Query 048227
Match_columns 179
No_of_seqs 384 out of 2644
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:37:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 8.4E-20 1.8E-24 168.1 14.3 141 20-178 27-200 (968)
2 PLN03150 hypothetical protein; 99.8 2E-18 4.4E-23 152.7 11.9 134 16-179 366-503 (623)
3 PLN00113 leucine-rich repeat r 99.2 2.5E-11 5.4E-16 112.2 6.8 66 110-179 519-584 (968)
4 PF13855 LRR_8: Leucine rich r 99.2 2E-11 4.4E-16 76.1 3.2 61 114-178 1-61 (61)
5 PLN03150 hypothetical protein; 99.1 2.7E-10 5.8E-15 101.2 6.2 84 75-177 442-526 (623)
6 PF08263 LRRNT_2: Leucine rich 99.0 6E-10 1.3E-14 64.8 4.5 43 20-71 1-43 (43)
7 KOG0617 Ras suppressor protein 98.9 1.1E-10 2.4E-15 87.3 -1.6 84 74-179 32-115 (264)
8 PF13855 LRR_8: Leucine rich r 98.7 1.8E-08 3.8E-13 62.7 3.9 60 76-154 2-61 (61)
9 KOG0472 Leucine-rich repeat pr 98.7 1.3E-08 2.9E-13 84.7 3.3 76 96-179 446-541 (565)
10 PF14580 LRR_9: Leucine-rich r 98.6 3.8E-08 8.3E-13 74.2 3.6 64 110-178 60-125 (175)
11 PF12799 LRR_4: Leucine Rich r 98.6 6.2E-08 1.3E-12 56.5 3.3 37 114-155 1-37 (44)
12 PF14580 LRR_9: Leucine-rich r 98.5 1.2E-07 2.6E-12 71.5 4.2 80 76-179 20-101 (175)
13 PF12799 LRR_4: Leucine Rich r 98.5 1.7E-07 3.7E-12 54.6 3.4 37 142-179 1-37 (44)
14 KOG4194 Membrane glycoprotein 98.4 8E-08 1.7E-12 83.4 0.3 65 110-178 289-353 (873)
15 KOG0618 Serine/threonine phosp 98.3 9.6E-08 2.1E-12 86.2 -1.4 96 59-176 372-486 (1081)
16 KOG0617 Ras suppressor protein 98.3 2.3E-07 5E-12 69.7 0.6 66 108-178 96-162 (264)
17 PRK15370 E3 ubiquitin-protein 98.3 1.1E-05 2.3E-10 73.3 11.2 40 11-62 52-95 (754)
18 KOG0444 Cytoskeletal regulator 98.2 2.2E-07 4.8E-12 81.5 -0.0 82 76-178 104-185 (1255)
19 KOG4194 Membrane glycoprotein 98.2 2.2E-06 4.8E-11 74.7 5.2 94 74-178 124-233 (873)
20 KOG0472 Leucine-rich repeat pr 98.2 7.1E-07 1.5E-11 74.6 1.9 91 76-178 389-517 (565)
21 PRK15387 E3 ubiquitin-protein 98.2 2.4E-06 5.3E-11 77.5 5.3 57 114-179 402-458 (788)
22 KOG4237 Extracellular matrix p 98.1 4.6E-07 1E-11 75.4 0.0 83 76-178 68-152 (498)
23 KOG4237 Extracellular matrix p 98.1 8.7E-07 1.9E-11 73.8 0.5 67 109-179 269-335 (498)
24 cd00116 LRR_RI Leucine-rich re 97.9 4.5E-06 9.8E-11 67.5 2.2 62 113-178 164-233 (319)
25 KOG0444 Cytoskeletal regulator 97.9 4.4E-07 9.4E-12 79.7 -4.0 90 75-178 245-351 (1255)
26 KOG0618 Serine/threonine phosp 97.9 2.4E-06 5.2E-11 77.5 0.5 81 76-178 46-126 (1081)
27 cd00116 LRR_RI Leucine-rich re 97.9 6.9E-06 1.5E-10 66.4 2.1 66 114-179 137-206 (319)
28 PLN03210 Resistant to P. syrin 97.8 4.9E-05 1.1E-09 72.3 7.3 62 110-176 653-714 (1153)
29 PRK15387 E3 ubiquitin-protein 97.8 5.3E-05 1.1E-09 69.0 6.9 14 115-128 303-316 (788)
30 KOG4579 Leucine-rich repeat (L 97.8 2.4E-06 5.3E-11 61.9 -1.6 84 74-178 52-135 (177)
31 COG4886 Leucine-rich repeat (L 97.8 2E-05 4.4E-10 66.1 3.3 58 115-178 141-198 (394)
32 PRK15370 E3 ubiquitin-protein 97.7 5.4E-05 1.2E-09 68.9 6.0 54 115-178 242-295 (754)
33 PLN03210 Resistant to P. syrin 97.7 9E-05 1.9E-09 70.5 7.2 63 110-177 630-692 (1153)
34 KOG1259 Nischarin, modulator o 97.6 2.2E-05 4.9E-10 63.8 1.0 61 112-179 282-342 (490)
35 KOG1259 Nischarin, modulator o 97.5 2.3E-05 5E-10 63.7 0.3 60 113-178 306-386 (490)
36 KOG2739 Leucine-rich acidic nu 97.5 8.5E-05 1.8E-09 58.8 2.6 64 109-178 60-128 (260)
37 KOG0532 Leucine-rich repeat (L 97.4 1.1E-05 2.4E-10 70.1 -2.7 63 110-179 185-247 (722)
38 KOG4579 Leucine-rich repeat (L 97.4 2.2E-05 4.8E-10 57.0 -0.8 64 110-179 49-113 (177)
39 KOG4658 Apoptotic ATPase [Sign 97.4 4.7E-05 1E-09 70.3 1.0 63 110-177 567-629 (889)
40 COG4886 Leucine-rich repeat (L 97.4 4.3E-05 9.3E-10 64.1 0.6 63 109-177 158-220 (394)
41 PF00560 LRR_1: Leucine Rich R 97.2 0.0001 2.3E-09 36.2 0.5 16 116-132 2-17 (22)
42 KOG4658 Apoptotic ATPase [Sign 97.2 0.00021 4.5E-09 66.1 2.4 67 98-175 585-651 (889)
43 KOG0531 Protein phosphatase 1, 97.1 0.00029 6.3E-09 59.8 2.4 61 110-178 114-174 (414)
44 KOG0531 Protein phosphatase 1, 97.0 0.00034 7.3E-09 59.5 1.9 63 110-179 91-153 (414)
45 KOG0532 Leucine-rich repeat (L 96.9 6.7E-05 1.5E-09 65.3 -3.2 60 112-178 164-223 (722)
46 PF00560 LRR_1: Leucine Rich R 96.9 0.00058 1.3E-08 33.5 1.5 22 143-165 1-22 (22)
47 KOG1644 U2-associated snRNP A' 96.9 0.0017 3.6E-08 50.1 4.4 81 76-178 43-125 (233)
48 KOG1859 Leucine-rich repeat pr 96.5 0.00038 8.3E-09 62.5 -1.4 42 111-159 184-225 (1096)
49 KOG1859 Leucine-rich repeat pr 96.5 0.00024 5.3E-09 63.7 -2.9 68 110-178 205-291 (1096)
50 KOG2982 Uncharacterized conser 96.4 0.00071 1.5E-08 55.1 -0.3 86 75-177 71-157 (418)
51 KOG2739 Leucine-rich acidic nu 96.2 0.0035 7.7E-08 49.7 2.6 61 113-179 42-104 (260)
52 KOG0473 Leucine-rich repeat pr 96.0 0.00013 2.9E-09 57.4 -6.4 84 74-179 41-124 (326)
53 KOG1644 U2-associated snRNP A' 95.9 0.0093 2E-07 46.0 3.5 60 113-178 41-100 (233)
54 KOG3207 Beta-tubulin folding c 95.5 0.009 1.9E-07 50.9 2.4 63 113-178 245-313 (505)
55 PF13504 LRR_7: Leucine rich r 95.3 0.01 2.2E-07 27.1 1.2 13 143-155 2-14 (17)
56 COG5238 RNA1 Ran GTPase-activa 94.9 0.017 3.7E-07 46.7 2.0 103 75-178 30-169 (388)
57 smart00369 LRR_TYP Leucine-ric 94.7 0.031 6.8E-07 28.1 2.2 20 141-161 1-20 (26)
58 smart00370 LRR Leucine-rich re 94.7 0.031 6.8E-07 28.1 2.2 20 141-161 1-20 (26)
59 KOG1909 Ran GTPase-activating 94.7 0.0097 2.1E-07 49.2 0.4 102 75-178 30-169 (382)
60 KOG3207 Beta-tubulin folding c 94.7 0.017 3.6E-07 49.3 1.7 68 110-178 267-338 (505)
61 KOG1909 Ran GTPase-activating 94.4 0.021 4.6E-07 47.3 1.5 69 110-178 209-282 (382)
62 KOG2982 Uncharacterized conser 94.1 0.018 4E-07 47.1 0.7 63 112-178 69-133 (418)
63 KOG3665 ZYG-1-like serine/thre 93.4 0.051 1.1E-06 49.4 2.3 42 137-178 215-262 (699)
64 KOG3665 ZYG-1-like serine/thre 93.0 0.083 1.8E-06 48.1 3.0 17 141-157 249-265 (699)
65 PF13516 LRR_6: Leucine Rich r 92.0 0.021 4.6E-07 28.2 -1.2 13 115-127 3-15 (24)
66 KOG2123 Uncharacterized conser 92.0 0.0089 1.9E-07 48.4 -4.0 60 110-172 59-123 (388)
67 smart00365 LRR_SD22 Leucine-ri 89.6 0.31 6.6E-06 24.8 1.8 15 141-155 1-15 (26)
68 PF13306 LRR_5: Leucine rich r 88.4 1.6 3.5E-05 30.0 5.6 59 109-175 53-112 (129)
69 smart00364 LRR_BAC Leucine-ric 87.8 0.35 7.7E-06 24.6 1.3 18 142-160 2-19 (26)
70 KOG2123 Uncharacterized conser 86.5 0.046 1E-06 44.4 -3.7 61 110-177 37-99 (388)
71 PRK15386 type III secretion pr 86.4 1.1 2.3E-05 38.5 4.1 61 75-162 52-114 (426)
