Query 048224
Match_columns 220
No_of_seqs 219 out of 1266
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 99.9 7.5E-27 2.6E-31 180.0 4.7 84 1-89 18-101 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 99.9 2E-26 7E-31 176.3 5.2 83 1-88 21-103 (105)
3 3zqc_A MYB3; transcription-DNA 99.9 4.4E-26 1.5E-30 181.4 7.0 88 1-93 19-106 (131)
4 3osg_A MYB21; transcription-DN 99.9 1.3E-25 4.3E-30 177.9 5.2 85 1-91 28-112 (126)
5 1h8a_C AMV V-MYB, MYB transfor 99.9 3.2E-25 1.1E-29 175.5 5.7 83 1-88 44-126 (128)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 1.1E-23 3.8E-28 172.0 4.9 83 1-88 75-157 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 2.1E-23 7.2E-28 170.4 4.6 82 1-86 23-104 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.8 5.1E-21 1.8E-25 151.3 3.7 73 10-86 1-73 (128)
9 2llk_A Cyclin-D-binding MYB-li 99.6 6.7E-17 2.3E-21 117.8 2.8 58 24-87 10-67 (73)
10 2dim_A Cell division cycle 5-l 99.6 1.5E-16 5.1E-21 113.9 1.4 44 1-45 26-69 (70)
11 2din_A Cell division cycle 5-l 99.5 2.5E-15 8.4E-20 106.3 2.4 58 29-91 1-58 (66)
12 2cu7_A KIAA1915 protein; nucle 99.5 1.5E-14 5.1E-19 104.1 4.5 55 31-89 3-57 (72)
13 2d9a_A B-MYB, MYB-related prot 99.4 5.6E-14 1.9E-18 97.5 3.1 53 32-87 3-55 (60)
14 1gvd_A MYB proto-oncogene prot 99.4 1.2E-13 4.2E-18 93.2 3.3 49 35-86 1-49 (52)
15 1guu_A C-MYB, MYB proto-oncoge 99.4 1.4E-13 4.8E-18 92.8 3.0 49 35-86 1-49 (52)
16 1x41_A Transcriptional adaptor 99.4 1.7E-13 5.9E-18 95.4 3.0 54 32-88 3-56 (60)
17 2dim_A Cell division cycle 5-l 99.4 2.9E-13 1E-17 96.6 3.4 53 32-87 4-56 (70)
18 1ity_A TRF1; helix-turn-helix, 99.3 6.4E-13 2.2E-17 94.7 4.5 58 29-89 2-61 (69)
19 2ltp_A Nuclear receptor corepr 99.0 1.2E-13 4E-18 103.6 0.0 56 29-88 8-63 (89)
20 1w0t_A Telomeric repeat bindin 99.3 7.8E-13 2.7E-17 89.7 3.1 48 36-86 1-50 (53)
21 2yum_A ZZZ3 protein, zinc fing 99.3 6.4E-13 2.2E-17 96.0 2.1 53 32-88 3-61 (75)
22 2roh_A RTBP1, telomere binding 99.3 2.1E-12 7.2E-17 102.4 4.1 59 1-59 48-115 (122)
23 1ign_A Protein (RAP1); RAP1,ye 99.3 1.6E-12 5.5E-17 113.3 3.7 49 5-54 34-111 (246)
24 2elk_A SPCC24B10.08C protein; 99.2 2.5E-12 8.7E-17 89.0 2.9 52 31-85 3-55 (58)
25 2juh_A Telomere binding protei 99.2 1.2E-12 4.1E-17 103.7 1.2 61 1-65 34-103 (121)
26 3sjm_A Telomeric repeat-bindin 99.2 7.6E-12 2.6E-16 88.5 3.1 48 35-85 9-58 (64)
27 2cqr_A RSGI RUH-043, DNAJ homo 99.1 1.5E-11 5E-16 89.4 2.4 54 32-85 13-66 (73)
28 1gv2_A C-MYB, MYB proto-oncoge 99.1 4.6E-11 1.6E-15 90.7 4.0 50 34-86 1-50 (105)
29 1ity_A TRF1; helix-turn-helix, 99.1 2.3E-11 7.9E-16 86.6 1.8 41 1-41 27-68 (69)
30 2d9a_A B-MYB, MYB-related prot 99.1 4E-11 1.4E-15 82.9 2.7 35 1-36 25-59 (60)
31 1gvd_A MYB proto-oncogene prot 99.1 3.7E-11 1.3E-15 80.9 1.8 33 1-34 20-52 (52)
32 3osg_A MYB21; transcription-DN 99.0 1.3E-10 4.4E-15 91.5 3.8 53 31-87 5-57 (126)
33 1guu_A C-MYB, MYB proto-oncoge 99.0 6.1E-11 2.1E-15 79.7 1.7 33 1-34 20-52 (52)
34 2yus_A SWI/SNF-related matrix- 99.0 1.3E-10 4.3E-15 85.5 2.2 47 34-84 15-61 (79)
35 1x58_A Hypothetical protein 49 99.0 3.5E-10 1.2E-14 79.8 3.8 51 35-90 6-59 (62)
36 2aje_A Telomere repeat-binding 98.9 7E-10 2.4E-14 85.8 5.3 60 32-95 8-71 (105)
37 2k9n_A MYB24; R2R3 domain, DNA 98.9 3.9E-10 1.3E-14 86.3 3.2 47 37-86 1-47 (107)
38 3sjm_A Telomeric repeat-bindin 98.9 2.6E-10 8.8E-15 80.6 1.4 36 1-36 28-64 (64)
39 1ign_A Protein (RAP1); RAP1,ye 98.9 3.4E-10 1.2E-14 98.7 2.3 57 33-89 4-62 (246)
40 3zqc_A MYB3; transcription-DNA 98.9 6E-10 2E-14 88.1 3.4 48 37-87 2-49 (131)
41 2juh_A Telomere binding protei 98.9 7.2E-10 2.5E-14 87.7 3.7 61 31-95 11-75 (121)
42 2ckx_A NGTRF1, telomere bindin 98.9 5.6E-10 1.9E-14 82.9 2.4 53 38-94 1-57 (83)
43 1x41_A Transcriptional adaptor 98.8 1.3E-09 4.5E-14 75.6 2.4 34 1-35 25-58 (60)
44 3hm5_A DNA methyltransferase 1 98.8 9.6E-10 3.3E-14 83.4 1.7 68 21-96 18-90 (93)
45 2cjj_A Radialis; plant develop 98.8 1.9E-09 6.6E-14 81.6 2.9 51 36-86 7-57 (93)
46 2ckx_A NGTRF1, telomere bindin 98.8 3.7E-09 1.3E-13 78.5 4.1 53 1-54 17-79 (83)
47 2roh_A RTBP1, telomere binding 98.8 4.1E-09 1.4E-13 83.5 3.8 60 32-95 26-89 (122)
48 2elk_A SPCC24B10.08C protein; 98.7 3E-09 1E-13 73.4 1.9 31 1-31 26-56 (58)
49 1w0t_A Telomeric repeat bindin 98.7 4.7E-09 1.6E-13 70.9 1.6 32 1-32 19-51 (53)
50 2eqr_A N-COR1, N-COR, nuclear 98.6 1.1E-08 3.8E-13 71.3 2.6 44 36-83 11-54 (61)
51 2yum_A ZZZ3 protein, zinc fing 98.6 4.9E-09 1.7E-13 75.4 0.8 39 1-40 25-68 (75)
52 2din_A Cell division cycle 5-l 98.6 4.1E-09 1.4E-13 74.1 -1.1 36 1-39 26-61 (66)
53 2aje_A Telomere repeat-binding 98.6 2.7E-08 9.1E-13 76.9 2.9 58 1-58 30-96 (105)
54 2cu7_A KIAA1915 protein; nucle 98.4 4.3E-08 1.5E-12 70.1 0.3 35 1-37 26-60 (72)
55 2cqq_A RSGI RUH-037, DNAJ homo 98.3 2.9E-07 9.9E-12 66.5 3.8 55 33-89 4-58 (72)
56 2yus_A SWI/SNF-related matrix- 98.2 5.5E-07 1.9E-11 66.0 1.7 28 1-30 35-62 (79)
57 1wgx_A KIAA1903 protein; MYB D 98.0 4.7E-06 1.6E-10 60.4 4.3 49 37-85 8-56 (73)
58 2ltp_A Nuclear receptor corepr 97.2 9.7E-07 3.3E-11 65.7 0.0 31 1-33 33-63 (89)
59 2iw5_B Protein corest, REST co 98.0 2.6E-06 8.7E-11 73.8 2.3 45 36-84 132-176 (235)
60 2cqr_A RSGI RUH-043, DNAJ homo 97.9 2.2E-06 7.7E-11 61.9 0.8 30 2-32 36-68 (73)
61 2llk_A Cyclin-D-binding MYB-li 97.6 1.6E-05 5.4E-10 57.5 2.0 34 1-38 40-73 (73)
62 2yqk_A Arginine-glutamic acid 97.5 6.1E-05 2.1E-09 52.6 3.3 48 32-83 4-52 (63)
63 1fex_A TRF2-interacting telome 97.5 5.2E-05 1.8E-09 52.5 2.4 46 37-85 2-56 (59)
64 2cjj_A Radialis; plant develop 97.4 4.1E-05 1.4E-09 57.7 1.6 27 4-31 31-57 (93)
65 2lr8_A CAsp8-associated protei 96.4 3.1E-05 1.1E-09 55.4 0.0 46 39-86 16-61 (70)
66 4eef_G F-HB80.4, designed hema 97.3 3.6E-05 1.2E-09 55.8 0.1 46 37-82 20-65 (74)
67 1ug2_A 2610100B20RIK gene prod 97.3 7.5E-05 2.6E-09 56.2 1.7 48 39-87 35-82 (95)
68 4iej_A DNA methyltransferase 1 97.0 0.00022 7.5E-09 53.9 2.1 58 25-90 22-84 (93)
69 2eqr_A N-COR1, N-COR, nuclear 96.7 0.00068 2.3E-08 46.7 2.1 29 1-31 29-57 (61)
70 4a69_C Nuclear receptor corepr 96.6 0.00089 3E-08 50.3 2.4 43 37-83 43-85 (94)
71 2crg_A Metastasis associated p 96.4 0.0028 9.6E-08 45.0 3.9 43 37-83 8-51 (70)
72 1wgx_A KIAA1903 protein; MYB D 95.5 0.0078 2.7E-07 43.4 2.7 28 4-32 31-58 (73)
73 2xag_B REST corepressor 1; ami 95.2 0.0073 2.5E-07 57.3 2.4 40 37-80 380-419 (482)
74 1fex_A TRF2-interacting telome 95.1 0.0064 2.2E-07 41.8 1.2 29 3-32 29-58 (59)
75 2iw5_B Protein corest, REST co 95.1 0.0063 2.2E-07 52.7 1.5 30 1-32 150-179 (235)
76 2cqq_A RSGI RUH-037, DNAJ homo 93.5 0.023 7.8E-07 40.6 1.2 26 4-31 31-56 (72)
77 1ofc_X ISWI protein; nuclear p 92.7 0.11 3.8E-06 46.5 4.7 76 1-77 127-264 (304)
