Query 048227
Match_columns 179
No_of_seqs 384 out of 2644
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:02:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 5.5E-24 1.9E-28 171.9 9.3 139 17-179 1-162 (313)
2 3rgz_A Protein brassinosteroid 99.9 1.2E-22 4E-27 181.6 9.5 143 14-178 4-163 (768)
3 4eco_A Uncharacterized protein 99.8 6.9E-21 2.4E-25 167.1 11.3 145 18-179 26-287 (636)
4 4ecn_A Leucine-rich repeat pro 99.8 4.8E-20 1.7E-24 167.0 11.1 146 16-179 263-529 (876)
5 4fcg_A Uncharacterized protein 99.7 4E-18 1.4E-22 138.4 2.9 140 16-178 21-195 (328)
6 1w8a_A SLIT protein; signaling 99.6 1.3E-14 4.3E-19 109.2 9.5 106 62-179 8-139 (192)
7 3e6j_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 108.8 10.6 114 59-179 16-148 (229)
8 3g39_A Variable lymphocyte rec 99.5 4.6E-14 1.6E-18 104.3 10.0 98 62-179 9-115 (170)
9 2o6s_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 104.5 10.5 106 61-178 6-136 (208)
10 3rgz_A Protein brassinosteroid 99.5 1.7E-14 5.8E-19 128.9 6.5 85 76-179 633-717 (768)
11 2o6r_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 102.2 9.9 113 61-179 6-137 (177)
12 3m19_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 109.1 8.0 66 110-179 79-144 (251)
13 2v9t_B SLIT homolog 2 protein 99.5 1.5E-13 5E-18 105.5 9.6 105 62-178 11-140 (220)
14 2o6q_A Variable lymphocyte rec 99.5 1.6E-13 5.3E-18 108.0 9.2 65 110-178 81-145 (270)
15 2v70_A SLIT-2, SLIT homolog 2 99.5 2E-13 6.7E-18 104.8 9.3 65 110-178 101-165 (220)
16 2wfh_A SLIT homolog 2 protein 99.5 3E-13 1E-17 101.9 9.3 105 62-178 10-138 (193)
17 2ifg_A High affinity nerve gro 99.4 5.6E-13 1.9E-17 108.1 9.7 97 62-179 8-116 (347)
18 2z81_A CD282 antigen, TOLL-lik 99.4 4.3E-13 1.5E-17 114.6 9.3 97 61-178 3-110 (549)
19 2r9u_A Variable lymphocyte rec 99.4 9.9E-13 3.4E-17 97.5 9.6 67 109-179 52-118 (174)
20 4b8c_D Glucose-repressible alc 99.4 1.9E-13 6.5E-18 121.8 5.8 64 110-179 266-329 (727)
21 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.2E-17 100.3 9.3 68 108-179 75-142 (220)
22 4g8a_A TOLL-like receptor 4; l 99.4 1.9E-12 6.5E-17 111.6 10.2 99 75-178 52-160 (635)
23 1w8a_A SLIT protein; signaling 99.3 3.2E-12 1.1E-16 95.9 9.0 99 66-179 4-115 (192)
24 2z80_A TOLL-like receptor 2, v 99.3 4E-12 1.4E-16 103.4 9.7 99 59-178 27-136 (353)
25 3v47_A TOLL-like receptor 5B a 99.3 3.3E-12 1.1E-16 106.7 8.6 109 60-179 6-142 (455)
26 1ogq_A PGIP-2, polygalacturona 99.3 8.2E-13 2.8E-17 106.2 3.4 94 75-179 76-187 (313)
27 2wfh_A SLIT homolog 2 protein 99.3 9.9E-12 3.4E-16 93.5 9.0 79 90-179 37-115 (193)
28 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 94.7 9.5 93 75-178 56-164 (220)
29 2r9u_A Variable lymphocyte rec 99.3 2.2E-11 7.4E-16 90.2 10.5 87 66-179 8-94 (174)
30 3m19_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 95.1 10.3 67 109-179 102-168 (251)
31 3g39_A Variable lymphocyte rec 99.3 1.8E-11 6E-16 90.3 9.7 80 78-179 12-91 (170)
32 3e6j_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 94.9 9.2 99 75-179 64-172 (229)
33 2o6r_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 90.0 9.6 66 110-179 48-113 (177)
34 2xot_A Amphoterin-induced prot 99.3 1.2E-11 4.2E-16 101.2 8.9 111 62-178 18-148 (361)
35 3vq2_A TLR4, TOLL-like recepto 99.3 1.5E-11 5.1E-16 106.3 9.1 99 75-178 32-140 (606)
36 2o6s_A Variable lymphocyte rec 99.3 3.7E-11 1.2E-15 90.7 10.1 67 109-179 95-161 (208)
37 2je0_A Acidic leucine-rich nuc 99.3 8.7E-12 3E-16 89.4 6.3 84 75-179 42-126 (149)
38 2ifg_A High affinity nerve gro 99.2 2.3E-11 7.7E-16 98.6 8.9 80 79-179 12-93 (347)
39 3rfs_A Internalin B, repeat mo 99.2 5.9E-11 2E-15 93.3 11.0 64 111-178 154-217 (272)
40 4g8a_A TOLL-like receptor 4; l 99.2 1.8E-11 6.2E-16 105.4 8.5 67 109-179 513-580 (635)
41 2je0_A Acidic leucine-rich nuc 99.2 2.2E-11 7.7E-16 87.2 7.6 85 75-179 17-101 (149)
42 3rfs_A Internalin B, repeat mo 99.2 5.5E-11 1.9E-15 93.5 10.5 66 110-179 129-194 (272)
43 3zyi_A Leucine-rich repeat-con 99.2 3.8E-11 1.3E-15 100.8 9.4 95 65-178 56-159 (452)
44 2ell_A Acidic leucine-rich nuc 99.2 1.5E-11 5.2E-16 89.8 5.6 84 75-179 49-133 (168)
45 3j0a_A TOLL-like receptor 5; m 99.2 2.6E-11 8.9E-16 109.3 7.6 103 64-178 15-135 (844)
46 3o6n_A APL1; leucine-rich repe 99.2 2.8E-11 9.4E-16 99.6 7.0 65 110-178 113-177 (390)
47 3oja_B Anopheles plasmodium-re 99.2 4.1E-11 1.4E-15 104.1 8.4 66 110-179 119-184 (597)
48 1ozn_A Reticulon 4 receptor; N 99.2 1.1E-10 3.9E-15 91.9 10.0 65 110-178 101-165 (285)
49 1ozn_A Reticulon 4 receptor; N 99.2 1.3E-10 4.3E-15 91.7 9.8 65 110-178 173-237 (285)
50 4ezg_A Putative uncharacterize 99.2 6.8E-11 2.3E-15 88.7 7.9 64 110-178 108-171 (197)
51 2id5_A Lingo-1, leucine rich r 99.2 9.3E-11 3.2E-15 98.7 9.5 110 64-178 12-140 (477)
52 3vq2_A TLR4, TOLL-like recepto 99.2 1.3E-10 4.5E-15 100.3 10.6 94 75-179 56-166 (606)
53 1dce_A Protein (RAB geranylger 99.2 5.9E-11 2E-15 103.1 8.4 83 75-179 463-546 (567)
54 1p9a_G Platelet glycoprotein I 99.2 1.3E-10 4.4E-15 92.5 9.7 67 109-179 119-185 (290)
55 4fcg_A Uncharacterized protein 99.2 8.7E-11 3E-15 95.0 8.9 92 75-177 206-312 (328)
56 3v47_A TOLL-like receptor 5B a 99.2 6.3E-11 2.1E-15 98.9 8.2 66 110-179 343-408 (455)
57 1wwl_A Monocyte differentiatio 99.2 2.8E-11 9.4E-16 97.1 5.7 74 95-177 106-184 (312)
58 2ell_A Acidic leucine-rich nuc 99.2 5.5E-11 1.9E-15 86.8 6.7 86 75-179 71-160 (168)
59 2o6q_A Variable lymphocyte rec 99.1 2.3E-10 7.8E-15 89.8 10.4 64 110-177 129-192 (270)
60 2z62_A TOLL-like receptor 4, v 99.1 1.3E-10 4.6E-15 91.1 9.0 66 110-179 96-162 (276)
61 4eco_A Uncharacterized protein 99.1 2.4E-11 8.4E-16 106.4 4.9 85 75-178 206-317 (636)
62 4ezg_A Putative uncharacterize 99.1 7.2E-11 2.5E-15 88.6 6.8 82 75-177 66-147 (197)
63 3t6q_A CD180 antigen; protein- 99.1 8.1E-11 2.8E-15 101.7 8.1 99 75-178 33-141 (606)
64 1p9a_G Platelet glycoprotein I 99.1 2.4E-10 8.1E-15 91.0 9.9 64 110-178 144-207 (290)
65 3zyj_A Leucine-rich repeat-con 99.1 2.2E-10 7.7E-15 95.8 10.2 95 65-178 45-148 (440)
66 2z62_A TOLL-like receptor 4, v 99.1 1.9E-10 6.6E-15 90.2 8.9 99 76-179 29-137 (276)
67 2xot_A Amphoterin-induced prot 99.1 2.3E-10 7.8E-15 93.6 9.4 99 75-179 64-176 (361)
68 1ziw_A TOLL-like receptor 3; i 99.1 1.6E-10 5.5E-15 101.2 9.0 67 109-179 92-158 (680)
69 2z66_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 91.8 8.1 65 110-178 171-235 (306)
70 3oja_B Anopheles plasmodium-re 99.1 2.9E-10 1E-14 98.7 10.2 67 109-179 94-160 (597)
71 1a9n_A U2A', U2A'; complex (nu 99.1 1.4E-10 4.7E-15 85.5 6.8 82 76-179 43-126 (176)
72 1dce_A Protein (RAB geranylger 99.1 1.5E-10 5.3E-15 100.4 8.1 80 76-179 442-521 (567)
73 2z66_A Variable lymphocyte rec 99.1 1.8E-10 6.1E-15 91.6 7.5 68 108-179 193-261 (306)
74 2ft3_A Biglycan; proteoglycan, 99.1 2.2E-10 7.5E-15 92.3 8.1 102 62-178 33-159 (332)
75 2xwt_C Thyrotropin receptor; s 99.1 1.1E-10 3.7E-15 89.9 6.0 95 75-176 31-140 (239)
76 1xku_A Decorin; proteoglycan, 99.1 2.2E-10 7.5E-15 92.1 7.9 67 108-179 210-276 (330)
77 3o6n_A APL1; leucine-rich repe 99.1 5.5E-10 1.9E-14 91.7 10.2 66 109-179 88-154 (390)
78 1xku_A Decorin; proteoglycan, 99.1 4.4E-10 1.5E-14 90.3 9.2 103 61-178 30-157 (330)
79 2z7x_B TOLL-like receptor 1, v 99.1 4.2E-10 1.4E-14 95.6 8.7 85 75-178 324-411 (520)
80 2ft3_A Biglycan; proteoglycan, 99.1 2E-10 6.8E-15 92.6 6.3 66 109-179 212-277 (332)
81 1a9n_A U2A', U2A'; complex (nu 99.1 3.6E-10 1.2E-14 83.3 7.2 82 75-179 19-101 (176)
82 2ast_B S-phase kinase-associat 99.0 6.6E-11 2.3E-15 95.0 3.3 99 64-176 38-152 (336)
83 2z7x_B TOLL-like receptor 1, v 99.0 2.2E-10 7.4E-15 97.4 6.5 64 109-179 64-128 (520)
84 4ecn_A Leucine-rich repeat pro 99.0 7.9E-11 2.7E-15 106.9 3.9 93 75-178 448-560 (876)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 4.4E-10 1.5E-14 96.7 8.4 64 109-179 95-159 (562)
86 4ay9_X Follicle-stimulating ho 99.0 1.8E-10 6E-15 93.8 5.5 99 62-179 9-117 (350)
87 3zyi_A Leucine-rich repeat-con 99.0 5.9E-10 2E-14 93.5 8.9 65 110-178 214-278 (452)
88 4glp_A Monocyte differentiatio 99.0 2.6E-10 8.7E-15 91.2 6.3 63 112-178 143-209 (310)
89 2z63_A TOLL-like receptor 4, v 99.0 5.6E-10 1.9E-14 95.4 8.8 99 75-178 28-136 (570)
90 2z63_A TOLL-like receptor 4, v 99.0 4.7E-10 1.6E-14 95.9 8.1 65 110-178 466-530 (570)
91 3t6q_A CD180 antigen; protein- 99.0 5.2E-10 1.8E-14 96.6 8.2 65 110-178 101-165 (606)
92 1ziw_A TOLL-like receptor 3; i 99.0 9.8E-10 3.3E-14 96.2 9.9 65 110-178 117-183 (680)
93 3zyj_A Leucine-rich repeat-con 99.0 5.4E-10 1.8E-14 93.5 7.8 93 75-178 185-291 (440)
94 1wwl_A Monocyte differentiatio 99.0 1.7E-10 5.8E-15 92.4 4.5 65 110-178 169-240 (312)
95 2id5_A Lingo-1, leucine rich r 99.0 6E-10 2E-14 93.8 8.0 68 108-179 98-165 (477)
96 3oja_A Leucine-rich immune mol 99.0 7.5E-10 2.6E-14 94.2 8.6 101 64-179 110-227 (487)
97 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 1E-09 3.5E-14 94.4 8.9 65 110-179 399-463 (562)
98 2z81_A CD282 antigen, TOLL-lik 99.0 6.2E-10 2.1E-14 95.0 5.8 84 75-177 50-134 (549)
99 3j0a_A TOLL-like receptor 5; m 98.9 1.1E-09 3.6E-14 98.8 7.3 67 109-179 92-161 (844)
100 4b8c_D Glucose-repressible alc 98.9 8.6E-10 2.9E-14 98.3 5.7 143 18-179 128-306 (727)
101 3o53_A Protein LRIM1, AGAP0063 98.9 2E-09 6.9E-14 86.3 7.1 98 75-179 144-250 (317)
102 4glp_A Monocyte differentiatio 98.9 2.2E-09 7.5E-14 85.8 7.0 76 92-179 232-307 (310)
103 4fmz_A Internalin; leucine ric 98.9 2.2E-09 7.6E-14 86.5 6.8 64 110-179 283-346 (347)
104 3oja_A Leucine-rich immune mol 98.9 2.3E-09 7.7E-14 91.2 6.4 61 114-178 120-181 (487)
105 1h6t_A Internalin B; cell adhe 98.9 6.9E-09 2.4E-13 82.5 8.6 62 110-179 130-191 (291)
106 2z80_A TOLL-like receptor 2, v 98.8 1.8E-08 6.1E-13 81.7 9.9 88 66-179 26-113 (353)
107 4fmz_A Internalin; leucine ric 98.8 1.1E-08 3.7E-13 82.4 8.4 65 109-179 260-324 (347)
108 1xeu_A Internalin C; cellular 98.8 2E-08 6.9E-13 78.7 9.3 58 114-179 106-163 (263)
109 1xeu_A Internalin C; cellular 98.8 6.2E-09 2.1E-13 81.6 6.1 87 75-178 85-184 (263)
110 1m9s_A Internalin B; cell inva 98.8 1.8E-08 6E-13 88.2 9.3 62 110-179 127-188 (605)
111 3o53_A Protein LRIM1, AGAP0063 98.8 1.7E-08 5.7E-13 80.9 8.4 61 112-179 167-227 (317)
112 1h6u_A Internalin H; cell adhe 98.8 2E-08 6.8E-13 80.3 8.8 61 110-178 125-185 (308)
113 1h6u_A Internalin H; cell adhe 98.8 2.5E-08 8.7E-13 79.7 9.1 62 110-179 147-208 (308)
114 3cvr_A Invasion plasmid antige 98.8 5.6E-09 1.9E-13 90.8 5.5 91 64-179 49-153 (571)
115 1h6t_A Internalin B; cell adhe 98.8 2.1E-08 7.4E-13 79.6 8.5 62 110-179 108-169 (291)
116 2xwt_C Thyrotropin receptor; s 98.8 1.5E-08 5.3E-13 77.7 7.3 66 109-179 150-218 (239)
117 2ast_B S-phase kinase-associat 98.7 2.1E-09 7.2E-14 86.2 1.0 65 110-178 114-181 (336)
118 1ds9_A Outer arm dynein; leuci 98.7 1.5E-10 5.3E-15 86.8 -5.5 59 114-178 93-152 (198)
119 1ds9_A Outer arm dynein; leuci 98.7 3.9E-10 1.3E-14 84.6 -3.3 81 75-179 48-128 (198)
120 3rw6_A Nuclear RNA export fact 98.7 2.9E-10 9.9E-15 90.1 -4.5 62 112-179 168-233 (267)
121 3bz5_A Internalin-J, INLJ; leu 98.7 3.1E-08 1.1E-12 83.6 7.4 67 110-179 282-352 (457)
122 1m9s_A Internalin B; cell inva 98.7 5.8E-08 2E-12 84.9 9.3 88 75-179 65-166 (605)
123 1jl5_A Outer protein YOPM; leu 98.7 5.7E-08 1.9E-12 81.9 8.8 60 110-179 149-208 (454)
124 1o6v_A Internalin A; bacterial 98.7 3.2E-08 1.1E-12 83.2 6.9 61 110-178 327-387 (466)
125 2ca6_A RAN GTPase-activating p 98.6 1.2E-08 3.9E-13 83.8 3.5 65 110-178 212-286 (386)
126 3rw6_A Nuclear RNA export fact 98.6 3.1E-08 1.1E-12 78.3 5.4 56 111-172 193-257 (267)
127 3bz5_A Internalin-J, INLJ; leu 98.6 8.9E-08 3E-12 80.8 8.5 60 110-179 81-140 (457)
128 1o6v_A Internalin A; bacterial 98.6 1E-07 3.5E-12 80.1 8.8 61 110-178 86-146 (466)
129 2ca6_A RAN GTPase-activating p 98.6 1E-08 3.5E-13 84.1 2.2 42 111-156 91-136 (386)
130 3goz_A Leucine-rich repeat-con 98.6 9.7E-09 3.3E-13 83.8 1.0 62 114-179 80-151 (362)
131 3cvr_A Invasion plasmid antige 98.6 1.4E-07 4.7E-12 82.0 8.3 55 113-179 139-193 (571)
132 3g06_A SSPH2 (leucine-rich rep 98.6 1.8E-07 6.1E-12 82.1 8.8 58 113-179 240-297 (622)
133 1jl5_A Outer protein YOPM; leu 98.5 2.2E-07 7.5E-12 78.3 8.6 85 75-178 153-249 (454)
134 3goz_A Leucine-rich repeat-con 98.5 2.1E-08 7.1E-13 81.8 1.4 90 75-179 22-122 (362)
135 3g06_A SSPH2 (leucine-rich rep 98.5 2E-08 6.9E-13 88.1 1.3 104 46-178 11-133 (622)
136 1z7x_W Ribonuclease inhibitor; 98.4 2.5E-08 8.6E-13 83.1 -0.1 66 110-179 337-411 (461)
137 4ay9_X Follicle-stimulating ho 98.3 1.1E-06 3.6E-11 71.3 6.3 85 68-179 7-93 (350)
138 3un9_A NLR family member X1; l 98.2 3.2E-07 1.1E-11 75.6 1.9 65 111-179 180-252 (372)
139 1z7x_W Ribonuclease inhibitor; 98.2 1.3E-07 4.4E-12 78.8 -1.2 60 115-178 314-382 (461)
140 3un9_A NLR family member X1; l 98.1 8.2E-07 2.8E-11 73.1 2.9 64 112-179 153-224 (372)
141 3sb4_A Hypothetical leucine ri 98.0 1.3E-05 4.4E-10 64.3 6.7 83 75-178 226-309 (329)
142 3ogk_B Coronatine-insensitive 97.9 3E-06 1E-10 72.6 1.6 63 113-179 462-526 (592)
143 3rfe_A Platelet glycoprotein I 97.7 8.2E-05 2.8E-09 52.2 6.4 37 115-155 32-68 (130)
144 1io0_A Tropomodulin; LRR prote 97.7 2.3E-05 7.9E-10 58.0 3.4 61 114-178 93-163 (185)
145 1io0_A Tropomodulin; LRR prote 97.6 3.2E-05 1.1E-09 57.3 3.3 91 73-179 34-136 (185)
146 2ra8_A Uncharacterized protein 97.6 1.4E-05 4.9E-10 65.6 0.9 67 112-179 250-320 (362)
147 3ogk_B Coronatine-insensitive 97.6 2.2E-05 7.5E-10 67.2 1.9 63 112-178 162-232 (592)
148 3sb4_A Hypothetical leucine ri 97.5 0.00024 8.3E-09 56.7 7.1 58 113-175 225-283 (329)
149 3e4g_A ATP synthase subunit S, 97.4 6.8E-05 2.3E-09 55.5 2.9 84 75-177 61-150 (176)
150 2p1m_B Transport inhibitor res 97.4 2.6E-05 9E-10 66.7 0.6 62 113-178 455-518 (594)
151 2p1m_B Transport inhibitor res 97.3 5.8E-05 2E-09 64.5 0.9 63 112-179 430-494 (594)
152 3rfe_A Platelet glycoprotein I 96.5 0.0026 8.8E-08 44.4 4.2 55 118-178 12-67 (130)
153 3e4g_A ATP synthase subunit S, 96.3 0.0018 6.1E-08 47.8 2.4 62 114-179 61-128 (176)
154 4fdw_A Leucine rich hypothetic 96.1 0.016 5.6E-07 47.8 7.4 64 108-178 294-357 (401)
155 4fdw_A Leucine rich hypothetic 95.9 0.025 8.7E-07 46.6 7.9 64 107-176 173-236 (401)
156 2ra8_A Uncharacterized protein 95.5 0.0079 2.7E-07 49.1 3.3 68 112-179 217-292 (362)
157 1pgv_A TMD-1, tropomodulin TMD 95.5 0.0092 3.1E-07 44.8 3.2 91 74-176 40-136 (197)
158 1pgv_A TMD-1, tropomodulin TMD 94.5 0.029 9.9E-07 42.0 3.6 93 74-177 69-168 (197)
159 4fs7_A Uncharacterized protein 93.5 0.1 3.5E-06 42.3 5.3 62 109-176 315-376 (394)
160 4gt6_A Cell surface protein; l 93.4 0.21 7.2E-06 40.5 7.1 64 108-177 305-368 (394)
161 4h09_A Hypothetical leucine ri 93.4 0.14 4.8E-06 41.1 6.0 63 108-176 280-343 (379)
162 4h09_A Hypothetical leucine ri 90.2 0.75 2.6E-05 36.7 6.9 63 109-176 258-320 (379)
163 4gt6_A Cell surface protein; l 89.1 1.3 4.3E-05 35.8 7.4 63 108-176 282-344 (394)
164 4fs7_A Uncharacterized protein 88.1 1 3.5E-05 36.3 6.2 62 109-176 292-353 (394)
165 2lz0_A Uncharacterized protein 30.3 66 0.0023 20.5 3.9 40 107-151 13-52 (100)
166 3ox7_P MH027; urokinase-type p 21.5 22 0.00076 16.2 0.2 9 60-69 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=5.5e-24 Score=171.89 Aligned_cols=139 Identities=24% Similarity=0.424 Sum_probs=114.7
Q ss_pred cCChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCC--ccceEeCCCC--CCEEEEEcCCCCCCCC--
Q 048227 17 KACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDD--WEGVKCSATT--RRVMQLSLNKTTKFND-- 90 (179)
Q Consensus 17 ~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~--w~Gv~C~~~~--~~v~~l~L~~~~~l~~-- 90 (179)
+.|.++|++||++||+++. +|. .+.+|... .+|| . |.||+|+... ++|+.|+|+++. +.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~-----~~~--~l~~W~~~-----~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~-l~~~~ 66 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLG-----NPT--TLSSWLPT-----TDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPY 66 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTT-----CCG--GGTTCCTT-----SCTT-TTCSTTEEECCSSSCCCEEEEEEECCC-CSSCE
T ss_pred CCCCHHHHHHHHHHHHhcC-----Ccc--cccCCCCC-----CCCC-cCCCcceEeCCCCCCceEEEEECCCCC-ccCCc
Confidence 3589999999999999997 765 68899763 6899 8 9999998644 799999999998 873
Q ss_pred ----------------CC-cCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC
Q 048227 91 ----------------SN-YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR 153 (179)
Q Consensus 91 ----------------~~-~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~ 153 (179)
+. .|.+.|.+|.. |+++++|++|++++|++++.+|. .+..+++|++|++++|+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~------l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSE
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChh------HhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCc
Confidence 11 25555555543 67788889999998888888888 88889999999999999
Q ss_pred CCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 154 FNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 154 l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+++.+|..++++++|++|+|++|+++
T Consensus 137 l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 137 LSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred cCCcCChHHhcCCCCCeEECcCCccc
Confidence 99889988999999999999988763
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.2e-22 Score=181.64 Aligned_cols=143 Identities=26% Similarity=0.323 Sum_probs=94.1
Q ss_pred hcccCChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCCccceEeCCCCCCEEEEEcCCCCCCCCC--
Q 048227 14 HGYKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFNDS-- 91 (179)
Q Consensus 14 ~~~~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~w~Gv~C~~~~~~v~~l~L~~~~~l~~~-- 91 (179)
++++++.++|++||++||+++. ||. .+.+|..+ .+|| .|.||+|+ .++|++|+|++.. +.+.
