Query 048223
Match_columns 286
No_of_seqs 159 out of 1208
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 100.0 1.6E-48 5.6E-53 344.3 13.0 250 11-264 4-261 (270)
2 3mva_O Transcription terminati 100.0 2.3E-46 7.9E-51 341.0 14.6 251 1-261 40-341 (343)
3 4fp9_B Mterf domain-containing 100.0 3E-38 1E-42 284.3 16.6 208 11-263 45-264 (335)
4 3mva_O Transcription terminati 100.0 9.7E-33 3.3E-37 251.2 12.0 240 12-261 19-312 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 9E-33 3.1E-37 243.5 10.9 189 2-197 30-224 (270)
6 4fp9_B Mterf domain-containing 99.9 1.5E-22 5.1E-27 182.1 13.1 156 1-201 70-227 (335)
7 4fzv_B Mterf domain-containing 99.4 2.4E-12 8.3E-17 100.0 11.5 177 47-261 32-216 (239)
8 4fzv_B Mterf domain-containing 98.2 3E-06 1E-10 65.8 7.7 108 15-124 36-144 (239)
9 3ff5_A PEX14P, peroxisomal bio 91.3 0.34 1.1E-05 30.8 4.4 43 117-176 11-53 (54)
10 3ff5_A PEX14P, peroxisomal bio 87.5 0.61 2.1E-05 29.6 3.5 25 11-35 29-53 (54)
11 1oqy_A HHR23A, UV excision rep 86.4 0.65 2.2E-05 41.8 4.5 39 11-57 167-205 (368)
12 4ae4_A Ubiquitin-associated pr 85.9 4.7 0.00016 29.9 8.3 96 13-127 9-112 (118)
13 2w84_A Peroxisomal membrane pr 85.5 1 3.5E-05 30.1 3.9 45 116-177 15-59 (70)
14 4ae4_A Ubiquitin-associated pr 84.8 2 6.7E-05 32.0 5.7 99 85-200 9-116 (118)
15 2w84_A Peroxisomal membrane pr 81.8 1.4 4.8E-05 29.5 3.4 26 11-36 34-59 (70)
16 3idw_A Actin cytoskeleton-regu 74.5 2.5 8.4E-05 28.4 2.9 53 15-70 5-59 (72)
17 2xzm_O RPS13E; ribosome, trans 72.7 6.8 0.00023 30.2 5.4 34 2-35 25-58 (153)
18 3u5c_N S27A, YS15, 40S ribosom 71.6 6.7 0.00023 30.2 5.1 34 2-35 23-56 (151)
19 1ify_A HHR23A, UV excision rep 67.1 7.9 0.00027 23.7 3.9 40 151-197 6-45 (49)
20 2ooa_A E3 ubiquitin-protein li 67.1 4.4 0.00015 25.3 2.7 26 150-175 8-33 (52)
21 2knz_A Ubiquilin-4; cytoplasm, 66.6 9.7 0.00033 23.8 4.3 42 8-57 6-49 (53)
22 2cos_A Serine/threonine protei 64.9 6.6 0.00023 24.7 3.2 39 157-202 13-51 (54)
23 1z96_A DNA-damage, UBA-domain 62.2 8.6 0.00029 22.1 3.3 24 154-177 5-28 (40)
24 2g3q_A Protein YBL047C; endocy 61.4 5.2 0.00018 23.7 2.2 36 155-197 6-41 (43)
25 2knz_A Ubiquilin-4; cytoplasm, 60.3 11 0.00037 23.5 3.7 42 149-197 7-49 (53)
26 2oo9_A E3 ubiquitin-protein li 59.1 11 0.00038 22.8 3.3 24 152-175 3-26 (46)
27 2d9s_A CBL E3 ubiquitin protei 56.1 12 0.00041 23.5 3.2 22 154-175 10-31 (53)
28 3j20_Q 30S ribosomal protein S 54.2 15 0.00052 28.5 4.3 35 2-36 23-57 (158)
29 1uxc_A FRUR (1-57), fructose r 53.0 25 0.00085 22.8 4.7 48 159-207 6-53 (65)
30 1wji_A Tudor domain containing 52.2 12 0.00041 24.3 3.0 36 155-197 11-46 (63)
31 2juj_A E3 ubiquitin-protein li 50.9 18 0.00063 22.7 3.5 25 151-175 5-29 (56)
32 1vg5_A RSGI RUH-014, rhomboid 50.5 9.4 0.00032 25.7 2.3 38 153-197 29-66 (73)
33 1veg_A NEDD8 ultimate buster-1 49.4 15 0.0005 25.4 3.2 41 154-201 30-70 (83)
34 2ekk_A UBA domain from E3 ubiq 48.2 13 0.00044 22.4 2.5 36 154-197 10-45 (47)
35 2dak_A Ubiquitin carboxyl-term 47.6 17 0.00059 23.4 3.2 39 154-199 10-48 (63)
36 1wiv_A UBP14, ubiquitin-specif 47.2 17 0.00059 24.3 3.2 37 155-198 31-67 (73)
37 2cpw_A CBL-interacting protein 45.8 25 0.00086 22.8 3.8 37 156-198 22-58 (64)
38 2jy5_A Ubiquilin-1; UBA, alter 44.1 23 0.00078 21.9 3.2 26 9-34 8-35 (52)
39 2l8n_A Transcriptional repress 43.9 26 0.00088 22.8 3.7 41 92-135 17-57 (67)
40 1dv0_A DNA repair protein HHR2 43.2 9.3 0.00032 23.2 1.2 22 155-176 6-27 (47)
41 1uxc_A FRUR (1-57), fructose r 42.5 18 0.00062 23.4 2.7 44 92-135 8-51 (65)
42 2xzm_O RPS13E; ribosome, trans 42.4 13 0.00046 28.6 2.3 35 37-72 25-59 (153)
43 2bwb_A Ubiquitin-like protein 41.9 29 0.00099 20.9 3.4 25 150-174 4-29 (46)
44 1g6u_A Domain swapped dimer; d 39.2 52 0.0018 19.1 3.9 22 152-173 4-25 (48)
45 2l8n_A Transcriptional repress 38.1 65 0.0022 20.8 5.0 45 159-207 15-59 (67)
46 1wr1_B Ubiquitin-like protein 37.3 33 0.0011 21.8 3.3 41 150-197 14-55 (58)
47 3dfg_A Xcrecx, regulatory prot 36.9 1.4E+02 0.0048 22.8 12.7 137 14-178 22-160 (162)
48 2ef8_A C.ECOT38IS, putative tr 36.1 87 0.003 20.2 6.3 43 162-207 32-74 (84)
49 1ixs_A Holliday junction DNA h 35.5 44 0.0015 21.4 3.7 26 152-177 16-41 (62)
50 3u5c_N S27A, YS15, 40S ribosom 34.7 14 0.00047 28.5 1.3 35 37-72 23-57 (151)
51 3ugm_A TAL effector avrbs3/PTH 34.2 1.3E+02 0.0045 29.5 8.0 43 162-207 421-464 (1047)
52 3ayh_A DNA-directed RNA polyme 33.3 23 0.0008 26.7 2.4 44 66-110 60-103 (136)
53 2dag_A Ubiquitin carboxyl-term 32.8 37 0.0013 22.7 3.1 40 155-200 11-50 (74)
54 1wj7_A Hypothetical protein (R 31.3 56 0.0019 23.5 3.9 42 149-197 35-77 (104)
55 1q08_A Zn(II)-responsive regul 31.1 37 0.0013 23.5 3.1 21 155-175 7-27 (99)
56 2dai_A Ubadc1, ubiquitin assoc 30.9 43 0.0015 22.9 3.2 39 155-200 31-69 (83)
57 2jt1_A PEFI protein; solution 30.7 83 0.0028 21.0 4.6 45 117-165 4-53 (77)
58 1wgn_A UBAP1, ubiquitin associ 30.1 35 0.0012 22.1 2.4 39 154-199 20-58 (63)
59 2dkl_A Trinucleotide repeat co 30.1 65 0.0022 22.1 4.1 38 154-198 22-59 (85)
60 2cp8_A NEXT to BRCA1 gene 1 pr 28.4 1.1E+02 0.0038 19.1 4.6 18 116-133 6-23 (54)
61 2dah_A Ubiquilin-3; UBA domain 28.1 40 0.0014 21.0 2.4 17 11-27 8-24 (54)
62 2ve7_C Kinetochore protein NUF 26.3 1.4E+02 0.0049 24.8 6.3 70 185-258 47-125 (250)
63 2vz4_A Tipal, HTH-type transcr 25.8 1E+02 0.0035 21.7 4.7 22 155-176 49-70 (108)
64 1vek_A UBP14, ubiquitin-specif 25.8 60 0.002 22.2 3.2 40 155-200 31-70 (84)
65 1vej_A Riken cDNA 4931431F19; 25.3 33 0.0011 23.0 1.8 14 153-166 29-42 (74)
66 1b0n_B Protein (SINI protein); 24.3 1E+02 0.0035 19.4 3.9 23 154-176 16-38 (57)
67 3e3v_A Regulatory protein RECX 23.5 2.6E+02 0.0088 21.6 10.9 134 16-175 25-161 (177)
68 1whc_A RSGI RUH-027, UBA/UBX 3 22.9 59 0.002 20.9 2.6 39 156-200 12-50 (64)
69 2dna_A Unnamed protein product 22.3 71 0.0024 21.0 2.9 41 150-197 16-57 (67)
70 3j20_Q 30S ribosomal protein S 22.2 21 0.00071 27.7 0.3 29 149-177 29-57 (158)
71 2jml_A DNA binding domain/tran 22.2 60 0.0021 21.6 2.7 22 51-72 55-77 (81)
72 3vus_A Poly-beta-1,6-N-acetyl- 21.5 2.8E+02 0.0096 22.9 7.4 58 4-61 25-93 (268)
73 3k9o_A Ubiquitin-conjugating e 21.4 86 0.003 25.0 3.9 28 150-177 160-187 (201)
74 3e3v_A Regulatory protein RECX 21.3 2.9E+02 0.0098 21.4 11.5 84 86-176 23-109 (177)
75 2crn_A Ubash3A protein; compac 20.2 77 0.0026 20.4 2.7 39 156-200 12-50 (64)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.6e-48 Score=344.28 Aligned_cols=250 Identities=16% Similarity=0.178 Sum_probs=230.5
Q ss_pred cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHH
Q 048223 11 TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKI 90 (286)
Q Consensus 11 ~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~ 90 (286)
|-.++++||.++|++.+++.+....+|.++++++++++.|+++||.++|+++++|++++.++|.+|.+++++ ++|+++|
T Consensus 4 ~~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~ 82 (270)
T 3m66_A 4 DHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAY 82 (270)
T ss_dssp HHHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHH
Confidence 446899999999999999988877778889999999999999999999999999999999999999999998 9999999
Q ss_pred HHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHH-HHcCCCCcch--HHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC
Q 048223 91 LRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASV-KEMGINPLRL--KFVLAIQAKCIMSESQWESKLHVY-KKWGWS 166 (286)
