 4444
Q ss_pred CCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecC
Q 048216 548 SNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSM 618 (654)
Q Consensus 548 p~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~ 618 (654)
|.. ++..+ ++|++|+|++|.+....+..+.++++|+.|++++|..... .......+++|+.|+++++
T Consensus 169 ~~~--~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 169 PER--AFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CTT--TTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSS
T ss_pred CHH--HhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC-CHHHcccCcccCEEeccCC
Confidence 431 35566 7777777777776555555667777777777775443321 1112345677777777764
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=167.86 Aligned_cols=124 Identities=20% Similarity=0.209 Sum_probs=82.8
Q ss_pred cCceeEEEEecCCCCcccc-ccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHh
Q 048216 376 RENVKRFTAHEKLNDFGFL-DDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLS 452 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~ 452 (654)
+.+++++.+. ++.....+ ..+ +++|++|.+.++... ...+..|.++++|++|+|++| .+..+|..
T Consensus 20 ~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N----~l~~lp~~--- 87 (520)
T 2z7x_B 20 SQKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQ----YLDISVFKFNQELEYLDLSHN----KLVKISCH--- 87 (520)
T ss_dssp CTTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSCCC----EEEGGGGTTCTTCCEEECCSS----CCCEEECC---
T ss_pred cccccEEECC-CCcccccChhhccccccccEEecCCCccC----CcChHHhhcccCCCEEecCCC----ceeecCcc---
Confidence 3567788877 44333333 344 778888888777653 244567778888888888888 77777754
Q ss_pred cCCCceEEcCCCccccc--cChhhhccccccceeccccccccCCcccchhcCCCCCC--CeEEEeccCC
Q 048216 453 SLLNLYTLDMPFSYIDH--TADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFI--SALHHCYCTE 517 (654)
Q Consensus 453 ~L~~L~~L~L~~~~l~~--lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L--~~L~l~~~~~ 517 (654)
.+++|++|++++|.+.. +|..++++++|++|++++ ..+ .. ..+..+++| +.|++++|..
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l---~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST-THL---EK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE-SSC---CG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecC-ccc---ch--hhccccccceeeEEEeecccc
Confidence 67888888888887765 567788888888888644 111 11 345566666 8888887754
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.64 E-value=3e-15 Score=156.52 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=168.2
Q ss_pred cCceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhc
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSS 453 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~ 453 (654)
..+.+++.+. ++....++ .+ +++|++|.+.++.... . +. +..+++|++|++++|. .+..+ ..+ +.
T Consensus 87 l~~L~~L~L~-~n~i~~~~-~~~~l~~L~~L~l~~n~i~~----~-~~-~~~l~~L~~L~l~~n~---~~~~~-~~~-~~ 153 (347)
T 4fmz_A 87 LVKLTNLYIG-TNKITDIS-ALQNLTNLRELYLNEDNISD----I-SP-LANLTKMYSLNLGANH---NLSDL-SPL-SN 153 (347)
T ss_dssp CTTCCEEECC-SSCCCCCG-GGTTCTTCSEEECTTSCCCC----C-GG-GTTCTTCCEEECTTCT---TCCCC-GGG-TT
T ss_pred CCcCCEEEcc-CCcccCch-HHcCCCcCCEEECcCCcccC----c-hh-hccCCceeEEECCCCC---Ccccc-cch-hh
Confidence 3567777777 44433333 33 7788888887776542 1 22 7889999999999994 44444 446 89
Q ss_pred CCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCC
Q 048216 454 LLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCL 533 (654)
Q Consensus 454 L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~ 533 (654)
+++|++|++++|.+..++. +..+++|++|++++ . ....++. +..+++|+.|++++|.....+ .+..++
T Consensus 154 l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~---n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~------~~~~~~ 221 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY---N-QIEDISP-LASLTSLHYFTAYVNQITDIT------PVANMT 221 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT---S-CCCCCGG-GGGCTTCCEEECCSSCCCCCG------GGGGCT
T ss_pred CCCCcEEEecCCCcCCchh-hccCCCCCEEEccC---C-ccccccc-ccCCCccceeecccCCCCCCc------hhhcCC
Confidence 9999999999998888876 88899999999644 2 2233343 778889999999988665553 255666
Q ss_pred CCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCcccc
Q 048216 534 ESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLK 611 (654)
Q Consensus 534 ~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~ 611 (654)
+| .|+++++ +..+| .+..+ ++|++|++++|.+.. ++.+..+++|++|++++|..... .....+++|+
T Consensus 222 -~L~~L~l~~n~l~~~~----~~~~l-~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~ 290 (347)
T 4fmz_A 222 -RLNSLKIGNNKITDLS----PLANL-SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLN 290 (347)
T ss_dssp -TCCEEECCSSCCCCCG----GGTTC-TTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCS
T ss_pred -cCCEEEccCCccCCCc----chhcC-CCCCEEECCCCccCC--ChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCC
Confidence 88 9999874 44555 35677 899999999998643 46788899999999996654332 2345688999
Q ss_pred EEEEecCCCCcce-eEcCccccccceeeeecCcCCccccc
Q 048216 612 VLHLKSMLWLEEW-TMGIRAMPKLECLIINPCAHLKGFLN 650 (654)
Q Consensus 612 ~L~l~~~~~l~~l-~~~~~~~p~L~~L~i~~C~~L~~lP~ 650 (654)
.|+++++. +... +...+.+|+|+.|++++|+ +..+|+
T Consensus 291 ~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 291 SLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp EEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred EEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccC
Confidence 99999864 4433 3335568999999999984 666554
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.64 E-value=4.1e-16 Score=175.96 Aligned_cols=240 Identities=18% Similarity=0.124 Sum_probs=172.3
Q ss_pred ceeEEEEecCCCCccccccc-cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC---ChhHHhc
Q 048216 378 NVKRFTAHEKLNDFGFLDDF-DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL---PSSLLSS 453 (654)
Q Consensus 378 ~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l---P~~if~~ 453 (654)
+.+.+.+. +.....++ .+ +++|+.|.+.++... ....+..+++|++|++++| .+..+ |..+ +.
T Consensus 308 ~L~~L~l~-~n~l~~lp-~~~l~~L~~L~l~~n~~~------~~~~~~~l~~L~~L~ls~n----~l~~~~~~~~~~-~~ 374 (606)
T 3vq2_A 308 KWQSLSII-RCQLKQFP-TLDLPFLKSLTLTMNKGS------ISFKKVALPSLSYLDLSRN----ALSFSGCCSYSD-LG 374 (606)
T ss_dssp CCSEEEEE-SCCCSSCC-CCCCSSCCEEEEESCSSC------EECCCCCCTTCCEEECCSS----CEEEEEECCHHH-HC
T ss_pred cCCEEEcc-cccCcccc-cCCCCccceeeccCCcCc------cchhhccCCCCCEEECcCC----ccCCCcchhhhh-cc
Confidence 45556655 33333333 33 566666666665332 1124567778888888888 66655 7777 89
Q ss_pred CCCceEEcCCCccccccChhhhccccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCCcccchhhhcccccCC
Q 048216 454 LLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTEDILGRLLVQILILSC 532 (654)
Q Consensus 454 L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~ 532 (654)
+++|++|++++|.+..+|..+..+++|++|++++ .+.....+ ..+.++++|++|++++|..... ....+..+
T Consensus 375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~---n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l 447 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH---STLKRVTEFSAFLSLEKLLYLDISYTNTKID----FDGIFLGL 447 (606)
T ss_dssp CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTT---SEEESTTTTTTTTTCTTCCEEECTTSCCEEC----CTTTTTTC
T ss_pred CCcccEeECCCCccccchhhccCCCCCCeeECCC---CccCCccChhhhhccccCCEEECcCCCCCcc----chhhhcCC
Confidence 9999999999998888888888999999998643 22222233 5778889999999998876554 33456667
Q ss_pred CCCe-EEEEeec-CCC--CCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCc
Q 048216 533 LESL-KLANESK-MPR--RSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFP 608 (654)
Q Consensus 533 ~~~L-~L~l~~~-~~~--lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~ 608 (654)
+ +| .|+++++ +.. +|. ++..+ ++|++|+|++|.+.......++++++|++|+|++|... ...+.....++
T Consensus 448 ~-~L~~L~l~~n~l~~~~~~~---~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 521 (606)
T 3vq2_A 448 T-SLNTLKMAGNSFKDNTLSN---VFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLY 521 (606)
T ss_dssp T-TCCEEECTTCEEGGGEECS---CCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CEEGGGTTTCT
T ss_pred C-CCCEEECCCCcCCCcchHH---hhccC-CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC-CcCHHHccCCC
Confidence 7 89 9999874 332 677 77888 99999999999887666667889999999999965443 23344556788
Q ss_pred cccEEEEecCCCCcceeEcCcccc-ccceeeeecCcC
Q 048216 609 KLKVLHLKSMLWLEEWTMGIRAMP-KLECLIINPCAH 644 (654)
Q Consensus 609 ~L~~L~l~~~~~l~~l~~~~~~~p-~L~~L~i~~C~~ 644 (654)
+|+.|+++++ +++.+|.....+| +|+.|++.++|-
T Consensus 522 ~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 522 SLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred cCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 9999999985 5888887777787 599999988653
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=4.6e-16 Score=169.08 Aligned_cols=221 Identities=19% Similarity=0.131 Sum_probs=175.0
Q ss_pred ccCceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHH
Q 048216 375 LRENVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLL 451 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if 451 (654)
.+.++++|.+. ++....+ +..+ +++|+.|.+.++... .+.+..|.++++|++|+|++| .+..+|...|
T Consensus 73 ~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~ 143 (452)
T 3zyi_A 73 IPSNTRYLNLM-ENNIQMIQADTFRHLHHLEVLQLGRNSIR----QIEVGAFNGLASLNTLELFDN----WLTVIPSGAF 143 (452)
T ss_dssp CCTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSS----CCSBCCTTTS
T ss_pred CCCCccEEECc-CCcCceECHHHcCCCCCCCEEECCCCccC----CcChhhccCcccCCEEECCCC----cCCccChhhh
Confidence 45689999999 5444433 4555 899999999998764 355678999999999999999 8999998866
Q ss_pred hcCCCceEEcCCCccccccCh-hhhccccccceeccccccccCCcccch-hcCCCCCCCeEEEeccCCcccchhhhcccc
Q 048216 452 SSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYCN-SLENLNFISALHHCYCTEDILGRLLVQILI 529 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 529 (654)
+++++|++|+|++|.+..+|. .+.++++|++|++++ +.....++. .+.++++|++|++++|....+| .+
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~---~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~ 214 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE---LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------NL 214 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC---CTTCCEECTTTTTTCTTCCEEECTTSCCSSCC------CC
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC---CCCccccChhhccCCCCCCEEECCCCcccccc------cc
Confidence 999999999999999999876 688999999999643 334455554 5889999999999999776654 46
Q ss_pred cCCCCCe-EEEEeec-CCCC-CCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCC
Q 048216 530 LSCLESL-KLANESK-MPRR-SNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDG 606 (654)
Q Consensus 530 ~~~~~~L-~L~l~~~-~~~l-p~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~ 606 (654)
..++ +| .|+++++ +..+ |. ++..+ ++|++|+|++|.+.......+..+++|+.|+|++|.... ........
T Consensus 215 ~~l~-~L~~L~Ls~N~l~~~~~~---~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~ 288 (452)
T 3zyi_A 215 TPLV-GLEELEMSGNHFPEIRPG---SFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTP 288 (452)
T ss_dssp TTCT-TCCEEECTTSCCSEECGG---GGTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTSSTT
T ss_pred cccc-cccEEECcCCcCcccCcc---cccCc-cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-cChHHhcc
Confidence 6677 99 9999874 4444 55 78889 999999999999877777778999999999999665432 11122356
Q ss_pred CccccEEEEecCC
Q 048216 607 FPKLKVLHLKSML 619 (654)
Q Consensus 607 f~~L~~L~l~~~~ 619 (654)
+++|+.|++.+++
T Consensus 289 l~~L~~L~L~~Np 301 (452)
T 3zyi_A 289 LRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEccCCC
Confidence 8899999998854
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=6.4e-16 Score=167.31 Aligned_cols=221 Identities=16% Similarity=0.145 Sum_probs=174.5
Q ss_pred ccCceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHH
Q 048216 375 LRENVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLL 451 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if 451 (654)
.+.+++.+.+. ++....+ +..+ +++|+.|.+.++... .+.+..|.++++|++|+|++| .+..+|...|
T Consensus 62 ~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~ 132 (440)
T 3zyj_A 62 ISTNTRLLNLH-ENQIQIIKVNSFKHLRHLEILQLSRNHIR----TIEIGAFNGLANLNTLELFDN----RLTTIPNGAF 132 (440)
T ss_dssp CCTTCSEEECC-SCCCCEECTTTTSSCSSCCEEECCSSCCC----EECGGGGTTCSSCCEEECCSS----CCSSCCTTTS
T ss_pred CCCCCcEEEcc-CCcCCeeCHHHhhCCCCCCEEECCCCcCC----ccChhhccCCccCCEEECCCC----cCCeeCHhHh
Confidence 45678999999 5444433 3455 899999999998764 355678999999999999999 8999998655
Q ss_pred hcCCCceEEcCCCccccccCh-hhhccccccceeccccccccCCcccch-hcCCCCCCCeEEEeccCCcccchhhhcccc
Q 048216 452 SSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYCN-SLENLNFISALHHCYCTEDILGRLLVQILI 529 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 529 (654)
..+++|++|+|++|.+..+|. .+.++++|++|++++ +.....++. .+.++++|++|++++|....+| .+
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~---~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~ 203 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE---LKRLSYISEGAFEGLSNLRYLNLAMCNLREIP------NL 203 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC---CTTCCEECTTTTTTCSSCCEEECTTSCCSSCC------CC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC---CCCcceeCcchhhcccccCeecCCCCcCcccc------cc
Confidence 999999999999999998876 688999999999643 333444554 6889999999999999777664 46
Q ss_pred cCCCCCe-EEEEeec-CCCC-CCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCC
Q 048216 530 LSCLESL-KLANESK-MPRR-SNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDG 606 (654)
Q Consensus 530 ~~~~~~L-~L~l~~~-~~~l-p~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~ 606 (654)
..++ +| .|+++++ +..+ |. .+..+ ++|++|+|++|.+.......+.++++|+.|+|++|..... .......
T Consensus 204 ~~l~-~L~~L~Ls~N~l~~~~~~---~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~ 277 (440)
T 3zyj_A 204 TPLI-KLDELDLSGNHLSAIRPG---SFQGL-MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL-PHDLFTP 277 (440)
T ss_dssp TTCS-SCCEEECTTSCCCEECTT---TTTTC-TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC-CTTTTSS
T ss_pred CCCc-ccCEEECCCCccCccChh---hhccC-ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc-ChhHhcc
Confidence 6677 99 9999874 4444 56 77889 9999999999998777777889999999999996654321 1122356
Q ss_pred CccccEEEEecCC
Q 048216 607 FPKLKVLHLKSML 619 (654)
Q Consensus 607 f~~L~~L~l~~~~ 619 (654)
+++|+.|++++.+
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 7899999998754
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=170.42 Aligned_cols=130 Identities=18% Similarity=0.064 Sum_probs=75.0
Q ss_pred ccCceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHH
Q 048216 375 LRENVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLL 451 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if 451 (654)
.+..++++.+. ++....+ +..+ +++|++|.+.++... .+.+..|.++++|++|+|++| .+..+|...|
T Consensus 26 l~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~ 96 (570)
T 2z63_A 26 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGN----PIQSLALGAF 96 (570)
T ss_dssp SCSSCCEEECC-SCCCCEECTTTTTTCSSCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTC----CCCEECTTTT
T ss_pred ccccccEEEcc-CCccCccChhHhhCCCCceEEECCCCcCC----ccCcccccCchhCCEEeCcCC----cCCccCHhhh
Confidence 34567777777 4333322 2334 677777777776543 244456677777777777777 5655553333
Q ss_pred hcCCCceEEcCCCccccccCh-hhhccccccceeccccccccCCc-ccchhcCCCCCCCeEEEeccC
Q 048216 452 SSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPG-KYCNSLENLNFISALHHCYCT 516 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~-~l~~~l~~l~~L~~L~l~~~~ 516 (654)
+++.+|++|++++|.+..+|. .++++++|++|++++ ..... .+|..++++++|++|++++|.
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~---n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH---NLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS---SCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCC---CccceecChhhhcccCCCCEEeCcCCc
Confidence 666666666666666666554 466666666666432 11111 245556666666666665553
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=9.8e-16 Score=166.46 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=54.4
Q ss_pred CceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCc-CChh--H
Q 048216 377 ENVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKS-LPSS--L 450 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~-lP~~--i 450 (654)
.+.+++.+..+.....+ +..+ +++|++|.+.++... ...+..|.++++|++|+|++| .+.. .|.. +
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~ 125 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL----QLETGAFNGLANLEVLTLTQC----NLDGAVLSGNFF 125 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC----EECTTTTTTCTTCCEEECTTS----CCBTHHHHSSTT
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccC----ccChhhccCcccCCEEeCCCC----CCCccccCcccc
Confidence 45666666622222122 2233 666666666666543 233455666666666666666 4543 2222 3
Q ss_pred HhcCCCceEEcCCCcccccc-Chh-hhccccccceecc
Q 048216 451 LSSLLNLYTLDMPFSYIDHT-ADE-FWKVSKLRYLNFG 486 (654)
Q Consensus 451 f~~L~~L~~L~L~~~~l~~l-P~~-i~~L~~L~~L~l~ 486 (654)
+++++|++|++++|.+..+ |.. +.++++|++|+++
T Consensus 126 -~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 126 -KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp -TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred -cCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 6666666666666655554 333 5666666666654
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=177.38 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=89.7
Q ss_pred ccCceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC-ChhHH
Q 048216 375 LRENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL-PSSLL 451 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~if 451 (654)
.+.++++|.+..+......+..+ +++|++|.+.++... ..+.+..|.++++|++|+|++| .+..+ |..+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N----~l~~~~p~~~- 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSS----KIYFLHPDAF- 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTC----CCCEECTTSS-
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCC----cCcccCHhHc-
Confidence 56788999998443333334555 889999999887542 2344677889999999999998 67665 5555
Q ss_pred hcCCCceEEcCCCccccc-cChh--hhccccccceeccccccccCCc-ccchhcCCCCCCCeEEEeccC
Q 048216 452 SSLLNLYTLDMPFSYIDH-TADE--FWKVSKLRYLNFGAITLPAHPG-KYCNSLENLNFISALHHCYCT 516 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~-lP~~--i~~L~~L~~L~l~~l~~l~~~~-~l~~~l~~l~~L~~L~l~~~~ 516 (654)
++|++|++|+|++|.+.. +|.. +++|++|++|++++ ..... ..+..++++++|++|++++|.
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~---N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK---NQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES---CCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC---CcccccccchhHhhCCCCCEEECCCCc
Confidence 888888888888887665 5554 77888888888644 21111 123456667777777776663
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=2.5e-15 Score=163.90 Aligned_cols=239 Identities=16% Similarity=0.148 Sum_probs=159.4
Q ss_pred ccCceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHh
Q 048216 375 LRENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLS 452 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~ 452 (654)
...+++++.+. ++....++. + +++|+.|.+.++.... . +. +.++++|++|++++| .+..+|. + +
T Consensus 66 ~l~~L~~L~Ls-~n~l~~~~~-~~~l~~L~~L~l~~n~l~~----~-~~-~~~l~~L~~L~L~~n----~l~~~~~-~-~ 131 (466)
T 1o6v_A 66 YLNNLTQINFS-NNQLTDITP-LKNLTKLVDILMNNNQIAD----I-TP-LANLTNLTGLTLFNN----QITDIDP-L-K 131 (466)
T ss_dssp GCTTCCEEECC-SSCCCCCGG-GTTCTTCCEEECCSSCCCC----C-GG-GTTCTTCCEEECCSS----CCCCCGG-G-T
T ss_pred hhcCCCEEECC-CCccCCchh-hhccccCCEEECCCCcccc----C-hh-hcCCCCCCEEECCCC----CCCCChH-H-c
Confidence 34678888888 544443444 4 8888888888776542 2 22 788888888888888 7777775 5 8
Q ss_pred cCCCceEEcCCCccccccChhhhccccccceeccc----------ccccc-------CCcccchhc--------------
Q 048216 453 SLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGA----------ITLPA-------HPGKYCNSL-------------- 501 (654)
Q Consensus 453 ~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~----------l~~l~-------~~~~l~~~l-------------- 501 (654)
++++|++|++++|.+..+|. ++++++|++|++++ +++|+ ....+ ..+
T Consensus 132 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 132 NLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNN 209 (466)
T ss_dssp TCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS
T ss_pred CCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCC
Confidence 88888888888887766653 45554444444321 01111 01111 123
Q ss_pred --------CCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeecc
Q 048216 502 --------ENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIEL 571 (654)
Q Consensus 502 --------~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l 571 (654)
+.+++|++|++++|....+ ..+..++ +| .|+++++ +..++ .+..+ ++|+.|++++|.+
T Consensus 210 ~l~~~~~~~~l~~L~~L~l~~n~l~~~------~~l~~l~-~L~~L~l~~n~l~~~~----~~~~l-~~L~~L~l~~n~l 277 (466)
T 1o6v_A 210 QISDITPLGILTNLDELSLNGNQLKDI------GTLASLT-NLTDLDLANNQISNLA----PLSGL-TKLTELKLGANQI 277 (466)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCC------GGGGGCT-TCSEEECCSSCCCCCG----GGTTC-TTCSEEECCSSCC
T ss_pred cccccccccccCCCCEEECCCCCcccc------hhhhcCC-CCCEEECCCCccccch----hhhcC-CCCCEEECCCCcc
Confidence 3444555555555433332 3455667 99 9999884 44555 45678 9999999999987
Q ss_pred CCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcccc
Q 048216 572 MDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFL 649 (654)
Q Consensus 572 ~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP 649 (654)
.. .+.+..+++|+.|++++|...... ....+++|+.|+++++ .+..++. .+.+++|+.|++.+| ++..+|
T Consensus 278 ~~--~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~ 347 (466)
T 1o6v_A 278 SN--ISPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVS 347 (466)
T ss_dssp CC--CGGGTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG
T ss_pred Cc--cccccCCCccCeEEcCCCcccCch---hhcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCch
Confidence 43 344889999999999966554321 1457899999999986 5666543 568999999999998 666654
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=168.39 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=60.4
Q ss_pred cCceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCc--CChhH
Q 048216 376 RENVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKS--LPSSL 450 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~--lP~~i 450 (654)
..+.+++.+. ++..... +..+ +++|++|.+.++... .+ +.. .+++|++|+|++| .+.. +|..+
T Consensus 44 l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~l-p~~--~l~~L~~L~L~~N----~l~~~~~p~~~ 111 (520)
T 2z7x_B 44 LSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHNKLV----KI-SCH--PTVNLKHLDLSFN----AFDALPICKEF 111 (520)
T ss_dssp CTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSSCCC----EE-ECC--CCCCCSEEECCSS----CCSSCCCCGGG
T ss_pred cccccEEecC-CCccCCcChHHhhcccCCCEEecCCCcee----ec-Ccc--ccCCccEEeccCC----ccccccchhhh
Confidence 3567777777 4433323 4455 777888888777653 12 222 6777888888888 6664 46666
Q ss_pred HhcCCCceEEcCCCccccccChhhhccccc--cceecc
Q 048216 451 LSSLLNLYTLDMPFSYIDHTADEFWKVSKL--RYLNFG 486 (654)
Q Consensus 451 f~~L~~L~~L~L~~~~l~~lP~~i~~L~~L--~~L~l~ 486 (654)
+++++|++|++++|.+.. ..+..+++| ++|+++
T Consensus 112 -~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 112 -GNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp -GGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEE
T ss_pred -ccCCcceEEEecCcccch--hhccccccceeeEEEee
Confidence 788888888887776654 245555555 555543
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=8.1e-16 Score=156.31 Aligned_cols=201 Identities=18% Similarity=0.143 Sum_probs=158.2
Q ss_pred cceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCcccccc-ChhhhccccccceeccccccccCCccc-chhcCC
Q 048216 426 FKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHT-ADEFWKVSKLRYLNFGAITLPAHPGKY-CNSLEN 503 (654)
Q Consensus 426 l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~l~~l~~~~~l-~~~l~~ 503 (654)
.+.|+.|+|++| .+..+|...|+++++|++|++++|.+..+ |..+.++++|++|++++ ......+ +..+.+
T Consensus 31 ~~~l~~L~l~~n----~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGN----RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD---NAQLRSVDPATFHG 103 (285)
T ss_dssp CTTCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS---CTTCCCCCTTTTTT
T ss_pred CCCceEEEeeCC----cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC---CCCccccCHHHhcC
Confidence 468999999999 89988865459999999999999988887 77899999999999644 3213444 678899
Q ss_pred CCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCcccccc
Q 048216 504 LNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEK 581 (654)
Q Consensus 504 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~ 581 (654)
+++|++|++++|....+ ....+..++ +| .|++++ .+..+|.. .+..+ ++|++|+|++|.+.......+..
T Consensus 104 l~~L~~L~l~~n~l~~~----~~~~~~~l~-~L~~L~l~~n~l~~~~~~--~~~~l-~~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQEL----GPGLFRGLA-ALQYLYLQDNALQALPDD--TFRDL-GNLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp CTTCCEEECTTSCCCCC----CTTTTTTCT-TCCEEECCSSCCCCCCTT--TTTTC-TTCCEEECCSSCCCEECTTTTTT
T ss_pred CcCCCEEECCCCcCCEE----CHhHhhCCc-CCCEEECCCCcccccCHh--HhccC-CCccEEECCCCcccccCHHHhcC
Confidence 99999999999977665 235566777 99 999987 45566641 46788 99999999999986555556889
Q ss_pred CcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEc-CccccccceeeeecCc
Q 048216 582 LPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IRAMPKLECLIINPCA 643 (654)
Q Consensus 582 l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~-~~~~p~L~~L~i~~C~ 643 (654)
+++|++|++++|... ...+.....+++|+.|+++++ .+..++.. ...+++|+.|++++++
T Consensus 176 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccCEEECCCCccc-ccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 999999999965432 222334456889999999984 67776643 5678999999998875
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=5.6e-16 Score=159.20 Aligned_cols=225 Identities=17% Similarity=0.152 Sum_probs=172.5
Q ss_pred ccCceeEEEEecCCCCcccccc-c--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHH
Q 048216 375 LRENVKRFTAHEKLNDFGFLDD-F--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLL 451 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~~~-~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if 451 (654)
.+.+++++.+. ++....++.. + +++|+.|.+.++.... ....+..+..+++|++|+|++| .+..+|..+
T Consensus 26 ~~~~l~~L~L~-~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n----~i~~l~~~~- 97 (306)
T 2z66_A 26 IPSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSSNGLSF--KGCCSQSDFGTTSLKYLDLSFN----GVITMSSNF- 97 (306)
T ss_dssp CCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCE--EEEEEHHHHSCSCCCEEECCSC----SEEEEEEEE-
T ss_pred CCCCCCEEECC-CCccCccCHhHhhccccCCEEECCCCccCc--ccCcccccccccccCEEECCCC----ccccChhhc-
Confidence 45689999999 5555445554 3 8999999999887541 1112355667999999999999 899999988
Q ss_pred hcCCCceEEcCCCccccccCh--hhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccc
Q 048216 452 SSLLNLYTLDMPFSYIDHTAD--EFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILI 529 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 529 (654)
..+++|++|++++|.+..+|. .+.++++|++|++++ .......+..+.++++|++|++++|...... ....+
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~---n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~ 171 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH---THTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIF 171 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT---SCCEECSTTTTTTCTTCCEEECTTCEEGGGE---ECSCC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC---CcCCccchhhcccCcCCCEEECCCCcccccc---chhHH
Confidence 999999999999999998875 789999999999643 3333445677889999999999998654310 23556
Q ss_pred cCCCCCe-EEEEeec-CCCC-CCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCC
Q 048216 530 LSCLESL-KLANESK-MPRR-SNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDG 606 (654)
Q Consensus 530 ~~~~~~L-~L~l~~~-~~~l-p~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~ 606 (654)
..++ +| .|+++++ +..+ |. ++..+ ++|++|+|++|.+.......+..+++|++|+|++|...+ ..+.....
T Consensus 172 ~~l~-~L~~L~Ls~n~l~~~~~~---~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~ 245 (306)
T 2z66_A 172 TELR-NLTFLDLSQCQLEQLSPT---AFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQH 245 (306)
T ss_dssp TTCT-TCCEEECTTSCCCEECTT---TTTTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB-CSSSSCCC
T ss_pred hhCc-CCCEEECCCCCcCCcCHH---HhcCC-CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc-cCHHHHHh
Confidence 7777 99 9999874 4544 66 78888 999999999999876666678899999999999665432 22223345
Q ss_pred Cc-cccEEEEecCC
Q 048216 607 FP-KLKVLHLKSML 619 (654)
Q Consensus 607 f~-~L~~L~l~~~~ 619 (654)
+| +|++|++++++
T Consensus 246 ~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 246 FPSSLAFLNLTQND 259 (306)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhccCCEEEccCCC
Confidence 64 89999999843
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=158.80 Aligned_cols=223 Identities=18% Similarity=0.142 Sum_probs=126.5
Q ss_pred cCceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCCh-hHH
Q 048216 376 RENVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPS-SLL 451 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~-~if 451 (654)
..+++++.+. ++..... +..+ +++|++|.+.++... .+.+..|.++++|++|+|++| .+..+|. ..|
T Consensus 75 l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n----~l~~l~~~~~~ 145 (353)
T 2z80_A 75 CVNLQALVLT-SNGINTIEEDSFSSLGSLEHLDLSYNYLS----NLSSSWFKPLSSLTFLNLLGN----PYKTLGETSLF 145 (353)
T ss_dssp CTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCS----SCCHHHHTTCTTCSEEECTTC----CCSSSCSSCSC
T ss_pred CCCCCEEECC-CCccCccCHhhcCCCCCCCEEECCCCcCC----cCCHhHhCCCccCCEEECCCC----CCcccCchhhh
Confidence 3556777776 3333323 3334 677777777776653 234455677777777777777 6777776 333
Q ss_pred hcCCCceEEcCCCc-ccccc-ChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccc
Q 048216 452 SSLLNLYTLDMPFS-YIDHT-ADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILI 529 (654)
Q Consensus 452 ~~L~~L~~L~L~~~-~l~~l-P~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 529 (654)
+++++|++|++++| .+..+ |..+.++++|++|++++ .+.....|..+.++++|++|++++|....++ ...+
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~---n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~ 218 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA---SDLQSYEPKSLKSIQNVSHLILHMKQHILLL----EIFV 218 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE---TTCCEECTTTTTTCSEEEEEEEECSCSTTHH----HHHH
T ss_pred ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC---CCcCccCHHHHhccccCCeecCCCCccccch----hhhh
Confidence 77777777777777 56665 34577777777777533 2222334666777777777777777554443 1112
Q ss_pred cCCCCCe-EEEEeec-CCCCCCc-chhhhcCCCCccEEEEEeeccCCCC----ccccccCcccceEEEeecccCCCeeEE
Q 048216 530 LSCLESL-KLANESK-MPRRSNI-ILAEYQFPPSLTHLSFSNIELMDDP----MPALEKLPVLQVLKLKQNSYSGRKLAC 602 (654)
Q Consensus 530 ~~~~~~L-~L~l~~~-~~~lp~~-~~~~~~lp~~L~~L~L~~~~l~~~~----l~~l~~l~~L~~L~L~~~~~~~~~l~~ 602 (654)
..++ +| .|+++++ +..++.. +...... +.++.++|+++.+.... +..+.++++|+.|+|++|... .++.
T Consensus 219 ~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~~-~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~ 294 (353)
T 2z80_A 219 DVTS-SVECLELRDTDLDTFHFSELSTGETN-SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPD 294 (353)
T ss_dssp HHTT-TEEEEEEESCBCTTCCCC------CC-CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCT
T ss_pred hhcc-cccEEECCCCcccccccccccccccc-chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC--ccCH
Confidence 2344 77 7777653 3332210 0011123 56666777766653321 223556777777777754432 2332
Q ss_pred c-CCCCccccEEEEecC
Q 048216 603 S-SDGFPKLKVLHLKSM 618 (654)
Q Consensus 603 ~-~~~f~~L~~L~l~~~ 618 (654)
. ...+++|++|+++++
T Consensus 295 ~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCEEEeeCC
Confidence 2 245667777777764
No 52
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=2.7e-15 Score=154.32 Aligned_cols=192 Identities=15% Similarity=0.143 Sum_probs=138.6
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+++|++|.+.++.... + +.+..+++|++|+|++| .+..+|. + +++++|++|++++|.+..+| .+.++
T Consensus 40 l~~L~~L~l~~~~i~~-----l-~~~~~l~~L~~L~L~~n----~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-----I-EGVQYLNNLIGLELKDN----QITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECCSS----CCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred cCCcCEEEeeCCCccC-----c-hhhhccCCCCEEEccCC----cCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCC
Confidence 7888888888876542 2 24778888999999998 7888887 6 88999999999998888876 68888
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhh
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEY 555 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~ 555 (654)
++|++|++++ . ....++. +..+++|++|++++|....++ . +..++ +| .|+++++ +..+| .+.
T Consensus 107 ~~L~~L~l~~---n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~---~---l~~l~-~L~~L~l~~n~l~~~~----~l~ 170 (308)
T 1h6u_A 107 QSIKTLDLTS---T-QITDVTP-LAGLSNLQVLYLDLNQITNIS---P---LAGLT-NLQYLSIGNAQVSDLT----PLA 170 (308)
T ss_dssp TTCCEEECTT---S-CCCCCGG-GTTCTTCCEEECCSSCCCCCG---G---GGGCT-TCCEEECCSSCCCCCG----GGT
T ss_pred CCCCEEECCC---C-CCCCchh-hcCCCCCCEEECCCCccCcCc---c---ccCCC-CccEEEccCCcCCCCh----hhc
Confidence 8999998654 2 2233443 788888999999888766554 2 55566 88 8888774 44555 456
Q ss_pred cCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCccee
Q 048216 556 QFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWT 625 (654)
Q Consensus 556 ~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~ 625 (654)
.+ ++|+.|++++|.+. .++.+..+++|++|++++|...... ....+++|+.|+++++ .+...+
T Consensus 171 ~l-~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 171 NL-SKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp TC-TTCCEEECCSSCCC--CCGGGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEE-EEECCC
T ss_pred CC-CCCCEEECCCCccC--cChhhcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCC-eeecCC
Confidence 67 88888888888764 3444788888888888865543221 2456788888888874 344443
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=5.4e-15 Score=160.50 Aligned_cols=231 Identities=16% Similarity=0.121 Sum_probs=125.0
Q ss_pred CceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcC
Q 048216 377 ENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSL 454 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L 454 (654)
.+++++.+. ++....++ .+ +++|+.|.+.++.... + .+..+++|++|++++| .+..+| + +++
T Consensus 42 ~~L~~L~Ls-~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~----~---~~~~l~~L~~L~Ls~N----~l~~~~--~-~~l 105 (457)
T 3bz5_A 42 ATLTSLDCH-NSSITDMT-GIEKLTGLTKLICTSNNITT----L---DLSQNTNLTYLACDSN----KLTNLD--V-TPL 105 (457)
T ss_dssp TTCCEEECC-SSCCCCCT-TGGGCTTCSEEECCSSCCSC----C---CCTTCTTCSEEECCSS----CCSCCC--C-TTC
T ss_pred CCCCEEEcc-CCCcccCh-hhcccCCCCEEEccCCcCCe----E---ccccCCCCCEEECcCC----CCceee--c-CCC
Confidence 445566665 33333233 23 5666666666655431 1 1555666666666666 555554 4 556
Q ss_pred CCceEEcCCCccccccChhhhccccccceeccc------------------cccccCCcccchhcCCCCCCCeEEEeccC
Q 048216 455 LNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGA------------------ITLPAHPGKYCNSLENLNFISALHHCYCT 516 (654)
Q Consensus 455 ~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~------------------l~~l~~~~~l~~~l~~l~~L~~L~l~~~~ 516 (654)
++|++|++++|.+..+| ++++++|++|++++ +........+ .++.+++|++|++++|.
T Consensus 106 ~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp TTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 66666666666555554 55555566555433 1111111112 35556666666666665
Q ss_pred CcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecc
Q 048216 517 EDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNS 594 (654)
Q Consensus 517 ~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~ 594 (654)
...+| +..++ +| .|.++++ +..++ +..+ ++|++|++++|++.. +| ++.+++|++|++++|.
T Consensus 182 l~~l~-------l~~l~-~L~~L~l~~N~l~~~~-----l~~l-~~L~~L~Ls~N~l~~--ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 182 ITELD-------VSQNK-LLNRLNCDTNNITKLD-----LNQN-IQLTFLDCSSNKLTE--ID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CCCCC-------CTTCT-TCCEEECCSSCCSCCC-----CTTC-TTCSEEECCSSCCSC--CC-CTTCTTCSEEECCSSC
T ss_pred cceec-------cccCC-CCCEEECcCCcCCeec-----cccC-CCCCEEECcCCcccc--cC-ccccCCCCEEEeeCCc
Confidence 44431 34455 67 7777653 33332 3456 778888888887654 33 6777888888888655
Q ss_pred cCCCeeEEcCCCCccccEEEEe----------cCCCCcceeEcCccccccceeeeecCcCCccccc
Q 048216 595 YSGRKLACSSDGFPKLKVLHLK----------SMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLN 650 (654)
Q Consensus 595 ~~~~~l~~~~~~f~~L~~L~l~----------~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~ 650 (654)
..+.. .+.|++|+.|++. ++..+..+| .+.+++|+.|++++|+.+..+|.
T Consensus 245 l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 245 LTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 44321 3345555444433 333233333 24567777777777766666664
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=8e-15 Score=171.67 Aligned_cols=136 Identities=19% Similarity=0.093 Sum_probs=103.7
Q ss_pred ccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC-ChhHHhcCCCceEEcCCCccccc
Q 048216 391 FGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL-PSSLLSSLLNLYTLDMPFSYIDH 469 (654)
Q Consensus 391 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~if~~L~~L~~L~L~~~~l~~ 469 (654)
..+|. +.+++++|.+.++... ...+..|.++++|++|+|++|. .+..+ |..+ ++|++|++|+|++|.+..
T Consensus 17 ~~vP~-lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~---~~~~i~~~~f-~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 17 TQVPQ-VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQY---TPLTIDKEAF-RNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp SCCCS-SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTC---CCCEECTTTT-SSCTTCCEEECTTCCCCE
T ss_pred CCCCC-CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCC---CccccCHHHh-cCCCCCCEEECCCCcCcc
Confidence 33555 6789999999998764 3556789999999999999996 56677 5556 999999999999998887
Q ss_pred c-ChhhhccccccceeccccccccCCcccchh--cCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee
Q 048216 470 T-ADEFWKVSKLRYLNFGAITLPAHPGKYCNS--LENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES 542 (654)
Q Consensus 470 l-P~~i~~L~~L~~L~l~~l~~l~~~~~l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~ 542 (654)
+ |..+++|++|++|++++ .......|.. ++++++|++|++++|.....+ ....+..++ +| .|++++
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~---n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~L~-~L~~L~Ls~ 157 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYF---CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY---LHPSFGKLN-SLKSIDFSS 157 (844)
T ss_dssp ECTTSSCSCSSCCCEECTT---CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC---CCGGGGTCS-SCCEEEEES
T ss_pred cCHhHccCCcccCEeeCcC---CCCCcccccCccccccCCCCEEECCCCcccccc---cchhHhhCC-CCCEEECCC
Confidence 6 88999999999999654 3223334544 899999999999999765442 113344555 66 666654
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=3.9e-15 Score=170.31 Aligned_cols=131 Identities=19% Similarity=0.156 Sum_probs=96.8
Q ss_pred ccCceeEEEEecCCCCcccc-ccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHH
Q 048216 375 LRENVKRFTAHEKLNDFGFL-DDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLL 451 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if 451 (654)
.+.+++++.+. ++....++ ..+ +++|++|.+.++... ...+..|.++++|++|+|++| .+..+|...|
T Consensus 23 ~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n----~l~~l~~~~~ 93 (680)
T 1ziw_A 23 LPTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHN----ELSQLSDKTF 93 (680)
T ss_dssp SCTTCSEEECC-SSCCCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSS----CCCCCCTTTT
T ss_pred cCCCCcEEECC-CCCCCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCC----ccCccChhhh
Confidence 45689999998 54444344 345 899999999887754 245677889999999999999 8888988544
Q ss_pred hcCCCceEEcCCCccccccC-hhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCC
Q 048216 452 SSLLNLYTLDMPFSYIDHTA-DEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTE 517 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP-~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~ 517 (654)
+++++|++|++++|.+..+| ..++++++|++|++++ .......+..++++++|++|++++|..