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~-----~~~--~l~~W~~~-----~~~C-~w~gv~C~--~~~v~~L~L~~~~-l~g~~~ 67 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLP-----DKN--LLPDWSSN-----KNPC-TFDGVTCR--DDKVTSIDLSSKP-LNVGFS 67 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCS-----CTT--SSTTCCTT-----SCGG-GSTTEEEE--TTEEEEEECTTSC-CCEEHH
T ss_pred CccccCCHHHHHHHHHHHhhCC-----Ccc--cccCCCCC-----CCCc-CCcceEEC--CCcEEEEECCCCC-cCCccC
Confidence 4455567899999999999997 776 68999853 6899 99999998 5899999999988 7621
Q ss_pred --------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCc
Q 048227 92 --------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS 157 (179)
Q Consensus 92 --------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~ 157 (179)
..+.+.|.+| .+..++.+++|++|+|++|.++|.+|.. ..++++++|++|+|++|++++.
T Consensus 68 ~l~~~l~~L~~L~~l~~~~~~~~~----l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~ 141 (768)
T 3rgz_A 68 AVSSSLLSLTGLESLFLSNSHING----SVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFP 141 (768)
T ss_dssp HHHHHTTTCTTCCEEECTTSCEEE----CCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECC
T ss_pred ccChhHhccCcccccCCcCCCcCC----CchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCc
Confidence 1122222221 0134666777777777777777766531 1355666666666666666666
Q ss_pred Chhhh-CCCCCCCEEeCCCCcC
Q 048227 158 ILRYL-NTLTSLTTLILRFNNI 178 (179)
Q Consensus 158 iP~~l-~~l~~L~~L~Ls~N~l 178 (179)
+|..+ .++++|++|+|++|++
T Consensus 142 ~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 142 GKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp SSCCSCCCCTTCSEEECCSSCC
T ss_pred CCHHHhccCCCCCEEECCCCcc
Confidence 65544 5555666666655554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=6.9e-21 Score=167.11 Aligned_cols=145 Identities=17% Similarity=0.218 Sum_probs=111.4
Q ss_pred CChHHHHHHHHHHHhhccccccCCCCCc-------CCCCCCCCCCCCCCCCCCCc---cceEeCCCCCCEEEEEcCCCCC
Q 048227 18 ACLETERTALLELKSFFVSVSDIGYDHE-------ILRSWGGDDEGMSSDCCDDW---EGVKCSATTRRVMQLSLNKTTK 87 (179)
Q Consensus 18 ~~~~~~~~aLl~~k~~l~~~~~~~~~~~-------~l~~W~~~~~~~s~~~C~~w---~Gv~C~~~~~~v~~l~L~~~~~ 87 (179)
+....|++||.++|.++. ++.+. ...+|... .+|| .| .||+|+. .+||++|+|++++
T Consensus 26 ~~~~~d~~aL~~~~~~~~-----~~~w~~~~~~~~~~~~W~~~-----~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~- 92 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALN-----GKNWSQQGFGTQPGANWNFN-----KELD-MWGAQPGVSLNS-NGRVTGLSLEGFG- 92 (636)
T ss_dssp CHHHHHHHHHHHHHHHTT-----GGGCCCCC------CCCCCS-----SCGG-GTTCCTTEEECT-TCCEEEEECTTSC-
T ss_pred hhHHHHHHHHHHHHHHcC-----CCCcccCCcCCccCCCCCCC-----CCcc-cccCCCCeEEcC-CCCEEEEEecCcc-
Confidence 344679999999999986 44432 13379873 6899 99 9999986 4899999999998
Q ss_pred CC----------------CCCcCcc------CC---------------------------CCCccc--------------
Q 048227 88 FN----------------DSNYNLF------YG---------------------------GPSASL-------------- 104 (179)
Q Consensus 88 l~----------------~~~~n~~------~g---------------------------~ip~~~-------------- 104 (179)
+. ++..|.+ .| .+|...
T Consensus 93 l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~ 172 (636)
T 4eco_A 93 ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172 (636)
T ss_dssp CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence 65 2344433 11 000000
Q ss_pred ------------------------cCCccCCCCCCCcEEeccCCccCcc-----------------ccCccccccC--cc
Q 048227 105 ------------------------LNMSLFYPFEELQNLDLSGNRFEGL-----------------YENKTYDSFG--SL 141 (179)
Q Consensus 105 ------------------------~~~~~l~~l~~L~~L~Ls~N~l~g~-----------------iP~~~~~~l~--~l 141 (179)
.-+..++++++|++|+|++|+|+|. +|. .++ ++
T Consensus 173 ~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l 248 (636)
T 4eco_A 173 KSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNL 248 (636)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGC
T ss_pred cccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhccc
Confidence 0123477899999999999999996 898 888 99
Q ss_pred cCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc-CC
Q 048227 142 KQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN-IE 179 (179)
Q Consensus 142 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~-lt 179 (179)
++|++|+|++|++.|.+|+.++++++|++|++++|+ ++
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 999999999999999999999999999999999997 64
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=4.8e-20 Score=167.03 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=112.6
Q ss_pred ccCChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCC--CCCc------------cceEeCCCCCCEEEEE
Q 048227 16 YKACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDC--CDDW------------EGVKCSATTRRVMQLS 81 (179)
Q Consensus 16 ~~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~--C~~w------------~Gv~C~~~~~~v~~l~ 81 (179)
.+++..+|++||++||+++. +| +|.........+| | .| .||+|+. .+||++|+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~-----~~------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~ 329 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD-----GK------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLS 329 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-----GG------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred ccccchHHHHHHHHHHHHcC-----CC------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEE
Confidence 44556789999999999997 55 4544210000244 9 99 9999987 68999999
Q ss_pred cCCCCCCC----------------CC-CcCccCCCCCcccc---------------------------------------
Q 048227 82 LNKTTKFN----------------DS-NYNLFYGGPSASLL--------------------------------------- 105 (179)
Q Consensus 82 L~~~~~l~----------------~~-~~n~~~g~ip~~~~--------------------------------------- 105 (179)
|++++ +. ++ +.|.+.|..|....
T Consensus 330 Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l 408 (876)
T 4ecn_A 330 LAGFG-AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408 (876)
T ss_dssp CTTTC-CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred CccCC-CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence 99998 75 24 55655555321100
Q ss_pred -------------------------------CCccCCCCCCCcEEeccCCccCc-----------------cccCccccc
Q 048227 106 -------------------------------NMSLFYPFEELQNLDLSGNRFEG-----------------LYENKTYDS 137 (179)
Q Consensus 106 -------------------------------~~~~l~~l~~L~~L~Ls~N~l~g-----------------~iP~~~~~~ 137 (179)
-+..++++++|++|+|++|+|+| .+|. .
T Consensus 409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~ 484 (876)
T 4ecn_A 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----E 484 (876)
T ss_dssp HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----C
T ss_pred hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----h
Confidence 12347889999999999999999 4888 8
Q ss_pred cC--cccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc-CC
Q 048227 138 FG--SLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN-IE 179 (179)
Q Consensus 138 l~--~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~-lt 179 (179)
++ ++++|++|+|++|++.|.+|..++++++|++|+|++|+ |+
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 77 99999999999999999999999999999999999997 53
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=4e-18 Score=138.45 Aligned_cols=140 Identities=17% Similarity=0.209 Sum_probs=82.8
Q ss_pred ccCChHHHHHHHHHHHhhccccccCCCCCcCCCCCC---CCCCCCCCCCCCCccceEeCC--------CCCCEEEEEcCC
Q 048227 16 YKACLETERTALLELKSFFVSVSDIGYDHEILRSWG---GDDEGMSSDCCDDWEGVKCSA--------TTRRVMQLSLNK 84 (179)
Q Consensus 16 ~~~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~---~~~~~~s~~~C~~w~Gv~C~~--------~~~~v~~l~L~~ 84 (179)
..++..+|++||++||..+. .++.+ ....|. .. ..++| .|.|+.|+. ...+|+.|+|++
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~----~~~~~-~~~~w~~~~~~----~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~ 90 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYN----ADRNR-WHSAWRQANSN----NPQIE-TRTGRALKATADLLEDATQPGRVALELRS 90 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHH----HCCTT-HHHHHHHHTTT----CTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEES
T ss_pred ccccCchHHHHHHHHHHhcc----CCchh-hhhhhcccccc----ccccc-ccCCcchhhhHHHHhcccccceeEEEccC
Confidence 34456789999999999884 25543 567884 21 26889 999999952 246899999999
Q ss_pred CCCCCCC---------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeC
Q 048227 85 TTKFNDS---------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNL 149 (179)
Q Consensus 85 ~~~l~~~---------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~L 149 (179)
+. +..+ .+|.+. .+|. .++.+++|++|+|++|+++ .+|. .++.+++|++|++
T Consensus 91 n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~------~~~~l~~L~~L~Ls~n~l~-~lp~----~l~~l~~L~~L~L 157 (328)
T 4fcg_A 91 VP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPD------TMQQFAGLETLTLARNPLR-ALPA----SIASLNRLRELSI 157 (328)
T ss_dssp SC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCS------CGGGGTTCSEEEEESCCCC-CCCG----GGGGCTTCCEEEE
T ss_pred CC-chhcChhhhhCCCCCEEECCCCCcc-chhH------HHhccCCCCEEECCCCccc-cCcH----HHhcCcCCCEEEC
Confidence 98 7621 122222 2222 1444555555555555555 3454 5555555555555
Q ss_pred cCCCCCCcChhhhCC---------CCCCCEEeCCCCcC
Q 048227 150 GDNRFNDSILRYLNT---------LTSLTTLILRFNNI 178 (179)
Q Consensus 150 s~N~l~g~iP~~l~~---------l~~L~~L~Ls~N~l 178 (179)
++|++.+.+|..++. +++|++|+|++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc
Confidence 555555555554433 55555555555544
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=1.3e-14 Score=109.18 Aligned_cols=106 Identities=28% Similarity=0.373 Sum_probs=79.5
Q ss_pred CCCccceEeCCC---------CCCEEEEEcCCCCCCCCC-----------------CcCccCCCCCccccCCccCCCCCC
Q 048227 62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDS-----------------NYNLFYGGPSASLLNMSLFYPFEE 115 (179)
Q Consensus 62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~-----------------~~n~~~g~ip~~~~~~~~l~~l~~ 115 (179)
| .|..+.|... ...++.|+++++. +..+ .+|.+.+..| ..|..+++
T Consensus 8 C-~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~ 79 (192)
T 1w8a_A 8 C-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEP------NAFEGASH 79 (192)
T ss_dssp E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCT------TTTTTCTT
T ss_pred E-CCCEEEcCCCCcCcCccCCCCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCH------hHcCCccc
Confidence 6 7888888642 1367888888887 6632 2233333222 34777888
Q ss_pred CcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 116 L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
|++|+|++|++++..|. .+..+++|++|+|++|++++.+|..+..+++|++|+|++|+++
T Consensus 80 L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 80 IQELQLGENKIKEISNK----MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEEECCSCCCCEECSS----SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88888888888886666 6888889999999999999888888888899999999988764
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=4.7e-14 Score=108.84 Aligned_cols=114 Identities=25% Similarity=0.316 Sum_probs=80.5
Q ss_pred CCCCCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEE
Q 048227 59 SDCCDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNL 119 (179)
Q Consensus 59 ~~~C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L 119 (179)
...| .|.+|.|... ...++.|+|+++. +..+....|.+--.. ..+....|..+++|++|
T Consensus 16 ~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 16 QCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 5789 9999999752 2467889999888 773322111110000 01112336778888888
Q ss_pred eccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 120 DLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 120 ~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+|++|++++..+. .+..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|+
T Consensus 94 ~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 94 DLGTNQLTVLPSA----VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp ECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCccChh----HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 8888888875554 5788888888888888888 78888888888889988888774
No 8
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=4.6e-14 Score=104.28 Aligned_cols=98 Identities=28% Similarity=0.358 Sum_probs=79.2
Q ss_pred CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccC
Q 048227 62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYEN 132 (179)
Q Consensus 62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~ 132 (179)
| .|+.+.|... ...++.|+|+++. ++ +..|. .|..+++|++|+|++|+|++..|.