72 smart00368 LRR_RI Leucine rich 85.7 0.71 1.5E-05 23.7 1.8 12 143-154 3-14 (28)
73 KOG0473 Leucine-rich repeat pr 83.8 0.023 4.9E-07 45.1 -6.4 63 110-178 38-100 (326)
74 PF13306 LRR_5: Leucine rich r 82.4 2.9 6.3E-05 28.7 4.4 66 105-176 26-91 (129)
75 KOG2120 SCF ubiquitin ligase, 82.1 0.17 3.6E-06 41.7 -2.3 59 114-176 185-244 (419)
76 KOG2120 SCF ubiquitin ligase, 80.2 0.81 1.8E-05 37.8 1.0 59 111-175 310-372 (419)
77 PRK15386 type III secretion pr 79.9 2 4.2E-05 36.9 3.2 12 75-86 72-83 (426)
78 COG5238 RNA1 Ran GTPase-activa 79.2 2 4.3E-05 35.1 2.9 42 137-178 87-132 (388)
79 KOG3763 mRNA export factor TAP 59.9 5 0.00011 35.6 1.4 62 112-178 216-282 (585)
80 KOG3864 Uncharacterized conser 45.6 3.5 7.5E-05 32.0 -1.6 32 142-173 151-183 (221)
81 smart00367 LRR_CC Leucine-rich 36.6 28 0.00061 17.0 1.5 11 166-176 2-12 (26)
82 KOG4308 LRR-containing protein 34.8 3.8 8.3E-05 35.8 -3.2 41 138-178 257-302 (478)
83 KOG3763 mRNA export factor TAP 28.2 30 0.00064 30.9 1.1 64 74-156 217-284 (585)
84 KOG1947 Leucine rich repeat pr 24.4 50 0.0011 27.8 1.8 13 164-176 293-305 (482)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=8.4e-20 Score=168.07 Aligned_cols=141 Identities=30% Similarity=0.470 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCCccceEeCCCCCCEEEEEcCCCCCCC----------
Q 048227 20 LETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFN---------- 89 (179)
Q Consensus 20 ~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~w~Gv~C~~~~~~v~~l~L~~~~~l~---------- 89 (179)
.++|+.||++||+++. +|.+ .+.+|+.. .+|| .|.||+|+. .++|+.|+|+++. +.
T Consensus 27 ~~~~~~~l~~~~~~~~-----~~~~-~~~~w~~~-----~~~c-~w~gv~c~~-~~~v~~L~L~~~~-i~~~~~~~~~~l 92 (968)
T PLN00113 27 HAEELELLLSFKSSIN-----DPLK-YLSNWNSS-----ADVC-LWQGITCNN-SSRVVSIDLSGKN-ISGKISSAIFRL 92 (968)
T ss_pred CHHHHHHHHHHHHhCC-----CCcc-cCCCCCCC-----CCCC-cCcceecCC-CCcEEEEEecCCC-ccccCChHHhCC
Confidence 5689999999999997 6764 68899763 6899 999999986 5799999999876 54
Q ss_pred ------CCCcCccCCCCCcccc-CCc----------------cCCCCCCCcEEeccCCccCccccCccccccCcccCCCE
Q 048227 90 ------DSNYNLFYGGPSASLL-NMS----------------LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKI 146 (179)
Q Consensus 90 ------~~~~n~~~g~ip~~~~-~~~----------------~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~ 146 (179)
++..|.+.|.+|.... ... ..+.+++|++|+|++|.+++.+|. .++.+++|++
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN----DIGSFSSLKV 168 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh----HHhcCCCCCE
Confidence 2456677777765422 000 012344455555555555555554 5555555555
Q ss_pred EeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 147 LNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 147 L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
|++++|.+.+.+|..++++++|++|+|++|++
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 55555555555555555555555555555543
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.77 E-value=2e-18 Score=152.66 Aligned_cols=134 Identities=31% Similarity=0.390 Sum_probs=108.9
Q ss_pred ccCChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCCccceEeCCC--C--CCEEEEEcCCCCCCCCC
Q 048227 16 YKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSAT--T--RRVMQLSLNKTTKFNDS 91 (179)
Q Consensus 16 ~~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~w~Gv~C~~~--~--~~v~~l~L~~~~~l~~~ 91 (179)
...+.++|..||+++|+.+. ++. ..+|.++.. ....| .|.||.|... . .+|+.|+|++++ +.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~-----~~~---~~~W~g~~C--~p~~~-~w~Gv~C~~~~~~~~~~v~~L~L~~n~-L~-- 431 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLG-----LPL---RFGWNGDPC--VPQQH-PWSGADCQFDSTKGKWFIDGLGLDNQG-LR-- 431 (623)
T ss_pred ccccCchHHHHHHHHHHhcC-----Ccc---cCCCCCCCC--CCccc-ccccceeeccCCCCceEEEEEECCCCC-cc--
Confidence 44566789999999999986 443 247976210 00113 6999999531 1 259999999998 87
Q ss_pred CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEE
Q 048227 92 NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTL 171 (179)
Q Consensus 92 ~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 171 (179)
|.+|.. ++.+++|+.|+|++|+++|.+|. .++.+++|+.|||++|+++|.+|+.++++++|++|
T Consensus 432 ------g~ip~~------i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 432 ------GFIPND------ISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred ------ccCCHH------HhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 888876 78899999999999999999998 89999999999999999999999999999999999
Q ss_pred eCCCCcCC
Q 048227 172 ILRFNNIE 179 (179)
Q Consensus 172 ~Ls~N~lt 179 (179)
+|++|+|+
T Consensus 496 ~Ls~N~l~ 503 (623)
T PLN03150 496 NLNGNSLS 503 (623)
T ss_pred ECcCCccc
Confidence 99999874
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.20 E-value=2.5e-11 Score=112.20 Aligned_cols=66 Identities=27% Similarity=0.446 Sum_probs=56.5
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..+++|++|+|++|.++|.+|. .++.+++|+.|||++|+++|.+|..+.++++|++|++++|+++
T Consensus 519 ~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQLSGQIPA----SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred HcCccCCCEEECCCCcccccCCh----hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 67788888888888888888888 8888888888888888888888888888888888888888763
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.17 E-value=2e-11 Score=76.14 Aligned_cols=61 Identities=31% Similarity=0.453 Sum_probs=54.5
Q ss_pred CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++|++|++++|+++...+. .|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999974445 789999999999999999977778999999999999999986
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.05 E-value=2.7e-10 Score=101.21 Aligned_cols=84 Identities=27% Similarity=0.383 Sum_probs=74.4
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
.+++.|+|+++. +. |.+|.. ++.+++|+.|+|++|+++|.+|. .++.+++|++|+|++|+|
T Consensus 442 ~~L~~L~Ls~N~-l~--------g~iP~~------~~~l~~L~~LdLs~N~lsg~iP~----~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 442 RHLQSINLSGNS-IR--------GNIPPS------LGSITSLEVLDLSYNSFNGSIPE----SLGQLTSLRILNLNGNSL 502 (623)
T ss_pred CCCCEEECCCCc-cc--------CcCChH------HhCCCCCCEEECCCCCCCCCCch----HHhcCCCCCEEECcCCcc
Confidence 457778888877 76 888876 88899999999999999999999 999999999999999999
Q ss_pred CCcChhhhCCC-CCCCEEeCCCCc
Q 048227 155 NDSILRYLNTL-TSLTTLILRFNN 177 (179)
Q Consensus 155 ~g~iP~~l~~l-~~L~~L~Ls~N~ 177 (179)
+|.+|..++.+ .++..+++.+|.
