BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048223
         (286 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5R6G1|MTER3_PONAB mTERF domain-containing protein 3, mitochondrial OS=Pongo abelii
           GN=MTERFD3 PE=2 SV=1
          Length = 385

 Score = 35.0 bits (79), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 12/133 (9%)

Query: 2   PKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLL----SRSLDNHLIPTFNSLSH 57
           P +LL SP  +   LEF   +G ++ + +++LSK  G L     RS+ N +  + N+   
Sbjct: 217 PFILLNSPTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKC 276

Query: 58  LLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPK 117
             H  ++   L+++ P +L     YY +P ++      + E   I  I   P +    P+
Sbjct: 277 TDHDLKQ---LVLKCPALL-----YYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQ 328

Query: 118 FFEKNVASVKEMG 130
             +  +  +  +G
Sbjct: 329 IVQYRIRKLNSLG 341


>sp|Q5XIE2|MTER3_RAT mTERF domain-containing protein 3, mitochondrial OS=Rattus
           norvegicus GN=Mterfd3 PE=2 SV=1
          Length = 385

 Score = 34.3 bits (77), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 18/136 (13%)

Query: 2   PKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSR----SLDNHLI---PTFNS 54
           P ++L SP  +   L+F   +G ++ + +++LSK  G L +    S+ N +     TF  
Sbjct: 217 PFIVLSSPTAVGEVLKFLQGQGFTDSEVLQLLSKLKGFLFQLQPGSIQNSISFTKTTFEC 276

Query: 55  LSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLR 114
             H L        L+++ P +LY+ A   L   ++ L   G+     +  I + P +   
Sbjct: 277 TDHDLRQ------LVVKCPALLYYPAP-VLEERIQALLKEGIS----VAQIRASPMVLEL 325

Query: 115 HPKFFEKNVASVKEMG 130
            P+  +  +  +  +G
Sbjct: 326 TPQIIQYRIRKLNSLG 341


>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens
           GN=MTERFD3 PE=1 SV=2
          Length = 385

 Score = 34.3 bits (77), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 2   PKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLL----SRSLDNHLIPTFNSLSH 57
           P +LL SP  +   LEF   +G ++ + +++LSK  G L     RS+ N +  + N+   
Sbjct: 217 PFILLNSPTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKC 276

Query: 58  LLHSSEKTIALIIRFPYILYHDA 80
             H  ++   L+++ P +LY+  
Sbjct: 277 TDHDLKQ---LVLKCPALLYYSV 296


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,800,921
Number of Sequences: 539616
Number of extensions: 4273752
Number of successful extensions: 9375
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9375
Number of HSP's gapped (non-prelim): 5
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)