T Consensus 9 C-~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~-i~--------~~~~~------~~~~l~~L~~L~Ls~N~l~~l~~~ 72 (170)
T 3g39_A 9 C-SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQ-IT--------KLEPG------VFDRLTQLTRLDLDNNQLTVLPAG 72 (170)
T ss_dssp E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSC-CC--------CCCTT------TTTTCTTCSEEECCSSCCCCCCTT
T ss_pred c-CCCEEEeCCCCcCccCccCCCCCcEEEcCCCc-CC--------ccChh------hhcCcccCCEEECCCCCcCccChh
Confidence 6 6888888642 1356677777777 66 44333 388899999999999999985555
Q ss_pred ccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 133 KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 133 ~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|..+++|++|+|++|+|++..|..|.++++|++|+|++|+++
T Consensus 73 ----~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 73 ----VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6789999999999999999777778999999999999999874
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.2e-13 Score=104.48 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=58.3
Q ss_pred CCCCccceEeCCC---------CCCEEEEEcCCCCCCCCCC----------------cCccCCCCCccccCCccCCCCCC
Q 048227 61 CCDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSN----------------YNLFYGGPSASLLNMSLFYPFEE 115 (179)
Q Consensus 61 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~----------------~n~~~g~ip~~~~~~~~l~~l~~ 115 (179)
.| .|.+|.|... ..+++.|+++++. +..+. +|.+.+ +| ...|..+++
T Consensus 6 ~C-~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-----~~~~~~l~~ 77 (208)
T 2o6s_A 6 SC-SGTTVECYSQGRTSVPTGIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQS-LP-----NGVFNKLTS 77 (208)
T ss_dssp EE-ETTEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCC-CC-----TTTTTTCTT
T ss_pred EE-CCCEEEecCCCccCCCCCCCCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCc-cC-----hhhcCCCCC
Confidence 47 8999999752 2368889999888 76332 233321 11 122445555
Q ss_pred CcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 116 L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
|++|++++|++++..+. .+..+++|++|++++|++++..|..+.++++|++|++++|++
T Consensus 78 L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNG----VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp CCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCEEECCCCcCCccCHh----HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 66666666655543332 345555555555555555544444445555555555555544
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.50 E-value=1.7e-14 Score=128.87 Aligned_cols=85 Identities=27% Similarity=0.380 Sum_probs=78.2
Q ss_pred CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227 76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~ 155 (179)
.++.|||+++. ++ |.+|.+ +++++.|++|+|++|+++|.||. .++.+++|++|||++|+++
T Consensus 633 ~L~~LdLs~N~-l~--------g~ip~~------l~~l~~L~~L~Ls~N~l~g~ip~----~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 633 SMMFLDMSYNM-LS--------GYIPKE------IGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CCCEEECCSSC-CB--------SCCCGG------GGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCE
T ss_pred cccEEECcCCc-cc--------ccCCHH------HhccccCCEEeCcCCccCCCCCh----HHhCCCCCCEEECCCCccc
Confidence 46677777777 66 999976 88899999999999999999999 9999999999999999999
Q ss_pred CcChhhhCCCCCCCEEeCCCCcCC
Q 048227 156 DSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 156 g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
|.||..++++++|++|+|++|+|+
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CcCChHHhCCCCCCEEECcCCccc
Confidence 999999999999999999999874
No 11
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.1e-13 Score=102.21 Aligned_cols=113 Identities=23% Similarity=0.327 Sum_probs=73.1
Q ss_pred CCCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCcc----------ccCCccCCCCCCCcEEec
Q 048227 61 CCDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDL 121 (179)
Q Consensus 61 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~L 121 (179)
.| .|.+|.|... ...++.|+++++. +..+....|.+--... .+....|..+++|++|++
T Consensus 6 ~C-~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 6 SC-SGTEIRCNSKGLTSVPTGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp EE-ETTEEECCSSCCSSCCTTCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred Ee-CCCEEEecCCCCccCCCCCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 37 8999999752 1467888998887 7633221111100000 011223567778888888
Q ss_pred cCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 122 SGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 122 s~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++|++++..|. .+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 84 ~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNG----VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHH----HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 88888875554 5677888888888888888555555677888888888888763
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=6.4e-14 Score=109.12 Aligned_cols=66 Identities=32% Similarity=0.424 Sum_probs=41.9
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
|..+++|++|+|++|++++..|. .+..+++|++|+|++|++++..|..+..+++|++|+|++|+|+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 45566666666666666654444 5566666777777777776555555666777777777777653
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.5e-13 Score=105.47 Aligned_cols=105 Identities=23% Similarity=0.298 Sum_probs=62.4
Q ss_pred CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCC----------------cCccCCCCCccccCCccCCCCCCC
Q 048227 62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSN----------------YNLFYGGPSASLLNMSLFYPFEEL 116 (179)
Q Consensus 62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~----------------~n~~~g~ip~~~~~~~~l~~l~~L 116 (179)
| .|..|.|... ...++.|+++++. +..+. +|.+.+.. +..|..+++|
T Consensus 11 C-~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~------~~~~~~l~~L 82 (220)
T 2v9t_B 11 C-SNNIVDCRGKGLTEIPTNLPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELA------PDAFQGLRSL 82 (220)
T ss_dssp E-ETTEEECTTSCCSSCCSSCCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEEC------TTTTTTCSSC
T ss_pred E-CCCEEEcCCCCcCcCCCccCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcC------HHHhhCCcCC
Confidence 6 7888999742 1367888998887 76332 23222221 2335566666
Q ss_pred cEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 117 QNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 117 ~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++|+|++|+++. +|+. .+..+++|++|+|++|++++..|..|..+++|++|+|++|+|
T Consensus 83 ~~L~Ls~N~l~~-l~~~---~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 83 NSLVLYGNKITE-LPKS---LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp CEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCc-cCHh---HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 666666666665 3331 345566666666666666655556666666666666666654
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=1.6e-13 Score=108.03 Aligned_cols=65 Identities=29% Similarity=0.434 Sum_probs=41.1
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
|..+++|++|++++|++++..+. .+..+++|++|++++|++++..|..++.+++|++|+|++|++
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC
Confidence 34555666666666666653333 456666677777777777665556666777777777777765
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=2e-13 Score=104.77 Aligned_cols=65 Identities=34% Similarity=0.409 Sum_probs=31.6
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
|..+++|++|+|++|++++..|. .+..+++|++|+|++|++++..|..|..+++|++|+|++|.+
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGND----SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTT----SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred hcCCcCCCEEECCCCcCCeECHh----HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 33444444444444444443343 444455555555555555544455555555555555555543
No 16
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=3e-13 Score=101.86 Aligned_cols=105 Identities=28% Similarity=0.327 Sum_probs=62.1
Q ss_pred CCCccceEeCCC---------CCCEEEEEcCCCCCCCCC---------------CcCccCCCCCccccCCccCCCCCCCc
Q 048227 62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDS---------------NYNLFYGGPSASLLNMSLFYPFEELQ 117 (179)
Q Consensus 62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~---------------~~n~~~g~ip~~~~~~~~l~~l~~L~ 117 (179)
| .|..|.|... ...++.|+++++. ++.+ .+|.+.+. .+..|..+++|+
T Consensus 10 C-~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i------~~~~f~~l~~L~ 81 (193)
T 2wfh_A 10 C-LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTL------SNQSFSNMTQLL 81 (193)
T ss_dssp E-ETTEEECTTSCCSSCCSCCCTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCC------CTTTTTTCTTCC
T ss_pred e-CCCEEEcCCCCCCcCCCCCCCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEe------CHhHccCCCCCC
Confidence 5 6777888642 1357888888887 6522 12222211 112355666666
Q ss_pred EEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 118 NLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 118 ~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+|+|++|++++..|. .|..+++|++|+|++|++++..+..|..+++|++|+|++|.+
T Consensus 82 ~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 82 TLILSYNRLRCIPPR----TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EEECCSSCCCBCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCCccCEeCHH----HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 666666666665444 566666666666666666644444566666666666666654
No 17
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=5.6e-13 Score=108.12 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=75.8
Q ss_pred CCCccceEeCCC-----------CCCEEEEEcCC-CCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCcc
Q 048227 62 CDDWEGVKCSAT-----------TRRVMQLSLNK-TTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGL 129 (179)
Q Consensus 62 C~~w~Gv~C~~~-----------~~~v~~l~L~~-~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ 129 (179)
| .|..|.|... ..+++.|+|++ +. +. +..| ..|..|++|++|+|++|+|++.
T Consensus 8 C-~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~-l~--------~~~~------~~~~~l~~L~~L~l~~N~l~~~ 71 (347)
T 2ifg_A 8 H-GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQH-LQ--------HLEL------RDLRGLGELRNLTIVKSGLRFV 71 (347)
T ss_dssp S-SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS-CC--------EECG------GGSCSCCCCSEEECCSSCCCEE
T ss_pred c-cCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCC-CC--------CcCh------hHhccccCCCEEECCCCcccee
Confidence 8 9999999763 12367777775 66 65 2222 3378899999999999999997
Q ss_pred ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 130 YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 130 iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|. .|..|++|++|+|++|+|++..|..+..++ |++|+|.+|+|+
T Consensus 72 ~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 72 APD----AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CTT----GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CHH----HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777 889999999999999999965555555555 999999999874
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.42 E-value=4.3e-13 Score=114.60 Aligned_cols=97 Identities=28% Similarity=0.329 Sum_probs=68.8
Q ss_pred CCCCccceEeCCC-----------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCcc
Q 048227 61 CCDDWEGVKCSAT-----------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGL 129 (179)
Q Consensus 61 ~C~~w~Gv~C~~~-----------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ 129 (179)
.| .|.|+ |+.. ..+++.|+++++. ++ +..| ..|..+++|++|++++|++++.
T Consensus 3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~-l~--------~~~~------~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNK-IT--------YIGH------GDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSC-CC--------EECS------STTSSCTTCCEEECTTSCCCEE
T ss_pred cC-CCCce-EECCCCccccccccCCCCccEEECcCCc-cC--------ccCh------hhhhcCCcccEEECCCCCcCcc
Confidence 58 89998 8742 1368888888888 76 3222 2366677777777777777776
Q ss_pred ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 130 YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 130 iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
.|. .++.+++|++|++++|++++..|..++++++|++|+|++|++
T Consensus 66 ~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 66 EGD----AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp CTT----TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred Chh----hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 656 677777777777777777766666677777777777777765
No 19
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=9.9e-13 Score=97.53 Aligned_cols=67 Identities=28% Similarity=0.386 Sum_probs=58.5
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|..+++|++|+|++|+|++..+. .+..+++|++|+|++|+|++..|..|..+++|++|+|++|+++
T Consensus 52 ~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 52 VFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred HhcCCcCCCEEECCCCCCCccChh----HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 388899999999999999994444 5789999999999999999766666999999999999999874
No 20
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=1.9e-13 Score=121.81 Aligned_cols=64 Identities=30% Similarity=0.305 Sum_probs=50.8
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
|+.|++|++|+|++|+|+ .+|. .++.|++|++|+|++|.|+ .+|..|+++++|++|+|++|+|+
T Consensus 266 ~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLT-SLPA----ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGGGTTCCEEECTTSCCS-SCCS----SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred hhCCCCCCEEeCcCCcCC-ccCh----hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 566778888888888888 5777 7888888888888888886 77877888888888888888764
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=100.32 Aligned_cols=68 Identities=28% Similarity=0.274 Sum_probs=62.9
Q ss_pred ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
..|..+++|++|+|++|++++..|. .+..+++|++|+|++|++++..|..|..+++|++|+|++|+|+
T Consensus 75 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 75 GAFEGASGVNEILLTSNRLENVQHK----MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCGG----GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred HHhCCCCCCCEEECCCCccCccCHh----HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 3488899999999999999997776 7999999999999999999998999999999999999999875
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.37 E-value=1.9e-12 Score=111.55 Aligned_cols=99 Identities=19% Similarity=0.220 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCcc----------ccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL 144 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L 144 (179)
..++.|||+++. ++.+....|.+---.. .+.+..|.++++|++|+|++|++++..|. .|.++++|
T Consensus 52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG----GGTTCTTC
T ss_pred cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH----HhcCCCCC
Confidence 368999999998 8743332222110000 12223466777777777777777764444 56777777
Q ss_pred CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++|+|++|++++..|..|+++++|++|+|++|++
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 7777777777765555677777777777777765
No 23
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=3.2e-12 Score=95.95 Aligned_cols=99 Identities=23% Similarity=0.303 Sum_probs=78.2
Q ss_pred cceEeCCCCCCEEEEEcCCCCCCCCCC-------------cCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccC
Q 048227 66 EGVKCSATTRRVMQLSLNKTTKFNDSN-------------YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYEN 132 (179)
Q Consensus 66 ~Gv~C~~~~~~v~~l~L~~~~~l~~~~-------------~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~ 132 (179)
.+..|.. +.+++++++ +..++ +|.+.+..+ ...|..+++|++|+|++|++++.+|.
T Consensus 4 ~~C~C~~-----~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~ 72 (192)
T 1w8a_A 4 AMCHCEG-----TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISS-----DGLFGRLPHLVKLELKRNQLTGIEPN 72 (192)
T ss_dssp TTSEEET-----TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCC-----SCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred CCCEECC-----CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCC-----ccccccCCCCCEEECCCCCCCCcCHh
Confidence 3456653 478899988 76332 222221111 12377899999999999999998888
Q ss_pred ccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 133 KTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 133 ~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.+..+++|++|+|++|++++..|..|.++++|++|+|++|+|+
T Consensus 73 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 73 ----AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp ----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred ----HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 8999999999999999999988888999999999999999875
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.34 E-value=4e-12 Score=103.38 Aligned_cols=99 Identities=32% Similarity=0.386 Sum_probs=66.0
Q ss_pred CCCCCCccceEeCCC-----------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccC
Q 048227 59 SDCCDDWEGVKCSAT-----------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFE 127 (179)
Q Consensus 59 ~~~C~~w~Gv~C~~~-----------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~ 127 (179)
..+| .|.|+ |+.. ..+++.|+++++. +.. +|. ..+.++++|++|++++|+++
T Consensus 27 ~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~-i~~---------~~~-----~~~~~l~~L~~L~L~~n~l~ 89 (353)
T 2z80_A 27 SLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNR-ITY---------ISN-----SDLQRCVNLQALVLTSNGIN 89 (353)
T ss_dssp CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSC-CCE---------ECT-----TTTTTCTTCCEEECTTSCCC
T ss_pred CCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCc-Ccc---------cCH-----HHhccCCCCCEEECCCCccC
Confidence 4678 89998 7632 1367888888888 761 221 23566677777777777777
Q ss_pred ccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 128 GLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 128 g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..|. .++.+++|++|++++|++++..+..++++++|++|++++|++
T Consensus 90 ~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 136 (353)
T 2z80_A 90 TIEED----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136 (353)
T ss_dssp EECTT----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC
T ss_pred ccCHh----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC
Confidence 65555 667777777777777777754444467777777777777765
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.32 E-value=3.3e-12 Score=106.67 Aligned_cols=109 Identities=26% Similarity=0.304 Sum_probs=77.6
Q ss_pred CCCCCccc--eEeCCCC--------CCEEEEEcCCCCCCCCC----------------CcCccCCCCCccccCCccCCCC
Q 048227 60 DCCDDWEG--VKCSATT--------RRVMQLSLNKTTKFNDS----------------NYNLFYGGPSASLLNMSLFYPF 113 (179)
Q Consensus 60 ~~C~~w~G--v~C~~~~--------~~v~~l~L~~~~~l~~~----------------~~n~~~g~ip~~~~~~~~l~~l 113 (179)
..| .|.+ |.|+... .+++.|+|+++. +.++ ..|.+.+.+ .+..|..+
T Consensus 6 ~~c-~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i-----~~~~~~~l 78 (455)
T 3v47_A 6 SEC-SVIGYNAICINRGLHQVPELPAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVI-----RNNTFRGL 78 (455)
T ss_dssp -CC-EEETTEEECCSSCCSSCCCCCTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEE-----CTTTTTTC
T ss_pred cee-EEEccccCcCCCCcccCCCCCCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceE-----Cccccccc
Confidence 456 6665 7886522 468999999998 7632 122222222 22346778
Q ss_pred CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhh--hCCCCCCCEEeCCCCcCC
Q 048227 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY--LNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~Ls~N~lt 179 (179)
++|++|+|++|++++..|. .++.+++|++|++++|++++.+|.. ++++++|++|+|++|+++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 142 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETG----AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142 (455)
T ss_dssp TTCCEEECTTCTTCEECTT----TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred ccCCEEeCCCCccCccChh----hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC
Confidence 8888888888888887777 7888888888888888888777665 888888888888888764
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.30 E-value=8.2e-13 Score=106.21 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=79.3
Q ss_pred CCEEEEEcCC-CCCCC----------------CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccc
Q 048227 75 RRVMQLSLNK-TTKFN----------------DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDS 137 (179)
Q Consensus 75 ~~v~~l~L~~-~~~l~----------------~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~ 137 (179)
.+++.+++++ +. +. ++.+|.+.|.+|.. +.++++|++|++++|++++.+|. .
T Consensus 76 ~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~------~~~l~~L~~L~Ls~N~l~~~~p~----~ 144 (313)
T 1ogq_A 76 PYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF------LSQIKTLVTLDFSYNALSGTLPP----S 144 (313)
T ss_dssp TTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEECCGG------GGGCTTCCEEECCSSEEESCCCG----G
T ss_pred CCCCeeeCCCCCc-ccccCChhHhcCCCCCEEECcCCeeCCcCCHH------HhCCCCCCEEeCCCCccCCcCCh----H
Confidence 4577888874 54 43 12456666666654 78899999999999999999998 9
Q ss_pred cCcccCCCEEeCcCCCCCCcChhhhCCCC-CCCEEeCCCCcCC
Q 048227 138 FGSLKQLKILNLGDNRFNDSILRYLNTLT-SLTTLILRFNNIE 179 (179)
Q Consensus 138 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~-~L~~L~Ls~N~lt 179 (179)
++.+++|++|++++|+++|.+|..+++++ +|++|++++|+++
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 99999999999999999999999999998 9999999999863
No 27
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=9.9e-12 Score=93.49 Aligned_cols=79 Identities=32% Similarity=0.307 Sum_probs=68.4
Q ss_pred CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCC
Q 048227 90 DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT 169 (179)
Q Consensus 90 ~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~ 169 (179)
++.+|.+. .+|. .|..+++|++|+|++|++++..|. .|..+++|++|+|++|++++..|..|..+++|+
T Consensus 37 ~L~~n~i~-~ip~------~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 37 YLDGNQFT-LVPK------ELSNYKHLTLIDLSNNRISTLSNQ----SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp ECCSSCCC-SCCG------GGGGCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred ECCCCcCc-hhHH------HhhcccCCCEEECCCCcCCEeCHh----HccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence 34566665 5553 378899999999999999997666 899999999999999999988888999999999
Q ss_pred EEeCCCCcCC
Q 048227 170 TLILRFNNIE 179 (179)
Q Consensus 170 ~L~Ls~N~lt 179 (179)
+|+|++|+|+
T Consensus 106 ~L~L~~N~l~ 115 (193)
T 2wfh_A 106 LLSLHGNDIS 115 (193)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 9999999875
No 28
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=1.2e-11 Score=94.67 Aligned_cols=93 Identities=24% Similarity=0.309 Sum_probs=75.0
Q ss_pred CCEEEEEcCCCCCCCCC----------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCcccccc
Q 048227 75 RRVMQLSLNKTTKFNDS----------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSF 138 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~----------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l 138 (179)
.+++.|+|+++. +..+ .+|.+. .+| ...|..+++|++|+|++|++++..|. .+
T Consensus 56 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~-----~~~f~~l~~L~~L~L~~N~l~~~~~~----~~ 124 (220)
T 2v9t_B 56 KKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKIT-ELP-----KSLFEGLFSLQLLLLNANKINCLRVD----AF 124 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCC-CCC-----TTTTTTCTTCCEEECCSSCCCCCCTT----TT
T ss_pred CCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCC-ccC-----HhHccCCCCCCEEECCCCCCCEeCHH----Hc
Confidence 357777777776 6533 233332 222 23478899999999999999997787 89
Q ss_pred CcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 139 GSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 139 ~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
..+++|++|+|++|++++..|..+..+++|++|+|++|++
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999999999999999988888899999999999999986
No 29
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=2.2e-11 Score=90.24 Aligned_cols=87 Identities=22% Similarity=0.276 Sum_probs=71.9
Q ss_pred cceEeCCCCCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCC
Q 048227 66 EGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK 145 (179)
Q Consensus 66 ~Gv~C~~~~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~ 145 (179)
.+..|.. +.++++++. +. .+|.. +. ++|++|+|++|+|++..|. .+..+++|+
T Consensus 8 ~~C~C~~-----~~l~~~~n~-l~---------~iP~~------~~--~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~ 60 (174)
T 2r9u_A 8 SQCSCDQ-----TLVNCQNIR-LA---------SVPAG------IP--TDKQRLWLNNNQITKLEPG----VFDHLVNLQ 60 (174)
T ss_dssp TTSEECS-----SEEECCSSC-CS---------SCCSC------CC--TTCSEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred CCCEECC-----cEEEeCCCC-CC---------ccCCC------cC--CCCcEEEeCCCCccccCHH----HhcCCcCCC
Confidence 3446742 568888888 75 56654 22 7899999999999997787 899999999
Q ss_pred EEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 146 ILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 146 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+|+|++|+|++..+..|.++++|++|+|++|+|+
T Consensus 61 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 61 QLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 9999999999765566799999999999999875
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.29 E-value=1.8e-11 Score=95.13 Aligned_cols=67 Identities=31% Similarity=0.460 Sum_probs=55.2
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|..+++|++|+|++|++++..+. .+..+++|++|+|++|++++..|..++.+++|++|+|++|+++
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred HhcccCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 467788899999999999875554 5788889999999999998766667888899999999998874
No 31
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.8e-11 Score=90.26 Aligned_cols=80 Identities=24% Similarity=0.256 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCc
Q 048227 78 MQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS 157 (179)
Q Consensus 78 ~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~ 157 (179)
+.++++++. ++ .+|.. + .++|++|+|++|+|++..|. .|..+++|++|+|++|+|++.