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~---n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH---NGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS---SCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCC---CcccccCchhhcccccCCEEEccCCcc
Confidence 99999999999999888876 5688999999999654 222223345566666666666666543
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=8e-15 Score=147.73 Aligned_cols=199 Identities=19% Similarity=0.169 Sum_probs=140.7
Q ss_pred CceeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCC
Q 048216 377 ENVKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLN 456 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~ 456 (654)
...+.+.+. +.....++..+.++++.|.+.++... .+.+..|.++++|++|+|++| .+..+|..+|.++++
T Consensus 16 ~~~~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n----~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 16 NNKNSVDCS-SKKLTAIPSNIPADTKKLDLQSNKLS----SLPSKAFHRLTKLRLLYLNDN----KLQTLPAGIFKELKN 86 (270)
T ss_dssp TTTTEEECT-TSCCSSCCSCCCTTCSEEECCSSCCS----CCCTTSSSSCTTCCEEECCSS----CCSCCCTTTTSSCTT
T ss_pred CCCCEEEcc-CCCCCccCCCCCCCCCEEECcCCCCC----eeCHHHhcCCCCCCEEECCCC----ccCeeChhhhcCCCC
Confidence 345566666 44444456555778999998887764 244557888999999999999 888888887788999
Q ss_pred ceEEcCCCccccccChh-hhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCC
Q 048216 457 LYTLDMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLES 535 (654)
Q Consensus 457 L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~ 535 (654)
|++|++++|.+..+|.. +.++++|++|++++ .......+..+.++++|++|++++|....++ ...+..++ +
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~-~ 158 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDR---NQLKSLPPRVFDSLTKLTYLSLGYNELQSLP----KGVFDKLT-S 158 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCS---SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCT-T
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCC---CccCeeCHHHhCcCcCCCEEECCCCcCCccC----HhHccCCc-c
Confidence 99999999988888754 57889999998643 2122223455788889999999888666553 23355566 7
Q ss_pred e-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeeccc
Q 048216 536 L-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSY 595 (654)
Q Consensus 536 L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~ 595 (654)
| .|+++++ +..+|.. .+..+ ++|++|+|++|.+...+...+..+++|+.|+|++|.+
T Consensus 159 L~~L~L~~n~l~~~~~~--~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEG--AFDKL-TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCEEECCSSCCSCCCTT--TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cceeEecCCcCcEeChh--HhccC-CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 8 8888763 4555541 35567 7888888888877654444577788888888875543
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=8.6e-16 Score=171.84 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=51.3
Q ss_pred CceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCCh-hHHh
Q 048216 377 ENVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPS-SLLS 452 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~-~if~ 452 (654)
.+.+++.+. ++....+ +..+ +++|++|.+.++... ...+..|.++++|++|++++| .+..+|. .+ +
T Consensus 52 ~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n----~l~~l~~~~~-~ 121 (570)
T 2z63_A 52 PELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVET----NLASLENFPI-G 121 (570)
T ss_dssp SSCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTS----CCCCSTTCSC-T
T ss_pred CCceEEECC-CCcCCccCcccccCchhCCEEeCcCCcCC----ccCHhhhcCcccccccccccc----ccccCCCccc-c
Confidence 456666665 3322222 2233 566666666665542 133345556666666666666 4555444 23 5
Q ss_pred cCCCceEEcCCCccccc--cChhhhccccccceecc
Q 048216 453 SLLNLYTLDMPFSYIDH--TADEFWKVSKLRYLNFG 486 (654)
Q Consensus 453 ~L~~L~~L~L~~~~l~~--lP~~i~~L~~L~~L~l~ 486 (654)
++++|++|++++|.+.. +|..++++++|++|+++
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 55555555555554443 45555555555555543
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=2.6e-15 Score=155.10 Aligned_cols=213 Identities=15% Similarity=0.049 Sum_probs=127.7
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+++|+.|.+.++... ...+..|.++++|++|+|++| .+..+++ + +.+++|++|++++|.+..+| .+
T Consensus 33 ~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~----~~ 98 (317)
T 3o53_A 33 AWNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSN----VLYETLD-L-ESLSTLRTLDLNNNYVQELL----VG 98 (317)
T ss_dssp GGGCSEEECTTSCCC----CCCHHHHTTCTTCCEEECTTS----CCEEEEE-E-TTCTTCCEEECCSSEEEEEE----EC
T ss_pred CCCCCEEECcCCccC----cCCHHHhhCCCcCCEEECCCC----cCCcchh-h-hhcCCCCEEECcCCcccccc----CC
Confidence 456677766666543 234455666677777777776 5555544 4 66777777777776666555 23
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCC-CCcchhh
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRR-SNIILAE 554 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~l-p~~~~~~ 554 (654)
++|++|++++ . ....++. ..+++|++|++++|....++ ...+..++ +| .|+++++ +..+ |. .+
T Consensus 99 ~~L~~L~l~~---n-~l~~~~~--~~~~~L~~L~l~~N~l~~~~----~~~~~~l~-~L~~L~Ls~N~l~~~~~~---~~ 164 (317)
T 3o53_A 99 PSIETLHAAN---N-NISRVSC--SRGQGKKNIYLANNKITMLR----DLDEGCRS-RVQYLDLKLNEIDTVNFA---EL 164 (317)
T ss_dssp TTCCEEECCS---S-CCSEEEE--CCCSSCEEEECCSSCCCSGG----GBCTGGGS-SEEEEECTTSCCCEEEGG---GG
T ss_pred CCcCEEECCC---C-ccCCcCc--cccCCCCEEECCCCCCCCcc----chhhhccC-CCCEEECCCCCCCcccHH---HH
Confidence 5666666433 2 1122222 23567777777777655542 23444455 77 7777763 3332 22 33
Q ss_pred -hcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccc
Q 048216 555 -YQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPK 633 (654)
Q Consensus 555 -~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~ 633 (654)
..+ ++|++|+|++|.+.. ++....+++|++|+|++|... .++.....+++|+.|++++ +.+..++.....+++
T Consensus 165 ~~~l-~~L~~L~L~~N~l~~--~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 165 AASS-DTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQN 238 (317)
T ss_dssp GGGT-TTCCEEECTTSCCCE--EECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTT
T ss_pred hhcc-CcCCEEECCCCcCcc--cccccccccCCEEECCCCcCC--cchhhhcccCcccEEECcC-CcccchhhHhhcCCC
Confidence 356 778888888777532 344455777888888754432 2333344567788888877 356777666666778
Q ss_pred cceeeeecCcC
Q 048216 634 LECLIINPCAH 644 (654)
Q Consensus 634 L~~L~i~~C~~ 644 (654)
|+.|++++|+-
T Consensus 239 L~~L~l~~N~~ 249 (317)
T 3o53_A 239 LEHFDLRGNGF 249 (317)
T ss_dssp CCEEECTTCCC
T ss_pred CCEEEccCCCc
Confidence 88888877643
No 59
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=5.7e-15 Score=148.99 Aligned_cols=203 Identities=15% Similarity=0.104 Sum_probs=128.5
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChh-hhc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADE-FWK 476 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~-i~~ 476 (654)
+++|+.|.+.++.... ...+..+++|++|+|++| .+..+| .+ +++++|++|++++|.+..+|.. +.+
T Consensus 40 l~~L~~L~l~~~~i~~------~~~l~~l~~L~~L~l~~n----~l~~~~-~l-~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS------VQGIQYLPNVRYLALGGN----KLHDIS-AL-KELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HTTCCEEECTTSCCCC------CTTGGGCTTCCEEECTTS----CCCCCG-GG-TTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccceeeeeeCCCCccc------ccccccCCCCcEEECCCC----CCCCch-hh-cCCCCCCEEECCCCccCccChhHhcC
Confidence 7788888887776541 134677888888888888 777765 56 8888888888888888877654 578
Q ss_pred cccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhh
Q 048216 477 VSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAE 554 (654)
Q Consensus 477 L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~ 554 (654)
+++|++|++++ .+.....+..++++++|++|++++|....++ ...+..++ +| .|+++++ +..+|.. .+
T Consensus 108 l~~L~~L~L~~---n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~-~L~~L~l~~n~l~~~~~~--~~ 177 (272)
T 3rfs_A 108 LTNLKELVLVE---NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP----KGVFDKLT-NLTELDLSYNQLQSLPEG--VF 177 (272)
T ss_dssp CTTCCEEECTT---SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCT-TCCEEECCSSCCCCCCTT--TT
T ss_pred CcCCCEEECCC---CcCCccCHHHhccCCCCCEEECCCCccCccC----HHHhccCc-cCCEEECCCCCcCccCHH--Hh
Confidence 88888888543 3222222344677888888888887655542 23344555 77 7777663 4444431 34
Q ss_pred hcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccc
Q 048216 555 YQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAM 631 (654)
Q Consensus 555 ~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~ 631 (654)
..+ ++|++|+|++|.+.......++.+++|++|++++|.+. +.+|+|+.|.++...--..+|...+.+
T Consensus 178 ~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 178 DKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCC-ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 556 77777777777765544444667777777777754432 235566666655433223444444433
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=2.9e-15 Score=151.40 Aligned_cols=199 Identities=18% Similarity=0.111 Sum_probs=95.0
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccC-hhhhc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTA-DEFWK 476 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP-~~i~~ 476 (654)
.+++++|.+.++... ...+..|.++++|++|+|++| .+..+|...|+++++|++|++++|.+..+| ..+.+
T Consensus 27 ~~~l~~L~ls~n~l~----~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 27 PFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRC----EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CTTCCEEECTTCCCC----EECTTTTTTCTTCSEEECTTC----CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCCccEEECCCCccc----ccCHhHhccccCCcEEECCCC----cCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 445555555554432 122234455555555555555 455444432255555555555555554443 33555
Q ss_pred cccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCeEEEEeecCCCCCCcchhhh
Q 048216 477 VSKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTEDILGRLLVQILILSCLESLKLANESKMPRRSNIILAEY 555 (654)
Q Consensus 477 L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~L~l~~~~~~lp~~~~~~~ 555 (654)
+++|++|++++ . ....++ ..++++++|++|++++|....+ .+|. ++.
T Consensus 99 l~~L~~L~l~~---n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------~l~~---~~~ 146 (276)
T 2z62_A 99 LSSLQKLVAVE---T-NLASLENFPIGHLKTLKELNVAHNLIQSF-------------------------KLPE---YFS 146 (276)
T ss_dssp CTTCCEEECTT---S-CCCCSTTCCCTTCTTCCEEECCSSCCCCC-------------------------CCCG---GGG
T ss_pred CccccEEECCC---C-CccccCchhcccCCCCCEEECcCCcccee-------------------------cCch---hhc
Confidence 55555555322 1 111111 1344445555555544432221 1455 556
Q ss_pred cCCCCccEEEEEeeccCCCCccccccCcccc----eEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEc-Ccc
Q 048216 556 QFPPSLTHLSFSNIELMDDPMPALEKLPVLQ----VLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMG-IRA 630 (654)
Q Consensus 556 ~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~----~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~-~~~ 630 (654)
.+ ++|++|+|++|.+.......+..+++|+ .|++++|... .+........+|+.|+++++ .+..++.. ...
T Consensus 147 ~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~--~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~ 222 (276)
T 2z62_A 147 NL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLKELALDTN-QLKSVPDGIFDR 222 (276)
T ss_dssp GC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC--EECTTSSCSCCEEEEECCSS-CCSCCCTTTTTT
T ss_pred cC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc--ccCccccCCCcccEEECCCC-ceeecCHhHhcc
Confidence 66 6666666666665444434444444444 5555533321 12211222335666666653 45555443 245
Q ss_pred ccccceeeee
Q 048216 631 MPKLECLIIN 640 (654)
Q Consensus 631 ~p~L~~L~i~ 640 (654)
+++|+.|+++
T Consensus 223 l~~L~~L~l~ 232 (276)
T 2z62_A 223 LTSLQKIWLH 232 (276)
T ss_dssp CCSCCEEECC
T ss_pred cccccEEEcc
Confidence 6666666666
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.58 E-value=1.4e-14 Score=157.21 Aligned_cols=199 Identities=18% Similarity=0.106 Sum_probs=125.7
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+++|++|.+.++.... . + .+..+++|++|+|++| .+..+| + +.+++|++|++++|.+..+| ++++
T Consensus 41 l~~L~~L~Ls~n~l~~----~-~-~l~~l~~L~~L~Ls~n----~l~~~~--~-~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD----M-T-GIEKLTGLTKLICTSN----NITTLD--L-SQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp HTTCCEEECCSSCCCC----C-T-TGGGCTTCSEEECCSS----CCSCCC--C-TTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred cCCCCEEEccCCCccc----C-h-hhcccCCCCEEEccCC----cCCeEc--c-ccCCCCCEEECcCCCCceee--cCCC
Confidence 8999999999987652 2 2 5889999999999999 899987 6 99999999999999999986 8999
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec--CCCCCCcchhh
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK--MPRRSNIILAE 554 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~--~~~lp~~~~~~ 554 (654)
++|++|++++ . ....++ ++++++|++|++++|....++ +..++ +| .|+++++ .+.++ +
T Consensus 106 ~~L~~L~L~~---N-~l~~l~--~~~l~~L~~L~l~~N~l~~l~-------l~~l~-~L~~L~l~~n~~~~~~~-----~ 166 (457)
T 3bz5_A 106 TKLTYLNCDT---N-KLTKLD--VSQNPLLTYLNCARNTLTEID-------VSHNT-QLTELDCHLNKKITKLD-----V 166 (457)
T ss_dssp TTCCEEECCS---S-CCSCCC--CTTCTTCCEEECTTSCCSCCC-------CTTCT-TCCEEECTTCSCCCCCC-----C
T ss_pred CcCCEEECCC---C-cCCeec--CCCCCcCCEEECCCCccceec-------cccCC-cCCEEECCCCCcccccc-----c
Confidence 9999999754 2 222333 778888888888887654441 33344 56 6666543 12222 2
Q ss_pred hcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCcccccc
Q 048216 555 YQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKL 634 (654)
Q Consensus 555 ~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L 634 (654)
..+ ++|++|++++|.+.. ++ ++.+++|+.|++++|...+. ....+++|+.|++++ ..+..+| .+.+++|
T Consensus 167 ~~l-~~L~~L~ls~n~l~~--l~-l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~-N~l~~ip--~~~l~~L 235 (457)
T 3bz5_A 167 TPQ-TQLTTLDCSFNKITE--LD-VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSS-NKLTEID--VTPLTQL 235 (457)
T ss_dssp TTC-TTCCEEECCSSCCCC--CC-CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCS-SCCSCCC--CTTCTTC
T ss_pred ccC-CcCCEEECCCCccce--ec-cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcC-CcccccC--ccccCCC
Confidence 344 555555555555433 22 44455555555553333221 123344444444444 2333333 2334444
Q ss_pred ceeeeec
Q 048216 635 ECLIINP 641 (654)
Q Consensus 635 ~~L~i~~ 641 (654)
+.|++++
T Consensus 236 ~~L~l~~ 242 (457)
T 3bz5_A 236 TYFDCSV 242 (457)
T ss_dssp SEEECCS
T ss_pred CEEEeeC
Confidence 4444443
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.58 E-value=4.7e-15 Score=165.12 Aligned_cols=163 Identities=18% Similarity=0.135 Sum_probs=120.7
Q ss_pred ccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCcccccc
Q 048216 391 FGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHT 470 (654)
Q Consensus 391 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~l 470 (654)
..+|..+.+++++|.+.++... ...+..|.++++|++|+|++| .+..+|...|+++++|++|++++|.+..+
T Consensus 18 ~~ip~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 18 TSIPSGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSS----RINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp SSCCSCCCTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred ccccccCCCCccEEECcCCccC----ccChhhhhcCCcccEEECCCC----CcCccChhhccccccCCEEECCCCccCcc
Confidence 3455555789999999998864 344567899999999999999 88887754449999999999999999998
Q ss_pred Chh-hhccccccceeccccccccCCc-ccchhcCCCCCCCeEEEeccC-CcccchhhhcccccCCCCCe-EEEEeec-CC
Q 048216 471 ADE-FWKVSKLRYLNFGAITLPAHPG-KYCNSLENLNFISALHHCYCT-EDILGRLLVQILILSCLESL-KLANESK-MP 545 (654)
Q Consensus 471 P~~-i~~L~~L~~L~l~~l~~l~~~~-~l~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~ 545 (654)
|.. ++++++|++|++++ ..... ..|..++++++|++|++++|. ...++ ...+..++ +| .|+++++ +.
T Consensus 90 ~~~~~~~l~~L~~L~Ls~---n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~l~-~L~~L~L~~n~l~ 161 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMG---NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR----RIDFAGLT-SLNELEIKALSLR 161 (549)
T ss_dssp CHHHHTTCTTCCEEECTT---CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC----TTTTTTCC-EEEEEEEEETTCC
T ss_pred CHHHhccCCCCcEEECCC---CcccccchhhhhhccCCccEEECCCCccccccC----Hhhhhccc-ccCeeeccCCccc
Confidence 876 99999999999754 22111 356789999999999999986 34442 23455666 78 8888763 22
Q ss_pred -CCCCcchhhh------------------------cCCCCccEEEEEeeccCC
Q 048216 546 -RRSNIILAEY------------------------QFPPSLTHLSFSNIELMD 573 (654)
Q Consensus 546 -~lp~~~~~~~------------------------~lp~~L~~L~L~~~~l~~ 573 (654)
..|. ++. .+ ++|++|++++|.+..
T Consensus 162 ~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 162 NYQSQ---SLKSIRDIHHLTLHLSESAFLLEIFADIL-SSVRYLELRDTNLAR 210 (549)
T ss_dssp EECTT---TTTTCSEEEEEEEECSBSTTHHHHHHHST-TTBSEEEEESCBCTT
T ss_pred ccChh---hhhccccCceEecccCcccccchhhHhhc-ccccEEEccCCcccc
Confidence 2344 333 35 677777777776544
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=3.8e-15 Score=163.11 Aligned_cols=221 Identities=15% Similarity=0.054 Sum_probs=160.1
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+++|++|.+.++... ...+..|..+++|++|+|++| .+...++ + +.+++|++|+|++|.+..+|..
T Consensus 33 ~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~~---- 98 (487)
T 3oja_A 33 AWNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSN----VLYETLD-L-ESLSTLRTLDLNNNYVQELLVG---- 98 (487)
T ss_dssp GGGCCEEECCSSCCC----CCCGGGGTTCTTCCEEECTTS----CCEEEEE-C-TTCTTCCEEECCSSEEEEEEEC----
T ss_pred CCCccEEEeeCCcCC----CCCHHHHhCCCCCCEEEeeCC----CCCCCcc-c-ccCCCCCEEEecCCcCCCCCCC----
Confidence 458999999888764 245667888999999999999 7776655 5 8899999999999988877743
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCC-CCCcchhh
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPR-RSNIILAE 554 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~-lp~~~~~~ 554 (654)
++|++|++++ . ....++. ..+++|+.|++++|....+ ....+..++ +| .|+++++ +.. .|. ++
T Consensus 99 ~~L~~L~L~~---N-~l~~~~~--~~l~~L~~L~L~~N~l~~~----~~~~~~~l~-~L~~L~Ls~N~l~~~~~~---~l 164 (487)
T 3oja_A 99 PSIETLHAAN---N-NISRVSC--SRGQGKKNIYLANNKITML----RDLDEGCRS-RVQYLDLKLNEIDTVNFA---EL 164 (487)
T ss_dssp TTCCEEECCS---S-CCCCEEE--CCCSSCEEEECCSSCCCSG----GGBCGGGGS-SEEEEECTTSCCCEEEGG---GG
T ss_pred CCcCEEECcC---C-cCCCCCc--cccCCCCEEECCCCCCCCC----CchhhcCCC-CCCEEECCCCCCCCcChH---HH
Confidence 7888888644 2 2222332 2467899999998876655 234455567 89 9999874 333 454 55
Q ss_pred h-cCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccc
Q 048216 555 Y-QFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPK 633 (654)
Q Consensus 555 ~-~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~ 633 (654)
. .+ ++|++|+|++|.+.. ++....+++|+.|+|++|... .++.....+++|+.|++++ +.+..+|...+.+++
T Consensus 165 ~~~l-~~L~~L~Ls~N~l~~--~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~ 238 (487)
T 3oja_A 165 AASS-DTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQN 238 (487)
T ss_dssp GGGT-TTCCEEECTTSCCCE--EECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTT
T ss_pred hhhC-CcccEEecCCCcccc--ccccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecC-CcCcccchhhccCCC
Confidence 4 67 899999999998743 355667899999999966543 3433455678999999998 567888777778899
Q ss_pred cceeeeecCcCC-ccccccc
Q 048216 634 LECLIINPCAHL-KGFLNSF 652 (654)
Q Consensus 634 L~~L~i~~C~~L-~~lP~~l 652 (654)
|+.|++.+|+-. ..+|..+
T Consensus 239 L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHH
Confidence 999999988654 2455443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=2e-15 Score=165.30 Aligned_cols=92 Identities=18% Similarity=0.079 Sum_probs=38.9
Q ss_pred hhcCCCCccEEEEEeeccCCCCccccc-cCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCcccc
Q 048216 554 EYQFPPSLTHLSFSNIELMDDPMPALE-KLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMP 632 (654)
Q Consensus 554 ~~~lp~~L~~L~L~~~~l~~~~l~~l~-~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p 632 (654)
+..+ ++|++|+|++|.+....+..+. .+++|+.|+|++|...+ + .....+++|+.|++++ +.+..++...+.++
T Consensus 140 ~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~--~-~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~ 214 (487)
T 3oja_A 140 EGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--V-KGQVVFAKLKTLDLSS-NKLAFMGPEFQSAA 214 (487)
T ss_dssp GGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--E-ECCCCCTTCCEEECCS-SCCCEECGGGGGGT
T ss_pred hcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc--c-cccccCCCCCEEECCC-CCCCCCCHhHcCCC
Confidence 3344 4555555555544333333332 34555555554333211 1 1112244555555544 23444444444445
Q ss_pred ccceeeeecCcCCcccccc
Q 048216 633 KLECLIINPCAHLKGFLNS 651 (654)
Q Consensus 633 ~L~~L~i~~C~~L~~lP~~ 651 (654)
+|+.|++++| ++..+|..
T Consensus 215 ~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 215 GVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp TCSEEECTTS-CCCEECTT
T ss_pred CccEEEecCC-cCcccchh
Confidence 5555555443 34444443
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.56 E-value=1.7e-14 Score=164.91 Aligned_cols=179 Identities=14% Similarity=0.059 Sum_probs=129.9
Q ss_pred ccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCcccccc
Q 048216 391 FGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHT 470 (654)
Q Consensus 391 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~l 470 (654)
..+|..+.+++++|.+.++... ...+..|.++++|++|+|++| .+..++...|+++++|++|++++|.+..+
T Consensus 17 ~~ip~~~~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 17 TQVPDDLPTNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFN----TISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp SSCCSCSCTTCSEEECCSSCCC----CCCGGGGGGGTTCSEEECCSS----CCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred cccccccCCCCcEEECCCCCCC----CcCHHHHhCCCcCcEEECCCC----ccCccCHHHHhcccCcCEEECCCCccCcc
Confidence 3455555789999999998764 355677999999999999999 78877555459999999999999999999
Q ss_pred Ch-hhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCC
Q 048216 471 AD-EFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRR 547 (654)
Q Consensus 471 P~-~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~l 547 (654)
|. .++++++|++|++++ .+.....|..++++++|++|++++|..... ....+..++ +| .|+++++ +..+
T Consensus 89 ~~~~~~~l~~L~~L~L~~---n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~-~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMS---NSIQKIKNNPFVKQKNLITLDLSHNGLSST----KLGTQVQLE-NLQELLLSNNKIQAL 160 (680)
T ss_dssp CTTTTTTCTTCSEEECCS---SCCCCCCSCTTTTCTTCCEEECCSSCCSCC----CCCSSSCCT-TCCEEECCSSCCCCB
T ss_pred ChhhhccCCCCCEEECCC---CccCccChhHccccCCCCEEECCCCccccc----Cchhhcccc-cCCEEEccCCccccc
Confidence 97 599999999999654 322222346789999999999999876554 334556677 88 8888764 4444
Q ss_pred CCcchhhh--cCCCCccEEEEEeeccCCCCccccccCcccceE
Q 048216 548 SNIILAEY--QFPPSLTHLSFSNIELMDDPMPALEKLPVLQVL 588 (654)
Q Consensus 548 p~~~~~~~--~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L 588 (654)
+.. .+. .. ++|++|++++|.+.......+..+++|+.|
T Consensus 161 ~~~--~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 161 KSE--ELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp CHH--HHGGGTT-CEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CHH--Hhhcccc-ccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 431 222 34 678888888887655444444444443333
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.56 E-value=8.2e-15 Score=165.80 Aligned_cols=107 Identities=19% Similarity=0.110 Sum_probs=55.5
Q ss_pred ccCceeEEEEecCCCCcccc-ccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCC--CC--------
Q 048216 375 LRENVKRFTAHEKLNDFGFL-DDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLN--IP-------- 441 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~--lp-------- 441 (654)
.|..+++|.+. ++....++ ..+ +++|++|.+.++... .+.+..|.++++|++|+|++|.+ +|
T Consensus 50 lp~~~~~LdLs-~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 50 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCcCCCEEEee-CCCCCCCCHHHHhCCCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 34566777776 33333333 334 667777777666543 23344556666666666666611 00
Q ss_pred ----------CCCcCChhHHhcCCCceEEcCCCccccc--cChhhhccccccceecc
Q 048216 442 ----------SLKSLPSSLLSSLLNLYTLDMPFSYIDH--TADEFWKVSKLRYLNFG 486 (654)
Q Consensus 442 ----------~i~~lP~~if~~L~~L~~L~L~~~~l~~--lP~~i~~L~~L~~L~l~ 486 (654)
.+..+|...|++|++|++|++++|.+.. +|..++++++|++|+++
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 4444444323555555555555554432 34555555556655553
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=3.8e-14 Score=158.84 Aligned_cols=217 Identities=14% Similarity=0.028 Sum_probs=111.6
Q ss_pred CceeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCC
Q 048216 377 ENVKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLN 456 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~ 456 (654)
.+++.|.+. ++....++. .+++|++|.+.++.... + +. .+++|++|+|++| .+..+|. .+.+
T Consensus 61 ~~L~~L~L~-~N~l~~lp~-~l~~L~~L~Ls~N~l~~----l-p~---~l~~L~~L~Ls~N----~l~~l~~----~l~~ 122 (622)
T 3g06_A 61 AHITTLVIP-DNNLTSLPA-LPPELRTLEVSGNQLTS----L-PV---LPPGLLELSIFSN----PLTHLPA----LPSG 122 (622)
T ss_dssp TTCSEEEEC-SCCCSCCCC-CCTTCCEEEECSCCCSC----C-CC---CCTTCCEEEECSC----CCCCCCC----CCTT
T ss_pred CCCcEEEec-CCCCCCCCC-cCCCCCEEEcCCCcCCc----C-CC---CCCCCCEEECcCC----cCCCCCC----CCCC
Confidence 456666666 433332332 35666666666665431 1 11 5566666666666 6666664 3566
Q ss_pred ceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe
Q 048216 457 LYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL 536 (654)
Q Consensus 457 L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L 536 (654)
|++|++++|.+..+|.. +++|++|++++ . ....+|. .+.+|+.|++++|....+| ..++ +|
T Consensus 123 L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~---N-~l~~l~~---~~~~L~~L~L~~N~l~~l~--------~~~~-~L 183 (622)
T 3g06_A 123 LCKLWIFGNQLTSLPVL---PPGLQELSVSD---N-QLASLPA---LPSELCKLWAYNNQLTSLP--------MLPS-GL 183 (622)
T ss_dssp CCEEECCSSCCSCCCCC---CTTCCEEECCS---S-CCSCCCC---CCTTCCEEECCSSCCSCCC--------CCCT-TC
T ss_pred cCEEECCCCCCCcCCCC---CCCCCEEECcC---C-cCCCcCC---ccCCCCEEECCCCCCCCCc--------ccCC-CC
Confidence 66777777766666653 36666776543 2 1222332 2345566666655443332 1123 66
Q ss_pred -EEEEee-cCCCCCCcchhhh----------------cCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCC
Q 048216 537 -KLANES-KMPRRSNIILAEY----------------QFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGR 598 (654)
Q Consensus 537 -~L~l~~-~~~~lp~~~~~~~----------------~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~ 598 (654)
.|++++ .+..+|. .+. ..+++|++|+|++|.++. ++ ..+++|+.|+|++|...
T Consensus 184 ~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~--lp--~~l~~L~~L~Ls~N~L~-- 254 (622)
T 3g06_A 184 QELSVSDNQLASLPT---LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS--LP--VLPSELKELMVSGNRLT-- 254 (622)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC--CC--CCCTTCCEEECCSSCCS--
T ss_pred cEEECCCCCCCCCCC---ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc--CC--CCCCcCcEEECCCCCCC--
Confidence 666665 2334443 110 011445555555554432 22 33455566666543322
Q ss_pred eeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCc
Q 048216 599 KLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCA 643 (654)
Q Consensus 599 ~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~ 643 (654)
.++. .+++|+.|+++++ ++..+|...+.+++|+.|++++|+
T Consensus 255 ~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 255 SLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred cCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 1211 4556666666663 455665555566666666666664
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=2e-14 Score=145.00 Aligned_cols=205 Identities=17% Similarity=0.109 Sum_probs=131.2
Q ss_pred hcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcC
Q 048216 423 CKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLE 502 (654)
Q Consensus 423 ~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~ 502 (654)
...+++|+.|+++++ .+..++. + +.+++|++|++++|.+..+| .+.++++|++|++++ .......+..+.
T Consensus 37 ~~~l~~L~~L~l~~~----~i~~~~~-l-~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~---n~l~~~~~~~~~ 106 (272)
T 3rfs_A 37 QNELNSIDQIIANNS----DIKSVQG-I-QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG---NQLQSLPNGVFD 106 (272)
T ss_dssp HHHHTTCCEEECTTS----CCCCCTT-G-GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT---SCCCCCCTTTTT
T ss_pred cccccceeeeeeCCC----Ccccccc-c-ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC---CccCccChhHhc
Confidence 456777788888888 6777663 5 77888888888888777764 677788888888543 222222234467
Q ss_pred CCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccc
Q 048216 503 NLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALE 580 (654)
Q Consensus 503 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~ 580 (654)
++++|++|++++|....++ ...+..++ +| .|+++++ +..+|.. ++..+ ++|++|++++|.+.......++
T Consensus 107 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~-~L~~L~L~~n~l~~~~~~--~~~~l-~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLP----DGVFDKLT-NLTYLNLAHNQLQSLPKG--VFDKL-TNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp TCTTCCEEECTTSCCCCCC----TTTTTTCT-TCCEEECCSSCCCCCCTT--TTTTC-TTCCEEECCSSCCCCCCTTTTT
T ss_pred CCcCCCEEECCCCcCCccC----HHHhccCC-CCCEEECCCCccCccCHH--HhccC-ccCCEEECCCCCcCccCHHHhc
Confidence 7788888888877665542 23355566 77 8888763 4455541 34567 7888888888877654444567
Q ss_pred cCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcccccccC
Q 048216 581 KLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSFG 653 (654)
Q Consensus 581 ~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l~ 653 (654)
.+++|++|++++|...+ ........+++|+.|++.+++ + .+.+|+|+.|.+..+.--..+|..++
T Consensus 179 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~-~------~~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNP-W------DCTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp TCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSC-B------CCCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCC-c------cccCcHHHHHHHHHHhCCCcccCccc
Confidence 78888888887554432 111123457778888887743 1 14467777777776544344666554
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=5.7e-14 Score=157.41 Aligned_cols=223 Identities=18% Similarity=0.042 Sum_probs=148.2
Q ss_pred ceeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCc
Q 048216 378 NVKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNL 457 (654)
Q Consensus 378 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L 457 (654)
.++.+.+. ++....++..+.++|++|.+.++.... ++. .+++|++|+|++| .+..+|. .+++|
T Consensus 41 ~l~~L~ls-~n~L~~lp~~l~~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N----~l~~lp~----~l~~L 103 (622)
T 3g06_A 41 GNAVLNVG-ESGLTTLPDCLPAHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGN----QLTSLPV----LPPGL 103 (622)
T ss_dssp CCCEEECC-SSCCSCCCSCCCTTCSEEEECSCCCSC-----CCC---CCTTCCEEEECSC----CCSCCCC----CCTTC
T ss_pred CCcEEEec-CCCcCccChhhCCCCcEEEecCCCCCC-----CCC---cCCCCCEEEcCCC----cCCcCCC----CCCCC
Confidence 46677777 554445665557889999988887642 122 5788899999998 7888885 57888
Q ss_pred eEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-
Q 048216 458 YTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL- 536 (654)
Q Consensus 458 ~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L- 536 (654)
++|++++|.+..+|. .+.+|++|++++ . ....+|.. +++|++|++++|....+| . .++ +|
T Consensus 104 ~~L~Ls~N~l~~l~~---~l~~L~~L~L~~---N-~l~~lp~~---l~~L~~L~Ls~N~l~~l~---~-----~~~-~L~ 164 (622)
T 3g06_A 104 LELSIFSNPLTHLPA---LPSGLCKLWIFG---N-QLTSLPVL---PPGLQELSVSDNQLASLP---A-----LPS-ELC 164 (622)
T ss_dssp CEEEECSCCCCCCCC---CCTTCCEEECCS---S-CCSCCCCC---CTTCCEEECCSSCCSCCC---C-----CCT-TCC
T ss_pred CEEECcCCcCCCCCC---CCCCcCEEECCC---C-CCCcCCCC---CCCCCEEECcCCcCCCcC---C-----ccC-CCC
Confidence 999999998888887 677888888643 2 23345543 478889999888655443 1 234 78
Q ss_pred EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCC--ccccc--------------cCcccceEEEeecccCCCe
Q 048216 537 KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDP--MPALE--------------KLPVLQVLKLKQNSYSGRK 599 (654)
Q Consensus 537 ~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~--l~~l~--------------~l~~L~~L~L~~~~~~~~~ 599 (654)
.|++++ .+..+|. . + ++|+.|+|++|.+...+ ++.+. .+++|+.|+|++|....
T Consensus 165 ~L~L~~N~l~~l~~---~---~-~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-- 235 (622)
T 3g06_A 165 KLWAYNNQLTSLPM---L---P-SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-- 235 (622)
T ss_dssp EEECCSSCCSCCCC---C---C-TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC--
T ss_pred EEECCCCCCCCCcc---c---C-CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc--
Confidence 888876 4565655 2 2 34444444444433211 11111 23778888888654433
Q ss_pred eEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecCcCCcccccccC
Q 048216 600 LACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSFG 653 (654)
Q Consensus 600 l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l~ 653 (654)
++ ..+++|+.|+++++ ++..+|. .+++|+.|++++| +++.+|..++
T Consensus 236 lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 236 LP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp CC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred CC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHh
Confidence 22 45788999999884 6777765 5788999999887 7788887654
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=3.6e-14 Score=142.95 Aligned_cols=196 Identities=20% Similarity=0.123 Sum_probs=136.1
Q ss_pred CceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhh-hcc
Q 048216 399 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEF-WKV 477 (654)
Q Consensus 399 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i-~~L 477 (654)
.+.+++.+.++.... + +..+ .+.|+.|+|++| .+..+|...|+++++|++|++++|.+..+|..+ .++
T Consensus 16 ~~~~~l~~~~~~l~~----i-p~~~--~~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA----I-PSNI--PADTKKLDLQSN----KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp TTTTEEECTTSCCSS----C-CSCC--CTTCSEEECCSS----CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCEEEccCCCCCc----c-CCCC--CCCCCEEECcCC----CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 346777777665532 2 2212 256889999999 888888754489999999999999888888764 788
Q ss_pred ccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhh
Q 048216 478 SKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAE 554 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~ 554 (654)
++|++|++++ . ....++ ..+.++++|++|++++|....++ ...+..++ +| .|++++ .+..+|.. .+
T Consensus 85 ~~L~~L~l~~---n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~-~L~~L~Ls~n~l~~~~~~--~~ 153 (270)
T 2o6q_A 85 KNLETLWVTD---N-KLQALPIGVFDQLVNLAELRLDRNQLKSLP----PRVFDSLT-KLTYLSLGYNELQSLPKG--VF 153 (270)
T ss_dssp TTCCEEECCS---S-CCCCCCTTTTTTCSSCCEEECCSSCCCCCC----TTTTTTCT-TCCEEECCSSCCCCCCTT--TT
T ss_pred CCCCEEECCC---C-cCCcCCHhHcccccCCCEEECCCCccCeeC----HHHhCcCc-CCCEEECCCCcCCccCHh--Hc
Confidence 9999999643 2 223344 45678889999999888766552 33456666 88 888877 35566651 35
Q ss_pred hcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEE-cCCCCccccEEEEecCC
Q 048216 555 YQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLAC-SSDGFPKLKVLHLKSML 619 (654)
Q Consensus 555 ~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~-~~~~f~~L~~L~l~~~~ 619 (654)
..+ ++|++|+|++|.+.......+.++++|++|+|++|.... ++. ....+++|+.|++.+++
T Consensus 154 ~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 DKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR--VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSC
T ss_pred cCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc--CCHHHhccccCCCEEEecCCC
Confidence 677 888888888888766555567888888888888554332 221 23457788888887743
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=7.5e-15 Score=145.06 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=113.4
Q ss_pred eeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCcc-ccccCh-hhhccccccceeccccccccCCcccc-hhcCCC
Q 048216 428 FLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSY-IDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYC-NSLENL 504 (654)
Q Consensus 428 ~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~-l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l 504 (654)
.|++|+|++| .+..+|...|+++++|++|++++|. +..+|. .+.++++|++|+++ ++.....++ ..+.++
T Consensus 32 ~l~~L~l~~n----~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~---~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIET----HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR---NTRNLTYIDPDALKEL 104 (239)
T ss_dssp TCCEEEEESC----CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE---EETTCCEECTTSEECC
T ss_pred cccEEEEeCC----cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC---CCCCeeEcCHHHhCCC
Confidence 4555555555 5555555333555566666665553 555544 45555556655532 101222333 344555
Q ss_pred CCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec--CCCCCCcchhhhcCCCCcc-EEEEEeeccCCCCccccc
Q 048216 505 NFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK--MPRRSNIILAEYQFPPSLT-HLSFSNIELMDDPMPALE 580 (654)
Q Consensus 505 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~--~~~lp~~~~~~~~lp~~L~-~L~L~~~~l~~~~l~~l~ 580 (654)
++|++|++++|....+| .+..+..+. .| .|+++++ +..+|.. ++..+ ++|+ +|++++|.+...+...+.
T Consensus 105 ~~L~~L~l~~n~l~~lp---~~~~l~~L~-~L~~L~l~~N~~l~~i~~~--~~~~l-~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMFP---DLTKVYSTD-IFFILEITDNPYMTSIPVN--AFQGL-CNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp TTCCEEEEEEECCCSCC---CCTTCCBCC-SEEEEEEESCTTCCEECTT--TTTTT-BSSEEEEECCSCCCCEECTTTTT
T ss_pred CCCCEEeCCCCCCcccc---ccccccccc-cccEEECCCCcchhhcCcc--cccch-hcceeEEEcCCCCCcccCHhhcC
Confidence 66666666665554444 333444444 45 5666553 3344431 45667 8888 999998887533333333
Q ss_pred cCcccceEEEeecccCCCeeE-EcCCCC-ccccEEEEecCCCCcceeEcCccccccceeeeecCcCC
Q 048216 581 KLPVLQVLKLKQNSYSGRKLA-CSSDGF-PKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHL 645 (654)
Q Consensus 581 ~l~~L~~L~L~~~~~~~~~l~-~~~~~f-~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L 645 (654)
. ++|+.|++++|... ..++ .....+ ++|+.|++++ +.+..++.. .|++|+.|.+.+|..|
T Consensus 178 ~-~~L~~L~L~~n~~l-~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYL-TVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp T-CEEEEEECTTCTTC-CEECTTTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC---
T ss_pred C-CCCCEEEcCCCCCc-ccCCHHHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccCC
Confidence 4 78999999855212 2332 223456 8899999988 567776654 7899999999888654
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=3.7e-15 Score=153.55 Aligned_cols=200 Identities=20% Similarity=0.163 Sum_probs=137.5
Q ss_pred ccceeeEEecCCCCCCCCCC-cCChhHH-hcCCCceEEcCCCccccccChhhhcc-----ccccceeccccccccCCccc
Q 048216 425 MFKFLRVLNLGSLLNIPSLK-SLPSSLL-SSLLNLYTLDMPFSYIDHTADEFWKV-----SKLRYLNFGAITLPAHPGKY 497 (654)
Q Consensus 425 ~l~~Lr~L~L~~~~~lp~i~-~lP~~if-~~L~~L~~L~L~~~~l~~lP~~i~~L-----~~L~~L~l~~l~~l~~~~~l 497 (654)
++++|++|+|++| .+. .+|..+| +.+++|++|++++|.+..+|..++.+ ++|++|++++ .+.....
T Consensus 93 ~l~~L~~L~L~~n----~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~---N~l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENL----EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ---AHSLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEE----BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES---CSCCCCC
T ss_pred CcCCccEEEccCC----cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC---CCCccch
Confidence 6778888888888 565 5776653 67888888888888887778777777 7888888543 3222333
Q ss_pred chhcCCCCCCCeEEEeccCCcc-cchhhhcccc--cCCCCCe-EEEEeec-CCCCCCcc-hhhhcCCCCccEEEEEeecc
Q 048216 498 CNSLENLNFISALHHCYCTEDI-LGRLLVQILI--LSCLESL-KLANESK-MPRRSNII-LAEYQFPPSLTHLSFSNIEL 571 (654)
Q Consensus 498 ~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l--~~~~~~L-~L~l~~~-~~~lp~~~-~~~~~lp~~L~~L~L~~~~l 571 (654)
|..++++++|++|++++|.... .+ .+..+ ..++ +| .|+++++ +..+|... ..+..+ ++|++|+|++|.+
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERG---LISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSL 240 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHH---HHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCC
T ss_pred HHHhccCCCCCEEECCCCCcCcchH---HHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcC-CCCCEEECCCCcC
Confidence 4677888888888888875322 11 11222 4556 88 8888764 33322100 022467 8999999999987
Q ss_pred CCCC-ccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccccceeeeecC
Q 048216 572 MDDP-MPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKLECLIINPC 642 (654)
Q Consensus 572 ~~~~-l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C 642 (654)
.... .+.+..+++|++|+|++|... .++.. .+++|++|++++ ++++.+|. ...+++|+.|++.++
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~--~~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKG--LPAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCS--SCCSS--CCSEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTC
T ss_pred CcccchhhhhhcCCCCEEECCCCccC--hhhhh--ccCCceEEECCC-CCCCCChh-HhhCCCCCEEeccCC
Confidence 6544 355677899999999966553 33222 237999999998 57888765 778999999999886
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=3.6e-14 Score=144.45 Aligned_cols=194 Identities=16% Similarity=0.057 Sum_probs=114.4
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+++++++.+.++.... ++... .+.|++|+|++| .+..++...|.++++|++|++++|.+..+|.. +.+
T Consensus 9 l~~l~~l~~~~~~l~~----ip~~~---~~~l~~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA----LPPDL---PKDTTILHLSEN----LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTL 76 (290)
T ss_dssp STTCCEEECTTSCCSS----CCSCC---CTTCCEEECTTS----CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCC
T ss_pred cCCccEEECCCCCCCc----CCCCC---CCCCCEEEcCCC----cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCC
Confidence 4566667666655431 21111 246777777777 66666544347777777777777777776654 677
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhh
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEY 555 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~ 555 (654)
++|++|++++ . ....+|..+..+++|++|++++|....++ ...+..++ +| .|++++ .+..+|.. .+.
T Consensus 77 ~~L~~L~Ls~---N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~-~L~~L~L~~N~l~~~~~~--~~~ 145 (290)
T 1p9a_G 77 PVLGTLDLSH---N-QLQSLPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLG-ELQELYLKGNELKTLPPG--LLT 145 (290)
T ss_dssp TTCCEEECCS---S-CCSSCCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCT-TCCEEECTTSCCCCCCTT--TTT
T ss_pred CcCCEEECCC---C-cCCcCchhhccCCCCCEEECCCCcCcccC----HHHHcCCC-CCCEEECCCCCCCccChh--hcc
Confidence 7777777543 2 33456666677777777777777655542 23455555 66 777765 34445441 234
Q ss_pred cCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEec
Q 048216 556 QFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKS 617 (654)
Q Consensus 556 ~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~ 617 (654)
.+ ++|+.|+|++|+++..+...+..+++|++|+|++|... .++......++|+.|++.+
T Consensus 146 ~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 146 PT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp TC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCS
T ss_pred cc-cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCC
Confidence 56 67777777777665444444566777777777644432 2333333445666666665
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.53 E-value=6.5e-15 Score=152.11 Aligned_cols=235 Identities=13% Similarity=0.018 Sum_probs=108.6
Q ss_pred ceeEEEEecCCCCccc-cccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcC
Q 048216 378 NVKRFTAHEKLNDFGF-LDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSL 454 (654)
Q Consensus 378 ~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L 454 (654)
+++++.+. ++..... +..+ +++|++|.+.++.... .. .+..+++|++|+|++| .+..+| .+
T Consensus 35 ~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~--~~~~l~~L~~L~Ls~n----~l~~l~-----~~ 98 (317)
T 3o53_A 35 NVKELDLS-GNPLSQISAADLAPFTKLELLNLSSNVLYE----TL--DLESLSTLRTLDLNNN----YVQELL-----VG 98 (317)
T ss_dssp GCSEEECT-TSCCCCCCHHHHTTCTTCCEEECTTSCCEE----EE--EETTCTTCCEEECCSS----EEEEEE-----EC
T ss_pred CCCEEECc-CCccCcCCHHHhhCCCcCCEEECCCCcCCc----ch--hhhhcCCCCEEECcCC----cccccc-----CC
Confidence 45555555 3222222 2233 5556666655554421 11 1555556666666665 444333 23
Q ss_pred CCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccc-cCCC
Q 048216 455 LNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILI-LSCL 533 (654)
Q Consensus 455 ~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l-~~~~ 533 (654)
++|++|++++|.+..+|.. .+++|++|++++ .+.....+..+..+++|++|++++|.....+ ...+ ..++
T Consensus 99 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~---N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~ 169 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS--RGQGKKNIYLAN---NKITMLRDLDEGCRSRVQYLDLKLNEIDTVN----FAELAASSD 169 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC--CCSSCEEEECCS---SCCCSGGGBCTGGGSSEEEEECTTSCCCEEE----GGGGGGGTT
T ss_pred CCcCEEECCCCccCCcCcc--ccCCCCEEECCC---CCCCCccchhhhccCCCCEEECCCCCCCccc----HHHHhhccC
Confidence 5566666666655555432 245556665322 2111112334555556666666655444331 1222 1234
Q ss_pred CCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCcccc
Q 048216 534 ESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLK 611 (654)
Q Consensus 534 ~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~ 611 (654)
+| .|+++++ +..+|. . ..+ ++|++|+|++|.+.. ..+.+..+++|++|+|++|... .++.....+++|+
T Consensus 170 -~L~~L~L~~N~l~~~~~---~-~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~ 240 (317)
T 3o53_A 170 -TLEHLNLQYNFIYDVKG---Q-VVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLE 240 (317)
T ss_dssp -TCCEEECTTSCCCEEEC---C-CCC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCC
T ss_pred -cCCEEECCCCcCccccc---c-ccc-ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc--chhhHhhcCCCCC
Confidence 55 5665542 333332 1 224 556666666665432 2223555566666666543322 2333334455566
Q ss_pred EEEEecCCCCc--ceeEcCccccccceeeeecCcCCcc
Q 048216 612 VLHLKSMLWLE--EWTMGIRAMPKLECLIINPCAHLKG 647 (654)
Q Consensus 612 ~L~l~~~~~l~--~l~~~~~~~p~L~~L~i~~C~~L~~ 647 (654)
.|++++++ +. .++...+.+++|+.|.+.+|+.++.