78 2ebi_A DNA binding protein GT- 92.4 0.046 1.6E-06 39.5 1.6 26 6-31 35-63 (86)
79 2ebi_A DNA binding protein GT- 92.4 0.057 1.9E-06 39.0 2.0 52 37-88 4-65 (86)
80 1x58_A Hypothetical protein 49 91.6 0.05 1.7E-06 38.0 0.9 30 1-32 25-57 (62)
81 4eef_G F-HB80.4, designed hema 88.3 0.22 7.5E-06 35.9 2.0 24 4-28 43-66 (74)
82 4b4c_A Chromodomain-helicase-D 85.6 0.9 3.1E-05 37.3 4.7 28 38-68 135-162 (211)
83 2xag_B REST corepressor 1; ami 82.7 0.25 8.4E-06 46.9 0.0 41 38-82 190-230 (482)
84 2xb0_X Chromo domain-containin 80.2 1.3 4.5E-05 38.9 3.7 28 38-68 169-196 (270)
85 2yqk_A Arginine-glutamic acid 79.1 0.83 2.8E-05 31.2 1.7 27 1-29 26-53 (63)
86 4a69_C Nuclear receptor corepr 76.4 1.5 5E-05 32.5 2.5 25 2-28 61-85 (94)
87 1ofc_X ISWI protein; nuclear p 74.0 3.3 0.00011 36.9 4.6 37 38-77 111-147 (304)
88 2crg_A Metastasis associated p 72.3 1.7 5.7E-05 30.4 1.8 27 1-29 25-52 (70)
89 1irz_A ARR10-B; helix-turn-hel 64.3 10 0.00034 26.3 4.4 43 34-77 4-48 (64)
90 4b4c_A Chromodomain-helicase-D 59.7 5.7 0.00019 32.4 2.9 41 34-77 4-48 (211)
91 2y9y_A Imitation switch protei 51.4 13 0.00045 34.0 4.1 39 36-77 227-280 (374)
92 3cz6_A DNA-binding protein RAP 43.1 21 0.0007 29.3 3.6 35 22-56 98-141 (168)
93 1ug2_A 2610100B20RIK gene prod 40.1 16 0.00054 27.3 2.3 24 5-29 56-79 (95)
94 2li6_A SWI/SNF chromatin-remod 34.8 12 0.00042 28.1 1.0 28 5-33 71-98 (116)
95 2rq5_A Protein jumonji; develo 30.1 22 0.00076 27.2 1.8 46 5-53 64-113 (121)
96 1ig6_A MRF-2, modulator recogn 28.7 21 0.00073 26.2 1.4 30 5-34 55-88 (107)
97 2jrz_A Histone demethylase jar 28.5 22 0.00076 26.7 1.5 29 5-33 62-93 (117)
98 2xb0_X Chromo domain-containin 27.4 52 0.0018 28.6 3.9 37 37-77 3-44 (270)
99 1c20_A DEAD ringer protein; DN 27.2 21 0.00072 27.2 1.2 29 5-33 74-106 (128)
100 2cxy_A BAF250B subunit, HBAF25 25.6 23 0.00079 26.9 1.2 29 5-33 73-104 (125)
101 2lm1_A Lysine-specific demethy 25.2 24 0.00083 25.8 1.2 29 5-33 66-97 (107)
102 2jxj_A Histone demethylase jar 23.0 26 0.00088 25.2 0.9 29 5-33 58-89 (96)
103 1kkx_A Transcription regulator 21.3 21 0.00072 27.3 0.1 28 5-33 70-97 (123)
104 2eqy_A RBP2 like, jumonji, at 20.6 35 0.0012 25.8 1.3 29 5-33 64-95 (122)
105 2kk0_A AT-rich interactive dom 20.4 74 0.0025 24.7 3.2 43 5-47 86-134 (145)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.93 E-value=7.5e-27 Score=180.02 Aligned_cols=84 Identities=23% Similarity=0.425 Sum_probs=77.4
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCccc
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLK 80 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k 80 (220)
+||.++|..||..|+ +|+++|||+||.+||+|.+++++||+|||.+|+++|.+||++ |+.||++|||||++++++
T Consensus 18 ~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~----W~~Ia~~l~gRt~~~~k~ 92 (107)
T 2k9n_A 18 RYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPK----WNKISKFLKNRSDNNIRN 92 (107)
T ss_dssp HHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSC----HHHHHHHHSSSCHHHHHH
T ss_pred HHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcC----HHHHHHHCCCCCHHHHHH
Confidence 489899999999999 999999999999999999999999999999999999999998 999999999999998876
Q ss_pred chhhhhhhc
Q 048224 81 PEAPKIAKH 89 (220)
Q Consensus 81 ~~~~~~~k~ 89 (220)
++...+.+.
T Consensus 93 rw~~l~r~~ 101 (107)
T 2k9n_A 93 RWMMIARHR 101 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhH
Confidence 666555443
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.92 E-value=2e-26 Score=176.30 Aligned_cols=83 Identities=35% Similarity=0.661 Sum_probs=76.1
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCccc
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLK 80 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k 80 (220)
+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|++||++ |+.||++|||||++++++
T Consensus 21 ~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~----W~~Ia~~l~gRt~~~~k~ 95 (105)
T 1gv2_A 21 KYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR----WAEIAKLLPGRTDNAIKN 95 (105)
T ss_dssp HHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSC----HHHHHTTCTTCCHHHHHH
T ss_pred HhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHH
Confidence 489889999999998 999999999999999999999999999999999999999999 999999999999998866
Q ss_pred chhhhhhh
Q 048224 81 PEAPKIAK 88 (220)
Q Consensus 81 ~~~~~~~k 88 (220)
++...+.+
T Consensus 96 rw~~~~~~ 103 (105)
T 1gv2_A 96 HWNSTMRR 103 (105)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHhc
Confidence 66554443
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.92 E-value=4.4e-26 Score=181.45 Aligned_cols=88 Identities=31% Similarity=0.537 Sum_probs=80.4
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCccc
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLK 80 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k 80 (220)
+||.++|..||..|+ +|+++|||+||.+||+|.+++++||+|||.+|+++|.+||.+ |+.||++|||||++++++
T Consensus 19 ~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~----W~~Ia~~l~gRt~~~~k~ 93 (131)
T 3zqc_A 19 ENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSK----WSVIAKLIPGRTDNAIKN 93 (131)
T ss_dssp HHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSC----HHHHTTTSTTCCHHHHHH
T ss_pred HhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHH
Confidence 489899999999998 999999999999999999999999999999999999999999 999999999999998877
Q ss_pred chhhhhhhccCCC
Q 048224 81 PEAPKIAKHNVIK 93 (220)
Q Consensus 81 ~~~~~~~k~~~~k 93 (220)
++...+.+.....
T Consensus 94 rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 94 RWNSSISKRISTN 106 (131)
T ss_dssp HHHHTTGGGCCCC
T ss_pred HHHHHHHHHhhcC
Confidence 7777666654433
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.91 E-value=1.3e-25 Score=177.87 Aligned_cols=85 Identities=29% Similarity=0.541 Sum_probs=77.6
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCccc
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLK 80 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k 80 (220)
+||. +|..||..|+ +|+++|||+||.+||+|.+++++||+|||++|+++|++||.+ |+.||+.|||||++++++
T Consensus 28 ~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~----W~~Ia~~l~gRt~~~~k~ 101 (126)
T 3osg_A 28 QHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ----WAIIAKFFPGRTDIHIKN 101 (126)
T ss_dssp HHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC----HHHHHTTSTTCCHHHHHH
T ss_pred HhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHH
Confidence 3787 9999999998 999999999999999999999999999999999999999999 999999999999998877
Q ss_pred chhhhhhhccC
Q 048224 81 PEAPKIAKHNV 91 (220)
Q Consensus 81 ~~~~~~~k~~~ 91 (220)
++...+.+...