T Consensus 12 ~~l~~s~n~-l~---------~ip~~------~--~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l 69 (170)
T 3g39_A 12 TTVDCSGKS-LA---------SVPTG------I--PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVL 69 (170)
T ss_dssp TEEECTTSC-CS---------SCCSC------C--CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCC
T ss_pred CEEEeCCCC-cC---------ccCcc------C--CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCcc
Confidence 578999998 76 45543 2 27899999999999997787 899999999999999999977
Q ss_pred ChhhhCCCCCCCEEeCCCCcCC
Q 048227 158 ILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 158 iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|..|.++++|++|+|++|+|+
T Consensus 70 ~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 70 PAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC
T ss_pred ChhhccCCCCCCEEECCCCccC
Confidence 7777899999999999999875
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=1.4e-11 Score=94.86 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=74.8
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCcc----------ccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL 144 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L 144 (179)
..++.|+|+++. +..+....|.+.-... .+....|..+++|++|+|++|+++ .+|. .+..+++|
T Consensus 64 ~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L 137 (229)
T 3e6j_A 64 INLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR----GIERLTHL 137 (229)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT----TGGGCTTC
T ss_pred cCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc----ccccCCCC
Confidence 467888888887 6633222221110000 111234778999999999999999 5898 89999999
Q ss_pred CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++|+|++|++++..+..+..+++|++|+|++|.++
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999999999777778999999999999999874
No 33
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2e-11 Score=89.98 Aligned_cols=66 Identities=30% Similarity=0.455 Sum_probs=46.1
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
|..+++|++|++++|++++..+. .+..+++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPDG----VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred hcCcccccEEECCCCcceEeChh----HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence 56677777777777777764444 4667777777777777777655556677777777777777653
No 34
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=1.2e-11 Score=101.20 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=63.5
Q ss_pred CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCc-c----------ccCCccCCCCCCCcEEec
Q 048227 62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSA-S----------LLNMSLFYPFEELQNLDL 121 (179)
Q Consensus 62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~-~----------~~~~~~l~~l~~L~~L~L 121 (179)
| .+..+.|... ...++.|+|+++. ++.+....|.+.++. . .+.+..|..+++|++|+|
T Consensus 18 C-~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 18 C-ASNILSCSKQQLPNVPQSLPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp E-ETTEEECCSSCCSSCCSSCCTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred E-CCCEEEeCCCCcCccCccCCCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 5 6777888641 1346778888887 764333222211110 0 111223566667777777
Q ss_pred cCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 122 SGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 122 s~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++|++++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|+|
T Consensus 96 s~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 96 SSNHLHTLDEF----LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp CSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcCCcCCHH----HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 77776664444 456666666666666666655566666666666666666655
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.25 E-value=1.5e-11 Score=106.28 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL 144 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L 144 (179)
.+++.|+++++. ++++....|.+---. ..+.+..|.++++|++|+|++|++++..|. .++.+++|
T Consensus 32 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG----SFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT----SSTTCTTC
T ss_pred CCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh----hcCCcccC
Confidence 568899999988 763222111110000 011123366677777777777777776666 67777777
Q ss_pred CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++|++++|++++..|..++++++|++|++++|++
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 140 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCC
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcc
Confidence 7777777777766556677777777777777765
No 36
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=3.7e-11 Score=90.69 Aligned_cols=67 Identities=30% Similarity=0.382 Sum_probs=59.7
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|..+++|++|++++|++++..+. .+..+++|++|++++|++++..+..+.++++|++|++++|.++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred HhcCccCCCEEEcCCCcCcccCHh----HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 378899999999999999986555 6899999999999999999777777899999999999999763
No 37
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=8.7e-12 Score=89.38 Aligned_cols=84 Identities=25% Similarity=0.255 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
.+++.++++++. +. +. ..+..+++|++|++++|++++.+|. .+..+++|++|++++|++
T Consensus 42 ~~L~~L~l~~n~-l~--------~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 42 EELEFLSTINVG-LT--------SI--------ANLPKLNKLKKLELSDNRVSGGLEV----LAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp TTCCEEECTTSC-CC--------CC--------TTCCCCTTCCEEECCSSCCCSCTHH----HHHHCTTCCEEECTTSCC
T ss_pred CCCcEEECcCCC-CC--------Cc--------hhhhcCCCCCEEECCCCcccchHHH----HhhhCCCCCEEECCCCcC
Confidence 468889999888 76 22 2377889999999999999998887 777899999999999999
Q ss_pred CCc-ChhhhCCCCCCCEEeCCCCcCC
Q 048227 155 NDS-ILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 155 ~g~-iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++. .|..++.+++|++|++++|+++
T Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 101 KDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CChHHHHHHhhCCCCCEEeCcCCccc
Confidence 973 4588999999999999999864
No 38
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=2.3e-11 Score=98.58 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=69.8
Q ss_pred EEEcCCC-CCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccC-CccCccccCccccccCcccCCCEEeCcCCCCCC
Q 048227 79 QLSLNKT-TKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSG-NRFEGLYENKTYDSFGSLKQLKILNLGDNRFND 156 (179)
Q Consensus 79 ~l~L~~~-~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g 156 (179)
.++++++ + ++ .||. +..+++|++|+|++ |+|++..|. .|+.|++|++|+|++|+|++
T Consensus 12 ~v~~~~~n~-l~---------~ip~-------l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 12 GLRCTRDGA-LD---------SLHH-------LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp CEECCSSCC-CT---------TTTT-------SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCE
T ss_pred EEEcCCCCC-CC---------ccCC-------CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccce
Confidence 4588887 6 66 3443 66788999999996 999997667 89999999999999999999
Q ss_pred cChhhhCCCCCCCEEeCCCCcCC
Q 048227 157 SILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 157 ~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
..|..|+++++|++|+|++|+|+
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSSCCS
T ss_pred eCHHHhcCCcCCCEEeCCCCccc
Confidence 99999999999999999999985
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.24 E-value=5.9e-11 Score=93.34 Aligned_cols=64 Identities=34% Similarity=0.350 Sum_probs=32.9
Q ss_pred CCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 111 YPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 111 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
..+++|++|++++|++++..|. .++.+++|++|++++|++++..|..++++++|++|++++|++
T Consensus 154 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSLPEG----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCccCCEEECCCCCcCccCHH----HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 3444555555555555543333 345555555555555555554444455555555555555544
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.23 E-value=1.8e-11 Score=105.39 Aligned_cols=67 Identities=28% Similarity=0.348 Sum_probs=55.3
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCC-CCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTL-TSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~L~Ls~N~lt 179 (179)
.|.++++|++|+|++|+|++..|. .+..+++|++|||++|+|++..|..+..+ ++|++|+|++|+++
T Consensus 513 ~f~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHNNFFSLDTF----PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCCG----GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred HHcCCCCCCEEECCCCcCCCCChh----HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 377888888888888888886666 78888888888888888888888888887 57888888888764
No 41
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=2.2e-11 Score=87.20 Aligned_cols=85 Identities=28% Similarity=0.333 Sum_probs=73.3
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
.+++.++++++. +.+ |.+|.. +..+++|++|++++|.+++. . .++.+++|++|++++|++
T Consensus 17 ~~l~~L~l~~n~-l~~-------~~~~~~------~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 17 SDVKELVLDNSR-SNE-------GKLEGL------TDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp GGCSEEECTTCB-CBT-------TBCCSC------CTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCC
T ss_pred ccCeEEEccCCc-CCh-------hHHHHH------HhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcc
Confidence 467889988887 641 455543 67899999999999999985 5 899999999999999999
Q ss_pred CCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 155 NDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 155 ~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++.+|..+..+++|++|++++|+++
T Consensus 77 ~~~~~~~~~~l~~L~~L~ls~N~i~ 101 (149)
T 2je0_A 77 SGGLEVLAEKCPNLTHLNLSGNKIK 101 (149)
T ss_dssp CSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred cchHHHHhhhCCCCCEEECCCCcCC
Confidence 9889999999999999999999875
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.23 E-value=5.5e-11 Score=93.53 Aligned_cols=66 Identities=27% Similarity=0.378 Sum_probs=47.6
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
|..+++|++|++++|++++..|. .++.+++|++|++++|++++..|..++.+++|++|++++|+++
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKG----VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred hccCCCCCEEECCCCccCccCHH----HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 56677777777777777764444 5677777777777777777666666777777888888777763
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.22 E-value=3.8e-11 Score=100.80 Aligned_cols=95 Identities=24% Similarity=0.283 Sum_probs=53.9
Q ss_pred ccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccc
Q 048227 65 WEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTY 135 (179)
Q Consensus 65 w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~ 135 (179)
|..|.|... ...++.|+|+++. +.. ..| ..|.++++|++|+|++|++++..|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~-i~~--------~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~--- 117 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENN-IQM--------IQA------DTFRHLHHLEVLQLGRNSIRQIEVG--- 117 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCE--------ECT------TTTTTCTTCCEEECCSSCCCEECTT---
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCc-Cce--------ECH------HHcCCCCCCCEEECCCCccCCcChh---
Confidence 567888642 1367888888888 762 111 2245555555555555555554444
Q ss_pred cccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 136 DSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 136 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
.|..+++|++|+|++|++++..+..+..+++|++|+|++|++
T Consensus 118 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 118 -AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp -TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred -hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 555555555555555555544444455555555555555544
No 44
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=1.5e-11 Score=89.80 Aligned_cols=84 Identities=29% Similarity=0.265 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
.+++.|+++++. +. +. ..+..+++|++|++++|++++.+|. .+..+++|++|++++|++
T Consensus 49 ~~L~~L~l~~n~-l~--------~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l 107 (168)
T 2ell_A 49 VNLEFLSLINVG-LI--------SV--------SNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKL 107 (168)
T ss_dssp GGCCEEEEESSC-CC--------CC--------SSCCCCSSCCEEEEESCCCCSCCCH----HHHHCTTCCEEECBSSSC
T ss_pred CCCCEEeCcCCC-CC--------Ch--------hhhccCCCCCEEECcCCcCchHHHH----HHhhCCCCCEEeccCCcc
Confidence 355666666666 54 21 3377899999999999999998787 777799999999999999
Q ss_pred CCc-ChhhhCCCCCCCEEeCCCCcCC
Q 048227 155 NDS-ILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 155 ~g~-iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++. .+..+..+++|++|++++|+++
T Consensus 108 ~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 108 KDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred CcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 963 2378999999999999999874
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.19 E-value=2.6e-11 Score=109.31 Aligned_cols=103 Identities=22% Similarity=0.170 Sum_probs=60.5
Q ss_pred CccceEeCCCCCCEEEEEcCCCCCCCCC----------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccC
Q 048227 64 DWEGVKCSATTRRVMQLSLNKTTKFNDS----------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFE 127 (179)
Q Consensus 64 ~w~Gv~C~~~~~~v~~l~L~~~~~l~~~----------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~ 127 (179)
+|..|.+ ...+++.|+|+++. ++.+ ..|.+.+.++ +..|.++++|++|+|++|+++
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-----~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTID-----KEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEEC-----TTTTSSCTTCCEEECTTCCCC
T ss_pred CCCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccC-----HHHhcCCCCCCEEECCCCcCc
Confidence 6777777 24678899999887 7632 2222333332 233556666666666666666
Q ss_pred ccccCccccccCcccCCCEEeCcCCCCCCcChhh--hCCCCCCCEEeCCCCcC
Q 048227 128 GLYENKTYDSFGSLKQLKILNLGDNRFNDSILRY--LNTLTSLTTLILRFNNI 178 (179)
Q Consensus 128 g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~Ls~N~l 178 (179)
+..|. .++.+++|++|+|++|++++.+|.. ++++++|++|+|++|++
T Consensus 87 ~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 87 FLHPD----AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp EECTT----SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred ccCHh----HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence 65555 5555666666666666665555443 55555555555555554
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.19 E-value=2.8e-11 Score=99.56 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=39.0
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
|..+++|++|++++|+++. +|.. .++.+++|++|++++|++++..|..+.++++|++|++++|++
T Consensus 113 ~~~l~~L~~L~L~~n~l~~-l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSS-LPRG---IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp TTTCTTCCEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCCccCc-CCHH---HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 4555566666666666554 3330 245666666666666666655555666666666666666655
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.18 E-value=4.1e-11 Score=104.12 Aligned_cols=66 Identities=24% Similarity=0.256 Sum_probs=45.7
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
|+.+++|++|+|++|.+++..|. .|+.+++|++|+|++|.+++..|..|+++++|++|+|++|+++
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred HcCCCCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 56666777777777777653332 3567777777777777777777777777777777777777653
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.18 E-value=1.1e-10 Score=91.94 Aligned_cols=65 Identities=29% Similarity=0.313 Sum_probs=41.7
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|++++|++++..|. .+..+++|++|++++|++++..+..++++++|++|+|++|++
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 45556666666666666664454 566666667777777666655555566666777777776665
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.17 E-value=1.3e-10 Score=91.70 Aligned_cols=65 Identities=28% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|++++|++++..|. .+..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPH----AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred hcCccccCEEECCCCcccccCHh----HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 34445555555555555554444 455555555555555555554444455555555555555543
No 50
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=6.8e-11 Score=88.71 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=32.1
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|++++|++++..|. .++.+++|++|++++|++.+.+| .+..+++|++|++++|++
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~----~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILT----KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHH----HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC
T ss_pred hcCCCCCCEEEecCCccCcHhHH----HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC
Confidence 44455555555555555554444 45555555555555554222344 345555555555555544
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.17 E-value=9.3e-11 Score=98.72 Aligned_cols=110 Identities=22% Similarity=0.264 Sum_probs=66.4
Q ss_pred CccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEEeccCC
Q 048227 64 DWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNLDLSGN 124 (179)
Q Consensus 64 ~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L~Ls~N 124 (179)
.|..|.|... ...++.|+|+++. +..+....|.+--.. ..+.+..|.++++|++|+|++|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4678888642 2367888998888 763221111110000 0011233666677777777777
Q ss_pred ccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 125 RFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 125 ~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++++..+. .+..+++|++|+|++|++++..|..+.++++|++|+|++|++
T Consensus 91 ~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 91 RLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp CCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred cCCccCcc----cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence 77663333 466777777777777777776677777777777777777765
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.17 E-value=1.3e-10 Score=100.34 Aligned_cols=94 Identities=23% Similarity=0.302 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCCCCCC----------------CCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCcccccc
Q 048227 75 RRVMQLSLNKTTKFND----------------SNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSF 138 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~----------------~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l 138 (179)
.+++.|+++++. +.. +.+|.+.+..| ..|+++++|++|++++|++++..|. .+
T Consensus 56 ~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p------~~~~~l~~L~~L~L~~n~l~~~~~~----~~ 124 (606)
T 3vq2_A 56 SELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSP------GSFSGLTSLENLVAVETKLASLESF----PI 124 (606)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCT------TSSTTCTTCCEEECTTSCCCCSSSS----CC
T ss_pred ccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccCh------hhcCCcccCCEEEccCCcccccccc----cc
Confidence 456777777766 542 22333334333 3488899999999999999986667 89
Q ss_pred CcccCCCEEeCcCCCCCC-cChhhhCCCCCCCEEeCCCCcCC
Q 048227 139 GSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 139 ~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+.+++|++|++++|++++ .+|..++++++|++|++++|+++
T Consensus 125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 999999999999999986 78999999999999999999874
No 53
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=5.9e-11 Score=103.07 Aligned_cols=83 Identities=24% Similarity=0.290 Sum_probs=71.5
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
..++.|+|+++. ++ .+|.. ++.+++|++|+|++|+|++ +| .++.+++|++|+|++|+|
T Consensus 463 ~~L~~L~Ls~N~-l~---------~lp~~------~~~l~~L~~L~Ls~N~l~~-lp-----~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 463 LLVTHLDLSHNR-LR---------ALPPA------LAALRCLEVLQASDNALEN-VD-----GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp TTCCEEECCSSC-CC---------CCCGG------GGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCC
T ss_pred ccCcEeecCccc-cc---------ccchh------hhcCCCCCEEECCCCCCCC-Cc-----ccCCCCCCcEEECCCCCC
Confidence 357778887777 65 55544 7889999999999999998 66 689999999999999999
Q ss_pred CCcC-hhhhCCCCCCCEEeCCCCcCC
Q 048227 155 NDSI-LRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 155 ~g~i-P~~l~~l~~L~~L~Ls~N~lt 179 (179)
++.+ |..++.+++|++|+|++|+|+
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 9887 999999999999999999874
No 54
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.16 E-value=1.3e-10 Score=92.55 Aligned_cols=67 Identities=30% Similarity=0.379 Sum_probs=45.9
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|..+++|++|+|++|++++..|. .+..+++|++|+|++|++++..+..+.++++|++|+|++|+|+
T Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred HHcCCCCCCEEECCCCCCCccChh----hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 356677777777777777764444 5667777777777777777544445567777777777777764
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.16 E-value=8.7e-11 Score=95.03 Aligned_cols=92 Identities=12% Similarity=0.016 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCCCCCC---------------CCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccC
Q 048227 75 RRVMQLSLNKTTKFND---------------SNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFG 139 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~---------------~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~ 139 (179)
..++.|+++++. +.+ +.+|.+.+.+|.. ++.+++|++|++++|++.+.+|. .++
T Consensus 206 ~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~------~~~l~~L~~L~L~~n~~~~~~p~----~~~ 274 (328)
T 4fcg_A 206 QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI------FGGRAPLKRLILKDCSNLLTLPL----DIH 274 (328)
T ss_dssp TTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCC------TTCCCCCCEEECTTCTTCCBCCT----TGG
T ss_pred CCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHH------hcCCCCCCEEECCCCCchhhcch----hhh
Confidence 357788888877 652 1233333444432 55566666666666666666666 666
Q ss_pred cccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227 140 SLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 140 ~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 177 (179)
.+++|++|+|++|++.|.+|+.++++++|+.+++..|.
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 66666666666666666666666666666666665543
No 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.16 E-value=6.3e-11 Score=98.90 Aligned_cols=66 Identities=33% Similarity=0.397 Sum_probs=43.1
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..+++|++|+|++|++++..|. .+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQ----SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hcCcccCCEEECCCCcccccChh----hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 55566666666666666665565 6666677777777777776544455566677777777776653
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.16 E-value=2.8e-11 Score=97.06 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=36.7
Q ss_pred ccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcc-----cCCCEEeCcCCCCCCcChhhhCCCCCCC
Q 048227 95 LFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSL-----KQLKILNLGDNRFNDSILRYLNTLTSLT 169 (179)
Q Consensus 95 ~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l-----~~L~~L~Ls~N~l~g~iP~~l~~l~~L~ 169 (179)
.+.|.+|...+ +..+++|++|+|++|++++. |. .++.+ ++|++|++++|++++..|..++++++|+
T Consensus 106 ~l~~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 106 EVTGTAPPPLL----EATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp BCBSCCCCCSS----SCCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cccchhHHHHH----HhcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 33366655421 14455555555555555553 44 44433 4555555555555544444555555555
Q ss_pred EEeCCCCc
Q 048227 170 TLILRFNN 177 (179)
Q Consensus 170 ~L~Ls~N~ 177 (179)
+|+|++|+
T Consensus 177 ~L~Ls~N~ 184 (312)
T 1wwl_A 177 TLDLSDNP 184 (312)
T ss_dssp EEECCSCT
T ss_pred EEECCCCC
Confidence 55555554
No 58
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=5.5e-11 Score=86.80 Aligned_cols=86 Identities=22% Similarity=0.225 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCcc-ccCccccccCcccCCCEEeCcCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGL-YENKTYDSFGSLKQLKILNLGDNR 153 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~-iP~~~~~~l~~l~~L~~L~Ls~N~ 153 (179)
.+++.++++++. +. +.+|.. +..+++|++|++++|++++. .+. .+..+++|++|++++|.
T Consensus 71 ~~L~~L~Ls~N~-l~--------~~~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~----~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 71 PKLKKLELSENR-IF--------GGLDML------AEKLPNLTHLNLSGNKLKDISTLE----PLKKLECLKSLDLFNCE 131 (168)
T ss_dssp SSCCEEEEESCC-CC--------SCCCHH------HHHCTTCCEEECBSSSCCSSGGGG----GGSSCSCCCEEECCSSG
T ss_pred CCCCEEECcCCc-Cc--------hHHHHH------HhhCCCCCEEeccCCccCcchhHH----HHhcCCCCCEEEeeCCc
Confidence 467788888877 66 444432 55688999999999999883 225 78889999999999999
Q ss_pred CCCcCh---hhhCCCCCCCEEeCCCCcCC
Q 048227 154 FNDSIL---RYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 154 l~g~iP---~~l~~l~~L~~L~Ls~N~lt 179 (179)
+++..+ ..+..+++|++|++++|.++
T Consensus 132 l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 132 VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 996554 47889999999999988753
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.15 E-value=2.3e-10 Score=89.80 Aligned_cols=64 Identities=31% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 177 (179)
|..+++|++|+|++|++++..+. .+..+++|++|++++|++++..|..|.++++|++|+|++|+
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKG----VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hCcCcCCCEEECCCCcCCccCHh----HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 34444444444444444442222 23444444444444444443333334444444444444443
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.15 E-value=1.3e-10 Score=91.14 Aligned_cols=66 Identities=32% Similarity=0.417 Sum_probs=46.1
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCC-cChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
|..+++|++|++++|++++..+. .++.+++|++|++++|++++ .+|..++++++|++|++++|+++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hcCCccccEEECCCCCccccCch----hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 55666666666666666664444 56777777777777777765 35777777777777777777653
No 61
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.14 E-value=2.4e-11 Score=106.45 Aligned_cols=85 Identities=12% Similarity=0.286 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCC-----------------CCccccCCccCC--CCCCCcEEeccCCccCccccCccc
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGG-----------------PSASLLNMSLFY--PFEELQNLDLSGNRFEGLYENKTY 135 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~-----------------ip~~~~~~~~l~--~l~~L~~L~Ls~N~l~g~iP~~~~ 135 (179)
.+++.++|+++. ++ |. +|.. ++ ++++|++|+|++|++.|.+|.
