BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048221
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S2O|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 At 1.40 A Resolution
pdb|1TJ3|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In A Closed Conformation
pdb|1TJ4|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose
pdb|1TJ5|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose And
Phosphate
pdb|1U2S|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Glucose
pdb|1U2T|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose6p
pdb|2B1Q|A Chain A, X-ray Structure Of The Sucrose-phosphatase (spp) From
Synechocystis Sp.pcc6803 In Complex With Trehalose
pdb|2B1R|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Cellobiose
pdb|2D2V|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Maltose
Length = 244
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 6/140 (4%)
Query: 14 QSETEQRPHKISFFVEKFKAFAIMKALSERLEERGLDVKLIFSSGMALDVLPKGAGKGQA 73
QS EQ P KIS+ ++ ++ L+E L+E G+ V++IFSSG +D+LP+ + KG A
Sbjct: 107 QSPLEQNPWKISYHLDPQACPTVIDQLTEMLKETGIPVQVIFSSGKDVDLLPQRSNKGNA 166
Query: 74 LAYVLKKFKIDGKVPANTLVCGDSGNDAELFSVPDIYGVMVSNSQEELLQWHAENAKDNP 133
Y+ + ++ P+ TLVCGDSGND LF GV+V N+Q ELL W+ + +
Sbjct: 167 TQYLQQHLAME---PSQTLVCGDSGNDIGLFET-SARGVIVRNAQPELLHWYDQWG--DS 220
Query: 134 KIIHATERCAARIMQAIGKF 153
+ A A I++AI F
Sbjct: 221 RHYRAQSSHAGAILEAIAHF 240
>pdb|1XVI|A Chain A, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
pdb|1XVI|B Chain B, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
Length = 275
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 37 MKALSERLEERGLDVKLIFSSGMAL-DVLPKGAGKGQALAYVLKKFK-IDGKVPANTLVC 94
M + RL E GL F G VL AGK QA +++ ++ + GK P TL
Sbjct: 160 MAQFTARLNELGLQ----FMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRP-TTLGL 214
Query: 95 GDSGNDAELFSVPDIYGVMVSNSQEELLQWHAENAKDNPKIIHATER 141
GD NDA L V D Y V+V E + H E +P + T+R
Sbjct: 215 GDGPNDAPLLEVMD-YAVIVKGLNREGVHLHDE----DPARVWRTQR 256
>pdb|1RLO|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|C Chain C, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|D Chain D, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
Length = 271
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 56 SSGMA-LDVLPKGAGKGQALAYVLKKFKIDGKVPANTLVCGDSGNDAELFSVPDIYGVMV 114
+SG +D++ G K ++ +LK++ + P N + GDSGNDAE+ + Y +
Sbjct: 177 TSGFGFIDLIIPGLHKANGISRLLKRWDLS---PQNVVAIGDSGNDAEMLKMAR-YSFAM 232
Query: 115 SNSQEELLQWHAENAKDNPKIIHATERCAARIMQAI 150
N+ E + Q DN A ++QA+
Sbjct: 233 GNAAENIKQIARYATDDN------NHEGALNVIQAV 262
>pdb|1RLM|A Chain A, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|B Chain B, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|C Chain C, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|D Chain D, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLT|A Chain A, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|B Chain B, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|C Chain C, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|D Chain D, Transition State Analogue Of Ybiv From E. Coli K12
Length = 271
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 56 SSGMA-LDVLPKGAGKGQALAYVLKKFKIDGKVPANTLVCGDSGNDAELFSVPDIYGVMV 114
+SG +D++ G K ++ +LK++ + P N + GDSGNDAE+ + Y +
Sbjct: 177 TSGFGFIDLIIPGLHKANGISRLLKRWDLS---PQNVVAIGDSGNDAEMLKMAR-YSFAM 232
Query: 115 SNSQEELLQWHAENAKDNPKIIHATERCAARIMQAI 150
N+ E + Q DN A ++QA+
Sbjct: 233 GNAAENIKQIARYATDDN------NHEGALNVIQAV 262