T Consensus 503 ~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 503 SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cccCChHHhhccccCceEEecCCc
Confidence 99999998864 467889998885
No 6
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=99.01 E-value=6e-10 Score=64.76 Aligned_cols=43 Identities=35% Similarity=0.699 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCCccceEeC
Q 048227 20 LETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCS 71 (179)
Q Consensus 20 ~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~w~Gv~C~ 71 (179)
+++|++||++||+++. .+|.+ .+.+|+.... .+|| +|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~----~~~~~-~l~~W~~~~~---~~~C-~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLN----NDPSG-VLSSWNPSSD---SDPC-SWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-----SC-C-CCTT--TT-----S-CC-CSTTEEE-
T ss_pred CcHHHHHHHHHHHhcc----cccCc-ccccCCCcCC---CCCe-eeccEEeC
Confidence 3689999999999997 23543 8999998521 5899 99999996
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.91 E-value=1.1e-10 Score=87.32 Aligned_cols=84 Identities=30% Similarity=0.483 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC
Q 048227 74 TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR 153 (179)
Q Consensus 74 ~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~ 153 (179)
..+++.+.|+++. ++ .+|+. +..+.+|+.|++++|+++. +|. +++.+++|++|+++.|+
T Consensus 32 ~s~ITrLtLSHNK-l~---------~vppn------ia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LT---------VVPPN------IAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNR 90 (264)
T ss_pred hhhhhhhhcccCc-ee---------ecCCc------HHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhh
Confidence 3578999999998 76 45554 7778899999999999987 788 89999999999999999
Q ss_pred CCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 154 FNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 154 l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+. ..|..||.++.|++|||..|+++
T Consensus 91 l~-~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 91 LN-ILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hh-cCccccCCCchhhhhhccccccc
Confidence 98 78999999999999999998863
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=1.8e-08 Score=62.72 Aligned_cols=60 Identities=25% Similarity=0.473 Sum_probs=50.4
Q ss_pred CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
+++.|+++++. +. . +....|..+++|++|++++|+++...|. .|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~-l~---------~-----i~~~~f~~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNK-LT---------E-----IPPDSFSNLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSST-ES---------E-----ECTTTTTTGTTESEEEETSSSESEEETT----TTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCC-CC---------c-----cCHHHHcCCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCCcC
Confidence 57788899888 76 2 2334588899999999999999986666 889999999999999985
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.67 E-value=1.3e-08 Score=84.72 Aligned_cols=76 Identities=25% Similarity=0.307 Sum_probs=61.4
Q ss_pred cCCCCCccccCCccCCCCCCCcEEeccCCccCccccCc--------------------cccccCcccCCCEEeCcCCCCC
Q 048227 96 FYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENK--------------------TYDSFGSLKQLKILNLGDNRFN 155 (179)
Q Consensus 96 ~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~--------------------~~~~l~~l~~L~~L~Ls~N~l~ 155 (179)
+.-.+|.+ ++.+..||.||++.|+|.- +|.- ....+.+|++|..|||.+|.+.
T Consensus 446 ~Ln~LP~e------~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 446 LLNDLPEE------MGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred hhhhcchh------hhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence 33566655 7778889999999998864 5430 0114889999999999999999
Q ss_pred CcChhhhCCCCCCCEEeCCCCcCC
Q 048227 156 DSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 156 g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.||+.+|+|++|++|++++|.|.
T Consensus 519 -~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 -QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -hCChhhccccceeEEEecCCccC
Confidence 89999999999999999999874
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=3.8e-08 Score=74.15 Aligned_cols=64 Identities=31% Similarity=0.421 Sum_probs=23.8
Q ss_pred CCCCCCCcEEeccCCccCccccCcccccc-CcccCCCEEeCcCCCCCCc-ChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSF-GSLKQLKILNLGDNRFNDS-ILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l-~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..++.|+.|++++|+++. +++ .+ ..+++|++|++++|++... --..+..+++|++|+|.+|.+
T Consensus 60 l~~L~~L~~L~L~~N~I~~-i~~----~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRISS-ISE----GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ----TT--EEE--SS---S--CH----HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ccChhhhhhcccCCCCCCc-ccc----chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 4556777777777777765 433 33 3467777777777777531 114456677777777777765
No 11
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.57 E-value=6.2e-08 Score=56.49 Aligned_cols=37 Identities=32% Similarity=0.544 Sum_probs=27.6
Q ss_pred CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~ 155 (179)
++|++|++++|+|+. +|+ .+++|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~----~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPP----ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGG----HGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCc----hHhCCCCCCEEEecCCCCC
Confidence 467888888888885 776 6888888888888888887
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.50 E-value=1.2e-07 Score=71.47 Aligned_cols=80 Identities=31% Similarity=0.432 Sum_probs=28.2
Q ss_pred CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCC-CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFY-PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~-~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
+.++|+|.++. ++ .|. .++ .+.+|+.|+|++|.++. ++ .+..+++|+.|++++|++
T Consensus 20 ~~~~L~L~~n~-I~---------~Ie-------~L~~~l~~L~~L~Ls~N~I~~-l~-----~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 20 KLRELNLRGNQ-IS---------TIE-------NLGATLDKLEVLDLSNNQITK-LE-----GLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S---T-----T----TT--EEE--SS--
T ss_pred ccccccccccc-cc---------ccc-------chhhhhcCCCEEECCCCCCcc-cc-----CccChhhhhhcccCCCCC
Confidence 56888999988 76 111 144 47889999999999987 55 578899999999999999
Q ss_pred CCcChhhh-CCCCCCCEEeCCCCcCC
Q 048227 155 NDSILRYL-NTLTSLTTLILRFNNIE 179 (179)
Q Consensus 155 ~g~iP~~l-~~l~~L~~L~Ls~N~lt 179 (179)
+ .+++.+ ..+++|++|+|++|++.
T Consensus 77 ~-~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 77 S-SISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp --S-CHHHHHH-TT--EEE-TTS---
T ss_pred C-ccccchHHhCCcCCEEECcCCcCC
Confidence 9 465544 46899999999999873
No 13
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.47 E-value=1.7e-07 Score=54.59 Aligned_cols=37 Identities=35% Similarity=0.444 Sum_probs=32.2
Q ss_pred cCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 142 KQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 142 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++|++|++++|+++ .+|+.+++|++|++|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 47999999999999 78888999999999999999985
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.37 E-value=8e-08 Score=83.39 Aligned_cols=65 Identities=29% Similarity=0.381 Sum_probs=43.0
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+-+|+.|+.|+||+|.+...-+. .+...++|++|||++|+++---|.+|..+.+|+.|+|++|++
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred ccccchhhhhccchhhhheeecc----hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 44567777777777777765565 666667777777777777755555666666666666666654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.27 E-value=9.6e-08 Score=86.23 Aligned_cols=96 Identities=28% Similarity=0.426 Sum_probs=59.3
Q ss_pred CCCCCCccceEeCCCCCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCcc----
Q 048227 59 SDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKT---- 134 (179)
Q Consensus 59 ~~~C~~w~Gv~C~~~~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~---- 134 (179)
+|-| |.-..|- .+++-|+|++|. +. ++|+ +.+.++..|+.|+||+|+++. +|..-
T Consensus 372 td~c--~p~l~~~---~hLKVLhLsyNr-L~---------~fpa-----s~~~kle~LeeL~LSGNkL~~-Lp~tva~~~ 430 (1081)
T KOG0618|consen 372 TDSC--FPVLVNF---KHLKVLHLSYNR-LN---------SFPA-----SKLRKLEELEELNLSGNKLTT-LPDTVANLG 430 (1081)
T ss_pred cccc--hhhhccc---cceeeeeecccc-cc---------cCCH-----HHHhchHHhHHHhcccchhhh-hhHHHHhhh
Confidence 3556 7767764 478899999998 74 5554 346778888888999998886 66500
Q ss_pred --------------ccccCcccCCCEEeCcCCCCCC-cChhhhCCCCCCCEEeCCCC
Q 048227 135 --------------YDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 135 --------------~~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N 176 (179)
|.++.+++.|+.+|+|.|+++- .+|..... ++|++|||++|
T Consensus 431 ~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 1144555555566666665542 23332221 55666666555
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.26 E-value=2.3e-07 Score=69.71 Aligned_cols=66 Identities=33% Similarity=0.437 Sum_probs=50.6
Q ss_pred ccCCCCCCCcEEeccCCccC-ccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 108 SLFYPFEELQNLDLSGNRFE-GLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 108 ~~l~~l~~L~~L~Ls~N~l~-g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
..|+.++.|++|||..|+++ ..+|. .|-.|..|+-|+|+.|.|. .+|+.++++++|+.|.+..|.+
T Consensus 96 rgfgs~p~levldltynnl~e~~lpg----nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred cccCCCchhhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 34777788888888877775 34666 6666777777777777777 7888899999999998888864
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.25 E-value=1.1e-05 Score=73.35 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=30.0
Q ss_pred HHhhcccCChHHHHHHHHHHHhhccccccCCCCCcCCCC----CCCCCCCCCCCCC
Q 048227 11 TEMHGYKACLETERTALLELKSFFVSVSDIGYDHEILRS----WGGDDEGMSSDCC 62 (179)
Q Consensus 11 ~~~~~~~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~----W~~~~~~~s~~~C 62 (179)
-+++..+...++|.+.++++.+.+. .|. .+.+ |.+. +++|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~l~-----~p~--~~~~~~~~~~~~-----~~fc 95 (754)
T PRK15370 52 YLCHPPETASPEEIKSKFECLRMLA-----FPA--YADNIQYSRGGA-----DQYC 95 (754)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhc-----CCc--hhhccccccCCC-----Cccc
Confidence 3455667778899999999999997 665 3444 8874 6788
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.23 E-value=2.2e-07 Score=81.50 Aligned_cols=82 Identities=26% Similarity=0.291 Sum_probs=61.4
Q ss_pred CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227 76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~ 155 (179)
.++-|||+.++ +. .+|.+ +..-+++-+|+||+|++.. ||.. -+-+|+.|-+||||+|++.