T Consensus 206 ~~L~~L~Ls~n~-l~--------~~~~~~~~~~~~~~~~~~~ip~~------l~~~~l~~L~~L~L~~n~l~~~~p~--- 267 (636)
T 4eco_A 206 TKLRQFYMGNSP-FV--------AENICEAWENENSEYAQQYKTED------LKWDNLKDLTDVEVYNCPNLTKLPT--- 267 (636)
T ss_dssp TTCCEEEEESCC-CC--------GGGBSSSCSCTTSHHHHHHTTSC------CCGGGCTTCCEEEEECCTTCSSCCT---
T ss_pred cCCCEEECcCCc-cc--------cccccccccccccchhcccCchh------hhhcccCCCCEEEecCCcCCccChH---
Confidence 467888888887 77 43 4443 45 566666666666666666666
Q ss_pred cccCcccCCCEEeCcCCC-CCC-cChhhhCCC------CCCCEEeCCCCcC
Q 048227 136 DSFGSLKQLKILNLGDNR-FND-SILRYLNTL------TSLTTLILRFNNI 178 (179)
Q Consensus 136 ~~l~~l~~L~~L~Ls~N~-l~g-~iP~~l~~l------~~L~~L~Ls~N~l 178 (179)
.++++++|++|++++|+ ++| .+|..++++ ++|++|++++|++
T Consensus 268 -~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 268 -FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp -TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred -HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 66666666666666666 666 566655554 5566666665554
No 62
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.14 E-value=7.2e-11 Score=88.59 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
.+++.++++++. +. .+ ..+..+++|++|++++|++++..|. .++.+++|++|++++|++
T Consensus 66 ~~L~~L~l~~n~-~~---------~~-------~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 66 HNIKDLTINNIH-AT---------NY-------NPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp TTCSEEEEESCC-CS---------CC-------GGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBC
T ss_pred CCCCEEEccCCC-CC---------cc-------hhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCcc
Confidence 356777777776 54 11 1256677777777777777776666 777777777777777777
Q ss_pred CCcChhhhCCCCCCCEEeCCCCc
Q 048227 155 NDSILRYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 155 ~g~iP~~l~~l~~L~~L~Ls~N~ 177 (179)
++..|..++.+++|++|++++|+
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCT
T ss_pred CcHhHHHHhhCCCCCEEEccCCC
Confidence 77777777777777777777776
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.14 E-value=8.1e-11 Score=101.67 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL 144 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L 144 (179)
..++.|+++++. ++.+....|.+---. ..+.+..|.++++|++|+|++|++++..|. .++.+++|
T Consensus 33 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTC
T ss_pred CcCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh----hhcccccc
Confidence 468899999988 762211111100000 001122355566666666666666655555 56666666
Q ss_pred CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++|++++|++++..|..++++++|++|++++|++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcc
Confidence 6666666666654455566666666666666654
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.13 E-value=2.4e-10 Score=91.02 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=43.5
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
|..+++|++|+|++|++++..+. .+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.+
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELPAG----LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCCTT----TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred cccccCCCEEECCCCcCCccCHH----HhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 55667777777777777753333 4566777777777777777 5677676777777777777765
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.13 E-value=2.2e-10 Score=95.77 Aligned_cols=95 Identities=26% Similarity=0.314 Sum_probs=48.0
Q ss_pred ccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccc
Q 048227 65 WEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTY 135 (179)
Q Consensus 65 w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~ 135 (179)
|..|.|... ...++.|+|+++. +..+.. ..|.++++|++|+|++|++++..|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~-i~~~~~--------------~~~~~l~~L~~L~Ls~n~i~~i~~~--- 106 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQ-IQIIKV--------------NSFKHLRHLEILQLSRNHIRTIEIG--- 106 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCC-CCEECT--------------TTTSSCSSCCEEECCSSCCCEECGG---
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCc-CCeeCH--------------HHhhCCCCCCEEECCCCcCCccChh---
Confidence 567888642 1356778888887 762211 2244445555555555555443333
Q ss_pred cccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 136 DSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 136 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
.|..+++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus 107 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 107 -AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp -GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred -hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 444445555555555555433333444444455555544443
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.12 E-value=1.9e-10 Score=90.24 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=65.0
Q ss_pred CEEEEEcCCCCCCCCCCcCccCCCCCcc----------ccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCC
Q 048227 76 RVMQLSLNKTTKFNDSNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK 145 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~ 145 (179)
.++.|+++++. +..+....|.+--... .+....|..+++|++|++++|++++..|. .+..+++|+
T Consensus 29 ~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~ 103 (276)
T 2z62_A 29 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQ 103 (276)
T ss_dssp TCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCC
T ss_pred CccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh----hhcCCcccc
Confidence 57888888887 6632221111100000 11123466777888888888888776656 677888888
Q ss_pred EEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 146 ILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 146 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+|++++|++++..+..++++++|++|++++|+++
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccc
Confidence 8888888888666667788888888888888763
No 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=2.3e-10 Score=93.59 Aligned_cols=99 Identities=25% Similarity=0.285 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCcc----------ccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSAS----------LLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL 144 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~----------~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L 144 (179)
.+++.|+|+++. +..+....|.+--... .+....|..+++|++|+|++|++++..|. .|..+++|
T Consensus 64 ~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L 138 (361)
T 2xot_A 64 TNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN----AFEDMAQL 138 (361)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTC
T ss_pred cccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH----HhCCcccC
Confidence 457777777777 6533222221110000 11223478899999999999999997777 89999999
Q ss_pred CEEeCcCCCCCCcChhh-h---CCCCCCCEEeCCCCcCC
Q 048227 145 KILNLGDNRFNDSILRY-L---NTLTSLTTLILRFNNIE 179 (179)
Q Consensus 145 ~~L~Ls~N~l~g~iP~~-l---~~l~~L~~L~Ls~N~lt 179 (179)
++|+|++|+|++ +|.. + ..+++|++|+|++|+|+
T Consensus 139 ~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 139 QKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999999999996 5544 4 67999999999999875
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.12 E-value=1.6e-10 Score=101.17 Aligned_cols=67 Identities=28% Similarity=0.354 Sum_probs=48.9
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|+.+++|++|++++|++++..|. .++.+++|++|++++|++++..|..++++++|++|++++|+++
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred hhccCCCCCEEECCCCccCccChh----HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 366677777777777777765555 6777777777777777777777777777777777777777653
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.11 E-value=1.6e-10 Score=91.84 Aligned_cols=65 Identities=34% Similarity=0.417 Sum_probs=42.0
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|++++|++++..|. .+..+++|++|++++|++++..+..+..+++|++|+|++|++
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred HhhCcCCCEEECCCCCcCCcCHH----HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 55566666666666666665555 566666666666666666655555666666677777766665
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=2.9e-10 Score=98.72 Aligned_cols=67 Identities=25% Similarity=0.246 Sum_probs=56.7
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|+.+++|++|+|++|.+++..|. .++.+++|++|+|++|.+++..|..|+++++|++|+|++|+++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred HhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 378889999999999999986666 7889999999999999999655555789999999999999864
No 71
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.10 E-value=1.4e-10 Score=85.51 Aligned_cols=82 Identities=21% Similarity=0.177 Sum_probs=64.7
Q ss_pred CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227 76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~ 155 (179)
.++.++++++. +. + + ..+..+++|++|++++|++++ +|+. .+..+++|++|++++|+++
T Consensus 43 ~L~~L~Ls~N~-l~--------~-~-------~~l~~l~~L~~L~Ls~N~l~~-~~~~---~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 43 QFDAIDFSDNE-IR--------K-L-------DGFPLLRRLKTLLVNNNRICR-IGEG---LDQALPDLTELILTNNSLV 101 (176)
T ss_dssp CCSEEECCSSC-CC--------E-E-------CCCCCCSSCCEEECCSSCCCE-ECSC---HHHHCTTCCEEECCSCCCC
T ss_pred CCCEEECCCCC-CC--------c-c-------cccccCCCCCEEECCCCcccc-cCcc---hhhcCCCCCEEECCCCcCC
Confidence 56777777776 65 2 1 237788999999999999997 5540 3488999999999999996
Q ss_pred CcChh--hhCCCCCCCEEeCCCCcCC
Q 048227 156 DSILR--YLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 156 g~iP~--~l~~l~~L~~L~Ls~N~lt 179 (179)
.+|. .+..+++|++|++++|+++
T Consensus 102 -~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 102 -ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp -CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred -cchhhHhhhcCCCCCEEEecCCCCC
Confidence 6776 7889999999999999863
No 72
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=1.5e-10 Score=100.44 Aligned_cols=80 Identities=24% Similarity=0.326 Sum_probs=71.2
Q ss_pred CEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227 76 RVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155 (179)
Q Consensus 76 ~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~ 155 (179)
.++.|+|+++. ++ + +|. ++.+++|++|+|++|+|+ .+|. .++.+++|+.|+|++|+|+
T Consensus 442 ~L~~L~Ls~n~-l~--------~-lp~-------~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 442 DVRVLHLAHKD-LT--------V-LCH-------LEQLLLVTHLDLSHNRLR-ALPP----ALAALRCLEVLQASDNALE 499 (567)
T ss_dssp TCSEEECTTSC-CS--------S-CCC-------GGGGTTCCEEECCSSCCC-CCCG----GGGGCTTCCEEECCSSCCC
T ss_pred CceEEEecCCC-CC--------C-CcC-------ccccccCcEeecCccccc-ccch----hhhcCCCCCEEECCCCCCC
Confidence 46779999998 87 3 442 778899999999999999 6998 9999999999999999999
Q ss_pred CcChhhhCCCCCCCEEeCCCCcCC
Q 048227 156 DSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 156 g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+ +| .++++++|++|+|++|+|+
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCC
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCC
Confidence 7 78 8999999999999999985
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.09 E-value=1.8e-10 Score=91.61 Aligned_cols=68 Identities=28% Similarity=0.343 Sum_probs=57.6
Q ss_pred ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCC-CCCEEeCCCCcCC
Q 048227 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLT-SLTTLILRFNNIE 179 (179)
Q Consensus 108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~-~L~~L~Ls~N~lt 179 (179)
..+..+++|++|++++|++++..+. .+..+++|++|++++|++++..|..+..++ +|++|+|++|+++
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTF----PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSG----GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred HHhcCCCCCCEEECCCCccCccChh----hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 3477788999999999999886665 678889999999999999998888888884 8999999999763
No 74
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.09 E-value=2.2e-10 Score=92.28 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=62.3
Q ss_pred CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCC----------------cCccCCCCCccccCCccCCCCCCC
Q 048227 62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSN----------------YNLFYGGPSASLLNMSLFYPFEEL 116 (179)
Q Consensus 62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~----------------~n~~~g~ip~~~~~~~~l~~l~~L 116 (179)
| .|..+.|... ..+++.|+++++. +..+. +|.+.+. .+..|.++++|
T Consensus 33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L 104 (332)
T 2ft3_A 33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKI------HEKAFSPLRKL 104 (332)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEE------CGGGSTTCTTC
T ss_pred c-cCCEEECCCCCccccCCCCCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCcc------CHhHhhCcCCC
Confidence 6 7999999742 1367888888887 76221 1111111 11235556666
Q ss_pred cEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 117 QNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 117 ~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++|++++|+++. +|. .+. ++|++|++++|++++..+..+.++++|++|++++|++
T Consensus 105 ~~L~L~~n~l~~-l~~----~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 105 QKLYISKNHLVE-IPP----NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CEEECCSSCCCS-CCS----SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CEEECCCCcCCc-cCc----ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 666666666653 554 333 5666666666666654455677788888888888765
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.09 E-value=1.1e-10 Score=89.88 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=48.2
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCC-----------ccccCCccCCCCCCCcEEeccC-CccCccccCccccccCccc
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPS-----------ASLLNMSLFYPFEELQNLDLSG-NRFEGLYENKTYDSFGSLK 142 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip-----------~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~iP~~~~~~l~~l~ 142 (179)
..++.++++++. ++.+....|.+--- ...+....|..+++|++|++++ |++++..|. .+..++
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~----~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD----ALKELP 105 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT----SEECCT
T ss_pred CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH----HhCCCC
Confidence 468889999888 76322211111000 0001112344555555555555 555553333 455555
Q ss_pred CCCEEeCcCCCCCCcChhhhCCCCCCC---EEeCCCC
Q 048227 143 QLKILNLGDNRFNDSILRYLNTLTSLT---TLILRFN 176 (179)
Q Consensus 143 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~---~L~Ls~N 176 (179)
+|++|++++|++++ +|. ++.+++|+ +|++++|
T Consensus 106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCC
Confidence 56666666666554 454 55555555 6666555
No 76
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.09 E-value=2.2e-10 Score=92.13 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=58.5
Q ss_pred ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
..+..+++|++|++++|++++..|. .+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCcCceeChh----hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 3477889999999999999987776 7888999999999999998 78888999999999999999874
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.08 E-value=5.5e-10 Score=91.73 Aligned_cols=66 Identities=27% Similarity=0.316 Sum_probs=55.9
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChh-hhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILR-YLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~Ls~N~lt 179 (179)
.|..+++|++|++++|++++..|. .++.+++|++|++++|+++. +|. .++++++|++|++++|+++
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred hccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCCccC
Confidence 478889999999999999986666 78899999999999999984 554 4688999999999999764
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.08 E-value=4.4e-10 Score=90.31 Aligned_cols=103 Identities=21% Similarity=0.288 Sum_probs=60.4
Q ss_pred CCCCccceEeCCC---------CCCEEEEEcCCCCCCCCCC----------------cCccCCCCCccccCCccCCCCCC
Q 048227 61 CCDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSN----------------YNLFYGGPSASLLNMSLFYPFEE 115 (179)
Q Consensus 61 ~C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~----------------~n~~~g~ip~~~~~~~~l~~l~~ 115 (179)
.| .|..+.|... ...++.++++++. ++.+. +|.+.+.. +..|..+++
T Consensus 30 ~c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~ 101 (330)
T 1xku_A 30 QC-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKIS------PGAFAPLVK 101 (330)
T ss_dssp EE-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBC------TTTTTTCTT
T ss_pred cC-CCeEEEecCCCccccCccCCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeC------HHHhcCCCC
Confidence 36 7888999741 2357788888887 76221 11111111 122445555
Q ss_pred CcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 116 LQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 116 L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
|++|++++|+++. +|. .+. ++|++|++++|++++..|..+.++++|++|++++|++
T Consensus 102 L~~L~Ls~n~l~~-l~~----~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 102 LERLYLSKNQLKE-LPE----KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp CCEEECCSSCCSB-CCS----SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCc-cCh----hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence 5555555555553 444 332 4566666666666655566677778888888887765
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.06 E-value=4.2e-10 Score=95.61 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCc--cccCccccccCcccCCCEEeCcCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEG--LYENKTYDSFGSLKQLKILNLGDN 152 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g--~iP~~~~~~l~~l~~L~~L~Ls~N 152 (179)
..++.++++++. +. +.+|.. +..+++|++|++++|++++ .+|. .++.+++|++|++++|
T Consensus 324 ~~L~~L~Ls~n~-l~--------~~~~~~------~~~l~~L~~L~L~~N~l~~l~~~~~----~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 324 SPFLHLDFSNNL-LT--------DTVFEN------CGHLTELETLILQMNQLKELSKIAE----MTTQMKSLQQLDISQN 384 (520)
T ss_dssp CCCCEEECCSSC-CC--------TTTTTT------CCCCSSCCEEECCSSCCCBHHHHHH----HHTTCTTCCEEECCSS
T ss_pred CcccEEEeECCc-cC--------hhhhhh------hccCCCCCEEEccCCccCccccchH----HHhhCCCCCEEECCCC
Confidence 356666666666 55 544433 4555555666666665554 3444 4555555555555555
Q ss_pred CCCCcChhh-hCCCCCCCEEeCCCCcC
Q 048227 153 RFNDSILRY-LNTLTSLTTLILRFNNI 178 (179)
Q Consensus 153 ~l~g~iP~~-l~~l~~L~~L~Ls~N~l 178 (179)
++++.+|.. +..+++|++|++++|++
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred cCCcccccchhccCccCCEEECcCCCC
Confidence 555545543 44455555555555544
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.05 E-value=2e-10 Score=92.55 Aligned_cols=66 Identities=26% Similarity=0.345 Sum_probs=54.5
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.+..+++|++|++++|++++..|. .+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENG----SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTT----GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred HhcCCCCCCEEECCCCcCCcCChh----HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 367788888888888888886666 7788888888888888888 78888888888888888888764
No 81
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.05 E-value=3.6e-10 Score=83.29 Aligned_cols=82 Identities=26% Similarity=0.283 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCC-CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPF-EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR 153 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l-~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~ 153 (179)
..++.++++++. +. .+|. +..+ ++|++|++++|++++. + .++.+++|++|++++|+
T Consensus 19 ~~L~~L~l~~n~-l~---------~i~~-------~~~~~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 19 VRDRELDLRGYK-IP---------VIEN-------LGATLDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp TSCEEEECTTSC-CC---------SCCC-------GGGGTTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSSC
T ss_pred CCceEEEeeCCC-Cc---------hhHH-------hhhcCCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCCc
Confidence 468999999998 76 2221 3334 4899999999999984 4 78999999999999999
Q ss_pred CCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 154 FNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 154 l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+++..|..+..+++|++|+|++|+++
T Consensus 76 l~~~~~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 76 ICRIGEGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp CCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred ccccCcchhhcCCCCCEEECCCCcCC
Confidence 99654455689999999999999874
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.05 E-value=6.6e-11 Score=95.01 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=63.0
Q ss_pred CccceEeCCCCCCEEEEEcCCCCCCC---------------CCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCc
Q 048227 64 DWEGVKCSATTRRVMQLSLNKTTKFN---------------DSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEG 128 (179)
Q Consensus 64 ~w~Gv~C~~~~~~v~~l~L~~~~~l~---------------~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g 128 (179)
.|.++.|+. ..++.++++++. +. ++..|.+.+.++. +..+++|++|++++|.+++
T Consensus 38 ~W~~~~~~~--~~~~~l~l~~~~-~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-------~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 38 RWYRLASDE--SLWQTLDLTGKN-LHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-------HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp HHHHHHTCS--TTSSEEECTTCB-CCHHHHHHHHHTTCSEEECTTCEECSCCCS-------CCCCBCCCEEECTTCEECH
T ss_pred HHHHHhcCc--hhheeecccccc-CCHHHHHhhhhccceEEEcCCccccccchh-------hccCCCCCEEEccCCCcCH
Confidence 688877763 346677777654 33 1334444454433 3456677777777777765
Q ss_pred c-ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227 129 L-YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 129 ~-iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 176 (179)
. +|. .+..+++|++|++++|++++.+|..++++++|++|++++|
T Consensus 108 ~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 108 STLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp HHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred HHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 5 665 5666777777777777777666767777777777777766
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.05 E-value=2.2e-10 Score=97.38 Aligned_cols=64 Identities=30% Similarity=0.359 Sum_probs=52.0
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCC-cChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|.++++|++|+|++|+++. +|. . .+++|++|++++|++++ .+|..++++++|++|++++|+++
T Consensus 64 ~~~~l~~L~~L~Ls~N~l~~-lp~----~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 64 VFKFNQELEYLDLSHNKLVK-ISC----H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp GGTTCTTCCEEECCSSCCCE-EEC----C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred HhhcccCCCEEecCCCceee-cCc----c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 47778888888888888884 776 5 78888888888888887 57888888888888888888764
No 84
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=7.9e-11 Score=106.90 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=54.3
Q ss_pred CCEEEEEcCCCCCCCCC---------CcCccCCCCCccccCCccCC--CCCCCcEEeccCCccCccccCccccccCcccC
Q 048227 75 RRVMQLSLNKTTKFNDS---------NYNLFYGGPSASLLNMSLFY--PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQ 143 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~---------~~n~~~g~ip~~~~~~~~l~--~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~ 143 (179)
.+++.|+|+++. +++. ..|.+.|.+|.. ++ ++++|++|+|++|++.|.+|. .++++++
T Consensus 448 ~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~------l~f~~L~~L~~L~Ls~N~l~~~iP~----~l~~L~~ 516 (876)
T 4ecn_A 448 TKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE------LSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPE 516 (876)
T ss_dssp TTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC------CCGGGCTTCCEEEEESCTTCCSCCG----GGGGCSS
T ss_pred CCCCEEECcCCc-CCCCcccccccccccccccccCChh------hhhccCCCCCEEECcCCCCCccChH----HHhCCCC
Confidence 468888888888 7730 001111135543 44 566666666666666666666 6666666
Q ss_pred CCEEeCcCCC-CCC-cChhhhCCCC-------CCCEEeCCCCcC
Q 048227 144 LKILNLGDNR-FND-SILRYLNTLT-------SLTTLILRFNNI 178 (179)
Q Consensus 144 L~~L~Ls~N~-l~g-~iP~~l~~l~-------~L~~L~Ls~N~l 178 (179)
|++|+|++|+ ++| .+|..+++++ +|++|+|++|++
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 6666666665 666 5665544443 555555555554
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.04 E-value=4.4e-10 Score=96.67 Aligned_cols=64 Identities=28% Similarity=0.389 Sum_probs=45.9
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCC-cChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFND-SILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|..+++|++|+|++|+++. +|. . .+++|++|++++|++++ .+|..++++++|++|++++|+++
T Consensus 95 ~~~~l~~L~~L~Ls~N~l~~-lp~----~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 95 VFLFNQDLEYLDVSHNRLQN-ISC----C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp TTTTCTTCCEEECTTSCCCE-ECS----C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred HhCCCCCCCEEECCCCcCCc-cCc----c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 36667777777777777763 665 4 67777777777777775 45677777888888888777753
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.04 E-value=1.8e-10 Score=93.82 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=77.9
Q ss_pred CCCccceEeCCC---------CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccC
Q 048227 62 CDDWEGVKCSAT---------TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYEN 132 (179)
Q Consensus 62 C~~w~Gv~C~~~---------~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~ 132 (179)
| .|..|.|... ...++.|+|+++. ++ .|| ...|.++++|++|+|++|++.+.+|.