T Consensus 241 ~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 241 HFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred EEEccCCC-ccCcCHHHHHhccccceEEECCCchhccC
Confidence 66665532 22 2222334455555555555444443
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=6.1e-14 Score=144.14 Aligned_cols=188 Identities=16% Similarity=0.164 Sum_probs=149.6
Q ss_pred cCceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhc
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSS 453 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~ 453 (654)
..+++++.+. +.....++ .+ +++|+.|.+.++.... . +. +..+++|++|+|++| .+..+| .+ ++
T Consensus 40 l~~L~~L~l~-~~~i~~l~-~~~~l~~L~~L~L~~n~i~~----~-~~-~~~l~~L~~L~L~~n----~l~~~~-~~-~~ 105 (308)
T 1h6u_A 40 LDGITTLSAF-GTGVTTIE-GVQYLNNLIGLELKDNQITD----L-AP-LKNLTKITELELSGN----PLKNVS-AI-AG 105 (308)
T ss_dssp HHTCCEEECT-TSCCCCCT-TGGGCTTCCEEECCSSCCCC----C-GG-GTTCCSCCEEECCSC----CCSCCG-GG-TT
T ss_pred cCCcCEEEee-CCCccCch-hhhccCCCCEEEccCCcCCC----C-hh-HccCCCCCEEEccCC----cCCCch-hh-cC
Confidence 4678999998 55544444 34 8999999999987642 2 23 899999999999999 888887 56 99
Q ss_pred CCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCC
Q 048216 454 LLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCL 533 (654)
Q Consensus 454 L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~ 533 (654)
+++|++|++++|.+..+|. +..+++|++|++++ . ....++. +.++++|+.|++++|....++ .+..++
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~---n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~------~l~~l~ 173 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL---N-QITNISP-LAGLTNLQYLSIGNAQVSDLT------PLANLS 173 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS---S-CCCCCGG-GGGCTTCCEEECCSSCCCCCG------GGTTCT
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC---C-ccCcCcc-ccCCCCccEEEccCCcCCCCh------hhcCCC
Confidence 9999999999999999875 99999999999654 2 2233343 889999999999999776664 266777
Q ss_pred CCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCC
Q 048216 534 ESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSG 597 (654)
Q Consensus 534 ~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~ 597 (654)
+| .|+++++ +..+| .+..+ ++|++|+|++|.+.. .+.+..+++|+.|++++|....
T Consensus 174 -~L~~L~l~~n~l~~~~----~l~~l-~~L~~L~L~~N~l~~--~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 174 -KLTTLKADDNKISDIS----PLASL-PNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -TCCEEECCSSCCCCCG----GGGGC-TTCCEEECTTSCCCB--CGGGTTCTTCCEEEEEEEEEEC
T ss_pred -CCCEEECCCCccCcCh----hhcCC-CCCCEEEccCCccCc--cccccCCCCCCEEEccCCeeec
Confidence 99 9999874 55666 46778 999999999998753 3358999999999999776544
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=1.1e-13 Score=139.73 Aligned_cols=204 Identities=17% Similarity=0.075 Sum_probs=153.9
Q ss_pred ccCceeEEEEecCCCCccccc-cc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHH
Q 048216 375 LRENVKRFTAHEKLNDFGFLD-DF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLL 451 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if 451 (654)
.+.+++++.+. ++....++. .+ +++|++|.+.++... .+.+..|.++++|++|+|++| .+..+|...|
T Consensus 26 l~~~l~~L~ls-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~ 96 (276)
T 2z62_A 26 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGN----PIQSLALGAF 96 (276)
T ss_dssp SCTTCCEEECT-TCCCCEECTTTTTTCTTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTC----CCCEECTTTT
T ss_pred CCCCccEEECC-CCcccccCHhHhccccCCcEEECCCCcCC----ccCHHHccCCcCCCEEECCCC----ccCccChhhh
Confidence 45679999998 554443443 45 899999999998764 345567899999999999999 8888775544
Q ss_pred hcCCCceEEcCCCccccccCh-hhhccccccceeccccccccC-CcccchhcCCCCCCCeEEEeccCCcccchhhhcccc
Q 048216 452 SSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAH-PGKYCNSLENLNFISALHHCYCTEDILGRLLVQILI 529 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~-~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 529 (654)
+++++|++|++++|.+..++. .++++++|++|++++ ... ...+|..+.++++|++|++++|....++. ..+..+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l 172 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH---NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVL 172 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS---SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHH
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcC---CccceecCchhhccCCCCCEEECCCCCCCcCCH-HHhhhh
Confidence 999999999999999888876 689999999999654 221 12368899999999999999997665531 133444
Q ss_pred cCCCCCe--EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccC
Q 048216 530 LSCLESL--KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYS 596 (654)
Q Consensus 530 ~~~~~~L--~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~ 596 (654)
..++ .| .|++++ .+..+|. ..... .+|+.|+|++|.+...+...+.++++|+.|+|++|.+.
T Consensus 173 ~~L~-~l~l~L~ls~n~l~~~~~---~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 173 HQMP-LLNLSLDLSLNPMNFIQP---GAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HTCT-TCCEEEECCSSCCCEECT---TSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhcc-ccceeeecCCCcccccCc---cccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 4555 55 677766 4455665 55555 68999999999987665556788999999999966543
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=1.1e-15 Score=159.08 Aligned_cols=181 Identities=19% Similarity=0.152 Sum_probs=82.6
Q ss_pred ccceeeEEecCCCCCCCCCCc--CChhHHhcCCCceEEcCCCcccc-ccChhhhccccccceeccccccccCCcccchhc
Q 048216 425 MFKFLRVLNLGSLLNIPSLKS--LPSSLLSSLLNLYTLDMPFSYID-HTADEFWKVSKLRYLNFGAITLPAHPGKYCNSL 501 (654)
Q Consensus 425 ~l~~Lr~L~L~~~~~lp~i~~--lP~~if~~L~~L~~L~L~~~~l~-~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l 501 (654)
++++|++|+|++| .+.. +|..+ +.+++|++|++++|.+. ..|..++++++|++|++++...+ ....++..+
T Consensus 91 ~~~~L~~L~L~~~----~l~~~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l-~~~~l~~~~ 164 (336)
T 2ast_B 91 SPFRVQHMDLSNS----VIEVSTLHGIL-SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF-SEFALQTLL 164 (336)
T ss_dssp CCBCCCEEECTTC----EECHHHHHHHH-TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC-CHHHHHHHH
T ss_pred cCCCCCEEEccCC----CcCHHHHHHHH-hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC-CHHHHHHHH
Confidence 4555555555555 3331 44434 55555555555555443 34444555555555553221111 011234444
Q ss_pred CCCCCCCeEEEecc-CCcccchhhhcccccCCCCCe-EEEEeecC-----CCCCCcchhhhcCCCCccEEEEEeec-cCC
Q 048216 502 ENLNFISALHHCYC-TEDILGRLLVQILILSCLESL-KLANESKM-----PRRSNIILAEYQFPPSLTHLSFSNIE-LMD 573 (654)
Q Consensus 502 ~~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~-----~~lp~~~~~~~~lp~~L~~L~L~~~~-l~~ 573 (654)
.++++|++|++++| ...... ....+..++.+| .|+++++. ..+|. .+..+ ++|++|+|++|. ++.
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~---~~~~~-~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQKSDLST---LVRRC-PNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHHHHHH---HHHHC-TTCSEEECTTCTTCCG
T ss_pred hcCCCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCCHHHHHH---HHhhC-CCCCEEeCCCCCcCCH
Confidence 45555555555554 322110 011111121144 55554431 12333 44456 666666666666 444
Q ss_pred CCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecC
Q 048216 574 DPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSM 618 (654)
Q Consensus 574 ~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~ 618 (654)
..++.+.++++|++|++++|.............+++|+.|++++|
T Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 455556666666666666442111110011234666666666665
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=2.2e-13 Score=138.58 Aligned_cols=195 Identities=16% Similarity=0.050 Sum_probs=151.6
Q ss_pred CceeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCC
Q 048216 377 ENVKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLN 456 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~ 456 (654)
.+.+.+.+. +.....++..+.++++.|.+.++... ...+..|.++++|++|+|++| .+..+|.. +.+++
T Consensus 10 ~~l~~l~~~-~~~l~~ip~~~~~~l~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~--~~l~~ 78 (290)
T 1p9a_G 10 ASHLEVNCD-KRNLTALPPDLPKDTTILHLSENLLY----TFSLATLMPYTRLTQLNLDRA----ELTKLQVD--GTLPV 78 (290)
T ss_dssp TTCCEEECT-TSCCSSCCSCCCTTCCEEECTTSCCS----EEEGGGGTTCTTCCEEECTTS----CCCEEECC--SCCTT
T ss_pred CCccEEECC-CCCCCcCCCCCCCCCCEEEcCCCcCC----ccCHHHhhcCCCCCEEECCCC----ccCcccCC--CCCCc
Confidence 456677776 55555566656789999999988764 355677899999999999999 88888764 78999
Q ss_pred ceEEcCCCccccccChhhhccccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCC
Q 048216 457 LYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTEDILGRLLVQILILSCLES 535 (654)
Q Consensus 457 L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~ 535 (654)
|++|++++|.+..+|..+..+++|++|++++ . ....++ ..+.++++|++|++++|....+| ...+..++ +
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~---N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~-~ 149 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSF---N-RLTSLPLGALRGLGELQELYLKGNELKTLP----PGLLTPTP-K 149 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCS---S-CCCCCCSSTTTTCTTCCEEECTTSCCCCCC----TTTTTTCT-T
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCC---C-cCcccCHHHHcCCCCCCEEECCCCCCCccC----hhhccccc-C
Confidence 9999999999999999999999999999654 2 233444 66889999999999999776663 34456677 8
Q ss_pred e-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeeccc
Q 048216 536 L-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSY 595 (654)
Q Consensus 536 L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~ 595 (654)
| .|++++ .+..+|.. .+..+ ++|++|+|++|.+. ..+..+..+++|+.|+|++|.+
T Consensus 150 L~~L~L~~N~l~~l~~~--~~~~l-~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAG--LLNGL-ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCEEECTTSCCSCCCTT--TTTTC-TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCEEECCCCcCCccCHH--HhcCc-CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 9 999987 46677761 34568 99999999999975 4445567788999999997654
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=5.2e-15 Score=153.94 Aligned_cols=207 Identities=16% Similarity=0.125 Sum_probs=152.7
Q ss_pred Hhhhccc--ceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccc--cChhhhccccccceeccccccccCCc
Q 048216 420 EKICKMF--KFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDH--TADEFWKVSKLRYLNFGAITLPAHPG 495 (654)
Q Consensus 420 ~~~~~~l--~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~--lP~~i~~L~~L~~L~l~~l~~l~~~~ 495 (654)
+..+..+ +.+++|++++| .+...+..+ .++++|++|++++|.+.. +|..+.++++|++|+++ ++....
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n----~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~---~~~l~~ 132 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRS----FMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE---GLRLSD 132 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTC----EECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT---TCBCCH
T ss_pred HHHHHhhhhccceEEEcCCc----cccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc---CcccCH
Confidence 3556666 88999999999 778777778 899999999999997764 88889999999999964 443444
Q ss_pred ccchhcCCCCCCCeEEEeccC-CcccchhhhcccccCCCCCe-EEEEeec-C-CC--CCCcchhhhcCCC-CccEEEEEe
Q 048216 496 KYCNSLENLNFISALHHCYCT-EDILGRLLVQILILSCLESL-KLANESK-M-PR--RSNIILAEYQFPP-SLTHLSFSN 568 (654)
Q Consensus 496 ~l~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~-~~--lp~~~~~~~~lp~-~L~~L~L~~ 568 (654)
..+..++++++|++|++++|. ..... ....+..++ +| .|+++++ . .. +|. .+..+ + +|++|+|++
T Consensus 133 ~~~~~l~~~~~L~~L~L~~~~~l~~~~---l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~---~~~~l-~~~L~~L~l~~ 204 (336)
T 2ast_B 133 PIVNTLAKNSNLVRLNLSGCSGFSEFA---LQTLLSSCS-RLDELNLSWCFDFTEKHVQV---AVAHV-SETITQLNLSG 204 (336)
T ss_dssp HHHHHHTTCTTCSEEECTTCBSCCHHH---HHHHHHHCT-TCCEEECCCCTTCCHHHHHH---HHHHS-CTTCCEEECCS
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCHHH---HHHHHhcCC-CCCEEcCCCCCCcChHHHHH---HHHhc-ccCCCEEEeCC
Confidence 677888999999999999983 33210 122355567 99 9999876 2 21 555 67788 7 999999999
Q ss_pred ec--cCCCCc-cccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCccee-EcCccccccceeeeecC
Q 048216 569 IE--LMDDPM-PALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWT-MGIRAMPKLECLIINPC 642 (654)
Q Consensus 569 ~~--l~~~~l-~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~-~~~~~~p~L~~L~i~~C 642 (654)
|. ++...+ ..+.++++|++|++++|.............+++|++|++++|..+..-. ...+.+|+|+.|++.+|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 94 432233 3467899999999996653332222344567999999999986443221 13456899999999888
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=6.2e-14 Score=138.45 Aligned_cols=201 Identities=11% Similarity=0.055 Sum_probs=142.1
Q ss_pred ccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCC-CCcCChhHHhcCCCceEEcCCC-cccccc
Q 048216 393 FLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPS-LKSLPSSLLSSLLNLYTLDMPF-SYIDHT 470 (654)
Q Consensus 393 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~-i~~lP~~if~~L~~L~~L~L~~-~~l~~l 470 (654)
+|. +.++++.|.+.++... .+.+..|.++++|++|++++| . +..+|...|+++++|++|++++ |.+..+
T Consensus 26 ip~-~~~~l~~L~l~~n~l~----~i~~~~~~~l~~L~~L~l~~n----~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 26 IPS-LPPSTQTLKLIETHLR----TIPSHAFSNLPNISRIYVSID----VTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CCC-CCTTCCEEEEESCCCS----EECTTTTTTCTTCCEEEEECC----SSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred cCC-CCCcccEEEEeCCcce----EECHHHccCCCCCcEEeCCCC----CCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 444 5568888888887764 344557888888899999888 5 8888875558888899999888 688887
Q ss_pred Ch-hhhccccccceeccccccccCCcccchhcCCCCCCC---eEEEecc-CCcccchhhhcccccCCCCCe--EEEEee-
Q 048216 471 AD-EFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFIS---ALHHCYC-TEDILGRLLVQILILSCLESL--KLANES- 542 (654)
Q Consensus 471 P~-~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~l~~l~~~~~~L--~L~l~~- 542 (654)
|. .+.++++|++|++++ . ....+|. +..+++|+ +|++++| ....++ ...+..++ +| .|++++
T Consensus 97 ~~~~f~~l~~L~~L~l~~---n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~----~~~~~~l~-~L~~~L~l~~n 166 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFN---T-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP----VNAFQGLC-NETLTLKLYNN 166 (239)
T ss_dssp CTTSEECCTTCCEEEEEE---E-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC----TTTTTTTB-SSEEEEECCSC
T ss_pred CHHHhCCCCCCCEEeCCC---C-CCccccc-cccccccccccEEECCCCcchhhcC----cccccchh-cceeEEEcCCC
Confidence 74 577888888888654 2 2233555 67777777 8888888 655553 23344455 55 466655
Q ss_pred cCCCCCCcchhhhcCCCCccEEEEEeec-cCCCCccccccC-cccceEEEeecccCCCeeEEcCCCCccccEEEEecCCC
Q 048216 543 KMPRRSNIILAEYQFPPSLTHLSFSNIE-LMDDPMPALEKL-PVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLW 620 (654)
Q Consensus 543 ~~~~lp~~~~~~~~lp~~L~~L~L~~~~-l~~~~l~~l~~l-~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~ 620 (654)
.+..+|. ..... ++|++|+|++|. +.......+..+ ++|+.|++++|.... ++ ...|++|+.|++.++..
T Consensus 167 ~l~~i~~---~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~--l~--~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 167 GFTSVQG---YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LP--SKGLEHLKELIARNTWT 238 (239)
T ss_dssp CCCEECT---TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC--CC--CTTCTTCSEEECTTC--
T ss_pred CCcccCH---hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc--CC--hhHhccCceeeccCccC
Confidence 3556776 55556 789999999994 765555567888 999999999655432 22 23799999999987643
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=2.5e-13 Score=138.31 Aligned_cols=167 Identities=19% Similarity=0.190 Sum_probs=116.7
Q ss_pred hcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcC
Q 048216 423 CKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLE 502 (654)
Q Consensus 423 ~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~ 502 (654)
+..+++|+.|++++| .+..+|. + +.+++|++|++++|.+..+|. +.++++|++|++++ . ....+ ..+.
T Consensus 42 ~~~l~~L~~L~l~~~----~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~---n-~l~~~-~~l~ 109 (291)
T 1h6t_A 42 QNELNSIDQIIANNS----DIKSVQG-I-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE---N-KVKDL-SSLK 109 (291)
T ss_dssp HHHHHTCCEEECTTS----CCCCCTT-G-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS---S-CCCCG-GGGT
T ss_pred hhhcCcccEEEccCC----CcccChh-H-hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC---C-cCCCC-hhhc
Confidence 345677777777777 6777754 5 777777777777777777766 77777777777543 2 12223 3377
Q ss_pred CCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccc
Q 048216 503 NLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALE 580 (654)
Q Consensus 503 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~ 580 (654)
++++|++|++++|....++ .+..++ +| .|+++++ +..++ .+..+ ++|+.|+|++|.+.. ++.+.
T Consensus 110 ~l~~L~~L~L~~n~i~~~~------~l~~l~-~L~~L~l~~n~l~~~~----~l~~l-~~L~~L~L~~N~l~~--~~~l~ 175 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDIN------GLVHLP-QLESLYLGNNKITDIT----VLSRL-TKLDTLSLEDNQISD--IVPLA 175 (291)
T ss_dssp TCTTCCEEECTTSCCCCCG------GGGGCT-TCCEEECCSSCCCCCG----GGGGC-TTCSEEECCSSCCCC--CGGGT
T ss_pred cCCCCCEEECCCCcCCCCh------hhcCCC-CCCEEEccCCcCCcch----hhccC-CCCCEEEccCCcccc--chhhc
Confidence 7777788877777554442 344555 77 7887763 44553 67888 999999999998744 33489
Q ss_pred cCcccceEEEeecccCCCeeEEcCCCCccccEEEEecC
Q 048216 581 KLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSM 618 (654)
Q Consensus 581 ~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~ 618 (654)
.+++|++|++++|.... +. ....+++|+.|+++++
T Consensus 176 ~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp TCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEE
T ss_pred CCCccCEEECCCCcCCC--Ch-hhccCCCCCEEECcCC
Confidence 99999999999665432 22 3567899999999984
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=8.2e-13 Score=143.17 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=52.4
Q ss_pred CceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccc
Q 048216 399 SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVS 478 (654)
Q Consensus 399 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~ 478 (654)
++|++|.+.++.... ++ .+.++++|++|++++| .+..+|..+ .+|++|++++|.+..+| .+++++
T Consensus 131 ~~L~~L~L~~n~l~~-----lp-~~~~l~~L~~L~l~~N----~l~~lp~~~----~~L~~L~L~~n~l~~l~-~~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-----LP-ELQNSSFLKIIDVDNN----SLKKLPDLP----PSLEFIAAGNNQLEELP-ELQNLP 195 (454)
T ss_dssp TTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSS----CCSCCCCCC----TTCCEEECCSSCCSSCC-CCTTCT
T ss_pred CCCCEEECcCCCCCC-----Cc-ccCCCCCCCEEECCCC----cCcccCCCc----ccccEEECcCCcCCcCc-cccCCC
Confidence 456666655554431 11 2555555666666655 444444322 24444444444444444 344444
Q ss_pred cccceeccc-----------------cccccCCcccchhcCCCCCCCeEEEeccCCccc
Q 048216 479 KLRYLNFGA-----------------ITLPAHPGKYCNSLENLNFISALHHCYCTEDIL 520 (654)
Q Consensus 479 ~L~~L~l~~-----------------l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 520 (654)
+|++|++++ +++. ....+| .++++++|++|++++|....+
T Consensus 196 ~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 196 FLTAIYADNNSLKKLPDLPLSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSC
T ss_pred CCCEEECCCCcCCcCCCCcCcccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCCcc
Confidence 444444332 1112 223455 377778888888877755444
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=1.4e-13 Score=141.81 Aligned_cols=198 Identities=19% Similarity=0.108 Sum_probs=135.9
Q ss_pred cCceeEEEEecCCCCCCChhhhHhh-hcccceeeEEecCCCCCCCCCCcCChhHHhcC-----CCceEEcCCCccccccC
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKI-CKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSL-----LNLYTLDMPFSYIDHTA 471 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~-~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L-----~~L~~L~L~~~~l~~lP 471 (654)
+++|+.|.+.++.... ..+... +..+++|++|+|++| .+..+|..+ +.+ ++|++|++++|.+..+|
T Consensus 94 l~~L~~L~L~~n~l~~---~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 94 ISGLQELTLENLEVTG---TAPPPLLEATGPDLNILNLRNV----SWATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp TSCCCEEEEEEEBCBS---CCCCCSSSCCSCCCSEEEEESC----BCSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred cCCccEEEccCCcccc---hhHHHHHHhcCCCccEEEccCC----CCcchhHHH-HHHHHhhcCCCcEEEeeCCCCccch
Confidence 6788888888876531 122222 278889999999999 788778777 887 89999999999888876
Q ss_pred -hhhhccccccceeccccccccCCc--ccchhc--CCCCCCCeEEEeccCCcccchhhhc-ccccCCCCCe-EEEEeec-
Q 048216 472 -DEFWKVSKLRYLNFGAITLPAHPG--KYCNSL--ENLNFISALHHCYCTEDILGRLLVQ-ILILSCLESL-KLANESK- 543 (654)
Q Consensus 472 -~~i~~L~~L~~L~l~~l~~l~~~~--~l~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~~~~~L-~L~l~~~- 543 (654)
..++++++|++|++++ .+..+ .++..+ .++++|++|++++|....++. .. ..+..++ +| .|+++++
T Consensus 166 ~~~~~~l~~L~~L~Ls~---N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~~~l~-~L~~L~Ls~N~ 239 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSD---NPELGERGLISALCPLKFPTLQVLALRNAGMETPSG--VCSALAAARV-QLQGLDLSHNS 239 (312)
T ss_dssp TTTCCCCSSCCEEECCS---CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH--HHHHHHHTTC-CCSEEECTTSC
T ss_pred HHHhccCCCCCEEECCC---CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH--HHHHHHhcCC-CCCEEECCCCc
Confidence 6788999999999654 21111 234555 788899999999887654431 11 1223456 88 8998874
Q ss_pred CCCCC-CcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecC
Q 048216 544 MPRRS-NIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSM 618 (654)
Q Consensus 544 ~~~lp-~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~ 618 (654)
+...+ .. .+..+ ++|++|+|++|.++ ..+..+. ++|++|+|++|...+. +. ...+++|++|++++.
T Consensus 240 l~~~~~~~--~~~~l-~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 240 LRDAAGAP--SCDWP-SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCSSCCCS--CCCCC-TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTC
T ss_pred CCcccchh--hhhhc-CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCC
Confidence 44322 10 34456 89999999999875 3333343 8899999996655433 22 567888888888873
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.41 E-value=2.5e-12 Score=139.35 Aligned_cols=201 Identities=19% Similarity=0.202 Sum_probs=144.9
Q ss_pred ccCceeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhccc-ceeeEEecCCCCCCCCCCcCChhHHhc
Q 048216 375 LRENVKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMF-KFLRVLNLGSLLNIPSLKSLPSSLLSS 453 (654)
Q Consensus 375 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~lp~i~~lP~~if~~ 453 (654)
.+.+++++.+. ++....++. ..++|+.|.+.++.... +..+ ++|++|++++| .+..+| ++ ++
T Consensus 89 ~~~~L~~L~l~-~n~l~~lp~-~~~~L~~L~l~~n~l~~---------l~~~~~~L~~L~L~~n----~l~~lp-~~-~~ 151 (454)
T 1jl5_A 89 LPPHLESLVAS-CNSLTELPE-LPQSLKSLLVDNNNLKA---------LSDLPPLLEYLGVSNN----QLEKLP-EL-QN 151 (454)
T ss_dssp CCTTCSEEECC-SSCCSSCCC-CCTTCCEEECCSSCCSC---------CCSCCTTCCEEECCSS----CCSSCC-CC-TT
T ss_pred CcCCCCEEEcc-CCcCCcccc-ccCCCcEEECCCCccCc---------ccCCCCCCCEEECcCC----CCCCCc-cc-CC
Confidence 45678899888 544443432 26889999998876542 1122 68999999999 888899 57 99
Q ss_pred CCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCC
Q 048216 454 LLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCL 533 (654)
Q Consensus 454 L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~ 533 (654)
+++|++|++++|.+..+|..+ .+|++|++++ . ....+| .++++++|++|++++|....+| ..+
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~---n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~---------~~~ 214 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN---N-QLEELP-ELQNLPFLTAIYADNNSLKKLP---------DLP 214 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCS---S-CCSSCC-CCTTCTTCCEEECCSSCCSSCC---------CCC
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcC---C-cCCcCc-cccCCCCCCEEECCCCcCCcCC---------CCc
Confidence 999999999999998888754 4889999654 3 233456 6899999999999998655543 122
Q ss_pred CCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCcccc
Q 048216 534 ESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLK 611 (654)
Q Consensus 534 ~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~ 611 (654)
.+| .|+++++ +..+|. +..+ ++|++|++++|.+.. ++. .+++|+.|++++|...+ ++ ..+++|+
T Consensus 215 ~~L~~L~l~~n~l~~lp~----~~~l-~~L~~L~l~~N~l~~--l~~--~~~~L~~L~l~~N~l~~--l~---~~~~~L~ 280 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPE----LQNL-PFLTTIYADNNLLKT--LPD--LPPSLEALNVRDNYLTD--LP---ELPQSLT 280 (454)
T ss_dssp TTCCEEECCSSCCSSCCC----CTTC-TTCCEEECCSSCCSS--CCS--CCTTCCEEECCSSCCSC--CC---CCCTTCC
T ss_pred CcccEEECcCCcCCcccc----cCCC-CCCCEEECCCCcCCc--ccc--cccccCEEECCCCcccc--cC---cccCcCC
Confidence 389 9999874 557774 5678 999999999998753 332 34899999999665433 21 2357888
Q ss_pred EEEEecCCCCcce
Q 048216 612 VLHLKSMLWLEEW 624 (654)
Q Consensus 612 ~L~l~~~~~l~~l 624 (654)
.|+++++ .+..+
T Consensus 281 ~L~ls~N-~l~~l 292 (454)
T 1jl5_A 281 FLDVSEN-IFSGL 292 (454)
T ss_dssp EEECCSS-CCSEE
T ss_pred EEECcCC-ccCcc
Confidence 8888874 34443
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=4.2e-13 Score=128.26 Aligned_cols=149 Identities=14% Similarity=0.127 Sum_probs=103.1
Q ss_pred cccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCC
Q 048216 424 KMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLEN 503 (654)
Q Consensus 424 ~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~ 503 (654)
..+++|+.|++++| .+..+| .+ ..+++|++|++++|.+..+| .+..+++|++|++++ .......+..+++
T Consensus 41 ~~l~~L~~L~l~~n----~i~~l~-~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~---n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANI----NVTDLT-GI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG---KDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESS----CCSCCT-TG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEEC---TTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCC----CccChH-HH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeEC---CccCcccChhhcC
Confidence 56777888888888 777887 56 88888888888888666664 677888888888543 3223335667778
Q ss_pred CCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec--CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccc
Q 048216 504 LNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK--MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALE 580 (654)
Q Consensus 504 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~--~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~ 580 (654)
+++|++|++++|..... .+..+..++ +| .|+++++ +..+| .+..+ ++|++|++++|.+.. ++.+.
T Consensus 111 l~~L~~L~Ls~n~i~~~----~~~~l~~l~-~L~~L~L~~n~~i~~~~----~l~~l-~~L~~L~l~~n~i~~--~~~l~ 178 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDS----ILTKINTLP-KVNSIDLSYNGAITDIM----PLKTL-PELKSLNIQFDGVHD--YRGIE 178 (197)
T ss_dssp CTTCCEEECCSSBCBGG----GHHHHTTCS-SCCEEECCSCTBCCCCG----GGGGC-SSCCEEECTTBCCCC--CTTGG
T ss_pred CCCCCEEEecCCccCcH----hHHHHhhCC-CCCEEEccCCCCccccH----hhcCC-CCCCEEECCCCCCcC--hHHhc
Confidence 88888888888765442 234455556 77 7777664 44555 46677 788888888887643 44677
Q ss_pred cCcccceEEEeecc
Q 048216 581 KLPVLQVLKLKQNS 594 (654)
Q Consensus 581 ~l~~L~~L~L~~~~ 594 (654)
.+++|++|++++|.
T Consensus 179 ~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 179 DFPKLNQLYAFSQT 192 (197)
T ss_dssp GCSSCCEEEECBC-
T ss_pred cCCCCCEEEeeCcc
Confidence 78888888887544
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=1.3e-14 Score=154.27 Aligned_cols=232 Identities=16% Similarity=0.057 Sum_probs=120.4
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCc----CChhH------HhcCCCceEEcCCCccc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKS----LPSSL------LSSLLNLYTLDMPFSYI 467 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~----lP~~i------f~~L~~L~~L~L~~~~l 467 (654)
+++|++|.+.++.........+...+..+++|++|+|++| .+.. +|..+ |.++++|++|+|++|.+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~----~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI----FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC----CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc----ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 5666677666654431001112334556677777777766 3332 23332 24667777777777755
Q ss_pred cc-----cChhhhccccccceeccccccccC----CcccchhcCCC---------CCCCeEEEeccCCcccchhhhcccc
Q 048216 468 DH-----TADEFWKVSKLRYLNFGAITLPAH----PGKYCNSLENL---------NFISALHHCYCTEDILGRLLVQILI 529 (654)
Q Consensus 468 ~~-----lP~~i~~L~~L~~L~l~~l~~l~~----~~~l~~~l~~l---------~~L~~L~l~~~~~~~~~~~~~l~~l 529 (654)
.. +|..+.++++|++|++++ +.. ...++..+..+ ++|++|++++|.............+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~---n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHN---NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCS---SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcC---CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 54 566666777777777433 211 11233333334 6777777776654311100011234
Q ss_pred cCCCCCe-EEEEeec-CC------CCCCcchhhhcCCCCccEEEEEeeccC----CCCccccccCcccceEEEeecccCC
Q 048216 530 LSCLESL-KLANESK-MP------RRSNIILAEYQFPPSLTHLSFSNIELM----DDPMPALEKLPVLQVLKLKQNSYSG 597 (654)
Q Consensus 530 ~~~~~~L-~L~l~~~-~~------~lp~~~~~~~~lp~~L~~L~L~~~~l~----~~~l~~l~~l~~L~~L~L~~~~~~~ 597 (654)
..++ +| .|.++++ +. -.|. ++..+ ++|++|+|++|.+. ...+..+..+++|++|+|++|....
T Consensus 184 ~~~~-~L~~L~L~~n~l~~~g~~~l~~~---~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 184 QSHR-LLHTVKMVQNGIRPEGIEHLLLE---GLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHCT-TCCEEECCSSCCCHHHHHHHHHT---TGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HhCC-CcCEEECcCCCCCHhHHHHHHHH---HhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 4455 66 7777653 22 1233 44556 77777777777653 1122345667777777777444321
Q ss_pred Ce---eEEcC--CCCccccEEEEecCCCCcc-----eeEcC-ccccccceeeeecC
Q 048216 598 RK---LACSS--DGFPKLKVLHLKSMLWLEE-----WTMGI-RAMPKLECLIINPC 642 (654)
Q Consensus 598 ~~---l~~~~--~~f~~L~~L~l~~~~~l~~-----l~~~~-~~~p~L~~L~i~~C 642 (654)
.. ++... +.+++|+.|+++++ .+.. ++... ..+|+|+.|++++|
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 10 11111 23667777777764 3444 43332 34677777777776
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=3.7e-13 Score=150.56 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=120.8
Q ss_pred hcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcC
Q 048216 423 CKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLE 502 (654)
Q Consensus 423 ~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~ 502 (654)
+..+++|+.|++++| .+..+| .+ +.|++|+.|+|++|.+..+|. +.+|++|++|+++. . ....+ ..+.
T Consensus 39 ~~~L~~L~~L~l~~n----~i~~l~-~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~---N-~l~~l-~~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNS----DIKSVQ-GI-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE---N-KIKDL-SSLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTC----CCCCCT-TG-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS---S-CCCCC-TTST
T ss_pred hhcCCCCCEEECcCC----CCCCCh-HH-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC---C-CCCCC-hhhc
Confidence 456777788888888 777776 46 788888888888887777776 77888888888544 2 22223 3677
Q ss_pred CCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccc
Q 048216 503 NLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALE 580 (654)
Q Consensus 503 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~ 580 (654)
.+++|+.|++++|....++ .+..++ +| .|.++++ +..++ .+..+ ++|+.|+|++|.+.. ++++.
T Consensus 107 ~l~~L~~L~Ls~N~l~~l~------~l~~l~-~L~~L~Ls~N~l~~l~----~l~~l-~~L~~L~Ls~N~l~~--~~~l~ 172 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISDIN------GLVHLP-QLESLYLGNNKITDIT----VLSRL-TKLDTLSLEDNQISD--IVPLA 172 (605)
T ss_dssp TCTTCCEEECTTSCCCCCG------GGGGCT-TCSEEECCSSCCCCCG----GGGSC-TTCSEEECCSSCCCC--CGGGT
T ss_pred cCCCCCEEEecCCCCCCCc------cccCCC-ccCEEECCCCccCCch----hhccc-CCCCEEECcCCcCCC--chhhc
Confidence 7888888888877655543 355566 78 8888764 44553 67788 999999999998743 33389
Q ss_pred cCcccceEEEeecccCCCeeEEcCCCCccccEEEEecC
Q 048216 581 KLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSM 618 (654)
Q Consensus 581 ~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~ 618 (654)
.+++|+.|+|++|.... + .....+++|+.|+++++
T Consensus 173 ~l~~L~~L~Ls~N~i~~--l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISD--L-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp TCTTCCEEECCSSCCCB--C-GGGTTCTTCSEEECCSE
T ss_pred cCCCCCEEECcCCCCCC--C-hHHccCCCCCEEEccCC
Confidence 99999999999665433 2 23567899999999985
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=7.1e-13 Score=138.73 Aligned_cols=230 Identities=13% Similarity=0.059 Sum_probs=152.2
Q ss_pred CCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCC-CcCChhHHhcCCCceE-EcCCC
Q 048216 387 KLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSL-KSLPSSLLSSLLNLYT-LDMPF 464 (654)
Q Consensus 387 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i-~~lP~~if~~L~~L~~-L~L~~ 464 (654)
+.....+|..+.++++.|.+.++... .+.+..|.++++|++|+|++| .+ +.+|...|.+|.+|+. +.+.+
T Consensus 18 ~~~Lt~iP~~l~~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N----~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 18 ESKVTEIPSDLPRNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQN----DVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp STTCCSCCTTCCTTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECC----TTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CCCCCccCcCcCCCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCC----CCCCccChhHhhcchhhhhhhcccC
Confidence 33344466656678888888887764 355567888889999999888 55 5577766688888765 44555
Q ss_pred ccccccC-hhhhccccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccC-CcccchhhhcccccCCCCCe-EEEE
Q 048216 465 SYIDHTA-DEFWKVSKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCT-EDILGRLLVQILILSCLESL-KLAN 540 (654)
Q Consensus 465 ~~l~~lP-~~i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~~~~~L-~L~l 540 (654)
|++..+| ..+..|++|++|++++ . ....++ .......++..|++..+. ...++ ...+...+..+ .|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~---n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~----~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISN---T-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE----RNSFVGLSFESVILWL 161 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEE---E-CCSSCCCCTTCCBSSCEEEEEESCTTCCEEC----TTSSTTSBSSCEEEEC
T ss_pred CcccccCchhhhhccccccccccc---c-ccccCCchhhcccchhhhhhhcccccccccc----ccchhhcchhhhhhcc
Confidence 6888874 5578888888888644 2 122222 233445566777776542 33332 12333333256 7888
Q ss_pred ee-cCCCCCCcchhhhcCCCCccEEEEEee-ccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecC
Q 048216 541 ES-KMPRRSNIILAEYQFPPSLTHLSFSNI-ELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSM 618 (654)
Q Consensus 541 ~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~-~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~ 618 (654)
++ .+..+|. ..... .+|++|.+.++ .+...+...+..+++|+.|+|++|... .+ ....|.+|+.|.+.++
T Consensus 162 ~~N~i~~i~~---~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~--~l--p~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 162 NKNGIQEIHN---SAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--SL--PSYGLENLKKLRARST 233 (350)
T ss_dssp CSSCCCEECT---TSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC--CC--CSSSCTTCCEEECTTC
T ss_pred ccccccCCCh---hhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC--cc--ChhhhccchHhhhccC
Confidence 76 4566776 55556 77888888754 444334445788999999999865432 22 2356888999998888
Q ss_pred CCCcceeEcCccccccceeeeec
Q 048216 619 LWLEEWTMGIRAMPKLECLIINP 641 (654)
Q Consensus 619 ~~l~~l~~~~~~~p~L~~L~i~~ 641 (654)
.+++.+|. ...+++|+.+++.+
T Consensus 234 ~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 234 YNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTCCCCCC-TTTCCSCCEEECSC
T ss_pred CCcCcCCC-chhCcChhhCcCCC
Confidence 88888874 56688888888743
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=4.8e-13 Score=140.07 Aligned_cols=223 Identities=12% Similarity=0.041 Sum_probs=156.0
Q ss_pred eEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccc-cccCh-hhhcccc
Q 048216 402 HSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYI-DHTAD-EFWKVSK 479 (654)
Q Consensus 402 r~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l-~~lP~-~i~~L~~ 479 (654)
+++.+.++... .++..+ .++++.|+|++| .|+.+|...|++|++|++|+|++|.+ +.+|. .+.+|++
T Consensus 12 ~~v~C~~~~Lt----~iP~~l---~~~l~~L~Ls~N----~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 12 RVFLCQESKVT----EIPSDL---PRNAIELRFVLT----KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp TEEEEESTTCC----SCCTTC---CTTCSEEEEESC----CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CEEEecCCCCC----ccCcCc---CCCCCEEEccCC----cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 45666555443 122222 257899999999 89999987669999999999999976 55765 4678888
Q ss_pred ccceeccccccccCCccc-chhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee--cCCCCCCcchhhh
Q 048216 480 LRYLNFGAITLPAHPGKY-CNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES--KMPRRSNIILAEY 555 (654)
Q Consensus 480 L~~L~l~~l~~l~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~--~~~~lp~~~~~~~ 555 (654)
|+++.... ......+ |..+.++++|++|++++|....++ .. ...... ++ .|.+.+ .+..+|.. .+.
T Consensus 81 l~~~l~~~---~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~---~~-~~~~~~-~l~~l~l~~~~~i~~l~~~--~f~ 150 (350)
T 4ay9_X 81 LHEIRIEK---ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP---DV-HKIHSL-QKVLLDIQDNINIHTIERN--SFV 150 (350)
T ss_dssp CCEEEEEE---ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC---CC-TTCCBS-SCEEEEEESCTTCCEECTT--SST
T ss_pred hhhhhccc---CCcccccCchhhhhccccccccccccccccCC---ch-hhcccc-hhhhhhhcccccccccccc--chh
Confidence 87755321 1133444 567899999999999999776664 22 222233 56 777765 34455541 344
Q ss_pred cCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEE-cCCCCccccEEEEecCCCCcceeEcCcccccc
Q 048216 556 QFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLAC-SSDGFPKLKVLHLKSMLWLEEWTMGIRAMPKL 634 (654)
Q Consensus 556 ~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~-~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~L 634 (654)
.++..++.|+|++|.+... .+.....++|+.|.+.++.. ...++. ....+++|++|++++ ++++.+|. +.|.+|
T Consensus 151 ~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~-l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L 225 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNN-LEELPNDVFHGASGPVILDISR-TRIHSLPS--YGLENL 225 (350)
T ss_dssp TSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTT-CCCCCTTTTTTEECCSEEECTT-SCCCCCCS--SSCTTC
T ss_pred hcchhhhhhccccccccCC-ChhhccccchhHHhhccCCc-ccCCCHHHhccCcccchhhcCC-CCcCccCh--hhhccc
Confidence 4546799999999987533 33344667899999984333 233332 236788999999998 57888764 568999
Q ss_pred ceeeeecCcCCccccc
Q 048216 635 ECLIINPCAHLKGFLN 650 (654)
Q Consensus 635 ~~L~i~~C~~L~~lP~ 650 (654)
+.|.+.+|.+++.+|.
T Consensus 226 ~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 226 KKLRARSTYNLKKLPT 241 (350)
T ss_dssp CEEECTTCTTCCCCCC
T ss_pred hHhhhccCCCcCcCCC
Confidence 9999999999999995
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=2.1e-12 Score=128.41 Aligned_cols=173 Identities=19% Similarity=0.167 Sum_probs=91.0
Q ss_pred eEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceE
Q 048216 380 KRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYT 459 (654)
Q Consensus 380 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~ 459 (654)
+++.+. +.....++..+.++++.|.+.++... ...+..|.++++|++|+|++| .+..++...|.++++|++
T Consensus 17 ~~l~~~-~~~l~~~p~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 17 KEVDCQ-GKSLDSVPSGIPADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYN----QLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp TEEECT-TCCCSSCCSCCCTTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTS----CCCCCCTTTTTTCTTCCE
T ss_pred eEEecC-CCCccccCCCCCCCCCEEEccCCCcC----ccCHhHhcCcccCCEEECCCC----cCCccCHhHhccCCcCCE
Confidence 345554 33333344444556666666665543 133345566666666666666 555555543366666666
Q ss_pred EcCCCccccccCh-hhhccccccceeccccccccCCcccch-hcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCeE
Q 048216 460 LDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYCN-SLENLNFISALHHCYCTEDILGRLLVQILILSCLESLK 537 (654)
Q Consensus 460 L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~ 537 (654)
|++++|.+..+|. .+..+++|++|++++ . ....++. .+.++++|++|++++|....