T Consensus 104 dLt~lDLShNq-L~---------EvP~~------LE~AKn~iVLNLS~N~Iet-IPn~---lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 104 DLTILDLSHNQ-LR---------EVPTN------LEYAKNSIVLNLSYNNIET-IPNS---LFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred cceeeecchhh-hh---------hcchh------hhhhcCcEEEEcccCcccc-CCch---HHHhhHhHhhhccccchhh
Confidence 46777777777 65 44433 4445677788888888876 6652 4567888888888888888
Q ss_pred CcChhhhCCCCCCCEEeCCCCcC
Q 048227 156 DSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 156 g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
.+|+.+.++..|++|+|++|.+
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChh
Confidence 7888888888888888888865
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.20 E-value=2.2e-06 Score=74.69 Aligned_cols=94 Identities=28% Similarity=0.336 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCCCCC----------------CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccc
Q 048227 74 TRRVMQLSLNKTTKFN----------------DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDS 137 (179)
Q Consensus 74 ~~~v~~l~L~~~~~l~----------------~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~ 137 (179)
.++++.++|.+|. ++ +++.|.++ .|| ...|..=.++++|+|++|+++..--. .
T Consensus 124 sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is-~i~-----~~sfp~~~ni~~L~La~N~It~l~~~----~ 192 (873)
T KOG4194|consen 124 SGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNLIS-EIP-----KPSFPAKVNIKKLNLASNRITTLETG----H 192 (873)
T ss_pred ccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhchhh-ccc-----CCCCCCCCCceEEeeccccccccccc----c
Confidence 4778888888887 65 22333322 111 12244445788888888888764444 6
Q ss_pred cCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 138 FGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 138 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
|..+.+|..|.|++|+++-..+..|.++++|+.|+|..|++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 77778888888888888844445667788888888888875
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.18 E-value=7.1e-07 Score=74.59 Aligned_cols=91 Identities=30% Similarity=0.324 Sum_probs=67.5
Q ss_pred CEEEEEcCCCCCCCCC---------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCc
Q 048227 76 RVMQLSLNKTTKFNDS---------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGS 140 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~---------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~ 140 (179)
-|+.++++++. +..+ ..|...+-+| ..+..+++|..|+|++|.+.. +|. +++.
T Consensus 389 ~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~------~~l~~l~kLt~L~L~NN~Ln~-LP~----e~~~ 456 (565)
T KOG0472|consen 389 IVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVP------LELSQLQKLTFLDLSNNLLND-LPE----EMGS 456 (565)
T ss_pred ceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccch------HHHHhhhcceeeecccchhhh-cch----hhhh
Confidence 38999999988 6511 0111112222 236778999999999999887 998 9999
Q ss_pred ccCCCEEeCcCCCCC----------------------CcChhh-hCCCCCCCEEeCCCCcC
Q 048227 141 LKQLKILNLGDNRFN----------------------DSILRY-LNTLTSLTTLILRFNNI 178 (179)
Q Consensus 141 l~~L~~L~Ls~N~l~----------------------g~iP~~-l~~l~~L~~L~Ls~N~l 178 (179)
+..|+.||+|.|+|. |.+|++ +.+|.+|+.|||.+|.+
T Consensus 457 lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 999999999999887 233333 67788999999998875
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.17 E-value=2.4e-06 Score=77.51 Aligned_cols=57 Identities=30% Similarity=0.286 Sum_probs=43.8
Q ss_pred CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++|+.|++++|+|++ +|. . +.+|+.|++++|+|+ .+|..++++++|+.|+|++|+|+
T Consensus 402 s~L~~LdLS~N~Lss-IP~----l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPM----L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCCEEEccCCcCCC-CCc----c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 356666666666665 554 3 245777888888888 78999999999999999999885
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.14 E-value=4.6e-07 Score=75.41 Aligned_cols=83 Identities=25% Similarity=0.377 Sum_probs=60.4
Q ss_pred CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcC-CCC
Q 048227 76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD-NRF 154 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~-N~l 154 (179)
..++|+|..|+ ++ .||+ ..|..+++|+.||||+|+|+-.-|. .|..+++|..|-+.+ |+|
T Consensus 68 ~tveirLdqN~-I~---------~iP~-----~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 68 ETVEIRLDQNQ-IS---------SIPP-----GAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred cceEEEeccCC-cc---------cCCh-----hhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCch
Confidence 46788888887 76 4443 4588899999999999999987777 777777776665544 888
Q ss_pred CCcCh-hhhCCCCCCCEEeCCCCcC
Q 048227 155 NDSIL-RYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 155 ~g~iP-~~l~~l~~L~~L~Ls~N~l 178 (179)
+ .+| ..|++|.+|+-|.+.-|++
T Consensus 129 ~-~l~k~~F~gL~slqrLllNan~i 152 (498)
T KOG4237|consen 129 T-DLPKGAFGGLSSLQRLLLNANHI 152 (498)
T ss_pred h-hhhhhHhhhHHHHHHHhcChhhh
Confidence 8 444 4677777777766665554
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.08 E-value=8.7e-07 Score=73.80 Aligned_cols=67 Identities=27% Similarity=0.354 Sum_probs=49.7
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
-|..|++|++|+|++|++++.-+. .|..+..+++|.|..|++.-.--..|.++..|+.|+|.+|+||
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred HHhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 478899999999999999996666 6666677777777777776444455666777777777777654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.94 E-value=4.5e-06 Score=67.48 Aligned_cols=62 Identities=27% Similarity=0.405 Sum_probs=27.9
Q ss_pred CCCCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCCCc----ChhhhCCCCCCCEEeCCCCcC
Q 048227 113 FEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFNDS----ILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 113 l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+++|++|++++|.+++. ++. .+..+++|++|++++|.+++. ++..+..+++|++|++++|++
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAE----GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHH----HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 34455555555555421 111 233334555555555555422 223334445555555555543
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.93 E-value=4.4e-07 Score=79.71 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCCCCC---------------CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccC--ccccCccccc
Q 048227 75 RRVMQLSLNKTTKFN---------------DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFE--GLYENKTYDS 137 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~---------------~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~--g~iP~~~~~~ 137 (179)
..+..++|+++. ++ +++.|+++ .+|. .+++|++|+.|.+.+|+++ | ||. .
T Consensus 245 ~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt-~LP~------avcKL~kL~kLy~n~NkL~FeG-iPS----G 311 (1255)
T KOG0444|consen 245 RNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLT-VLPD------AVCKLTKLTKLYANNNKLTFEG-IPS----G 311 (1255)
T ss_pred hhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhc-cchH------HHhhhHHHHHHHhccCcccccC-Ccc----c
Confidence 456778888887 66 23444443 3343 3677888888888888754 5 787 7
Q ss_pred cCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 138 FGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 138 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++.|.+|+.+..++|++. -+|+.+.+|.+|+.|.|+.|++
T Consensus 312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 888888888888888887 6788888888888887777764
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.93 E-value=2.4e-06 Score=77.48 Aligned_cols=81 Identities=26% Similarity=0.403 Sum_probs=57.2
Q ss_pred CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227 76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~ 155 (179)
++..||++++. + +.+|.. +..+.+|+.|+++.|.+.. .|. +..++++|++|.|..|++.