Q Consensus 91 L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l-~~lG~~~~~~--~~~~~~~~l~~~~~~~l~~~v~~l-~~lG~s 166 (286)
|+++|++.++|.+++.++|++|+.+.++++++++|| +++|++++.. ++.+.|.++. .+.++++++++++ +++||+
T Consensus 83 L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~-~s~e~~~~~v~~l~~~~G~s 161 (270)
T 3m66_A 83 LHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLT-GSLEPVKENMKVYRLELGFK 161 (270)
T ss_dssp HHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGT-SCSHHHHHHHHHHHHTSCCC
T ss_pred HHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCccee-echHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999 5899998764 3444566665 4778899999976 699999
Q ss_pred HHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCCChHHHhhCCCceecCCCCccchHHHHHHHHHHCCCCCCC---ccc
Q 048223 167 EQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSD---TTY 243 (286)
Q Consensus 167 ~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~~~---~~~ 243 (286)
.+|+..|+.++|+++++|.+++++|++||.++||++.++|+++|++|+||+| ||+|||.++++|.++|+...+ ++
T Consensus 162 ~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~- 239 (270)
T 3m66_A 162 HNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYIS- 239 (270)
T ss_dssp HHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCC-
T ss_pred HHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCC-
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999998654 45
Q ss_pred cccccccChhhHHHHhcC-CCC
Q 048223 244 LTTLLSYPEKTFMLRLMN-YDD 264 (286)
Q Consensus 244 l~~~l~~se~~F~~~~~~-~~~ 264 (286)
+.+++.+||++|+++|++ +.+
T Consensus 240 L~~~l~~sd~~F~~~~~~~~~e 261 (270)
T 3m66_A 240 LDKLVSIPDEIFCEEIAKASVQ 261 (270)
T ss_dssp HHHHHHSCHHHHHHHTTCSCHH
T ss_pred HHHHhcCCHHHHHHHHhcCCHH
Confidence 777999999999999999 763
No 2
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=2.3e-46 Score=341.04 Aligned_cols=251 Identities=18% Similarity=0.239 Sum_probs=201.0
Q ss_pred CCceeecCcccHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcc-cccC
Q 048223 1 IPKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYI-LYHD 79 (286)
Q Consensus 1 ~P~lL~~~~~~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~i-L~~s 79 (286)
+|+++..++++..++++||+++|++.+++++++.++|.+|+++.+ ++.|+++||+++|++++++++++.++|.+ ++.+
T Consensus 40 ~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~ 118 (343)
T 3mva_O 40 QPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSN 118 (343)
T ss_dssp CGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCC
T ss_pred CchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCC
Confidence 477888888888888888888888888888888888888888854 78888888888888888888888888884 4444
Q ss_pred cchhhhhHHHHHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCC-----cc-h--HHHHHHHHHhc----
Q 048223 80 ADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINP-----LR-L--KFVLAIQAKCI---- 147 (286)
Q Consensus 80 ~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~-----~~-~--~~~~~~~~l~~---- 147 (286)
.+++++|+++||+++|++.++|.+++.++|++++.+.+++++++++++++|++. .. . ++.+.|.++..
T Consensus 119 ~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~ 198 (343)
T 3mva_O 119 NNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKR 198 (343)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHH
T ss_pred hHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHH
Confidence 434688888888888888888888888888888888877788888887766531 11 1 11122333322
Q ss_pred --------------------------------CCHHHHHHHHHHHH----HcCCCHHHHHHHhhcCCccccccHHHHHHH
Q 048223 148 --------------------------------MSESQWESKLHVYK----KWGWSEQEWLAAFLKCPWCMITSEDKITAI 191 (286)
Q Consensus 148 --------------------------------~~~~~l~~~v~~l~----~lG~s~~~i~~~i~~~P~il~~s~~~l~~k 191 (286)
.+.+.++++++++. ++||+.+|+..|+.++|+++++|.+++++|
T Consensus 199 i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k 278 (343)
T 3mva_O 199 VKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDK 278 (343)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHH
Confidence 23344555554444 589999999999999999999999999999
Q ss_pred HHHHHhhcCCChHHHhhCCCceecCCCCccchHHHHHHHHHHCCCCCCCccccc--cccccChhhHHHHhcC
Q 048223 192 MDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLT--TLLSYPEKTFMLRLMN 261 (286)
Q Consensus 192 ~~fl~~~~g~~~~~i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~~~~~~l~--~~l~~se~~F~~~~~~ 261 (286)
++||.+ ||++.++|+++|++|+||+| ||+||| ++|+++|+ +++ ++ +++++||++|.++|..
T Consensus 279 ~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~---~~L~~~g~---~~~-~~~~~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 279 IDCLME-ENISISQIIENPRVLDSSIS-TLKSRI---KELVNAGC---NLS-TLNITLLSWSKKRYEAKLKK 341 (343)
T ss_dssp HHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHH---HHHHTTTC---CSS-SSCGGGGGSCHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHH---HHHHHCCC---CCC-CCcchhhcCCHHHHHHHHhc
Confidence 999999 99999999999999999999 999998 78999998 344 55 9999999999999864
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=284.26 Aligned_cols=208 Identities=18% Similarity=0.216 Sum_probs=185.7
Q ss_pred cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHH
Q 048223 11 TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKI 90 (286)
Q Consensus 11 ~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~ 90 (286)
++++.+++|.++||++++|+++++.+|.++.. ++.+++.||..+|++.++|.++|.++|++|++++++ |+++++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHH
Confidence 57888999999999999999999999999864 677999999999999999999999999999999975 9999999
Q ss_pred HHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHH
Q 048223 91 LRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYK-KWGWSEQE 169 (286)
Q Consensus 91 L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~-~lG~s~~~ 169 (286)
|+++|++.+++.+++.++|++|+++.++ +..++.+|. ++||+.++
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~----------------------------------i~~~v~~L~~~lGfS~~e 165 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQQD----------------------------------INDTVRLLKEKCLFTVQQ 165 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCHHH----------------------------------HHHHHHHHHHTSCCCHHH
T ss_pred HHHcCCCHHHHHHHHHhCchhhccChHH----------------------------------HHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999876544 444555664 79999999
Q ss_pred HHHHhhcCCccccccHHHHHHHHHHHHhhcCCChHHHhhCCCceecCCCCccchHHHHHHHHHHCCCCC----------C
Q 048223 170 WLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVK----------S 239 (286)
Q Consensus 170 i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~----------~ 239 (286)
+..|+.++|+||++|.++|++|++||+++||+++++|++ |++|+||++ ||+|||.+ |+..|... .
T Consensus 166 v~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~f---L~~lG~~q~~~~k~~~~~~ 240 (335)
T 4fp9_B 166 VTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIY---LERLGRYQTPDKKGQTQIP 240 (335)
T ss_dssp HHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHH---HHHHTSCCCCCSSSCCSSC
T ss_pred HHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHH---HHHcCCccCCCcccccCCC
Confidence 999999999999999999999999999999999999998 999999999 99999965 55555531 2
Q ss_pred CccccccccccChhhHHHHhcC-CC
Q 048223 240 DTTYLTTLLSYPEKTFMLRLMN-YD 263 (286)
Q Consensus 240 ~~~~l~~~l~~se~~F~~~~~~-~~ 263 (286)
.++ +.+++..||++|+.++.+ ..