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~---N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------ 145 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGG---N-QLKSLPSGVFDRLTKLKELRLNTNQLQS------------------ 145 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCS---S-CCCCCCTTTTTTCTTCCEEECCSSCCCC------------------
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCC---C-cCCCcChhHhccCCcccEEECcCCcCCc------------------
Confidence 6666666665553 345566666666432 1 1122332 23455555555555553322
Q ss_pred EEEeecCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeeccc
Q 048216 538 LANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSY 595 (654)
Q Consensus 538 L~l~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~ 595 (654)
+|.. .+..+ ++|++|+|++|.+.......+..+++|++|+|++|.+
T Consensus 146 ---------~~~~--~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 146 ---------IPAG--AFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ---------CCTT--TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ---------cCHH--HcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 2220 34455 6666666666665544444556666666666665443
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=8.6e-13 Score=135.65 Aligned_cols=198 Identities=15% Similarity=0.039 Sum_probs=111.9
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhh--cccceeeEEecCCCCCCCCCCc-CC----hhHHhcCCCceEEcCCCcccccc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKIC--KMFKFLRVLNLGSLLNIPSLKS-LP----SSLLSSLLNLYTLDMPFSYIDHT 470 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~~lp~i~~-lP----~~if~~L~~L~~L~L~~~~l~~l 470 (654)
.++|+.|.+.++.... ..+..+ ..+++|++|+|++| .+.. .| ..+ ..+++|++|++++|.+..+
T Consensus 90 ~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n----~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~ 160 (310)
T 4glp_A 90 YSRLKELTLEDLKITG----TMPPLPLEATGLALSSLRLRNV----SWATGRSWLAELQQ-WLKPGLKVLSIAQAHSPAF 160 (310)
T ss_dssp HSCCCEEEEESCCCBS----CCCCCSSSCCCBCCSSCEEESC----CCSSTTSSHHHHHT-TBCSCCCEEEEECCSSCCC
T ss_pred cCceeEEEeeCCEecc----chhhhhhhccCCCCCEEEeecc----cccchhhhhHHHHh-hhccCCCEEEeeCCCcchh
Confidence 5567777777766431 222333 66777777777777 5553 22 233 5577777777777766665
Q ss_pred C-hhhhccccccceeccccccccCCcccc--hhcCCCCCCCeEEEeccCCcccchhhhccc-ccCCCCCe-EEEEeec-C
Q 048216 471 A-DEFWKVSKLRYLNFGAITLPAHPGKYC--NSLENLNFISALHHCYCTEDILGRLLVQIL-ILSCLESL-KLANESK-M 544 (654)
Q Consensus 471 P-~~i~~L~~L~~L~l~~l~~l~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-l~~~~~~L-~L~l~~~-~ 544 (654)
| ..++++++|++|++++ .++.....++ ..++++++|++|++++|....++. .... +..++ +| .|+++++ +
T Consensus 161 ~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~~l~-~L~~L~Ls~N~l 236 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSD-NPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG--VCAALAAAGV-QPHSLDLSHNSL 236 (310)
T ss_dssp CTTSCCCCTTCCEEECCS-CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH--HHHHHHHHTC-CCSSEECTTSCC
T ss_pred hHHHhccCCCCCEEECCC-CCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH--HHHHHHhcCC-CCCEEECCCCCC
Confidence 4 4567777777777543 0010001122 223567777777777776544431 1111 23345 67 7777653 3
Q ss_pred CCC-CCcchhhhcC--CCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEec
Q 048216 545 PRR-SNIILAEYQF--PPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKS 617 (654)
Q Consensus 545 ~~l-p~~~~~~~~l--p~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~ 617 (654)
... |. .+..+ +++|++|+|++|.++ ..+..+ .++|++|+|++|...+- +. ...+++|+.|++++
T Consensus 237 ~~~~p~---~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~L~Ls~N~l~~~--~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 237 RATVNP---SAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRVLDLSSNRLNRA--PQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp CCCCCS---CCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSCEECCSCCCCSC--CC-TTSCCCCSCEECSS
T ss_pred Cccchh---hHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCEEECCCCcCCCC--ch-hhhCCCccEEECcC
Confidence 333 54 34433 157888888887765 222223 26788888876554432 11 35567777777776
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=2.3e-13 Score=139.90 Aligned_cols=225 Identities=16% Similarity=0.154 Sum_probs=156.7
Q ss_pred cCceeEEEEecCCCCCCChhhhHh--hhcccceeeEEecCCCCCCCCCC-cCChhHH-hcCCCceEEcCCCccccc-cC-
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEK--ICKMFKFLRVLNLGSLLNIPSLK-SLPSSLL-SSLLNLYTLDMPFSYIDH-TA- 471 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~--~~~~l~~Lr~L~L~~~~~lp~i~-~lP~~if-~~L~~L~~L~L~~~~l~~-lP- 471 (654)
...++.+.+...... ...... .+..++.|+.|+|++| .+. ..|..+| +++.+|++|++++|.+.. .|
T Consensus 63 ~~~l~~l~l~~~~~~---~~~~~~~~~~~~~~~L~~L~l~~n----~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 135 (310)
T 4glp_A 63 ALRVRRLTVGAAQVP---AQLLVGALRVLAYSRLKELTLEDL----KITGTMPPLPLEATGLALSSLRLRNVSWATGRSW 135 (310)
T ss_dssp SCCCCEEEECSCCCB---HHHHHHHHHHHHHSCCCEEEEESC----CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred hcceeEEEEeCCcCC---HHHHHHHHHhcccCceeEEEeeCC----EeccchhhhhhhccCCCCCEEEeecccccchhhh
Confidence 455677777766543 111111 1234567999999999 666 4555544 789999999999997775 23
Q ss_pred ---hhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcc---cchhhhcccccCCCCCe-EEEEeec-
Q 048216 472 ---DEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDI---LGRLLVQILILSCLESL-KLANESK- 543 (654)
Q Consensus 472 ---~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~---~~~~~~l~~l~~~~~~L-~L~l~~~- 543 (654)
..+..+++|++|+++ +.......+..++++++|++|++++|.... ++ ....+..++ +| .|.++++
T Consensus 136 ~~~~~~~~~~~L~~L~Ls---~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~~~~~l~-~L~~L~Ls~N~ 208 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIA---QAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLM---AALCPHKFP-AIQNLALRNTG 208 (310)
T ss_dssp HHHHHTTBCSCCCEEEEE---CCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH---TTSCTTSSC-CCCSCBCCSSC
T ss_pred hHHHHhhhccCCCEEEee---CCCcchhhHHHhccCCCCCEEECCCCCCccchhhh---HHHhhhcCC-CCCEEECCCCC
Confidence 345679999999964 343334455788999999999999986432 21 112234566 89 9999874
Q ss_pred CCCCCCcchh-hhcCCCCccEEEEEeeccCCCCccccccC---cccceEEEeecccCCCeeEEcCCCCccccEEEEecCC
Q 048216 544 MPRRSNIILA-EYQFPPSLTHLSFSNIELMDDPMPALEKL---PVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSML 619 (654)
Q Consensus 544 ~~~lp~~~~~-~~~lp~~L~~L~L~~~~l~~~~l~~l~~l---~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~ 619 (654)
+..+|....+ +..+ ++|++|+|++|.+....++.++.+ ++|++|+|++|... .++ ...+++|++|++++ +
T Consensus 209 l~~l~~~~~~l~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp--~~~~~~L~~L~Ls~-N 282 (310)
T 4glp_A 209 METPTGVCAALAAAG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--QVP--KGLPAKLRVLDLSS-N 282 (310)
T ss_dssp CCCHHHHHHHHHHHT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--SCC--SCCCSCCSCEECCS-C
T ss_pred CCchHHHHHHHHhcC-CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--chh--hhhcCCCCEEECCC-C
Confidence 4344420002 3578 999999999999866555555555 79999999966554 332 23358999999998 5
Q ss_pred CCcceeEcCccccccceeeeecCc
Q 048216 620 WLEEWTMGIRAMPKLECLIINPCA 643 (654)
Q Consensus 620 ~l~~l~~~~~~~p~L~~L~i~~C~ 643 (654)
++..++. ...+|+|+.|++++++
T Consensus 283 ~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 283 RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCCCCch-hhhCCCccEEECcCCC
Confidence 7888765 5678999999999863
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=3.2e-12 Score=127.10 Aligned_cols=173 Identities=20% Similarity=0.182 Sum_probs=113.9
Q ss_pred eeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccCh-hhhccccccceeccccccccCCcccchhcCCCCC
Q 048216 428 FLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNF 506 (654)
Q Consensus 428 ~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~ 506 (654)
..+.++++++ .+..+|..+ . .+|++|+|++|.+..++. .+.++++|++|++++ .......+..+.++++
T Consensus 15 ~~~~l~~~~~----~l~~~p~~~-~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~---n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 15 GKKEVDCQGK----SLDSVPSGI-P--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY---NQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GGTEEECTTC----CCSSCCSCC-C--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT---SCCCCCCTTTTTTCTT
T ss_pred CCeEEecCCC----CccccCCCC-C--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC---CcCCccCHhHhccCCc
Confidence 4566777777 677777665 3 567777777776666543 466777777777533 2122223344667777
Q ss_pred CCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcc
Q 048216 507 ISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPV 584 (654)
Q Consensus 507 L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~ 584 (654)
|++|++++|....++ ...+..++ +| .|++++ .+..+|.. .+..+ ++|++|+|++|.+.......++.+++
T Consensus 85 L~~L~L~~n~l~~~~----~~~~~~l~-~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 85 LGTLGLANNQLASLP----LGVFDHLT-QLDKLYLGGNQLKSLPSG--VFDRL-TKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp CCEEECTTSCCCCCC----TTTTTTCT-TCCEEECCSSCCCCCCTT--TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEECCCCcccccC----hhHhcccC-CCCEEEcCCCcCCCcChh--HhccC-CcccEEECcCCcCCccCHHHcCcCcC
Confidence 777777777655542 23445555 77 777766 34455541 35678 99999999999986655557899999
Q ss_pred cceEEEeecccCCCeeEEcCCCCccccEEEEecCC
Q 048216 585 LQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSML 619 (654)
Q Consensus 585 L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~ 619 (654)
|++|+|++|..... .......+++|+.|++.+++
T Consensus 157 L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 157 LQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCc
Confidence 99999996654321 11234567899999998843
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=3.9e-12 Score=129.47 Aligned_cols=165 Identities=18% Similarity=0.146 Sum_probs=87.8
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+++|+.|.+.++.... . +.+..+++|++|+|++| .+..+|. + +++++|++|++++|.+..+|. +.++
T Consensus 45 l~~L~~L~l~~~~i~~-----~-~~~~~l~~L~~L~L~~n----~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-----V-QGIQYLPNVTKLFLNGN----KLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECCSS----CCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred cCcccEEEccCCCccc-----C-hhHhcCCCCCEEEccCC----ccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccC
Confidence 4555555555544321 1 22455666666666666 5555555 4 666666666666665555543 5666
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhh
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEY 555 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~ 555 (654)
++|++|++++ . ....+ ..+..+++|+.|++++|....+ ..+..++ +| .|+++++ +..++ .+.
T Consensus 112 ~~L~~L~L~~---n-~i~~~-~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~-~L~~L~L~~N~l~~~~----~l~ 175 (291)
T 1h6t_A 112 KKLKSLSLEH---N-GISDI-NGLVHLPQLESLYLGNNKITDI------TVLSRLT-KLDTLSLEDNQISDIV----PLA 175 (291)
T ss_dssp TTCCEEECTT---S-CCCCC-GGGGGCTTCCEEECCSSCCCCC------GGGGGCT-TCSEEECCSSCCCCCG----GGT
T ss_pred CCCCEEECCC---C-cCCCC-hhhcCCCCCCEEEccCCcCCcc------hhhccCC-CCCEEEccCCccccch----hhc
Confidence 6666666433 1 11122 3455566666666666544333 2333444 56 6666553 33333 244
Q ss_pred cCCCCccEEEEEeeccCCCCccccccCcccceEEEeecc
Q 048216 556 QFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNS 594 (654)
Q Consensus 556 ~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~ 594 (654)
.+ ++|+.|+|++|.+.. ++.+..+++|+.|++++|.
T Consensus 176 ~l-~~L~~L~L~~N~i~~--l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 176 GL-TKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TC-TTCCEEECCSSCCCB--CGGGTTCTTCSEEEEEEEE
T ss_pred CC-CccCEEECCCCcCCC--ChhhccCCCCCEEECcCCc
Confidence 55 666666666666532 3446666666666666544
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=1.7e-12 Score=143.77 Aligned_cols=182 Identities=17% Similarity=0.143 Sum_probs=127.8
Q ss_pred eeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCC
Q 048216 428 FLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFI 507 (654)
Q Consensus 428 ~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L 507 (654)
+|++|+|++| .+..+|..+ . ++|++|+|++|.+..+| ..+++|++|++++ . ....+|. +.+ +|
T Consensus 60 ~L~~L~Ls~n----~L~~lp~~l-~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~---N-~l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRL----NLSSLPDNL-P--PQITVLEITQNALISLP---ELPASLEYLDACD---N-RLSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSS----CCSCCCSCC-C--TTCSEEECCSSCCSCCC---CCCTTCCEEECCS---S-CCSCCCC-CCT--TC
T ss_pred CccEEEeCCC----CCCccCHhH-c--CCCCEEECcCCCCcccc---cccCCCCEEEccC---C-CCCCcch-hhc--CC
Confidence 7888888888 788888777 3 78888888888888888 4578888888644 2 2333565 554 88
Q ss_pred CeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCccc
Q 048216 508 SALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVL 585 (654)
Q Consensus 508 ~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L 585 (654)
++|++++|....+| . .++ +| .|+++++ +..+|. .+ ++|++|+|++|.++. +|.+. ++|
T Consensus 123 ~~L~Ls~N~l~~lp---~-----~l~-~L~~L~Ls~N~l~~lp~------~l-~~L~~L~Ls~N~L~~--lp~l~--~~L 182 (571)
T 3cvr_A 123 KHLDVDNNQLTMLP---E-----LPA-LLEYINADNNQLTMLPE------LP-TSLEVLSVRNNQLTF--LPELP--ESL 182 (571)
T ss_dssp CEEECCSSCCSCCC---C-----CCT-TCCEEECCSSCCSCCCC------CC-TTCCEEECCSSCCSC--CCCCC--TTC
T ss_pred CEEECCCCcCCCCC---C-----cCc-cccEEeCCCCccCcCCC------cC-CCcCEEECCCCCCCC--cchhh--CCC
Confidence 88888888766665 2 345 88 8888774 455664 34 888999999888754 33354 889
Q ss_pred ceEEEeecccCCCeeEEcCCCCccc-------cEEEEecCCCCcceeEcCccccccceeeeecCcCCccccccc
Q 048216 586 QVLKLKQNSYSGRKLACSSDGFPKL-------KVLHLKSMLWLEEWTMGIRAMPKLECLIINPCAHLKGFLNSF 652 (654)
Q Consensus 586 ~~L~L~~~~~~~~~l~~~~~~f~~L-------~~L~l~~~~~l~~l~~~~~~~p~L~~L~i~~C~~L~~lP~~l 652 (654)
+.|+|++|... .++. .. .+| +.|++++ +.+..+|.....+++|+.|++++|+--..+|..+
T Consensus 183 ~~L~Ls~N~L~--~lp~-~~--~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 183 EALDVSTNLLE--SLPA-VP--VRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CEEECCSSCCS--SCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CEEECcCCCCC--chhh-HH--HhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 99999865543 2222 11 256 8889987 5688888777778999999998875434466543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=4.4e-12 Score=122.16 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=63.0
Q ss_pred ccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccCh
Q 048216 393 FLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTAD 472 (654)
Q Consensus 393 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~ 472 (654)
++..+.++++.|.+.++... .+.+..|.++++|++|+|++| .+..+|...|..+++|++|++++|.+..+|.
T Consensus 22 ~p~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 22 VPTGIPAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGN----KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp CCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCCCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCC----ccCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 33333556666666666543 233445566666667777666 5666666554666667777776666666654
Q ss_pred h-hhccccccceeccccccccCCcccch-hcCCCCCCCeEEEeccC
Q 048216 473 E-FWKVSKLRYLNFGAITLPAHPGKYCN-SLENLNFISALHHCYCT 516 (654)
Q Consensus 473 ~-i~~L~~L~~L~l~~l~~l~~~~~l~~-~l~~l~~L~~L~l~~~~ 516 (654)
. +.++++|++|++++ . ....++. .+.++++|++|++++|.
T Consensus 94 ~~~~~l~~L~~L~L~~---N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 94 GVFDKLTQLKELALNT---N-QLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp TTTTTCTTCCEEECCS---S-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCccCCCEEEcCC---C-cCcccCHhHhccCCcCCEEECCCCc
Confidence 4 45666666666432 1 1122222 34555666666665553
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=7.1e-13 Score=139.42 Aligned_cols=210 Identities=14% Similarity=0.114 Sum_probs=109.2
Q ss_pred cCceeEEEEecCCCCccc-c----ccc--cC-ceeEEEEecCCCCCCChhhhHhhhccc-ceeeEEecCCCCCCCCCCcC
Q 048216 376 RENVKRFTAHEKLNDFGF-L----DDF--DS-FLHSLLYLTSGSQYLDPTYCEKICKMF-KFLRVLNLGSLLNIPSLKSL 446 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~-~----~~~--~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~lp~i~~l 446 (654)
+.++++|.+. ++..... . ..+ ++ +|++|.+.++.........+...+... +.|++|+|++| .+...
T Consensus 21 ~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n----~l~~~ 95 (362)
T 3goz_A 21 PHGVTSLDLS-LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN----FLSYK 95 (362)
T ss_dssp CTTCCEEECT-TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS----CGGGS
T ss_pred CCCceEEEcc-CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC----cCChH
Confidence 3457777776 3333222 2 223 44 677777777654321111222222332 77777777777 56644
Q ss_pred Chh-H---HhcC-CCceEEcCCCccccccChh-----hhc-cccccceecccccccc--CCcccchhcCCCC-CCCeEEE
Q 048216 447 PSS-L---LSSL-LNLYTLDMPFSYIDHTADE-----FWK-VSKLRYLNFGAITLPA--HPGKYCNSLENLN-FISALHH 512 (654)
Q Consensus 447 P~~-i---f~~L-~~L~~L~L~~~~l~~lP~~-----i~~-L~~L~~L~l~~l~~l~--~~~~l~~~l~~l~-~L~~L~l 512 (654)
+.. + |..+ ++|++|++++|.+...+.. +.. .++|++|++++ ..+. ....++..+..++ +|++|++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHHHHHHHhcCCccccEeee
Confidence 433 2 1333 6777777777766665432 223 24777777543 1111 1123445555554 7777777
Q ss_pred eccCCcccchhhhcccccCCCCCe-EEEEeec-CCC-----CCCcchhhhcCCCCccEEEEEeeccCCCCcc----cccc
Q 048216 513 CYCTEDILGRLLVQILILSCLESL-KLANESK-MPR-----RSNIILAEYQFPPSLTHLSFSNIELMDDPMP----ALEK 581 (654)
Q Consensus 513 ~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~-----lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~----~l~~ 581 (654)
++|.............+...+++| .|+++++ ++. +|. .+..++++|++|+|++|.+...... .+..
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~---~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY---IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH---HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH---HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 777543331100112233332267 7777653 222 343 4444435777777777776554432 2355
Q ss_pred CcccceEEEeecc
Q 048216 582 LPVLQVLKLKQNS 594 (654)
Q Consensus 582 l~~L~~L~L~~~~ 594 (654)
+++|+.|+|++|.
T Consensus 252 l~~L~~L~L~~n~ 264 (362)
T 3goz_A 252 LKHLQTVYLDYDI 264 (362)
T ss_dssp TTTCSEEEEEHHH
T ss_pred CCCccEEEeccCC
Confidence 6777777777554
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.28 E-value=3.3e-12 Score=144.35 Aligned_cols=182 Identities=16% Similarity=0.040 Sum_probs=117.3
Q ss_pred ccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCcccccc
Q 048216 391 FGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHT 470 (654)
Q Consensus 391 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~l 470 (654)
..+|..+.++++.|.+.++... .+.+..|.++++|++|+|++| .|..+|+..|++|++|++|+|++|.++.+
T Consensus 44 ~~vP~~lp~~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N----~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 44 YKIPDNLPFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRC----EIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp SSCCSSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTC----CCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CccCCCCCcCCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCC----cCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 3456555678888888888764 355667888899999999998 88888776558899999999999888888
Q ss_pred Chh-hhccccccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCC
Q 048216 471 ADE-FWKVSKLRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPR 546 (654)
Q Consensus 471 P~~-i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~ 546 (654)
|.. |.+|++|++|++++ . ....++ ..++++++|++|++++|....++ ....+..++ +| .|.++++ +..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~---N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~-~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVE---T-NLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLT-NLEHLDLSSNKIQS 187 (635)
T ss_dssp CGGGGTTCTTCCEEECTT---S-CCCCSTTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCT-TCCEEECCSSCCCE
T ss_pred CHHHhcCCCCCCEEECCC---C-cCCCCChhhhhcCcccCeeccccCccccCC---Cchhhccch-hhhhhcccCccccc
Confidence 754 78888999998644 2 223344 35788888888888888655442 223444555 77 7777653 333
Q ss_pred CCCcchhhhc---CCCCccEEEEEeeccCCCCccccccCcccceEEEe
Q 048216 547 RSNIILAEYQ---FPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLK 591 (654)
Q Consensus 547 lp~~~~~~~~---lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~ 591 (654)
++.. .+.. ++..+..++++.+.+..... .......+..|.+.
T Consensus 188 ~~~~--~l~~L~~l~~~~~~~~ls~n~l~~i~~-~~~~~~~~~~l~l~ 232 (635)
T 4g8a_A 188 IYCT--DLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLHKLTLR 232 (635)
T ss_dssp ECGG--GGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTCEEEEEEEE
T ss_pred cccc--cccchhhhhhhhhhhhcccCcccccCc-ccccchhhhhhhhh
Confidence 3221 3322 22233455666555432222 22233345556666
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=1.1e-11 Score=138.61 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=79.5
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+++|+.|.+.++.... +. + +..+++|+.|+|++| .+..+| .+ +.|++|++|+|++|.+..+| .+..|
T Consensus 64 l~~L~~L~Ls~N~l~~----~~-~-l~~l~~L~~L~Ls~N----~l~~l~-~l-~~l~~L~~L~Ls~N~l~~l~-~l~~l 130 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTD----IK-P-LTNLKNLGWLFLDEN----KIKDLS-SL-KDLKKLKSLSLEHNGISDIN-GLVHL 130 (605)
T ss_dssp CTTCCEEECTTSCCCC----CG-G-GGGCTTCCEEECCSS----CCCCCT-TS-TTCTTCCEEECTTSCCCCCG-GGGGC
T ss_pred CCCCCEEEeeCCCCCC----Ch-h-hccCCCCCEEECcCC----CCCCCh-hh-ccCCCCCEEEecCCCCCCCc-cccCC
Confidence 5666666665554431 11 1 555666666666666 555554 34 56666666666666555553 35566
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhh
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEY 555 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~ 555 (654)
++|++|++++ . ....+ ..+..+++|+.|+|++|....++ . +..++ +| .|+++++ +..+| .+.
T Consensus 131 ~~L~~L~Ls~---N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~---~---l~~l~-~L~~L~Ls~N~i~~l~----~l~ 194 (605)
T 1m9s_A 131 PQLESLYLGN---N-KITDI-TVLSRLTKLDTLSLEDNQISDIV---P---LAGLT-KLQNLYLSKNHISDLR----ALA 194 (605)
T ss_dssp TTCSEEECCS---S-CCCCC-GGGGSCTTCSEEECCSSCCCCCG---G---GTTCT-TCCEEECCSSCCCBCG----GGT
T ss_pred CccCEEECCC---C-ccCCc-hhhcccCCCCEEECcCCcCCCch---h---hccCC-CCCEEECcCCCCCCCh----HHc
Confidence 6666666432 1 11122 34555566666666655444432 1 44444 55 6666542 33343 344
Q ss_pred cCCCCccEEEEEeeccCCCCccccccC
Q 048216 556 QFPPSLTHLSFSNIELMDDPMPALEKL 582 (654)
Q Consensus 556 ~lp~~L~~L~L~~~~l~~~~l~~l~~l 582 (654)
.+ ++|+.|+|++|.+...++..+..+
T Consensus 195 ~l-~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 195 GL-KNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp TC-TTCSEEECCSEEEECCCCCCCSSC
T ss_pred cC-CCCCEEEccCCcCcCCcccccccE
Confidence 55 566666666655544444333333
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.27 E-value=2.7e-12 Score=128.57 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=118.3
Q ss_pred hhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhc
Q 048216 422 ICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSL 501 (654)
Q Consensus 422 ~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l 501 (654)
.+..+++|++|++++| .+..+| .+ +.+++|++|++++|.+..+|. +.++++|++|++++ . ....++. +
T Consensus 36 ~~~~l~~L~~L~l~~n----~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~---N-~l~~l~~-~ 103 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNS----NIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR---N-RLKNLNG-I 103 (263)
T ss_dssp CHHHHTTCSEEECTTS----CCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS---S-CCSCCTT-C
T ss_pred chhhcCcCcEEECcCC----Ccccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC---C-ccCCcCc-c
Confidence 4678999999999999 889998 67 999999999999999999987 99999999999754 2 2233443 2
Q ss_pred CCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCcccc
Q 048216 502 ENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPAL 579 (654)
Q Consensus 502 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l 579 (654)
.. ++|++|++++|....++ .+..++ +| .|++++ .+..+| .+..+ ++|+.|+|++|.+... +.+
T Consensus 104 ~~-~~L~~L~L~~N~l~~~~------~l~~l~-~L~~L~Ls~N~i~~~~----~l~~l-~~L~~L~L~~N~i~~~--~~l 168 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDTD------SLIHLK-NLEILSIRNNKLKSIV----MLGFL-SKLEVLDLHGNEITNT--GGL 168 (263)
T ss_dssp CC-SSCCEEECCSSCCSBSG------GGTTCT-TCCEEECTTSCCCBCG----GGGGC-TTCCEEECTTSCCCBC--TTS
T ss_pred cc-CcccEEEccCCccCCCh------hhcCcc-cccEEECCCCcCCCCh----HHccC-CCCCEEECCCCcCcch--HHh
Confidence 33 89999999998766553 466677 89 999987 455565 57788 9999999999987544 778
Q ss_pred ccCcccceEEEeecccCC
Q 048216 580 EKLPVLQVLKLKQNSYSG 597 (654)
Q Consensus 580 ~~l~~L~~L~L~~~~~~~ 597 (654)
..+++|+.|++++|....
T Consensus 169 ~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEeCCCCcccC
Confidence 899999999999766543
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=1.8e-11 Score=122.54 Aligned_cols=149 Identities=14% Similarity=0.084 Sum_probs=110.6
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+++|+.|.+.++.... .+ .+..+++|+.|+|++| .+..+|. + +++++|++|++++|.+..+|....
T Consensus 40 l~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~L~~N----~i~~~~~-l-~~l~~L~~L~L~~N~l~~l~~~~~-- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-----LA-GMQFFTNLKELHLSHN----QISDLSP-L-KDLTKLEELSVNRNRLKNLNGIPS-- 105 (263)
T ss_dssp HTTCSEEECTTSCCCC-----CT-TGGGCTTCCEEECCSS----CCCCCGG-G-TTCSSCCEEECCSSCCSCCTTCCC--
T ss_pred cCcCcEEECcCCCccc-----ch-HHhhCCCCCEEECCCC----ccCCChh-h-ccCCCCCEEECCCCccCCcCcccc--
Confidence 7888999888876542 22 5778888999999998 7888887 6 899999999999998888876443
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhh
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILAEY 555 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~ 555 (654)
.+|++|++++ . ....+ ..+.++++|+.|++++|....++ .+..++ +| .|+++++ +..+ . .+.
T Consensus 106 ~~L~~L~L~~---N-~l~~~-~~l~~l~~L~~L~Ls~N~i~~~~------~l~~l~-~L~~L~L~~N~i~~~-~---~l~ 169 (263)
T 1xeu_A 106 ACLSRLFLDN---N-ELRDT-DSLIHLKNLEILSIRNNKLKSIV------MLGFLS-KLEVLDLHGNEITNT-G---GLT 169 (263)
T ss_dssp SSCCEEECCS---S-CCSBS-GGGTTCTTCCEEECTTSCCCBCG------GGGGCT-TCCEEECTTSCCCBC-T---TST
T ss_pred CcccEEEccC---C-ccCCC-hhhcCcccccEEECCCCcCCCCh------HHccCC-CCCEEECCCCcCcch-H---Hhc
Confidence 8889998654 2 22233 35788889999999888766553 455566 88 8888874 4444 3 667
Q ss_pred cCCCCccEEEEEeeccCCCCcc
Q 048216 556 QFPPSLTHLSFSNIELMDDPMP 577 (654)
Q Consensus 556 ~lp~~L~~L~L~~~~l~~~~l~ 577 (654)
.+ ++|+.|++++|.+...+..
T Consensus 170 ~l-~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 170 RL-KKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp TC-CCCCEEEEEEEEEECCCEE
T ss_pred cC-CCCCEEeCCCCcccCCccc
Confidence 78 8899999999887655433
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.26 E-value=1.4e-11 Score=118.68 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=95.2
Q ss_pred cceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChh-hhccccccceeccccccccCCcccc-hhcCC
Q 048216 426 FKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYC-NSLEN 503 (654)
Q Consensus 426 l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~ 503 (654)
.++|++|+|++| .+..+|...|+++++|++|++++|.+..+|.. +..+++|++|++++ . ....++ ..+.+
T Consensus 27 ~~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~---n-~l~~~~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETN----SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST---N-QLQSLPNGVFDK 98 (208)
T ss_dssp CTTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS---S-CCCCCCTTTTTT
T ss_pred CCCCcEEEcCCC----ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC---C-cCCccCHhHhcC
Confidence 346777777777 66666665556777777777777777666654 46667777776433 2 122233 23456
Q ss_pred CCCCCeEEEeccCCcccchhhhcccccCCCCCeEEEEeecCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCc
Q 048216 504 LNFISALHHCYCTEDILGRLLVQILILSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLP 583 (654)
Q Consensus 504 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~L~l~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~ 583 (654)
+++|++|++++|... .+|.. .+..+ ++|++|+|++|.+.......+..++
T Consensus 99 l~~L~~L~L~~N~l~---------------------------~~~~~--~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 99 LTQLKELALNTNQLQ---------------------------SLPDG--VFDKL-TQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp CTTCCEEECCSSCCC---------------------------CCCTT--TTTTC-TTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ccCCCEEEcCCCcCc---------------------------ccCHh--HhccC-CcCCEEECCCCccceeCHHHhccCC
Confidence 666666666655322 22220 34556 7777777777776544444467777
Q ss_pred ccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCccccc
Q 048216 584 VLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIRAMPK 633 (654)
Q Consensus 584 ~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~~~p~ 633 (654)
+|++|++++|.+. +.+++|+.|.++....-..+|...+.++.
T Consensus 149 ~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 149 SLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CccEEEecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 7888877755332 23566777766653333355554444443
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=2.3e-13 Score=144.44 Aligned_cols=250 Identities=14% Similarity=0.086 Sum_probs=164.1
Q ss_pred CceeEEEEecCCCCcc----ccccc--cCceeEEEEecCCCCCCChh------hhHhhhcccceeeEEecCCCCCCCCCC
Q 048216 377 ENVKRFTAHEKLNDFG----FLDDF--DSFLHSLLYLTSGSQYLDPT------YCEKICKMFKFLRVLNLGSLLNIPSLK 444 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~----~~~~~--~~~Lr~L~l~~~~~~~~~~~------~~~~~~~~l~~Lr~L~L~~~~~lp~i~ 444 (654)
.++++|.+..+..... +...+ +++|++|.+.++........ .+...+..+++|++|+|++| .+.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n----~l~ 107 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN----AFG 107 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC----CCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC----cCC
Confidence 4578888873322222 22223 88999999988754322222 22334688999999999999 676
Q ss_pred c-----CChhHHhcCCCceEEcCCCcccc-----ccChhhhcc---------ccccceeccccccccCC-cccc---hhc
Q 048216 445 S-----LPSSLLSSLLNLYTLDMPFSYID-----HTADEFWKV---------SKLRYLNFGAITLPAHP-GKYC---NSL 501 (654)
Q Consensus 445 ~-----lP~~if~~L~~L~~L~L~~~~l~-----~lP~~i~~L---------~~L~~L~l~~l~~l~~~-~~l~---~~l 501 (654)
. +|..+ .++++|++|+|++|.+. .++..+..+ ++|++|++++ .+.. ..++ ..+
T Consensus 108 ~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~---n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 108 PTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR---NRLENGSMKEWAKTF 183 (386)
T ss_dssp TTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS---SCCTGGGHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC---CCCCcHHHHHHHHHH
Confidence 5 78888 99999999999999775 344555566 8999999654 3211 2333 577
Q ss_pred CCCCCCCeEEEeccCCcccchhhhcc-cccCCCCCe-EEEEeec-C-----CCCCCcchhhhcCCCCccEEEEEeeccCC
Q 048216 502 ENLNFISALHHCYCTEDILGRLLVQI-LILSCLESL-KLANESK-M-----PRRSNIILAEYQFPPSLTHLSFSNIELMD 573 (654)
Q Consensus 502 ~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~~~~~L-~L~l~~~-~-----~~lp~~~~~~~~lp~~L~~L~L~~~~l~~ 573 (654)
..+++|++|++++|............ .+..++ +| .|+++++ + ..+|. ++..+ ++|++|+|++|.+..
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~---~l~~~-~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAI---ALKSW-PNLRELGLNDCLLSA 258 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHH---HGGGC-TTCCEEECTTCCCCH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHH---HHccC-CCcCEEECCCCCCch
Confidence 78899999999998654210000122 566677 99 9999874 3 23566 77788 999999999998754
Q ss_pred CC----cccc--ccCcccceEEEeecccCCC---eeEEcC-CCCccccEEEEecCCCCccee----EcCccccccceeee
Q 048216 574 DP----MPAL--EKLPVLQVLKLKQNSYSGR---KLACSS-DGFPKLKVLHLKSMLWLEEWT----MGIRAMPKLECLII 639 (654)
Q Consensus 574 ~~----l~~l--~~l~~L~~L~L~~~~~~~~---~l~~~~-~~f~~L~~L~l~~~~~l~~l~----~~~~~~p~L~~L~i 639 (654)
.. ...+ +++++|++|+|++|..... .++... ..+++|++|++++++ +.... .-...+|+++.+.+
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEE
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchh
Confidence 31 2234 4489999999996654331 122222 347999999999853 43222 11224566665555
Q ss_pred e
Q 048216 640 N 640 (654)
Q Consensus 640 ~ 640 (654)
.
T Consensus 338 ~ 338 (386)
T 2ca6_A 338 D 338 (386)
T ss_dssp C
T ss_pred h
Confidence 3
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.26 E-value=8.3e-13 Score=148.30 Aligned_cols=157 Identities=16% Similarity=0.079 Sum_probs=84.2
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCC-----cCChhHHhcCCCceEEcCCCccccccCh
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLK-----SLPSSLLSSLLNLYTLDMPFSYIDHTAD 472 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~-----~lP~~if~~L~~L~~L~L~~~~l~~lP~ 472 (654)
+++|++|.+.++........++...+..+++|+.|+|++| .+. .++..+ .++++|++|++++|.+..+|.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n----~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~ 237 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT----EFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVG 237 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC----CCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc----CCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHH
Confidence 5666666666554321112224445566666666666666 443 333333 667777777777776666776
Q ss_pred hhhccccccceecccc----------------cccc-------CCcccchhcCCCCCCCeEEEeccCCcccchhhhcccc
Q 048216 473 EFWKVSKLRYLNFGAI----------------TLPA-------HPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILI 529 (654)
Q Consensus 473 ~i~~L~~L~~L~l~~l----------------~~l~-------~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 529 (654)
.+.++++|++|+++.. ++++ ....+|..+..+++|++|++++|...... ....+
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~~~ 314 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED---HCTLI 314 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH---HHHHH
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH---HHHHH
Confidence 6777777777765420 0110 23345566667778888888777532221 11223
Q ss_pred cCCCCCe-EEEEeecCC--CCCCcchhhhcCCCCccEEEEE
Q 048216 530 LSCLESL-KLANESKMP--RRSNIILAEYQFPPSLTHLSFS 567 (654)
Q Consensus 530 ~~~~~~L-~L~l~~~~~--~lp~~~~~~~~lp~~L~~L~L~ 567 (654)
..++ +| .|++..+.. .++. ....+ ++|++|+|+
T Consensus 315 ~~~~-~L~~L~L~~~~~~~~l~~---~~~~~-~~L~~L~L~ 350 (592)
T 3ogk_B 315 QKCP-NLEVLETRNVIGDRGLEV---LAQYC-KQLKRLRIE 350 (592)
T ss_dssp TTCT-TCCEEEEEGGGHHHHHHH---HHHHC-TTCCEEEEE
T ss_pred HhCc-CCCEEeccCccCHHHHHH---HHHhC-CCCCEEEee
Confidence 4445 66 666653321 1222 22344 556666666
No 105
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.26 E-value=2.1e-13 Score=148.23 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=46.4
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCc-CChhHHhcCC----CceEEcCCCcccc----
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKS-LPSSLLSSLL----NLYTLDMPFSYID---- 468 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~-lP~~if~~L~----~L~~L~L~~~~l~---- 468 (654)
+++|++|.+.++.........++..+..+++|++|+|++| .+.. -+..++..+. +|++|++++|.+.
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n----~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN----ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC----CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC----cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 5666666666665431001133455566666666666666 4443 2233323344 4666666666554
Q ss_pred -ccChhhhccccccceecc
Q 048216 469 -HTADEFWKVSKLRYLNFG 486 (654)
Q Consensus 469 -~lP~~i~~L~~L~~L~l~ 486 (654)
.+|..+.++++|++|+++
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls 121 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLS 121 (461)
T ss_dssp HHHHHHTTSCTTCCEEECC
T ss_pred HHHHHHHccCCceeEEECC
Confidence 345666666666666654
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=6.9e-14 Score=155.47 Aligned_cols=196 Identities=18% Similarity=0.108 Sum_probs=134.9
Q ss_pred cccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCcc--------------ccccChhhhcccccccee-ccc-
Q 048216 424 KMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSY--------------IDHTADEFWKVSKLRYLN-FGA- 487 (654)
Q Consensus 424 ~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~--------------l~~lP~~i~~L~~L~~L~-l~~- 487 (654)
...++|+.|+|++| .+..+|++| ++|.+|+.|++++|. ....|..++.|++|++|+ ++.
T Consensus 346 ~~~~~L~~L~Ls~n----~L~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVE----KSTVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHH----HHHHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChh----hHHhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 56788999999999 899999999 999999999997763 234567788888888888 322
Q ss_pred -cccccCCcccchhcCC--CCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCcc
Q 048216 488 -ITLPAHPGKYCNSLEN--LNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLT 562 (654)
Q Consensus 488 -l~~l~~~~~l~~~l~~--l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~ 562 (654)
+.++....-....+.. ...|+.|++++|....+| . +..++ +| .|++++ .+..+|. .+..+ ++|+
T Consensus 421 ~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp---~---~~~l~-~L~~L~Ls~N~l~~lp~---~~~~l-~~L~ 489 (567)
T 1dce_A 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC---H---LEQLL-LVTHLDLSHNRLRALPP---ALAAL-RCLE 489 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC---C---GGGGT-TCCEEECCSSCCCCCCG---GGGGC-TTCC
T ss_pred ccchhhhhhhhcccccccCccCceEEEecCCCCCCCc---C---ccccc-cCcEeecCcccccccch---hhhcC-CCCC
Confidence 1111100000001111 125888999888766665 2 55566 88 888887 4567888 88888 8999
Q ss_pred EEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeEcCc----cccccceee
Q 048216 563 HLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTMGIR----AMPKLECLI 638 (654)
Q Consensus 563 ~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~~~~----~~p~L~~L~ 638 (654)
.|+|++|.++. +|.++++++|+.|+|++|...+...+...+.+++|+.|++++ +.+..++.... .+|+|+.|+
T Consensus 490 ~L~Ls~N~l~~--lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 490 VLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECCSSCCCC--CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEECCCCCCCC--CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence 99999888754 457888899999999866553321134455688888888887 45666654332 367777764
No 107
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=1.4e-12 Score=146.54 Aligned_cols=223 Identities=14% Similarity=0.030 Sum_probs=143.5
Q ss_pred cCceeEEEEecCCCCccccccc---c-CceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCc-----C
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF---D-SFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKS-----L 446 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~---~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~-----l 446 (654)
..++++|.+..+......+..+ + ++|+.|.+.++... ....+.....++++|++|+|++| .+.. +
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~----~~~~~~~~~l 184 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEES----SFSEKDGKWL 184 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTC----EEECCCSHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccc----cccCcchhHH
Confidence 3567888887332222222223 3 34999999887632 12344556678899999999999 5432 3
Q ss_pred ChhHHhcCCCceEEcCCCcccc-----ccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccc
Q 048216 447 PSSLLSSLLNLYTLDMPFSYID-----HTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILG 521 (654)
Q Consensus 447 P~~if~~L~~L~~L~L~~~~l~-----~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~ 521 (654)
+... .++++|++|++++|.+. .++..+.++++|++|++++ + ....++..+.++++|++|+++.+.....
T Consensus 185 ~~~~-~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~---~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~- 258 (592)
T 3ogk_B 185 HELA-QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD---F-EILELVGFFKAAANLEEFCGGSLNEDIG- 258 (592)
T ss_dssp HHHH-HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS---C-BGGGGHHHHHHCTTCCEEEECBCCCCTT-
T ss_pred HHHH-hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC---c-cHHHHHHHHhhhhHHHhhcccccccccc-
Confidence 3444 78999999999998665 4566677889999999644 3 3345778888899999999986432211
Q ss_pred hhhhcccccCCCCCe-EEEEeec-CCCCCCcchhhhcCCCCccEEEEEeeccCCCCcc-ccccCcccceEEEeecccCCC
Q 048216 522 RLLVQILILSCLESL-KLANESK-MPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMP-ALEKLPVLQVLKLKQNSYSGR 598 (654)
Q Consensus 522 ~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~-~l~~l~~L~~L~L~~~~~~~~ 598 (654)
.......+..++ +| .|.+.+. ...+|. .+..+ ++|++|+|++|.+....+. .+..+++|++|+++ ++....
T Consensus 259 ~~~~~~~l~~~~-~L~~L~l~~~~~~~l~~---~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~ 332 (592)
T 3ogk_B 259 MPEKYMNLVFPR-KLCRLGLSYMGPNEMPI---LFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR 332 (592)
T ss_dssp CTTSSSCCCCCT-TCCEEEETTCCTTTGGG---GGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH
T ss_pred hHHHHHHhhccc-cccccCccccchhHHHH---HHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH
Confidence 001334566666 88 8888764 235676 66677 8999999999885443332 25778888888887 333222
Q ss_pred eeEEcCCCCccccEEEEe
Q 048216 599 KLACSSDGFPKLKVLHLK 616 (654)
Q Consensus 599 ~l~~~~~~f~~L~~L~l~ 616 (654)
.+......+++|++|++.
T Consensus 333 ~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp HHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhCCCCCEEEee
Confidence 221112235566666666
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=2.6e-12 Score=147.22 Aligned_cols=151 Identities=11% Similarity=-0.042 Sum_probs=86.4
Q ss_pred cCceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhc
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSS 453 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~ 453 (654)
...++++.+. .+.....+... ..+|+.+.+............++..|..++.|++|+|++| .+..+|..+ ++
T Consensus 172 ~~~~~~l~L~-~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n----~l~~l~~~~-~~ 245 (727)
T 4b8c_D 172 TPLTPKIELF-ANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL----QIFNISANI-FK 245 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTS----CCSCCCGGG-GG
T ss_pred CCccceEEee-CCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC----CCCCCChhh-cC
Confidence 3457788876 33333233222 4445544444332211112356778899999999999999 899999999 79
Q ss_pred CCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCC
Q 048216 454 LLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCL 533 (654)
Q Consensus 454 L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~ 533 (654)
|.+|++|+|++|.+..+|..|++|++|++|+|++ . ....+|..++++++|++|+|++|....+| ..+..++
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~---N-~l~~lp~~~~~l~~L~~L~L~~N~l~~lp-----~~~~~l~ 316 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH---N-RLTSLPAELGSCFQLKYFYFFDNMVTTLP-----WEFGNLC 316 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT---S-CCSSCCSSGGGGTTCSEEECCSSCCCCCC-----SSTTSCT
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC---C-cCCccChhhcCCCCCCEEECCCCCCCccC-----hhhhcCC
Confidence 9999999999999999999999999999999654 3 33478999999999999999998665554 2355555
Q ss_pred CCe-EEEEee
Q 048216 534 ESL-KLANES 542 (654)
Q Consensus 534 ~~L-~L~l~~ 542 (654)
+| .|++++
T Consensus 317 -~L~~L~L~~ 325 (727)
T 4b8c_D 317 -NLQFLGVEG 325 (727)
T ss_dssp -TCCCEECTT
T ss_pred -CccEEeCCC
Confidence 66 666665
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=5.6e-13 Score=140.19 Aligned_cols=240 Identities=15% Similarity=0.083 Sum_probs=152.0
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccc-eeeEEecCCCCCCCCCCcCC-hhHHhcC-----CCceEEcCCCcccccc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFK-FLRVLNLGSLLNIPSLKSLP-SSLLSSL-----LNLYTLDMPFSYIDHT 470 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~lp~i~~lP-~~if~~L-----~~L~~L~L~~~~l~~l 470 (654)
.++|+.|.+.++.........+...+.+++ +|++|+|++| .+.... ..+ +.+ .+|++|+|++|.+...
