BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048228
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 186 EMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV---LIAKS 242
E+ R + A A GN D ++ L+ + +V A D G T LH A+ G EV LI+K
Sbjct: 3 ELGKRLIEA-AENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 243 PSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGR 302
++ +S G T LH G + V ++L+ + G V KD ++GR
Sbjct: 61 AD-VNAKDSDGRTPLHHAA----ENGHKEV---VKLL--ISKGADVNAKD------SDGR 104
Query: 303 TALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQ 358
T LH A +EN +V+LL++ ++N D +G TPLDL ++H ++L KQ
Sbjct: 105 TPLHHA-AENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 21/175 (12%)
Query: 186 EMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSP 243
E+ R + A A GN D ++ LL + +V A D G T LH A+ G EV L+
Sbjct: 3 ELGKRLIEA-AENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 244 SLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRT 303
+ + +S G T LH+ G + V ++L+ L G KD ++G+T
Sbjct: 61 ADPNAKDSDGKTPLHLAAEN----GHKEV---VKLL--LSQGADPNAKD------SDGKT 105
Query: 304 ALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQ 358
LHLA +EN +V+LL++ + N D +G TPLDL ++H ++L KQ
Sbjct: 106 PLHLA-AENGHKEVVKLLLS-QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 25/177 (14%)
Query: 186 EMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQ---VEVLIAKS 242
E+ R + A A GN D ++ L+ + +V A D G T LH A+ G V++LI+K
Sbjct: 3 ELGKRLIEA-AENGNKDRVKDLIENGADVNA-SDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 243 PSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVS-GKIVEVKDIINVTNNNG 301
++ +S G T LH + H+ ++++ L+S G V KD ++G
Sbjct: 61 AD-VNAKDSDGRTPLHYAA---------KEGHK-EIVKLLISKGADVNAKD------SDG 103
Query: 302 RTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQ 358
RT LH A E + +V+LL++ ++N D +G TPLDL ++H ++L KQ
Sbjct: 104 RTPLHYAAKEGHK-EIVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 25/181 (13%)
Query: 186 EMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSP 243
E+ R + A A GN D ++ LL + + A D G T LH A+ G E+ L+
Sbjct: 3 ELGKRLIEA-AENGNKDRVKDLLENGADPNA-SDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 244 SLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRT 303
+ + +S G T LH G + + ++L+ L G KD ++GRT
Sbjct: 61 ADPNAKDSDGRTPLHYAAEN----GHKEI---VKLL--LSKGADPNAKD------SDGRT 105
Query: 304 ALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAG 363
LH A +EN +V+LL++ + N D +G TPLDL ++H +E ++K L G
Sbjct: 106 PLHYA-AENGHKEIVKLLLSK-GADPNTSDSDGRTPLDLAREH----GNEEIVKLLEKQG 159
Query: 364 G 364
G
Sbjct: 160 G 160
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 22/165 (13%)
Query: 196 ARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVL--IAKSPSLISVTNSHG 253
AR G D +R L+ + +V A +D G T LH A+ G +E++ + K+ + ++ + G
Sbjct: 10 ARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 254 DTFLHMVVAGFRSPGFRRVDHQIQLMEQLV-SGKIVEVKDIINVTNNNGRTALHLAVSEN 312
T LH+ R H ++++E L+ +G V KD +G T LHLA E
Sbjct: 69 YTPLHLAA---------REGH-LEIVEVLLKAGADVNAKD------KDGYTPLHLAAREG 112
Query: 313 IQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIK 357
+VE+L+ + ++N QD G TP DL + +E+L K
Sbjct: 113 -HLEIVEVLLKAGA-DVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N + +G T LHLA E +VE+L+ + ++N +D +G TPL L + E
Sbjct: 61 VNAKDKDGYTPLHLAAREG-HLEIVEVLLKAGA-DVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 354 ILIKQLISAGGISNCQDNVAR 374
+L+K AG N QD +
Sbjct: 119 VLLK----AGADVNAQDKFGK 135
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N + +G T LHLA E +VE+L+ + ++N
Sbjct: 5 KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG-HLEIVEVLLKAGA-DVN 62
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQD 370
+D +G TPL L + E+L+K AG N +D
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAKD 98
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 22/165 (13%)
Query: 196 ARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVL--IAKSPSLISVTNSHG 253
AR G D +R L+ + +V A +D G T LH A+ G +E++ + K+ + ++ + G