T Consensus 241 nps-L~~il~~sd~~F~~~vA~~s~ 264 (335)
T 4fp9_B 241 NPL-LKDILRVSEAEFLARTACTSV 264 (335)
T ss_dssp CCC-HHHHTTSCHHHHHHHTSCCCH
T ss_pred Ccc-HHHHHcCCHHHHHHHHHhcCH
Confidence 356 899999999999999987 55
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=99.98 E-value=9.7e-33 Score=251.18 Aligned_cols=240 Identities=16% Similarity=0.184 Sum_probs=198.0
Q ss_pred HHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHHH
Q 048223 12 LLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKIL 91 (286)
Q Consensus 12 l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~L 91 (286)
-..+++||.++|++.+ .+++++|.++..+.+ +..++++||+++|+++++|++++.++|.+|.++++ ++.|+++||
T Consensus 19 ~~~~v~~L~s~Gl~~~---~~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL 93 (343)
T 3mva_O 19 NEDLLKNLLTMGVDID---MARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLW 93 (343)
T ss_dssp -CCHHHHHHHHTCCHH---HHHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHH---HHHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHH
Confidence 4568999999999954 567789999988875 88999999999999999999999999999999976 599999999
Q ss_pred HhcCCCchhHhhhhccCCe-eEEecch-hHHHHHHHHHHcCCCCcch--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 048223 92 RDSGVPESDIIKSIESWPK-LFLRHPK-FFEKNVASVKEMGINPLRL--KFVLAIQAKCIMSESQWESKLHVYKKWGWS- 166 (286)
Q Consensus 92 ~~~G~~~~~i~~~i~~~P~-ll~~~~~-~l~~~v~~l~~lG~~~~~~--~~~~~~~~l~~~~~~~l~~~v~~l~~lG~s- 166 (286)
+++|++++++.+++.++|+ +++...+ ++.++++||+++|++.+.. .+..+|+++.+ +.+..++++++++++|++
T Consensus 94 ~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~-~~e~~~~~v~~L~~lgv~~ 172 (343)
T 3mva_O 94 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSN-SLDLNKQMVEFLQAAGLSL 172 (343)
T ss_dssp TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhhee-CHHHhhHHHHHHHHhCCCc
Confidence 9999999999999999999 5666664 6999999999999998764 34555777765 566668999999866653
Q ss_pred -----HHHHHHHhhcCCccccccHHHHHHHHHHHHh----------------------------------------hcCC
Q 048223 167 -----EQEWLAAFLKCPWCMITSEDKITAIMDFFVN----------------------------------------GMGW 201 (286)
Q Consensus 167 -----~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~----------------------------------------~~g~ 201 (286)
.+.|.+|+.++|.++++|.++++++++||.+ ++|+
T Consensus 173 g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~ 252 (343)
T 3mva_O 173 GHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC 252 (343)
T ss_dssp TCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCC
Confidence 6788889999999988888788888888885 4677
Q ss_pred ChHHH----hhCCCceecCCCCccchHHHHHHHHHHCCCCCCCccccccccccChhhHHHHhcC
Q 048223 202 EPAVI----AKHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSYPEKTFMLRLMN 261 (286)
Q Consensus 202 ~~~~i----~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~~~~~~l~~~l~~se~~F~~~~~~ 261 (286)
+.+++ .++|++|++|.+ +|+++. +||.++|+..+++...|+++.+|-++..+||..
T Consensus 253 s~~ev~~~v~~~P~il~~s~~-~l~~k~---~fl~~mg~~~~~i~~~P~~l~~sleri~~R~~~ 312 (343)
T 3mva_O 253 TEEEVQKFVLSYPDVIFLAEK-KFNDKI---DCLMEENISISQIIENPRVLDSSISTLKSRIKE 312 (343)
T ss_dssp CHHHHHHHHHTCGGGGGSCHH-HHHHHH---HHHHTTTCCHHHHHHSGGGGGSCHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCchhcccHH-HHHHHH---HHHHHcCCCHHHHHhCCHHHhcCHHHHHHHHHH
Confidence 76665 588888888888 488874 677778887555444788888885588877743
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.98 E-value=9e-33 Score=243.52 Aligned_cols=189 Identities=15% Similarity=0.169 Sum_probs=174.5
Q ss_pred CceeecCcc-cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCc
Q 048223 2 PKVLLLSPE-TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDA 80 (286)
Q Consensus 2 P~lL~~~~~-~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~ 80 (286)
|.+|.++++ ++.|+++||.++|++.++|++++.++|.++++++++ +.|+++||+++|++++++++++.++|++|++|+
T Consensus 30 p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~ 108 (270)
T 3m66_A 30 NLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSV 108 (270)
T ss_dssp HHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCH
T ss_pred hhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCH
Confidence 566999999 999999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred chhhhhHHHHH-HhcCCCchhHhhhhccCCeeEEecchhHHHHHHHH-HHcCCCCcch--HHHHHHHHHhcCCHHHHHHH
Q 048223 81 DYYLLPNVKIL-RDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASV-KEMGINPLRL--KFVLAIQAKCIMSESQWESK 156 (286)
Q Consensus 81 e~~l~~~v~~L-~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l-~~lG~~~~~~--~~~~~~~~l~~~~~~~l~~~ 156 (286)
++ ++++++|| +++|++.+++.+++.++|++++.+.++++++++++ +++|++.+.. ++.++|+++. .+.++++++
T Consensus 109 ~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~-~s~~~l~~k 186 (270)
T 3m66_A 109 ER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLT-ANKMKLTET 186 (270)
T ss_dssp HH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGT-SCHHHHHHH
T ss_pred HH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhe-ecHHHHHHH
Confidence 86 99999999 57999999999999999999999999999999975 7899998864 4555677665 577999999
Q ss_pred HHHHH-HcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHh
Q 048223 157 LHVYK-KWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVN 197 (286)
Q Consensus 157 v~~l~-~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~ 197 (286)
++|+. ++|++.++|. ++|++|++|.++++++..|+..
T Consensus 187 ~~fL~~~mg~~~~~i~----~~P~~l~~Sleri~pR~~~l~~ 224 (270)
T 3m66_A 187 FDFVHNVMSIPHHIIV----KFPQVFNTRLFKVKERHLFLTY 224 (270)
T ss_dssp HHHHHTTSCCCHHHHH----HCGGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHH----hCchHhhCCHHHHHHHHHHHHH
Confidence 99995 7999998764 7999999998899999999987
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=182.07 Aligned_cols=156 Identities=18% Similarity=0.176 Sum_probs=138.1
Q ss_pred CCceeecCcccHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCc
Q 048223 1 IPKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDA 80 (286)
Q Consensus 1 ~P~lL~~~~~~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~ 80 (286)
+|.++ ..++.+++.||.++|++.++|++++.++|.+|+.+++ +|.|+++||+++|++.+++++++.++|.+|+++.
T Consensus 70 ~P~il---~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s~ 145 (335)
T 4fp9_B 70 RRGAS---LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ 145 (335)
T ss_dssp CSSCC---HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSCH
T ss_pred Ccccc---hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHHHHcCCCHHHHHHHHHhCchhhccCh
Confidence 46665 2378899999999999999999999999999999996 8999999999999999999999999999999999
Q ss_pred chhhhhHHHHHH-hcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 048223 81 DYYLLPNVKILR-DSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHV 159 (286)
Q Consensus 81 e~~l~~~v~~L~-~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~ 159 (286)
+. +..++.+|. ++|++.++|.+++.++|.+|+.+ .++++++++|
T Consensus 146 e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S----------------------------------~e~L~~K~ef 190 (335)
T 4fp9_B 146 QD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED----------------------------------LGQLEYKFQY 190 (335)
T ss_dssp HH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC----------------------------------HHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC----------------------------------HHHHHHHHHH
Confidence 86 999999986 59999999999999999999875 4456666777
Q ss_pred HH-HcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCC
Q 048223 160 YK-KWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGW 201 (286)
Q Consensus 160 l~-~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~ 201 (286)
|. ++|++.++|. + |++|+||.++|+++..||.. +|.
T Consensus 191 Lv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 191 AYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp HHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred HHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence 75 7888888875 2 88999998899999999998 886
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.40 E-value=2.4e-12 Score=100.00 Aligned_cols=177 Identities=16% Similarity=0.215 Sum_probs=143.0
Q ss_pred cchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHHHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHH
Q 048223 47 HLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASV 126 (286)
Q Consensus 47 ~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l 126 (286)
.+...+.-+.-+|+.++-+.-++.+.|.+|....-. ++.+-.||+.+|+.+..+.+++.-||.+|++....+..
T Consensus 32 qlldiisefillglnpepvcvvlkkspqllklpimq-mrkrssylqklglgegklkrvlyccpeiftmrqqdind----- 105 (239)
T 4fzv_B 32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDIND----- 105 (239)
T ss_dssp TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHH-----
T ss_pred HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhH-----
Confidence 444555555567899999999999999999998865 88899999999999999999999999999876544444
Q ss_pred HHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCCChHH
Q 048223 127 KEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYK-KWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAV 205 (286)
Q Consensus 127 ~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~-~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~ 205 (286)
.+..++ .+=|+..++.+++..||+++.-+...++-|++|-.-.||+.+-+
T Consensus 106 -----------------------------tvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpd 156 (239)
T 4fzv_B 106 -----------------------------TVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPD 156 (239)
T ss_dssp -----------------------------HHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHH
T ss_pred -----------------------------HHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcc
Confidence 444444 46689999999999999999988889999999998889999999
Q ss_pred HhhCCCceecCCCCccchHHHHHHHHHHCCCCC-------CCccccccccccChhhHHHHhcC
Q 048223 206 IAKHPALTTFSMEKRIIPRGAVIQFLLSKGLVK-------SDTTYLTTLLSYPEKTFMLRLMN 261 (286)
Q Consensus 206 i~~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~-------~~~~~l~~~l~~se~~F~~~~~~ 261 (286)
|++. .+|.||+. +|+.||-+++.|-+-.-+. +++- +.+++..||.+|..+-..