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N----~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN----SLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS----CGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC----CCCHHHHHHH-HHHHhccCCCccEEECcCCcCChH
Confidence 556999999998865322233346788888 8999999999 777664 444 775 9999999999988865
Q ss_pred Ch-h----hhcc-ccccceecccccccc--CCcccchhcCCC-CCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEE
Q 048216 471 AD-E----FWKV-SKLRYLNFGAITLPA--HPGKYCNSLENL-NFISALHHCYCTEDILGRLLVQILILSCLESL-KLAN 540 (654)
Q Consensus 471 P~-~----i~~L-~~L~~L~l~~l~~l~--~~~~l~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l 540 (654)
+. . +..+ ++|++|++++ ..+. ....+...+..+ ++|++|++++|.............+...+++| .|++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 43 3 4444 8999999654 1111 111223345554 69999999998654321001123334343389 9999
Q ss_pred eec-CCCC-CCc-chhhhcCCCCccEEEEEeeccCCCCcc----cccc-CcccceEEEeecccCCCe---eEEcCCCCcc
Q 048216 541 ESK-MPRR-SNI-ILAEYQFPPSLTHLSFSNIELMDDPMP----ALEK-LPVLQVLKLKQNSYSGRK---LACSSDGFPK 609 (654)
Q Consensus 541 ~~~-~~~l-p~~-~~~~~~lp~~L~~L~L~~~~l~~~~l~----~l~~-l~~L~~L~L~~~~~~~~~---l~~~~~~f~~ 609 (654)
+++ +... +.. ...+...|++|++|+|++|.+...... .+.. .++|++|+|++|...... +......+++
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 874 3222 210 002334535999999999987654433 2334 359999999976554421 1223456789
Q ss_pred ccEEEEecCC--C-----CcceeEcCccccccceeeeecCc
Q 048216 610 LKVLHLKSML--W-----LEEWTMGIRAMPKLECLIINPCA 643 (654)
Q Consensus 610 L~~L~l~~~~--~-----l~~l~~~~~~~p~L~~L~i~~C~ 643 (654)
|+.|+++++. . +..+......+++|+.|++++++
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 9999999853 0 22222334567888888888863
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=5.6e-11 Score=116.32 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=70.4
Q ss_pred ceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChh-hhccccccceeccccccccCCcccchhcCCCC
Q 048216 427 KFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYCNSLENLN 505 (654)
Q Consensus 427 ~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~ 505 (654)
++|++|+|++| .+..++...|+++.+|++|+|++|.+..+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~--------------------- 94 (229)
T 3e6j_A 40 TNAQILYLHDN----QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD--------------------- 94 (229)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---------------------
T ss_pred CCCCEEEcCCC----ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE---------------------
Confidence 44555555555 44444322225555555555555555555432 34445555554
Q ss_pred CCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCc
Q 048216 506 FISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLP 583 (654)
Q Consensus 506 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~ 583 (654)
+++|....++ ...+..++ +| .|.+++ .+..+|. .+..+ ++|++|+|++|.+.......+..++
T Consensus 95 ------Ls~N~l~~l~----~~~~~~l~-~L~~L~Ls~N~l~~lp~---~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 95 ------LGTNQLTVLP----SAVFDRLV-HLKELFMCCNKLTELPR---GIERL-THLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp ------CCSSCCCCCC----TTTTTTCT-TCCEEECCSSCCCSCCT---TGGGC-TTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred ------CCCCcCCccC----hhHhCcch-hhCeEeccCCcccccCc---ccccC-CCCCEEECCCCcCCccCHHHHhCCC
Confidence 4444333331 12233344 55 555544 3445666 66777 8888888888877655545577788
Q ss_pred ccceEEEeeccc
Q 048216 584 VLQVLKLKQNSY 595 (654)
Q Consensus 584 ~L~~L~L~~~~~ 595 (654)
+|+.|+|.+|.+
T Consensus 160 ~L~~L~l~~N~~ 171 (229)
T 3e6j_A 160 SLTHAYLFGNPW 171 (229)
T ss_dssp TCCEEECTTSCB
T ss_pred CCCEEEeeCCCc
Confidence 888888876544
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=3.9e-11 Score=114.52 Aligned_cols=147 Identities=13% Similarity=0.106 Sum_probs=97.5
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccc-cChhhhc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDH-TADEFWK 476 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~-lP~~i~~ 476 (654)
+++|+.|.+.++.... ++ .+..+++|++|++++| .+..+| .+ +.+++|++|++++|.+.. .|..+++
T Consensus 43 l~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~l~~n----~~~~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-----LT-GIEYAHNIKDLTINNI----HATNYN-PI-SGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHTCCEEEEESSCCSC-----CT-TGGGCTTCSEEEEESC----CCSCCG-GG-TTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred cCCccEEeccCCCccC-----hH-HHhcCCCCCEEEccCC----CCCcch-hh-hcCCCCCEEEeECCccCcccChhhcC
Confidence 5667777777665431 12 4667777778888777 666554 45 777778888887776664 5667777
Q ss_pred cccccceeccccccccCCcccchhcCCCCCCCeEEEeccC-CcccchhhhcccccCCCCCe-EEEEeec-CCCCCCcchh
Q 048216 477 VSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCT-EDILGRLLVQILILSCLESL-KLANESK-MPRRSNIILA 553 (654)
Q Consensus 477 L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~~~~~L-~L~l~~~-~~~lp~~~~~ 553 (654)
+++|++|++++ .+.....+..++++++|++|++++|. ...++ .+..++ +| .|+++++ +..+| .
T Consensus 111 l~~L~~L~Ls~---n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~------~l~~l~-~L~~L~l~~n~i~~~~----~ 176 (197)
T 4ezg_A 111 LTSLTLLDISH---SAHDDSILTKINTLPKVNSIDLSYNGAITDIM------PLKTLP-ELKSLNIQFDGVHDYR----G 176 (197)
T ss_dssp CTTCCEEECCS---SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG------GGGGCS-SCCEEECTTBCCCCCT----T
T ss_pred CCCCCEEEecC---CccCcHhHHHHhhCCCCCEEEccCCCCccccH------hhcCCC-CCCEEECCCCCCcChH----H
Confidence 77788777533 32233456677777788888887775 44442 355556 77 8888763 44555 4
Q ss_pred hhcCCCCccEEEEEeecc
Q 048216 554 EYQFPPSLTHLSFSNIEL 571 (654)
Q Consensus 554 ~~~lp~~L~~L~L~~~~l 571 (654)
+..+ ++|++|++++|++
T Consensus 177 l~~l-~~L~~L~l~~N~i 193 (197)
T 4ezg_A 177 IEDF-PKLNQLYAFSQTI 193 (197)
T ss_dssp GGGC-SSCCEEEECBC--
T ss_pred hccC-CCCCEEEeeCccc
Confidence 6778 8999999998875
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.20 E-value=1.1e-12 Score=142.41 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=83.0
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCC-----cCChhHHhcCCCceEEcCCCcccccc-C
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLK-----SLPSSLLSSLLNLYTLDMPFSYIDHT-A 471 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~-----~lP~~if~~L~~L~~L~L~~~~l~~l-P 471 (654)
.+++++|.+.++... .......+..+++|++|+|++| .+. .+|..+ ..+++|++|++++|.+... +
T Consensus 2 ~~~l~~L~Ls~~~l~---~~~~~~~~~~~~~L~~L~L~~~----~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDC----GLTEARCKDISSAL-RVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp CEEEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESS----CCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHH
T ss_pred CccceehhhhhcccC---chhHHHHHhhcCCccEEEccCC----CCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHH
Confidence 357888999877653 3344556899999999999999 776 567777 9999999999999977652 3
Q ss_pred hhh-hccc----cccceeccccccccCC----cccchhcCCCCCCCeEEEeccCCc
Q 048216 472 DEF-WKVS----KLRYLNFGAITLPAHP----GKYCNSLENLNFISALHHCYCTED 518 (654)
Q Consensus 472 ~~i-~~L~----~L~~L~l~~l~~l~~~----~~l~~~l~~l~~L~~L~l~~~~~~ 518 (654)
..+ ..+. +|++|++++ +... ..++..+.++++|++|++++|...
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~---n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQN---CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTT---SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHHHhhCCCceeEEEccC---CCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 333 3455 699999654 3211 356888999999999999988643
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=5.6e-11 Score=115.57 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=82.6
Q ss_pred eEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccCh-hhhccccccceeccccccccCCcccchhcCCCCCCC
Q 048216 430 RVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFIS 508 (654)
Q Consensus 430 r~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~ 508 (654)
+.++++++ .+.++|..+ . .+|+.|++++|.+..+|. .+..+++|++|++++ .+.....|..+.++++|+
T Consensus 14 ~~v~c~~~----~l~~iP~~l-~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~---N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 14 NIVDCRGK----GLTEIPTNL-P--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN---NQISELAPDAFQGLRSLN 83 (220)
T ss_dssp TEEECTTS----CCSSCCSSC-C--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS---SCCCEECTTTTTTCSSCC
T ss_pred CEEEcCCC----CcCcCCCcc-C--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC---CcCCCcCHHHhhCCcCCC
Confidence 44555555 555565544 2 455666666665555544 455556666666432 211122245555666666
Q ss_pred eEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCC-CCcchhhhcCCCCccEEEEEeeccCCCCccccccCccc
Q 048216 509 ALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRR-SNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVL 585 (654)
Q Consensus 509 ~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~l-p~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L 585 (654)
+|++++|....+| ...+..++ +| .|++++ .+..+ |. .+..+ ++|++|+|++|.+.......+..+++|
T Consensus 84 ~L~Ls~N~l~~l~----~~~f~~l~-~L~~L~L~~N~l~~~~~~---~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 84 SLVLYGNKITELP----KSLFEGLF-SLQLLLLNANKINCLRVD---AFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp EEECCSSCCCCCC----TTTTTTCT-TCCEEECCSSCCCCCCTT---TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred EEECCCCcCCccC----HhHccCCC-CCCEEECCCCCCCEeCHH---HcCCC-CCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 6666665544442 12233444 55 566554 23333 34 56667 788888888887766555567778888
Q ss_pred ceEEEeeccc
Q 048216 586 QVLKLKQNSY 595 (654)
Q Consensus 586 ~~L~L~~~~~ 595 (654)
+.|+|++|.+
T Consensus 155 ~~L~L~~N~~ 164 (220)
T 2v9t_B 155 QTMHLAQNPF 164 (220)
T ss_dssp CEEECCSSCE
T ss_pred CEEEeCCCCc
Confidence 8888875543
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.16 E-value=8e-11 Score=114.45 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=75.3
Q ss_pred EEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccCh--hhhccccccceeccccccccCCcccc-hhcCCCCCC
Q 048216 431 VLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTAD--EFWKVSKLRYLNFGAITLPAHPGKYC-NSLENLNFI 507 (654)
Q Consensus 431 ~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~L 507 (654)
.++++++ .++.+|..+ . ..+++|+|++|.+..+|. .+.++++|++|++++ . ....++ ..+.++++|
T Consensus 15 ~l~~s~n----~l~~iP~~~-~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~---N-~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 15 TVDCSNQ----KLNKIPEHI-P--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN---N-KITDIEEGAFEGASGV 83 (220)
T ss_dssp EEECCSS----CCSSCCSCC-C--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS---S-CCCEECTTTTTTCTTC
T ss_pred EeEeCCC----CcccCccCC-C--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC---C-cCCEECHHHhCCCCCC
Confidence 4555555 455555444 2 234555555555555422 245555555555322 1 112222 245555555
Q ss_pred CeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCC-CCcchhhhcCCCCccEEEEEeeccCCCCccccccCcc
Q 048216 508 SALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRR-SNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPV 584 (654)
Q Consensus 508 ~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~l-p~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~ 584 (654)
++|++++|....++ ...+..++ +| .|++++ .+..+ |. .+..+ ++|++|+|++|.+.......+..+++
T Consensus 84 ~~L~Ls~N~l~~~~----~~~~~~l~-~L~~L~Ls~N~l~~~~~~---~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 84 NEILLTSNRLENVQ----HKMFKGLE-SLKTLMLRSNRITCVGND---SFIGL-SSVRLLSLYDNQITTVAPGAFDTLHS 154 (220)
T ss_dssp CEEECCSSCCCCCC----GGGGTTCS-SCCEEECTTSCCCCBCTT---SSTTC-TTCSEEECTTSCCCCBCTTTTTTCTT
T ss_pred CEEECCCCccCccC----HhHhcCCc-CCCEEECCCCcCCeECHh---HcCCC-ccCCEEECCCCcCCEECHHHhcCCCC
Confidence 55555555444331 22334444 55 555554 23333 34 55566 77777777777765555556777777
Q ss_pred cceEEEeeccc
Q 048216 585 LQVLKLKQNSY 595 (654)
Q Consensus 585 L~~L~L~~~~~ 595 (654)
|+.|+|++|.+
T Consensus 155 L~~L~L~~N~l 165 (220)
T 2v70_A 155 LSTLNLLANPF 165 (220)
T ss_dssp CCEEECCSCCE
T ss_pred CCEEEecCcCC
Confidence 77777775543
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.15 E-value=3.2e-11 Score=126.65 Aligned_cols=128 Identities=14% Similarity=0.047 Sum_probs=75.2
Q ss_pred EEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhc-ccceeeEEecCCCCCCCCCCcCChhHHhcCCCceE
Q 048216 381 RFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICK-MFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYT 459 (654)
Q Consensus 381 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~ 459 (654)
.+... +.....+|..+.+.++.|.+.++... .+.+..|. ++++|++|+|++| .|..+|...|+++++|++
T Consensus 22 ~l~c~-~~~l~~iP~~~~~~l~~L~Ls~N~l~----~l~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 22 ILSCS-KQQLPNVPQSLPSYTALLDLSHNNLS----RLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp EEECC-SSCCSSCCSSCCTTCSEEECCSSCCC----EECTTSSSSCCTTCCEEECCSS----CCCEECTTTTTTCTTCCE
T ss_pred EEEeC-CCCcCccCccCCCCCCEEECCCCCCC----ccChhhhhhcccccCEEECCCC----cCCccChhhccCCCCCCE
Confidence 34444 33333355444556777777766553 23344455 6777777777777 666666543477777777
Q ss_pred EcCCCccccccCh-hhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCccc
Q 048216 460 LDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDIL 520 (654)
Q Consensus 460 L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 520 (654)
|+|++|.+..+|. .+..+.+|++|++++ .+.....+..+.++++|+.|++++|....+
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~---N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYN---NHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCS---SCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCC---CcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 7777777666654 366677777777533 211122245566667777777776655444
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.14 E-value=1.3e-10 Score=113.68 Aligned_cols=150 Identities=17% Similarity=0.122 Sum_probs=114.5
Q ss_pred EEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEc
Q 048216 382 FTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLD 461 (654)
Q Consensus 382 lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~ 461 (654)
+... +.....++..+.++|+.|.+.++... .+.+..|.++++|++|+|++| .+..+|...|+.+++|++|+
T Consensus 24 v~c~-~~~l~~ip~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N----~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 24 VDCR-SKRHASVPAGIPTNAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSN----QLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp EECT-TSCCSSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEE
T ss_pred eEcc-CCCcCccCCCCCCCCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCC----CCCCcChhhcccCCCcCEEE
Confidence 4444 33344466555889999999998875 245677899999999999999 89999988779999999999
Q ss_pred CCCccccccChh-hhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCeEEEE
Q 048216 462 MPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESLKLAN 540 (654)
Q Consensus 462 L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~L~l 540 (654)
|++|.+..+|.. +..+++|++|++++ . ....+|..+.++++|+.|++++|....++
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~---N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~------------------- 151 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCC---N-KLTELPRGIERLTHLTHLALDQNQLKSIP------------------- 151 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCS---S-CCCSCCTTGGGCTTCSEEECCSSCCCCCC-------------------
T ss_pred CCCCcCCccChhHhCcchhhCeEeccC---C-cccccCcccccCCCCCEEECCCCcCCccC-------------------
Confidence 999999998765 58899999999654 2 34577888888999999999887433331
Q ss_pred eecCCCCCCcchhhhcCCCCccEEEEEeeccCCC
Q 048216 541 ESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDD 574 (654)
Q Consensus 541 ~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~ 574 (654)
+. .+..+ ++|+.|+|++|.+.+.
T Consensus 152 -------~~---~~~~l-~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 152 -------HG---AFDRL-SSLTHAYLFGNPWDCE 174 (229)
T ss_dssp -------TT---TTTTC-TTCCEEECTTSCBCTT
T ss_pred -------HH---HHhCC-CCCCEEEeeCCCccCC
Confidence 11 34556 7777888877776543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=9.6e-13 Score=146.29 Aligned_cols=188 Identities=17% Similarity=0.107 Sum_probs=142.1
Q ss_pred hcCCCceEEcCCCccccccChhhhccccccceeccc----------cccccCCcccchhcCCCCCCCeEE-EeccCCccc
Q 048216 452 SSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGA----------ITLPAHPGKYCNSLENLNFISALH-HCYCTEDIL 520 (654)
Q Consensus 452 ~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~----------l~~l~~~~~l~~~l~~l~~L~~L~-l~~~~~~~~ 520 (654)
..+++|+.|+|++|.++.+|.+|++|++|+.|++++ +..+......|..++++++|+.|+ ++.+....+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 568899999999999999999999999999999754 111123455677888889999888 554422222
Q ss_pred chh----hhcccccCCCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecc
Q 048216 521 GRL----LVQILILSCLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNS 594 (654)
Q Consensus 521 ~~~----~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~ 594 (654)
+.. ..+..+. .. .| .|.+++ .+..+|. +..+ ++|+.|+|++|.+. ..+..++++++|+.|+|++|.
T Consensus 426 ~~l~l~~n~i~~l~-~~-~L~~L~Ls~n~l~~lp~----~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 426 RSKFLLENSVLKME-YA-DVRVLHLAHKDLTVLCH----LEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp HHHHHHHHHHHHHH-HT-TCSEEECTTSCCSSCCC----GGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred hhhhhhcccccccC-cc-CceEEEecCCCCCCCcC----cccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 100 0122222 23 68 999987 4567884 7788 99999999999986 445679999999999999776
Q ss_pred cCCCeeEEcCCCCccccEEEEecCCCCcce--eEcCccccccceeeeecCcCCccccccc
Q 048216 595 YSGRKLACSSDGFPKLKVLHLKSMLWLEEW--TMGIRAMPKLECLIINPCAHLKGFLNSF 652 (654)
Q Consensus 595 ~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l--~~~~~~~p~L~~L~i~~C~~L~~lP~~l 652 (654)
..+ ++ ..+.+++|+.|++++ +.+..+ |...+.+++|+.|++++| .+..+|+.+
T Consensus 498 l~~--lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~ 552 (567)
T 1dce_A 498 LEN--VD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQ 552 (567)
T ss_dssp CCC--CG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCT
T ss_pred CCC--Cc-ccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHH
Confidence 654 44 667899999999998 578887 677788999999999997 677777643
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.11 E-value=2.3e-10 Score=126.70 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=124.1
Q ss_pred ceeEEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCc
Q 048216 378 NVKRFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNL 457 (654)
Q Consensus 378 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L 457 (654)
+++.+.+. ++....++..+.++|++|.+.++.... + + ..+++|++|+|++| .+..+|. + ++ +|
T Consensus 60 ~L~~L~Ls-~n~L~~lp~~l~~~L~~L~Ls~N~l~~----i-p---~~l~~L~~L~Ls~N----~l~~ip~-l-~~--~L 122 (571)
T 3cvr_A 60 QFSELQLN-RLNLSSLPDNLPPQITVLEITQNALIS----L-P---ELPASLEYLDACDN----RLSTLPE-L-PA--SL 122 (571)
T ss_dssp TCSEEECC-SSCCSCCCSCCCTTCSEEECCSSCCSC----C-C---CCCTTCCEEECCSS----CCSCCCC-C-CT--TC
T ss_pred CccEEEeC-CCCCCccCHhHcCCCCEEECcCCCCcc----c-c---cccCCCCEEEccCC----CCCCcch-h-hc--CC
Confidence 57777777 444444555557889999998887642 2 2 45788999999999 7888888 6 66 89
Q ss_pred eEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-
Q 048216 458 YTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL- 536 (654)
Q Consensus 458 ~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L- 536 (654)
++|++++|.+..+|. .+++|++|++++ . ....+|. .+++|++|++++|....+| . +. + +|
T Consensus 123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~---N-~l~~lp~---~l~~L~~L~Ls~N~L~~lp---~---l~--~-~L~ 183 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE---LPALLEYINADN---N-QLTMLPE---LPTSLEVLSVRNNQLTFLP---E---LP--E-SLE 183 (571)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCS---S-CCSCCCC---CCTTCCEEECCSSCCSCCC---C---CC--T-TCC
T ss_pred CEEECCCCcCCCCCC---cCccccEEeCCC---C-ccCcCCC---cCCCcCEEECCCCCCCCcc---h---hh--C-CCC
Confidence 999999998888887 688899998654 2 2333554 5678999999988776665 2 32 4 88
Q ss_pred EEEEeec-CCCCCCcchhhhcCCCCc-------cEEEEEeeccCCCCccccccCcccceEEEeeccc
Q 048216 537 KLANESK-MPRRSNIILAEYQFPPSL-------THLSFSNIELMDDPMPALEKLPVLQVLKLKQNSY 595 (654)
Q Consensus 537 ~L~l~~~-~~~lp~~~~~~~~lp~~L-------~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~ 595 (654)
.|+++++ +..+|. ++.+| +.|+|++|.++. .++.+.++++|+.|+|++|..
T Consensus 184 ~L~Ls~N~L~~lp~-------~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 184 ALDVSTNLLESLPA-------VPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEECCSSCCSSCCC-------CC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSC
T ss_pred EEECcCCCCCchhh-------HHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcC
Confidence 8998874 456663 22355 889999988753 334467788999999986654
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.10 E-value=4.9e-12 Score=142.02 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=9.5
Q ss_pred ccccceeeeecCc
Q 048216 631 MPKLECLIINPCA 643 (654)
Q Consensus 631 ~p~L~~L~i~~C~ 643 (654)
+++|+.|++++|.
T Consensus 455 ~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 455 AKKMEMLSVAFAG 467 (594)
T ss_dssp CTTCCEEEEESCC
T ss_pred chhccEeeccCCC
Confidence 6778888887764
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=1e-10 Score=122.84 Aligned_cols=151 Identities=23% Similarity=0.279 Sum_probs=113.2
Q ss_pred ceeeEEecCCCCCCCCCCcCChhHHh-cCCCceEEcCCCccccccCh-hhhccccccceeccccccccCCcccc-hhcCC
Q 048216 427 KFLRVLNLGSLLNIPSLKSLPSSLLS-SLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYC-NSLEN 503 (654)
Q Consensus 427 ~~Lr~L~L~~~~~lp~i~~lP~~if~-~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~ 503 (654)
+.+++|+|++| .+..+|...|. ++.+|++|+|++|.+..+|. .+.++++|++|++++ . ....++ ..+.+
T Consensus 39 ~~l~~L~Ls~N----~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~---N-~l~~~~~~~~~~ 110 (361)
T 2xot_A 39 SYTALLDLSHN----NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS---N-HLHTLDEFLFSD 110 (361)
T ss_dssp TTCSEEECCSS----CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS---S-CCCEECTTTTTT
T ss_pred CCCCEEECCCC----CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC---C-cCCcCCHHHhCC
Confidence 34788999999 88888877656 89999999999998888864 588899999999654 2 233343 45788
Q ss_pred CCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEee-cCCCCCCcchhh----hcCCCCccEEEEEeeccCCCCcc
Q 048216 504 LNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANES-KMPRRSNIILAE----YQFPPSLTHLSFSNIELMDDPMP 577 (654)
Q Consensus 504 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~-~~~~lp~~~~~~----~~lp~~L~~L~L~~~~l~~~~l~ 577 (654)
+++|+.|++++|....+ ....+..++ +| .|++++ .+..+|. .+ ..+ ++|+.|+|++|.+...+..
T Consensus 111 l~~L~~L~L~~N~i~~~----~~~~~~~l~-~L~~L~L~~N~l~~l~~---~~~~~~~~l-~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVV----DRNAFEDMA-QLQKLYLSQNQISRFPV---ELIKDGNKL-PKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp CTTCCEEECCSSCCCEE----CTTTTTTCT-TCCEEECCSSCCCSCCG---GGTC----C-TTCCEEECCSSCCCCCCHH
T ss_pred CcCCCEEECCCCcccEE----CHHHhCCcc-cCCEEECCCCcCCeeCH---HHhcCcccC-CcCCEEECCCCCCCccCHH
Confidence 89999999998877665 335566677 88 999987 4567776 44 457 8999999999988665555
Q ss_pred ccccCcc--cceEEEeecc
Q 048216 578 ALEKLPV--LQVLKLKQNS 594 (654)
Q Consensus 578 ~l~~l~~--L~~L~L~~~~ 594 (654)
.+..++. |+.|+|.+|.
T Consensus 182 ~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHSCHHHHTTEECCSSC
T ss_pred HhhhccHhhcceEEecCCC
Confidence 6777776 4788888654
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.09 E-value=2.4e-10 Score=111.07 Aligned_cols=139 Identities=12% Similarity=0.106 Sum_probs=77.2
Q ss_pred ccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcC-ChhHHhcCCCceEEcCCCccccccC
Q 048216 393 FLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSL-PSSLLSSLLNLYTLDMPFSYIDHTA 471 (654)
Q Consensus 393 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~if~~L~~L~~L~L~~~~l~~lP 471 (654)
++..+.++++.|.+.++... .+.+..|..+++|++|+|++| .+..+ |..+ .++.+|++|+|++|.+..+|
T Consensus 26 iP~~l~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N----~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 26 IPTNLPETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNN----QISELAPDAF-QGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp CCSSCCTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSS----CCCEECTTTT-TTCSSCCEEECCSSCCCCCC
T ss_pred CCCccCcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCC----cCCCcCHHHh-hCCcCCCEEECCCCcCCccC
Confidence 44333556666666665543 233445666666666666666 55555 3333 66666666666666666666
Q ss_pred hh-hhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCeEEEEeecCCCCCCc
Q 048216 472 DE-FWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESLKLANESKMPRRSNI 550 (654)
Q Consensus 472 ~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~L~l~~~~~~lp~~ 550 (654)
.. +..+++|++|++++ .+.....+..+.++++|+.|++++|... .+|..
T Consensus 97 ~~~f~~l~~L~~L~L~~---N~l~~~~~~~~~~l~~L~~L~L~~N~l~---------------------------~~~~~ 146 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNA---NKINCLRVDAFQDLHNLNLLSLYDNKLQ---------------------------TIAKG 146 (220)
T ss_dssp TTTTTTCTTCCEEECCS---SCCCCCCTTTTTTCTTCCEEECCSSCCS---------------------------CCCTT
T ss_pred HhHccCCCCCCEEECCC---CCCCEeCHHHcCCCCCCCEEECCCCcCC---------------------------EECHH
Confidence 54 35566666666432 2111222344555556666666555322 22220
Q ss_pred chhhhcCCCCccEEEEEeeccCC
Q 048216 551 ILAEYQFPPSLTHLSFSNIELMD 573 (654)
Q Consensus 551 ~~~~~~lp~~L~~L~L~~~~l~~ 573 (654)
.+..+ ++|++|+|++|.+.+
T Consensus 147 --~~~~l-~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 147 --TFSPL-RAIQTMHLAQNPFIC 166 (220)
T ss_dssp --TTTTC-TTCCEEECCSSCEEC
T ss_pred --HHhCC-CCCCEEEeCCCCcCC
Confidence 35556 778888888777644
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.07 E-value=3e-10 Score=110.37 Aligned_cols=153 Identities=10% Similarity=0.056 Sum_probs=79.7
Q ss_pred EEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEE
Q 048216 381 RFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTL 460 (654)
Q Consensus 381 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L 460 (654)
.+.+. ++....++..+.+.++.|.+.++.... ......|.++++|++|+|++| .|..+|...|+++.+|++|
T Consensus 15 ~l~~s-~n~l~~iP~~~~~~~~~L~L~~N~l~~---~~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 15 TVDCS-NQKLNKIPEHIPQYTAELRLNNNEFTV---LEATGIFKKLPQLRKINFSNN----KITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp EEECC-SSCCSSCCSCCCTTCSEEECCSSCCCE---ECCCCCGGGCTTCCEEECCSS----CCCEECTTTTTTCTTCCEE
T ss_pred EeEeC-CCCcccCccCCCCCCCEEEcCCCcCCc---cCchhhhccCCCCCEEECCCC----cCCEECHHHhCCCCCCCEE
Confidence 34444 333333444344455566665555431 011233556666666666666 5555555333666666666
Q ss_pred cCCCccccccChh-hhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCeEEE
Q 048216 461 DMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESLKLA 539 (654)
Q Consensus 461 ~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~L~ 539 (654)
+|++|.+..+|.. +..+++|++|++++ .+.....|..+.++++|+.|++++|....+
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~---N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------- 144 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRS---NRITCVGNDSFIGLSSVRLLSLYDNQITTV------------------- 144 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTT---SCCCCBCTTSSTTCTTCSEEECTTSCCCCB-------------------
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCC---CcCCeECHhHcCCCccCCEEECCCCcCCEE-------------------
Confidence 6666666555443 55566666666432 111112234455555555555555422222
Q ss_pred EeecCCCCCCcchhhhcCCCCccEEEEEeeccCCC
Q 048216 540 NESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDD 574 (654)
Q Consensus 540 l~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~ 574 (654)
.|. .+..+ ++|++|+|++|.+.++
T Consensus 145 -------~~~---~~~~l-~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 145 -------APG---AFDTL-HSLSTLNLLANPFNCN 168 (220)
T ss_dssp -------CTT---TTTTC-TTCCEEECCSCCEECS
T ss_pred -------CHH---HhcCC-CCCCEEEecCcCCcCC
Confidence 144 56667 8888888888876543
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=2.5e-11 Score=136.16 Aligned_cols=133 Identities=11% Similarity=0.096 Sum_probs=73.0
Q ss_pred CCCCCeEEEeccCCcccchhhhccccc-CCCCCe-EEEEe--e-----cCCCCCCc--ch-hhhcCCCCccEEEEEeecc
Q 048216 504 LNFISALHHCYCTEDILGRLLVQILIL-SCLESL-KLANE--S-----KMPRRSNI--IL-AEYQFPPSLTHLSFSNIEL 571 (654)
Q Consensus 504 l~~L~~L~l~~~~~~~~~~~~~l~~l~-~~~~~L-~L~l~--~-----~~~~lp~~--~~-~~~~lp~~L~~L~L~~~~l 571 (654)
+++|++|.+..+..... .+..+. .++ +| .|++. + .+...|.. +. .+..+ ++|++|+|++ .+
T Consensus 371 ~~~L~~L~~~~~~l~~~----~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~L~~L~L~~-~l 443 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNA----ALITIARNRP-NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC-KDLRRLSLSG-LL 443 (594)
T ss_dssp CTTCCEEEEEESCCCHH----HHHHHHHHCT-TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC-TTCCEEECCS-SC
T ss_pred chhHHHHHHhcCCcCHH----HHHHHHhhCC-CcceeEeecccCCCcccccCCchhhHHHHHHhhC-CCccEEeecC-cc
Confidence 56666665554433222 222222 245 77 77777 2 22323320 00 13456 7788888765 44
Q ss_pred CCCCcccccc-CcccceEEEeecccCCCeeEEcCCCCccccEEEEecCCCCcceeE--cCccccccceeeeecCcC
Q 048216 572 MDDPMPALEK-LPVLQVLKLKQNSYSGRKLACSSDGFPKLKVLHLKSMLWLEEWTM--GIRAMPKLECLIINPCAH 644 (654)
Q Consensus 572 ~~~~l~~l~~-l~~L~~L~L~~~~~~~~~l~~~~~~f~~L~~L~l~~~~~l~~l~~--~~~~~p~L~~L~i~~C~~ 644 (654)
....++.++. +++|+.|+|++|......+.....++++|++|++++|+. ..... ....+|+|+.|++++|+.
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4444444554 778888888855432222211113478888888888764 33221 234578899999988865
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=4.7e-11 Score=108.32 Aligned_cols=130 Identities=16% Similarity=0.067 Sum_probs=84.0
Q ss_pred cccceeeEEecCCCCCCCCCC--cCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhc
Q 048216 424 KMFKFLRVLNLGSLLNIPSLK--SLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSL 501 (654)
Q Consensus 424 ~~l~~Lr~L~L~~~~~lp~i~--~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l 501 (654)
...++|+.|++++| .+. .+|..+ +.+++|++|++++|.+..+ ..++++++|++|++++ ......+|..+
T Consensus 14 ~~~~~l~~L~l~~n----~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~---n~i~~~~~~~~ 84 (149)
T 2je0_A 14 RTPSDVKELVLDNS----RSNEGKLEGLT-DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD---NRVSGGLEVLA 84 (149)
T ss_dssp CCGGGCSEEECTTC----BCBTTBCCSCC-TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCS---SCCCSCTHHHH
T ss_pred CCCccCeEEEccCC----cCChhHHHHHH-hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCC---CcccchHHHHh
Confidence 34567888888888 676 788776 8888888888888877777 6677788888888543 32222256666
Q ss_pred CCCCCCCeEEEeccCCcccchhhhcccccCCCCCeEEEEeecCCCCCCcchhhhcCCCCccEEEEEeeccCCCCc---cc
Q 048216 502 ENLNFISALHHCYCTEDILGRLLVQILILSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPM---PA 578 (654)
Q Consensus 502 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~L~l~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l---~~ 578 (654)
.++++|++|++++|....++ .+ . .+..+ ++|++|++++|.+..... ..
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~---~~----------------------~---~~~~l-~~L~~L~l~~N~l~~~~~~~~~~ 135 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLS---TI----------------------E---PLKKL-ENLKSLDLFNCEVTNLNDYRENV 135 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHH---HH----------------------G---GGGGC-TTCCEEECTTCGGGGSTTHHHHH
T ss_pred hhCCCCCEEECCCCcCCChH---HH----------------------H---HHhhC-CCCCEEeCcCCcccchHHHHHHH
Confidence 66777777777776433321 11 1 44455 666777777666543332 24
Q ss_pred cccCcccceEEEe
Q 048216 579 LEKLPVLQVLKLK 591 (654)
Q Consensus 579 l~~l~~L~~L~L~ 591 (654)
+..+++|++|+++
T Consensus 136 ~~~l~~L~~L~l~ 148 (149)
T 2je0_A 136 FKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEETTB
T ss_pred HHHCCCcccccCC
Confidence 5666677666654
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.03 E-value=1.9e-10 Score=106.61 Aligned_cols=86 Identities=16% Similarity=0.049 Sum_probs=56.3
Q ss_pred ccceeeEEecCCCCCCCCCC--cCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcC
Q 048216 425 MFKFLRVLNLGSLLNIPSLK--SLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLE 502 (654)
Q Consensus 425 ~l~~Lr~L~L~~~~~lp~i~--~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~ 502 (654)
..+.|+.|+|++| .+. .+|..+ +.+++|++|++++|.+..+ ..+..+++|++|++++ .+....+|..+.
T Consensus 22 ~~~~L~~L~l~~n----~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~---N~l~~~~~~~~~ 92 (168)
T 2ell_A 22 TPAAVRELVLDNC----KSNDGKIEGLT-AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE---NRIFGGLDMLAE 92 (168)
T ss_dssp CTTSCSEEECCSC----BCBTTBCSSCC-GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEES---CCCCSCCCHHHH
T ss_pred CcccCCEEECCCC----CCChhhHHHHH-HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcC---CcCchHHHHHHh
Confidence 3466777777777 666 777766 7777777777777777666 5667777777777533 222222555556
Q ss_pred CCCCCCeEEEeccCCcc
Q 048216 503 NLNFISALHHCYCTEDI 519 (654)
Q Consensus 503 ~l~~L~~L~l~~~~~~~ 519 (654)
++++|++|++++|....
T Consensus 93 ~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp HCTTCCEEECBSSSCCS
T ss_pred hCCCCCEEeccCCccCc
Confidence 67777777777764433
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=8e-10 Score=104.89 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=58.5
Q ss_pred eEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChh--hhccccccceeccccccccCCcccchhcCCCCCC
Q 048216 430 RVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADE--FWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFI 507 (654)
Q Consensus 430 r~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~--i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L 507 (654)
++++++++ .++++|..+ .. +|++|++++|.+..+|.. ++++++|++|++++ .+.....|..+.++++|
T Consensus 11 ~~l~~s~~----~l~~ip~~~-~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~---N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGR----GLKEIPRDI-PL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR---NQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTS----CCSSCCSCC-CT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS---SCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCC----CcCcCccCC-CC--CCCEEECCCCcCCccCCccccccCCCCCEEECCC---CCCCCcCHhHcCCcccC
Confidence 67888888 788888776 43 888888888888887764 78888888888543 22223336677888888
Q ss_pred CeEEEeccCCccc
Q 048216 508 SALHHCYCTEDIL 520 (654)
Q Consensus 508 ~~L~l~~~~~~~~ 520 (654)
++|++++|....+
T Consensus 81 ~~L~Ls~N~l~~~ 93 (192)
T 1w8a_A 81 QELQLGENKIKEI 93 (192)
T ss_dssp CEEECCSCCCCEE
T ss_pred CEEECCCCcCCcc
Confidence 8888888755444
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=7.2e-11 Score=135.26 Aligned_cols=108 Identities=21% Similarity=0.172 Sum_probs=93.8
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcc
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKV 477 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L 477 (654)
+++|+.|.+.++.... ++..+.++++|++|+|++| .|..+|.++ ++|.+|++|+|++|.+..+|..+++|
T Consensus 223 l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N----~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGN----SLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp CCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTS----CCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred CCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCC----cCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCC
Confidence 7899999999887652 3334458999999999999 899999999 99999999999999999999999999
Q ss_pred ccccceeccccccccCCcccchhcCCCCCCCeEEEeccCCcc
Q 048216 478 SKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCTEDI 519 (654)
Q Consensus 478 ~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 519 (654)
++|++|+|++ . ....+|..++++++|+.|+|++|....
T Consensus 293 ~~L~~L~L~~---N-~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 293 FQLKYFYFFD---N-MVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTCSEEECCS---S-CCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCEEECCC---C-CCCccChhhhcCCCccEEeCCCCccCC
Confidence 9999999654 3 345789899999999999999997653
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=103.16 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=56.1
Q ss_pred eEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccchhcCCCCCCCe
Q 048216 430 RVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISA 509 (654)
Q Consensus 430 r~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~ 509 (654)
++++++++ .+.++|..+ . .+|++|++++|.+..+|..+.++++|++|++++ .......+..+.++++|++
T Consensus 13 ~~l~~~~~----~l~~ip~~~-~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~---N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNK----GLKVLPKGI-P--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN---NRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTS----CCSSCCSCC-C--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS---SCCCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCC----CCCcCCCCC-C--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC---CcCCEeCHhHccCCCCCCE
Confidence 57788888 778888766 2 578888888888888888888888888888543 2112222345777788888
Q ss_pred EEEeccCCccc
Q 048216 510 LHHCYCTEDIL 520 (654)
Q Consensus 510 L~l~~~~~~~~ 520 (654)
|++++|....+
T Consensus 83 L~Ls~N~l~~i 93 (193)
T 2wfh_A 83 LILSYNRLRCI 93 (193)
T ss_dssp EECCSSCCCBC
T ss_pred EECCCCccCEe
Confidence 88877744433
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.96 E-value=1.3e-09 Score=100.87 Aligned_cols=129 Identities=13% Similarity=0.037 Sum_probs=82.6
Q ss_pred cCceeEEEEecCCCCc--cccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCc-CChhH
Q 048216 376 RENVKRFTAHEKLNDF--GFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKS-LPSSL 450 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~--~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~-lP~~i 450 (654)
+.+++++.+. ++... .++..+ +++|+.|.+.++.... . ..+..+++|++|+|++| .+.. +|..+
T Consensus 23 ~~~L~~L~l~-~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~N----~l~~~~~~~~ 91 (168)
T 2ell_A 23 PAAVRELVLD-NCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----V--SNLPKLPKLKKLELSEN----RIFGGLDMLA 91 (168)
T ss_dssp TTSCSEEECC-SCBCBTTBCSSCCGGGGGCCEEEEESSCCCC----C--SSCCCCSSCCEEEEESC----CCCSCCCHHH
T ss_pred cccCCEEECC-CCCCChhhHHHHHHhCCCCCEEeCcCCCCCC----h--hhhccCCCCCEEECcCC----cCchHHHHHH
Confidence 4567777777 43332 455444 7777777777776542 1 55677777777777777 6666 55554
Q ss_pred HhcCCCceEEcCCCccccccC--hhhhccccccceeccccccccCCcccch----hcCCCCCCCeEEEeccCCccc
Q 048216 451 LSSLLNLYTLDMPFSYIDHTA--DEFWKVSKLRYLNFGAITLPAHPGKYCN----SLENLNFISALHHCYCTEDIL 520 (654)
Q Consensus 451 f~~L~~L~~L~L~~~~l~~lP--~~i~~L~~L~~L~l~~l~~l~~~~~l~~----~l~~l~~L~~L~l~~~~~~~~ 520 (654)
+++++|++|++++|.+..+| ..+..+++|++|++++ . ....+|. .+..+++|++|+++.|....+
T Consensus 92 -~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~---N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 92 -EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN---C-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp -HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS---S-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred -hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC---C-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 67777777777777777765 5677777777777543 2 1223333 566777777777777655444
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=7.2e-10 Score=103.55 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=57.7
Q ss_pred hcccceeeEEecCCCCCCCCCCcCChhHHhcCC-CceEEcCCCccccccChhhhccccccceeccccccccCCcccchhc
Q 048216 423 CKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLL-NLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCNSL 501 (654)
Q Consensus 423 ~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~-~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~~l 501 (654)
+..+..|+.|++++| .+..+|. + ..+. +|++|++++|.+..+ ..+.++++|++|++++ . ....+|..+
T Consensus 15 ~~~~~~L~~L~l~~n----~l~~i~~-~-~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~---N-~l~~~~~~~ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY----KIPVIEN-L-GATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN---N-RICRIGEGL 83 (176)
T ss_dssp EECTTSCEEEECTTS----CCCSCCC-G-GGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS---S-CCCEECSCH
T ss_pred cCCcCCceEEEeeCC----CCchhHH-h-hhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC---C-cccccCcch
Confidence 456677888888888 6777764 4 4544 888888888877777 4677777777777543 2 233444433
Q ss_pred -CCCCCCCeEEEeccCCccc
Q 048216 502 -ENLNFISALHHCYCTEDIL 520 (654)
Q Consensus 502 -~~l~~L~~L~l~~~~~~~~ 520 (654)
..+++|++|++++|....+
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~ 103 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVEL 103 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCG
T ss_pred hhcCCCCCEEECCCCcCCcc
Confidence 6677777777777754444
No 131
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.90 E-value=2.2e-09 Score=114.51 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=81.1
Q ss_pred CCceechhhHHHHHHHH-hc--CC--CCcEEEEE--EcCCCchHHHHHHHHHcccccc---CCcc-eeEEEEeCCCCCHH
Q 048216 101 RDTVGLDNRIEELLDLL-IE--GP--PQLSVVAV--LDSIGLDKTAFAAEAYNSNYVK---HYFD-CRAWVQESLPYDAD 169 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 169 (654)
..++||++++++|.++| .. .+ ...+.+.| +|++|+||||||+++++..... ..|+ ..+|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999998 42 11 23445555 9999999999999999842211 1122 35677776778899
Q ss_pred HHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHc--CCceEEEeccccC
Q 048216 170 QLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVM--TKRYLIVLDNFEN 218 (654)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LiVLDDvw~ 218 (654)
.++..++.+++.... ....+... +...+.+.+. +++++|||||+|.
T Consensus 102 ~~~~~l~~~l~~~~~-~~~~~~~~--~~~~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQ-VRGAPALD--ILKALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp HHHHHHHHHHTCCCC-CTTCCHHH--HHHHHHHHHHHHTCEEEEEEESTHH
T ss_pred HHHHHHHHHhCCCCC-CCCCCHHH--HHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 999999999976432 11222233 5666666665 7899999999965
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=4.4e-11 Score=114.23 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=51.0
Q ss_pred hcccceeeEEecCCCCC---CCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccch
Q 048216 423 CKMFKFLRVLNLGSLLN---IPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYCN 499 (654)
Q Consensus 423 ~~~l~~Lr~L~L~~~~~---lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~~ 499 (654)
+.....++.++++.+.+ +|.++++|..+ +++++|++|++++|.+..+| .+.++++|++|++++ . ....+|.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~---n-~l~~l~~ 87 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR---N-LIKKIEN 87 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEE---E-EECSCSS
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCC---C-Ccccccc
Confidence 34444444445544433 33555666666 77777777777777666666 666677777776543 1 2224455
Q ss_pred hcCCCCCCCeEEEeccCC
Q 048216 500 SLENLNFISALHHCYCTE 517 (654)
Q Consensus 500 ~l~~l~~L~~L~l~~~~~ 517 (654)
.+..+++|++|++++|..