Sbjct: 10 ARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 254 DTFLHMVVAGFRSPGFRRVDHQIQLMEQLV-SGKIVEVKDIINVTNNNGRTALHLAVSEN 312
T LH+ R H ++++E L+ +G V KD +G T LHLA E
Sbjct: 69 YTPLHLAA---------REGH-LEIVEVLLKAGADVNAKD------KDGYTPLHLAAREG 112
Query: 313 IQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIK 357
+VE+L+ + ++N QD G TP DL + +E+L K
Sbjct: 113 -HLEIVEVLLKAGA-DVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N + +G T LHLA E +VE+L+ + ++N +D +G TPL L + E
Sbjct: 61 VNAKDKDGYTPLHLAAREG-HLEIVEVLLKAGA-DVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 354 ILIKQLISAGGISNCQDNVAR 374
+L+K AG N QD +
Sbjct: 119 VLLK----AGADVNAQDKFGK 135
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N + +G T LHLA E +VE+L+ + ++N
Sbjct: 5 KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG-HLEIVEVLLKAGA-DVN 62
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQD 370
+D +G TPL L + E+L+K AG N +D
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAKD 98
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 140/351 (39%), Gaps = 61/351 (17%)
Query: 21 SPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVAR 80
+P+ AA GH +VK LL + N + T+ + E + + +S A
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA- 140
Query: 81 KLLHDCETKKGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDIL 140
C TKKG L+ AA G VR + LL+RD G+ G+T L
Sbjct: 141 -----CMTKKGFTP----------LHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTP-L 183
Query: 141 YAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGN 200
+ A N ++ +LLL PR GG + Y+ +H A+
Sbjct: 184 HVAVHHNNLDIVKLLL-----PR-----GGSPHSPAWNGYT---------PLHIAAKQNQ 224
Query: 201 LDILRQLL--GDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTF 256
+++ R LL G N VQG T LH A+ G E+ L+ + ++ N G T
Sbjct: 225 VEVARSLLQYGGSANA---ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 281
Query: 257 LHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCN 316
LH+V P V+ +++ +++ T G T LH+A S
Sbjct: 282 LHLVAQEGHVP---------------VADVLIKHGVMVDATTRMGYTPLHVA-SHYGNIK 325
Query: 317 LVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISN 367
LV+ L+ + ++N + G +PL Q + +L+K S +S+
Sbjct: 326 LVKFLLQHQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 116/274 (42%), Gaps = 44/274 (16%)
Query: 105 LYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRC 164
L+ AA AG K LLQ + V + + T L+ AAR ++ + +LLL+N P
Sbjct: 51 LHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTP-LHCAARIGHTNMVKLLLENNANPNL 108
Query: 165 CLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGST 224
++G + +H AR G+++ + LL + E A +G T
Sbjct: 109 ATTAG-------------------HTPLHIAAREGHVETVLALL-EKEASQACMTKKGFT 148
Query: 225 ILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVV---------------AGFRSP 267
LH A+ G+V V L+ + + + +G T LH+ V SP
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 208
Query: 268 ---GFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTV 324
G+ + + + V+ +++ N + G T LHLA E +V LL++
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG-HAEMVALLLS- 266
Query: 325 PSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQ 358
N N+ + G+TPL L+ Q +++LIK
Sbjct: 267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 26/153 (16%)
Query: 21 SPIDFAAANGHYELVKELL--HLDTNLLIK--LTSLRRIRRLETVWDDEEQFDDVAKCRS 76
+P+ AA GH E+V LL + NL K LT L + Q V
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV----------AQEGHVPVADV 296
Query: 77 SVARKLLHDCETKKGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGV 136
+ ++ D T+ G+ L+ A+ G+++ VK LLQ V + + G
Sbjct: 297 LIKHGVMVDATTRMGYTP----------LHVASHYGNIKLVKFLLQHQA-DVNAKTKLGY 345
Query: 137 TDILYAAARSKNSEVFRLLLDNAVAPRCCLSSG 169
+ L+ AA+ ++++ LLL N +P S G
Sbjct: 346 SP-LHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 19/133 (14%)
Query: 192 VHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVT 249
+H AR G+L++++ LL +V A +D G T LH A+ G +EV L+ ++ + ++
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 250 NSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAV 309
+ +G T LH+ R H + L +G V KD NGRT LHLA
Sbjct: 65 DKNGRTPLHLAA---------RNGHLEVVKLLLEAGADVNAKD------KNGRTPLHLA- 108