T Consensus 157 ivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpl-lkdilrvseaeflartac 216 (239)
T 4fzv_B 157 IVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPL-LKDILRVSEAEFLARTAC 216 (239)
T ss_dssp HHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCC-HHHHHTSCHHHHHHHTSC
T ss_pred hhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChH-HHHHHHHhHHHHHHHHhc
Confidence 9885 79999999 7999997766664321111 1233 688999999999988776
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.24 E-value=3e-06 Score=65.83 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=93.8
Q ss_pred HHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhcCchHHHHHHHhCCcccccCcchhhhhHHHHHHh-
Q 048223 15 KLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRFPYILYHDADYYLLPNVKILRD- 93 (286)
Q Consensus 15 ~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~L~~- 93 (286)
.+.-+--+|+.++-+.-++.+.|+++...+. .+..+-.||+.+|+-...+.+++--||.++++.-.+ +..++..|++
T Consensus 36 iisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqd-indtvrllkek 113 (239)
T 4fzv_B 36 IISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEK 113 (239)
T ss_dssp HHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHH-HHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhh-HhHHHHHHHHh
Confidence 4445556899999999999999999998875 888899999999999999999999999999999765 9999999998
Q ss_pred cCCCchhHhhhhccCCeeEEecchhHHHHHH
Q 048223 94 SGVPESDIIKSIESWPKLFLRHPKFFEKNVA 124 (286)
Q Consensus 94 ~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~ 124 (286)
+-++-.++-+++.+||.++.-+...++-++.
T Consensus 114 clftvqqvtkilhscpsvlredlgqleykfq 144 (239)
T 4fzv_B 114 CLFTVQQVTKILHSCPSVLREDLGQLEYKFQ 144 (239)
T ss_dssp SCCCHHHHHHHHHHCGGGGTSCTTHHHHHHH
T ss_pred HHhhHHHHHHHHHhCcHHHHHHHhhhhhhHh
Confidence 8899999999999999999766555554443
No 9
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=91.25 E-value=0.34 Score=30.84 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHhhc
Q 048223 117 KFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLK 176 (286)
Q Consensus 117 ~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~~lG~s~~~i~~~i~~ 176 (286)
+.+...+.||++=.+. ...+..+++||++-|++.+||..++.+
T Consensus 11 ~li~~Av~FL~dp~V~-----------------~sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 11 PLIATAVKFLQNSRVR-----------------QSPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHCTTGG-----------------GSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCChhhh-----------------cCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4477777777653322 233678999999999999999998875
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=87.50 E-value=0.61 Score=29.64 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=21.6
Q ss_pred cHHHHHHHHhhCCCChhhHHHHHhh
Q 048223 11 TLLRKLEFFHCEGISNPDTVKILSK 35 (286)
Q Consensus 11 ~l~~~l~fL~~~G~~~~~i~~i~~~ 35 (286)
.+..+++||++.|++.++|...+.+
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4678999999999999999888765
No 11
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=86.41 E-value=0.65 Score=41.76 Aligned_cols=39 Identities=15% Similarity=0.006 Sum_probs=29.9
Q ss_pred cHHHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHh
Q 048223 11 TLLRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSH 57 (286)
Q Consensus 11 ~l~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~ 57 (286)
.....|+.|.++||+++++.+.+...- ++...-++||.+
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~~ 205 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 205 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTTT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 477889999999999999999887542 355566777753
No 12
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=85.95 E-value=4.7 Score=29.91 Aligned_cols=96 Identities=8% Similarity=-0.006 Sum_probs=63.5
Q ss_pred HHHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHh------hhcCchHHHHHHHhCCcccccCcch--hh
Q 048223 13 LRKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSH------LLHSSEKTIALIIRFPYILYHDADY--YL 84 (286)
Q Consensus 13 ~~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~------~g~~~~~i~~ii~~~P~iL~~s~e~--~l 84 (286)
+..++-|.++||+...+.+.+.+.- ++....++||.. -|.++.++...+..+. .+..+ .-
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g--------~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~----~~~~~~~~~ 76 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAG--------ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQ----CSEEKMMEF 76 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCS----SCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC--------cCHHHHHHHHHHhchhcccCCChhhhHHHHHhcc----CCccccccC
Confidence 3467788999999999888876542 145566777653 4566667766666532 12111 12
Q ss_pred hhHHHHHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHH
Q 048223 85 LPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVK 127 (286)
Q Consensus 85 ~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~ 127 (286)
...+.-|.++||+.+.+.+.+..+ .+.+...++||.
T Consensus 77 ~~~v~~L~eMGF~~~~a~~AL~~~-------~nd~erAlewL~ 112 (118)
T 4ae4_A 77 LQLMSKFKEMGFELKDIKEVLLLH-------NNDQDNALEDLM 112 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT-------TTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHH
Confidence 245788888999999998887643 345777777764
No 13
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=85.49 E-value=1 Score=30.13 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 048223 116 PKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWLAAFLKC 177 (286)
Q Consensus 116 ~~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~~lG~s~~~i~~~i~~~ 177 (286)
++.+...+.||++=-+. ...+..|++||++-|++.+||..++.+.
T Consensus 15 e~li~~Av~FLqdp~V~-----------------~sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 15 EPLIATAVKFLQNSRVR-----------------QSPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHHCSTTGG-----------------GSCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhh-----------------hCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 44577777777642222 2336789999999999999999998874
No 14
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=84.76 E-value=2 Score=32.02 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=57.0
Q ss_pred hhHHHHHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHH------HcCCCCcchHHHHHHHHHhcCCHH---HHHH
Q 048223 85 LPNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVK------EMGINPLRLKFVLAIQAKCIMSES---QWES 155 (286)
Q Consensus 85 ~~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~------~lG~~~~~~~~~~~~~~l~~~~~~---~l~~ 155 (286)
+..+..|.++|++...+.+.+..+- . ..+..++||. +.|+++... -.++. ....+.. ...+
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g------~-~~e~amewL~~h~~L~d~~~d~~~~--e~~l~-~~~~~~~~~~~~~~ 78 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAG------A-NIEQILDYLFAHGQLCEKGFDPLLV--EEALE-MHQCSEEKMMEFLQ 78 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC------S-CHHHHHHHHHHHHHHHHTTCCHHHH--HHHHH-HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC------c-CHHHHHHHHHHhchhcccCCChhhh--HHHHH-hccCCccccccCHH
Confidence 3567778888888888888776531 1 4555566653 345544221 11111 1111221 1345
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcC
Q 048223 156 KLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMG 200 (286)
Q Consensus 156 ~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g 200 (286)
.|.-|.++||+.+++...++.+ ...+.+-+|+|....|
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~-------~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLH-------NNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT-------TTCHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHHhcc
Confidence 7888889999999888876543 3456666777765443
No 15
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=81.78 E-value=1.4 Score=29.47 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=22.6
Q ss_pred cHHHHHHHHhhCCCChhhHHHHHhhC
Q 048223 11 TLLRKLEFFHCEGISNPDTVKILSKY 36 (286)
Q Consensus 11 ~l~~~l~fL~~~G~~~~~i~~i~~~~ 36 (286)
.+..+++||++.|++.++|...+.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 46789999999999999999988874
No 16
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=74.45 E-value=2.5 Score=28.41 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=33.0
Q ss_pred HHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHH--HHhHhhhcCchHHHHHHH
Q 048223 15 KLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTF--NSLSHLLHSSEKTIALII 70 (286)
Q Consensus 15 ~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~--~~L~~~g~~~~~i~~ii~ 70 (286)
.++||.+.|++...-.+-... +-...++.++.|-+ +.|+++|+...+|.++++
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~---F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTIN---FDREQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH---HHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHH---HHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 567888888886555443222 12334445666655 578888887777766654
No 17
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=72.66 E-value=6.8 Score=30.22 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=19.6
Q ss_pred CceeecCcccHHHHHHHHhhCCCChhhHHHHHhh
Q 048223 2 PKVLLLSPETLLRKLEFFHCEGISNPDTVKILSK 35 (286)
Q Consensus 2 P~lL~~~~~~l~~~l~fL~~~G~~~~~i~~i~~~ 35 (286)
|.=+..++++++..|--|..-|+++++|+-++.-
T Consensus 25 P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD 58 (153)
T 2xzm_O 25 PKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRD 58 (153)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhh
Confidence 4444555555666666666666666666655543
No 18
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=71.59 E-value=6.7 Score=30.23 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=20.4
Q ss_pred CceeecCcccHHHHHHHHhhCCCChhhHHHHHhh
Q 048223 2 PKVLLLSPETLLRKLEFFHCEGISNPDTVKILSK 35 (286)
Q Consensus 2 P~lL~~~~~~l~~~l~fL~~~G~~~~~i~~i~~~ 35 (286)
|.=+..++++++..|--|..-|+++++|+-++.-
T Consensus 23 P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD 56 (151)
T 3u5c_N 23 PAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRD 56 (151)
T ss_dssp CSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhc
Confidence 4445555556666666666666666666666554
No 19
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.14 E-value=7.9 Score=23.75 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHh
Q 048223 151 SQWESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVN 197 (286)
Q Consensus 151 ~~l~~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~ 197 (286)
..-.++|+.|.++||+++++...++.+- .++..-++||..