T Consensus 88 ~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQI 105 (198)
T ss_dssp HHHHHHHCSEEEEEEEEC
T ss_pred hhhcCCcCCEEECcCCcC
Confidence 555556666666666533
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.85 E-value=6.5e-09 Score=98.63 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=68.9
Q ss_pred CccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccc
Q 048216 390 DFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDH 469 (654)
Q Consensus 390 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~ 469 (654)
...++..+.++++.|.+.++... .++..|.++++|++|+|++| .|..+|...|.+|.+|++|+|++|.+..
T Consensus 22 l~~ip~~~~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N----~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 22 LKVLPKGIPRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNN----RISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp CSSCCSCCCTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCcCCCCCCCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCC----cCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 33344444566777777666553 22356667777777777777 6666665544777777777777776666
Q ss_pred cCh-hhhccccccceeccccccccCCcccch-hcCCCCCCCeEEEecc
Q 048216 470 TAD-EFWKVSKLRYLNFGAITLPAHPGKYCN-SLENLNFISALHHCYC 515 (654)
Q Consensus 470 lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~~-~l~~l~~L~~L~l~~~ 515 (654)
+|. .+..+++|++|++++ . ....+|. .+..+++|+.|++++|
T Consensus 93 i~~~~f~~l~~L~~L~L~~---N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHG---N-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCTTTTTTCTTCCEEECCS---S-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred eCHHHhCCCCCCCEEECCC---C-CCCeeChhhhhcCccccEEEeCCC
Confidence 654 466677777777533 1 2233333 3566666777766665
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.81 E-value=1e-08 Score=95.63 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=83.1
Q ss_pred EEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEE
Q 048216 381 RFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTL 460 (654)
Q Consensus 381 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L 460 (654)
.+.+. +.....++..+.++++.|.+.++... .+.+..|..+++|++|+|++| .+..+|...|+++.+|++|
T Consensus 11 ~l~~~-~~~l~~~p~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 11 EIRCN-SKGLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQN----QIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp EEECC-SSCCSSCCTTCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSS----CCCCCCTTTTTTCTTCCEE
T ss_pred EEEec-CCCCccCCCCCCCCCcEEEeCCCccc----EeCHHHhcCcccccEEECCCC----cceEeChhHccCCCccCEE
Confidence 34444 33333344444677888888777653 244456777888888888888 7777777655788888888
Q ss_pred cCCCccccccChh-hhccccccceeccccccccCCcccchh-cCCCCCCCeEEEeccCC
Q 048216 461 DMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYCNS-LENLNFISALHHCYCTE 517 (654)
Q Consensus 461 ~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~-l~~l~~L~~L~l~~~~~ 517 (654)
++++|.+..+|.. +.++++|++|++++ . ....+|.. +..+++|++|++++|..
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~---N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDT---N-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCS---S-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcC---C-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 8888888777765 57788888888543 2 22344443 46677888888877743
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.80 E-value=4.5e-09 Score=95.05 Aligned_cols=77 Identities=18% Similarity=0.145 Sum_probs=36.4
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCc-CChhHHhcCCCceEEcCCCccccccC--hhh
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKS-LPSSLLSSLLNLYTLDMPFSYIDHTA--DEF 474 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~-lP~~if~~L~~L~~L~L~~~~l~~lP--~~i 474 (654)
+++|+.|.+.++.... . ..+..+++|++|+|++| .+.. +|..+ +++++|++|++++|.+..+| ..+
T Consensus 41 l~~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~n----~i~~~~~~~~-~~l~~L~~L~ls~N~i~~~~~~~~~ 109 (149)
T 2je0_A 41 FEELEFLSTINVGLTS----I--ANLPKLNKLKKLELSDN----RVSGGLEVLA-EKCPNLTHLNLSGNKIKDLSTIEPL 109 (149)
T ss_dssp CTTCCEEECTTSCCCC----C--TTCCCCTTCCEEECCSS----CCCSCTHHHH-HHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred cCCCcEEECcCCCCCC----c--hhhhcCCCCCEEECCCC----cccchHHHHh-hhCCCCCEEECCCCcCCChHHHHHH
Confidence 4555555555444321 1 33444555555555555 4444 33333 44555555555555444433 444
Q ss_pred hccccccceec
Q 048216 475 WKVSKLRYLNF 485 (654)
Q Consensus 475 ~~L~~L~~L~l 485 (654)
+.+++|++|++
T Consensus 110 ~~l~~L~~L~l 120 (149)
T 2je0_A 110 KKLENLKSLDL 120 (149)
T ss_dssp GGCTTCCEEEC
T ss_pred hhCCCCCEEeC
Confidence 55555555553
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.80 E-value=4.7e-09 Score=97.95 Aligned_cols=127 Identities=9% Similarity=-0.013 Sum_probs=80.7
Q ss_pred cCceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhc
Q 048216 376 RENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSS 453 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~ 453 (654)
+.+++.+.+. ++....++... .++|+.|.+.++.... + ..+..+++|++|+|++| .+..+|..+|+.
T Consensus 18 ~~~L~~L~l~-~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~----~--~~l~~l~~L~~L~Ls~N----~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIRK----L--DGFPLLRRLKTLLVNNN----RICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECT-TSCCCSCCCGGGGTTCCSEEECCSSCCCE----E--CCCCCCSSCCEEECCSS----CCCEECSCHHHH
T ss_pred cCCceEEEee-CCCCchhHHhhhcCCCCCEEECCCCCCCc----c--cccccCCCCCEEECCCC----cccccCcchhhc
Confidence 4566777776 44333343222 3477777777776541 1 45677777777777777 677777666677
Q ss_pred CCCceEEcCCCccccccCh--hhhccccccceeccccccccCCcccchh----cCCCCCCCeEEEeccCC
Q 048216 454 LLNLYTLDMPFSYIDHTAD--EFWKVSKLRYLNFGAITLPAHPGKYCNS----LENLNFISALHHCYCTE 517 (654)
Q Consensus 454 L~~L~~L~L~~~~l~~lP~--~i~~L~~L~~L~l~~l~~l~~~~~l~~~----l~~l~~L~~L~l~~~~~ 517 (654)
+++|++|++++|.+..+|. .+..+++|++|++++ . ....+|.. +..+++|+.|+++.|..
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~---N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR---N-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS---S-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC---C-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777777777777776 677777777777543 1 12233442 66677777777776643
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.78 E-value=8e-09 Score=97.88 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=74.8
Q ss_pred EEEEecCCCCccccccccCceeEEEEecCCCCCCChhhhH-hhhcccceeeEEecCCCCCCCCCCcC-ChhHHhcCCCce
Q 048216 381 RFTAHEKLNDFGFLDDFDSFLHSLLYLTSGSQYLDPTYCE-KICKMFKFLRVLNLGSLLNIPSLKSL-PSSLLSSLLNLY 458 (654)
Q Consensus 381 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~lp~i~~l-P~~if~~L~~L~ 458 (654)
.+.+. +.....++..+..+++.|.+.++.... +.+ ..|..+++|++|+|++| .+..+ |..+ +++.+|+
T Consensus 12 ~l~~s-~~~l~~ip~~~~~~l~~L~l~~n~i~~----~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~-~~l~~L~ 81 (192)
T 1w8a_A 12 TVDCT-GRGLKEIPRDIPLHTTELLLNDNELGR----ISSDGLFGRLPHLVKLELKRN----QLTGIEPNAF-EGASHIQ 81 (192)
T ss_dssp EEECT-TSCCSSCCSCCCTTCSEEECCSCCCCS----BCCSCSGGGCTTCCEEECCSS----CCCCBCTTTT-TTCTTCC
T ss_pred EEEcC-CCCcCcCccCCCCCCCEEECCCCcCCc----cCCccccccCCCCCEEECCCC----CCCCcCHhHc-CCcccCC
Confidence 44444 333344555445577777777765531 222 24677777777777777 66666 3444 7777777
Q ss_pred EEcCCCccccccChh-hhccccccceeccccccccCCcccchhcCCCCCCCeEEEeccC
Q 048216 459 TLDMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYCNSLENLNFISALHHCYCT 516 (654)
Q Consensus 459 ~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~l~~l~~L~~L~l~~~~ 516 (654)
+|+|++|.+..+|.. +..+++|++|++++ .+.....|..+..+++|++|++++|.
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~---N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYD---NQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCS---SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCC---CcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 777777777766543 66777777777533 22222335666677777777777663
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.76 E-value=3.6e-10 Score=107.80 Aligned_cols=91 Identities=16% Similarity=0.105 Sum_probs=76.2
Q ss_pred hHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCcccc
Q 048216 419 CEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPGKYC 498 (654)
Q Consensus 419 ~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~~l~ 498 (654)
++..+..+++|++|+|++| .+..+| .+ +++++|++|++++|.+..+|..+..+++|++|++++ . ....+|
T Consensus 40 l~~~~~~l~~L~~L~ls~n----~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~---N-~l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTN----NIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISY---N-QIASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSEE----EESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE---E-ECCCHH
T ss_pred hhHHHhcCCCCCEEECCCC----CCcccc-cc-ccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC---C-cCCcCC
Confidence 3457899999999999999 888899 77 999999999999999999999999999999999754 2 233455
Q ss_pred hhcCCCCCCCeEEEeccCCccc
Q 048216 499 NSLENLNFISALHHCYCTEDIL 520 (654)
Q Consensus 499 ~~l~~l~~L~~L~l~~~~~~~~ 520 (654)
.+.++++|+.|++++|....+
T Consensus 110 -~~~~l~~L~~L~l~~N~i~~~ 130 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNKITNW 130 (198)
T ss_dssp -HHHHHHHSSEEEESEEECCCH
T ss_pred -ccccCCCCCEEECCCCcCCch
Confidence 678889999999999865544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.76 E-value=3e-08 Score=92.43 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=45.9
Q ss_pred eeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChh-hhccccccceeccccccccCCcccc-hhcCCCCC
Q 048216 429 LRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYC-NSLENLNF 506 (654)
Q Consensus 429 Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~-~~l~~l~~ 506 (654)
.+.++++++ .+..+|..+ ..+|++|++++|.+..+|.. +.++++|++|++++ . ....++ ..+.++++
T Consensus 9 ~~~l~~~~~----~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---n-~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSK----GLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ---N-QIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSS----CCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS---S-CCCCCCTTTTTTCTT
T ss_pred CCEEEecCC----CCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC---C-cceEeChhHccCCCc
Confidence 456677777 677777544 35777777777766666553 46666777776433 2 122333 23456666
Q ss_pred CCeEEEeccC
Q 048216 507 ISALHHCYCT 516 (654)
Q Consensus 507 L~~L~l~~~~ 516 (654)
|++|++++|.
T Consensus 78 L~~L~l~~N~ 87 (177)
T 2o6r_A 78 LTILYLHENK 87 (177)
T ss_dssp CCEEECCSSC
T ss_pred cCEEECCCCC
Confidence 6666666653
No 140
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.69 E-value=2.7e-08 Score=105.06 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=83.4
Q ss_pred CCceechhhHHHHHHHHhc--CCCCcEEEEEEcCCCchHHHHHHHHHccccccCC--------cceeEEEEeCCCC-CHH
Q 048216 101 RDTVGLDNRIEELLDLLIE--GPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY--------FDCRAWVQESLPY-DAD 169 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~~ 169 (654)
.+++||+++++++.+++.. .....+.+.|+|++|+||||||+++++. .... ....+|+..+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988865 2334678999999999999999999983 3211 2345677766666 888
Q ss_pred HHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccccC
Q 048216 170 QLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~ 218 (654)
.++..++.++.+...+....+... +...+.+.+..++.+|||||++.
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~--~~~~l~~~l~~~~~vlilDEi~~ 144 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGE--YIDKIKNGTRNIRAIIYLDEVDT 144 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHH--HHHHHHHHHSSSCEEEEEETTHH
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHH--HHHHHHHHhccCCCEEEEECHHH
Confidence 899999998843322111222234 67778888888777999999965
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.66 E-value=3.3e-08 Score=92.06 Aligned_cols=82 Identities=17% Similarity=0.189 Sum_probs=43.1
Q ss_pred ceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChh-hhccccccceeccccccccCCcccchh-cCCC
Q 048216 427 KFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYCNS-LENL 504 (654)
Q Consensus 427 ~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~~-l~~l 504 (654)
+.|++|+|++| .+..+|...|+++++|++|+|++|.+..+|.. +.++++|++|++++ . ....+|.. +.++
T Consensus 33 ~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~---N-~l~~l~~~~~~~l 104 (174)
T 2r9u_A 33 TDKQRLWLNNN----QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND---N-HLKSIPRGAFDNL 104 (174)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS---S-CCCCCCTTTTTTC
T ss_pred CCCcEEEeCCC----CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC---C-ccceeCHHHhccc
Confidence 45555666666 55555333335566666666666655555554 35556666665432 1 22233332 5556
Q ss_pred CCCCeEEEeccC
Q 048216 505 NFISALHHCYCT 516 (654)
Q Consensus 505 ~~L~~L~l~~~~ 516 (654)
++|+.|++++|.
T Consensus 105 ~~L~~L~L~~N~ 116 (174)
T 2r9u_A 105 KSLTHIYLYNNP 116 (174)
T ss_dssp TTCSEEECCSSC
T ss_pred cCCCEEEeCCCC
Confidence 666666666653
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.61 E-value=4.5e-08 Score=90.68 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=41.3
Q ss_pred ceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChh-hhccccccceeccccccccCCcccch-hcCCC
Q 048216 427 KFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADE-FWKVSKLRYLNFGAITLPAHPGKYCN-SLENL 504 (654)
Q Consensus 427 ~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~l~~l~~~~~l~~-~l~~l 504 (654)
+.|++|+|++| .|..++...|+++.+|++|+|++|.+..+|.. +.++++|++|++++ . ....++. .+.++
T Consensus 30 ~~l~~L~L~~N----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~---N-~l~~~~~~~~~~l 101 (170)
T 3g39_A 30 TTTQVLYLYDN----QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND---N-QLKSIPRGAFDNL 101 (170)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS---S-CCCCCCTTTTTTC
T ss_pred CCCcEEEcCCC----cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC---C-ccCEeCHHHhcCC
Confidence 44555555555 55555333225555555555555555555543 35555555555432 1 1222332 35555
Q ss_pred CCCCeEEEecc
Q 048216 505 NFISALHHCYC 515 (654)
Q Consensus 505 ~~L~~L~l~~~ 515 (654)
++|+.|++++|
T Consensus 102 ~~L~~L~L~~N 112 (170)
T 3g39_A 102 KSLTHIWLLNN 112 (170)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEeCCC
Confidence 66666666655
No 143
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.61 E-value=9.1e-08 Score=100.86 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=83.2
Q ss_pred CCceechhhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHccccccCC------cceeEEEEeCCCCCHHHHH
Q 048216 101 RDTVGLDNRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY------FDCRAWVQESLPYDADQLL 172 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~~~ 172 (654)
..++||+++++++..++... ....+.+.|+|++|+||||||+++++. .... --..+|+......+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 67999999999999998542 345678999999999999999999983 3221 1235677777778889999
Q ss_pred HHHHHHhCCCCCcccccccChHHHHHHHHHHH--cCCceEEEeccccC
Q 048216 173 YDIIKLVMPSRRLSEIMKESSEMKKIILHEYV--MTKRYLIVLDNFEN 218 (654)
Q Consensus 173 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LiVLDDvw~ 218 (654)
..++.+++.... ....+... +...+.+.+ .+++.+|||||+..
T Consensus 97 ~~l~~~l~~~~~-~~~~~~~~--~~~~l~~~l~~~~~~~vlilDEi~~ 141 (387)
T 2v1u_A 97 SAIAEAVGVRVP-FTGLSVGE--VYERLVKRLSRLRGIYIIVLDEIDF 141 (387)
T ss_dssp HHHHHHHSCCCC-SSCCCHHH--HHHHHHHHHTTSCSEEEEEEETTTH
T ss_pred HHHHHHhCCCCC-CCCCCHHH--HHHHHHHHHhccCCeEEEEEccHhh
Confidence 999999976432 12222233 556666666 35688999999954
No 144
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.58 E-value=6.5e-08 Score=100.49 Aligned_cols=230 Identities=12% Similarity=0.076 Sum_probs=133.1
Q ss_pred CCCCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC------CHHHH
Q 048216 98 FKDRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY------DADQL 171 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~ 171 (654)
.....++||++++++|.+++..+ +++.|+|++|+|||||++++++. . + .+|+.+.... +...+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHH
Confidence 34567999999999999998763 68999999999999999999984 2 1 6677654332 56666
Q ss_pred HHHHHHHhCCC----------------CCcccccccChHHHHHHHHHHHcC-CceEEEeccccC----------------
Q 048216 172 LYDIIKLVMPS----------------RRLSEIMKESSEMKKIILHEYVMT-KRYLIVLDNFEN---------------- 218 (654)
Q Consensus 172 ~~~i~~~l~~~----------------~~~~~~~~~~~~~~~~~l~~~L~~-kr~LiVLDDvw~---------------- 218 (654)
...+...+... ..+....+... +...+.+.... ++++||+||++.
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLRE--VFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHH--HHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHH--HHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 77666655420 00001112233 45555555543 499999999932
Q ss_pred ---------------cc--cc-ccc---ccC------C-CCcee--------------------------------E-ec
Q 048216 219 ---------------GE--NI-GLD---FVP------T-RGPLR--------------------------------V-TY 237 (654)
Q Consensus 219 ---------------G~--~v-~~~---~~~------~-~~~~~--------------------------------v-~c 237 (654)
|. .+ ... ... . ...+. + .|
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t 235 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELL 235 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 10 00 000 000 0 00111 4 89
Q ss_pred CCchHHHHHHH-hhcccccc---chhccCC-CchhhhhhcCC---chhHHHHHhhhccCCCCceeChHHHHHHHHHcCCC
Q 048216 238 KGWPFYILYHR-SISQKENI---EEALDEP-RGLQVVAYCML---PFYLKLFCLYLSVFPVHFDICTKQLYQLWIAEGFI 309 (654)
Q Consensus 238 ~GlPLai~~~g-~L~~~~~~---~~~l~~~-~~~l~~sy~~L---~~~~k~cfly~s~Fp~~~~i~~~~Li~~Wiaegfi 309 (654)
+|.|+++..++ .+...... ..++.+. ...+.-.+..+ ++..+..+..+|. + ..+...+.....+.. -
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~-~ 310 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKG-T 310 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTT-C
T ss_pred CCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHh-C
Confidence 99999999988 65321110 0011111 11121122233 6788889988887 2 234455554432210 0
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccCCCCCCcceEEe-ChhHHHH
Q 048216 310 PDNNEAAAEKYLEQLINGGFVDAGKRSDISRINTCSI-PGRCSPA 353 (654)
Q Consensus 310 ~~~~e~~~~~~~~~L~~~sll~~~~~~~~g~~~~~~m-hdlv~dl 353 (654)
. ........+++.|.+.+++.... ..|++ |.+++.+
T Consensus 311 ~-~~~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~ 347 (350)
T 2qen_A 311 K-IPEPRLYALLENLKKMNWIVEED-------NTYKIADPVVATV 347 (350)
T ss_dssp C-CCHHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHH
T ss_pred C-CCHHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHH
Confidence 1 12355678999999999998652 23555 5666654
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.57 E-value=3.3e-07 Score=96.70 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=81.8
Q ss_pred CCceechhhHHHHHHHHhc----CCCCcEEEEEEcCCCchHHHHHHHHHccccccCCc-ceeEEEEeCCCCCHHHHHHHH
Q 048216 101 RDTVGLDNRIEELLDLLIE----GPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF-DCRAWVQESLPYDADQLLYDI 175 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 175 (654)
+.++||+++++++.+++.. .....+.+.|+|..|+||||||+.+++ ...... -..+++..+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 5799999999999999876 222334899999999999999999998 333321 245677777777888999999
Q ss_pred HHHhCCCCCcccccccChHHHHHHHHHHHc--CCceEEEeccccC
Q 048216 176 IKLVMPSRRLSEIMKESSEMKKIILHEYVM--TKRYLIVLDNFEN 218 (654)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LiVLDDvw~ 218 (654)
+..++.... ....+... +...+.+.+. +++.+|||||++.
T Consensus 95 ~~~l~~~~~-~~~~~~~~--~~~~l~~~l~~~~~~~vlilDE~~~ 136 (389)
T 1fnn_A 95 ARSLNIPFP-RRGLSRDE--FLALLVEHLRERDLYMFLVLDDAFN 136 (389)
T ss_dssp HHHTTCCCC-SSCCCHHH--HHHHHHHHHHHTTCCEEEEEETGGG
T ss_pred HHHhCccCC-CCCCCHHH--HHHHHHHHHhhcCCeEEEEEECccc
Confidence 998865432 11122233 5556666554 5688999999965
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.55 E-value=4.9e-08 Score=102.85 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=80.6
Q ss_pred CCceechhhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHccccccCCc---ceeEEEEeCCCCCHHHHHHHH
Q 048216 101 RDTVGLDNRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF---DCRAWVQESLPYDADQLLYDI 175 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i 175 (654)
..++||+++++.+.+++... ....+.+.|+|++|+||||||+.+++ .....| -..+|+......+...++..+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 67999999999999998752 34567899999999999999999998 443332 245677766666777888888
Q ss_pred HHHhCCCCCcccccccChHHHHHHHHHHHc--CCceEEEeccccC
Q 048216 176 IKLVMPSRRLSEIMKESSEMKKIILHEYVM--TKRYLIVLDNFEN 218 (654)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LiVLDDvw~ 218 (654)
+.+++.... ....+... ....+.+.+. +++.+|||||++.
T Consensus 98 ~~~l~~~~~-~~~~~~~~--~~~~l~~~l~~~~~~~vlilDE~~~ 139 (386)
T 2qby_A 98 LESLDVKVP-FTGLSIAE--LYRRLVKAVRDYGSQVVIVLDEIDA 139 (386)
T ss_dssp TTTTSCCCC-SSSCCHHH--HHHHHHHHHHTCCSCEEEEEETHHH
T ss_pred HHHhCCCCC-CCCCCHHH--HHHHHHHHHhccCCeEEEEEcChhh
Confidence 887754322 11112223 4556666664 4589999999954
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=6.2e-08 Score=100.03 Aligned_cols=98 Identities=11% Similarity=-0.023 Sum_probs=64.9
Q ss_pred CCCCe-EEEEee-cCCCCCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccc-eEEEeecccCCCeeE-EcCCCC
Q 048216 532 CLESL-KLANES-KMPRRSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQ-VLKLKQNSYSGRKLA-CSSDGF 607 (654)
Q Consensus 532 ~~~~L-~L~l~~-~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~-~L~L~~~~~~~~~l~-~~~~~f 607 (654)
++ +| .+++.+ .+..+|.. .+... ++|+.|+|.++ +.......+.++++|+ .|.+.+ . ...+. ....++
T Consensus 225 ~~-~L~~l~L~~n~i~~I~~~--aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~--l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MP-NLVSLDISKTNATTIPDF--TFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S--VTAIEFGAFMGC 296 (329)
T ss_dssp CT-TCCEEECTTBCCCEECTT--TTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T--CCEECTTTTTTC
T ss_pred cC-CCeEEECCCCCcceecHh--hhhCC-CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c--ceEEchhhhhCC
Confidence 45 89 999987 47777762 34566 89999999887 5555556688999999 999983 2 22222 223456
Q ss_pred ccccEEEEecCCCCcceeE-cCccccccceee
Q 048216 608 PKLKVLHLKSMLWLEEWTM-GIRAMPKLECLI 638 (654)
Q Consensus 608 ~~L~~L~l~~~~~l~~l~~-~~~~~p~L~~L~ 638 (654)
++|+.|++.+ ++++.++. ....+++|+.|.
T Consensus 297 ~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 297 DNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred ccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 7888888865 46666643 233345555543
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.44 E-value=2.3e-07 Score=86.24 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=50.1
Q ss_pred cccccccCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccC
Q 048216 392 GFLDDFDSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTA 471 (654)
Q Consensus 392 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP 471 (654)
.++..+.++|+.|.+.++... .+.+..|.++++|++|+|++| .+..+|..+|+++++|++|+|++|.+..+|
T Consensus 26 ~iP~~~~~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N----~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~ 97 (174)
T 2r9u_A 26 SVPAGIPTDKQRLWLNNNQIT----KLEPGVFDHLVNLQQLYFNSN----KLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97 (174)
T ss_dssp SCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCCcCCCCcEEEeCCCCcc----ccCHHHhcCCcCCCEEECCCC----CCCccChhHhCCcchhhEEECCCCccceeC
Confidence 344444556666666655543 233445566666666666666 566666555456666666666666666665
Q ss_pred hh-hhccccccceecc
Q 048216 472 DE-FWKVSKLRYLNFG 486 (654)
Q Consensus 472 ~~-i~~L~~L~~L~l~ 486 (654)
.. +.++++|++|+++
T Consensus 98 ~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TTTTTTCTTCSEEECC
T ss_pred HHHhccccCCCEEEeC
Confidence 54 5566666666643
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.35 E-value=7.2e-07 Score=82.50 Aligned_cols=106 Identities=16% Similarity=0.086 Sum_probs=78.2
Q ss_pred eeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCcccccc-ChhhhccccccceeccccccccCCcccch-hcCCCC
Q 048216 428 FLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHT-ADEFWKVSKLRYLNFGAITLPAHPGKYCN-SLENLN 505 (654)
Q Consensus 428 ~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~l-P~~i~~L~~L~~L~l~~l~~l~~~~~l~~-~l~~l~ 505 (654)
..++|+++++ .+..+|..+ ..+|++|+|++|.+..+ |..+.++++|++|++++ . ....++. .+.+++
T Consensus 10 ~~~~l~~s~n----~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~---N-~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGK----SLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN---N-QLTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECTTS----CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS---S-CCCCCCTTTTTTCT
T ss_pred CCCEEEeCCC----CcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCC---C-CcCccChhhccCCC
Confidence 3578999999 899999877 38999999999999988 56688999999999654 2 2334444 357788
Q ss_pred CCCeEEEeccCCcccchhhhcccccCCCCCeEEEEeecCCCCCCcchhhhcCCCCccEEEEEeeccCCC
Q 048216 506 FISALHHCYCTEDILGRLLVQILILSCLESLKLANESKMPRRSNIILAEYQFPPSLTHLSFSNIELMDD 574 (654)
Q Consensus 506 ~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~L~l~~~~~~lp~~~~~~~~lp~~L~~L~L~~~~l~~~ 574 (654)
+|++|++++|....++ |. .+..+ ++|++|+|++|.+.+.
T Consensus 79 ~L~~L~L~~N~l~~~~--------------------------~~---~~~~l-~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIP--------------------------RG---AFDNL-KSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TCCEEECCSSCCCCCC--------------------------TT---TTTTC-TTCCEEECCSSCBCTT
T ss_pred CCCEEECCCCccCEeC--------------------------HH---HhcCC-CCCCEEEeCCCCCCCC
Confidence 8888888877433321 12 35567 7888888888876554
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.34 E-value=3.9e-06 Score=88.81 Aligned_cols=210 Identities=11% Similarity=0.069 Sum_probs=120.2
Q ss_pred ceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccChhhhcccc
Q 048216 400 FLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSK 479 (654)
Q Consensus 400 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~ 479 (654)
+|+++.+..+-. .+....|.++ .|+.+.|.. .+..++...|.++.+|+.+++.+|.+..+|...-...+
T Consensus 136 ~L~~i~l~~~i~-----~I~~~aF~~~-~L~~i~lp~-----~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~ 204 (401)
T 4fdw_A 136 QIAKVVLNEGLK-----SIGDMAFFNS-TVQEIVFPS-----TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG 204 (401)
T ss_dssp CCSEEECCTTCC-----EECTTTTTTC-CCCEEECCT-----TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCC
T ss_pred CccEEEeCCCcc-----EECHHhcCCC-CceEEEeCC-----CccEehHHHhhCcccCCeeecCCCcceEechhhEeecc
Confidence 566666543311 2334455553 477777764 46777777778888888888888888888776555677
Q ss_pred ccceeccccccccCCcccc-hhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEEeecCCCCCCcchhhhcC
Q 048216 480 LRYLNFGAITLPAHPGKYC-NSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLANESKMPRRSNIILAEYQF 557 (654)
Q Consensus 480 L~~L~l~~l~~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l~~~~~~lp~~~~~~~~l 557 (654)
|+.+.+.. ....++ ..+.++++|+.+.+..+ ...++ -..+.. . +| .+.+...+..++.. .+...
T Consensus 205 L~~l~lp~-----~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~----~~aF~~-~-~L~~i~lp~~i~~I~~~--aF~~c 270 (401)
T 4fdw_A 205 IEEVLLPV-----TLKEIGSQAFLKTSQLKTIEIPEN-VSTIG----QEAFRE-S-GITTVKLPNGVTNIASR--AFYYC 270 (401)
T ss_dssp CSEEECCT-----TCCEECTTTTTTCTTCCCEECCTT-CCEEC----TTTTTT-C-CCSEEEEETTCCEECTT--TTTTC
T ss_pred cCEEEeCC-----chheehhhHhhCCCCCCEEecCCC-ccCcc----cccccc-C-CccEEEeCCCccEEChh--HhhCC
Confidence 88877643 223333 35667778888877653 22221 122333 3 67 77776655555441 34455
Q ss_pred CCCccEEEEEeeccC-----CCCccccccCcccceEEEeecccCCCeeE-EcCCCCccccEEEEecCCCCcceeEc-Ccc
Q 048216 558 PPSLTHLSFSNIELM-----DDPMPALEKLPVLQVLKLKQNSYSGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTMG-IRA 630 (654)
Q Consensus 558 p~~L~~L~L~~~~l~-----~~~l~~l~~l~~L~~L~L~~~~~~~~~l~-~~~~~f~~L~~L~l~~~~~l~~l~~~-~~~ 630 (654)
++|+.+.+.++... ......+..+++|+.+.|. +.. ..+. ....++++|+.+.|.+ +++.+... ...
T Consensus 271 -~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i--~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~ 344 (401)
T 4fdw_A 271 -PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI--RILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNN 344 (401)
T ss_dssp -TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC--CEECTTTTTTCCSCCEEEECT--TCCEECTTSSSS
T ss_pred -CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce--EEEhhhhhcCCCCccEEEECc--cccEEcHHhCCC
Confidence 77888888776543 1223346677777777776 221 1111 1122346677777743 35544321 223
Q ss_pred ccccceeeeec
Q 048216 631 MPKLECLIINP 641 (654)
Q Consensus 631 ~p~L~~L~i~~ 641 (654)
+ +|+.+.+.+
T Consensus 345 ~-~L~~l~l~~ 354 (401)
T 4fdw_A 345 T-GIKEVKVEG 354 (401)
T ss_dssp S-CCCEEEECC
T ss_pred C-CCCEEEEcC
Confidence 3 666666655
No 151
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.34 E-value=7e-07 Score=92.83 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=51.1
Q ss_pred CCCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCC-----CCHHHHHH
Q 048216 99 KDRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLP-----YDADQLLY 173 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~ 173 (654)
....++||+++++.|.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+..... .+...+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHH
Confidence 44679999999999999 643 59999999999999999999984 322 2578876542 34455555
Q ss_pred HHHHHh
Q 048216 174 DIIKLV 179 (654)
Q Consensus 174 ~i~~~l 179 (654)
.+...+
T Consensus 80 ~l~~~l 85 (357)
T 2fna_A 80 ELQKEI 85 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 152
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.14 E-value=5.3e-06 Score=84.15 Aligned_cols=112 Identities=7% Similarity=0.006 Sum_probs=73.4
Q ss_pred CceechhhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHccccccC---Ccc--eeEEEEeCCCCCHHHHHHH
Q 048216 102 DTVGLDNRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKH---YFD--CRAWVQESLPYDADQLLYD 174 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~--~~~wv~vs~~~~~~~~~~~ 174 (654)
.+.||++++++|...|... +.....+-|+|.+|.|||++|++|.+.-.-.. ... ..+.|....-.+...+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999999888753 34667889999999999999999998432111 111 2345555566788899999
Q ss_pred HHHHhCCCCCcccccccChHHHHHHHHHH--HcCCceEEEeccc
Q 048216 175 IIKLVMPSRRLSEIMKESSEMKKIILHEY--VMTKRYLIVLDNF 216 (654)
Q Consensus 175 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LiVLDDv 216 (654)
|++++.+... ......+. +...+... -.++.++||||++
T Consensus 101 I~~~L~g~~~-~~~~~~~~--L~~~f~~~~~~~~~~~ii~lDE~ 141 (318)
T 3te6_A 101 IWFAISKENL-CGDISLEA--LNFYITNVPKAKKRKTLILIQNP 141 (318)
T ss_dssp HHHHHSCCC---CCCCHHH--HHHHHHHSCGGGSCEEEEEEECC
T ss_pred HHHHhcCCCC-CchHHHHH--HHHHHHHhhhccCCceEEEEecH
Confidence 9999976532 01111112 33333321 2456899999998
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.14 E-value=2.2e-05 Score=82.99 Aligned_cols=230 Identities=10% Similarity=0.095 Sum_probs=143.6
Q ss_pred ceeEEEEecCCCCccccccc-cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCC
Q 048216 378 NVKRFTAHEKLNDFGFLDDF-DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLN 456 (654)
Q Consensus 378 ~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~ 456 (654)
+++.+.+. ++....-...+ ..+|+++.+...-. .+....|.++++|+.++|+++ .+..+|...|. ..+
T Consensus 136 ~L~~i~l~-~~i~~I~~~aF~~~~L~~i~lp~~l~-----~I~~~aF~~c~~L~~l~l~~n----~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 136 QIAKVVLN-EGLKSIGDMAFFNSTVQEIVFPSTLE-----QLKEDIFYYCYNLKKADLSKT----KITKLPASTFV-YAG 204 (401)
T ss_dssp CCSEEECC-TTCCEECTTTTTTCCCCEEECCTTCC-----EECSSTTTTCTTCCEEECTTS----CCSEECTTTTT-TCC
T ss_pred CccEEEeC-CCccEECHHhcCCCCceEEEeCCCcc-----EehHHHhhCcccCCeeecCCC----cceEechhhEe-ecc
Confidence 35555554 33322122233 44688887765221 245678999999999999999 89999999865 689
Q ss_pred ceEEcCCCccccccCh-hhhccccccceeccccccccCCcccch-hcCCCCCCCeEEEeccCCcccchhhhcccccCCCC
Q 048216 457 LYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGKYCN-SLENLNFISALHHCYCTEDILGRLLVQILILSCLE 534 (654)
Q Consensus 457 L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~ 534 (654)
|+.+.|..+ +..++. .+.++.+|+.+.+.. ....++. .+.+ .+|+.+.+..+ ...+ .-..+..++
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-----~l~~I~~~aF~~-~~L~~i~lp~~-i~~I----~~~aF~~c~- 271 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-----NVSTIGQEAFRE-SGITTVKLPNG-VTNI----ASRAFYYCP- 271 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCT-----TCCEECTTTTTT-CCCSEEEEETT-CCEE----CTTTTTTCT-
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCC-----CccCcccccccc-CCccEEEeCCC-ccEE----ChhHhhCCC-
Confidence 999999854 666654 577899999999754 2333332 3344 78999988543 3333 234566677
Q ss_pred Ce-EEEEeecCCC------CCCcchhhhcCCCCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeEE-cCCC
Q 048216 535 SL-KLANESKMPR------RSNIILAEYQFPPSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLAC-SSDG 606 (654)
Q Consensus 535 ~L-~L~l~~~~~~------lp~~~~~~~~lp~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~~-~~~~ 606 (654)
+| .+.+.+.... ++.. .+... ++|+.+.|.++ +.......+.++++|+.+.|. +.. ..+.. ...+
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~--aF~~c-~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp-~~l--~~I~~~aF~~ 344 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPY--CLEGC-PKLARFEIPES-IRILGQGLLGGNRKVTQLTIP-ANV--TQINFSAFNN 344 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTT--TTTTC-TTCCEECCCTT-CCEECTTTTTTCCSCCEEEEC-TTC--CEECTTSSSS
T ss_pred CCCEEEeCCccccCCcccEECHH--HhhCC-ccCCeEEeCCc-eEEEhhhhhcCCCCccEEEEC-ccc--cEEcHHhCCC
Confidence 89 9998765432 4441 34456 88999998743 444445567888999999997 321 22211 1233
Q ss_pred CccccEEEEecCCCCcceeEc-Ccccc-ccceeeee
Q 048216 607 FPKLKVLHLKSMLWLEEWTMG-IRAMP-KLECLIIN 640 (654)
Q Consensus 607 f~~L~~L~l~~~~~l~~l~~~-~~~~p-~L~~L~i~ 640 (654)
+ +|+.+.+.+. .+..++.. ...+| +++.|.+-
T Consensus 345 ~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 345 T-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp S-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEEC
T ss_pred C-CCCEEEEcCC-CCcccccccccCCCCCccEEEeC
Confidence 4 7888888873 44443311 12232 45555553
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=5e-06 Score=85.58 Aligned_cols=181 Identities=9% Similarity=0.002 Sum_probs=117.4
Q ss_pred hhHhhhcc--------cceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccCh-hhhccccccceeccc-
Q 048216 418 YCEKICKM--------FKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGA- 487 (654)
Q Consensus 418 ~~~~~~~~--------l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~- 487 (654)
+....|.+ +++|+.|+|..+ +..+++..|.++.+|+.|++.++.+..++. .+....++.++..+.
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~~-----i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~ 158 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSEK-----IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSS 158 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCTT-----CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCT
T ss_pred cCHHHhcccccccccccCCCcEEECCcc-----ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcch
Confidence 45567777 899999998873 678888877889999999998887666654 344555555554321
Q ss_pred ----------------ccccc------CCcccchh---------------------------c-CCCCCCCeEEEeccCC
Q 048216 488 ----------------ITLPA------HPGKYCNS---------------------------L-ENLNFISALHHCYCTE 517 (654)
Q Consensus 488 ----------------l~~l~------~~~~l~~~---------------------------l-~~l~~L~~L~l~~~~~ 517 (654)
+..++ ....++.. + ..+++|++|+++.|..
T Consensus 159 ~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 159 DAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp HHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred hhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc
Confidence 00000 00011110 0 1268999999998877
Q ss_pred cccchhhhcccccCCCCCe-EEEEeecCCCCCCcchhhhcCCCCcc-EEEEEeeccCCCCccccccCcccceEEEeeccc
Q 048216 518 DILGRLLVQILILSCLESL-KLANESKMPRRSNIILAEYQFPPSLT-HLSFSNIELMDDPMPALEKLPVLQVLKLKQNSY 595 (654)
Q Consensus 518 ~~~~~~~~l~~l~~~~~~L-~L~l~~~~~~lp~~~~~~~~lp~~L~-~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~ 595 (654)
..++ -..+..+. +| .+.+..++..++.. .+... ++|+ .|+|.+ ++.......+.++++|+.|.+.++..
T Consensus 239 ~~I~----~~aF~~~~-~L~~l~l~~ni~~I~~~--aF~~~-~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 239 TTIP----DFTFAQKK-YLLKIKLPHNLKTIGQR--VFSNC-GRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp CEEC----TTTTTTCT-TCCEEECCTTCCEECTT--TTTTC-TTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ceec----HhhhhCCC-CCCEEECCcccceehHH--HhhCC-hhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 7773 34577777 99 99998877777662 45567 8899 999988 55555566788999999999973332
Q ss_pred CCCeeEE-cCCCCccccEEE
Q 048216 596 SGRKLAC-SSDGFPKLKVLH 614 (654)
Q Consensus 596 ~~~~l~~-~~~~f~~L~~L~ 614 (654)
..+.. ...++++|+.++
T Consensus 310 --~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 310 --TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp --CEECTTTTCTTCCCCEEE
T ss_pred --CccchhhhcCCcchhhhc
Confidence 22211 123455666654
No 155
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.08 E-value=6.1e-06 Score=79.17 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=38.3
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|+++.++.+.+++.... ...+.|+|.+|+||||+|+.+++
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998763 33489999999999999999987
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.05 E-value=4.7e-06 Score=86.42 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=64.3
Q ss_pred Cccccccc--cCceeEEEEec-CCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCcc
Q 048216 390 DFGFLDDF--DSFLHSLLYLT-SGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSY 466 (654)
Q Consensus 390 ~~~~~~~~--~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~ 466 (654)
...+|. + .++|+.|.+.+ +... .+.+..|.++++|++|+|++| .|..+|...|++|.+|++|+|++|.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~----~~~~~~~~~l~~L~~L~l~~N----~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKS----GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSS----CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCC----CcChhHhccccCCCEEECCCC----ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 334555 5 67788888875 5543 355567888888888888888 7777776655888888888888888
Q ss_pred ccccChhhhccccccceeccc
Q 048216 467 IDHTADEFWKVSKLRYLNFGA 487 (654)
Q Consensus 467 l~~lP~~i~~L~~L~~L~l~~ 487 (654)
+..+|..+....+|++|++.+
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCS
T ss_pred cceeCHHHcccCCceEEEeeC
Confidence 888877655544588888654
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.02 E-value=4.1e-06 Score=86.88 Aligned_cols=90 Identities=17% Similarity=-0.002 Sum_probs=71.9
Q ss_pred hHhhhcccceeeEEecCC-CCCCCCCCcCChhHHhcCCCceEEcCCCccccccCh-hhhccccccceeccccccccCCcc
Q 048216 419 CEKICKMFKFLRVLNLGS-LLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNFGAITLPAHPGK 496 (654)
Q Consensus 419 ~~~~~~~l~~Lr~L~L~~-~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l~~l~~l~~~~~ 496 (654)
+|. +..+++|+.|+|++ | .+..+|...|++|.+|++|+|++|.+..+|. .|.+|++|++|+|++ . ....
T Consensus 24 ip~-l~~~~~L~~L~l~~~n----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~---N-~l~~ 94 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQ----HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF---N-ALES 94 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCS----SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS---S-CCSC
T ss_pred cCC-CCCCCCeeEEEccCCC----CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC---C-ccce
Confidence 345 89999999999996 8 8999997655999999999999999998765 679999999999754 2 3345
Q ss_pred cchhcCCCCCCCeEEEeccCC
Q 048216 497 YCNSLENLNFISALHHCYCTE 517 (654)
Q Consensus 497 l~~~l~~l~~L~~L~l~~~~~ 517 (654)
+|..+.....|+.|++.+|..
T Consensus 95 ~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSTTTCSCCCCEEECCSSCC
T ss_pred eCHHHcccCCceEEEeeCCCc
Confidence 665444433499999998854
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.99 E-value=1.2e-05 Score=75.10 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=38.9
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+++||++.++++.+.+... ..+.+.|+|.+|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999998774 3456789999999999999999873
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=2.1e-06 Score=78.96 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=65.0
Q ss_pred CCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCe-eEEcCC---CCccccEEEEecCCCCcceeE-cCccccc
Q 048216 559 PSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRK-LACSSD---GFPKLKVLHLKSMLWLEEWTM-GIRAMPK 633 (654)
Q Consensus 559 ~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~-l~~~~~---~f~~L~~L~l~~~~~l~~l~~-~~~~~p~ 633 (654)
-+|+.|+|++|.++...+..+.++++|++|+|++|...... +..-.. ..++|++|++++|++++.--. ....+|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47999999999988888888899999999999965433221 111111 135799999999988875321 1245899
Q ss_pred cceeeeecCcCCcc
Q 048216 634 LECLIINPCAHLKG 647 (654)
Q Consensus 634 L~~L~i~~C~~L~~ 647 (654)
|+.|++++|++++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 99999999998764
No 160
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.95 E-value=1.6e-05 Score=77.22 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=39.6
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+++||+..++.+..++..+. ..+.+.|+|.+|+||||||+.+++.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997753 2358899999999999999999873
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.95 E-value=5.5e-07 Score=94.48 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=39.0
Q ss_pred ceeeEEecCCCCCCCCCCcC-ChhHHhcCCCceEEcCCCccccccC-----hhh-hccccccceecccccccc----CCc
Q 048216 427 KFLRVLNLGSLLNIPSLKSL-PSSLLSSLLNLYTLDMPFSYIDHTA-----DEF-WKVSKLRYLNFGAITLPA----HPG 495 (654)
Q Consensus 427 ~~Lr~L~L~~~~~lp~i~~l-P~~if~~L~~L~~L~L~~~~l~~lP-----~~i-~~L~~L~~L~l~~l~~l~----~~~ 495 (654)
+.|+.|+|++| .+..- ...++..+.+|++|+|++|.+.... ..+ ....+|++|++++ +. ...