Query: 310 SENIQCNLVELLM 322
+ N +V+LL+
Sbjct: 109 ARNGHLEVVKLLL 121
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 287 IVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQH 346
++E +N + NGRT LHLA + N +V+LL+ + ++N +D G TPL L
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLA-ARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAA-- 76
Query: 347 PRSASSEILIKQLISAGGISNCQDNVARNAI 377
R+ E+ +K L+ AG N +D R +
Sbjct: 77 -RNGHLEV-VKLLLEAGADVNAKDKNGRTPL 105
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 300 NGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQL 359
NGRT LHLA + N +V+LL+ + ++N +D G TPL L R+ E+ +K L
Sbjct: 1 NGRTPLHLA-ARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAA---RNGHLEV-VKLL 54
Query: 360 ISAGGISNCQDNVARNAI 377
+ AG N +D R +
Sbjct: 55 LEAGADVNAKDKNGRTPL 72
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 196 ARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVL--IAKSPSLISVTNSHG 253
A G D +R L+ + +V A D G T LH A+ GQ+E++ + K+ + ++ ++S G
Sbjct: 14 AAAGQDDEVRILMANGADVNATDD-NGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 254 DTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENI 313
T LH+ D ++++E L+ +N + G T LHLA
Sbjct: 73 ITPLHLAA----------YDGHLEIVEVLLKHGA-----DVNAYDRAGWTPLHLAALSG- 116
Query: 314 QCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEIL 355
Q +VE+L+ ++N QD G+T D+ + +EIL
Sbjct: 117 QLEIVEVLLK-HGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N T++NG T LHLA + N Q +VE+L+ ++N
Sbjct: 9 KLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAA-NGQLEIVEVLLK-NGADVN 66
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIKQ 358
D G+TPL L E+L+K
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKH 94
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 71/181 (39%), Gaps = 53/181 (29%)
Query: 196 ARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDT 255
AR G D +R L+ + +V A+ D QGST LH A+ G P ++ V HG
Sbjct: 22 ARAGQDDEVRILMANGADVNAHDD-QGSTPLHLAAWIGH--------PEIVEVLLKHGAD 72
Query: 256 FLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQC 315
+N + +G T LHLA ++N
Sbjct: 73 --------------------------------------VNARDTDGWTPLHLA-ADNGHL 93
Query: 316 NLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARN 375
+VE+L+ + ++N QD G+TPL L E+L+K G N QD +
Sbjct: 94 EIVEVLLKYGA-DVNAQDAYGLTPLHLAADRGHLEIVEVLLKH----GADVNAQDKFGKT 148
Query: 376 A 376
A
Sbjct: 149 A 149
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N ++ G T LHLA +VE+L+ ++N
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIG-HPEIVEVLLK-HGADVN 74
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQD 370
+D +G TPL L + E+L+K G N QD
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKY----GADVNAQD 110
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 118/296 (39%), Gaps = 45/296 (15%)
Query: 104 LLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAP- 162
LL A DV V++LL+ + F E E G T L+ A + ++ LLL + P
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSREDIVELLLRHGADPV 86
Query: 163 ----------------------RCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVA---- 196
+ LS G + E ++ F + V A+
Sbjct: 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 146
Query: 197 RGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTF 256
RG N+++ R+ D E + G+T L A+ +G VEVL + + N+ +
Sbjct: 147 RGANVNLRRKTKEDQERLRK----GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 202
Query: 257 LHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCN 316
+ ++ S D ++ + L+ +V NV G+T L LAV E
Sbjct: 203 RNALIHALLSSD----DSDVEAITHLLLDHGADV----NVRGERGKTPLILAV-EKKHLG 253
Query: 317 LVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNV 372
LV+ L+ I +N D +G T L L + +E+L K+ G ++C D V
Sbjct: 254 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR----GASTDCGDLV 305
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 238 LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVT 297
I + SL + T+ G T LH+ A RS +R ++E N+
Sbjct: 42 FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKR---------------LLEASADANIQ 86