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~e~L~~ 45 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTT-------SCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 3356788899999999999988877442 135556677765
No 20
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=67.13 E-value=4.4 Score=25.32 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhh
Q 048223 150 ESQWESKLHVYKKWGWSEQEWLAAFL 175 (286)
Q Consensus 150 ~~~l~~~v~~l~~lG~s~~~i~~~i~ 175 (286)
.+.+...|+-|.++||+++++.+.+.
T Consensus 8 ~~~~~~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp ---CHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCChHHHHHHHHHcCCCHHHHHHHHH
Confidence 34556789999999999999988765
No 21
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=66.57 E-value=9.7 Score=23.76 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=25.5
Q ss_pred Ccc-cHHHHHHHHhhCCC-ChhhHHHHHhhCCCceeccccCcchhHHHHhHh
Q 048223 8 SPE-TLLRKLEFFHCEGI-SNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSH 57 (286)
Q Consensus 8 ~~~-~l~~~l~fL~~~G~-~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~ 57 (286)
.++ .....|+-|.++|| +.....+.+... ..++...++||.+
T Consensus 6 ~pe~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~ 49 (53)
T 2knz_A 6 MPEVRFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLG 49 (53)
T ss_dssp CTHHHHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 345 66777788888888 655555555432 1355566666654
No 22
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=64.87 E-value=6.6 Score=24.69 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=20.5
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCCC
Q 048223 157 LHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWE 202 (286)
Q Consensus 157 v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~ 202 (286)
++-|.++||+.+-+...+.+ .....+++.++||.+ |+++
T Consensus 13 lq~L~eMGFd~erae~Alk~------Tg~~Gle~AmewL~k-~~~~ 51 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQ------TGSRSIEAALEYISK-MSGP 51 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHH------HTSCCHHHHHHHHHH-HSCS
T ss_pred HHHHHHcCCCHHHHHHHHHH------hCcccHHHHHHHHHH-hcCC
Confidence 45555666666544443321 112236666777766 6654
No 23
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=62.23 E-value=8.6 Score=22.05 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcC
Q 048223 154 ESKLHVYKKWGWSEQEWLAAFLKC 177 (286)
Q Consensus 154 ~~~v~~l~~lG~s~~~i~~~i~~~ 177 (286)
.++|+-|.++||++++....+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456778888899988887766543
No 24
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=61.35 E-value=5.2 Score=23.67 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHh
Q 048223 155 SKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVN 197 (286)
Q Consensus 155 ~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~ 197 (286)
++|+-|.++||++++..+.+..+ ...+..-++||..
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~-------~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC-------NWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH-------TSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh-------CcCHHHHHHHHHc
Confidence 56788889999998887776542 1134455566543
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=60.27 E-value=11 Score=23.53 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHhhcCCccccccHHHHHHHHHHHHh
Q 048223 149 SESQWESKLHVYKKWGW-SEQEWLAAFLKCPWCMITSEDKITAIMDFFVN 197 (286)
Q Consensus 149 ~~~~l~~~v~~l~~lG~-s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~ 197 (286)
.++...++|+-|.++|| +++.....+..+ ...+..-++||..
T Consensus 7 pe~~~~~~l~~L~~MGF~~~~~~~~AL~~t-------~gnve~Ave~L~~ 49 (53)
T 2knz_A 7 PEVRFQQQLEQLNSMGFINREANLQALIAT-------GGDINAAIERLLG 49 (53)
T ss_dssp THHHHHHHHHHHHTTTCCCHHHHHHHHHHH-------TSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 34566777888888888 666655544321 1245666666665
No 26
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=59.11 E-value=11 Score=22.78 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhh
Q 048223 152 QWESKLHVYKKWGWSEQEWLAAFL 175 (286)
Q Consensus 152 ~l~~~v~~l~~lG~s~~~i~~~i~ 175 (286)
.++..|+.|.+.||+++++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 467788899999999999887764
No 27
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.12 E-value=12 Score=23.46 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHhh
Q 048223 154 ESKLHVYKKWGWSEQEWLAAFL 175 (286)
Q Consensus 154 ~~~v~~l~~lG~s~~~i~~~i~ 175 (286)
...|+-|.++||+++++.+.+.
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~ 31 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALV 31 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4568889999999999888765
No 28
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.17 E-value=15 Score=28.50 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=27.7
Q ss_pred CceeecCcccHHHHHHHHhhCCCChhhHHHHHhhC
Q 048223 2 PKVLLLSPETLLRKLEFFHCEGISNPDTVKILSKY 36 (286)
Q Consensus 2 P~lL~~~~~~l~~~l~fL~~~G~~~~~i~~i~~~~ 36 (286)
|.=+..++|+++..|--|..-|+++++|+-++.-.
T Consensus 23 P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 23 PIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 55667777788888888888888888888888754
No 29
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=52.96 E-value=25 Score=22.76 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=30.5
Q ss_pred HHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCCChHHHh
Q 048223 159 VYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIA 207 (286)
Q Consensus 159 ~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~i~ 207 (286)
.-+.+|+|...|.+++...+.-...+.++.++-.+...+ +|+.++..+
T Consensus 6 iA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~-lgY~pn~~a 53 (65)
T 1uxc_A 6 IARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE-HNYHPNAVA 53 (65)
T ss_dssp HHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHH-HTCCCC---
T ss_pred HHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH-hCCCccHHH
Confidence 345789999999999987763234566655555555554 888766543
No 30
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.21 E-value=12 Score=24.29 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHh
Q 048223 155 SKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVN 197 (286)
Q Consensus 155 ~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~ 197 (286)
+.|+.|.++||+++++...++.+= .++..-++||..
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 567888899999998877766431 246677788876
No 31
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=50.87 E-value=18 Score=22.71 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhh
Q 048223 151 SQWESKLHVYKKWGWSEQEWLAAFL 175 (286)
Q Consensus 151 ~~l~~~v~~l~~lG~s~~~i~~~i~ 175 (286)
...+..|+-|.++||+++++.+.+.
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHH
Confidence 3456788899999999999887654
No 32
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=50.54 E-value=9.4 Score=25.70 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHh
Q 048223 153 WESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVN 197 (286)
Q Consensus 153 l~~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~ 197 (286)
.+++|+-|.++||+++++...++++ ..++..-++||..
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~-------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAA-------DDDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHH-------TSCHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 3567788889999999888877642 2246667788776
No 33
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.37 E-value=15 Score=25.40 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCC
Q 048223 154 ESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGW 201 (286)
Q Consensus 154 ~~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~ 201 (286)
.++|+-|.++||+++++...++.. -..+.+-++||....|-
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t-------~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVF-------GGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHT-------TTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHhCCCC
Confidence 457888999999999998887633 23478889999987773
No 34
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.17 E-value=13 Score=22.41 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHh
Q 048223 154 ESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVN 197 (286)
Q Consensus 154 ~~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~ 197 (286)
.+.|+.|.++||++++..+.++.. + +++.-++||..
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~----~----n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT----S----TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS----C----SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C----CHHHHHHHHHc
Confidence 356788889999999888887754 2 46666777764
No 35
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.56 E-value=17 Score=23.40 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhc
Q 048223 154 ESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGM 199 (286)
Q Consensus 154 ~~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~ 199 (286)
.+.|+.|.++||++++..+.++.+-. +++.-++||...+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 35678888999999998888875521 4677778887744
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=47.21 E-value=17 Score=24.31 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhh
Q 048223 155 SKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNG 198 (286)
Q Consensus 155 ~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~ 198 (286)
++|+.|.++||+++++.+.++.+- .++..-++||...
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~~ 67 (73)
T 1wiv_A 31 SSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 467888899999999888776432 2566777888763
No 37
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.85 E-value=25 Score=22.76 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhh
Q 048223 156 KLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNG 198 (286)
Q Consensus 156 ~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~ 198 (286)
.|+.|.++||+++++.+.++.+-. ..++.-++||.+.
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~~ 58 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHhC
Confidence 456677777777777766553221 2456666666653
No 38
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=44.09 E-value=23 Score=21.89 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=16.5
Q ss_pred cc-cHHHHHHHHhhCCC-ChhhHHHHHh
Q 048223 9 PE-TLLRKLEFFHCEGI-SNPDTVKILS 34 (286)
Q Consensus 9 ~~-~l~~~l~fL~~~G~-~~~~i~~i~~ 34 (286)
++ .....|+-|.++|| +.....+.+.
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~ 35 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALI 35 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44 56677777777787 5555455444
No 39
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=43.93 E-value=26 Score=22.83 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=29.7
Q ss_pred HhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcc
Q 048223 92 RDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLR 135 (286)
Q Consensus 92 ~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~ 135 (286)
+..|++..-|.+++...|. .++++.+...+..+++|+.++.
T Consensus 17 ~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 17 LKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCccH
Confidence 3489999999999987764 3555666666778889987653
No 40
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=43.25 E-value=9.3 Score=23.23 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCHHHHHHHhhc
Q 048223 155 SKLHVYKKWGWSEQEWLAAFLK 176 (286)
Q Consensus 155 ~~v~~l~~lG~s~~~i~~~i~~ 176 (286)
++|+-|.++||++.++.+.+..