T Consensus 102 rw~~l~~k~~~ 112 (126)
T 3osg_A 102 RWVTISNKLGI 112 (126)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhcCC
Confidence 76665555443
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.91 E-value=3.2e-25 Score=175.46 Aligned_cols=83 Identities=35% Similarity=0.672 Sum_probs=76.4
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCccc
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLK 80 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k 80 (220)
+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|++||++ |+.||++|||||++++++
T Consensus 44 ~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~----W~~Ia~~l~gRt~~~~k~ 118 (128)
T 1h8a_C 44 KYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR----WAEIAKLLPGRTDNAVKN 118 (128)
T ss_dssp HTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC----HHHHGGGSTTCCHHHHHH
T ss_pred HHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC----HHHHHHHCCCCCHHHHHH
Confidence 489989999999999 999999999999999999999999999999999999999999 999999999999998866
Q ss_pred chhhhhhh
Q 048224 81 PEAPKIAK 88 (220)
Q Consensus 81 ~~~~~~~k 88 (220)
++...+.+
T Consensus 119 r~~~~~~~ 126 (128)
T 1h8a_C 119 HWNSTMRR 126 (128)
T ss_dssp HHHTTTTC
T ss_pred HHHHHHhc
Confidence 66544443
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.88 E-value=1.1e-23 Score=172.04 Aligned_cols=83 Identities=35% Similarity=0.661 Sum_probs=75.8
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCccc
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLK 80 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k 80 (220)
+||.++|..||..|+ +|+++||++||.+||+|.+++++||+|||.+|+++|++||++ |+.||++|||||++++++
T Consensus 75 ~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~----W~~Ia~~l~gRt~~~~kn 149 (159)
T 1h89_C 75 KYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR----WAEIAKLLPGRTDNAIKN 149 (159)
T ss_dssp HHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC----HHHHHTTSTTCCHHHHHH
T ss_pred HhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC----HHHHHHHCCCCCHHHHHH
Confidence 378889999999998 999999999999999999999999999999999999999999 999999999999998766
Q ss_pred chhhhhhh
Q 048224 81 PEAPKIAK 88 (220)
Q Consensus 81 ~~~~~~~k 88 (220)
++...+.+
T Consensus 150 r~~~~~r~ 157 (159)
T 1h89_C 150 HWNSTMRR 157 (159)
T ss_dssp HHHTTTCC
T ss_pred HHHHHHhc
Confidence 65544433
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.87 E-value=2.1e-23 Score=170.38 Aligned_cols=82 Identities=26% Similarity=0.524 Sum_probs=57.3
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCccc
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLK 80 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k 80 (220)
+||.++|..||..|+ +|+++||++||.+||+|.+++++||+|||++|+++|++||.++ |+.||..|||||+++++.
T Consensus 23 ~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~---W~~Ia~~l~~Rt~~qcr~ 98 (159)
T 1h89_C 23 QNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKR---WSVIAKHLKGRIGKQCRE 98 (159)
T ss_dssp ---------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCC---HHHHHHTSTTCCHHHHHH
T ss_pred HhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCccc---HHHHHHHcCCCCHHHHHH
Confidence 589999999999998 9999999999999999999999999999999999999999754 999999999999998877
Q ss_pred chhhhh
Q 048224 81 PEAPKI 86 (220)
Q Consensus 81 ~~~~~~ 86 (220)
++...+
T Consensus 99 Rw~~~l 104 (159)
T 1h89_C 99 RWHNHL 104 (159)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 666544
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.81 E-value=5.1e-21 Score=151.27 Aligned_cols=73 Identities=25% Similarity=0.456 Sum_probs=47.3
Q ss_pred HhhhcCCCCCHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhh
Q 048224 10 VPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKI 86 (220)
Q Consensus 10 Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~ 86 (220)
||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||.++ |..||..|||||+.+++.++...+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~---W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKR---WSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCC---HHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHhcCCcHHHHHHHHHHhc
Confidence 788888 9999999999999999999999999999999999999999755 999999999999998877666544
No 9
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.63 E-value=6.7e-17 Score=117.77 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=44.2
Q ss_pred HHHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhh
Q 048224 24 RLRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIA 87 (220)
Q Consensus 24 r~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~ 87 (220)
.-||.+||+|++++++||+|||++|+++|++||++ |+.||+.| |||++++++++ ..+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l-gRt~~q~knRw-~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL-GRSASSVKDRC-RLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH-TSCHHHHHHHH-HHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh-CCCHHHHHHHH-HHHH
Confidence 35899999999999999999999999999999999 99999999 99999775554 4443
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-16 Score=113.87 Aligned_cols=44 Identities=27% Similarity=0.736 Sum_probs=42.4
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCCCCCCHHHH
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFVADEI 45 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~WT~eED 45 (220)
+||.++|..||..|+ +|+++|||+||.+||+|.|++++||+|||
T Consensus 26 ~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 26 KYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp HTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred HHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 489899999999999 99999999999999999999999999997
No 11
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.5e-15 Score=106.34 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=51.7
Q ss_pred hccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhhhccC
Q 048224 29 NYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIAKHNV 91 (220)
Q Consensus 29 n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~k~~~ 91 (220)
.||+|.+++++||+|||++|+++|++||.+ |+.||. |||||++||+.++...+.....
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~----W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQ----WRTIAP-IIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTC----HHHHHH-HHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCC----HHHHhc-ccCcCHHHHHHHHHHHhChHhc
Confidence 389999999999999999999999999998 999999 9999999987777776655433
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=1.5e-14 Score=104.11 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=49.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhhhc
Q 048224 31 LKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIAKH 89 (220)
Q Consensus 31 L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~k~ 89 (220)
++|.+++++||+|||++|+++|++||++ |..||.+|||||++|+++++...+.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSC----HHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998 999999999999998877776666554
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=5.6e-14 Score=97.46 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=46.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhh
Q 048224 32 KPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIA 87 (220)
Q Consensus 32 ~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~ 87 (220)
+|.+++++||+|||++|+++|++||.++ |+.||.+|||||+.|++.++...+.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~---W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQD---WKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTC---HHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHccCCCHHHHHHHHHHHcC
Confidence 5899999999999999999999999533 9999999999999988766665443
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.39 E-value=1.2e-13 Score=93.16 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhh
Q 048224 35 IKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKI 86 (220)
Q Consensus 35 i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~ 86 (220)
|++++||+|||++|+++|++||.++ |+.||..|||||++|++.++...+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~---W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKR---WSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTC---HHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCh---HHHHHHHcCCCCHHHHHHHHHHHc
Confidence 6799999999999999999999855 999999999999998877665543
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.38 E-value=1.4e-13 Score=92.78 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhh
Q 048224 35 IKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKI 86 (220)
Q Consensus 35 i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~ 86 (220)
|++++||+|||++|+++|++||..+ |+.||..|||||+.|++.++.+.+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~---W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDD---WKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSC---HHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHcCCCCHHHHHHHHHHHc
Confidence 5799999999999999999999944 999999999999998877665544
No 16
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=1.7e-13 Score=95.38 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=47.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhhh
Q 048224 32 KPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIAK 88 (220)
Q Consensus 32 ~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~k 88 (220)
.|.+.+++||+|||++|+++|++||.++ |..||.+|||||+.|++.++.+.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~---W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGN---WQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTC---HHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCc---HHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 5789999999999999999999999533 99999999999999987777665543
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.9e-13 Score=96.62 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=46.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhh
Q 048224 32 KPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIA 87 (220)
Q Consensus 32 ~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~ 87 (220)
.|.+++++||+|||++|+++|++||..+ |..||..|||||+.||+.++...+.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~---W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQ---WSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSC---HHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCC---HHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 5889999999999999999999999543 9999999999999988777766554
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.34 E-value=6.4e-13 Score=94.69 Aligned_cols=58 Identities=17% Similarity=0.044 Sum_probs=48.5
Q ss_pred hccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCC--CCCCCCcccchhhhhhhc
Q 048224 29 NYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLP--GRTSNDKLKPEAPKIAKH 89 (220)
Q Consensus 29 n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lp--gRT~n~~~k~~~~~~~k~ 89 (220)
+..+|..++++||+|||++|+++|++||.++ |+.||..|| |||++|++.++...+...