Query: 298 NNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIK 357
+N GRT LH AVS + Q + ++L+ + +L+ + +G TPL L + + E +++
Sbjct: 87 DNMGRTPLHAAVSADAQ-GVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGMLE 141
Query: 358 QLISAGGISNCQDNVARNAI 377
LI++ N D++ ++A+
Sbjct: 142 DLINSHADVNAVDDLGKSAL 161
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 282 LVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPL 340
++S I + + N T+ G TALHLA + + LL S + NIQD G TPL
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEA--SADANIQDNMGRTPL 94
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 238 LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVT 297
I + SL + T+ G+T LH+ RS +R ++E N+
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKR---------------LLEASADANIQ 54
Query: 298 NNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIK 357
+N GRT LH AVS + Q + ++L+ + +L+ + +G TPL L + + E +++
Sbjct: 55 DNMGRTPLHAAVSADAQ-GVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGMLE 109
Query: 358 QLISAGGISNCQDNVARNAI 377
LI++ N D++ ++A+
Sbjct: 110 DLINSHADVNAVDDLGKSAL 129
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 282 LVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPL 340
++S I + + N T+ G TALHLA + LL S + NIQD G TPL
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPL 62
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 238 LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVT 297
I + SL + T+ G+T LH+ RS +R ++E N+
Sbjct: 42 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKR---------------LLEASADANIQ 86
Query: 298 NNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIK 357
+N GRT LH AVS + Q + ++L+ + +L+ + +G TPL L + + E +++
Sbjct: 87 DNMGRTPLHAAVSADAQ-GVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGMLE 141
Query: 358 QLISAGGISNCQDNVARNAI 377
LI++ N D++ ++A+
Sbjct: 142 DLINSHADVNAVDDLGKSAL 161
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 282 LVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPL 340
++S I + + N T+ G TALHLA + LL S + NIQD G TPL
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPL 94
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 238 LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVT 297
I + SL + T+ G+T LH+ RS +R ++E N+
Sbjct: 43 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKR---------------LLEASADANIQ 87
Query: 298 NNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIK 357
+N GRT LH AVS + Q + ++L+ + +L+ + +G TPL L + + E +++
Sbjct: 88 DNMGRTPLHAAVSADAQ-GVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGMLE 142
Query: 358 QLISAGGISNCQDNVARNAI 377
LI++ N D++ ++A+
Sbjct: 143 DLINSHADVNAVDDLGKSAL 162
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 282 LVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPL 340
++S I + + N T+ G TALHLA + LL S + NIQD G TPL
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPL 95
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 118/296 (39%), Gaps = 45/296 (15%)
Query: 104 LLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAP- 162
LL A DV V++LL+ + F E E G T L+ A + ++ LLL + P
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSREDIVELLLRHGADPV 66
Query: 163 ----------------------RCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVA---- 196
+ LS G + E ++ F + V A+
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 197 RGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTF 256
RG N+++ R+ D E + G+T L A+ +G VEVL + + N+ +
Sbjct: 127 RGANVNLRRKTKEDQERLRK----GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182
Query: 257 LHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCN 316
+ ++ S D ++ + L+ +V NV G+T L LAV E
Sbjct: 183 RNALIHALLSSD----DSDVEAITHLLLDHGADV----NVRGERGKTPLILAV-EKKHLG 233
Query: 317 LVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNV 372
LV+ L+ I +N D +G T L L + +E+L K+ G ++C D V
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR----GASTDCGDLV 285
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N + +G T LHLA E +VE+L+ + ++N +D +G TPL L + E