T Consensus 101 ~~L~~L~Ls~n----~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~---n~l~~~~~~ 173 (372)
T 3un9_A 101 HALDEVNLASC----QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSN---NPLTAAGVA 173 (372)
T ss_dssp SCEEEEECTTC----CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCS---SCCHHHHHH
T ss_pred CCceEEEecCC----CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCC---CCCChHHHH
Confidence 46666666666 44321 1122134556666666666554321 111 1234566666432 21 112
Q ss_pred ccchhcCCCCCCCeEEEeccC
Q 048216 496 KYCNSLENLNFISALHHCYCT 516 (654)
Q Consensus 496 ~l~~~l~~l~~L~~L~l~~~~ 516 (654)
.++..+...++|++|++++|.
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSS
T ss_pred HHHHHHhcCCCcCEEeCCCCC
Confidence 234444555566666666654
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.85 E-value=4.9e-06 Score=87.19 Aligned_cols=135 Identities=12% Similarity=0.017 Sum_probs=90.0
Q ss_pred cCceeEEEEecCCCCc-cccccc-------cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCC
Q 048216 376 RENVKRFTAHEKLNDF-GFLDDF-------DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLP 447 (654)
Q Consensus 376 ~~~~r~lsl~~~~~~~-~~~~~~-------~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP 447 (654)
...++.+.+. ++... .....+ .++|+.|.+.++... ..........+++|+.|+|++| .+...+
T Consensus 71 ~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~---~~~~~~l~~~L~~L~~L~Ls~n----~l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLA-GVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLN----SLGPEA 142 (372)
T ss_dssp HTTCCEEECT-TSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC---HHHHHHTHHHHHTEEEEECCSS----CCCHHH
T ss_pred HhhCCEEEec-CCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC---HHHHHHHHHHHHhccHhhcCCC----CCCHHH
Confidence 3457777777 43332 111111 268999999988764 3344455667788999999999 675433
Q ss_pred hhHHh-----cCCCceEEcCCCccccc-----cChhhhccccccceecccccccc--CCcccchhcCCCCCCCeEEEecc
Q 048216 448 SSLLS-----SLLNLYTLDMPFSYIDH-----TADEFWKVSKLRYLNFGAITLPA--HPGKYCNSLENLNFISALHHCYC 515 (654)
Q Consensus 448 ~~if~-----~L~~L~~L~L~~~~l~~-----lP~~i~~L~~L~~L~l~~l~~l~--~~~~l~~~l~~l~~L~~L~l~~~ 515 (654)
...++ ...+|++|+|++|.+.. ++..+..+++|++|++++ ..+. ....++..+...++|++|++++|
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 22212 35789999999997754 666678899999999754 1111 12245667778889999999988
Q ss_pred CCcc
Q 048216 516 TEDI 519 (654)
Q Consensus 516 ~~~~ 519 (654)
....
T Consensus 222 ~i~~ 225 (372)
T 3un9_A 222 GAGD 225 (372)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 6543
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.84 E-value=3.2e-06 Score=87.98 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=47.0
Q ss_pred hhcccceeeEEecCCCCC----CC--CCCcCChhHHhcCCCceEEcCCCccccccChhhhccccccceeccccccccCCc
Q 048216 422 ICKMFKFLRVLNLGSLLN----IP--SLKSLPSSLLSSLLNLYTLDMPFSYIDHTADEFWKVSKLRYLNFGAITLPAHPG 495 (654)
Q Consensus 422 ~~~~l~~Lr~L~L~~~~~----lp--~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~~L~~L~l~~l~~l~~~~ 495 (654)
...++++||.|.+..... +. ....++.-+ ..+++|+.|+|++|.-..+|. + .+.+|++|++.. +....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll-~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~---~~l~~ 207 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL-DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIIS---GGLPD 207 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH-HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEEC---SBCCH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHH-hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEec---CCCCh
Confidence 345667777777754410 00 012355555 777888888888772224444 3 377788887532 11111
Q ss_pred ccchhc--CCCCCCCeEEEec
Q 048216 496 KYCNSL--ENLNFISALHHCY 514 (654)
Q Consensus 496 ~l~~~l--~~l~~L~~L~l~~ 514 (654)
.....+ .++++|++|+|+.
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHHHHccCCCCcEEEEec
Confidence 111222 2677888888764
No 164
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.80 E-value=3.2e-05 Score=71.81 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=38.3
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|+++.++.+.+.+... ..+.+.|+|..|+||||||+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999764 345678999999999999999987
No 165
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=2.7e-05 Score=79.51 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=38.3
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999998763 33388999999999999999988
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.66 E-value=2e-05 Score=81.96 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=98.6
Q ss_pred cccChhhhccccccceeccccc--ccc----CCcccchhcCCCCCCCeEEEeccCCcccchhhhcccccCCCCCe-EEEE
Q 048216 468 DHTADEFWKVSKLRYLNFGAIT--LPA----HPGKYCNSLENLNFISALHHCYCTEDILGRLLVQILILSCLESL-KLAN 540 (654)
Q Consensus 468 ~~lP~~i~~L~~L~~L~l~~l~--~l~----~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~~~~L-~L~l 540 (654)
..++.++.++++|+.|.+..++ .+. ....+...+..+++|++|+++++....+ ..+. ++ +| .|.+
T Consensus 129 ~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l------~~~~-~~-~L~~L~L 200 (362)
T 2ra8_A 129 DGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI------GKKP-RP-NLKSLEI 200 (362)
T ss_dssp HHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC------CSCB-CT-TCSEEEE
T ss_pred HHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee------cccc-CC-CCcEEEE
Confidence 3455667788999999864321 000 1223556667789999999998743233 2233 56 89 9999
Q ss_pred eecCCCCCCc-chhhh--cCCCCccEEEEEee--ccCCC-Cc----ccc--ccCcccceEEEeecccCCC--eeEEcCCC
Q 048216 541 ESKMPRRSNI-ILAEY--QFPPSLTHLSFSNI--ELMDD-PM----PAL--EKLPVLQVLKLKQNSYSGR--KLACSSDG 606 (654)
Q Consensus 541 ~~~~~~lp~~-~~~~~--~lp~~L~~L~L~~~--~l~~~-~l----~~l--~~l~~L~~L~L~~~~~~~~--~l~~~~~~ 606 (654)
..+ .++.+ +..+. .+ ++|++|+|+.+ ..... .+ +.+ ..+|+|++|.|.+|..... ........
T Consensus 201 ~~~--~l~~~~l~~l~~~~l-p~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~ 277 (362)
T 2ra8_A 201 ISG--GLPDSVVEDILGSDL-PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277 (362)
T ss_dssp ECS--BCCHHHHHHHHHSBC-TTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred ecC--CCChHHHHHHHHccC-CCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence 743 23331 11222 68 99999999742 11111 11 122 3589999999985443211 11112246
Q ss_pred CccccEEEEecCCCCcce-----eEcCccccccceeeeecCc
Q 048216 607 FPKLKVLHLKSMLWLEEW-----TMGIRAMPKLECLIINPCA 643 (654)
Q Consensus 607 f~~L~~L~l~~~~~l~~l-----~~~~~~~p~L~~L~i~~C~ 643 (654)
+|+|++|+|+. +.+... ......+++|+.|++++|.
T Consensus 278 ~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 278 LPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 89999999975 556542 2222467999999999873
No 167
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.63 E-value=0.00011 Score=69.65 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhcCCCC--cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 048216 108 NRIEELLDLLIEGPPQ--LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIK 177 (654)
Q Consensus 108 ~~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 177 (654)
+.++.+.+++...... ...|.|+|.+|+||||||+++++ .........++++. ..+...+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~~~~ 99 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFRELKH 99 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHHHHH
Confidence 3455566666544222 26788999999999999999998 44443344566643 345555444
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=8.7e-05 Score=75.89 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=38.6
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|+++.++.+.+++..+. ...+.|+|.+|+||||+|+.+++
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence 469999999999999998763 33489999999999999999998
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.37 E-value=0.00015 Score=72.74 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=39.2
Q ss_pred CCCCceechhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIEG-----------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|.++.+++|.+.+... -...+-+-|+|.+|+||||||+++++
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3467999999999998887431 12446688999999999999999998
No 170
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.29 E-value=0.00044 Score=68.14 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=37.1
Q ss_pred CCCCceechhhHHHHHHHHhc---CC-------CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIE---GP-------PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|.++.++.|.+++.. .. ...+-|-|+|.+|+||||+|+++++
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999988888776532 11 2345678999999999999999998
No 171
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.29 E-value=0.0011 Score=67.03 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=60.5
Q ss_pred CCCceechhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCH
Q 048216 100 DRDTVGLDNRIEELLDLLIE-----------GPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDA 168 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 168 (654)
-.+++|.++.+++|.+++.. +-...+.|.|+|..|.||||||+++++ ..... ++.+ +.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~-----~i~v----~~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISI----KG 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCE-----EEEE----CH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCC-----EEEE----Eh
Confidence 45799999999999888753 113456789999999999999999998 33322 2333 23
Q ss_pred HHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHcCCceEEEecccc
Q 048216 169 DQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFE 217 (654)
Q Consensus 169 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw 217 (654)
.++... ..+.. ... +...+.........+|++|++-
T Consensus 83 ~~l~~~----~~g~~-------~~~--~~~~f~~a~~~~p~il~iDEid 118 (301)
T 3cf0_A 83 PELLTM----WFGES-------EAN--VREIFDKARQAAPCVLFFDELD 118 (301)
T ss_dssp HHHHHH----HHTTC-------TTH--HHHHHHHHHHTCSEEEEECSTT
T ss_pred HHHHhh----hcCch-------HHH--HHHHHHHHHhcCCeEEEEEChH
Confidence 333322 21111 122 4444444445677999999984
No 172
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=0.00011 Score=68.63 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=69.8
Q ss_pred cCceeEEEEecC-CCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCc-----CChhHHhcCCCceEEcCCCccccc--
Q 048216 398 DSFLHSLLYLTS-GSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKS-----LPSSLLSSLLNLYTLDMPFSYIDH-- 469 (654)
Q Consensus 398 ~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~-----lP~~if~~L~~L~~L~L~~~~l~~-- 469 (654)
.+.|++|.+.++ .........+...+...+.|++|+|++| .|.. +...+ ...++|++|+|++|.+..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n----~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT----RSNDPVAFALAEML-KVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS----CCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC----CCChHHHHHHHHHH-HhCCCcCEEECcCCcCCHHH
Confidence 567788877776 4431111234455667778888888888 5542 44555 666788888888886654
Q ss_pred ---cChhhhccccccceec--ccccccc--CCcccchhcCCCCCCCeEEEeccC
Q 048216 470 ---TADEFWKVSKLRYLNF--GAITLPA--HPGKYCNSLENLNFISALHHCYCT 516 (654)
Q Consensus 470 ---lP~~i~~L~~L~~L~l--~~l~~l~--~~~~l~~~l~~l~~L~~L~l~~~~ 516 (654)
+...+...++|++|++ +. ..+. ....+...+...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4556667777888875 22 1111 112244555566778888877764
No 173
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.23 E-value=0.00043 Score=64.13 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=51.4
Q ss_pred chhhHHHHHHHHhcCC-CCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 048216 106 LDNRIEELLDLLIEGP-PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRR 184 (654)
Q Consensus 106 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 184 (654)
.++.++.+.+++..-. .....+.|+|..|+||||||+.+++.......+ .++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCchH
Confidence 4444555555554421 235789999999999999999999832111221 12333 445555555544432211
Q ss_pred cccccccChHHHHHHHHHHHcCCceEEEecccc
Q 048216 185 LSEIMKESSEMKKIILHEYVMTKRYLIVLDNFE 217 (654)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw 217 (654)
.. ....+ . +.-+|||||++
T Consensus 92 -------~~--~~~~~----~-~~~llilDE~~ 110 (180)
T 3ec2_A 92 -------TK--FLKTV----L-NSPVLVLDDLG 110 (180)
T ss_dssp -------SH--HHHHH----H-TCSEEEEETCS
T ss_pred -------HH--HHHHh----c-CCCEEEEeCCC
Confidence 12 22222 2 45689999985
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.00031 Score=76.81 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=40.2
Q ss_pred CCCceechhhHHHHHHHHhcC---------------CCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 100 DRDTVGLDNRIEELLDLLIEG---------------PPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-.+++|+++.++++.+++... ....+.+-|+|.+|+||||+|+++++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999751 013478999999999999999999983
No 175
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.06 E-value=0.0022 Score=65.47 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=38.9
Q ss_pred CCCCCceechhhHHHHHHHHhc---------C-CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE---------G-PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.-.+++|.++.++.|.+.+.. + ....+-|-++|.+|+|||+||+++++
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 3346799999999999887742 1 12346788999999999999999998
No 176
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.06 E-value=0.0014 Score=65.96 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=38.5
Q ss_pred CCCceechhhHHHHHHHHhcC----------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEG----------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|.+..++.+.+++... ....+.|.|+|.+|+||||+|+++++
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 457999999999999887431 12346788999999999999999998
No 177
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.05 E-value=0.00057 Score=67.45 Aligned_cols=59 Identities=27% Similarity=0.203 Sum_probs=41.4
Q ss_pred hhcccceeeEEecCCCCCCCCCCcCC---hhHHhcCCCceEEcCCCccccccChhhhccc--cccceecc
Q 048216 422 ICKMFKFLRVLNLGSLLNIPSLKSLP---SSLLSSLLNLYTLDMPFSYIDHTADEFWKVS--KLRYLNFG 486 (654)
Q Consensus 422 ~~~~l~~Lr~L~L~~~~~lp~i~~lP---~~if~~L~~L~~L~L~~~~l~~lP~~i~~L~--~L~~L~l~ 486 (654)
...++++|+.|+|++| .|..++ ..+ +.+++|++|+|++|.+..+ ..+..+. +|++|+++
T Consensus 165 ~~~~l~~L~~L~Ls~N----~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 165 IEENIPELLSLNLSNN----RLYRLDDMSSIV-QKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLD 228 (267)
T ss_dssp HHHHCTTCCEEECTTS----CCCCCGGGTTHH-HHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECT
T ss_pred HHhhCCCCCEEECCCC----CCCCCccchhHH-hhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEcc
Confidence 3467788888888888 666554 455 7888888888888877766 3345444 66666653
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.02 E-value=0.00099 Score=69.09 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=38.6
Q ss_pred CCCceechhhHHHHHHHHhc----------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIE----------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|.+..++.|.+.+.. .....+-|.|+|..|+||||||+++++
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999888753 112356788999999999999999998
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.02 E-value=0.001 Score=71.07 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=55.5
Q ss_pred Cce-echh--hHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHH
Q 048216 102 DTV-GLDN--RIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKL 178 (654)
Q Consensus 102 ~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 178 (654)
++| |... ....+......... ...+.|+|.+|+||||||+++++ .....|...-++.+ +...+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v----~~~~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYI----TSEKFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEE----EHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEe----eHHHHHHHHHHH
Confidence 455 6333 33344444444332 67889999999999999999998 44443422222222 233445555555
Q ss_pred hCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccccC
Q 048216 179 VMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFEN 218 (654)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw~ 218 (654)
+.... ...+.+.+..+.-+|++||+..
T Consensus 179 ~~~~~-------------~~~~~~~~~~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 179 MKEGK-------------LNEFREKYRKKVDILLIDDVQF 205 (440)
T ss_dssp HHTTC-------------HHHHHHHHTTTCSEEEEECGGG
T ss_pred HHccc-------------HHHHHHHhcCCCCEEEEeCccc
Confidence 43221 1223344444677999999954
No 180
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.01 E-value=0.001 Score=67.91 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=38.8
Q ss_pred CCCCceechhhHHHHHHHHhc----------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIE----------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|.++.++.|.+.+.. .....+-|-++|.+|+|||+||+++++
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999988731 112345788999999999999999998
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.97 E-value=0.0014 Score=68.04 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=37.4
Q ss_pred CCCceechhhHHHH---HHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 100 DRDTVGLDNRIEEL---LDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 100 ~~~~vGr~~~~~~l---~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-++++|++..++.+ .+.+..+....+.+-|+|.+|+|||++|+++.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999987774 4555554333468899999999999999999983
No 182
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.95 E-value=0.0005 Score=63.05 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=36.3
Q ss_pred hcCCCCccEEEEEeec-cCCCCccccccC----cccceEEEeecccCCC-eeEEcCCCCccccEEEEecCCCCcc
Q 048216 555 YQFPPSLTHLSFSNIE-LMDDPMPALEKL----PVLQVLKLKQNSYSGR-KLACSSDGFPKLKVLHLKSMLWLEE 623 (654)
Q Consensus 555 ~~lp~~L~~L~L~~~~-l~~~~l~~l~~l----~~L~~L~L~~~~~~~~-~l~~~~~~f~~L~~L~l~~~~~l~~ 623 (654)
..+ ++|++|+|++|. ++...+..+..+ ++|++|+|++|..... .+. ....+++|++|++++|++++.
T Consensus 82 ~~~-~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 82 EGL-QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTC-SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred cCC-CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 345 666666666664 444444455543 3577777764432211 111 122467777777777776654
No 183
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.94 E-value=0.0023 Score=62.90 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=35.7
Q ss_pred CCCceechhhHHHHHHHHhc---C-------CCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 100 DRDTVGLDNRIEELLDLLIE---G-------PPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-.+++|.+..++++.+.+.. . ....+-|.|+|..|.||||||+++.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45799999888887665431 1 012345889999999999999999983
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.93 E-value=0.001 Score=67.31 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=35.8
Q ss_pred CceechhhHHHHHHHHhcC-------------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 102 DTVGLDNRIEELLDLLIEG-------------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+++|.++.++.|.+++..- ......+-|+|.+|+|||++|+++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5889999999888776421 23455788999999999999998887
No 185
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.89 E-value=0.0026 Score=67.92 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=39.1
Q ss_pred CCCCCceechhhHHHHHHHHhc----------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE----------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..-.+++|.+..++.|.+.+.. .....+-|-|+|.+|+|||+||+++++
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999888731 012346788999999999999999998
No 186
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.87 E-value=0.0036 Score=66.73 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=38.2
Q ss_pred CCCceechhhH---HHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRI---EELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|.+..+ ..+...+..+ .+..+-|+|..|+||||||+.+.+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHH
Confidence 35789999888 7777878776 347789999999999999999998
No 187
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.86 E-value=0.00064 Score=69.05 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=37.5
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|++..++.+.+++..+. ...+-|+|..|+||||+|+.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH
Confidence 468999999999998887653 33488999999999999999988
No 188
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.83 E-value=0.0019 Score=69.64 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=37.6
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+++|||+++++.++..|.... ..-+-|+|.+|+||||+|+.+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997642 23457999999999999999987
No 189
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.83 E-value=0.00053 Score=63.94 Aligned_cols=97 Identities=13% Similarity=0.030 Sum_probs=61.3
Q ss_pred hhHhhhcccceeeEEecCCC-CCCC-CCCcCChhHHhcCCCceEEcCCCccccc-----cChhhhccccccceecccccc
Q 048216 418 YCEKICKMFKFLRVLNLGSL-LNIP-SLKSLPSSLLSSLLNLYTLDMPFSYIDH-----TADEFWKVSKLRYLNFGAITL 490 (654)
Q Consensus 418 ~~~~~~~~l~~Lr~L~L~~~-~~lp-~i~~lP~~if~~L~~L~~L~L~~~~l~~-----lP~~i~~L~~L~~L~l~~l~~ 490 (654)
.+...+...+.|+.|+|++| .+-+ ....+...+ ...++|++|+|++|.+.. +...+...++|++|+++. ..
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NF 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-Cc
Confidence 45677888999999999998 4200 112345556 778899999999997653 445555667777777543 11
Q ss_pred cc--CCcccchhcCCCCCCCeEEE--eccC
Q 048216 491 PA--HPGKYCNSLENLNFISALHH--CYCT 516 (654)
Q Consensus 491 l~--~~~~l~~~l~~l~~L~~L~l--~~~~ 516 (654)
+. ....+...+...++|++|++ ++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 10 11224555666667777777 5553
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.79 E-value=0.0023 Score=65.33 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 109 RIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 109 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....+..++.........+.|+|..|+||||||+++++
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34445555544433456788999999999999999998
No 191
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.77 E-value=0.00073 Score=60.17 Aligned_cols=46 Identities=13% Similarity=0.009 Sum_probs=35.3
Q ss_pred CceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 102 DTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+++|+...+.++.+.+..-.....-|-|+|..|+|||++|+++++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999888642112234679999999999999999984
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.69 E-value=0.0032 Score=66.03 Aligned_cols=48 Identities=21% Similarity=0.174 Sum_probs=38.8
Q ss_pred CCCCceechhhHHHHHHHHhcC----------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIEG----------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|.+..++.|.+++... ....+-|-|+|..|+|||+||+++.+
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999887321 12246788999999999999999988
No 193
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.66 E-value=0.0055 Score=62.39 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=39.4
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-++++|.++.++.+.+++..+. ...++-+.|..|+||||+|+++.+
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 4579999999999999998653 346778889999999999999998
No 194
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.64 E-value=0.0031 Score=73.31 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=37.9
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++++||+++++++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999997753 33467999999999999999987
No 195
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=96.62 E-value=0.00067 Score=57.66 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=25.7
Q ss_pred ccccHHHHHHHHHHHHhhcCccccceehhhcccc
Q 048216 8 EGQTLAELEDFMAIIDKICCFSYDTFAISITQQK 41 (654)
Q Consensus 8 ~~~~~~~~k~~~~~~~d~~~~~~d~~~~~~~~~~ 41 (654)
.+.|+.+||+++|++||+ +|+|.++....+
T Consensus 57 vk~W~~~vrdlaYD~ED~----iD~f~~~~~~~~ 86 (115)
T 3qfl_A 57 DKLWADEVRELSYVIEDV----VDKFLVQVDGIK 86 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHhcccC
Confidence 355999999999999999 999999997654
No 196
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.61 E-value=0.0026 Score=64.76 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=38.4
Q ss_pred CCCceechhhHHHHHHHHhcC---CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEG---PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|++..++.+..++... ......|.|+|..|+||||+|+++++
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 357999999999998888631 22346788999999999999999998
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.58 E-value=0.0022 Score=66.37 Aligned_cols=48 Identities=23% Similarity=0.213 Sum_probs=37.9
Q ss_pred CCCCceechhhHHHHHHHHhcC----------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIEG----------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|.+..++.|.+.+... ....+-|-|+|..|+|||+||+++++
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 3457999999999998887321 12234578999999999999999998
No 198
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.52 E-value=0.0064 Score=60.20 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=35.6
Q ss_pred CCceechhhHHHHHHH-------Hhc-CCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDL-------LIE-GPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~-------L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..++|....+++++.. +.. ......-+-|+|..|+|||+||+++++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578888777777663 322 1345678889999999999999999983
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.51 E-value=0.0026 Score=62.64 Aligned_cols=80 Identities=23% Similarity=0.046 Sum_probs=60.9
Q ss_pred cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcCC--CceEEcCCCccccc-cCh--
Q 048216 398 DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLL--NLYTLDMPFSYIDH-TAD-- 472 (654)
Q Consensus 398 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~--~L~~L~L~~~~l~~-lP~-- 472 (654)
+++|++|.+.++.... ...++..+..+++|++|+|++| .|..+ ..+ ..+. +|++|+|++|.+.. +|.
T Consensus 169 l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N----~i~~~-~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGN----ELKSE-REL-DKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp CTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTS----CCCSG-GGG-GGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred CCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCC----ccCCc-hhh-hhcccCCcceEEccCCcCccccCcch
Confidence 6788899888887652 1123466789999999999999 88877 445 6776 99999999997753 552
Q ss_pred -----hhhccccccceec
Q 048216 473 -----EFWKVSKLRYLNF 485 (654)
Q Consensus 473 -----~i~~L~~L~~L~l 485 (654)
.+..+++|+.|+-
T Consensus 241 ~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHCTTCCEESS
T ss_pred hHHHHHHHHCcccCeECC
Confidence 3678888888873
No 200
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.50 E-value=0.0019 Score=64.97 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=43.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEe--CCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQE--SLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILH 201 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 201 (654)
-+++-|+|++|+||||||.++... .-..++|++. .+..+. . . .+.+. ....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~---------------~--~-~~le~--~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG---------------Y--N-TDFNV--FVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT---------------C--B-CCHHH--HHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh---------------h--h-cCHHH--HHHHHH
Confidence 367789999999999999998873 1223456766 333110 0 1 12223 555666
Q ss_pred HHHcCCceEEEeccc
Q 048216 202 EYVMTKRYLIVLDNF 216 (654)
Q Consensus 202 ~~L~~kr~LiVLDDv 216 (654)
+.+...+ +||+|++
T Consensus 178 ~~l~~~~-LLVIDsI 191 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSL 191 (331)
T ss_dssp HHHHHCS-EEEEECC
T ss_pred HHHhhCC-EEEEecc
Confidence 6776666 9999998
No 201
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.44 E-value=0.0077 Score=57.27 Aligned_cols=88 Identities=14% Similarity=-0.008 Sum_probs=50.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-------ccccccCh-H
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL-------SEIMKESS-E 194 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~-~ 194 (654)
.-.++.|+|.+|+||||||..+.. . .=..++|+.....++..++.+ +....+..... ....+.++ .
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 446999999999999999999886 1 123577887766667665543 33332221000 00011111 0
Q ss_pred HHHHHHHHHHcCCceEEEeccc
Q 048216 195 MKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 195 ~~~~~l~~~L~~kr~LiVLDDv 216 (654)
.....++..+..+.-+||+|..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~ 114 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSI 114 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECC
T ss_pred HHHHHHHHHhhcCCCEEEEcCc
Confidence 0333444444444679999997
No 202
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.42 E-value=0.006 Score=69.99 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=37.9
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++++||+.+++++++.|... ...-+.|+|.+|+||||+|+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999765 234567999999999999999987
No 203
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.42 E-value=0.018 Score=60.30 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=8.1
Q ss_pred cccCcccceEEEe
Q 048216 579 LEKLPVLQVLKLK 591 (654)
Q Consensus 579 l~~l~~L~~L~L~ 591 (654)
+..+.+|+.+.+.
T Consensus 293 F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 293 FYGCSSLTEVKLL 305 (394)
T ss_dssp TTTCTTCCEEEEC
T ss_pred ccccccccccccc
Confidence 4456667777665
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.42 E-value=0.0036 Score=63.26 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=36.9
Q ss_pred CceechhhHHHHHHHHhcC-------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 102 DTVGLDNRIEELLDLLIEG-------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++|.+..++.+...+... ......+.|+|..|+||||+|+.+++
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 5789999999988887653 11246899999999999999999998
No 205
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.39 E-value=0.015 Score=60.91 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=42.0
Q ss_pred CCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeE-EcCCCCccccEEEEecCCCCcceeE-cCccccccce
Q 048216 559 PSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTM-GIRAMPKLEC 636 (654)
Q Consensus 559 ~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~-~~~~~f~~L~~L~l~~~~~l~~l~~-~~~~~p~L~~ 636 (654)
.+|+.+.+..+ +....-..+.++.+|+.+.|. +. ...+. ....++.+|+.+.+.. +++.+.. ....+++|+.
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp-~~--v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP-YL--VEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKK 370 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCC-TT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeC-Cc--ccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCE
Confidence 78888888654 233333456778899998886 22 12221 1123446777777653 3554422 1233466666
Q ss_pred eeee
Q 048216 637 LIIN 640 (654)
Q Consensus 637 L~i~ 640 (654)
+.+.
T Consensus 371 i~lp 374 (394)
T 4fs7_A 371 VELP 374 (394)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6654
No 206
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.36 E-value=0.0018 Score=66.47 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=39.5
Q ss_pred CCCceechhhHHHHHHHHhcC---CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEG---PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|++..++.+..++... ......|-|+|..|+||||||+++.+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 457999999999999988752 33455688999999999999999988
No 207
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0093 Score=62.78 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=39.1
Q ss_pred CCCCCceechhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE-----------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.-.++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||+++++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999887642 113456688999999999999999998
No 208
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.31 E-value=0.0075 Score=64.55 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=36.0
Q ss_pred CCCCceechhhHHHHHHHHhc--C--------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIE--G--------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|.++.++++.+.+.. . -.-.+-|.|+|.+|.||||||+++.+
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999888888776532 1 01123478999999999999999998
No 209
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.012 Score=62.19 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=39.0
Q ss_pred CCCCCceechhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE-----------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.-.++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||+++++
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3345788999999998887643 113457788999999999999999999
No 210
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.27 E-value=0.00089 Score=59.47 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=33.6
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+++|++..++++.+.+..-.....-|-|+|..|.|||++|+++++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 46889999999988887642111234679999999999999999983
No 211
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.26 E-value=0.0069 Score=69.47 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=37.8
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+++||+++.+++++..|.... ..-+-++|.+|+||||+|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997752 23467999999999999999987
No 212
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.21 E-value=0.0052 Score=59.19 Aligned_cols=58 Identities=9% Similarity=0.022 Sum_probs=38.1
Q ss_pred CCceec---hhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEe
Q 048216 101 RDTVGL---DNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQE 162 (654)
Q Consensus 101 ~~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 162 (654)
++++|. +..++.+..++... ..+.+.|+|.+|+||||||+.+++ ..........++..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPL 88 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEH
Confidence 456663 35555666655543 457788999999999999999988 33322234456654
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.19 E-value=0.004 Score=67.14 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCceechhhHHHHHHHHhcC-----------CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHH
Q 048216 101 RDTVGLDNRIEELLDLLIEG-----------PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDAD 169 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 169 (654)
.+++|.+..+++|.+++... -...+-|-|+|.+|.|||++|+++.+ +.... ++.++ ..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~-----fv~vn----~~ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF-----FFLIN----GP 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSE-----EEEEE----HH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCC-----EEEEE----ch
Confidence 46899999999998887531 12345688999999999999999988 33222 23222 11
Q ss_pred HHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHcCCceEEEeccc
Q 048216 170 QLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 170 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDv 216 (654)
.+. ..+. ...... ....+...-.++..+|+||++
T Consensus 273 ~l~----~~~~-------g~~~~~--~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 273 EIM----SKLA-------GESESN--LRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp HHH----TSCT-------THHHHH--HHHHHHHHHHTCSEEEEEESH
T ss_pred Hhh----hhhc-------chhHHH--HHHHHHHHHhcCCcEEEecch
Confidence 111 1111 111122 444455555677889999998
No 214
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0084 Score=62.29 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=38.0
Q ss_pred CCCCceechhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIE-----------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-+++.|.++.+++|.+.+.- +-...+=|-++|++|.|||.||+++++
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 335688999999999877642 112346688999999999999999999
No 215
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.19 E-value=0.0038 Score=64.85 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=39.1
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+++|++..++.+.+.+..+. ....+.|+|..|+||||+|+.+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997653 2357889999999999999999873
No 216
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.18 E-value=0.0032 Score=63.67 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=30.2
Q ss_pred chhhHHHHHHHHhcCCC-CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 106 LDNRIEELLDLLIEGPP-QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 106 r~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+....+.+.+++..... ....+-|+|..|+|||+||+++++.
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33445555666665322 2467889999999999999999983
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.011 Score=62.21 Aligned_cols=48 Identities=23% Similarity=0.217 Sum_probs=38.4
Q ss_pred CCCCceechhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIE-----------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||+||+++++
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 345788999999999877532 113467788999999999999999999
No 218
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.10 E-value=0.0058 Score=57.52 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHhcC-CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 106 LDNRIEELLDLLIEG-PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 106 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
|++.+++|.+.+... .....+|+|.|..|+||||+|+.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556778888887753 34568999999999999999999876
No 219
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.06 E-value=0.0044 Score=58.74 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 109 RIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 109 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++|.+.+........+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45555565554334678999999999999999999887
No 220
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.0047 Score=63.57 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=38.8
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-.+++|+++.++.+..++..+. ...+.|+|..|+||||+|+.+.+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999987763 223889999999999999999883
No 221
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.012 Score=61.91 Aligned_cols=49 Identities=27% Similarity=0.283 Sum_probs=39.0
Q ss_pred CCCCCceechhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE-----------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.-.++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||+++++
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3445789999999999877532 113457788999999999999999999
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.97 E-value=0.0096 Score=68.43 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=39.6
Q ss_pred CCCCCceechhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE-----------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.-.+++|.++.+++|.+++.. .-.....|.|+|..|+||||||+++.+
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3445799999999999888753 112346799999999999999999998
No 223
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.92 E-value=0.0041 Score=63.78 Aligned_cols=46 Identities=24% Similarity=0.198 Sum_probs=36.8
Q ss_pred CCceechhhHHHHHHHHhcC---CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG---PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++++|.+..++.+...+..+ +.....+.|+|..|+||||||+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 46789888888877666542 23456799999999999999999998
No 224
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.84 E-value=0.017 Score=59.23 Aligned_cols=85 Identities=19% Similarity=0.132 Sum_probs=53.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---ccccccChHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL---SEIMKESSEMKKII 199 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~ 199 (654)
.-+++.|+|.+|+||||||..+... ....=..++|+.....++.. .++.++..... ....+.++ ....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~--~l~~ 130 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQ--ALEI 130 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHH--HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHH--HHHH
Confidence 4589999999999999999988863 22111246788877777754 44555443221 11122233 4455
Q ss_pred HHHHHc-CCceEEEeccc
Q 048216 200 LHEYVM-TKRYLIVLDNF 216 (654)
Q Consensus 200 l~~~L~-~kr~LiVLDDv 216 (654)
+...++ .+--++|+|.+
T Consensus 131 ~~~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 131 VDELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHHHTSCCSEEEEECT
T ss_pred HHHHhhhcCCCeEEehHh
Confidence 555554 45568999997
No 225
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.82 E-value=0.022 Score=54.93 Aligned_cols=93 Identities=9% Similarity=0.055 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----c---cccccc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKH----YFDCRAWVQESLPYDADQLLYDIIKLVMPSRR----L---SEIMKE 191 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~ 191 (654)
.-.+++|+|.+|+||||||+.+........ .-..++|+.....++..++. .+++.++.... . ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 347999999999999999998876321211 12567888877766665543 34444443210 0 001111
Q ss_pred Ch-HHHHHHHHHHHc-CCceEEEeccc
Q 048216 192 SS-EMKKIILHEYVM-TKRYLIVLDNF 216 (654)
Q Consensus 192 ~~-~~~~~~l~~~L~-~kr~LiVLDDv 216 (654)
.. ......+.+.+. .+--+||+|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 11 002233555554 46679999997
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.74 E-value=0.0049 Score=62.12 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=37.2
Q ss_pred CCceechhhHHHHHHHHhcC------------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG------------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.++.++.+...+... .....-+-|+|.+|+|||++|+++.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998888640 11245677999999999999999998
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.69 E-value=0.0053 Score=60.53 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=34.0
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..++|.+..+.++.+.+..-.....-|-|+|..|+|||++|+++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45899999999988777542112245679999999999999999983
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.68 E-value=0.017 Score=65.67 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=59.4
Q ss_pred CCCCCceechhhHHHHHHHHhc----C-------CCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE----G-------PPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY 166 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 166 (654)
+.-+++.|.++.+++|.+.+.- . -...+-|-++|.+|.|||+||++|++ +...+| +.|..
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~---- 271 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING---- 271 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEH----
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEh----
Confidence 4445788999998888877632 1 13456788999999999999999999 443332 22321
Q ss_pred CHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHHHHcCCceEEEecccc
Q 048216 167 DADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHEYVMTKRYLIVLDNFE 217 (654)
Q Consensus 167 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDDvw 217 (654)
.++. ... ....+.. +...+...-+....+|++|++.
T Consensus 272 --~~l~-------sk~----~gese~~--lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 272 --PEIM-------SKL----AGESESN--LRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp --HHHH-------SSC----TTHHHHH--HHHHHHHHTTSCSEEEEEESGG
T ss_pred --HHhh-------ccc----chHHHHH--HHHHHHHHHHcCCeEEEEehhc
Confidence 1111 111 1111222 4444445556678999999983
No 229
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.68 E-value=0.02 Score=61.59 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=36.7
Q ss_pred CCCCCceechhhHHHHHHHHhc--CC--------CCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE--GP--------PQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..-.+++|.++.++++.++... .. .-.+=|.|+|..|.||||||+++.+.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456799999888887766532 10 11223899999999999999999983
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.025 Score=58.99 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=38.8
Q ss_pred CCCCCceechhhHHHHHHHHhc-----------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE-----------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.-+++.|.++.+++|.+.+.. +-...+=|-++|++|.|||.||+++++
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 3445688999999999887642 113456788999999999999999999
No 231
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.59 E-value=0.012 Score=58.86 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=28.2
Q ss_pred hHHHHHHHHhc----CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 109 RIEELLDLLIE----GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 109 ~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-++.|.+.+.. ......+|+|+|..|+||||||+.+..
T Consensus 12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444433 345678999999999999999998876
No 232
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.58 E-value=0.018 Score=59.31 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=51.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccccChHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLS---EIMKESSEMKKII 199 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~ 199 (654)
.-+++.|.|.+|+||||||..+... ....=..++|++....++... +..++...... ...+.++ +...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~--~~~~ 132 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQ--ALEI 132 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHH--HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHH--HHHH
Confidence 4478999999999999999887763 222223678999888777542 34444332110 1112223 4444
Q ss_pred HHHHHc-CCceEEEeccc
Q 048216 200 LHEYVM-TKRYLIVLDNF 216 (654)
Q Consensus 200 l~~~L~-~kr~LiVLDDv 216 (654)
++...+ .+--+||+|.+
T Consensus 133 ~~~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHHHTCCSEEEEECG
T ss_pred HHHHHhccCCCEEEEcCH
Confidence 444433 44559999997
No 233
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.57 E-value=0.0053 Score=63.31 Aligned_cols=44 Identities=9% Similarity=-0.051 Sum_probs=36.1
Q ss_pred CCceechhhHHHHHHHH-hcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLL-IEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|.+..++.+.+++ ..+. ... +.|+|..|+||||+|+.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 46899999999998888 4432 233 89999999999999998877
No 234
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.52 E-value=0.0056 Score=60.40 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=36.2
Q ss_pred CCCceechhhHHHHHHHHhc----------CCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 100 DRDTVGLDNRIEELLDLLIE----------GPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-.+++|.++.++.+.+.+.. +....+-|.|+|..|+|||+||+++++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 45799999888888876641 1111233779999999999999999983
No 235
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.48 E-value=0.026 Score=58.02 Aligned_cols=85 Identities=16% Similarity=0.091 Sum_probs=51.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---ccccccChHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL---SEIMKESSEMKKII 199 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~ 199 (654)
.-+++.|+|.+|+||||||..+... ....=..++|++....++.. .++.++..... ....+.++ ....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~--~l~~ 130 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQ--ALEI 130 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHH--HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHH--HHHH
Confidence 4579999999999999999888752 22111357889888777754 24444433211 01112233 4444
Q ss_pred HHHHHc-CCceEEEeccc
Q 048216 200 LHEYVM-TKRYLIVLDNF 216 (654)
Q Consensus 200 l~~~L~-~kr~LiVLDDv 216 (654)
++...+ .+--+||+|.+
T Consensus 131 ~~~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSV 148 (349)
T ss_dssp HHHHHTTTCCSEEEEECG
T ss_pred HHHHHhcCCCCEEEEcCh
Confidence 444443 34569999998
No 236
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.44 E-value=0.0066 Score=55.23 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=18.9
Q ss_pred EEEEEEcCCCchHHHHHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEA 144 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v 144 (654)
.+|.|.|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 237
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.39 E-value=0.048 Score=55.91 Aligned_cols=94 Identities=7% Similarity=0.016 Sum_probs=56.7
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHccccccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----c---ccccc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNSNYVKH----YFDCRAWVQESLPYDADQLLYDIIKLVMPSRR----L---SEIMK 190 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 190 (654)
..-.++.|+|.+|+||||||..+........ .=..++|++....|+..++.. ++..++.... . ....+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 3558999999999999999988876322211 124678999888888877654 3444443210 0 01111
Q ss_pred cCh-HHHHHHHHHHHc---CCceEEEeccc
Q 048216 191 ESS-EMKKIILHEYVM---TKRYLIVLDNF 216 (654)
Q Consensus 191 ~~~-~~~~~~l~~~L~---~kr~LiVLDDv 216 (654)
.++ ..+...+.+.++ .+--+||+|.+
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 222 003334455554 45669999998
No 238
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.38 E-value=0.029 Score=57.94 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---ccccccChHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRL---SEIMKESSEMKKII 199 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~ 199 (654)
.-+++-|.|.+|+||||||..+... ....=..++|++....++... ++.++..... ....+.++ +...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~--~l~~ 143 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQ--ALEI 143 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHH--HHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHH--HHHH
Confidence 3468889999999999999877653 222223678999888777542 3444432211 01112233 5555
Q ss_pred HHHHHcC-CceEEEeccc
Q 048216 200 LHEYVMT-KRYLIVLDNF 216 (654)
Q Consensus 200 l~~~L~~-kr~LiVLDDv 216 (654)
+....+. +--+||+|.+
T Consensus 144 l~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHHHTTTCCSEEEEECT
T ss_pred HHHHHhcCCCCEEEEeCh
Confidence 6555543 4459999998
No 239
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.35 E-value=0.0075 Score=54.83 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 240
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.32 E-value=0.0089 Score=60.31 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=37.1
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
++++|....+.++.+.+..-.....-|-|+|..|+|||++|+++++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 46899999999998888653222345679999999999999999983
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.26 E-value=0.01 Score=55.06 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|+|+.|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999987
No 242
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.22 E-value=0.013 Score=60.61 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=35.9
Q ss_pred CceechhhHHHHHHHHh-------------cCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 102 DTVGLDNRIEELLDLLI-------------EGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 102 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++|.+..++.+...+. ........|.++|.+|+|||++|+++++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 37899999999888873 1112345788999999999999999998
No 243
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.22 E-value=0.0089 Score=56.12 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|+|+.|+||||+|+.+.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 244
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.21 E-value=0.018 Score=58.71 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=33.0
Q ss_pred eechhhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 104 VGLDNRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 104 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
|+.+.-.+++++.+... ......|.|+|+.|+||||+|+.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 45566677777776532 33567799999999999999998887
No 245
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.21 E-value=0.013 Score=60.17 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=36.9
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|.+..++.|...+..+. +..+.++|..|+||||+|+.+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 458899998999888887763 33389999999999999999987
No 246
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.21 E-value=0.009 Score=54.76 Aligned_cols=22 Identities=5% Similarity=0.021 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 247
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.17 E-value=0.017 Score=57.31 Aligned_cols=48 Identities=23% Similarity=0.138 Sum_probs=33.6
Q ss_pred CCCCceechhhHHHHHHHHhc---C-------C-CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 99 KDRDTVGLDNRIEELLDLLIE---G-------P-PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 99 ~~~~~vGr~~~~~~l~~~L~~---~-------~-~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.++.|.++.++.|.+.+.. . + .-.+=+.++|..|.||||||+++..
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 345788999999888776531 1 0 1112299999999999999999998
No 248
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.15 E-value=0.019 Score=61.42 Aligned_cols=48 Identities=21% Similarity=0.101 Sum_probs=36.8
Q ss_pred CCCceechhhHHHHHHHH---hcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 100 DRDTVGLDNRIEELLDLL---IEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..+++|.++.++.+..++ ..+....+-+-++|.+|.|||++|+++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 367999999888665544 344333456889999999999999999983
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.14 E-value=0.064 Score=54.49 Aligned_cols=93 Identities=12% Similarity=0.057 Sum_probs=56.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCC----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----c---cccccc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHY----FDCRAWVQESLPYDADQLLYDIIKLVMPSRR----L---SEIMKE 191 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~ 191 (654)
.-.++.|+|.+|+||||||..+......... =..++|++....|+..++.+ +++.++.... . ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 3478999999999999999888763221111 24678999888888877654 3455543211 0 001111
Q ss_pred Ch-HHHHHHHHHHHc--CCceEEEeccc
Q 048216 192 SS-EMKKIILHEYVM--TKRYLIVLDNF 216 (654)
Q Consensus 192 ~~-~~~~~~l~~~L~--~kr~LiVLDDv 216 (654)
+. ..+...+...++ .+--+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 11 003445555554 45679999998
No 250
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.08 E-value=0.05 Score=55.22 Aligned_cols=93 Identities=9% Similarity=0.074 Sum_probs=56.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccC---------Cc-----ceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKH---------YF-----DCRAWVQESLPYDADQLLYDIIKLVMPSRR---- 184 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---- 184 (654)
.-.++-|+|.+|+||||||..+........ .. ..++|++....|+..++.+. ++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 457999999999999999988775322211 11 46789998888888877643 455543321
Q ss_pred c---ccccccCh-HHHHHHHHHHHcC--CceEEEeccc
Q 048216 185 L---SEIMKESS-EMKKIILHEYVMT--KRYLIVLDNF 216 (654)
Q Consensus 185 ~---~~~~~~~~-~~~~~~l~~~L~~--kr~LiVLDDv 216 (654)
. ....+.+. ..+...+.+.++. +--+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0 01011111 0033455555553 4569999997
No 251
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.06 E-value=0.13 Score=53.64 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=34.9
Q ss_pred CCccEEEEEeeccCCCCccccccCcccceEEEeecccCCCeeE-EcCCCCccccEEEEecCCCCcceeE-cCccccccce
Q 048216 559 PSLTHLSFSNIELMDDPMPALEKLPVLQVLKLKQNSYSGRKLA-CSSDGFPKLKVLHLKSMLWLEEWTM-GIRAMPKLEC 636 (654)
Q Consensus 559 ~~L~~L~L~~~~l~~~~l~~l~~l~~L~~L~L~~~~~~~~~l~-~~~~~f~~L~~L~l~~~~~l~~l~~-~~~~~p~L~~ 636 (654)
++|+.+.+... +....-..+.++.+|+.+.|.. . ...+. ....++.+|+.+.|.. +++.+.. ....+++|+.