T Consensus 9 C-~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~-i~---------~i~-----~~~f~~l~~L~~L~Ls~N~i~~~i~~ 72 (350)
T 4ay9_X 9 C-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTK-LR---------VIQ-----KGAFSGFGDLEKIEISQNDVLEVIEA 72 (350)
T ss_dssp E-ETTEEEEESTTCCSCCTTCCTTCSEEEEESCC-CS---------EEC-----TTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred e-eCCEEEecCCCCCccCcCcCCCCCEEEccCCc-CC---------CcC-----HHHHcCCCCCCEEECcCCCCCCccCh
Confidence 7 7889999642 1357888888888 76 333 24488899999999999999888876
Q ss_pred ccccccCcccCCCE-EeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 133 KTYDSFGSLKQLKI-LNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 133 ~~~~~l~~l~~L~~-L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
. .|.+++++++ ++++.|+++...|..|..+++|++|++++|+++
T Consensus 73 ~---~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 73 D---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp T---SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred h---HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc
Confidence 3 5678887765 677789999777888999999999999998764
No 87
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.04 E-value=5.9e-10 Score=93.51 Aligned_cols=65 Identities=31% Similarity=0.416 Sum_probs=34.2
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|+|++|++++..|. .+..+++|++|++++|++++..|..|..+++|++|+|++|+|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGG----GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccccccccEEECcCCcCcccCcc----cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 44455555555555555554444 455555555555555555554455555555555555555544
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.04 E-value=2.6e-10 Score=91.22 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=35.8
Q ss_pred CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCc--Chh--hhCCCCCCCEEeCCCCcC
Q 048227 112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS--ILR--YLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~--iP~--~l~~l~~L~~L~Ls~N~l 178 (179)
.+++|++|+|++|++++..|. .++.+++|++|+|++|++.+. +|. .++.+++|++|+|++|++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCE----QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTT----SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred hccCCCEEEeeCCCcchhhHH----HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 355666666666666554444 556666666666666665542 221 224566666666666655
No 89
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.04 E-value=5.6e-10 Score=95.45 Aligned_cols=99 Identities=19% Similarity=0.220 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCc----------cccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSA----------SLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQL 144 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~----------~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L 144 (179)
.+++.|+++++. ++++....|.+---. ..+.+..|.++++|++|+|++|++++..|. .++.+++|
T Consensus 28 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTC
T ss_pred ccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh----hhcCcccc
Confidence 467888888887 663222111110000 011123466777777777777777775556 67777778
Q ss_pred CEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 145 KILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 145 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++|++++|++++..+..++++++|++|++++|++
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 136 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCC
T ss_pred ccccccccccccCCCccccccccccEEecCCCcc
Confidence 8888888877754444677788888888887765
No 90
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.03 E-value=4.7e-10 Score=95.94 Aligned_cols=65 Identities=32% Similarity=0.436 Sum_probs=42.3
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|++++|++++..|. .+..+++|++|++++|++++..|..+.++++|++|++++|++
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhcccCCCEEECCCCccccCChh----hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 45566666666666666665555 666666666666666666666556666666666666666665
No 91
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.03 E-value=5.2e-10 Score=96.64 Aligned_cols=65 Identities=20% Similarity=0.124 Sum_probs=41.4
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
|+.+++|++|++++|++++..|. .++.+++|++|++++|++++..++.+..+++|++|++++|++
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGS----CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred hcccccccEeeccccCcccCCcc----hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 56667777777777777664455 666677777777777777653323333466777777777665
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.02 E-value=9.8e-10 Score=96.21 Aligned_cols=65 Identities=29% Similarity=0.281 Sum_probs=32.1
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhC--CCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLN--TLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~--~l~~L~~L~Ls~N~l 178 (179)
|+++++|++|++++|.+++..|. .++.+++|++|++++|++++..|..+. .+++|++|++++|++
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKLG----TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCCC----SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred ccccCCCCEEECCCCcccccCch----hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 44455555555555555554444 445555555555555555544444332 334555555555543
No 93
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.02 E-value=5.4e-10 Score=93.46 Aligned_cols=93 Identities=19% Similarity=0.191 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCCCCCCC--------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCc
Q 048227 75 RRVMQLSLNKTTKFNDS--------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGS 140 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~--------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~ 140 (179)
..++.|+++++. ++.+ .+|.+.+.. +..|..+++|++|+|++|++++..|. .+..
T Consensus 185 ~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~ 253 (440)
T 3zyj_A 185 SNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIR------PGSFQGLMHLQKLWMIQSQIQVIERN----AFDN 253 (440)
T ss_dssp SSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEEC------TTTTTTCTTCCEEECTTCCCCEECTT----SSTT
T ss_pred cccCeecCCCCc-CccccccCCCcccCEEECCCCccCccC------hhhhccCccCCEEECCCCceeEEChh----hhcC
Confidence 357788888887 6632 222222221 23366777777777777777776666 7777
Q ss_pred ccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 141 LKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 141 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+++|++|+|++|++++..+..+..+++|++|+|++|.+
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 78888888888888866666677788888888888765
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.02 E-value=1.7e-10 Score=92.42 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=33.5
Q ss_pred CCCCCCCcEEeccCCccCcc--ccCcccccc--CcccCCCEEeCcCCCCCC--cCh-hhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGL--YENKTYDSF--GSLKQLKILNLGDNRFND--SIL-RYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~--iP~~~~~~l--~~l~~L~~L~Ls~N~l~g--~iP-~~l~~l~~L~~L~Ls~N~l 178 (179)
|+.+++|++|++++|++.|. +|. .+ +.+++|++|++++|++++ .+| ..+.++++|++|+|++|++
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHH----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred hccCCCCCEEECCCCCcCcchHHHH----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 45555555666655555543 222 22 555556666666666552 222 2234555666666666654
No 95
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.02 E-value=6e-10 Score=93.76 Aligned_cols=68 Identities=32% Similarity=0.408 Sum_probs=63.1
Q ss_pred ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
..|.++++|++|+|++|++++..|. .+..+++|++|++++|++++..|..|.++++|++|+|++|+++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 3478899999999999999998888 8999999999999999999988999999999999999999874
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.01 E-value=7.5e-10 Score=94.21 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=63.6
Q ss_pred CccceEeCCCCCCEEEEEcCCCCCCCC----------------CCcCccCCCCCccccCCccCC-CCCCCcEEeccCCcc
Q 048227 64 DWEGVKCSATTRRVMQLSLNKTTKFND----------------SNYNLFYGGPSASLLNMSLFY-PFEELQNLDLSGNRF 126 (179)
Q Consensus 64 ~w~Gv~C~~~~~~v~~l~L~~~~~l~~----------------~~~n~~~g~ip~~~~~~~~l~-~l~~L~~L~Ls~N~l 126 (179)
.+.++.|.. -..++.|+++++. +.+ +++|.+.+.+|.. +. .+++|++|+|++|.+
T Consensus 110 ~l~~~~~~~-l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 110 NISRVSCSR-GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE------LAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCCCEEECC-CSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG------GGGGTTTCCEEECTTSCC
T ss_pred cCCCCCccc-cCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHH------HhhhCCcccEEecCCCcc
Confidence 455566653 3456777777776 652 1223333322221 32 566777777777777
Q ss_pred CccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 127 EGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 127 ~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++. | ....+++|++|+|++|++++ +|+.+..+++|++|+|++|+|+
T Consensus 182 ~~~-~-----~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 182 YDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred ccc-c-----ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc
Confidence 763 3 23457888888888888886 4445888888888888888764
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.00 E-value=1e-09 Score=94.40 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=37.0
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..+++|++|++++|++++.+|.. .+..+++|++|++++|++++.+|..+. ++|++|+|++|+++
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDR---TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSC---CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCcCCCccChh---hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence 445555666666666665544441 245556666666666666655555443 56666666666653
No 98
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.95 E-value=6.2e-10 Score=94.96 Aligned_cols=84 Identities=31% Similarity=0.436 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
.+++.++++++. +. +..| ..|..+++|++|++++|++++..|. .++.+++|++|++++|++
T Consensus 50 ~~L~~L~Ls~n~-i~--------~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 50 ANLQVLILKSSR-IN--------TIEG------DAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp TTCCEEECTTSC-CC--------EECT------TTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCC
T ss_pred CcccEEECCCCC-cC--------ccCh------hhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcc
Confidence 468888998888 76 2222 2255666666666666666664444 466666666666666666
Q ss_pred CC-cChhhhCCCCCCCEEeCCCCc
Q 048227 155 ND-SILRYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 155 ~g-~iP~~l~~l~~L~~L~Ls~N~ 177 (179)
++ .+|..++++++|++|++++|+
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred cccchhhhhhccCCccEEECCCCc
Confidence 64 345566666666666666664
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.95 E-value=1.1e-09 Score=98.84 Aligned_cols=67 Identities=25% Similarity=0.246 Sum_probs=54.2
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccc--cCcccCCCEEeCcCCCCCCcCh-hhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDS--FGSLKQLKILNLGDNRFNDSIL-RYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~--l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~lt 179 (179)
.|.++++|++|+|++|.+++.+|. . ++.+++|++|+|++|++++..| ..|+++++|++|+|++|+++
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLK----DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCST----TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred HccCCcccCEeeCcCCCCCccccc----CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 378888888888888888887765 4 7888888888888888887655 57888888888888888763
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.92 E-value=8.6e-10 Score=98.28 Aligned_cols=143 Identities=16% Similarity=0.187 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHHhhccccccCCCCCcCCCCCCCCCCCCCCCCCCCccceEeCCCCCCEEEEEcCCCCCCC--------
Q 048227 18 ACLETERTALLELKSFFVSVSDIGYDHEILRSWGGDDEGMSSDCCDDWEGVKCSATTRRVMQLSLNKTTKFN-------- 89 (179)
Q Consensus 18 ~~~~~~~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~s~~~C~~w~Gv~C~~~~~~v~~l~L~~~~~l~-------- 89 (179)
+..+.++++|++++..+. ...+.....|.... ...+ .|.++.+.. .+++.++|.++. +.
T Consensus 128 s~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~----~~~~-~~~~~~~s~--~~~~~l~L~~n~-~~~~~~~~l~ 194 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLT-----DSKTAKKQQPTGDS----TPSG-TATNSAVST--PLTPKIELFANG-KDEANQALLQ 194 (727)
T ss_dssp ----CCCHHHHHHHHHHH-----HHHTTC---------------------------------------------------
T ss_pred hccccchhhhhhhhhhcc-----cccCcccCCCcCCC----Cccc-cCCCceecC--CccceEEeeCCC-CCcchhhHhh
Confidence 345678899999998875 22222345575532 3456 898888864 566776665544 32
Q ss_pred --CCCcCccCCC--------CCcc---------ccC---------CccCCCCCCCcEEeccCCccCccccCccccccCcc
Q 048227 90 --DSNYNLFYGG--------PSAS---------LLN---------MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSL 141 (179)
Q Consensus 90 --~~~~n~~~g~--------ip~~---------~~~---------~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l 141 (179)
.+..|.+.+. +++. .++ +..+..+++|++|+|++|.|+ .+|. .++.|
T Consensus 195 ~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l 269 (727)
T 4b8c_D 195 HKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA----EIKNL 269 (727)
T ss_dssp ---------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG----GGGGG
T ss_pred cCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh----hhhCC
Confidence 1122222110 0000 000 112446788899999999988 6888 88899
Q ss_pred cCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 142 KQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 142 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++|++|+|++|+|+ .+|..|+++++|++|+|++|.|+
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC
Confidence 99999999999998 78988999999999999999874
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.91 E-value=2e-09 Score=86.32 Aligned_cols=98 Identities=24% Similarity=0.288 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCc-cccC--------CccCCCCCCCcEEeccCCccCccccCccccccCcccCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSA-SLLN--------MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK 145 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~-~~~~--------~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~ 145 (179)
..++.|+++++. +.......+.+.++. ..++ ......+++|++|+|++|++++ +|+ .+..+++|+
T Consensus 144 ~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~----~~~~l~~L~ 217 (317)
T 3o53_A 144 SRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGP----EFQSAAGVT 217 (317)
T ss_dssp SSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECG----GGGGGTTCS
T ss_pred CCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc-chh----hhcccCccc
Confidence 468888888887 763221111111110 0000 0113347899999999999997 666 788899999
Q ss_pred EEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 146 ILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 146 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred EEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 9999999999 68888999999999999999874
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.91 E-value=2.2e-09 Score=85.76 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=54.7
Q ss_pred CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEE
Q 048227 92 NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTL 171 (179)
Q Consensus 92 ~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 171 (179)
++|.+.+.+|..... +..+++|++|+|++|+++ .+|. .+. ++|++|+|++|++++. |. +..+++|++|
T Consensus 232 s~N~l~~~~p~~~~~---~~~~~~L~~L~Ls~N~l~-~lp~----~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 232 SHNSLRATVNPSAPR---CMWSSALNSLNLSFAGLE-QVPK----GLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp TTSCCCCCCCSCCSS---CCCCTTCCCEECCSSCCC-SCCS----CCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCCCCccchhhHHh---ccCcCcCCEEECCCCCCC-chhh----hhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 445555665544111 222368999999999998 4787 554 7899999999999863 44 5778899999
Q ss_pred eCCCCcCC
Q 048227 172 ILRFNNIE 179 (179)
Q Consensus 172 ~Ls~N~lt 179 (179)
+|++|+|+
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 99999875
No 103
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.89 E-value=2.2e-09 Score=86.49 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=48.3
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..+++|++|++++|++++..|. .++.+++|++|++++|++++..| +..+++|++|++++|+|+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDME----VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHH----HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hcCCCCCCEEECcCCcCCCcChh----HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 56677888888888888877766 77788888888888888886555 777888888888888764
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.87 E-value=2.3e-09 Score=91.25 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=28.3
Q ss_pred CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhC-CCCCCCEEeCCCCcC
Q 048227 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLN-TLTSLTTLILRFNNI 178 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~-~l~~L~~L~Ls~N~l 178 (179)
++|++|+|++|.+++..|. .++.+++|++|+|++|++++.+|..+. .+++|++|+|++|+|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp SSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 3444444444444444444 444444444444444444444444443 344444444444443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.87 E-value=6.9e-09 Score=82.45 Aligned_cols=62 Identities=31% Similarity=0.471 Sum_probs=45.5
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..+++|++|++++|++++. + .+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 130 l~~l~~L~~L~l~~n~l~~~--~----~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEEccCCcCCcc--h----hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 55677777777777777763 3 67777888888888888876444 777788888888887764
No 106
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.83 E-value=1.8e-08 Score=81.69 Aligned_cols=88 Identities=23% Similarity=0.315 Sum_probs=72.4
Q ss_pred cceEeCCCCCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCC
Q 048227 66 EGVKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK 145 (179)
Q Consensus 66 ~Gv~C~~~~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~ 145 (179)
....|.. ..+ .+++++. ++ .+|.. +. ++|++|++++|++++..+. .+..+++|+
T Consensus 26 ~~~~C~~--~~~--c~~~~~~-l~---------~iP~~------~~--~~L~~L~l~~n~i~~~~~~----~~~~l~~L~ 79 (353)
T 2z80_A 26 ASLSCDR--NGI--CKGSSGS-LN---------SIPSG------LT--EAVKSLDLSNNRITYISNS----DLQRCVNLQ 79 (353)
T ss_dssp -CCEECT--TSE--EECCSTT-CS---------SCCTT------CC--TTCCEEECTTSCCCEECTT----TTTTCTTCC
T ss_pred cCCCCCC--CeE--eeCCCCC-cc---------ccccc------cc--ccCcEEECCCCcCcccCHH----HhccCCCCC
Confidence 5678875 233 7888887 76 55543 22 5899999999999986665 789999999
Q ss_pred EEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 146 ILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 146 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+|++++|++++..|..++++++|++|+|++|+++
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 80 ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 9999999999888889999999999999999874
No 107
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.82 E-value=1.1e-08 Score=82.42 Aligned_cols=65 Identities=28% Similarity=0.406 Sum_probs=58.5
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.+..+++|++|++++|++++ +| .+..+++|++|++++|++++..|..++.+++|++|++++|+++
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISD-IS-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCC-CG-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred hHhcCCCcCEEEccCCccCC-Ch-----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 36788999999999999988 44 6888999999999999999999999999999999999999875
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=2e-08 Score=78.68 Aligned_cols=58 Identities=33% Similarity=0.427 Sum_probs=43.4
Q ss_pred CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++|++|++++|++++ +| .+..+++|++|++++|++++ +| .+..+++|++|+|++|+++
T Consensus 106 ~~L~~L~L~~N~l~~-~~-----~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-TD-----SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SSCCEEECCSSCCSB-SG-----GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCC
T ss_pred CcccEEEccCCccCC-Ch-----hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCc
Confidence 566677777777666 33 57788888888888888885 44 5778888888888888764
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=6.2e-09 Score=81.62 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCCCCCCCC-------------cCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcc
Q 048227 75 RRVMQLSLNKTTKFNDSN-------------YNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSL 141 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~-------------~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l 141 (179)
.+++.++++++. ++++. +|.+.+ ...+..+++|++|++++|++++ +| .+..+
T Consensus 85 ~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~--------~~~l~~l~~L~~L~Ls~N~i~~-~~-----~l~~l 149 (263)
T 1xeu_A 85 TKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNELRD--------TDSLIHLKNLEILSIRNNKLKS-IV-----MLGFL 149 (263)
T ss_dssp SSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSCCSB--------SGGGTTCTTCCEEECTTSCCCB-CG-----GGGGC
T ss_pred CCCCEEECCCCc-cCCcCccccCcccEEEccCCccCC--------ChhhcCcccccEEECCCCcCCC-Ch-----HHccC
Confidence 467888888887 76422 222222 1237889999999999999998 44 68899
Q ss_pred cCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 142 KQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 142 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++|++|++++|++++. ..+..+++|++|++++|++
T Consensus 150 ~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 9999999999999976 7789999999999999975
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.79 E-value=1.8e-08 Score=88.15 Aligned_cols=62 Identities=31% Similarity=0.471 Sum_probs=41.5
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..+++|+.|+|++|++++. + .+..+++|+.|+|++|++++..| +..+++|+.|+|++|+|+
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l--~----~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC--G----GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ccCCCccCEEECCCCccCCc--h----hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 55566777777777777663 3 56667777777777777776544 666777777777776653
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.79 E-value=1.7e-08 Score=80.89 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=44.1
Q ss_pred CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.+++|++|++++|++++. | ....+++|++|++++|++++ +|+.+..+++|++|+|++|+++
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred ccCcCCEEECCCCcCccc-c-----cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc
Confidence 456677777777776663 3 23457888888888888884 5555888888888888888764
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.79 E-value=2e-08 Score=80.33 Aligned_cols=61 Identities=30% Similarity=0.402 Sum_probs=33.9
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|++++|++++ +| .++.+++|++|++++|++++ +|. +..+++|++|++++|++
T Consensus 125 l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITN-IS-----PLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG-----GGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCCccCc-Cc-----cccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 3444555555555555544 22 24555666666666666664 333 56666666666666655