Sbjct: 73 VNAKDKDGYTPLHLAAREG-HLEIVEVLLKAGA-DVNAKDKDGYTPLHLAAREGHLEIVE 130
Query: 354 ILIKQLISAGGISNCQDNVARNA 376
+L+K AG N QD + A
Sbjct: 131 VLLK----AGADVNAQDKFGKTA 149
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N + +G T LHLA E +VE+L+ + ++N
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG-HLEIVEVLLKAGA-DVN 74
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQD 370
+D +G TPL L + E+L+K AG N +D
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAKD 110
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 238 LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVT 297
I + SL + T+ G+T LH+ RS +R ++E +
Sbjct: 7 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKR---------------LLEASADAXIQ 51
Query: 298 NNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIK 357
+N GRT LH AVS + Q + ++L+ + +L+ + +G TPL L + + E +++
Sbjct: 52 DNMGRTPLHAAVSADAQ-GVFQILLRNRATDLDARMHDGTTPLILAAR----LALEGMLE 106
Query: 358 QLISAGGISNCQDNVARNAI 377
LI++ N D++ ++A+
Sbjct: 107 DLINSHADVNAVDDLGKSAL 126
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 29/189 (15%)
Query: 191 AVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV---LIAKSPSLIS 247
A+H N+D+++ L+ + N+ D +G LH+A+ G +++ LI++ +
Sbjct: 76 ALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VG 133
Query: 248 VTNSHGDTFLHMVVA--------------GFRSPGFRRVDHQIQLMEQ---LVSGKIVEV 290
NS GDT L + G R+ + +I L + L SG I +V
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV 193
Query: 291 KDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSA 350
+ +G TALH+A ++ +++LL+ ++NI+D +G TPL +
Sbjct: 194 RHA-----KSGGTALHVAAAKGY-TEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 351 SSEILIKQL 359
+ IL++ L
Sbjct: 247 ACRILVENL 255
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 192 VHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVL--IAKSPSLISVT 249
+H A G+L+I+ LL + +V A +D G T LH A+ RG +E++ + K+ + ++ +
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNA-KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109
Query: 250 NSHGDTFLHM 259
+SHG T LH+
Sbjct: 110 DSHGFTPLHL 119
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N ++ G T LHLA +VE+L+ ++N D G TPL L + E
Sbjct: 73 VNAKDSLGVTPLHLAARRG-HLEIVEVLLK-NGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 354 ILIKQLISAGGISNCQDNVARNA 376
+L+K G N QD + A
Sbjct: 131 VLLKN----GADVNAQDKFGKTA 149
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 164 CCLSSGGEFEEK----LSDSYSVFKWEMMNR-AVHAVARGGNLDILRQLLGDCENVLAYR 218
C L+ G+ EE L+D + + +R A+H G+ +I+ LL + +
Sbjct: 12 CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDK 70
Query: 219 DVQGSTILHSASGRGQVEVLIA--KSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQI 276
D G + LH A+ G+ E++ A + ++ N +G T LH + R H+I
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR--------HEI 122
Query: 277 QLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEG 336
+M L G + KD T A+H A ++ ++ +L+ + + NIQD EG
Sbjct: 123 AVM-LLEGGANPDAKDHYEAT------AMHRAAAKG-NLKMIHILLYYKA-STNIQDTEG 173
Query: 337 MTPLDLLKQHPRSASSEILIKQ 358
TPL L R +++L+ Q
Sbjct: 174 NTPLHLACDEERVEEAKLLVSQ 195
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N T+N+G T LHLA S N +VE+L+ ++N
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAAS-NGHLEIVEVLLK-NGADVN 74
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDN 371
D G+TPL L E+L+K G N DN
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKH----GADVNAYDN 111
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 22/143 (15%)
Query: 234 QVEVLIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDI 293
+V +L+A ++ T++ G T LH+ + + ++++E L+
Sbjct: 29 EVRILMANGAD-VNATDNDGYTPLHLAAS----------NGHLEIVEVLLKNGA-----D 72
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N ++ G T LHLA + +VE+L+ ++N D +G TPL L ++ E
Sbjct: 73 VNASDLTGITPLHLAAATG-HLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 354 ILIKQLISAGGISNCQDNVARNA 376
+L+K G N QD + A
Sbjct: 131 VLLKH----GADVNAQDKFGKTA 149
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 164 CCLSSGGEFEEK----LSDSYSVFKWEMMNR-AVHAVARGGNLDILRQLLGDCENVLAYR 218
C L+ G+ EE L+D + + +R A+H G+ +I+ LL + +