T Consensus 46 ~L~~l~lsnn~-~---------~~fp~~------it~l~~L~~ln~s~n~i~~-vp~----s~~~~~~l~~lnL~~n~l~ 104 (1081)
T KOG0618|consen 46 KLKSLDLSNNQ-I---------SSFPIQ------ITLLSHLRQLNLSRNYIRS-VPS----SCSNMRNLQYLNLKNNRLQ 104 (1081)
T ss_pred eeEEeeccccc-c---------ccCCch------hhhHHHHhhcccchhhHhh-Cch----hhhhhhcchhheeccchhh
Confidence 47889999887 5 355554 5556677777777777665 565 6777777777777777776
Q ss_pred CcChhhhCCCCCCCEEeCCCCcC
Q 048227 156 DSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 156 g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
..|.++..+++|++|++++|+|
T Consensus 105 -~lP~~~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 105 -SLPASISELKNLQYLDLSFNHF 126 (1081)
T ss_pred -cCchhHHhhhcccccccchhcc
Confidence 6777777777777777777765
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.87 E-value=6.9e-06 Score=66.41 Aligned_cols=66 Identities=29% Similarity=0.347 Sum_probs=41.7
Q ss_pred CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCC----cChhhhCCCCCCCEEeCCCCcCC
Q 048227 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND----SILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++|+.|++++|.+++..+......+..+++|++|++++|.+++ .++..+..+++|++|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 6777777777777743221001145556678888888887774 24445556677888888877653
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.82 E-value=4.9e-05 Score=72.26 Aligned_cols=62 Identities=21% Similarity=0.089 Sum_probs=42.6
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 176 (179)
++.+++|+.|+|++|..-..+|. .++.+++|+.|+++++..-..+|..+ ++++|++|++++|
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred cccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 55567777777777666566777 77777777777777765545677655 5666666666655
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.81 E-value=5.3e-05 Score=69.01 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=7.0
Q ss_pred CCcEEeccCCccCc
Q 048227 115 ELQNLDLSGNRFEG 128 (179)
Q Consensus 115 ~L~~L~Ls~N~l~g 128 (179)
+|++|++++|+|++
T Consensus 303 ~L~~LdLS~N~L~~ 316 (788)
T PRK15387 303 GLQELSVSDNQLAS 316 (788)
T ss_pred ccceeECCCCcccc
Confidence 44555555555544
No 30
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=2.4e-06 Score=61.89 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC
Q 048227 74 TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR 153 (179)
Q Consensus 74 ~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~ 153 (179)
..+++.++|++|. +. .+|.. .-..++.++.|+|++|.++. +|. ++..++.|+.|+++.|.
T Consensus 52 ~~el~~i~ls~N~-fk---------~fp~k-----ft~kf~t~t~lNl~~neisd-vPe----E~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 52 GYELTKISLSDNG-FK---------KFPKK-----FTIKFPTATTLNLANNEISD-VPE----ELAAMPALRSLNLRFNP 111 (177)
T ss_pred CceEEEEecccch-hh---------hCCHH-----Hhhccchhhhhhcchhhhhh-chH----HHhhhHHhhhcccccCc
Confidence 4578899999998 76 44443 12345678999999999997 898 89999999999999999
Q ss_pred CCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 154 FNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 154 l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
|. ..|..+..+.+|-+|+..+|.+
T Consensus 112 l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 112 LN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cc-cchHHHHHHHhHHHhcCCCCcc
Confidence 99 6788888899999999888764
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.76 E-value=2e-05 Score=66.06 Aligned_cols=58 Identities=34% Similarity=0.492 Sum_probs=39.3
Q ss_pred CCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 115 ~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+|+.|++++|++.- +|. .++.+++|+.|++++|+++ .+|...+.++.|+.|++++|++
T Consensus 141 nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 141 NLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred hcccccccccchhh-hhh----hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcc
Confidence 67777777777665 444 5666777777777777776 5666655667777777777765
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.75 E-value=5.4e-05 Score=68.85 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 115 ~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
.|+.|+|++|++. .+|. .+. ++|+.|++++|+++ .+|..+. ++|++|+|++|+|
T Consensus 242 ~L~~L~Ls~N~L~-~LP~----~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 242 TIQEMELSINRIT-ELPE----RLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred cccEEECcCCccC-cCCh----hHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcc
Confidence 4555666666555 3554 332 35666666666666 4565443 3566666666665
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.71 E-value=9e-05 Score=70.51 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 177 (179)
+..+++|++|+|+++..-+.+| .++.+++|+.|+|++|..-..+|..++++++|++|++++|.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 5678999999999887666677 57889999999999988778999999999999999998863
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.58 E-value=2.2e-05 Score=63.79 Aligned_cols=61 Identities=33% Similarity=0.421 Sum_probs=49.2
Q ss_pred CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
..+.|+.+|||+|.++- |.. +..-++.++.|++|+|.+. .+ ..+..+++|+.|||++|.++
T Consensus 282 TWq~LtelDLS~N~I~~-iDE----SvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ-IDE----SVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hHhhhhhccccccchhh-hhh----hhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH
Confidence 35678999999999886 666 7777889999999999987 33 34788889999999998763
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.52 E-value=2.3e-05 Score=63.72 Aligned_cols=60 Identities=35% Similarity=0.417 Sum_probs=34.2
Q ss_pred CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCc---------------------ChhhhCCCCCCCEE
Q 048227 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS---------------------ILRYLNTLTSLTTL 171 (179)
Q Consensus 113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~---------------------iP~~l~~l~~L~~L 171 (179)
+++++.|++|+|.+.- + . .+..+++|+.||||+|.++.. --..++++-+|.+|
T Consensus 306 ~Pkir~L~lS~N~i~~-v-~----nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnL 379 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRT-V-Q----NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNL 379 (490)
T ss_pred ccceeEEeccccceee-e-h----hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheec
Confidence 3555555555555543 2 1 445555555555555554410 11345667778888
Q ss_pred eCCCCcC
Q 048227 172 ILRFNNI 178 (179)
Q Consensus 172 ~Ls~N~l 178 (179)
|+++|++
T Consensus 380 Dl~~N~I 386 (490)
T KOG1259|consen 380 DLSSNQI 386 (490)
T ss_pred cccccch
Confidence 8888876
No 36
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.45 E-value=8.5e-05 Score=58.77 Aligned_cols=64 Identities=33% Similarity=0.380 Sum_probs=49.4
Q ss_pred cCCCCCCCcEEeccCC--ccCccccCccccccCcccCCCEEeCcCCCCCCcChhhh---CCCCCCCEEeCCCCcC
Q 048227 109 LFYPFEELQNLDLSGN--RFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYL---NTLTSLTTLILRFNNI 178 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N--~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l---~~l~~L~~L~Ls~N~l 178 (179)
.|..|++|++|+++.| ++++.++. -...+++|++|+++.|++. +++.+ ..+.+|..|++.++.-
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCc
Confidence 3667889999999999 77776665 5567799999999999997 34443 4566788888887753
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.44 E-value=1.1e-05 Score=70.12 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=53.0
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++.+.+|+.|.+..|++.. +|+ ++..| .|..||+|.|+++ .||..|.+|+.|++|-|.+|.|+
T Consensus 185 l~~l~slr~l~vrRn~l~~-lp~----El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLED-LPE----ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhHHHHHHHHHhhhhhhh-CCH----HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 6677778888888888776 666 67754 4889999999999 89999999999999999999874
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.43 E-value=2.2e-05 Score=56.98 Aligned_cols=64 Identities=28% Similarity=0.456 Sum_probs=54.3
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccC-cccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFG-SLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~-~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+....+|..++|++|.|.. +|+ .|. ..+.++.|+|++|.++ .+|.++..++.|+.|++++|.|.
T Consensus 49 l~~~~el~~i~ls~N~fk~-fp~----kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKK-FPK----KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HhCCceEEEEecccchhhh-CCH----HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 3455778899999999997 665 554 4468999999999999 89999999999999999999873
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.42 E-value=4.7e-05 Score=70.32 Aligned_cols=63 Identities=32% Similarity=0.400 Sum_probs=57.1
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 177 (179)
|..++.|++|||++|.=-+.+|. +++.|-+|++|+|+...++ .+|..++++.+|.+|++..+.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred HhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccc
Confidence 67799999999999877778999 9999999999999999999 899999999999999998654
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.41 E-value=4.3e-05 Score=64.10 Aligned_cols=63 Identities=27% Similarity=0.358 Sum_probs=53.8
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 177 (179)
.+..++.|+.|++++|+++- +|. ..+.++.|+.|++++|+++ .+|..+..+..|++|.+++|+
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~-l~~----~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSD-LPK----LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhccccccccccCCchhhh-hhh----hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 36788999999999999997 666 5568899999999999999 788877777779999998884
No 41
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.22 E-value=0.0001 Score=36.20 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=8.1
Q ss_pred CcEEeccCCccCccccC
Q 048227 116 LQNLDLSGNRFEGLYEN 132 (179)
Q Consensus 116 L~~L~Ls~N~l~g~iP~ 132 (179)
|++|||++|+|+ .||+
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 445555555555 3544
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.18 E-value=0.00021 Score=66.15 Aligned_cols=67 Identities=31% Similarity=0.275 Sum_probs=58.2
Q ss_pred CCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCC
Q 048227 98 GGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRF 175 (179)
Q Consensus 98 g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 175 (179)
+.+|.+ ++.|-+|++|+|+...++. +|. .+++|+.|.+||+..+..-..+|.....+++|++|.+..