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a 27 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFA 27 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4566677888888877766543
No 41
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=42.46 E-value=18 Score=23.44 Aligned_cols=44 Identities=27% Similarity=0.260 Sum_probs=27.6
Q ss_pred HhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcc
Q 048223 92 RDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLR 135 (286)
Q Consensus 92 ~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~ 135 (286)
+..|++...|.+++...+.-...++++.+...+..+++|+.++.
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 34788888888888766521223455555566667778877653
No 42
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=42.40 E-value=13 Score=28.57 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=16.4
Q ss_pred CCceeccccCcchhHHHHhHhhhcCchHHHHHHHhC
Q 048223 37 PGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRF 72 (286)
Q Consensus 37 P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~ 72 (286)
|..+..+.+ ++...+.-|..-|.++.+||-++...
T Consensus 25 P~W~~~~~e-eVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 25 PKWLHMTPS-TVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp CSSCCCCHH-HHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CccccCCHH-HHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 444444433 44444444444555555555554444
No 43
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=41.93 E-value=29 Score=20.85 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHcCCCH-HHHHHHh
Q 048223 150 ESQWESKLHVYKKWGWSE-QEWLAAF 174 (286)
Q Consensus 150 ~~~l~~~v~~l~~lG~s~-~~i~~~i 174 (286)
++..+++|+-|.++||+. +.+.+.+
T Consensus 4 ~~~~~~~i~~L~~MGF~d~~~~~~AL 29 (46)
T 2bwb_A 4 EERYEHQLRQLNDMGFFDFDRNVAAL 29 (46)
T ss_dssp HHHTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 345567778888888854 3334433
No 44
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=39.18 E-value=52 Score=19.05 Aligned_cols=22 Identities=36% Similarity=0.420 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHH
Q 048223 152 QWESKLHVYKKWGWSEQEWLAA 173 (286)
Q Consensus 152 ~l~~~v~~l~~lG~s~~~i~~~ 173 (286)
.++.-++.++.-||+++++..+
T Consensus 4 alkselqalkkegfspeelaal 25 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAAL 25 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 4566777888899999988764
No 45
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=38.07 E-value=65 Score=20.80 Aligned_cols=45 Identities=16% Similarity=0.057 Sum_probs=28.8
Q ss_pred HHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCCChHHHh
Q 048223 159 VYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIA 207 (286)
Q Consensus 159 ~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~i~ 207 (286)
.-+..|+|...|..++...|. .+.++-++-.+...+ +|+.++..+
T Consensus 15 iA~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~-lgY~pn~~a 59 (67)
T 2l8n_A 15 VALKAKVSTATVSRALMNPDK---VSQATRNRVEKAARE-VGYLPQPMG 59 (67)
T ss_dssp HHHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHH-HCCCC----
T ss_pred HHHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHH-hCCCccHHH
Confidence 345789999999998877664 466665555555554 999766544
No 46
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=37.30 E-value=33 Score=21.77 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHhhcCCccccccHHHHHHHHHHHHh
Q 048223 150 ESQWESKLHVYKKWGWS-EQEWLAAFLKCPWCMITSEDKITAIMDFFVN 197 (286)
Q Consensus 150 ~~~l~~~v~~l~~lG~s-~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~ 197 (286)
++..+++|+-|.++||+ ++.+.+.+. .+-..+..-++||..
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~-------~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALR-------RSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHH-------HHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHH-------HhCCCHHHHHHHHHh
Confidence 45667788888888885 444344433 222345556666654
No 47
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=36.86 E-value=1.4e+02 Score=22.83 Aligned_cols=137 Identities=11% Similarity=0.057 Sum_probs=79.5
Q ss_pred HHHHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhc-CchHHHHHHHhCCcccccCcchhhhhHHHHHH
Q 048223 14 RKLEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH-SSEKTIALIIRFPYILYHDADYYLLPNVKILR 92 (286)
Q Consensus 14 ~~l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~-~~~~i~~ii~~~P~iL~~s~e~~l~~~v~~L~ 92 (286)
--+.+|..-.-|..++..-+.+. +.+ +..+...++.|.+.|. ++........+.-.-=+.+. .....-|+
T Consensus 22 ~Al~~Ls~r~~s~~EL~~KL~~k----g~~-~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G~----~~I~~eL~ 92 (162)
T 3dfg_A 22 RALGLLVHREHSKKELNRKLQAR----GIE-PEAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYGP----LHIRAELG 92 (162)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHT----TCC-HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCCH----HHHHHHHH
T ss_pred HHHHHhhchhhhHHHHHHHHHhc----CCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccH----HHHHHHHH
Confidence 34556666677777777766654 222 2367788899999885 55555544433211112332 22335588
Q ss_pred hcCCCchhHhhhhccCCeeEEecchhHHHHHHHH-HHcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHH
Q 048223 93 DSGVPESDIIKSIESWPKLFLRHPKFFEKNVASV-KEMGINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGWSEQEWL 171 (286)
Q Consensus 93 ~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l-~~lG~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~~lG~s~~~i~ 171 (286)
..|++.+.|..++.... .+........+ +.+|-.. ......-...+.||..-||+.+.|.
T Consensus 93 ~KGI~~~~I~~al~~~~------~de~e~a~~l~~Kk~~~~~-------------~~~~~~k~K~~~~L~rrGF~~~~I~ 153 (162)
T 3dfg_A 93 THGLDSDAVSAAMATFE------GDWTENALDLIRRRFGEDG-------------PVDLAQRRKAADLLARRGFDGNSIR 153 (162)
T ss_dssp HTTCCHHHHHHHHTTCC------SCHHHHHHHHHHHHHCTTC-------------CCSHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HcCCCHHHHHHHHHhCc------HhHHHHHHHHHHHhcCCCC-------------CCCHHHHHHHHHHHHHCCCCHHHHH
Confidence 89999999999887653 12233232322 2233210 0122333456689999999999999
Q ss_pred HHhhcCC
Q 048223 172 AAFLKCP 178 (286)
Q Consensus 172 ~~i~~~P 178 (286)
.++...|
T Consensus 154 ~~l~~~~ 160 (162)
T 3dfg_A 154 LATRFDL 160 (162)
T ss_dssp HHTTC--
T ss_pred HHHhcCc
Confidence 8876543
No 48
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=36.08 E-value=87 Score=20.21 Aligned_cols=43 Identities=7% Similarity=0.025 Sum_probs=26.1
Q ss_pred HcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcCCChHHHh
Q 048223 162 KWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMGWEPAVIA 207 (286)
Q Consensus 162 ~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g~~~~~i~ 207 (286)
.+|++...+.++.... -..+.+.+..-++.|...+|++.+++.
T Consensus 32 ~~gis~~~i~~~e~g~---~~~~~~~l~~~~~~l~~~~~v~~~~l~ 74 (84)
T 2ef8_A 32 FLGLSQSDISKIESFE---RRLDALELFELLEVVASRLGLPMDILL 74 (84)
T ss_dssp HHTCCHHHHHHHHTTS---SCCBHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHccccCCCHHHHH
Confidence 4555655555554321 123455666667777777799988875
No 49
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=35.52 E-value=44 Score=21.43 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhhcC
Q 048223 152 QWESKLHVYKKWGWSEQEWLAAFLKC 177 (286)
Q Consensus 152 ~l~~~v~~l~~lG~s~~~i~~~i~~~ 177 (286)
...+.+.-|..+||+..|+.+++.+.
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44678888899999999999988753
No 50
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=34.74 E-value=14 Score=28.48 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=18.1
Q ss_pred CCceeccccCcchhHHHHhHhhhcCchHHHHHHHhC
Q 048223 37 PGLLSRSLDNHLIPTFNSLSHLLHSSEKTIALIIRF 72 (286)
Q Consensus 37 P~il~~~~~~~l~~~~~~L~~~g~~~~~i~~ii~~~ 72 (286)
|.-+..+.+ ++...+--|..-|.++.+|+-++...
T Consensus 23 P~W~~~~~e-eVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 23 PAWFKLSSE-SVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp CSSCCSCHH-HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCcCCCHH-HHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 444444443 45555555555555555555555544
No 51
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=34.23 E-value=1.3e+02 Score=29.46 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=24.1
Q ss_pred HcCCCHHHHHHHhhcCCccccc-cHHHHHHHHHHHHhhcCCChHHHh
Q 048223 162 KWGWSEQEWLAAFLKCPWCMIT-SEDKITAIMDFFVNGMGWEPAVIA 207 (286)
Q Consensus 162 ~lG~s~~~i~~~i~~~P~il~~-s~~~l~~k~~fl~~~~g~~~~~i~ 207 (286)
+.||+.+++..|-.. .=+. .-+.+.+...-|....|++.++|+
T Consensus 421 ~~glt~~qvv~IAsn---~GGkQALe~V~~llp~L~~~~glt~aqvV 464 (1047)
T 3ugm_A 421 AHGLTPDQVVAIASH---DGGKQALETVQRLLPVLCQTHGLTPAQVV 464 (1047)
T ss_dssp TSSCCHHHHHHHHSS---TTTHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred hcCCCHHHhhhhhcc---CchHHHHHHHHHHhHHhhcccCCCHHHHH
Confidence 577777777766431 1111 134555555566655677766654
No 52
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=33.31 E-value=23 Score=26.72 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHhCCcccccCcchhhhhHHHHHHhcCCCchhHhhhhccCCe
Q 048223 66 IALIIRFPYILYHDADYYLLPNVKILRDSGVPESDIIKSIESWPK 110 (286)
Q Consensus 66 ~~ii~~~P~iL~~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~ 110 (286)
-+.+.+.|.-...+.+. +..-++.|+..|+++.++.+++.-+|.