No 113
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.78 E-value=2.5e-08 Score=79.71 Aligned_cols=62 Identities=24% Similarity=0.382 Sum_probs=44.5
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..+++|++|++++|++++ +| .+..+++|++|++++|++++. |. +..+++|++|+|++|+++
T Consensus 147 l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSD-LT-----PLANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCC
T ss_pred ccCCCCccEEEccCCcCCC-Ch-----hhcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccC
Confidence 5567778888888887776 43 366777788888888887753 33 677778888888877764
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.77 E-value=5.6e-09 Score=90.77 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=59.4
Q ss_pred Cccce-EeCCCCCCEEEEEcCCCCCCCCCCc-------------CccCCCCCccccCCccCCCCCCCcEEeccCCccCcc
Q 048227 64 DWEGV-KCSATTRRVMQLSLNKTTKFNDSNY-------------NLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGL 129 (179)
Q Consensus 64 ~w~Gv-~C~~~~~~v~~l~L~~~~~l~~~~~-------------n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ 129 (179)
.|.|+ .|.. .+++.|+|+++. +.+++. |.+. .+| ..+++|++|+|++|+|++
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~-~ip---------~~l~~L~~L~Ls~N~l~~- 114 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNRLN-LSSLPDNLPPQITVLEITQNALI-SLP---------ELPASLEYLDACDNRLST- 114 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCS-CCC---------CCCTTCCEEECCSSCCSC-
T ss_pred hhhhcccccc--CCccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCc-ccc---------cccCCCCEEEccCCCCCC-
Confidence 38999 7864 579999999998 873322 2221 122 235778888888888887
Q ss_pred ccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 130 YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 130 iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+|. +.. +|++|+|++|+|++ +|. .+++|++|+|++|+|+
T Consensus 115 ip~-----l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 115 LPE-----LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp CCC-----CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred cch-----hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence 764 222 67777777777775 555 4566666666666653
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=2.1e-08 Score=79.59 Aligned_cols=62 Identities=34% Similarity=0.450 Sum_probs=48.7
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..+++|++|++++|++++ ++ .+..+++|++|++++|++++. +.++.+++|++|++++|+++
T Consensus 108 l~~l~~L~~L~L~~n~i~~-~~-----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred hccCCCCCEEECCCCcCCC-Ch-----hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 6677888888888888877 33 677888888888888888864 56788888888888888764
No 116
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.77 E-value=1.5e-08 Score=77.72 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=51.7
Q ss_pred cCCCCCCCc-EEeccCCccCccccCccccccCcccCCCEEeCcCCC-CCCcChhhhCCC-CCCCEEeCCCCcCC
Q 048227 109 LFYPFEELQ-NLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR-FNDSILRYLNTL-TSLTTLILRFNNIE 179 (179)
Q Consensus 109 ~l~~l~~L~-~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l-~~L~~L~Ls~N~lt 179 (179)
.|..+++|+ +|++++|+++ .+|. .....++|++|++++|+ +++..|..|..+ ++|++|++++|+++
T Consensus 150 ~~~~l~~L~~~L~l~~n~l~-~i~~----~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNNGFT-SVQG----YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTTTTBSSEEEEECCSCCCC-EECT----TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred cccchhcceeEEEcCCCCCc-ccCH----hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 467788888 8999999888 5776 43334788899999994 886556778888 89999999988874
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.71 E-value=2.1e-09 Score=86.18 Aligned_cols=65 Identities=26% Similarity=0.377 Sum_probs=42.1
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCC-CCCC-cChhhhCCCCCCCEEeCCCC-cC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN-RFND-SILRYLNTLTSLTTLILRFN-NI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N-~l~g-~iP~~l~~l~~L~~L~Ls~N-~l 178 (179)
+..+++|++|++++|.+++.+|. .++.+++|++|++++| .+++ .+|..+.++++|++|++++| ++
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred HhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 45566777777777776666665 6666666777777666 5665 25555666666666666666 54
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=1.5e-10 Score=86.83 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=33.2
Q ss_pred CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh-hhhCCCCCCCEEeCCCCcC
Q 048227 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL-RYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~l 178 (179)
++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++
T Consensus 93 ~~L~~L~L~~N~l~~-l~-----~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-----GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-----HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CcCCEEECcCCcCCc-CC-----ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 445555555555544 33 34555666666666666663221 3566677777777776654
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=3.9e-10 Score=84.58 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRF 154 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l 154 (179)
..++.++++++. +. + +| .+..+++|++|++++|+++. +|. .+..+++|++|++++|++
T Consensus 48 ~~L~~L~ls~n~-l~--------~-l~-------~~~~l~~L~~L~l~~n~l~~-l~~----~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 48 KACKHLALSTNN-IE--------K-IS-------SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQI 105 (198)
T ss_dssp TTCSEEECSEEE-ES--------C-CC-------CHHHHTTCCEEEEEEEEECS-CSS----HHHHHHHCSEEEEEEEEC
T ss_pred CCCCEEECCCCC-Cc--------c-cc-------ccccCCCCCEEECCCCCccc-ccc----hhhcCCcCCEEECcCCcC
Confidence 466777777776 65 3 44 26678889999999999884 787 777788999999999999
Q ss_pred CCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 155 NDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 155 ~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++ +| .++.+++|++|++++|+++
T Consensus 106 ~~-l~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 106 AS-LS-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp CC-HH-HHHHHHHSSEEEESEEECC
T ss_pred Cc-CC-ccccCCCCCEEECCCCcCC
Confidence 86 56 6888899999999998874
No 120
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.70 E-value=2.9e-10 Score=90.05 Aligned_cols=62 Identities=32% Similarity=0.382 Sum_probs=52.5
Q ss_pred CCCCCcEEeccCCccCc--cccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCC--CCCEEeCCCCcCC
Q 048227 112 PFEELQNLDLSGNRFEG--LYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLT--SLTTLILRFNNIE 179 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g--~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~Ls~N~lt 179 (179)
++++|+.|+|++|+|++ .+|. .+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|.++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 47899999999999998 5666 778999999999999999975 3344444 9999999999873
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.69 E-value=3.1e-08 Score=83.63 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=53.8
Q ss_pred CCCCCCCcEEeccCCccCccccCcc--cc--ccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKT--YD--SFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~--~~--~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++.+++|+.|++++|.+.|.+|... ++ .+..+++|++|++++|+|+| +| ++++++|++|++++|+|+
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence 3567889999999999888888511 00 35667899999999999998 44 889999999999999875
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.69 E-value=5.8e-08 Score=84.87 Aligned_cols=88 Identities=32% Similarity=0.396 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCCCCCCC--------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCc
Q 048227 75 RRVMQLSLNKTTKFNDS--------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGS 140 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~--------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~ 140 (179)
..++.|+|+++. +.++ ..|.+.+ ...+..+++|++|+|++|++++ +| .+..
T Consensus 65 ~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~--------l~~l~~l~~L~~L~Ls~N~l~~-l~-----~l~~ 129 (605)
T 1m9s_A 65 PNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENKIKD--------LSSLKDLKKLKSLSLEHNGISD-IN-----GLVH 129 (605)
T ss_dssp TTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCC--------CTTSTTCTTCCEEECTTSCCCC-CG-----GGGG
T ss_pred CCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCCCCC--------ChhhccCCCCCEEEecCCCCCC-Cc-----cccC
Confidence 467788888777 6632 1222222 1237778889999999999887 44 6888
Q ss_pred ccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 141 LKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 141 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+++|+.|+|++|++++. +.+..+++|+.|+|++|+|+
T Consensus 130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 89999999999999864 67889999999999999874
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.68 E-value=5.7e-08 Score=81.94 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=46.7
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++++++|++|++++|++++ +|. .+ .+|++|++++|++++ +| .++++++|++|++++|+++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~----~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPD----LP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCC----CC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred cCCCCCCCEEECCCCcCcc-cCC----Cc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 7788888899998888887 775 33 478888888888886 66 5788888888888887763
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.67 E-value=3.2e-08 Score=83.23 Aligned_cols=61 Identities=26% Similarity=0.335 Sum_probs=49.2
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|++++|++++. + .+..+++|++|++++|++++.+| +..+++|++|++++|++
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV-S-----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred hccCccCCEeECCCCccCCc-h-----hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 45677888888888888773 3 67888889999999999988776 78888999999988875
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.65 E-value=1.2e-08 Score=83.78 Aligned_cols=65 Identities=28% Similarity=0.357 Sum_probs=33.6
Q ss_pred CCCCCCCcEEeccCCccC----ccccCccccccCcccCCCEEeCcCCCCCCc----Chhhh--CCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFE----GLYENKTYDSFGSLKQLKILNLGDNRFNDS----ILRYL--NTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~----g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~----iP~~l--~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|+|++|.++ +.+|. .+..+++|++|+|++|++++. +|..+ +++++|++|+|++|++
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHH----HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 444555666666666654 44454 445555555555555555543 34444 2255555555555544
No 126
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.63 E-value=3.1e-08 Score=78.33 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=35.9
Q ss_pred CCCCCCcEEeccCCccCccccCccccccCccc--CCCEEeCcCCCCCCcChh-------hhCCCCCCCEEe
Q 048227 111 YPFEELQNLDLSGNRFEGLYENKTYDSFGSLK--QLKILNLGDNRFNDSILR-------YLNTLTSLTTLI 172 (179)
Q Consensus 111 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~--~L~~L~Ls~N~l~g~iP~-------~l~~l~~L~~L~ 172 (179)
..+++|+.|+|++|+|++. . ++..++ +|++|+|++|.+++.+|. .+..+++|+.||
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~--~----~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSE--R----ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHSTTCCEEECTTSCCCSG--G----GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhCCCCCEEECCCCccCCc--h----hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4567777777777777763 2 333333 777777777777766652 355677777765
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.63 E-value=8.9e-08 Score=80.81 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=47.8
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
++.+++|++|++++|++++ + .++.+++|++|++++|++++ +| ++++++|++|++++|+++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~-~------~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN-L------DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-C------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCS
T ss_pred cccCCCCCEEECcCCCCce-e------ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccc
Confidence 5677888888888888877 3 35678888888888888886 55 788888888888888764
No 128
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.62 E-value=1e-07 Score=80.08 Aligned_cols=61 Identities=26% Similarity=0.337 Sum_probs=46.2
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+..+++|++|++++|++++ +| .++.+++|++|++++|++++. |+ +.++++|++|++++|++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIAD-IT-----PLANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTI 146 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEE
T ss_pred hhccccCCEEECCCCcccc-Ch-----hhcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCcc
Confidence 5677788888888888876 33 367788888888888888854 43 77888888888887765
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.61 E-value=1e-08 Score=84.09 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=22.8
Q ss_pred CCCCCCcEEeccCCccCc----cccCccccccCcccCCCEEeCcCCCCCC
Q 048227 111 YPFEELQNLDLSGNRFEG----LYENKTYDSFGSLKQLKILNLGDNRFND 156 (179)
Q Consensus 111 ~~l~~L~~L~Ls~N~l~g----~iP~~~~~~l~~l~~L~~L~Ls~N~l~g 156 (179)
..+++|++|+|++|++++ .+|. .+..+++|++|+|++|.+++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~----~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLID----FLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHH----HHHHCTTCCEEECCSSCCHH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHH----HHHhCCCCCEEECcCCCCCH
Confidence 445555555555555555 3444 45555555555555555543
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.57 E-value=9.7e-09 Score=83.75 Aligned_cols=62 Identities=26% Similarity=0.353 Sum_probs=41.2
Q ss_pred CCCcEEeccCCccCccccCccccccC----cc-cCCCEEeCcCCCCCCcChhhhC----C-CCCCCEEeCCCCcCC
Q 048227 114 EELQNLDLSGNRFEGLYENKTYDSFG----SL-KQLKILNLGDNRFNDSILRYLN----T-LTSLTTLILRFNNIE 179 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~----~l-~~L~~L~Ls~N~l~g~iP~~l~----~-l~~L~~L~Ls~N~lt 179 (179)
++|++|+|++|++++..+. .+. .+ ++|++|+|++|++++..+..+. . .++|++|+|++|+++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSD----ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CCccEEECcCCcCChHHHH----HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 6777777777777765544 333 33 6778888888887766655443 3 257888888887763
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.57 E-value=1.4e-07 Score=82.03 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=32.5
Q ss_pred CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+++|++|+|++|++++ +|. .+++|++|+|++|+|++ +|. +. ++|++|+|++|+|+
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE-------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CccccEEeCCCCccCc-CCC-------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 4456666666666655 443 34566666666666664 555 44 66666666666653
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.56 E-value=1.8e-07 Score=82.06 Aligned_cols=58 Identities=29% Similarity=0.259 Sum_probs=48.6
Q ss_pred CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcCC
Q 048227 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+++|++|+|++|+|+. +|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|+++
T Consensus 240 l~~L~~L~Ls~N~L~~-lp~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 240 PSELKELMVSGNRLTS-LPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCcCcEEECCCCCCCc-CCc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 4667777777777774 553 4578999999999999 88999999999999999999875
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.55 E-value=2.2e-07 Score=78.34 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCCCCCCC------------CcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCccc
Q 048227 75 RRVMQLSLNKTTKFNDS------------NYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLK 142 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~------------~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~ 142 (179)
..++.++++++. ++++ .+|.+.+ +| .++.+++|++|++++|++++ +|. .. +
T Consensus 153 ~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~-l~-------~~~~l~~L~~L~l~~N~l~~-l~~----~~---~ 215 (454)
T 1jl5_A 153 SFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEE-LP-------ELQNLPFLTAIYADNNSLKK-LPD----LP---L 215 (454)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSS-CC-------CCTTCTTCCEEECCSSCCSS-CCC----CC---T
T ss_pred CCCCEEECCCCc-CcccCCCcccccEEECcCCcCCc-Cc-------cccCCCCCCEEECCCCcCCc-CCC----Cc---C
Confidence 457777877777 6532 2333333 22 26777888888888888876 554 22 3
Q ss_pred CCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 143 QLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 143 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+|++|++++|+++ .+|. ++.+++|++|++++|++
T Consensus 216 ~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred cccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcC
Confidence 5666666666666 5553 66666666666666654
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.51 E-value=2.1e-08 Score=81.80 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCC-CCcEEeccCCccCccccCccccccCcc-----cCCCEEe
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFE-ELQNLDLSGNRFEGLYENKTYDSFGSL-----KQLKILN 148 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~-~L~~L~Ls~N~l~g~iP~~~~~~l~~l-----~~L~~L~ 148 (179)
..++.|+|+++. +. +.-+..+ ...+..++ +|++|+|++|++++..+. .+..+ ++|++|+
T Consensus 22 ~~L~~L~Ls~n~-l~--------~~~~~~l--~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 22 HGVTSLDLSLNN-LY--------SISTVEL--IQAFANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSLN 86 (362)
T ss_dssp TTCCEEECTTSC-GG--------GSCHHHH--HHHHHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEE
T ss_pred CCceEEEccCCC-CC--------hHHHHHH--HHHHHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEEE
Confidence 458899999888 76 2211000 02356677 899999999999987666 66665 8999999
Q ss_pred CcCCCCCCcChhhhCC----C-CCCCEEeCCCCcCC
Q 048227 149 LGDNRFNDSILRYLNT----L-TSLTTLILRFNNIE 179 (179)
Q Consensus 149 Ls~N~l~g~iP~~l~~----l-~~L~~L~Ls~N~lt 179 (179)
|++|++++..+..+.. + ++|++|+|++|+++
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 9999999888875544 4 89999999999874
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.51 E-value=2e-08 Score=88.06 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCCCCCCCCccceEeC------CCCCCEEEEEcCCCCCCCCCCc-------------CccCCCCCccccC
Q 048227 46 ILRSWGGDDEGMSSDCCDDWEGVKCS------ATTRRVMQLSLNKTTKFNDSNY-------------NLFYGGPSASLLN 106 (179)
Q Consensus 46 ~l~~W~~~~~~~s~~~C~~w~Gv~C~------~~~~~v~~l~L~~~~~l~~~~~-------------n~~~g~ip~~~~~ 106 (179)
....|... .+|| .|.|..|. .....++.|++++++ ++.++. |.+. .+|
T Consensus 11 ~w~~W~~~-----~~~~-~~~~r~~~~~~~~~c~~~~l~~L~ls~n~-L~~lp~~l~~~L~~L~L~~N~l~-~lp----- 77 (622)
T 3g06_A 11 VWSAWRRA-----APAE-ESRGRAAVVQKMRACLNNGNAVLNVGESG-LTTLPDCLPAHITTLVIPDNNLT-SLP----- 77 (622)
T ss_dssp HHHHHHHT-----CCGG-GHHHHHHHHHHHHHHHHHCCCEEECCSSC-CSCCCSCCCTTCSEEEECSCCCS-CCC-----
T ss_pred HHHHHHhc-----CCcc-hhccccccCcccccccCCCCcEEEecCCC-cCccChhhCCCCcEEEecCCCCC-CCC-----
Confidence 34567663 5788 89764321 112357889999888 763321 1111 111
Q ss_pred CccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 107 MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 107 ~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
..+++|++|+|++|++++ +|. .+++|++|++++|++++ +|. .+++|++|++++|++
T Consensus 78 ----~~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l 133 (622)
T 3g06_A 78 ----ALPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQL 133 (622)
T ss_dssp ----CCCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCC
T ss_pred ----CcCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCC
Confidence 135678888888888775 663 45777788888887774 444 344555555555544
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.43 E-value=2.5e-08 Score=83.09 Aligned_cols=66 Identities=27% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCCCCCCcEEeccCCccCccccCccccccCc-----ccCCCEEeCcCCCCCC----cChhhhCCCCCCCEEeCCCCcCC
Q 048227 110 FYPFEELQNLDLSGNRFEGLYENKTYDSFGS-----LKQLKILNLGDNRFND----SILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 110 l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~-----l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+..+++|++|++++|++++..+. .+.. .++|++|++++|++++ .+|..+..+++|++|++++|+++
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVR----ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHH----HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HhhCCCccEEEccCCccccccHH----HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 44568899999999998875544 3432 6799999999999997 88999999999999999999874
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.28 E-value=1.1e-06 Score=71.34 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=64.5
Q ss_pred eEeCCCCCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEE
Q 048227 68 VKCSATTRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKIL 147 (179)
Q Consensus 68 v~C~~~~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L 147 (179)
.+|.. + .++.++++ ++ .||.. + .+++++|+|++|+|+. ||+. .|.++++|++|
T Consensus 7 C~C~~---~--~v~C~~~~-Lt---------~iP~~------l--~~~l~~L~Ls~N~i~~-i~~~---~f~~l~~L~~L 59 (350)
T 4ay9_X 7 CHCSN---R--VFLCQESK-VT---------EIPSD------L--PRNAIELRFVLTKLRV-IQKG---AFSGFGDLEKI 59 (350)
T ss_dssp SEEET---T--EEEEESTT-CC---------SCCTT------C--CTTCSEEEEESCCCSE-ECTT---SSTTCTTCCEE
T ss_pred cEeeC---C--EEEecCCC-CC---------ccCcC------c--CCCCCEEEccCCcCCC-cCHH---HHcCCCCCCEE
Confidence 46753 2 46778888 76 55643 2 2579999999999997 6542 68999999999
Q ss_pred eCcCCCCCCcChh-hhCCCCCCCE-EeCCCCcCC
Q 048227 148 NLGDNRFNDSILR-YLNTLTSLTT-LILRFNNIE 179 (179)
Q Consensus 148 ~Ls~N~l~g~iP~-~l~~l~~L~~-L~Ls~N~lt 179 (179)
+|++|++.+.+|. .|.++++|++ +.+..|+++
T Consensus 60 ~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp EEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred ECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 9999999888875 5788988875 566667763
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.22 E-value=3.2e-07 Score=75.59 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=42.8
Q ss_pred CCCCCCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCCC----cChhhhCCCCCCCEEeCCCCcCC
Q 048227 111 YPFEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFND----SILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 111 ~~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
..+++|++|+|++|.++.. ++. .+...++|++|+|++|.++. .++..+...++|++|+|++|.|+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~----~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAA----QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHH----HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHH----HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3456677777777776642 233 45566778888888887764 24445556677888888888764
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.19 E-value=1.3e-07 Score=78.77 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=30.6
Q ss_pred CCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCCCcChhhhCC-----CCCCCEEeCCCCcC
Q 048227 115 ELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNT-----LTSLTTLILRFNNI 178 (179)