T Consensus 585 ~~LP~~------I~~Li~LryL~L~~t~I~~-LP~----~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 585 SKLPSS------IGELVHLRYLDLSDTGISH-LPS----GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CcCChH------HhhhhhhhcccccCCCccc-cch----HHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 455654 7889999999999999995 999 999999999999999988777777777899999998854
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.10 E-value=0.00029 Score=59.85 Aligned_cols=61 Identities=41% Similarity=0.491 Sum_probs=42.9
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|++++|+++.. . .+..++.|+.|++++|.++ .+ ..+..++.|+.+++++|++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i-~-----~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL-E-----GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred hhhhhcchheeccccccccc-c-----chhhccchhhheeccCcch-hc-cCCccchhhhcccCCcchh
Confidence 45577888888888888763 2 3566677888888888877 23 3345577788888887765
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.01 E-value=0.00034 Score=59.45 Aligned_cols=63 Identities=37% Similarity=0.403 Sum_probs=52.8
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..+++|+.|++..|++.. |.. .+..+++|++|++++|+++...+ +..++.|+.|++++|.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~----~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IEN----LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cccccceeeeeccccchhh-ccc----chhhhhcchheeccccccccccc--hhhccchhhheeccCcch
Confidence 6678999999999999998 443 37889999999999999985433 567778999999999874
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.91 E-value=6.7e-05 Score=65.33 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=29.6
Q ss_pred CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
.+..|..||.+.|.+.. +|+ .++.+.+|+.|.+..|++. .+|+++.. -.|..||++.|++
T Consensus 164 ~~~tl~~ld~s~nei~s-lps----ql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNki 223 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQS-LPS----QLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKI 223 (722)
T ss_pred cchhHHHhhhhhhhhhh-chH----HhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCce
Confidence 33444444444444443 344 4455555555555555554 45555542 2355566666654
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.90 E-value=0.00058 Score=33.47 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.8
Q ss_pred CCCEEeCcCCCCCCcChhhhCCC
Q 048227 143 QLKILNLGDNRFNDSILRYLNTL 165 (179)
Q Consensus 143 ~L~~L~Ls~N~l~g~iP~~l~~l 165 (179)
+|++|||++|+|+ .||+.|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 5899999999999 899987654
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.0017 Score=50.07 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=58.0
Q ss_pred CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227 76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~ 155 (179)
....|||+.+. +. . ...|..++.|+.|.|++|+++..-|. --..+++|..|.|.+|.+.
T Consensus 43 ~~d~iDLtdNd-l~---------~-------l~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDND-LR---------K-------LDNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccc-hh---------h-------cccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchh
Confidence 35667777777 54 1 12366788999999999999984443 2234577999999999886
Q ss_pred CcCh--hhhCCCCCCCEEeCCCCcC
Q 048227 156 DSIL--RYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 156 g~iP--~~l~~l~~L~~L~Ls~N~l 178 (179)
.+- .-+..+++|++|.+-+|+.
T Consensus 102 -~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 102 -ELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred -hhhhcchhccCCccceeeecCCch
Confidence 222 2356788899998888865
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.51 E-value=0.00038 Score=62.50 Aligned_cols=42 Identities=29% Similarity=0.417 Sum_probs=31.0
Q ss_pred CCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh
Q 048227 111 YPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL 159 (179)
Q Consensus 111 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP 159 (179)
.-++.|+.|||++|+|+. + . .+..+++|++|||++|.+. .+|
T Consensus 184 qll~ale~LnLshNk~~~-v-~----~Lr~l~~LkhLDlsyN~L~-~vp 225 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTK-V-D----NLRRLPKLKHLDLSYNCLR-HVP 225 (1096)
T ss_pred HHHHHhhhhccchhhhhh-h-H----HHHhcccccccccccchhc-ccc
Confidence 335678888888888875 2 2 5777888888888888887 555
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.46 E-value=0.00024 Score=63.69 Aligned_cols=68 Identities=28% Similarity=0.268 Sum_probs=38.7
Q ss_pred CCCCCCCcEEeccCCccCccccCcc------------------ccccCcccCCCEEeCcCCCCCCcCh-hhhCCCCCCCE
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKT------------------YDSFGSLKQLKILNLGDNRFNDSIL-RYLNTLTSLTT 170 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~------------------~~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~ 170 (179)
+..|++|++|||+.|++.- +|.-+ +..+.+|++|+.||+++|-+++.-- ..+..|..|+.
T Consensus 205 Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred HHhcccccccccccchhcc-ccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 5667888888888888875 55310 0134455556666666665554321 22334455556
Q ss_pred EeCCCCcC
Q 048227 171 LILRFNNI 178 (179)
Q Consensus 171 L~Ls~N~l 178 (179)
|.|.+|.+
T Consensus 284 L~LeGNPl 291 (1096)
T KOG1859|consen 284 LWLEGNPL 291 (1096)
T ss_pred HhhcCCcc
Confidence 66666543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00071 Score=55.10 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=59.5
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
.+|.++||.+|. +++.+ -....+.+++.|+.|+|+.|+++..|-. .-..+.+|+.|-|.+..+
T Consensus 71 ~~v~elDL~~N~-iSdWs------------eI~~ile~lP~l~~LNls~N~L~s~I~~----lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 71 TDVKELDLTGNL-ISDWS------------EIGAILEQLPALTTLNLSCNSLSSDIKS----LPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhcccch-hccHH------------HHHHHHhcCccceEeeccCCcCCCcccc----CcccccceEEEEEcCCCC
Confidence 367777777777 65211 1112356788999999999999877653 224667888888888877
Q ss_pred CCcCh-hhhCCCCCCCEEeCCCCc
Q 048227 155 NDSIL-RYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 155 ~g~iP-~~l~~l~~L~~L~Ls~N~ 177 (179)
...-- ..+..++.++.|.++.|.
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccch
Confidence 65433 455678888888888884
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.22 E-value=0.0035 Score=49.73 Aligned_cols=61 Identities=30% Similarity=0.362 Sum_probs=45.9
Q ss_pred CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCC--CCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN--RFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N--~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..|+.|.+.+-.++. + . .+..|++|+.|++|.| +.++.++...-.+++|++|+|++|++.
T Consensus 42 ~~~le~ls~~n~gltt-~-~----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-L-T----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceee-c-c----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3455666555555543 1 1 5667899999999999 777777777778899999999999874
No 52
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.96 E-value=0.00013 Score=57.36 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC
Q 048227 74 TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR 153 (179)
Q Consensus 74 ~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~ 153 (179)
..||+.||++.+. +..+. ..|.-++.|..||++.|++.- .|. .++++..+..+++..|.
T Consensus 41 ~kr~tvld~~s~r-~vn~~---------------~n~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 41 FKRVTVLDLSSNR-LVNLG---------------KNFSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNN 99 (326)
T ss_pred cceeeeehhhhhH-HHhhc---------------cchHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccc
Confidence 3689999999887 65211 125557889999999999876 788 89999999999999999
Q ss_pred CCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 154 FNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 154 l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++ ..|.+++..+.++++++-.|.|+
T Consensus 100 ~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 100 HS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hh-hCCccccccCCcchhhhccCcch
Confidence 98 89999999999999999888763
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.90 E-value=0.0093 Score=46.02 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=48.3
Q ss_pred CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+.+...+||++|.+-- ++ .|..+++|..|.|++|+++-.-|.--..+++|+.|.|.+|+|
T Consensus 41 ~d~~d~iDLtdNdl~~-l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK-LD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccccceecccccchhh-cc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 3567899999999865 44 678899999999999999955554444567899999999986
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.009 Score=50.86 Aligned_cols=63 Identities=30% Similarity=0.380 Sum_probs=37.4
Q ss_pred CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCC-cChhh-----hCCCCCCCEEeCCCCcC
Q 048227 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRY-----LNTLTSLTTLILRFNNI 178 (179)
Q Consensus 113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g-~iP~~-----l~~l~~L~~L~Ls~N~l 178 (179)
+..|+.|||++|++-. .+. +.-.+.++.|+.|+++.+.++. .+|+. ...+++|++|++..|++
T Consensus 245 ~~~L~~LdLs~N~li~-~~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLID-FDQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCcccc-ccc--ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5567777777777643 221 0045666777777777776653 22332 24566777777777765
No 55
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.30 E-value=0.01 Score=27.10 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=4.6
Q ss_pred CCCEEeCcCCCCC
Q 048227 143 QLKILNLGDNRFN 155 (179)
Q Consensus 143 ~L~~L~Ls~N~l~ 155 (179)
+|+.|++++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.87 E-value=0.017 Score=46.72 Aligned_cols=103 Identities=22% Similarity=0.308 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCCCCC---------------CCC----cCccCCCCCccccC-----CccCCCCCCCcEEeccCCccCccc
Q 048227 75 RRVMQLSLNKTTKFN---------------DSN----YNLFYGGPSASLLN-----MSLFYPFEELQNLDLSGNRFEGLY 130 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~---------------~~~----~n~~~g~ip~~~~~-----~~~l~~l~~L~~L~Ls~N~l~g~i 130 (179)
..+++++|++|. +. ++. ...|+|.....+.. ...+-+|++|+.++||.|.|.-..