T Consensus 60 l~YL~~~p~~~~q~~e~-i~~l~~~L~~~~Ltk~E~LqivNl~P~ 103 (136)
T 3ayh_A 60 LKYLSSQGNCEGLTKER-FLDCIAIFNEFELTKAEILVILNNKPS 103 (136)
T ss_dssp HHHHHTTTCCTTCCHHH-HHHHHHTTTTTCCCHHHHHHHHHHCCC
T ss_pred HHHHHhCCCccccCHHH-HHHHHHHHHhcCCCHHHHHHHhccCCC
Confidence 34445555554456554 888888888899999999999998885
No 53
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.82 E-value=37 Score=22.70 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcC
Q 048223 155 SKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMG 200 (286)
Q Consensus 155 ~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g 200 (286)
..|+-|.++||+++++.+.++.+ ....++.-++||.+.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t------~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYT------GNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHH------TSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh------CCCCHHHHHHHHHhCCC
Confidence 46778889999999888876532 11247888999998554
No 54
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.26 E-value=56 Score=23.47 Aligned_cols=42 Identities=14% Similarity=0.411 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHc-CCCHHHHHHHhhcCCccccccHHHHHHHHHHHHh
Q 048223 149 SESQWESKLHVYKKW-GWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVN 197 (286)
Q Consensus 149 ~~~~l~~~v~~l~~l-G~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~ 197 (286)
+...++++|+.+.++ ||+++++...+..+ .-.+..-+++|.+
T Consensus 35 ~d~d~eekVk~L~EmtG~seeeAr~AL~~~-------ngDl~~AI~~Lle 77 (104)
T 1wj7_A 35 NDADFEEKVKQLIDITGKNQDECVIALHDC-------NGDVNRAINVLLE 77 (104)
T ss_dssp CCHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------TSCHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHhhCCCHHHHHHHHHHc-------CCCHHHHHHHHHh
Confidence 445678899999988 99999888766422 1145556777776
No 55
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=31.12 E-value=37 Score=23.50 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCHHHHHHHhh
Q 048223 155 SKLHVYKKWGWSEQEWLAAFL 175 (286)
Q Consensus 155 ~~v~~l~~lG~s~~~i~~~i~ 175 (286)
..|..++++|||-++|..++.
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~ 27 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLS 27 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHH
Confidence 467888899999999999985
No 56
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.92 E-value=43 Score=22.94 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcC
Q 048223 155 SKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMG 200 (286)
Q Consensus 155 ~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g 200 (286)
..|+-|.++||+.+++.+.++.+ ...++.-++||.+.++
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~t-------~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 31 AALRQLTEMGFPENRATKALQLN-------HMSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHHCCC
Confidence 45677889999999888877643 2357778889887543
No 57
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=30.66 E-value=83 Score=21.04 Aligned_cols=45 Identities=20% Similarity=0.057 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHc-----CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048223 117 KFFEKNVASVKEM-----GINPLRLKFVLAIQAKCIMSESQWESKLHVYKKWGW 165 (286)
Q Consensus 117 ~~l~~~v~~l~~l-----G~~~~~~~~~~~~~~l~~~~~~~l~~~v~~l~~lG~ 165 (286)
++.+..++++++- |.++....+..+ ...|..+++.-++.|.+-|+
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~----lgvS~~TVrr~L~~Le~kG~ 53 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADA----AGLSIYQVRLYLEQLHDVGV 53 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHH----HCCCHHHHHHHHHHHHHCCc
Confidence 3455566666555 555443322222 12245556666666655543
No 58
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.11 E-value=35 Score=22.06 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhc
Q 048223 154 ESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGM 199 (286)
Q Consensus 154 ~~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~ 199 (286)
.+.|+-+.++||++++..+.+++. ..++++-+|||-..+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat-------~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKK-------GENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-------CSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHhCC
Confidence 456888899999999998877643 346778888887654
No 59
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.09 E-value=65 Score=22.12 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhh
Q 048223 154 ESKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNG 198 (286)
Q Consensus 154 ~~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~ 198 (286)
.++|+-|.++||+++++.+.+.. ....++.-++||...
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~-------~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKS-------NNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH-------TTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH-------cCCCHHHHHHHHHHC
Confidence 67788888999999887776532 223577788888873
No 60
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.45 E-value=1.1e+02 Score=19.09 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHHcCCCC
Q 048223 116 PKFFEKNVASVKEMGINP 133 (286)
Q Consensus 116 ~~~l~~~v~~l~~lG~~~ 133 (286)
++...+.+.-|+++||.+
T Consensus 6 ee~~a~~L~~L~eMGF~D 23 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCD 23 (54)
T ss_dssp CTTHHHHHHHHHHHTCCC
T ss_pred HHhhHHHHHHHHHcCCCc
Confidence 345666677777777754
No 61
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.09 E-value=40 Score=21.02 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=8.3
Q ss_pred cHHHHHHHHhhCCCChh
Q 048223 11 TLLRKLEFFHCEGISNP 27 (286)
Q Consensus 11 ~l~~~l~fL~~~G~~~~ 27 (286)
...+.|+-|.++||+..
T Consensus 8 ~~~~~l~~L~~MGF~d~ 24 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNR 24 (54)
T ss_dssp SSHHHHHHHHHHTCCCH
T ss_pred hHHHHHHHHHHcCCCcH
Confidence 34445555555555443
No 62
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=26.26 E-value=1.4e+02 Score=24.78 Aligned_cols=70 Identities=13% Similarity=-0.045 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHh-hcCCChHHHh--------hCCCceecCCCCccchHHHHHHHHHHCCCCCCCccccccccccChhhH
Q 048223 185 EDKITAIMDFFVN-GMGWEPAVIA--------KHPALTTFSMEKRIIPRGAVIQFLLSKGLVKSDTTYLTTLLSYPEKTF 255 (286)
Q Consensus 185 ~~~l~~k~~fl~~-~~g~~~~~i~--------~~P~~L~~Sle~~i~pR~~vl~~L~~~G~~~~~~~~l~~~l~~se~~F 255 (286)
.+.++.-+..+.+ -||++.+++. .+|.+..-++....--|+ .-+++...|+. +.+ +.+++..+-+|+
T Consensus 47 p~~v~~iy~~~l~~~~g~~~e~~~~~~~~~~~~~pel~~~si~~l~~~r~-l~~~l~~~gv~--DFt-l~DL~kP~~~Rt 122 (250)
T 2ve7_C 47 PEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFSNLVTH-LDSFLPICRVN--DFE-TADILCPKAKRT 122 (250)
T ss_dssp HHHHHHHHHHHHHHHHCCCSGGGSCCCSSCCCSCGGGGTTTHHHHHHHHH-HHHHHHHTTCC--CCC-HHHHHSCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHhccchhhcccChhhHHHHHHHHHHHHH-HHHHHHHcCCC--CCc-HhHhcCCchHHH
Confidence 4556665555554 6677766653 233333333332222232 23566778884 677 888888887766
Q ss_pred HHH
Q 048223 256 MLR 258 (286)
Q Consensus 256 ~~~ 258 (286)
..-
T Consensus 123 ~~i 125 (250)
T 2ve7_C 123 SRF 125 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 63
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=25.80 E-value=1e+02 Score=21.70 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCHHHHHHHhhc
Q 048223 155 SKLHVYKKWGWSEQEWLAAFLK 176 (286)
Q Consensus 155 ~~v~~l~~lG~s~~~i~~~i~~ 176 (286)
..|..++++|++-++|..++..
T Consensus 49 ~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 49 QQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTC
T ss_pred HHHHHHHHCCCCHHHHHHHHhC
Confidence 4667788999999999998863
No 64
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.78 E-value=60 Score=22.23 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcC
Q 048223 155 SKLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMG 200 (286)
Q Consensus 155 ~~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g 200 (286)
..|+-|.++||+++.+.+.+... ....++.-++||...+.
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t------~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 31 EIVAQLVSMGFSQLHCQKAAINT------SNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT------TTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH------cCCCHHHHHHHHHhCCC
Confidence 45677889999998888776522 11257778889888543
No 65
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.35 E-value=33 Score=23.01 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=8.1
Q ss_pred HHHHHHHHHHcCCC
Q 048223 153 WESKLHVYKKWGWS 166 (286)
Q Consensus 153 l~~~v~~l~~lG~s 166 (286)
.+++|+-|.++||+
T Consensus 29 ye~qi~qL~eMGF~ 42 (74)
T 1vej_A 29 YQQELEELKALGFA 42 (74)
T ss_dssp SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 44556666666663
No 66
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=24.33 E-value=1e+02 Score=19.43 Aligned_cols=23 Identities=17% Similarity=-0.047 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhc
Q 048223 154 ESKLHVYKKWGWSEQEWLAAFLK 176 (286)
Q Consensus 154 ~~~v~~l~~lG~s~~~i~~~i~~ 176 (286)
..-|.-.+++|++.+||...+..