Sbjct: 11 CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDK 69
Query: 219 DVQGSTILHSASGRGQVEVLIA--KSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQI 276
D G + LH A+ G+ E++ A + ++ N +G T LH + R H+I
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR--------HEI 121
Query: 277 QLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEG 336
+M L G + KD T A+H A ++ ++ +L+ + + NIQD EG
Sbjct: 122 AVM-LLEGGANPDAKDHYEAT------AMHRAAAKG-NLKMIHILLYYKA-STNIQDTEG 172
Query: 337 MTPLDLLKQHPRSASSEILIKQ 358
TPL L R +++L+ Q
Sbjct: 173 NTPLHLACDEERVEEAKLLVSQ 194
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Query: 234 QVEVLIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDI 293
+V +L+A + + +G T LHM A V H ++++E L+
Sbjct: 17 EVRILMANGAD-ANAYDHYGRTPLHMAAA---------VGH-LEIVEVLLRNGA-----D 60
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N + NG T LHLA S +VE+L+ + ++N +D G+TPL L E
Sbjct: 61 VNAVDTNGTTPLHLAASLG-HLEIVEVLLKYGA-DVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 354 ILIKQLISAGGISNCQDNVARNA 376
+L+K G N QD + A
Sbjct: 119 VLLKH----GADVNAQDKFGKTA 137
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 22/122 (18%)
Query: 140 LYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGG 199
L AAR+ + R+L+ N + D+Y + +H AR G
Sbjct: 18 LLEAARAGQDDEVRILMANGA------------DVNAEDTYG-------DTPLHLAARVG 58
Query: 200 NLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFL 257
+L+I+ LL + +V A D GST LH A+ RG +E+ ++ K + ++ ++ G T L
Sbjct: 59 HLEIVEVLLKNGADVNAL-DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPL 117
Query: 258 HM 259
H+
Sbjct: 118 HL 119
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N +N G T LHLA ++N +VE+L+ ++N +D EG TPL L E
Sbjct: 73 VNAWDNYGATPLHLA-ADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEIVE 130
Query: 354 ILIKQLISAGGISNCQDNVARNA 376
+L+K G N QD + A
Sbjct: 131 VLLKY----GADVNAQDKFGKTA 149
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N T+ G T LHLA +VE+L+ + ++N
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTG-HLEIVEVLLKYGA-DVN 74
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIKQ 358
D G TPL L + E+L+K
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKH 102
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 300 NGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQL 359
NGRT LHLA + N +V+LL+ + ++N +D G TPL L R+ E+ +K L
Sbjct: 1 NGRTPLHLA-ARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAA---RNGHLEV-VKLL 54
Query: 360 ISAGGISNCQDNVARNAI 377
+ AG N +D R +
Sbjct: 55 LEAGADVNAKDKNGRTPL 72
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 287 IVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQH 346
++E +N + NGRT LHLA + N +V+LL+ + ++N +D G TPL L
Sbjct: 21 LLEAGADVNAKDKNGRTPLHLA-ARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAA-- 76
Query: 347 PRSASSEILIKQLISAGG 364
R+ E+ +K L+ AG
Sbjct: 77 -RNGHLEV-VKLLLEAGA 92
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 22/165 (13%)
Query: 196 ARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVL--IAKSPSLISVTNSHG 253
AR G D +R L+ + +V A D G T LH A+ G +E++ + K+ + ++ +S G
Sbjct: 22 ARAGQDDEVRILMANGADVNA-SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 254 DTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENI 313
T LH+ A R ++++E L+ +N ++NG T LHLA NI
Sbjct: 81 VTPLHL--AADRG--------HLEVVEVLLKNGA-----DVNANDHNGFTPLHLAA--NI 123
Query: 314 -QCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIK 357
+VE+L+ ++N QD G T D+ + +EIL K
Sbjct: 124 GHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 202 DILRQLLGDCENVLA--YRDVQGSTILHSASGRGQVEVLIAK-----SPSLISVTNSHGD 254
+I LL ENV Y D G T H A G +EV+ + P L +TN G
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GV 108
Query: 255 TFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQ 314
T LH+ V G + + L+E +G V +KD N + LH A S
Sbjct: 109 TCLHLAV------GKKWFEVSQFLIE---NGASVRIKDKFN------QIPLHRAASVG-S 152
Query: 315 CNLVELLMTVPSINLNIQDGEGMTPL 340
L+ELL + +N QD +G TPL
Sbjct: 153 LKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 164 CCLSSGGEFEEK----LSDSYSVFKWEMMNR-AVHAVARGGNLDILRQLLGDCENVLAYR 218