T Consensus 30 d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 357888999887 54 111 12344544333211 234677999999999999998877
Q ss_pred cCccccccCcccCCCEEeCcCCCCCC----cChhhh---------CCCCCCCEEeCCCCcC
Q 048227 131 ENKTYDSFGSLKQLKILNLGDNRFND----SILRYL---------NTLTSLTTLILRFNNI 178 (179)
Q Consensus 131 P~~~~~~l~~l~~L~~L~Ls~N~l~g----~iP~~l---------~~l~~L~~L~Ls~N~l 178 (179)
|+.--.-++.-+.|.+|.+++|.+-- .|-..+ .+-+.|++++...|+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 76100124566889999999998852 222221 2357788888888876
No 57
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.74 E-value=0.031 Score=28.11 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=12.2
Q ss_pred ccCCCEEeCcCCCCCCcChhh
Q 048227 141 LKQLKILNLGDNRFNDSILRY 161 (179)
Q Consensus 141 l~~L~~L~Ls~N~l~g~iP~~ 161 (179)
|++|++|+|++|+++ .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356667777777776 44543
No 58
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.74 E-value=0.031 Score=28.11 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=12.2
Q ss_pred ccCCCEEeCcCCCCCCcChhh
Q 048227 141 LKQLKILNLGDNRFNDSILRY 161 (179)
Q Consensus 141 l~~L~~L~Ls~N~l~g~iP~~ 161 (179)
|++|++|+|++|+++ .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356667777777776 44543
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.74 E-value=0.0097 Score=49.24 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCCCCC---------------CC----CcCccCCCCCccccC-----CccCCCCCCCcEEeccCCccCccc
Q 048227 75 RRVMQLSLNKTTKFN---------------DS----NYNLFYGGPSASLLN-----MSLFYPFEELQNLDLSGNRFEGLY 130 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~---------------~~----~~n~~~g~ip~~~~~-----~~~l~~l~~L~~L~Ls~N~l~g~i 130 (179)
..++.|+|+++. +. .+ -.+.|+|.+-.++.. ...+-..++|++||||.|.|.-.-
T Consensus 30 ~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 457888888876 54 01 123455655433211 123455679999999999986444
Q ss_pred cCcccc-ccCcccCCCEEeCcCCCCCCc-------------ChhhhCCCCCCCEEeCCCCcC
Q 048227 131 ENKTYD-SFGSLKQLKILNLGDNRFNDS-------------ILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 131 P~~~~~-~l~~l~~L~~L~Ls~N~l~g~-------------iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+. ++. -+..+..|++|.|.+|.+.-. .-.-.+.-+.|+++...+|++
T Consensus 109 ~~-~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 109 IR-GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred hH-HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 43 111 245678899999999988621 111234456889998888876
No 60
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.017 Score=49.30 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=43.6
Q ss_pred CCCCCCCcEEeccCCccCcc-ccCcc-ccccCcccCCCEEeCcCCCCCCcCh--hhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGL-YENKT-YDSFGSLKQLKILNLGDNRFNDSIL--RYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~-iP~~~-~~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~Ls~N~l 178 (179)
.+.|+.|+.|+++.+.++.. +|+.+ ..-...+++|++|+++.|++. ..+ ..+..+.+|+.|....|.|
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccc
Confidence 56788888888888877642 23300 001356788999999999985 233 3445566677776666655
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.39 E-value=0.021 Score=47.32 Aligned_cols=69 Identities=29% Similarity=0.246 Sum_probs=39.2
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChh----hh-CCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILR----YL-NTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~----~l-~~l~~L~~L~Ls~N~l 178 (179)
|..+++|++|||..|.|+-.-...--..+..+++|+.|++++..++-.=-. .+ ...++|++|.+.+|.+
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 566788888888888886321100000345566777777777766532111 11 2245667777666655
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=0.018 Score=47.06 Aligned_cols=63 Identities=25% Similarity=0.353 Sum_probs=47.9
Q ss_pred CCCCCcEEeccCCccCcc--ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 112 PFEELQNLDLSGNRFEGL--YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g~--iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
..+.++.+||.+|.++.. |-. -+.+|+.|+.|+|+.|.++..|-..-..+.+|++|-|.+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~----ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGA----ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHH----HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 467899999999999852 222 467899999999999999866543324667888888876544
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.45 E-value=0.051 Score=49.45 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=26.5
Q ss_pred ccCcccCCCEEeCcCCCCCCcC--hh----hhCCCCCCCEEeCCCCcC
Q 048227 137 SFGSLKQLKILNLGDNRFNDSI--LR----YLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 137 ~l~~l~~L~~L~Ls~N~l~g~i--P~----~l~~l~~L~~L~Ls~N~l 178 (179)
.+-+|++|+.||+|..+..... .. .-..|++|+.||.|++.+
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 4566778888888877665321 21 123477888888777654
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.98 E-value=0.083 Score=48.09 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=8.0
Q ss_pred ccCCCEEeCcCCCCCCc
Q 048227 141 LKQLKILNLGDNRFNDS 157 (179)
Q Consensus 141 l~~L~~L~Ls~N~l~g~ 157 (179)
|++|+.||.|+..++..
T Consensus 249 LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEE 265 (699)
T ss_pred CccccEEecCCcchhHH
Confidence 44455555554444433
No 65
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.02 E-value=0.021 Score=28.22 Aligned_cols=13 Identities=46% Similarity=0.733 Sum_probs=4.9
Q ss_pred CCcEEeccCCccC
Q 048227 115 ELQNLDLSGNRFE 127 (179)
Q Consensus 115 ~L~~L~Ls~N~l~ 127 (179)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=0.0089 Score=48.43 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=39.2
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhh-----hCCCCCCCEEe
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY-----LNTLTSLTTLI 172 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~-----l~~l~~L~~L~ 172 (179)
+..|++|++|+|..|.|.. +.. +.-+.++++|+.|.|..|.-.|.-+.. +.-|++|+.||
T Consensus 59 l~rCtrLkElYLRkN~I~s-ldE--L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKNCIES-LDE--LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHHHHHHhccccc-HHH--HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5667777888887777654 211 113567788888888888887776643 34466666664
No 67
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.64 E-value=0.31 Score=24.82 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=11.8
Q ss_pred ccCCCEEeCcCCCCC
Q 048227 141 LKQLKILNLGDNRFN 155 (179)
Q Consensus 141 l~~L~~L~Ls~N~l~ 155 (179)
+++|+.|+|+.|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 467888888888886
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.45 E-value=1.6 Score=29.99 Aligned_cols=59 Identities=14% Similarity=0.283 Sum_probs=26.5
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh-hhhCCCCCCCEEeCCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL-RYLNTLTSLTTLILRF 175 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~ 175 (179)
.|..++.|+.+.+.+ .+.. ++.. .+..+++|+.+++..+ +. .++ ..+.++ +|+.+.+..
T Consensus 53 ~F~~~~~l~~i~~~~-~~~~-i~~~---~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 53 AFSNCKSLESITFPN-NLKS-IGDN---AFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TT-EEEEETS-TT-E-E-TT---TTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred eeecccccccccccc-cccc-cccc---cccccccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 355666677777654 3322 2221 4556677777777654 44 333 344554 666666643
No 69
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.80 E-value=0.35 Score=24.61 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=13.1
Q ss_pred cCCCEEeCcCCCCCCcChh
Q 048227 142 KQLKILNLGDNRFNDSILR 160 (179)
Q Consensus 142 ~~L~~L~Ls~N~l~g~iP~ 160 (179)
.+|+.|++++|+|+ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777888888887 5665
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.49 E-value=0.046 Score=44.42 Aligned_cols=61 Identities=34% Similarity=0.342 Sum_probs=48.0
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh--hhhCCCCCCCEEeCCCCc
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL--RYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~Ls~N~ 177 (179)
...++.|++|.||-|.++..- .+..+++|++|+|-.|.|. .+- ..+.++++|+.|-|..|.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCC
Confidence 456788999999999988743 4678889999999999887 333 456788899998888774
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.36 E-value=1.1 Score=38.52 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccC-CccCccccCccccccCcccCCCEEeCcCC-
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSG-NRFEGLYENKTYDSFGSLKQLKILNLGDN- 152 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N- 152 (179)
...+.|+++++. +. .+|. + -.+|+.|++++ +.++ .+|. .+ .++|+.|++++|
T Consensus 52 ~~l~~L~Is~c~-L~---------sLP~-------L--P~sLtsL~Lsnc~nLt-sLP~----~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 52 RASGRLYIKDCD-IE---------SLPV-------L--PNELTEITIENCNNLT-TLPG----SI--PEGLEKLTVCHCP 105 (426)
T ss_pred cCCCEEEeCCCC-Cc---------ccCC-------C--CCCCcEEEccCCCCcc-cCCc----hh--hhhhhheEccCcc
Confidence 456777887776 65 3331 1 13589999987 4553 3665 44 368999999988
Q ss_pred CCCCcChhhh
Q 048227 153 RFNDSILRYL 162 (179)
Q Consensus 153 ~l~g~iP~~l 162 (179)
++. .+|+.+
T Consensus 106 ~L~-sLP~sL 114 (426)
T PRK15386 106 EIS-GLPESV 114 (426)
T ss_pred ccc-cccccc
Confidence 554 577543
No 72
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.71 E-value=0.71 Score=23.66 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=5.7
Q ss_pred CCCEEeCcCCCC
Q 048227 143 QLKILNLGDNRF 154 (179)
Q Consensus 143 ~L~~L~Ls~N~l 154 (179)
+|++|||++|.|
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344455555443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.76 E-value=0.023 Score=45.05 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=53.5
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+...+.||++.|++.- +-. .++.++.|..||++.|++. ..|..++++..++.+++..|..