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGN---WSKILLHYKFNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSC---HHHHHHHSCCSSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCc---HHHHHHHcCcCCCCHHHHHHHHHHHcCCC
Confidence 3567889999999999999999999999644 999999999 999998866666555443
No 19
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-13 Score=103.61 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=50.7
Q ss_pred hccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhhh
Q 048224 29 NYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIAK 88 (220)
Q Consensus 29 n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~k 88 (220)
..+.|.+++++||+|||.+|+++|.+||++ |+.||.+|||||++|+++++...+.+
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~----W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRN----WSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 367899999999999999999999999998 99999999999999987777766554
No 20
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.31 E-value=7.8e-13 Score=89.69 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCC--CCCCCCcccchhhhh
Q 048224 36 KRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLP--GRTSNDKLKPEAPKI 86 (220)
Q Consensus 36 ~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lp--gRT~n~~~k~~~~~~ 86 (220)
++++||+|||++|+++|++||.++ |+.||..|| |||+.|++.++.+.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGN---WSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCC---HHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999644 999999999 999998866655443
No 21
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=6.4e-13 Score=95.95 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=47.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CCCchhhHHHhccCCCCCCCCcccchhhhhhh
Q 048224 32 KPNIKRGEFVADEIDLMIRLHKLLG------NRQEHMWSLIAARLPGRTSNDKLKPEAPKIAK 88 (220)
Q Consensus 32 ~P~i~rg~WT~eED~~Ll~lv~~~G------~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~k 88 (220)
+|.+++++||+|||++|+++|.+|| .+ |..||.+|||||+.||+.++.+.+.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~----W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRR----WQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHH----HHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCccc----HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999 45 99999999999999887777666655
No 22
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.27 E-value=2.1e-12 Score=102.44 Aligned_cols=59 Identities=24% Similarity=0.465 Sum_probs=54.2
Q ss_pred CCCCCccccHhhhcC---CCCCHHHHHHHHHhcc-----CCCCCCCCCCHHH-HHHHHHHHHHhCCCC
Q 048224 1 MYGEGKWHQVPLRAG---LNRCRKSCRLRWLNYL-----KPNIKRGEFVADE-IDLMIRLHKLLGNRQ 59 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~---l~R~~kqCr~RW~n~L-----~P~i~rg~WT~eE-D~~Ll~lv~~~G~~~ 59 (220)
+||.|+|..|+..+. .+|++.||++||+|+| +|.++++.|+++| +.+|+.++..||++.
T Consensus 48 k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h~~~g~~~ 115 (122)
T 2roh_A 48 HLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDS 115 (122)
T ss_dssp HHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHHHHHHSSC
T ss_pred HHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhhHH
Confidence 589999999998751 3999999999999999 8999999999999 899999999999984
No 23
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.27 E-value=1.6e-12 Score=113.34 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=46.2
Q ss_pred CccccHhhhcCCCCCHHHHHHHHHhccCCCCC-----------------------------CCCCCHHHHHHHHHHHHH
Q 048224 5 GKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIK-----------------------------RGEFVADEIDLMIRLHKL 54 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~-----------------------------rg~WT~eED~~Ll~lv~~ 54 (220)
..|.+||+.|+ ||++.|||.||.+||+|.|+ +..||.+||-.|++.+++
T Consensus 34 k~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 34 TLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp HHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCceeeeccCccccCccchhccHHHHHHHHH
Confidence 34999999999 99999999999999999997 899999999999999987
No 24
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.24 E-value=2.5e-12 Score=89.00 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=44.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCC-CCCCCCcccchhhh
Q 048224 31 LKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLP-GRTSNDKLKPEAPK 85 (220)
Q Consensus 31 L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lp-gRT~n~~~k~~~~~ 85 (220)
+.+.+.+++||+|||.+|+++|++||.++ |..||++|| |||+.||+.++.+.
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~---W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGN---WADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTC---HHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHCCCCCHHHHHHHHHHH
Confidence 34668899999999999999999999544 999999999 99999887766543
No 25
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.24 E-value=1.2e-12 Score=103.69 Aligned_cols=61 Identities=23% Similarity=0.449 Sum_probs=56.6
Q ss_pred CCCCCccccHhhhcC---CCCCHHHHHHHHHhccC-----CCCCCC-CCCHHHHHHHHHHHHHhCCCCchhhHH
Q 048224 1 MYGEGKWHQVPLRAG---LNRCRKSCRLRWLNYLK-----PNIKRG-EFVADEIDLMIRLHKLLGNRQEHMWSL 65 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~---l~R~~kqCr~RW~n~L~-----P~i~rg-~WT~eED~~Ll~lv~~~G~~~~~~Ws~ 65 (220)
+||.|+|..|+..+. .+|++.||++||+|+|+ |.++++ +|+++|+.+|+.++..||++ |++
T Consensus 34 k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h~~~gn~----~~~ 103 (121)
T 2juh_A 34 HLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQ----QGK 103 (121)
T ss_dssp HHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHHHHHHHH----HCC
T ss_pred HHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHccc----hhc
Confidence 589999999999862 39999999999999999 999999 99999999999999999999 876
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.19 E-value=7.6e-12 Score=88.53 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCC--CCCCCCcccchhhh
Q 048224 35 IKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLP--GRTSNDKLKPEAPK 85 (220)
Q Consensus 35 i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lp--gRT~n~~~k~~~~~ 85 (220)
.++++||+|||++|+++|++||.++ |+.||+.+| |||+.|++.++.+.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGN---WAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCc---hHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999755 999999866 99999876555443
No 27
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.13 E-value=1.5e-11 Score=89.42 Aligned_cols=54 Identities=11% Similarity=0.184 Sum_probs=44.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhh
Q 048224 32 KPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPK 85 (220)
Q Consensus 32 ~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~ 85 (220)
.|.+.+++||++||.+|+++++.||...+..|.+||.+|||||+++|++++...
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 66 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467889999999999999999999932122299999999999999886665543
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.09 E-value=4.6e-11 Score=90.74 Aligned_cols=50 Identities=24% Similarity=0.455 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhh
Q 048224 34 NIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKI 86 (220)
Q Consensus 34 ~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~ 86 (220)
+|++++||+|||++|+++|+.||.++ |..||..|||||+.||..++...+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~---W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKR---WSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTC---HHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCc---HHHHhhhhcCCCHHHHHHHHHhcc
Confidence 47899999999999999999999855 999999999999998877665543
No 29
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.08 E-value=2.3e-11 Score=86.56 Aligned_cols=41 Identities=27% Similarity=0.497 Sum_probs=37.8
Q ss_pred CCCCCccccHhhhcCC-CCCHHHHHHHHHhccCCCCCCCCCC
Q 048224 1 MYGEGKWHQVPLRAGL-NRCRKSCRLRWLNYLKPNIKRGEFV 41 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l-~R~~kqCr~RW~n~L~P~i~rg~WT 41 (220)
+||.++|..||..|++ +|++.|||+||.+||+|.|.+++.+
T Consensus 27 ~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 27 KYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp HHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4899999999999987 8999999999999999999998764
No 30
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.08 E-value=4e-11 Score=82.94 Aligned_cols=35 Identities=26% Similarity=0.621 Sum_probs=33.0
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCC
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIK 36 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~ 36 (220)
+||.++|..||..|+ +|+++|||+||.+||+|.|+
T Consensus 25 ~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 25 QFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp HTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred HhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 489889999999999 99999999999999999985
No 31
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.06 E-value=3.7e-11 Score=80.89 Aligned_cols=33 Identities=36% Similarity=0.787 Sum_probs=30.9
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCC
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPN 34 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~ 34 (220)
+||.++|..||..|+ +|+++|||+||.+||+|+
T Consensus 20 ~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 20 KYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp HHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred HHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 479889999999998 999999999999999995
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.02 E-value=1.3e-10 Score=91.46 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=46.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhh
Q 048224 31 LKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIA 87 (220)
Q Consensus 31 L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~ 87 (220)
..+.+++++||+|||++|+++|.+||.+ |..||..|||||+.||..++.+.+.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~~----W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGSD----WKMIAATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTTC----HHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHhhhcc
Confidence 4568899999999999999999999997 9999999999999988777766553
No 33
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.02 E-value=6.1e-11 Score=79.70 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=31.0
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCC
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPN 34 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~ 34 (220)
+||.++|..||+.|+ +|+++||++||.+||+|+
T Consensus 20 ~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 20 QNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp HHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred HhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 479889999999999 999999999999999995
No 34
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-10 Score=85.50 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=41.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhh
Q 048224 34 NIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAP 84 (220)
Q Consensus 34 ~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~ 84 (220)
...+++||+|||.+|++++++||.+ |..||.+|++||+.||+.++.+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~~RT~~qcr~r~~~ 61 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVGSRTQDECILHFLR 61 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHSSCCHHHHHHHHTT
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHHH
Confidence 4568899999999999999999976 9999999999999988666543
No 35
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.96 E-value=3.5e-10 Score=79.82 Aligned_cols=51 Identities=22% Similarity=0.377 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHh---ccCCCCCCCCcccchhhhhhhcc
Q 048224 35 IKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIA---ARLPGRTSNDKLKPEAPKIAKHN 90 (220)
Q Consensus 35 i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA---~~lpgRT~n~~~k~~~~~~~k~~ 90 (220)
-++.+||+|||+.|++.|++||.+ |+.|+ .+++|||+.+. +.+|..++|+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdL-Kdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDL-AHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHH-HHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchH-HHHHHHHHhcc