C L+ G+ +E L+D + + +R A+H G+ +I+ LL + +
Sbjct: 11 CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDK 69
Query: 219 DVQGSTILHSASGRGQVEVLIA--KSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQI 276
D G + LH A+ G+ E++ A + ++ N +G T LH + R H+I
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR--------HEI 121
Query: 277 QLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEG 336
+M L G + KD + T A+H A ++ +V +L+ + + NIQD EG
Sbjct: 122 AVM-LLEGGANPDAKDHYDAT------AMHRAAAKG-NLKMVHILLFYKA-STNIQDTEG 172
Query: 337 MTPLDLLKQHPRSASSEILIKQ 358
TPL L R ++ L+ Q
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQ 194
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 202 DILRQLLGDCENVLA--YRDVQGSTILHSASGRGQVEVLIAK-----SPSLISVTNSHGD 254
+I LL ENV Y D G T H A G +EV+ + P L +TN G
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGV 108
Query: 255 TFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQ 314
T LH+ V G + + L+E +G V +KD N + LH A S
Sbjct: 109 TCLHLAV------GKKWFEVSQFLIE---NGASVRIKDKFN------QIPLHRAASVG-S 152
Query: 315 CNLVELLMTVPSINLNIQDGEGMTPL 340
L+ELL + +N QD +G TPL
Sbjct: 153 LKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 202 DILRQLLGDCENVLA--YRDVQGSTILHSASGRGQVEVLIAK-----SPSLISVTNSHGD 254
+I LL ENV Y D G T H A G +EV+ + P L +TN G
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGV 108
Query: 255 TFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQ 314
T LH+ V G + + L+E +G V +KD N + LH A S
Sbjct: 109 TCLHLAV------GKKWFEVSQFLIE---NGASVRIKDKFN------QIPLHRAASVG-S 152
Query: 315 CNLVELLMTVPSINLNIQDGEGMTPL 340
L+ELL + +N QD +G TPL
Sbjct: 153 LKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 25/202 (12%)
Query: 164 CCLSSGGEFEEK----LSDSYSVFKWEMMNR-AVHAVARGGNLDILRQLLGDCENVLAYR 218
C L+ G+ +E L+D + + +R A+H G+ +I+ LL + +
Sbjct: 11 CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDK 69
Query: 219 DVQGSTILHSASGRGQVEVLIA--KSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQI 276
D G + LH A+ G E++ A + ++ N +G T LH + R H+I
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR--------HEI 121
Query: 277 QLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEG 336
+M L G + KD + T A+H A ++ +V +L+ + + NIQD EG
Sbjct: 122 AVM-LLEGGANPDAKDHYDAT------AMHRAAAKG-NLKMVHILLFYKA-STNIQDTEG 172
Query: 337 MTPLDLLKQHPRSASSEILIKQ 358
TPL L R ++ L+ Q
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQ 194
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 183 FKWEMMNRAVHAVARGGNLDILRQLLG-DCENVLAYRDVQGSTILHSASGRG---QVEVL 238
F+ + +H +I LLG C+ L RD +G+T LH A +G V VL
Sbjct: 40 FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL--RDFRGNTPLHLACEQGCLASVGVL 97
Query: 239 I--AKSPSLISV---TNSHGDTFLHMV-VAGFRSPGFRRVDHQIQLMEQLVS-GKIVEVK 291
+P L S+ TN +G T LH+ + G+ + ++E LVS G V +
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGY-----------LGIVELLVSLGADVNAQ 146
Query: 292 DIINVTNNNGRTALHLAV 309
+ N GRTALHLAV
Sbjct: 147 EPCN-----GRTALHLAV 159
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 253 GDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSEN 312
GD+FLH+ + V Q V G + +N NN +T LHLAV N
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQ-------VKGDLA----FLNFQNNLQQTPLHLAVITN 56
Query: 313 IQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIK 357
Q + E L+ + ++D G TPL L + AS +L +
Sbjct: 57 -QPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 99
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 183 FKWEMMNRAVHAVARGGNLDILRQLLG-DCENVLAYRDVQGSTILHSASGRG---QVEVL 238
F+ + +H +I LLG C+ L RD +G+T LH A +G V VL
Sbjct: 37 FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL--RDFRGNTPLHLACEQGCLASVGVL 94
Query: 239 I--AKSPSLISV---TNSHGDTFLHMV-VAGFRSPGFRRVDHQIQLMEQLVS-GKIVEVK 291
+P L S+ TN +G T LH+ + G+ + ++E LVS G V +
Sbjct: 95 TQSCTTPHLHSILKATNYNGHTCLHLASIHGY-----------LGIVELLVSLGADVNAQ 143
Query: 292 DIINVTNNNGRTALHLAV 309
+ N GRTALHLAV
Sbjct: 144 EPCN-----GRTALHLAV 156
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 183 FKWEMMNR--AVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRG--QVEVL 238