T Consensus 16 l~LI~~Ak~lGlsleEIrefL~l 38 (57)
T 1b0n_B 16 VELMVEAKEANISPEEIRKYLLL 38 (57)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 33444456899999999988753
No 67
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=23.51 E-value=2.6e+02 Score=21.64 Aligned_cols=134 Identities=10% Similarity=0.006 Sum_probs=75.2
Q ss_pred HHHHhhCCCChhhHHHHHhhCCCceeccccCcchhHHHHhHhhhc-CchHHHHHHHhCCccc-ccCcchhhhhHHHHHHh
Q 048223 16 LEFFHCEGISNPDTVKILSKYPGLLSRSLDNHLIPTFNSLSHLLH-SSEKTIALIIRFPYIL-YHDADYYLLPNVKILRD 93 (286)
Q Consensus 16 l~fL~~~G~~~~~i~~i~~~~P~il~~~~~~~l~~~~~~L~~~g~-~~~~i~~ii~~~P~iL-~~s~e~~l~~~v~~L~~ 93 (286)
+.+|..-.-|..++..-+.+. +.+ +..+...++.|.+.|. ++........+.-.-- ..+.. ....-|+.
T Consensus 25 l~~Ls~r~~S~~EL~~KL~~k----g~~-~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~----~I~~eL~~ 95 (177)
T 3e3v_A 25 LNYLSYQLRTRKEVEDKLRSL----DIH-EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPK----VIKLNLSK 95 (177)
T ss_dssp HHHHHSSCCCHHHHHTTSGGG----TCC-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHH----HHHHHHHT
T ss_pred HHHhccccccHHHHHHHHHHc----CCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHH----HHHHHHHH
Confidence 445555566777776655543 223 2367788899999885 6666665554432111 13322 22345888
Q ss_pred cCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCHHHHHH
Q 048223 94 SGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLRLKFVLAIQAKCIMSESQW-ESKLHVYKKWGWSEQEWLA 172 (286)
Q Consensus 94 ~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~~~~~~~~~~l~~~~~~~l-~~~v~~l~~lG~s~~~i~~ 172 (286)
.|++.+.|..++...+ ..+........++. ........+.... +..+.||..-||+.+.|..
T Consensus 96 KGI~~~~I~~al~~~~-----~~de~e~a~~l~~K------------k~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~ 158 (177)
T 3e3v_A 96 KGIDDNIAEDALILYT-----DKLQVEKGVTLAEK------------LANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDT 158 (177)
T ss_dssp TTCCHHHHHHHHTTSC-----HHHHHHHHHHHHHH------------HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCCHHHHHHHHHhCC-----chhHHHHHHHHHHH------------HHhhccCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999988886432 11112222222211 0111111123333 3445689999999999988
Q ss_pred Hhh
Q 048223 173 AFL 175 (286)
Q Consensus 173 ~i~ 175 (286)
++.
T Consensus 159 vl~ 161 (177)
T 3e3v_A 159 IIQ 161 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 68
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.89 E-value=59 Score=20.91 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcC
Q 048223 156 KLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMG 200 (286)
Q Consensus 156 ~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g 200 (286)
.|+-|.++||+++++.+.++.+ ....++.-++||...+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t------~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALT------GNQGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH------TSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHh------cCCCHHHHHHHHHhCCC
Confidence 5677889999999888876622 12357788889887543
No 69
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.32 E-value=71 Score=20.96 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHH-HHHhhcCCccccccHHHHHHHHHHHHh
Q 048223 150 ESQWESKLHVYKKWGWSEQEW-LAAFLKCPWCMITSEDKITAIMDFFVN 197 (286)
Q Consensus 150 ~~~l~~~v~~l~~lG~s~~~i-~~~i~~~P~il~~s~~~l~~k~~fl~~ 197 (286)
++.+...++-|.++||+..+. .+.+ ...-..+..-++||.+
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL-------~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQAL-------IATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHH-------HHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHH-------HHcCCCHHHHHHHHHh
Confidence 344556666666666654432 2222 1223345555666554
No 70
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.23 E-value=21 Score=27.74 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 048223 149 SESQWESKLHVYKKWGWSEQEWLAAFLKC 177 (286)
Q Consensus 149 ~~~~l~~~v~~l~~lG~s~~~i~~~i~~~ 177 (286)
+.+.+++.|--|.+-|++.++|+.+++..
T Consensus 29 ~~eev~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 29 TVEEIENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 44555555555555566666665555433
No 71
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=22.21 E-value=60 Score=21.56 Aligned_cols=22 Identities=18% Similarity=-0.031 Sum_probs=10.7
Q ss_pred HHHHhH-hhhcCchHHHHHHHhC
Q 048223 51 TFNSLS-HLLHSSEKTIALIIRF 72 (286)
Q Consensus 51 ~~~~L~-~~g~~~~~i~~ii~~~ 72 (286)
.+..|+ +.|++-++|..++...
T Consensus 55 ~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 55 RVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp HHHHHHHHTSTHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHcc
Confidence 344444 5555555555555443
No 72
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=21.52 E-value=2.8e+02 Score=22.95 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=34.9
Q ss_pred eeecCcccHHHHHHHHhhCC---CChhhHHHHHhhC---C-C--ceeccc--cCcchhHHHHhHhhhcC
Q 048223 4 VLLLSPETLLRKLEFFHCEG---ISNPDTVKILSKY---P-G--LLSRSL--DNHLIPTFNSLSHLLHS 61 (286)
Q Consensus 4 lL~~~~~~l~~~l~fL~~~G---~~~~~i~~i~~~~---P-~--il~~~~--~~~l~~~~~~L~~~g~~ 61 (286)
.+..+++.++.-+++|++.| ++.+++...+... | . .|+.|= ..+....+..|++.|+.
T Consensus 25 ~~~v~~~~f~~ql~~L~~~gy~~vs~~~~~~~~~~~~~~~~~~v~lTfDDg~~~~~~~~~~~l~~~~~~ 93 (268)
T 3vus_A 25 FMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWP 93 (268)
T ss_dssp GTCEEHHHHHHHHHHHHHTTCEECCHHHHHHHHTTSSCCCTTEEEEEEEETBHHHHHHHHHHHHHHTCC
T ss_pred cceeCHHHHHHHHHHHHHCCCEEecHHHHHHHHhcCCCCCCCEEEEEEeCCchhHHHHHHHHHHHcCCC
Confidence 34556668999999999988 6667776665443 1 2 344431 11233345667776654
No 73
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=21.39 E-value=86 Score=25.05 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 048223 150 ESQWESKLHVYKKWGWSEQEWLAAFLKC 177 (286)
Q Consensus 150 ~~~l~~~v~~l~~lG~s~~~i~~~i~~~ 177 (286)
....+++|+-|.++||+++++...+.++
T Consensus 160 ~~~~eekV~~l~~MGf~~~~a~~AL~~~ 187 (201)
T 3k9o_A 160 SPEYTKKIENLCAMGFDRNAVIVALSSK 187 (201)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3456788888999999998888877655
No 74
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.30 E-value=2.9e+02 Score=21.36 Aligned_cols=84 Identities=8% Similarity=0.059 Sum_probs=51.5
Q ss_pred hHHHHHHhcCCCchhHhhhhccCCeeEEecchhHHHHHHHHHHcCCCCcc---hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048223 86 PNVKILRDSGVPESDIIKSIESWPKLFLRHPKFFEKNVASVKEMGINPLR---LKFVLAIQAKCIMSESQWESKLHVYKK 162 (286)
Q Consensus 86 ~~v~~L~~~G~~~~~i~~~i~~~P~ll~~~~~~l~~~v~~l~~lG~~~~~---~~~~~~~~~l~~~~~~~l~~~v~~l~~ 162 (286)
..+.+|..-.-|..++..-+... +.+++.+...++.|.+.|+-.+. ..++..-......+...+.. -|+.
T Consensus 23 ~Al~~Ls~r~~S~~EL~~KL~~k----g~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~---eL~~ 95 (177)
T 3e3v_A 23 AALNYLSYQLRTRKEVEDKLRSL----DIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKL---NLSK 95 (177)
T ss_dssp HHHHHHHSSCCCHHHHHTTSGGG----TCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHH---HHHT
T ss_pred HHHHHhccccccHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHH---HHHH
Confidence 34455555667777776665543 34566789999999999986543 22332211112234444433 3578
Q ss_pred cCCCHHHHHHHhhc
Q 048223 163 WGWSEQEWLAAFLK 176 (286)
Q Consensus 163 lG~s~~~i~~~i~~ 176 (286)
-|++.+.|...+..
T Consensus 96 KGI~~~~I~~al~~ 109 (177)
T 3e3v_A 96 KGIDDNIAEDALIL 109 (177)
T ss_dssp TTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHh
Confidence 89999988887753
No 75
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.21 E-value=77 Score=20.40 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCccccccHHHHHHHHHHHHhhcC
Q 048223 156 KLHVYKKWGWSEQEWLAAFLKCPWCMITSEDKITAIMDFFVNGMG 200 (286)
Q Consensus 156 ~v~~l~~lG~s~~~i~~~i~~~P~il~~s~~~l~~k~~fl~~~~g 200 (286)
.|+.|.++||+++.+.+.+... ....++.-++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t------~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAAT------GRKTAEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHH------TSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHh------CCCCHHHHHHHHHhCCC
Confidence 4677889999998888776522 12367888899988553
Done!