Confidence 368899999999999999999997 99999 68899999955 66666666543
No 36
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.95 E-value=7e-10 Score=85.81 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=48.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccC----CCCCCCCcccchhhhhhhccCCCCC
Q 048224 32 KPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARL----PGRTSNDKLKPEAPKIAKHNVIKPR 95 (220)
Q Consensus 32 ~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~l----pgRT~n~~~k~~~~~~~k~~~~kp~ 95 (220)
.+..++++||+|||++|++.|++||..+ |+.|+..+ +|||++++ +.+|..+.+...+.|.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~---W~~I~~~~~~~f~~RT~v~l-KdrWrnllk~~~~~p~ 71 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGR---WRDVKLCAFEDADHRTYVDL-KDKWKTLVHTAKISPQ 71 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSS---HHHHHSSSSSSTTCCCHHHH-HHHHHHHHHTTTCCTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCC---hHHHHHHhccccCCCCHHHH-HHHHHHHHhhccCCcc
Confidence 4578899999999999999999999954 99999965 89999966 5666666665555555
No 37
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.93 E-value=3.9e-10 Score=86.29 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhh
Q 048224 37 RGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKI 86 (220)
Q Consensus 37 rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~ 86 (220)
+++||+|||++|+++|..||..+ |..||..|||||+.||..++.+.+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~---W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKD---WIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSC---HHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCC---HHHHhhhcCCCCHHHHHHHHHHHH
Confidence 68999999999999999999855 999999999999998877766554
No 38
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.91 E-value=2.6e-10 Score=80.61 Aligned_cols=36 Identities=25% Similarity=0.538 Sum_probs=32.5
Q ss_pred CCCCCccccHhhhcCC-CCCHHHHHHHHHhccCCCCC
Q 048224 1 MYGEGKWHQVPLRAGL-NRCRKSCRLRWLNYLKPNIK 36 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l-~R~~kqCr~RW~n~L~P~i~ 36 (220)
+||.++|..||+.+++ +|++.|||+||.|+++|.|+
T Consensus 28 ~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 28 KYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp HHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred ccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4899999999998653 89999999999999999885
No 39
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.90 E-value=3.4e-10 Score=98.69 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=45.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC--CchhhHHHhccCCCCCCCCcccchhhhhhhc
Q 048224 33 PNIKRGEFVADEIDLMIRLHKLLGNR--QEHMWSLIAARLPGRTSNDKLKPEAPKIAKH 89 (220)
Q Consensus 33 P~i~rg~WT~eED~~Ll~lv~~~G~~--~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~k~ 89 (220)
+.+++++||+|||++|+++|++||++ ..+.|..||++|||||+|+++.++...+.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh
Confidence 57889999999999999999999985 1234999999999999998877777666664
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.90 E-value=6e-10 Score=88.10 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhh
Q 048224 37 RGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIA 87 (220)
Q Consensus 37 rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~ 87 (220)
+|+||+|||++|+++|..||..+ |..||..|||||+.||..++...+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~---W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQN---WPRITSFLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCC---GGGGTTSCTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCC---HHHHHHHHCCCCHHHHHHHHhhccC
Confidence 79999999999999999999655 9999999999999988777766553
No 41
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.89 E-value=7.2e-10 Score=87.73 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=48.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhcc----CCCCCCCCcccchhhhhhhccCCCCC
Q 048224 31 LKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAAR----LPGRTSNDKLKPEAPKIAKHNVIKPR 95 (220)
Q Consensus 31 L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~----lpgRT~n~~~k~~~~~~~k~~~~kp~ 95 (220)
+.+..++++||+|||+.|+++|++||..+ |+.|+.. |+|||++++ +.+|..+.+...+.|.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~---W~~Ia~~~~~~f~~RT~v~l-KdRWrnllk~~~~~p~ 75 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGR---WRDVKMRAFDNADHRTYVDL-KDKWKTLVHTASIAPQ 75 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGC---HHHHHHHHCSCCSSCCSHHH-HHHHHHHHHHHHTCST
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHhccccCCCCHHHH-HHHHHHHHhhhccCCc
Confidence 56788999999999999999999999944 9999998 499999976 4455555544444444
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.88 E-value=5.6e-10 Score=82.91 Aligned_cols=53 Identities=21% Similarity=0.331 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhHHHhcc----CCCCCCCCcccchhhhhhhccCCCC
Q 048224 38 GEFVADEIDLMIRLHKLLGNRQEHMWSLIAAR----LPGRTSNDKLKPEAPKIAKHNVIKP 94 (220)
Q Consensus 38 g~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~----lpgRT~n~~~k~~~~~~~k~~~~kp 94 (220)
++||+|||++|+++|++||.++ |+.|++. |+|||+++++.+ |..+.+...+.|
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~---W~~I~~~~~~~~~~RT~~~lKdr-Wrnllk~~~~~p 57 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGR---WRDVKMRAFDNADHRTYVDLKDK-WKTLVHTASIAP 57 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSC---HHHHHHHHCTTCTTSCHHHHHHH-HHHHHHHHHSCG
T ss_pred CCCCHHHHHHHHHHHHHHCCCC---cHHHHHhhccccCCCCHHHHHHH-HHHHHHhccCCc
Confidence 4899999999999999999954 9999995 899999976544 444444433444
No 43
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.81 E-value=1.3e-09 Score=75.55 Aligned_cols=34 Identities=18% Similarity=0.519 Sum_probs=31.3
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCC
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNI 35 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i 35 (220)
+||.++|..||+.|+ +|+++|||+||.+||.|..
T Consensus 25 ~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 25 DCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp HTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred HHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 489899999999999 9999999999999998753
No 44
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.81 E-value=9.6e-10 Score=83.36 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=56.2
Q ss_pred HHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccC-----CCCCCCCcccchhhhhhhccCCCCC
Q 048224 21 KSCRLRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARL-----PGRTSNDKLKPEAPKIAKHNVIKPR 95 (220)
Q Consensus 21 kqCr~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~l-----pgRT~n~~~k~~~~~~~k~~~~kp~ 95 (220)
.=+.++|.+||.| .+||.||++.|++|+++||.+ |..|+.++ ++||..+.+.|++....+....++.
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlR----W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~ 89 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLR----FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV 89 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTC----HHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCC----eeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3467999999987 899999999999999999999 99999999 5899998877777766655444443
Q ss_pred C
Q 048224 96 P 96 (220)
Q Consensus 96 p 96 (220)
|
T Consensus 90 ~ 90 (93)
T 3hm5_A 90 P 90 (93)
T ss_dssp -
T ss_pred C
Confidence 3
No 45
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.79 E-value=1.9e-09 Score=81.61 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhh
Q 048224 36 KRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKI 86 (220)
Q Consensus 36 ~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~ 86 (220)
.+++||+|||.+|++++.+||...+..|.+||.+|||||++++++++...+
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467999999999999999997322223999999999999998877766544
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.78 E-value=3.7e-09 Score=78.48 Aligned_cols=53 Identities=26% Similarity=0.584 Sum_probs=45.5
Q ss_pred CCCCCccccHhhh----cCCCCCHHHHHHHHHhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 048224 1 MYGEGKWHQVPLR----AGLNRCRKSCRLRWLNYL-----KPNIKRG-EFVADEIDLMIRLHKL 54 (220)
Q Consensus 1 kyG~~~W~~Ia~~----~~l~R~~kqCr~RW~n~L-----~P~i~rg-~WT~eED~~Ll~lv~~ 54 (220)
+||.|+|..|++. ++ +|++.||++||+|+| .|.++++ +..++....++.++..
T Consensus 17 k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 17 HLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp HHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 5899999999986 66 999999999999998 7888877 6777777888888765
No 47
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.75 E-value=4.1e-09 Score=83.47 Aligned_cols=60 Identities=23% Similarity=0.352 Sum_probs=47.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccC----CCCCCCCcccchhhhhhhccCCCCC
Q 048224 32 KPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARL----PGRTSNDKLKPEAPKIAKHNVIKPR 95 (220)
Q Consensus 32 ~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~l----pgRT~n~~~k~~~~~~~k~~~~kp~ 95 (220)
....++++||+|||+.|+++|++||.++ |+.|+..+ +|||+.++ +.+|..+.+...+.|.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~---W~~I~~~~~~~~~~RT~vdl-KdRWrnllk~~~~~p~ 89 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGR---WRDVKFRAFENVHHRTYVDL-KDKWKTLVHTASIAPQ 89 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSC---HHHHHHHHHSSSCCCCHHHH-HHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCC---hHHHHHHhccccCCCCHHHH-HHHHHHHHhhccCCcc
Confidence 3456789999999999999999999955 99999974 99999966 5555556655555555
No 48
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.73 E-value=3e-09 Score=73.43 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=28.8
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhcc
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 31 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L 31 (220)
+||.++|..||+.|+.+|+++|||+||.+|+
T Consensus 26 ~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 26 TLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp HTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred HHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4899999999999987899999999999985
No 49
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.67 E-value=4.7e-09 Score=70.85 Aligned_cols=32 Identities=34% Similarity=0.663 Sum_probs=29.3
Q ss_pred CCCCCccccHhhhcCC-CCCHHHHHHHHHhccC
Q 048224 1 MYGEGKWHQVPLRAGL-NRCRKSCRLRWLNYLK 32 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l-~R~~kqCr~RW~n~L~ 32 (220)
+||.++|..||..+++ +|++.||++||.++|+
T Consensus 19 ~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 19 KYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp HHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred HHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 4899999999999987 6999999999999986
No 50
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=71.28 Aligned_cols=44 Identities=14% Similarity=0.057 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchh
Q 048224 36 KRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEA 83 (220)
Q Consensus 36 ~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~ 83 (220)
..++||+||++++++++.+||.+ |..||.+||+||..++...++
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTC----HHHHHHHCTTSCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHH
Confidence 45799999999999999999988 999999999999998765554
No 51
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=4.9e-09 Score=75.39 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=34.6
Q ss_pred CCCC-----CccccHhhhcCCCCCHHHHHHHHHhccCCCCCCCCC
Q 048224 1 MYGE-----GKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEF 40 (220)
Q Consensus 1 kyG~-----~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~W 40 (220)
+||. .+|..||..|+ +|+++|||.||.+||.+.+++|--
T Consensus 25 ~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 25 KYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp HSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred HhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3775 79999999999 999999999999999998887643
No 52
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=4.1e-09 Score=74.10 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=31.8
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCCCC
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGE 39 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg~ 39 (220)
+||. +|..||+ ++ +|+++|||+||.+||+|.++++.