Q Consensus 115 ~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~-----l~~L~~L~Ls~N~l 178 (179)
+|++|++++|.+++. +|. .+..+++|++|++++|++++..+..+.. .++|++|++++|++
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSS----VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH----HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred cceeeEcCCCCCchHHHHHHHH----HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 455555555554433 233 3444556666666666665444433332 45666666666654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.15 E-value=8.2e-07 Score=73.10 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=49.8
Q ss_pred CCCCCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCCC----cChhhhCCCCCCCEEeCCCCcCC
Q 048227 112 PFEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFND----SILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
..+.|++|+|++|.++.. ++. .+..+++|++|||++|+++. .++..+...++|++|+|++|+|+
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~----~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLME----GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHH----HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCccceeeCCCCCCChHHHHHHHH----HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 457899999999988652 333 45678889999999999875 34567778889999999999875
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=1.3e-05 Score=64.28 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=43.4
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCC-EEeCcCCC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLK-ILNLGDNR 153 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~-~L~Ls~N~ 153 (179)
..++.++|+++. ++.+... .|.++++|+.|+|++| ++. |+.. .|.++++|+ .+++.+ +
T Consensus 226 ~~L~~l~L~~n~-i~~I~~~--------------aF~~~~~L~~l~l~~n-i~~-I~~~---aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 226 PNLVSLDISKTN-ATTIPDF--------------TFAQKKYLLKIKLPHN-LKT-IGQR---VFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp TTCCEEECTTBC-CCEECTT--------------TTTTCTTCCEEECCTT-CCE-ECTT---TTTTCTTCCEEEEECT-T
T ss_pred CCCeEEECCCCC-cceecHh--------------hhhCCCCCCEEECCcc-cce-ehHH---HhhCChhccEEEEEcc-c
Confidence 368889999887 7633333 3445555555555554 333 3321 445555555 555554 4
Q ss_pred CCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 154 FNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 154 l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
++..-+..|.++++|+.++++.|++
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ceEEchhhhhCCccCCEEEeCCCcc
Confidence 4422334455555555555544443
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.88 E-value=3e-06 Score=72.58 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=48.0
Q ss_pred CCCCcEEeccCCccCc-cccCccccccCcccCCCEEeCcCCCCCCc-ChhhhCCCCCCCEEeCCCCcCC
Q 048227 113 FEELQNLDLSGNRFEG-LYENKTYDSFGSLKQLKILNLGDNRFNDS-ILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 113 l~~L~~L~Ls~N~l~g-~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
+++|++|++++|++++ .++. .+..+++|++|++++|.|++. ++..+..+++|++|+|++|+++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLME----FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHH----HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCCCCHHHHHH----HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 6778888888888876 3444 557788888999998888755 4445567888999999888865
No 143
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.70 E-value=8.2e-05 Score=52.18 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCC
Q 048227 115 ELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFN 155 (179)
Q Consensus 115 ~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~ 155 (179)
+|++|+|++|+|+. +|.. .|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~-l~~~---~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-LPPG---LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSS-CCTT---TGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCc-cChh---hhhhccccCEEEecCCCee
Confidence 46777777777766 3331 4566667777777777653
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=2.3e-05 Score=58.03 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=31.9
Q ss_pred CCCcEEeccCCccCcc----ccCccccccCcccCCCEEeC--cCCCCCCc----ChhhhCCCCCCCEEeCCCCcC
Q 048227 114 EELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNL--GDNRFNDS----ILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~L--s~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l 178 (179)
+.|++|+|++|.++.. +.. .+...+.|++|+| ++|.++.. +...+...++|++|+|++|++
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~----~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVE----ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHH----GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCcCEEECcCCcCCHHHHHHHHH----HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4556666666665532 122 3444555666666 55666533 233344445666666666653
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=3.2e-05 Score=57.27 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCC-CCCCCCCcCccCCCCCcccc-CCccCCCCCCCcEEeccCCccCcc----ccCccccccCcccCCCE
Q 048227 73 TTRRVMQLSLNKT-TKFNDSNYNLFYGGPSASLL-NMSLFYPFEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKI 146 (179)
Q Consensus 73 ~~~~v~~l~L~~~-~~l~~~~~n~~~g~ip~~~~-~~~~l~~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~ 146 (179)
....++.|+|+++ . +.+ .+.. -...+...+.|++|+|++|++... +.. .+...+.|++
T Consensus 34 ~~~~L~~L~L~~n~~-i~~-----------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~----~L~~n~~L~~ 97 (185)
T 1io0_A 34 NDPDLEEVNLNNIMN-IPV-----------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE----MLKVNNTLKS 97 (185)
T ss_dssp TCTTCCEEECTTCTT-CCH-----------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH----HHHHCSSCCE
T ss_pred cCCCCCEEEecCCCC-CCH-----------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH----HHHhCCCcCE
Confidence 3568999999998 7 651 1100 012245678999999999998742 222 4556688999
Q ss_pred EeCcCCCCCCc----ChhhhCCCCCCCEEeC--CCCcCC
Q 048227 147 LNLGDNRFNDS----ILRYLNTLTSLTTLIL--RFNNIE 179 (179)
Q Consensus 147 L~Ls~N~l~g~----iP~~l~~l~~L~~L~L--s~N~lt 179 (179)
|+|++|.++.. +...+...++|++|+| ++|.++
T Consensus 98 L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred EECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 99999999864 5677788899999999 889874
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.57 E-value=1.4e-05 Score=65.56 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=48.3
Q ss_pred CCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCc----ChhhhCCCCCCCEEeCCCCcCC
Q 048227 112 PFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDS----ILRYLNTLTSLTTLILRFNNIE 179 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~lt 179 (179)
.+++|++|+|.+|.+....+.. +.....+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEM-FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHH-HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHH-HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4678888888888877544330 00224578999999999999864 4455556789999999998874
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.56 E-value=2.2e-05 Score=67.22 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=46.4
Q ss_pred CCCCCcEEeccCCccCcc----ccCccccccCcccCCCEEeCcCCCCC----CcChhhhCCCCCCCEEeCCCCcC
Q 048227 112 PFEELQNLDLSGNRFEGL----YENKTYDSFGSLKQLKILNLGDNRFN----DSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~L~~L~Ls~N~l~----g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
.+++|++|+|++|.+++. ++. .+..+++|++|++++|.++ +.++..+.++++|++|++++|.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred hCCCCCEEECccccccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 578888888888887664 433 4456788888888888887 34555666788888888887754
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=0.00024 Score=56.75 Aligned_cols=58 Identities=24% Similarity=0.231 Sum_probs=48.4
Q ss_pred CCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCC-EEeCCC
Q 048227 113 FEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLT-TLILRF 175 (179)
Q Consensus 113 l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~-~L~Ls~ 175 (179)
+++|+.|+|++|+++. ||.. .|..+++|+.++|++| ++..-+..|.++++|+ .+++.+
T Consensus 225 ~~~L~~l~L~~n~i~~-I~~~---aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-IPDF---TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCE-ECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcce-ecHh---hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 6899999999999886 5553 7889999999999998 7744456789999999 999876
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.43 E-value=6.8e-05 Score=55.53 Aligned_cols=84 Identities=11% Similarity=0.131 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCc-cCccccCccccccCcc----cCCCEEeC
Q 048227 75 RRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNR-FEGLYENKTYDSFGSL----KQLKILNL 149 (179)
Q Consensus 75 ~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~-l~g~iP~~~~~~l~~l----~~L~~L~L 149 (179)
.++++||+++.. +++. ....+..+++|++|+|+++. ++.. ++..++.+ ++|++|+|
T Consensus 61 ~~L~~LDLs~~~-Itd~--------------GL~~L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~L 121 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI--------------GFDHMEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEI 121 (176)
T ss_dssp CCEEEEEEESCC-CCGG--------------GGGGGTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEE
T ss_pred ceEeEEeCcCCC-ccHH--------------HHHHhcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEc
Confidence 479999999988 7621 11235779999999999985 6642 22255554 47999999
Q ss_pred cCC-CCCCcChhhhCCCCCCCEEeCCCCc
Q 048227 150 GDN-RFNDSILRYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 150 s~N-~l~g~iP~~l~~l~~L~~L~Ls~N~ 177 (179)
+++ +++..--..+.++++|++|+|++..
T Consensus 122 s~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp ESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 997 4876555677889999999998763
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.42 E-value=2.6e-05 Score=66.67 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=43.9
Q ss_pred CCCCcEEeccCCccCccccCcccccc-CcccCCCEEeCcCCCCCCcChh-hhCCCCCCCEEeCCCCcC
Q 048227 113 FEELQNLDLSGNRFEGLYENKTYDSF-GSLKQLKILNLGDNRFNDSILR-YLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 113 l~~L~~L~Ls~N~l~g~iP~~~~~~l-~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L~Ls~N~l 178 (179)
+++|++|+|++|.+++..+. .+ ..+++|++|++++|.+++..+. .+..+++|++|++++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~----~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMH----HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHH----HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHH----HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 66788888888887664443 44 5678888888888888655444 334578888888888765
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.25 E-value=5.8e-05 Score=64.50 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=42.1
Q ss_pred CCCCCcEEeccCCccCccccCccccccCc-ccCCCEEeCcCCCCCCcChhhh-CCCCCCCEEeCCCCcCC
Q 048227 112 PFEELQNLDLSGNRFEGLYENKTYDSFGS-LKQLKILNLGDNRFNDSILRYL-NTLTSLTTLILRFNNIE 179 (179)
Q Consensus 112 ~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~-l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~Ls~N~lt 179 (179)
.+++|++|++++ .+++..+. .+.. +++|++|+|++|.+++..+..+ ..+++|++|+|++|+++
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~----~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFE----YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHH----HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred hCCCccEEeecC-cccHHHHH----HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 345566666644 44443333 4444 7788888888888877666555 66888888888888763
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0026 Score=44.40 Aligned_cols=55 Identities=20% Similarity=0.135 Sum_probs=41.1
Q ss_pred EEeccCCccC-ccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 118 NLDLSGNRFE-GLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 118 ~L~Ls~N~l~-g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
.++.+++.++ ..+|. .+ .++|++|+|++|+|+..-+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666665 23665 33 24689999999999955556678899999999999976
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.29 E-value=0.0018 Score=47.81 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=47.9
Q ss_pred CCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCC-CCCcChhhhCCC----CCCCEEeCCCCc-CC
Q 048227 114 EELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNR-FNDSILRYLNTL----TSLTTLILRFNN-IE 179 (179)
Q Consensus 114 ~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~Ls~N~-lt 179 (179)
.+|++||++++.++. .++..+..+++|++|+|+++. ++..--..+..+ ++|++|+|+++. +|
T Consensus 61 ~~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 469999999998764 333378899999999999985 776544566665 479999999874 54
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.08 E-value=0.016 Score=47.78 Aligned_cols=64 Identities=8% Similarity=0.105 Sum_probs=33.4
Q ss_pred ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCcC
Q 048227 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNNI 178 (179)
Q Consensus 108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 178 (179)
..|..|++|+.++|. +.++- |+.. .|.++++|+.++|..| ++-.-+..|.++ +|+.+++.+|.+
T Consensus 294 ~aF~~c~~L~~l~l~-~~i~~-I~~~---aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 294 YCLEGCPKLARFEIP-ESIRI-LGQG---LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TTTTTCTTCCEECCC-TTCCE-ECTT---TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred HHhhCCccCCeEEeC-CceEE-Ehhh---hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 345556666666665 23433 3321 4555666666666443 442333455566 666666666543
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.93 E-value=0.025 Score=46.61 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=46.6
Q ss_pred CccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227 107 MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 107 ~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 176 (179)
...|.+|++|+.++++.|+++. ||.. .|. ..+|+.+.+..+ ++-.-...|.++++|+.+++..|
T Consensus 173 ~~aF~~c~~L~~l~l~~n~l~~-I~~~---aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTKITK-LPAS---TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp SSTTTTCTTCCEEECTTSCCSE-ECTT---TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred HHHhhCcccCCeeecCCCcceE-echh---hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence 4568889999999999998886 6652 333 578888888744 66344456778888888888654
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.54 E-value=0.0079 Score=49.11 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=43.9
Q ss_pred CCCCCcEEeccC--CccCccccCcccc-cc--CcccCCCEEeCcCCCCCCcChhhhC---CCCCCCEEeCCCCcCC
Q 048227 112 PFEELQNLDLSG--NRFEGLYENKTYD-SF--GSLKQLKILNLGDNRFNDSILRYLN---TLTSLTTLILRFNNIE 179 (179)
Q Consensus 112 ~l~~L~~L~Ls~--N~l~g~iP~~~~~-~l--~~l~~L~~L~Ls~N~l~g~iP~~l~---~l~~L~~L~Ls~N~lt 179 (179)
.+++|++|+|+. |...|........ .+ ..+++|++|+|.+|.+....+..+. .+++|++|+|+.|+++
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 578899988853 2322210000000 12 3578999999999998865555443 5789999999999874
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.47 E-value=0.0092 Score=44.76 Aligned_cols=91 Identities=10% Similarity=0.148 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCC-CCCCCCCcCccCCCCCccc-cCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcC
Q 048227 74 TRRVMQLSLNKT-TKFNDSNYNLFYGGPSASL-LNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD 151 (179)
Q Consensus 74 ~~~v~~l~L~~~-~~l~~~~~n~~~g~ip~~~-~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~ 151 (179)
...++.|+|+++ . +.+ .+. .-...+..-+.|+.|+|++|++...--..-.+.+..-+.|++|+|+.
T Consensus 40 n~~L~~L~L~~nn~-igd-----------~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 40 DTDLKEVNINNMKR-VSK-----------ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp CSSCCEEECTTCCS-SCH-----------HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred CCCccEEECCCCCC-CCH-----------HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 468899999875 5 540 000 00112344578999999999987422110000344557899999999
Q ss_pred CCCCCc----ChhhhCCCCCCCEEeCCCC
Q 048227 152 NRFNDS----ILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 152 N~l~g~----iP~~l~~l~~L~~L~Ls~N 176 (179)
|+|... +-+.+..-+.|++|+|++|
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 999853 3345566677999999865
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.49 E-value=0.029 Score=42.00 Aligned_cols=93 Identities=15% Similarity=0.204 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCCCCCCCCCcCccCCCCCccccCCccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCC-
Q 048227 74 TRRVMQLSLNKTTKFNDSNYNLFYGGPSASLLNMSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDN- 152 (179)
Q Consensus 74 ~~~v~~l~L~~~~~l~~~~~n~~~g~ip~~~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N- 152 (179)
...++.|+|+++. +.+- |... + ...+..-+.|++|+|+.|+|+..--..-.+.+..-+.|++|+|++|
T Consensus 69 N~~L~~L~L~~n~-igd~------ga~a---l-A~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 69 SKHIEKFSLANTA-ISDS------EARG---L-IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp CSCCCEEECTTSC-CBHH------HHTT---H-HHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred CCCcCEEEccCCC-CChH------HHHH---H-HHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 4789999999998 7511 0000 0 0112233679999999999874211100113555577999999865
Q ss_pred --CCCC----cChhhhCCCCCCCEEeCCCCc
Q 048227 153 --RFND----SILRYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 153 --~l~g----~iP~~l~~l~~L~~L~Ls~N~ 177 (179)
.+.. .|-+.+..-+.|+.|+++.|.
T Consensus 138 ~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 138 QSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp SCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3332 244555666789999998775
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.47 E-value=0.1 Score=42.34 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=38.4
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 176 (179)
.|.++++|+.++|..+ ++- |+.. .|.++++|+.+++..| ++-.-...|.++++|+.+++..+
T Consensus 315 aF~~c~~L~~i~lp~~-v~~-I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEE-IGKR---SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCE-ECTT---TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hhcCCCCCCEEEeCCc-ccE-EhHH---hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 4566677777777543 443 3321 5677777777777665 55223356777778887777543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.45 E-value=0.21 Score=40.48 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=41.1
Q ss_pred ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCCc
Q 048227 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFNN 177 (179)
Q Consensus 108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 177 (179)
..|.++.+|+.++|..+ ++. |... .|.++.+|+.+.+..+ ++-.-...|.++++|+.+++.+|.
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~-I~~~---aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQ-ILDD---AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCE-ECTT---TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred eeecCCCCcCEEEeCCc-ccE-ehHh---HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 34666777777777643 333 3321 5777788888888654 552223567888888888887653
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.40 E-value=0.14 Score=41.09 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=42.4
Q ss_pred ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcCh-hhhCCCCCCCEEeCCCC
Q 048227 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSIL-RYLNTLTSLTTLILRFN 176 (179)
Q Consensus 108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N 176 (179)
..|..+++|+.+++.++.++. |+.. .|.++.+|+.++|..+ ++ .|+ ..|.++++|+.+.+..+
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~-I~~~---aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIET-LEPR---VFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCE-ECTT---TTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccccce-ehhh---hhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 346677788888887777765 4332 6777788888888654 55 343 46777888887777543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.22 E-value=0.75 Score=36.75 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=43.4
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 176 (179)
.|.++..|+.+.+..+ +.. ++.. .|..+++|+.+.+..+.++-.-...|.++++|+.+.|..+
T Consensus 258 aF~~~~~l~~i~l~~~-i~~-i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKT-VPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSE-ECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccceeehhcccccccc-cee-cccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 3455566666666433 332 3321 5778899999999988888444567889999999998654
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.06 E-value=1.3 Score=35.77 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=45.1
Q ss_pred ccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227 108 SLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 108 ~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 176 (179)
..|.+++.|+.+.+. +.++. |+.. .|.++.+|+.+++..+ ++-.-...|.++++|+.+.+..+
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~-I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITE-LPES---VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCE-ECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred cccccccccccccCC-Ccccc-cCce---eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 456778888888885 34443 5442 6788899999999865 55333457888999999988644
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.05 E-value=1 Score=36.34 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=44.3
Q ss_pred cCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcCCCCCCcChhhhCCCCCCCEEeCCCC
Q 048227 109 LFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGDNRFNDSILRYLNTLTSLTTLILRFN 176 (179)
Q Consensus 109 ~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 176 (179)
.|..+.+|+.+.+..+ ++. |+.. .|.++++|+.+++..+ ++-.-...|.++++|+.+.+..|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~-I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKF-IGEE---AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCE-ECTT---TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccc-cce-echh---hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 3566778888887654 443 4432 6788899999999754 66333467889999999998765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.25 E-value=66 Score=20.53 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=24.0
Q ss_pred CccCCCCCCCcEEeccCCccCccccCccccccCcccCCCEEeCcC
Q 048227 107 MSLFYPFEELQNLDLSGNRFEGLYENKTYDSFGSLKQLKILNLGD 151 (179)
Q Consensus 107 ~~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~L~~L~Ls~ 151 (179)
...|.+++.|+.+.+..+ ++. |-.. .|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~-Ig~~---aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGL-LYDG---MFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSC-CCTT---SSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hhe-EcHH---HHhccCCccEEEEcC
Confidence 345777777887776553 222 2211 567777777777654
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.53 E-value=22 Score=16.16 Aligned_cols=9 Identities=33% Similarity=1.361 Sum_probs=6.9
Q ss_pred CCCCCccceE
Q 048227 60 DCCDDWEGVK 69 (179)
Q Consensus 60 ~~C~~w~Gv~ 69 (179)
..| +|.|..
T Consensus 6 gac-swrgle 14 (23)
T 3ox7_P 6 GAC-SWRGLE 14 (26)
T ss_pred ccc-ccccch
Confidence 468 999875
Done!