BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048227
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 95 LFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR 153
L++ G S ++L F + L LDLS N+ LY + SFG L LK ++ N+
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY---LHPSFGKLNSLKSIDFSSNQ 159
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 106 NMSLFYPF----EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSI 158
N S PF LQ+LD+SGN+ G + + + +LK+LN+ N+F I
Sbjct: 208 NFSTGIPFLGDCSALQHLDISGNKLSGDFSR----AISTCTELKLLNISSNQFVGPI 260
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 106 NMSLFYPF----EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSI 158
N S PF LQ+LD+SGN+ G + + + +LK+LN+ N+F I
Sbjct: 211 NFSTGIPFLGDCSALQHLDISGNKLSGDFSR----AISTCTELKLLNISSNQFVGPI 263
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 65 WEGVKCSATTRRVMQLSLNKTTKFNDS----NYNLFYGGPSASLLNMSLFYPFEELQNLD 120
W S + R++ +S N+ + S N L Y S + L +P L++LD
Sbjct: 37 WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD 96
Query: 121 LSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS 157
LS N F+ L K FG++ QLK L L S
Sbjct: 97 LSFNAFDALPICK---EFGNMSQLKFLGLSTTHLEKS 130
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 28 LELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTK 87
LE + VS+ G D +L G D + CD+ EG C +R S + T K
Sbjct: 17 LEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEG--CVG--KRFFDPSSSSTFK 72
Query: 88 FNDSNYNLFYG 98
D N N+ YG
Sbjct: 73 ETDYNLNITYG 83
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155
FY L++LDLS N L + FG L LK LNL N +
Sbjct: 96 FYSLGSLEHLDLSDNHLSSL----SSSWFGPLSSLKYLNLMGNPYQ 137
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155
FY L++LDLS N L + FG L LK LNL N +
Sbjct: 70 FYSLGSLEHLDLSDNHLSSL----SSSWFGPLSSLKYLNLMGNPYQ 111
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND 156
F P+++L+ +DLS N+ L D+F L+ L L L N+ +
Sbjct: 52 FSPYKKLRRIDLSNNQISELAP----DAFQGLRSLNSLVLYGNKITE 94
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND 156
F P+++L+ +DLS N+ L D+F L+ L L L N+ +
Sbjct: 52 FSPYKKLRRIDLSNNQISELAP----DAFQGLRSLNSLVLYGNKITE 94
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154
L +F L LDL N+ + L E F L QLK L+L DN+
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEG----VFDKLTQLKQLSLNDNQL 193
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 74 TRRVMQLSLNKTTKFNDSNYNLFYGGP----SASLLNMSLFYPFE 114
T R L LN+ T N+ NY L P SAS++ + PFE
Sbjct: 59 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFE 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,843,123
Number of Sequences: 62578
Number of extensions: 188670
Number of successful extensions: 390
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 24
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)