T Consensus 26 ~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 26 LMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp HCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred HcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 3786 9999998 77 89999999999999999887764
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.55 E-value=2.7e-08 Score=76.92 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=50.8
Q ss_pred CCCCCccccHhhhcC---CCCCHHHHHHHHHhcc-----CCCCCCCCCCHHHHHH-HHHHHHHhCCC
Q 048224 1 MYGEGKWHQVPLRAG---LNRCRKSCRLRWLNYL-----KPNIKRGEFVADEIDL-MIRLHKLLGNR 58 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~---l~R~~kqCr~RW~n~L-----~P~i~rg~WT~eED~~-Ll~lv~~~G~~ 58 (220)
+||.|+|..|+..+. .+|++.+|++||+|+| +|.+++|.-+|+|-.. ++.|+..+|+.
T Consensus 30 k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~~~~~~~ 96 (105)
T 2aje_A 30 KLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQ 96 (105)
T ss_dssp HHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 589999999998762 3999999999999999 7999999999988777 88888887755
No 54
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.39 E-value=4.3e-08 Score=70.13 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=32.2
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCC
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKR 37 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~r 37 (220)
+||. +|..||..|+ +|++.||+.||.+||++.++.
T Consensus 26 ~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 26 KFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp HTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred HHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 4887 9999999999 999999999999999987776
No 55
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.35 E-value=2.9e-07 Score=66.46 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=42.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhhhc
Q 048224 33 PNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIAKH 89 (220)
Q Consensus 33 P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~k~ 89 (220)
+..+.+.||.||+++|.+++.+|+...+..|.+||.+| |||..++++ +++.+.+.
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~-~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTT-KAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHH-HHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHH-HHHHHHHh
Confidence 35678899999999999999999843333399999998 999997755 45555444
No 56
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.15 E-value=5.5e-07 Score=65.97 Aligned_cols=28 Identities=32% Similarity=0.782 Sum_probs=26.5
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhc
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNY 30 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~ 30 (220)
+|| ++|..||++|+ +|++.||+.||.++
T Consensus 35 ~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 35 MYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp HSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred HhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 489 89999999999 99999999999998
No 57
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.01 E-value=4.7e-06 Score=60.41 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhh
Q 048224 37 RGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPK 85 (220)
Q Consensus 37 rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~ 85 (220)
..+||.+|+.+|.++...|+...+..|..||.++||||..++++++...
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4589999999999999999875445599999999999999886555444
No 58
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.22 E-value=9.7e-07 Score=65.75 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=28.4
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCC
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKP 33 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P 33 (220)
+||. +|..||..|+ +|++.||+.||.+||+-
T Consensus 33 ~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 33 EHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 5897 8999999999 99999999999999873
No 59
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.95 E-value=2.6e-06 Score=73.85 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhh
Q 048224 36 KRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAP 84 (220)
Q Consensus 36 ~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~ 84 (220)
..++||+||+.++++++.+||+. |..||+.+++||.+|+++.++.
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVN 176 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHH
Confidence 35699999999999999999998 9999999999999987655543
No 60
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.89 E-value=2.2e-06 Score=61.94 Aligned_cols=30 Identities=13% Similarity=0.433 Sum_probs=26.7
Q ss_pred CC---CCccccHhhhcCCCCCHHHHHHHHHhccC
Q 048224 2 YG---EGKWHQVPLRAGLNRCRKSCRLRWLNYLK 32 (220)
Q Consensus 2 yG---~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~ 32 (220)
|| ..+|..||..|+ ||+.+||+.||.+++.
T Consensus 36 ~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 36 YPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 66 468999999999 9999999999998764
No 61
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.65 E-value=1.6e-05 Score=57.47 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=27.8
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccCCCCCCC
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRG 38 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P~i~rg 38 (220)
+||. +|..||+.| +|++.||+.||. .|....+.|
T Consensus 40 ~~G~-kW~~IA~~l--gRt~~q~knRw~-~L~~~~~~G 73 (73)
T 2llk_A 40 KHGN-DWATIGAAL--GRSASSVKDRCR-LMKDTCNTG 73 (73)
T ss_dssp HHSS-CHHHHHHHH--TSCHHHHHHHHH-HCSCCCSCC
T ss_pred HHCC-CHHHHHHHh--CCCHHHHHHHHH-HHHHHccCC
Confidence 3786 599999998 899999999997 576665544
No 62
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=6.1e-05 Score=52.59 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=43.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhc-cCCCCCCCCcccchh
Q 048224 32 KPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAA-RLPGRTSNDKLKPEA 83 (220)
Q Consensus 32 ~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~-~lpgRT~n~~~k~~~ 83 (220)
.|.+...+||+||-.+-.+.+.+||.. |..|++ .||.||-.++.+-++
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHh
Confidence 478889999999999999999999998 999999 699999998765554
No 63
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.46 E-value=5.2e-05 Score=52.52 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCchhhHHHhc-cCCCCCCCCcccchhhh
Q 048224 37 RGEFVADEIDLMIRLHKLL--------GNRQEHMWSLIAA-RLPGRTSNDKLKPEAPK 85 (220)
Q Consensus 37 rg~WT~eED~~Ll~lv~~~--------G~~~~~~Ws~IA~-~lpgRT~n~~~k~~~~~ 85 (220)
|.+||+|||.+|+..|.++ |++ .|..+|. .+|++|-...+.++.+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~---iwk~la~~~~~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNA---LWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSH---HHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHH---HHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 5689999999999999999 554 5999999 79999988665555443
No 64
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.42 E-value=4.1e-05 Score=57.72 Aligned_cols=27 Identities=11% Similarity=0.288 Sum_probs=24.6
Q ss_pred CCccccHhhhcCCCCCHHHHHHHHHhcc
Q 048224 4 EGKWHQVPLRAGLNRCRKSCRLRWLNYL 31 (220)
Q Consensus 4 ~~~W~~Ia~~~~l~R~~kqCr~RW~n~L 31 (220)
..+|..||..++ ||+.+||+.||.+++
T Consensus 31 ~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 31 PDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp TTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 467999999999 999999999998874
No 65
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.44 E-value=3.1e-05 Score=55.40 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhh
Q 048224 39 EFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKI 86 (220)
Q Consensus 39 ~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~ 86 (220)
-||.|||..||..+++-|.. +.-|..||..| +||.+|+..|+...+
T Consensus 16 lWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLM 61 (70)
Confidence 59999999999999999981 11299999999 999998766665544
No 66
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.31 E-value=3.6e-05 Score=55.84 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccch
Q 048224 37 RGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPE 82 (220)
Q Consensus 37 rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~ 82 (220)
.++||.+|++++.++...|+...+.-|.+||..+||||..++++.+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 4589999999999999999875444599999999999998775544
No 67
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.29 E-value=7.5e-05 Score=56.25 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchhhhhh
Q 048224 39 EFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEAPKIA 87 (220)
Q Consensus 39 ~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~~~~~ 87 (220)
-||.|||..||..+++.|.. +.-|+.||+.|.+|+.+++..|++..|.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s-~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQ-PHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSC-TTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCC-hhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 69999999999999999981 1129999999999999988777766554
No 68
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.05 E-value=0.00022 Score=53.87 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=46.6
Q ss_pred HHHHhccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCC-----CCCCCCcccchhhhhhhcc
Q 048224 25 LRWLNYLKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLP-----GRTSNDKLKPEAPKIAKHN 90 (220)
Q Consensus 25 ~RW~n~L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lp-----gRT~n~~~k~~~~~~~k~~ 90 (220)
+.|..+|.. ..||.||.+.|+.|++.|+-+ |..|+.+.. .||-.+.+.+++....+-.
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlR----w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~ 84 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLR----FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTC----HHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCC----eEEEeeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 457777763 689999999999999999999 999999874 6787777667666555533
No 69
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.00068 Score=46.73 Aligned_cols=29 Identities=7% Similarity=0.034 Sum_probs=25.2
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhcc
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 31 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L 31 (220)
+|| .+|..||..++ +|+..||+++|....