T Consensus 288 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 288 PALQDIEFSSR-ITELPESVFAGCISLKSIDIPE-G--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-T--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCE
T ss_pred cccccccCCCc-ccccCceeecCCCCcCEEEeCC-c--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCE
Confidence 45555555322 2222223455666777776652 1 11111 0122345677776643 3444421 1234566776
Q ss_pred eeee
Q 048216 637 LIIN 640 (654)
Q Consensus 637 L~i~ 640 (654)
+.+.
T Consensus 362 i~~~ 365 (394)
T 4gt6_A 362 IEYS 365 (394)
T ss_dssp EEES
T ss_pred EEEC
Confidence 6653
No 252
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.06 E-value=0.015 Score=56.79 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=34.2
Q ss_pred CCCceechhhHHHHHHHHhc--C-------C-CCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 100 DRDTVGLDNRIEELLDLLIE--G-------P-PQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-++++|.++.+.++.++... . + .-.+=+.|+|..|+||||||+.+.+.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45789988777777655431 1 0 01122899999999999999999983
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.03 E-value=0.012 Score=53.95 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 254
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.99 E-value=0.015 Score=59.23 Aligned_cols=42 Identities=24% Similarity=0.191 Sum_probs=36.5
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|+++.++.+...+..+ .-+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence 46899999999998888775 2577999999999999999988
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.93 E-value=0.0096 Score=54.27 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|+|+|+.|+||||+|+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 256
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.86 E-value=0.015 Score=54.55 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|+.|.||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999987
No 257
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.85 E-value=0.013 Score=54.09 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999987
No 258
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.85 E-value=0.03 Score=59.29 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=34.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHH
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIK 177 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~ 177 (654)
..++|+|..|+||||||+.+..+.... .-+.++++-+.+.. ...++.+++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhh
Confidence 368999999999999999888732211 22455666677664 34455555543
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.83 E-value=0.013 Score=54.10 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+.|.|+|+.|+||||+|+.+.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.79 E-value=0.048 Score=54.58 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988875
No 261
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.75 E-value=0.014 Score=52.96 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|.|+.|+||||+|+.+.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 262
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.74 E-value=0.011 Score=52.60 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.-..++|+|..|.|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999983
No 263
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.73 E-value=0.0086 Score=61.47 Aligned_cols=51 Identities=10% Similarity=-0.127 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcccccc---CCcceeEEEEeCCCC
Q 048216 112 ELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVK---HYFDCRAWVQESLPY 166 (654)
Q Consensus 112 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~ 166 (654)
++++.+..-. .-..++|+|..|+|||||++.+.+ .+. ..+++ +++-+.+..
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEE-EEEEESSCH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeE-EEEEecCCh
Confidence 3445444322 346899999999999999998876 222 22333 346666654
No 264
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.73 E-value=0.016 Score=52.96 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 265
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.72 E-value=0.016 Score=53.73 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 266
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.69 E-value=0.022 Score=61.46 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=36.4
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.++.++.+...+..+ .-|-|+|.+|+|||+||+++.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHH
Confidence 35889999999998888776 3577999999999999999998
No 267
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.67 E-value=0.022 Score=56.54 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=35.7
Q ss_pred CCCCCceechhhHHHHHHHHhc--C-------C-CCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 98 FKDRDTVGLDNRIEELLDLLIE--G-------P-PQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 98 ~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..-++++|.++.++++.++... . + .-.+=|.|+|..|+||||||+.+.+.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 3445799998887777665432 1 0 01122899999999999999999983
No 268
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.66 E-value=0.019 Score=54.13 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|..|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 269
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.65 E-value=0.018 Score=53.86 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....+|+|+|+.|+||||+|+.+.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999988
No 270
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.65 E-value=0.12 Score=51.90 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHhcC------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 107 DNRIEELLDLLIEG------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 107 ~~~~~~l~~~L~~~------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.-.++|.+.|... .....+|+|+|.+|+||||++..+..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 34455555655432 13468999999999999999988876
No 271
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.62 E-value=0.012 Score=55.21 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.61 E-value=0.016 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|+.|+||||||+.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 273
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.60 E-value=0.031 Score=55.79 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhcC---CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 108 NRIEELLDLLIEG---PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 108 ~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+++++..+..+ .....+|.|.|++|+||||+|+.+.+
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344444444443 34568999999999999999999987
No 274
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.60 E-value=0.018 Score=53.40 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999975
No 275
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.60 E-value=0.019 Score=53.20 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999987
No 276
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.59 E-value=0.018 Score=58.23 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAY 145 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~ 145 (654)
+.+||+|.|-|||||||.|.-+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHH
Confidence 57999999999999999775443
No 277
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.59 E-value=0.018 Score=56.25 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....+|+|.|+.|+||||+|+.+.+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999877
No 278
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.57 E-value=0.029 Score=54.79 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHhcC---CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 107 DNRIEELLDLLIEG---PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 107 ~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+...++++..+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44445555555543 24568999999999999999999987
No 279
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.57 E-value=0.12 Score=51.83 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=30.9
Q ss_pred echhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 105 GLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 105 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
|-++.++.+.+.+..+. ....-++|..|.||||+|+.+.+
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHH
Confidence 34556677777777664 67888999999999999999987
No 280
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.57 E-value=0.016 Score=54.17 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 281
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.52 E-value=0.059 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999885
No 282
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.47 E-value=0.017 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 283
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.47 E-value=0.022 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 284
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.46 E-value=0.018 Score=54.06 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.46 E-value=0.021 Score=53.99 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 286
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.46 E-value=0.084 Score=54.70 Aligned_cols=75 Identities=8% Similarity=0.006 Sum_probs=39.8
Q ss_pred CceeEEEEecCCCCccccccc--cCceeEEEEecCCCCCCChhhhHhhhcccceeeEEecCCCCCCCCCCcCChhHHhcC
Q 048216 377 ENVKRFTAHEKLNDFGFLDDF--DSFLHSLLYLTSGSQYLDPTYCEKICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSL 454 (654)
Q Consensus 377 ~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L 454 (654)
.+++.+.+. .+....-...+ +++|+++.+...-. .+....|.+++ |..+.+.. .+..++...|..
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~v~-----~Ig~~aF~~c~-l~~i~~~~-----~l~~I~~~aF~~- 112 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVASTVT-----SIGDGAFADTK-LQSYTGME-----RVKKFGDYVFQG- 112 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTTCC-----EECTTTTTTCC-CCEEEECT-----TCCEECTTTTTT-
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCcce-----EechhhhcCCC-CceEECCc-----eeeEeccceecc-
Confidence 456666665 43333222233 67777777743321 23445566663 44444432 456666666444
Q ss_pred CCceEEcCCC
Q 048216 455 LNLYTLDMPF 464 (654)
Q Consensus 455 ~~L~~L~L~~ 464 (654)
.+|+.+.+..
T Consensus 113 ~~L~~i~lp~ 122 (379)
T 4h09_A 113 TDLDDFEFPG 122 (379)
T ss_dssp CCCSEEECCT
T ss_pred CCcccccCCC
Confidence 4677777754
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.44 E-value=0.016 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++|.|+|+.|+||||+|+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999987
No 288
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.44 E-value=0.019 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47899999999999999998664
No 289
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.43 E-value=0.11 Score=54.80 Aligned_cols=39 Identities=21% Similarity=0.087 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhcC-------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 108 NRIEELLDLLIEG-------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 108 ~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++.++|... ....++|.|+|.||+||||+|..+..
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455666666432 13578999999999999999877764
No 290
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.41 E-value=0.021 Score=52.78 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....|+|+|+.|+||||+|+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 291
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.37 E-value=0.032 Score=58.03 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=35.6
Q ss_pred CCceechhhHHHHHHHHhc----------------------------CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIE----------------------------GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.++.++.|...+.. .......|-++|..|+||||+|+++.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3578999999988877721 011234678999999999999999998
No 292
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.36 E-value=0.021 Score=53.57 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+|+|+|..|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999999987
No 293
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.35 E-value=0.021 Score=53.61 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 294
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.35 E-value=0.021 Score=53.08 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.32 E-value=0.022 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 296
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.30 E-value=0.038 Score=55.87 Aligned_cols=39 Identities=8% Similarity=0.160 Sum_probs=28.1
Q ss_pred hhHHHHHHHHhcC--CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 108 NRIEELLDLLIEG--PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 108 ~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.....+...+... .....+|||.|..|+||||||+.+..
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3344444344333 34677999999999999999999876
No 297
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.29 E-value=0.022 Score=55.73 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5799999999999999999986
No 298
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.29 E-value=0.023 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 299
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.28 E-value=0.021 Score=54.61 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|+|+|..|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.27 E-value=0.035 Score=53.90 Aligned_cols=40 Identities=13% Similarity=-0.060 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 107 DNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 107 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.....++.+..........+|.|.|+.|+||||+|+.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344444443333233567899999999999999999976
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.26 E-value=0.025 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 302
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.25 E-value=0.18 Score=50.47 Aligned_cols=82 Identities=6% Similarity=0.092 Sum_probs=50.6
Q ss_pred EEEEEcCCCchHHHHHHHHHccccccCCc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---ccccccChHHHHHHH
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSNYVKHYF--DCRAWVQESLPYDADQLLYDIIKLVMPSRRL---SEIMKESSEMKKIIL 200 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~l 200 (654)
++-|.|.+|+||||||-.+... ....+ ..++||+-...++... +++++..... ....+.++ ..-.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~--~~l~i 100 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQ--LRIDM 100 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHH--HHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHH--HHHHH
Confidence 7899999999999999776652 22222 3578998888887642 6667654332 11122222 31222
Q ss_pred HHHH----cCCceEEEeccc
Q 048216 201 HEYV----MTKRYLIVLDNF 216 (654)
Q Consensus 201 ~~~L----~~kr~LiVLDDv 216 (654)
.+.+ .++--+||+|-|
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSL 120 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECS
T ss_pred HHHHHHhhccCceEEEEecc
Confidence 2333 346679999998
No 303
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.22 E-value=0.019 Score=54.00 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.|+|+.|+|||||++.+.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.22 E-value=0.018 Score=52.68 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.21 E-value=0.023 Score=53.66 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999987
No 306
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.17 E-value=0.046 Score=52.07 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=28.1
Q ss_pred hhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 108 NRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 108 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
+..+.+...+... ...+|.|+|.+|+|||||+..+...
T Consensus 24 ~~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 24 RLADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344555544433 5789999999999999999888763
No 307
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.14 E-value=0.025 Score=55.48 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 308
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.12 E-value=0.024 Score=51.45 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|+|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 309
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.11 E-value=0.02 Score=53.04 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++++|+|..|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 310
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.11 E-value=0.018 Score=53.07 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999987
No 311
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.10 E-value=0.026 Score=57.82 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=33.4
Q ss_pred CCCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 100 DRDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 100 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|.+..++.+...+.... ..-|-|+|..|+|||++|+++.+
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 3468999887666554444321 22388999999999999999997
No 312
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.09 E-value=0.026 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 313
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.09 E-value=0.16 Score=53.71 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=60.6
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCC------CC
Q 048216 112 ELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPS------RR 184 (654)
Q Consensus 112 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~ 184 (654)
++++.|..=. +-.-++|.|-.|+|||||++.+.+.. .+.+-+.++++-+.+.. .+.++.+++...=... ..
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 3455554311 23678999999999999999888731 22344667888888775 4556777776542221 11
Q ss_pred c--ccccccCh------HHHHHHHHHHH---cCCceEEEecccc
Q 048216 185 L--SEIMKESS------EMKKIILHEYV---MTKRYLIVLDNFE 217 (654)
Q Consensus 185 ~--~~~~~~~~------~~~~~~l~~~L---~~kr~LiVLDDvw 217 (654)
. ....++.. ....-.+.+++ ++|.+||++||+-
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 11111111 00122233443 4799999999993
No 314
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.07 E-value=0.054 Score=55.52 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 110 IEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 110 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
--++++.+..=. .-.-++|+|..|+|||||++.+.+
T Consensus 162 GiraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 162 STRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred cchhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence 345666665422 346789999999999999998887
No 315
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.05 E-value=0.024 Score=52.83 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|.|+.|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 316
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.03 E-value=0.026 Score=51.89 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 317
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.01 E-value=0.028 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|.|+.|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 318
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.00 E-value=0.12 Score=54.21 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988876
No 319
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.00 E-value=0.029 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+|+|.|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 320
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.99 E-value=0.026 Score=54.80 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999994
No 321
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.98 E-value=0.021 Score=51.86 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 322
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.97 E-value=0.17 Score=51.43 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 107 DNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 107 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++..+.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH
Confidence 455667777776552 345788999999999999998876
No 323
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.97 E-value=0.027 Score=50.91 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 324
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.96 E-value=0.028 Score=52.87 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 325
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.96 E-value=0.035 Score=52.70 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=31.4
Q ss_pred eechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 104 VGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 104 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-+.++..+.+.+.+... ...+|+|+|.+|+|||||+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 12 AENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455566666655433 5789999999999999999888763
No 326
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.91 E-value=0.021 Score=52.44 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=17.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 327
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.87 E-value=0.056 Score=55.70 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 110 IEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 110 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554445678999999999999999988764
No 328
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.86 E-value=0.029 Score=51.99 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 329
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.84 E-value=0.018 Score=55.01 Aligned_cols=87 Identities=10% Similarity=-0.059 Sum_probs=44.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccccChHHHHHHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLVMPSRRLSEIMKESSEMKKIILHE 202 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 202 (654)
.-.++.|+|..|.||||+|..+.+ +...+-..++.+.-.. +.. -...|++.++............+ +...+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~--i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPE--ILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHH--HHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEecc--Cch-HHHHHHHhcCCCccccccCCHHH--HHHHHHH
Confidence 347899999999999998876665 2222211223332222 111 11233444433221111122223 4444554
Q ss_pred HHcCCce-EEEeccc
Q 048216 203 YVMTKRY-LIVLDNF 216 (654)
Q Consensus 203 ~L~~kr~-LiVLDDv 216 (654)
.+.+.++ +||+|.+
T Consensus 84 ~~~~~~~dvViIDEa 98 (223)
T 2b8t_A 84 NSFNDETKVIGIDEV 98 (223)
T ss_dssp TTSCTTCCEEEECSG
T ss_pred HhhCCCCCEEEEecC
Confidence 4444555 9999997
No 330
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.82 E-value=0.033 Score=56.21 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3568999999999999999999887
No 331
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.80 E-value=0.034 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.|.|+.|+||||+|+.+.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 332
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.76 E-value=0.05 Score=55.24 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....+|+|+|..|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998876
No 333
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.74 E-value=0.025 Score=53.03 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++++|+|..|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36799999999999999999976
No 334
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.69 E-value=0.037 Score=53.73 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|||.|..|.||||||+.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 335
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.67 E-value=0.031 Score=55.97 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+.+.++|.+|+|||+||+++++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999998
No 336
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.64 E-value=0.027 Score=52.17 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
|.|.|+|+.|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987
No 337
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.64 E-value=0.055 Score=57.06 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=36.2
Q ss_pred CCceechhhHHHHHHHHhcC------------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG------------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.++.++.+...+... +...+-|.++|++|+||||+|+++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999987776321 11345688999999999999999998
No 338
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.62 E-value=0.021 Score=53.99 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 339
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.62 E-value=0.035 Score=52.38 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 340
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.62 E-value=0.039 Score=50.55 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|.|+.|+||||+|+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999987
No 341
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.60 E-value=0.1 Score=49.65 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=32.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcccccc---C-CcceeEEEEeCCCCCHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVK---H-YFDCRAWVQESLPYDADQ 170 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~ 170 (654)
.-.+++|+|..|+|||||++.+....... . .-...+|+.-...+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 75 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 75 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH
Confidence 44799999999999999999997621111 1 134577877555555443
No 342
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.57 E-value=0.034 Score=54.26 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|+.|.||||+++.+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999996
No 343
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.53 E-value=0.029 Score=51.24 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|+|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999876
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.50 E-value=0.036 Score=52.74 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 345
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.50 E-value=0.036 Score=52.28 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999987
No 346
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.50 E-value=0.043 Score=54.56 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999874
No 347
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.50 E-value=0.077 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 348
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.48 E-value=0.036 Score=52.17 Aligned_cols=23 Identities=4% Similarity=-0.189 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 349
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.45 E-value=0.035 Score=53.12 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|.|.|+.|+||||+|+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 350
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.45 E-value=0.038 Score=51.34 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 351
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.44 E-value=0.044 Score=49.26 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 352
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.40 E-value=0.038 Score=51.60 Aligned_cols=24 Identities=4% Similarity=0.206 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|+|+|..|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999987
No 353
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.33 E-value=0.084 Score=53.18 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....+|||+|..|.|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 354
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.33 E-value=0.046 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 355
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.32 E-value=0.047 Score=51.56 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999887
No 356
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.25 E-value=0.04 Score=51.53 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.22 E-value=0.045 Score=55.01 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|.+|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999886
No 358
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.18 E-value=0.035 Score=52.85 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 359
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.18 E-value=0.29 Score=51.92 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=61.6
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCC-CHHHHHHHHHHHhCCC-------CC
Q 048216 113 LLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPY-DADQLLYDIIKLVMPS-------RR 184 (654)
Q Consensus 113 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~ 184 (654)
+++.|..=. +-.-++|.|-.|+|||+|++.+.+.. .+.+-+.++++-+.+.. .+.++.+++...=... ..
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 344444321 33568999999999999998888731 23345788888888876 4556777776542111 11
Q ss_pred c--ccccccCh------HHHHHHHHHHHc---CCceEEEecccc
Q 048216 185 L--SEIMKESS------EMKKIILHEYVM---TKRYLIVLDNFE 217 (654)
Q Consensus 185 ~--~~~~~~~~------~~~~~~l~~~L~---~kr~LiVLDDvw 217 (654)
. ....++.. ....-.+.++++ +|.+||++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 11111111 002333455554 589999999993
No 360
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.10 E-value=0.035 Score=54.03 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|+|+|+.|.||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 361
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.09 E-value=0.039 Score=52.53 Aligned_cols=23 Identities=9% Similarity=-0.140 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 362
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.01 E-value=0.047 Score=51.62 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 363
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.99 E-value=0.057 Score=51.26 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+.+||-|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999999999987
No 364
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.89 E-value=0.051 Score=50.93 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 365
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.84 E-value=0.12 Score=54.26 Aligned_cols=90 Identities=13% Similarity=0.249 Sum_probs=52.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCcc----eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh----
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYFD----CRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS---- 193 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~---- 193 (654)
.-++|.|-.|+|||||+..+.+.... +-+ .++++-+.+.. .+.++.+++...=.....- ....+...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 44789999999999999999985433 223 55666677654 4556666654431000000 01111111
Q ss_pred --HHHHHHHHHHHc---CCceEEEeccc
Q 048216 194 --EMKKIILHEYVM---TKRYLIVLDNF 216 (654)
Q Consensus 194 --~~~~~~l~~~L~---~kr~LiVLDDv 216 (654)
....-.+.++++ +|.+||++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 002223455553 78999999999
No 366
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.83 E-value=0.045 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHcc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+++|+|..|+|||||++.+...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999998873
No 367
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.83 E-value=0.052 Score=51.37 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 368
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.79 E-value=0.065 Score=58.61 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=36.4
Q ss_pred CCceechhhHHHHHHHHhc----CCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIE----GPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|.++.++.+.+.+.- ......++.++|..|+||||||+.+.+
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3588988888888665532 123456899999999999999999998
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.77 E-value=0.061 Score=53.98 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=29.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDA 168 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 168 (654)
...+++|+|..|+||||+++.+..- .+. -...+.+.-.+.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~--l~~-~~g~V~l~g~d~~r~ 141 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR--LKN-EGTKVLMAAGDTFRA 141 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH--HHH-TTCCEEEECCCCSCH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHH-cCCeEEEEeecccch
Confidence 4579999999999999999998872 221 134555544444554
No 370
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.76 E-value=0.072 Score=46.06 Aligned_cols=35 Identities=29% Similarity=0.233 Sum_probs=25.8
Q ss_pred eeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCcc
Q 048216 428 FLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSY 466 (654)
Q Consensus 428 ~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~ 466 (654)
+|+.|+|++| .|..+|..+|..+.+|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N----~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGN----NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTS----CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCC----cCCccChhhhhhccccCEEEecCCC
Confidence 4677777777 7777777776777777777777763
No 371
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.67 E-value=0.1 Score=53.57 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=29.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDA 168 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 168 (654)
...+|+|+|..|+||||+++.+..- .+. -...+.+.-.+.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~--l~~-~~G~V~l~g~D~~r~ 198 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR--LKN-EGTKVLMAAGDTFRA 198 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH--HHH-TTCCEEEECCCCSCH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh--ccc-cCCEEEEeccccccc
Confidence 4579999999999999999998872 222 134455544444554
No 372
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.65 E-value=0.058 Score=51.35 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999987
No 373
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.63 E-value=0.06 Score=54.67 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 374
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.62 E-value=0.05 Score=51.63 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 375
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.60 E-value=0.056 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347999999999999999998873
No 376
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.59 E-value=0.34 Score=51.04 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...||.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999877764
No 377
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.55 E-value=0.11 Score=55.26 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=30.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDA 168 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 168 (654)
...+|+|+|..|+|||||++.+.. ..+. -.+.+++.-.+.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg--ll~~-~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR--QFEQ-QGKSVMLAAGDTFRA 334 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH--HHHH-TTCCEEEECCCTTCH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH--Hhhh-cCCeEEEecCcccch
Confidence 467999999999999999999887 2221 235566654455553
No 378
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.54 E-value=0.041 Score=52.78 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=16.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHH-c
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAY-N 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~-~ 146 (654)
-.+|+|+|..|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 379
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.52 E-value=0.062 Score=51.95 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
. .+++|+|..|.|||||.+.+..
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHT
T ss_pred C-EEEEEECCCCCCHHHHHHHHhC
Confidence 5 7999999999999999999987
No 380
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.50 E-value=0.096 Score=59.87 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=37.5
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG-------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.+..++.+...+... ......+-++|..|+|||++|+++.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998888642 12234789999999999999999988
No 381
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.46 E-value=0.08 Score=55.58 Aligned_cols=92 Identities=12% Similarity=0.201 Sum_probs=51.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHcccccc--------CCcc-eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccC
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVK--------HYFD-CRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKES 192 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~ 192 (654)
.-++|.|-.|+|||||+..+.+..... ++=+ .++++-+.+.. .+.++.+++...=.....- ....+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999999854431 1111 45566676654 4455666544420000000 0111111
Q ss_pred h------HHHHHHHHHHHc---CCceEEEeccc
Q 048216 193 S------EMKKIILHEYVM---TKRYLIVLDNF 216 (654)
Q Consensus 193 ~------~~~~~~l~~~L~---~kr~LiVLDDv 216 (654)
. ....-.+.++++ ++.+||++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1 002233455553 78999999999
No 382
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.44 E-value=0.19 Score=46.89 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=30.3
Q ss_pred EEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIK 177 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 177 (654)
.|+|=|..|+||||.++.+++ .....-..+++..-.......+..++++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 478889999999999999987 44333223333332222333444555443
No 383
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.40 E-value=0.064 Score=49.00 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999887
No 384
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.40 E-value=0.077 Score=58.92 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=36.7
Q ss_pred CCceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|.+..++.+...+..+ ..+.|+|..|+||||||+.+.+
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 46899998888888877765 4789999999999999999998
No 385
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.38 E-value=0.17 Score=53.81 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=50.8
Q ss_pred EEEEEEcCCCchHHHHH-HHHHccccccCCcce-eEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccChH-----
Q 048216 125 SVVAVLDSIGLDKTAFA-AEAYNSNYVKHYFDC-RAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESSE----- 194 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~----- 194 (654)
.-++|.|-.|+|||+|| ..+.|.. .-+. ++++-+.+.. .+.++.+++...=...... ....+....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 56899999999999995 6888842 2453 4667777765 4456666665422111110 111111110
Q ss_pred -HHHHHHHHHH--cCCceEEEeccc
Q 048216 195 -MKKIILHEYV--MTKRYLIVLDNF 216 (654)
Q Consensus 195 -~~~~~l~~~L--~~kr~LiVLDDv 216 (654)
...-.+.+++ ++|.+||++||+
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 0111233333 589999999999
No 386
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.25 E-value=0.11 Score=48.46 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 109 RIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 109 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-+..+..++..- +.-+.+.|+|.+|.||||+|.++.+
T Consensus 44 f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 44 FLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHH
Confidence 355555655432 2345699999999999999998888
No 387
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.25 E-value=0.062 Score=51.38 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999987
No 388
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.25 E-value=0.099 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999987
No 389
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.23 E-value=0.069 Score=50.50 Aligned_cols=21 Identities=14% Similarity=-0.020 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 390
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.21 E-value=0.069 Score=50.96 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.20 E-value=0.07 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+|.|+.|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 392
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.20 E-value=0.068 Score=51.50 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 393
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.18 E-value=0.12 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....+|+|+|..|.|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999997
No 394
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.18 E-value=0.059 Score=50.83 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+++|+|..|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 395
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.12 E-value=0.14 Score=54.38 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=50.7
Q ss_pred EEEEEEcCCCchHHHHH-HHHHccccccCCcce-eEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 125 SVVAVLDSIGLDKTAFA-AEAYNSNYVKHYFDC-RAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-++|.|-.|+|||||| ..+.|.. .-+. ++++-+.+.. .+.++.+++...=...... ....+...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 56899999999999995 6888832 2453 4667777765 4556666665421110000 01111111
Q ss_pred HHHHHHHHHHH--cCCceEEEecccc
Q 048216 194 EMKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 194 ~~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
....-.+.+++ ++|.+||++||+-
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 00112233333 5899999999993
No 396
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.07 E-value=0.077 Score=50.94 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 397
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.02 E-value=0.089 Score=51.32 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 568899999999999999988874
No 398
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.95 E-value=0.12 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..+|+++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988876
No 399
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.92 E-value=0.073 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 400
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.91 E-value=0.083 Score=50.83 Aligned_cols=25 Identities=12% Similarity=-0.001 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....+|+|.|+.|.||||+|+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999887
No 401
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.88 E-value=0.088 Score=52.89 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.9
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4678999999999999999876654
No 402
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.81 E-value=0.052 Score=54.20 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=18.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 403
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.81 E-value=0.084 Score=51.40 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999998
No 404
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.80 E-value=0.075 Score=52.14 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||.+.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999987
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.78 E-value=0.15 Score=48.82 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
...+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999883
No 406
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.77 E-value=0.071 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999987
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.73 E-value=0.079 Score=51.24 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999987
No 408
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.71 E-value=0.088 Score=52.67 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 409
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.70 E-value=0.089 Score=53.02 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|.|+|+.|+||||||+.+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 410
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.65 E-value=0.086 Score=51.07 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||.+.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999986
No 411
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.64 E-value=0.21 Score=49.80 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=35.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcc-eeEEEEeCCCCCHHHHHHHHHHHhC
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFD-CRAWVQESLPYDADQLLYDIIKLVM 180 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 180 (654)
.-.+++|+|..|+|||||++.+...... .-. .++|+... ....++.+.+.....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e--~~~~~~~~r~~~~~~ 88 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE--ESVEETAEDLIGLHN 88 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc--CCHHHHHHHHHHHHc
Confidence 3469999999999999999988763221 112 34555433 345566666655543
No 412
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.60 E-value=0.091 Score=48.59 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..-.|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3568899999999999999998874
No 413
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.59 E-value=0.081 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999987
No 414
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.59 E-value=0.082 Score=51.69 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 415
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.59 E-value=0.09 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||++.+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999998
No 416
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.58 E-value=0.11 Score=52.63 Aligned_cols=24 Identities=8% Similarity=0.259 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.|+|+.|+||||||..+.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999987
No 417
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.58 E-value=0.082 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||.+.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 347999999999999999999987
No 418
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.57 E-value=0.083 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 419
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.57 E-value=0.11 Score=45.98 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHcc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998874
No 420
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.56 E-value=0.07 Score=50.56 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999987
No 421
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.51 E-value=0.14 Score=44.16 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=40.0
Q ss_pred eEEecCCCCCCCCCC--cCChhHHhcCCCceEEcCCCccccccChh-hhccccccceeccc
Q 048216 430 RVLNLGSLLNIPSLK--SLPSSLLSSLLNLYTLDMPFSYIDHTADE-FWKVSKLRYLNFGA 487 (654)
Q Consensus 430 r~L~L~~~~~lp~i~--~lP~~if~~L~~L~~L~L~~~~l~~lP~~-i~~L~~L~~L~l~~ 487 (654)
.+++-+++ .++ .+|..+ -.+|++|+|++|.|..+|.+ +..+.+|++|+|++
T Consensus 11 ~~v~Cs~~----~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 11 TLVDCGRR----GLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TEEECCSS----CCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CEEEeCCC----CCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 36788888 787 899655 45799999999999999875 46677788877644
No 422
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.48 E-value=0.15 Score=53.70 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887764
No 423
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.44 E-value=0.087 Score=51.15 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999987
No 424
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.40 E-value=0.11 Score=50.21 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|.|.|..|+||||+|+.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 425
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.40 E-value=0.11 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|+|+|.+|+||||++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988876
No 426
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.39 E-value=0.089 Score=51.39 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||.+.+..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999987
No 427
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.36 E-value=0.11 Score=46.49 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHcc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 428
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.27 E-value=0.093 Score=51.40 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=25.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEE
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWV 160 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 160 (654)
-.+++|+|..|.|||||.+.+.. -.. . .+.+++
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G--l~~-~-~G~I~i 78 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR--FYD-A-EGDIKI 78 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT--SSC-C-EEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhc--cCC-C-CeEEEE
Confidence 46899999999999999999987 232 2 455554
No 429
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.24 E-value=0.23 Score=50.88 Aligned_cols=49 Identities=12% Similarity=0.223 Sum_probs=33.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCc---c-eeEEEEeCCCCCHHHH
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF---D-CRAWVQESLPYDADQL 171 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~-~~~wv~vs~~~~~~~~ 171 (654)
.-.++.|+|..|+|||||+..+.......... . .++|++-...+...++
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i 182 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI 182 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH
Confidence 45899999999999999999988632111111 2 3488887666654443
No 430
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.24 E-value=0.21 Score=57.10 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=37.0
Q ss_pred CCceechhhHHHHHHHHhcC-------CCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 101 RDTVGLDNRIEELLDLLIEG-------PPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 101 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.++.++.+...+... +.....+-++|..|+|||++|+++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 45889999998888877532 12335789999999999999999998
No 431
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.24 E-value=0.12 Score=54.64 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|+|+|.+|+||||+|..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988776
No 432
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.23 E-value=0.093 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||++.+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999987
No 433
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.21 E-value=0.13 Score=47.23 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.....|+|+|.+|+|||||...+.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568899999999999999998874
No 434
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.17 E-value=0.096 Score=50.90 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999987
No 435
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.15 E-value=0.093 Score=48.09 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 436
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.15 E-value=0.11 Score=50.85 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6889999999999999977665
No 437
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.13 E-value=0.097 Score=51.45 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999987
No 438
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.12 E-value=0.11 Score=51.86 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999987
No 439
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.12 E-value=0.12 Score=51.44 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 47899999999999999877664
No 440
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.08 E-value=0.27 Score=49.88 Aligned_cols=53 Identities=19% Similarity=0.106 Sum_probs=35.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHh
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLV 179 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 179 (654)
.-.++.|.|.+|+||||+|..+..+..... ..++|++ -.-+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fS--lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFS--LEMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEE--SSSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEe--CCCCHHHHHHHHHHHh
Confidence 346889999999999999988876432211 2445554 4456667776665543
No 441
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.05 E-value=0.12 Score=54.20 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 442
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.05 E-value=0.1 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999987
No 443
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.01 E-value=0.1 Score=51.72 Aligned_cols=23 Identities=13% Similarity=-0.074 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999987
No 444
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.00 E-value=0.22 Score=50.90 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=25.2
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 113 LLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 113 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+.+-+........+|+|+|.+|+|||||+..+..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3333333334678999999999999999988864
No 445
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.99 E-value=0.11 Score=48.41 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 446
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.99 E-value=0.13 Score=45.44 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-|.++|.+|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 447
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.92 E-value=0.12 Score=50.57 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 347999999999999999999876
No 448
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.91 E-value=0.15 Score=46.55 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
....-|+|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 35577899999999999999998874
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.83 E-value=0.11 Score=54.73 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...+|.|+|+.|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 450
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.81 E-value=0.21 Score=53.17 Aligned_cols=85 Identities=12% Similarity=0.027 Sum_probs=49.6
Q ss_pred cEEEEEEcCCCchHHHHH-HHHHccccccCCcce-eEEEEeCCCCC-HHHHHHHHHHHhCCCCC----------cccc--
Q 048216 124 LSVVAVLDSIGLDKTAFA-AEAYNSNYVKHYFDC-RAWVQESLPYD-ADQLLYDIIKLVMPSRR----------LSEI-- 188 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~~~----------~~~~-- 188 (654)
-.-++|.|-.|+|||+|| ..+.|.. .-+. ++++-+.+... +.++.+++...=..... +...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 356789999999999995 6888843 2453 46677777643 44555554431100000 0000
Q ss_pred --cccChHHHHHHHHHHHcCCceEEEeccc
Q 048216 189 --MKESSEMKKIILHEYVMTKRYLIVLDNF 216 (654)
Q Consensus 189 --~~~~~~~~~~~l~~~L~~kr~LiVLDDv 216 (654)
..--. +++.++. ++|.+||++||+
T Consensus 239 a~~~a~t--iAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAA--LAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHH--HHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHH--HHHHHHH--cCCcEEEEEecH
Confidence 00111 3344554 589999999998
No 451
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.77 E-value=0.21 Score=53.74 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 122 PQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 122 ~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...++|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999988774
No 452
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.74 E-value=0.12 Score=51.66 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457999999999999999999886
No 453
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.73 E-value=0.13 Score=48.47 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+|.|.|.+|+||||.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999987
No 454
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.68 E-value=0.15 Score=46.80 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHccc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
--|.|+|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998753
No 455
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.64 E-value=0.13 Score=45.84 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998874
No 456
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.62 E-value=0.41 Score=49.87 Aligned_cols=58 Identities=7% Similarity=-0.014 Sum_probs=38.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKH----YFDCRAWVQESLPYDADQLLYDIIKLVMP 181 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 181 (654)
.-.++.|+|..|+|||||+..+.-...... .-..++|+.....++..++.. +++.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~-~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS-IAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH-HHHHcCC
Confidence 447999999999999999996642111111 224578888777777665433 5555543
No 457
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.62 E-value=0.11 Score=52.18 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 447899999999999999999976
No 458
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.59 E-value=0.45 Score=47.93 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=36.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCHHHHHHHHHHHh
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDADQLLYDIIKLV 179 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 179 (654)
.-.++.|.|.+|+||||||..+..+..... ..++|++.. -+..++...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 447899999999999999988775322222 466676543 56677777776654
No 459
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.56 E-value=0.21 Score=52.65 Aligned_cols=92 Identities=13% Similarity=0.179 Sum_probs=53.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHccccccCCc--ceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc--ccccccCh------
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSNYVKHYF--DCRAWVQESLPY-DADQLLYDIIKLVMPSRRL--SEIMKESS------ 193 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~------ 193 (654)
.-++|.|-.|+|||+|+..+.++..+.+.= +.++++-+.+.. .+.++.+++...=.....- ....+...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 557889999999999999999865432211 356666676654 4556666665431111100 01111111
Q ss_pred HHHHHHHHHHH---cCCceEEEeccc
Q 048216 194 EMKKIILHEYV---MTKRYLIVLDNF 216 (654)
Q Consensus 194 ~~~~~~l~~~L---~~kr~LiVLDDv 216 (654)
....-.+.+++ +++.+||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 00222344444 379999999998
No 460
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.55 E-value=0.32 Score=45.88 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
...|.|-|+.|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 461
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.51 E-value=0.15 Score=46.57 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
...|+|+|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 462
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.50 E-value=0.2 Score=45.15 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998774
No 463
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.43 E-value=0.12 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.++.|+|.+|+||||||..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999999988875
No 464
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.39 E-value=0.14 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
..++|.|+|+.|+||||||..+.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999987
No 465
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.37 E-value=0.46 Score=50.96 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=35.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHccccccCCcceeEEEEeCCCCCH-HHHHHHH
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNSNYVKHYFDCRAWVQESLPYDA-DQLLYDI 175 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i 175 (654)
-.-++|.|..|+|||+|++.+.+.. +-+.++++-+.+..+. .++.+++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4678999999999999999998732 2357778888877654 4555554
No 466
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.35 E-value=0.14 Score=50.52 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 467
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.35 E-value=0.17 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHccc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
.-|+|+|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988653
No 468
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.31 E-value=0.14 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.--|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356889999999999999998764
No 469
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.28 E-value=0.24 Score=52.73 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=55.5
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchHHHHH-HHHHccccc----cCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCc
Q 048216 113 LLDLLIEGPPQLSVVAVLDSIGLDKTAFA-AEAYNSNYV----KHYFD-CRAWVQESLPY-DADQLLYDIIKLVMPSRRL 185 (654)
Q Consensus 113 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~ 185 (654)
.++.|..=. .-.-++|.|-.|+|||+|| ..+.|.... .++-+ .++++-+.+.. .+.++.+++...=......
T Consensus 152 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 444444321 2356899999999999995 677774321 12345 36677787765 4556666665421111000
Q ss_pred --ccccccChH------HHHHHHHHHH--cCCceEEEecccc
Q 048216 186 --SEIMKESSE------MKKIILHEYV--MTKRYLIVLDNFE 217 (654)
Q Consensus 186 --~~~~~~~~~------~~~~~l~~~L--~~kr~LiVLDDvw 217 (654)
....+.... ...-.+.+++ ++|.+||++||+-
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 011111110 0111233333 5899999999993
No 470
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.28 E-value=1.2 Score=47.99 Aligned_cols=53 Identities=13% Similarity=0.054 Sum_probs=35.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHccccccCCc-ceeEEEEeCCCCCHHHHHHHHHHHh
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNSNYVKHYF-DCRAWVQESLPYDADQLLYDIIKLV 179 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l 179 (654)
.-.++.|.|.+|+||||||..+..+ +.... ..++|++. .-+..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~--E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAML--EESVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEec--cCCHHHHHHHHHHHH
Confidence 3468899999999999999887763 22221 24566654 335667777665543
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.24 E-value=0.098 Score=51.24 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
....|.|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998877
No 472
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.23 E-value=0.17 Score=44.90 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
-|+|+|.+|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998864
No 473
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.19 E-value=0.31 Score=47.54 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccc
Q 048216 110 IEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 110 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
+.++.+.+.........|+|+|..|+|||||...+....
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444454444456778999999999999999998753
No 474
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.12 E-value=0.14 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 475
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.07 E-value=0.34 Score=47.49 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHccc
Q 048216 110 IEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 110 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
+.++.+.+...+.....|.++|.+|+|||||...+.+..
T Consensus 25 l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444444444445678899999999999999998753
No 476
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.99 E-value=0.15 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.+.+++|+|+-|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999863
No 477
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.95 E-value=0.2 Score=44.71 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999998864
No 478
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.95 E-value=0.37 Score=49.71 Aligned_cols=60 Identities=25% Similarity=0.247 Sum_probs=32.6
Q ss_pred hhhcccceeeEEecCCCCCCCCCCcCChhHHhcCCCceEEcCCCccccccCh-hhhccccccceec
Q 048216 421 KICKMFKFLRVLNLGSLLNIPSLKSLPSSLLSSLLNLYTLDMPFSYIDHTAD-EFWKVSKLRYLNF 485 (654)
Q Consensus 421 ~~~~~l~~Lr~L~L~~~~~lp~i~~lP~~if~~L~~L~~L~L~~~~l~~lP~-~i~~L~~L~~L~l 485 (654)
..|.++..|+.+.+.. .+..++...|.++.+|+.+.+.++.++.++. .+.++.+|+.+.+
T Consensus 257 ~aF~~~~~l~~i~l~~-----~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 257 FLLQNCTALKTLNFYA-----KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTTTTCTTCCEEEECC-----CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cccceeehhccccccc-----cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 4455555555555543 3455555555666666666665555555543 3455555555554
No 479
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.93 E-value=0.16 Score=46.31 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+.+|+|..|.|||||+.+++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999864
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.92 E-value=0.16 Score=46.03 Aligned_cols=23 Identities=9% Similarity=0.032 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHcc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 481
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.92 E-value=0.27 Score=50.10 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 113 LLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 113 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
+++-+.-.-....+++|+|..|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3443433223568999999999999999999874
No 482
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.91 E-value=0.18 Score=54.25 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=30.7
Q ss_pred ceechhhHHHHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 103 TVGLDNRIEELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 103 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+.|.+-.+.+.+..........+|.+.|+.|.||||+|+++.+
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence 44455554455554422223457899999999999999999998
No 483
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.79 E-value=0.3 Score=47.66 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchHHHHHHHHHc
Q 048216 112 ELLDLLIEGPPQLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 112 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.+..+|....+.-.-|.++|.+|.|||++|.++.+
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34555544423456799999999999999999988
No 484
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.79 E-value=0.16 Score=46.75 Aligned_cols=23 Identities=13% Similarity=-0.150 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHHc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 35688999999999999988776
No 485
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.76 E-value=0.16 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHcc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998874
No 486
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.75 E-value=0.17 Score=45.08 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHccc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
-|.|+|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887653
No 487
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.74 E-value=0.17 Score=45.15 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHccc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
--|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999988753
No 488
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.74 E-value=0.2 Score=45.76 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.--|.|+|.+|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998874
No 489
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.70 E-value=0.17 Score=45.23 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
--|+|+|.+|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999998864
No 490
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.64 E-value=0.15 Score=50.66 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+++|+|..|.|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346999999999999999999987
No 491
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.61 E-value=0.21 Score=44.29 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHcc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
--|+|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999888764
No 492
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.61 E-value=0.2 Score=45.15 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
...-|+|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998875
No 493
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.59 E-value=0.21 Score=45.41 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998864
No 494
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.57 E-value=0.21 Score=45.31 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
..-|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999998864
No 495
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.57 E-value=0.2 Score=45.55 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHccc
Q 048216 125 SVVAVLDSIGLDKTAFAAEAYNSN 148 (654)
Q Consensus 125 ~vi~I~G~gGiGKTtLA~~v~~~~ 148 (654)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998754
No 496
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.46 E-value=0.21 Score=54.32 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~ 146 (654)
.-.+|+|+|+.|.|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 347999999999999999999987
No 497
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.38 E-value=0.19 Score=45.47 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
...-|.|+|.+|+|||||...+.++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999988764
No 498
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.34 E-value=0.18 Score=46.11 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHHcc
Q 048216 124 LSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 124 ~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999877664
No 499
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.33 E-value=0.17 Score=44.96 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 048216 126 VVAVLDSIGLDKTAFAAEAYN 146 (654)
Q Consensus 126 vi~I~G~gGiGKTtLA~~v~~ 146 (654)
-|+|+|.+|+|||||.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998865
No 500
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.29 E-value=0.21 Score=45.90 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHHcc
Q 048216 123 QLSVVAVLDSIGLDKTAFAAEAYNS 147 (654)
Q Consensus 123 ~~~vi~I~G~gGiGKTtLA~~v~~~ 147 (654)
....|+|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999874
Done!