>pdb|3PGV|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|B Chain B, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|C Chain C, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|D Chain D, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
Length = 285
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 48 GLDVKLIFSSGMALDVLPKGAGKGQALAYVLKKFKIDGKVPANTLVCGDSGNDAELFSVP 107
G V + FS+ L+V G KG AL V K G ++ + GD NDAE S
Sbjct: 188 GDRVNVSFSTLTCLEVXAGGVSKGHALEAVAKXL---GYTLSDCIAFGDGXNDAEXLSXA 244
Query: 108 DIYGVMVSNSQEELLQWHAE 127
G + +N+ + L H E
Sbjct: 245 G-KGCIXANAHQRLKDLHPE 263
>pdb|3L7Y|A Chain A, The Crystal Structure Of Smu.1108c From Streptococcus
Mutans Ua159
Length = 304
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 18 EQRPHKISFFVEKFKAFAIMKALSERLEERGLDVKLIFSSGMA-LDVLPKGAGKGQALAY 76
++R K++ V++ ++ IMKA+++ + L + +SG +D++ KG KG AL
Sbjct: 179 DERFFKLTLQVKEEESAQIMKAIADYKTSQRL---VGTASGFGYIDIITKGLHKGWALQQ 235
Query: 77 VLKKFKIDGKVPANTLVCGDSGNDAELFSVPDIYGVMVSNSQEELLQWHAENAKDN 132
+LK++ + + GD GND E+ + Y ++N+ + + AK N
Sbjct: 236 LLKRWNF---TSDHLMAFGDGGNDIEMLKLAK-YSYAMANAPKNVKAAANYQAKSN 287
>pdb|2HF2|A Chain A, Domain Shifting Confirms Monomeric Structure Of
Escherichia Sugar Phosphatase Suph
pdb|2HF2|B Chain B, Domain Shifting Confirms Monomeric Structure Of
Escherichia Sugar Phosphatase Suph
Length = 283
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 56 SSGMA-LDVLPKGAGKGQALAYVLKKFKIDGKVPANTLVCGDSGNDAELFSVPDIYGVMV 114
+SG +D++ G K ++ +LK++ + P N + GDSGNDAE Y
Sbjct: 179 TSGFGFIDLIIPGLHKANGISRLLKRWDLS---PQNVVAIGDSGNDAEXLKXAR-YSFAX 234
Query: 115 SNSQEELLQWHAENAKDNPKIIHATERCAARIMQAI 150
N+ E + Q DN A ++QA+
Sbjct: 235 GNAAENIKQIARYATDDN------NHEGALNVIQAV 264
>pdb|2PQ0|A Chain A, Crystal Structure Of Hyopthetical Protein (Gk_1056) From
Geobacillus Kaustophilus Hta426
pdb|2PQ0|B Chain B, Crystal Structure Of Hyopthetical Protein (Gk_1056) From
Geobacillus Kaustophilus Hta426
pdb|2QYH|A Chain A, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|B Chain B, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|C Chain C, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|D Chain D, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
Length = 258
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 59 MALDVLPKGAGKGQALAYVLKKFKIDGKVPANTLVCGDSGNDAELFSVPDIYGVMVSNSQ 118
++ DVLP G K + + ++K ID K + GD ND E S GV N+
Sbjct: 173 VSTDVLPAGGSKAEGIRXXIEKLGIDKK---DVYAFGDGLNDIEXLSFVGT-GVAXGNAH 228
Query: 119 EEL 121
EE+
Sbjct: 229 EEV 231
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 37 MKALSERLEERGLDVKLIFSS-GMALDVLPKGAGKGQALAYVLKKFKIDGKVPANTLVCG 95
+ L E L ER DV +F S L+++PK KG+AL ++ ++ + +V G
Sbjct: 157 LDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKE---EIVVFG 213
Query: 96 DSGNDAELF 104
D+ ND +F
Sbjct: 214 DNENDLFMF 222
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 25 SFFVEKFKAFAIMKALSERLEERGLDVKLIFSSGMALDVLPKGAGKGQALAYVLKKFKID 84
SFF EK +A + E D+ L+ S+ ++ + A KGQAL + K+ I
Sbjct: 179 SFFKEKLEA-------GWKRYEHAEDLTLVSSAEHNFELSSRKASKGQALKRLAKQLNI- 230
Query: 85 GKVP-ANTLVCGDSGNDAELFSVPDIYGVMVSNSQEEL 121
P T GDS ND GV N++E++
Sbjct: 231 ---PLEETAAVGDSLNDKSXLEAAG-KGVAXGNAREDI 264
>pdb|3DAO|A Chain A, Crystal Structure Of A Putative Phosphatse (Eubrec_1417)
From Eubacterium Rectale At 1.80 A Resolution
pdb|3DAO|B Chain B, Crystal Structure Of A Putative Phosphatse (Eubrec_1417)
From Eubacterium Rectale At 1.80 A Resolution
Length = 283
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 61 LDVLPKGAGKGQALAYVLKKFKIDGKVPANTLVCGDSGNDAELFSVPDIYGVMVSNSQEE 120
+D KG K AL+Y++ +F + +P GD+ ND E I VSN+++E