T Consensus 29 ~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 29 QHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp HST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred HhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 488 59999999998 999999999997653
No 70
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.61 E-value=0.00089 Score=50.26 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccchh
Q 048224 37 RGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPEA 83 (220)
Q Consensus 37 rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~~ 83 (220)
...||+||-.+..+...+||.. |.+||..||+||..++..-++
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHh
Confidence 4589999999999999999998 999999999999998765544
No 71
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.41 E-value=0.0028 Score=44.99 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhHHHhc-cCCCCCCCCcccchh
Q 048224 37 RGEFVADEIDLMIRLHKLLGNRQEHMWSLIAA-RLPGRTSNDKLKPEA 83 (220)
Q Consensus 37 rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~-~lpgRT~n~~~k~~~ 83 (220)
..+||++|-.+-.+.+.+||.. |..|++ .||+||-.++.+-++
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999998 999999 699999998766665
No 72
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.45 E-value=0.0078 Score=43.36 Aligned_cols=28 Identities=21% Similarity=0.638 Sum_probs=25.0
Q ss_pred CCccccHhhhcCCCCCHHHHHHHHHhccC
Q 048224 4 EGKWHQVPLRAGLNRCRKSCRLRWLNYLK 32 (220)
Q Consensus 4 ~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~ 32 (220)
+++|..||..++ +|+..+|+.||...++
T Consensus 31 p~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 31 PGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred ccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 478999999999 9999999999987754
No 73
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.22 E-value=0.0073 Score=57.29 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCccc
Q 048224 37 RGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLK 80 (220)
Q Consensus 37 rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k 80 (220)
..+||.||-.++++.+.+||.. |..||..++.||..|++.
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgTKT~~Qvk~ 419 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKN 419 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSSCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCCCCHHHHHH
Confidence 5699999999999999999998 999999999999997644
No 74
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.12 E-value=0.0064 Score=41.84 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=25.6
Q ss_pred CCCccccHhh-hcCCCCCHHHHHHHHHhccC
Q 048224 3 GEGKWHQVPL-RAGLNRCRKSCRLRWLNYLK 32 (220)
Q Consensus 3 G~~~W~~Ia~-~~~l~R~~kqCr~RW~n~L~ 32 (220)
|..-|.++++ .++ +++-.|||+||+++|+
T Consensus 29 Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 29 GNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp SSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred cHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5566999999 677 9999999999999986
No 75
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.12 E-value=0.0063 Score=52.67 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=27.2
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHHHHHhccC
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLK 32 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~RW~n~L~ 32 (220)
+|| .+|..||+.++ +|+..||+..|.+|.+
T Consensus 150 kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 150 KYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp HHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred HHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 488 58999999999 9999999999999865
No 76
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.46 E-value=0.023 Score=40.56 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCccccHhhhcCCCCCHHHHHHHHHhcc
Q 048224 4 EGKWHQVPLRAGLNRCRKSCRLRWLNYL 31 (220)
Q Consensus 4 ~~~W~~Ia~~~~l~R~~kqCr~RW~n~L 31 (220)
...|..||..+ ||+.+||+.||....
T Consensus 31 ~~RW~~IA~~l--gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 31 PGRWEKIAHEL--GRSVTDVTTKAKQLK 56 (72)
T ss_dssp TTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 36799999886 799999999997654
No 77
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.72 E-value=0.11 Score=46.54 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=54.1
Q ss_pred CCCCCccccHhhhcCCCCCHHHHHH-------HH-----------------------Hh--------------------c
Q 048224 1 MYGEGKWHQVPLRAGLNRCRKSCRL-------RW-----------------------LN--------------------Y 30 (220)
Q Consensus 1 kyG~~~W~~Ia~~~~l~R~~kqCr~-------RW-----------------------~n--------------------~ 30 (220)
+||..+|..||..|+ +++....+. || .. .
T Consensus 127 kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~~Ki~~~~~P~~~L~i 205 (304)
T 1ofc_X 127 KYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQKMSRYRAPFHQLRL 205 (304)
T ss_dssp HHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHCCC
T ss_pred HhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHhcc
Confidence 588889999999998 888776644 22 00 1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhc------------cCCCCCCCC
Q 048224 31 LKPNIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAA------------RLPGRTSND 77 (220)
Q Consensus 31 L~P~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~------------~lpgRT~n~ 77 (220)
..|.-+...||++||..||-.+.+||...+..|..|.. ++--||+.+
T Consensus 206 ~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~e 264 (304)
T 1ofc_X 206 QYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALE 264 (304)
T ss_dssp CCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHH
T ss_pred ccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHH
Confidence 11333556899999999999999999922223999972 445688776
No 78
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=92.42 E-value=0.046 Score=39.46 Aligned_cols=26 Identities=31% Similarity=0.797 Sum_probs=21.9
Q ss_pred ccccHhhhc---CCCCCHHHHHHHHHhcc
Q 048224 6 KWHQVPLRA---GLNRCRKSCRLRWLNYL 31 (220)
Q Consensus 6 ~W~~Ia~~~---~l~R~~kqCr~RW~n~L 31 (220)
.|..||..| |-+|++.||+.+|.|..
T Consensus 35 ~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 35 LWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 599999987 45899999999998743
No 79
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=92.38 E-value=0.057 Score=38.99 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHHh------CCCCchhhHHHhccCC----CCCCCCcccchhhhhhh
Q 048224 37 RGEFVADEIDLMIRLHKLL------GNRQEHMWSLIAARLP----GRTSNDKLKPEAPKIAK 88 (220)
Q Consensus 37 rg~WT~eED~~Ll~lv~~~------G~~~~~~Ws~IA~~lp----gRT~n~~~k~~~~~~~k 88 (220)
...||.+|-.+||.++..+ |..+...|..||..|. .||+.||..++......
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999863 2334457999999874 69988764444443333
No 80
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=91.60 E-value=0.05 Score=38.02 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=25.3
Q ss_pred CCCCCccccHhh---hcCCCCCHHHHHHHHHhccC
Q 048224 1 MYGEGKWHQVPL---RAGLNRCRKSCRLRWLNYLK 32 (220)
Q Consensus 1 kyG~~~W~~Ia~---~~~l~R~~kqCr~RW~n~L~ 32 (220)
+||. +|..|+. .+. +|+.-...+||++..+
T Consensus 25 k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 25 TMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp HHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred HHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 5897 9999995 445 9999999999988654
No 81
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=88.26 E-value=0.22 Score=35.92 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=21.2
Q ss_pred CCccccHhhhcCCCCCHHHHHHHHH
Q 048224 4 EGKWHQVPLRAGLNRCRKSCRLRWL 28 (220)
Q Consensus 4 ~~~W~~Ia~~~~l~R~~kqCr~RW~ 28 (220)
+..|..||..+| ||+..+|+.+|.
T Consensus 43 pdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 43 PDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp CSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 347999999999 999999999883
No 82
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=85.62 E-value=0.9 Score=37.34 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhHHHhc
Q 048224 38 GEFVADEIDLMIRLHKLLGNRQEHMWSLIAA 68 (220)
Q Consensus 38 g~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~ 68 (220)
..||.+||..||..+.+||..+ |..|..
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~---w~~Ir~ 162 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGS---WEMIKM 162 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCc---HHHHHh
Confidence 3699999999999999999887 998876
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=82.74 E-value=0.25 Score=46.87 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCCcccch
Q 048224 38 GEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSNDKLKPE 82 (220)
Q Consensus 38 g~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~~~k~~ 82 (220)
..||++|..+..+.+.+||.. |..|+++||+||-.++...|
T Consensus 190 d~WT~eE~~lFe~al~~yGKd----F~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKT----FHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ---------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCcc----HHHHHHHcCCCCHHHHHHHh
Confidence 479999999999999999999 99999999999999865443
No 84
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=80.17 E-value=1.3 Score=38.85 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhHHHhc
Q 048224 38 GEFVADEIDLMIRLHKLLGNRQEHMWSLIAA 68 (220)
Q Consensus 38 g~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~ 68 (220)
..|+.+||..||.-+.+||..+ |..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~---We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGS---WTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCc---HHHHhc
Confidence 3599999999999999999998 999975
No 85
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.08 E-value=0.83 Score=31.24 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCCCCccccHhhh-cCCCCCHHHHHHHHHh
Q 048224 1 MYGEGKWHQVPLR-AGLNRCRKSCRLRWLN 29 (220)
Q Consensus 1 kyG~~~W~~Ia~~-~~l~R~~kqCr~RW~n 29 (220)
+||. +|..|++. ++ +|+..||.+-|..
T Consensus 26 ~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 26 QYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp HTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred HhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 4785 89999984 77 9999999988753
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=76.40 E-value=1.5 Score=32.48 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=22.2
Q ss_pred CCCCccccHhhhcCCCCCHHHHHHHHH
Q 048224 2 YGEGKWHQVPLRAGLNRCRKSCRLRWL 28 (220)
Q Consensus 2 yG~~~W~~Ia~~~~l~R~~kqCr~RW~ 28 (220)
|| .+|..||..++ +|+..||.+-|.
T Consensus 61 ~g-K~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 61 HP-KNFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp ST-TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred cC-CCHHHHHHHcC-CCCHHHHHHHHh
Confidence 77 58999999988 999999999774
No 87
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=73.99 E-value=3.3 Score=36.94 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhHHHhccCCCCCCCC
Q 048224 38 GEFVADEIDLMIRLHKLLGNRQEHMWSLIAARLPGRTSND 77 (220)
Q Consensus 38 g~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~lpgRT~n~ 77 (220)
+.||..+....++++.+||..+ |..||..|+|.|..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~---~~~IA~ev~~Kt~eE 147 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDD---IDNIAKDVEGKTPEE 147 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTTCCHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHH---HHHHHHHhcCCCHHH
Confidence 4799999999999999999987 999999999999876
No 88
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=72.31 E-value=1.7 Score=30.38 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=22.7
Q ss_pred CCCCCccccHhh-hcCCCCCHHHHHHHHHh
Q 048224 1 MYGEGKWHQVPL-RAGLNRCRKSCRLRWLN 29 (220)
Q Consensus 1 kyG~~~W~~Ia~-~~~l~R~~kqCr~RW~n 29 (220)
+||. +|..|++ .++ +|+..||.+-|..