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~ 100 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH 100 (326)
T ss_pred hhccceeeeehhhhhHHHh-hcc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch
Confidence 4556788999999999875 444 7888899999999999998 7899999999999999888864
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.40 E-value=2.9 Score=28.70 Aligned_cols=66 Identities=14% Similarity=0.254 Sum_probs=40.2
Q ss_pred cCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227 105 LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 105 ~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 176 (179)
+....|..+++|+.+.+..+ +.. ++.. .+..++.|+.+.+.. .+.-.-...|..+++|+.+++..|
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~-i~~~---~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTS-IGDN---AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSC-E-TT---TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred eChhhccccccccccccccc-ccc-ccee---eeecccccccccccc-cccccccccccccccccccccCcc
Confidence 33455788889999999875 554 4432 677888899999975 444223345667899999988654
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=82.10 E-value=0.17 Score=41.67 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=41.9
Q ss_pred CCCcEEeccCCccCcc-ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227 114 EELQNLDLSGNRFEGL-YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~-iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 176 (179)
+.||+||||...++-. +-. -+..+.+|+.|.|.++++...|-..+.+-.+|+.|+|+..
T Consensus 185 sRlq~lDLS~s~it~stl~~----iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHG----ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhhHHhhcchhheeHHHHHH----HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 3588888888777632 111 3456778888888888888888777877778888877653
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.17 E-value=0.81 Score=37.77 Aligned_cols=59 Identities=27% Similarity=0.175 Sum_probs=42.5
Q ss_pred CCCCCCcEEeccCCc-cCccccCccccccCcccCCCEEeCcCCCCCCcChhh---hCCCCCCCEEeCCC
Q 048227 111 YPFEELQNLDLSGNR-FEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY---LNTLTSLTTLILRF 175 (179)
Q Consensus 111 ~~l~~L~~L~Ls~N~-l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~L~Ls~ 175 (179)
..+++|.+||||.|. ++...-. .|-+++.|++|.++... +.+|.. +...++|.+|++.+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~----~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQ----EFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HhCCceeeeccccccccCchHHH----HHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 457899999999874 4332222 67888999998887654 567764 46778899998754
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=79.94 E-value=2 Score=36.93 Aligned_cols=12 Identities=0% Similarity=0.346 Sum_probs=7.9
Q ss_pred CCEEEEEcCCCC
Q 048227 75 RRVMQLSLNKTT 86 (179)
Q Consensus 75 ~~v~~l~L~~~~ 86 (179)
..++.|.+.+..
T Consensus 72 ~sLtsL~Lsnc~ 83 (426)
T PRK15386 72 NELTEITIENCN 83 (426)
T ss_pred CCCcEEEccCCC
Confidence 357888887643
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=79.24 E-value=2 Score=35.10 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=35.0
Q ss_pred ccCcccCCCEEeCcCCCCCCcChhh----hCCCCCCCEEeCCCCcC
Q 048227 137 SFGSLKQLKILNLGDNRFNDSILRY----LNTLTSLTTLILRFNNI 178 (179)
Q Consensus 137 ~l~~l~~L~~L~Ls~N~l~g~iP~~----l~~l~~L~~L~Ls~N~l 178 (179)
.+-.+++|+..+||.|.|....|+. ++.-+.|.+|.|++|-+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 4567899999999999998888865 45678899999999864
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.94 E-value=5 Score=35.56 Aligned_cols=62 Identities=31% Similarity=0.412 Sum_probs=33.0
Q ss_pred CCCCCcEEeccCCccCccccCcccccc-CcccCCCEEeCcCC--CCCCcChhhhCCC--CCCCEEeCCCCcC
Q 048227 112 PFEELQNLDLSGNRFEGLYENKTYDSF-GSLKQLKILNLGDN--RFNDSILRYLNTL--TSLTTLILRFNNI 178 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l-~~l~~L~~L~Ls~N--~l~g~iP~~l~~l--~~L~~L~Ls~N~l 178 (179)
+.+.+..+.|++|++.- +.. +.++ ..-++|+.|+|++| .+. --.++.++ ..|++|-+.+|.+
T Consensus 216 n~p~i~sl~lsnNrL~~-Ld~--~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH-LDA--LSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhc-hhh--hhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcc
Confidence 45667777777777653 211 0011 23367777788877 332 11222222 3466777777764
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.59 E-value=3.5 Score=32.05 Aligned_cols=32 Identities=34% Similarity=0.370 Sum_probs=13.4
Q ss_pred cCCCEEeCcCC-CCCCcChhhhCCCCCCCEEeC
Q 048227 142 KQLKILNLGDN-RFNDSILRYLNTLTSLTTLIL 173 (179)
Q Consensus 142 ~~L~~L~Ls~N-~l~g~iP~~l~~l~~L~~L~L 173 (179)
++|+.|+++.+ +||..=-..+..+++|+.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 44555555533 333222233444444444443
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.56 E-value=28 Score=16.98 Aligned_cols=11 Identities=27% Similarity=0.054 Sum_probs=6.4
Q ss_pred CCCCEEeCCCC
Q 048227 166 TSLTTLILRFN 176 (179)
Q Consensus 166 ~~L~~L~Ls~N 176 (179)
++|++|+|++.
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45666666554
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=34.84 E-value=3.8 Score=35.81 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=25.4
Q ss_pred cCcc-cCCCEEeCcCCCCCCc----ChhhhCCCCCCCEEeCCCCcC
Q 048227 138 FGSL-KQLKILNLGDNRFNDS----ILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 138 l~~l-~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+ ..++.++++.|.|+.. +...+..+.+++++.++.|.+
T Consensus 257 l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 257 LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 4444 5567777777777653 334455566777777777764
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.23 E-value=30 Score=30.90 Aligned_cols=64 Identities=27% Similarity=0.274 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCC--ccCccccCccccccCcc--cCCCEEeC
Q 048227 74 TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGN--RFEGLYENKTYDSFGSL--KQLKILNL 149 (179)
Q Consensus 74 ~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N--~l~g~iP~~~~~~l~~l--~~L~~L~L 149 (179)
...|.++.|++|. +..+.. +. +.-..-++|+.|+|++| .+... . ++.++ ..|++|-+
T Consensus 217 ~p~i~sl~lsnNr-L~~Ld~------~s------slsq~apklk~L~LS~N~~~~~~~--~----el~K~k~l~Leel~l 277 (585)
T KOG3763|consen 217 FPEILSLSLSNNR-LYHLDA------LS------SLSQIAPKLKTLDLSHNHSKISSE--S----ELDKLKGLPLEELVL 277 (585)
T ss_pred Ccceeeeecccch-hhchhh------hh------HHHHhcchhheeecccchhhhcch--h----hhhhhcCCCHHHeee
Confidence 3578888888888 652211 00 00123478999999999 44321 1 23322 45889999
Q ss_pred cCCCCCC
Q 048227 150 GDNRFND 156 (179)
Q Consensus 150 s~N~l~g 156 (179)
.+|.+.-
T Consensus 278 ~GNPlc~ 284 (585)
T KOG3763|consen 278 EGNPLCT 284 (585)
T ss_pred cCCcccc
Confidence 9998864
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=24.44 E-value=50 Score=27.79 Aligned_cols=13 Identities=31% Similarity=0.036 Sum_probs=6.6
Q ss_pred CCCCCCEEeCCCC
Q 048227 164 TLTSLTTLILRFN 176 (179)
Q Consensus 164 ~l~~L~~L~Ls~N 176 (179)
.+++|++|+++..
T Consensus 293 ~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 293 RCPSLRELDLSGC 305 (482)
T ss_pred hcCcccEEeeecC
Confidence 3455555555543
Done!