Sbjct: 203 VDCNAKGVSKWTALSYLIDRFDL---LPDEVCCFGDNLNDIEXLQNAGI-SYAVSNARQE 258
Query: 121 LL 122
++
Sbjct: 259 VI 260
>pdb|1L6R|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc0014)
pdb|1L6R|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc0014)
Length = 227
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 45 EERGLDVKLIFSSGMALDVLPKGAGKGQALAYVLKKFKIDGKVPANTLVCGDSGNDAELF 104
E RG +IF SG + ++ +G K A+ + + + ++ LV GDS ND +F
Sbjct: 132 ESRGF---VIFYSGYSWHLMNRGEDKAFAVNKLKEMYSLEYD---EILVIGDSNNDMPMF 185
Query: 105 SVP 107
+P
Sbjct: 186 QLP 188
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 40 LSERLEERGLDVKLIFSSGMALDVLPKGAGKGQALAYVLKKFKID 84
L+ERLE++G+DV F G V + K + +LKKF +D
Sbjct: 285 LAERLEKKGVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVD 329
>pdb|3M1Y|A Chain A, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|B Chain B, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|C Chain C, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|D Chain D, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
Length = 217
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 69 GKGQALAYVLKKFKIDGKVPANTLVCGDSGNDAELFSVPDIYGVMVSNSQEELLQWHAEN 128
KG+ L + + I NTLV GD ND F I ++ + +E+L+ HA +
Sbjct: 142 SKGEXLLVLQRLLNIS---KTNTLVVGDGANDLSXFKHAHI---KIAFNAKEVLKQHATH 195
Query: 129 AKDNPKI 135
+ P +
Sbjct: 196 CINEPDL 202
>pdb|1KYT|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc014)
pdb|1KYT|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc014)
Length = 227
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 45 EERGLDVKLIFSSGMALDVLPKGAGKGQALAYVLKKFKIDGKVPANTLVCGDSGNDAELF 104
E RG +IF SG + + +G K A+ + + + ++ LV GDS ND F
Sbjct: 132 ESRGF---VIFYSGYSWHLXNRGEDKAFAVNKLKEXYSLEYD---EILVIGDSNNDXPXF 185
Query: 105 SVP 107
+P
Sbjct: 186 QLP 188
>pdb|3ISM|C Chain C, Crystal Structure Of The EndogENDOGI COMPLEX: MECHANISM
OF ENDOG Inhibition
Length = 359
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 3 WILLFDSYGTLQSETEQRPHKISFFVEKFKAFA 35
W LLFD GT QS TE K S +E+++ A
Sbjct: 71 WRLLFDEAGTSQSNTE----KASQLLEEYRGDA 99
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition
State Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 40 LSERLEERGLDVKLIFSSGMALDVLPKGAGKGQALAYVLKKFKIDGKVPAN 90
+ E L++RG V + SG D P G G+ Q LAYV G N
Sbjct: 33 IQEDLQQRGATVYVANLSGFQSDDGPNGRGE-QLLAYVKTVLAATGATKVN 82
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With
Hexylphosphonic Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With
Hexylphosphonic Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 40 LSERLEERGLDVKLIFSSGMALDVLPKGAGKGQALAYVLKKFKIDGKVPAN 90
+ E L++RG V + SG D P G G+ Q LAYV G N
Sbjct: 33 IQEDLQQRGATVYVANLSGFQSDDGPNGRGE-QLLAYVKTVLAATGATKVN 82
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 62 DVLPKGAGKGQALAYVLKKFKIDGKVPANTLVCGDSGNDAELFSVPDIYGVMVSNSQEEL 121
DV G K L+ +++ KV + + CGD GND + I GV + N+ E++
Sbjct: 187 DVNVAGTSKATGLSLFADYYRV--KV-SEIMACGDGGNDIPMLKAAGI-GVAMGNASEKV 242
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 11 GTLQSETEQRPHKISFFV-------EKFKAFAIMKALSERL-----EERGLDVKLIFSSG 58
G ++S +E + HK++ F + K ++ E L EE+ +D + +
Sbjct: 234 GHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIAD 293
Query: 59 MALDVLPKGAGKGQALAYVLKKFKI 83
M ++ + GAG G+ + L ++ I
Sbjct: 294 MGVECIVAGAGVGELALHYLNRYGI 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,239,286
Number of Sequences: 62578
Number of extensions: 210186
Number of successful extensions: 553
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 23
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)