T Consensus 25 ~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 25 KYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp HTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred HhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 4785 8999998 477 9999999998753
No 89
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=64.26 E-value=10 Score=26.31 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=32.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhHHHhccC--CCCCCCC
Q 048224 34 NIKRGEFVADEIDLMIRLHKLLGNRQEHMWSLIAARL--PGRTSND 77 (220)
Q Consensus 34 ~i~rg~WT~eED~~Ll~lv~~~G~~~~~~Ws~IA~~l--pgRT~n~ 77 (220)
.-.+-.||+|.-+.-++++.++|.. .--+..|...| +|.|-.+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~gLT~~~ 48 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTREN 48 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCTTCCHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCCCCCHHH
Confidence 3456789999999999999999943 23367888876 5666553
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=59.71 E-value=5.7 Score=32.41 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC--CCchhhHHHhc--cCCCCCCCC
Q 048224 34 NIKRGEFVADEIDLMIRLHKLLGN--RQEHMWSLIAA--RLPGRTSND 77 (220)
Q Consensus 34 ~i~rg~WT~eED~~Ll~lv~~~G~--~~~~~Ws~IA~--~lpgRT~n~ 77 (220)
.-....||..|-..+++.+..||. .. |..|+. .|+++|..+
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r---~~~I~~da~L~~Ks~~~ 48 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLER---LDAIARDAELVDKSETD 48 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGC---HHHHHHHTTCTTSCHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhH---HHHHHHHhccCCCCHHH
Confidence 345668999999999999999992 22 999986 478998776
No 91
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=51.37 E-value=13 Score=34.04 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCchhhHHHhcc------------CCCCCCCC
Q 048224 36 KRGEFVADEIDLMIRLHKLLGN---RQEHMWSLIAAR------------LPGRTSND 77 (220)
Q Consensus 36 ~rg~WT~eED~~Ll~lv~~~G~---~~~~~Ws~IA~~------------lpgRT~n~ 77 (220)
+...||++||..||-++.+||. ++ |..|-.. +.-||+..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~---we~Ir~~Ir~~p~FrFDwF~kSRT~~E 280 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDV---YELVRDEIRDCPLFELDFYFRSRTPVE 280 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCC---HHHHHHHHHHCSGGGSCHHHHTCCHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCCh---HHHHHHHHHhCcchhhhHHHhcCCHHH
Confidence 4568999999999999999998 65 9888443 34577775
No 92
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=43.13 E-value=21 Score=29.28 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=25.6
Q ss_pred HHHHHHHhccC-CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 048224 22 SCRLRWLNYLK-PNIKRGEFVADEIDLMI--------RLHKLLG 56 (220)
Q Consensus 22 qCr~RW~n~L~-P~i~rg~WT~eED~~Ll--------~lv~~~G 56 (220)
+.-+.|..--. |.-.+|-||+++|+.|. +|.++||
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 44555554444 56779999999999874 7888887
No 93
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=40.10 E-value=16 Score=27.30 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.2
Q ss_pred CccccHhhhcCCCCCHHHHHHHHHh
Q 048224 5 GKWHQVPLRAGLNRCRKSCRLRWLN 29 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~~kqCr~RW~n 29 (220)
..|..||+.++ +|++.|.++|+..
T Consensus 56 ~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 56 HTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp TTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred hHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 46899999999 9999999999943
No 94
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.77 E-value=12 Score=28.12 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=24.0
Q ss_pred CccccHhhhcCCCCCHHHHHHHHHhccCC
Q 048224 5 GKWHQVPLRAGLNRCRKSCRLRWLNYLKP 33 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P 33 (220)
+.|.+||..++... +.+.+..|.+||.|
T Consensus 71 ~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 71 QQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp TCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred CcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57999999998655 78899999999876
No 95
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=30.06 E-value=22 Score=27.24 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=35.3
Q ss_pred CccccHhhhcCCCCC----HHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHH
Q 048224 5 GKWHQVPLRAGLNRC----RKSCRLRWLNYLKPNIKRGEFVADEIDLMIRLHK 53 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~----~kqCr~RW~n~L~P~i~rg~WT~eED~~Ll~lv~ 53 (220)
+.|.+||..++...+ +.+-|..|.+||.|-- .++++|-..|..-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 579999999986542 3577888999998843 278888888876654
No 96
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=28.71 E-value=21 Score=26.25 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=23.6
Q ss_pred CccccHhhhcCCCC----CHHHHHHHHHhccCCC
Q 048224 5 GKWHQVPLRAGLNR----CRKSCRLRWLNYLKPN 34 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R----~~kqCr~RW~n~L~P~ 34 (220)
+.|.+||..++... .+.+.+.-|.+||.|-
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 57999999998644 2467888899999873
No 97
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=28.48 E-value=22 Score=26.75 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=22.7
Q ss_pred CccccHhhhcCCCCC---HHHHHHHHHhccCC
Q 048224 5 GKWHQVPLRAGLNRC---RKSCRLRWLNYLKP 33 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~---~kqCr~RW~n~L~P 33 (220)
+.|.+|+..|+...+ +.+-|..|.+||.|
T Consensus 62 ~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 62 RRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp TTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 579999999986543 56778888888875
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=27.40 E-value=52 Score=28.59 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCCchhhHHHhcc--CCCCCCCC
Q 048224 37 RGEFVADEIDLMIRLHKLLG---NRQEHMWSLIAAR--LPGRTSND 77 (220)
Q Consensus 37 rg~WT~eED~~Ll~lv~~~G---~~~~~~Ws~IA~~--lpgRT~n~ 77 (220)
+++||.-|-..|++.+..|| .+ |..|+.- |+.++...
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R----~e~I~~dA~L~~ks~~~ 44 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEI----LDELIADGTLPVKSFEK 44 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTC----HHHHHHTTSSCCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHH----HHHHHHhcccccCCHHH
Confidence 67899999999999999999 46 9999774 66666554
No 99
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=27.19 E-value=21 Score=27.21 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=23.6
Q ss_pred CccccHhhhcCCCCC----HHHHHHHHHhccCC
Q 048224 5 GKWHQVPLRAGLNRC----RKSCRLRWLNYLKP 33 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~----~kqCr~RW~n~L~P 33 (220)
+.|.+||..++...+ +.+.+.-|.+||.|
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 579999999986543 56788889999887
No 100
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=25.62 E-value=23 Score=26.90 Aligned_cols=29 Identities=17% Similarity=0.457 Sum_probs=22.9
Q ss_pred CccccHhhhcCCCCC---HHHHHHHHHhccCC
Q 048224 5 GKWHQVPLRAGLNRC---RKSCRLRWLNYLKP 33 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~---~kqCr~RW~n~L~P 33 (220)
+.|.+||..++...+ +.+.|.-|.+||.|
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 579999999987653 45778888888865
No 101
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=25.15 E-value=24 Score=25.83 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=22.1
Q ss_pred CccccHhhhcCCCCC---HHHHHHHHHhccCC
Q 048224 5 GKWHQVPLRAGLNRC---RKSCRLRWLNYLKP 33 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~---~kqCr~RW~n~L~P 33 (220)
+.|.+||..++...+ +.+-+.-|.+||.|
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 579999999986554 45777778888764
No 102
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=23.03 E-value=26 Score=25.17 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=22.2
Q ss_pred CccccHhhhcCCCC---CHHHHHHHHHhccCC
Q 048224 5 GKWHQVPLRAGLNR---CRKSCRLRWLNYLKP 33 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R---~~kqCr~RW~n~L~P 33 (220)
+.|.+|+..++... .+.+.+.-|.+||.|
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 57999999998644 255778888888864
No 103
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=21.25 E-value=21 Score=27.31 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=22.6
Q ss_pred CccccHhhhcCCCCCHHHHHHHHHhccCC
Q 048224 5 GKWHQVPLRAGLNRCRKSCRLRWLNYLKP 33 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~~kqCr~RW~n~L~P 33 (220)
+.|.+|+..++... +.+-+.-|.+||.|
T Consensus 70 k~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 70 QQWSMVAQRLQISD-YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCCh-HHHHHHHHHHHHHH
Confidence 57999999998655 77888888888765
No 104
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.62 E-value=35 Score=25.82 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=21.5
Q ss_pred CccccHhhhcCCCCC---HHHHHHHHHhccCC
Q 048224 5 GKWHQVPLRAGLNRC---RKSCRLRWLNYLKP 33 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~---~kqCr~RW~n~L~P 33 (220)
+.|.+|+..++...+ +.+-|..|.+||.|
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 579999999986543 35677778877764
No 105
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=20.45 E-value=74 Score=24.74 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=30.9
Q ss_pred CccccHhhhcCCCCC----HHHHHHHHHhccCC--CCCCCCCCHHHHHH
Q 048224 5 GKWHQVPLRAGLNRC----RKSCRLRWLNYLKP--NIKRGEFVADEIDL 47 (220)
Q Consensus 5 ~~W~~Ia~~~~l~R~----~kqCr~RW~n~L~P--~i~rg~WT~eED~~ 47 (220)
+.|.+|+..+++..+ +.+.+.-|.+||.| ...+|.=.++|-..
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~ 134 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQA 134 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 579999999986442 56888899999998 34455555555443
Done!