FK E N+ +HA A G++DI L+ N+ + Q + ++ +A V+ L
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 239 IAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTN 298
I K+ +L+ ++ G T LH+ G V ++ L+S ++V N +
Sbjct: 64 I-KAGALVDPKDAEGSTCLHLAA----KKGHYEV------VQYLLSNGQMDV----NCQD 108
Query: 299 NNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGE 335
+ G T + + +E +LV+LL++ S ++NI+D E
Sbjct: 109 DGGWTPM-IWATEYKHVDLVKLLLSKGS-DINIRDNE 143
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N ++ +G T LHLA +VE+L+ + ++N D +G TPL L + E
Sbjct: 73 VNASDKSGWTPLHLAAYRG-HLEIVEVLLKYGA-DVNAMDYQGYTPLHLAAEDGHLEIVE 130
Query: 354 ILIKQLISAGGISNCQDNVARNA 376
+L+K G N QD + A
Sbjct: 131 VLLKY----GADVNAQDKFGKTA 149
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N + G T LHLA + +VE+L+ ++N
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYD-HLEIVEVLLK-HGADVN 74
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNA 376
D +G TPL L E+L+K G N QD + A
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKH----GADVNAQDKFGKTA 116
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 189 NRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQ---VEVLIAKSPSL 245
N +H AR G LD L+ LL + + + D +G+ LH A+ G VE L+ + S
Sbjct: 71 NAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 246 ISVTNSHGDT 255
+ N GDT
Sbjct: 130 VGHRNHKGDT 139
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N + +G T LHLA +VE+L+ + ++N
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLG-HLEIVEVLLKYGA-DVN 74
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNA 376
+D G+TPL L E+L+K G N QD + A
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKH----GADVNAQDKFGKTA 116
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N + G T LHLA + N +VE+L+ ++N
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLA-AMNDHLEIVEVLLK-NGADVN 74
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNA 376
D G TPL L+ + E+L+K G N QD + A
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKH----GADVNAQDKFGKTA 116
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 192 VHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQ---VEVLIAKSPSLISV 248
+H AR G LD L+ LL + +V D +G+ LH A+ G VE L+ + S +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 249 TNSHGDT 255
N GDT
Sbjct: 133 RNHKGDT 139
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 192 VHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQ---VEVLIAKSPSLISV 248
+H AR G LD L+ LL + + + D +G+ LH A+ G VE L+ + S +
Sbjct: 74 IHDAARAGQLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 249 TNSHGDT 255
N GDT
Sbjct: 133 RNHKGDT 139
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 24/144 (16%)
Query: 234 QVEVLIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVS-GKIVEVKD 292
+V +L+A + + N+ G T LH+ ++++E L+ G V+ D
Sbjct: 29 EVRILMANGADVNAADNT-GTTPLHLAA----------YSGHLEIVEVLLKHGADVDASD 77
Query: 293 IINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASS 352
+ G T LHLA +VE+L+ ++N D +GMTPL L +
Sbjct: 78 VF------GYTPLHLAAYWG-HLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 353 EILIKQLISAGGISNCQDNVARNA 376
E+L+K G N QD + A
Sbjct: 130 EVLLKH----GADVNAQDKFGKTA 149
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N T N GRT LHLA + +VE+L+ ++N QD G T D+ + +E
Sbjct: 73 VNATGNTGRTPLHLAAWAD-HLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 354 ILIK 357
IL K
Sbjct: 131 ILQK 134
>pdb|1F52|A Chain A, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|B Chain B, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|C Chain C, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|D Chain D, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|E Chain E, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|F Chain F, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|G Chain G, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|H Chain H, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|I Chain I, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|J Chain J, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|K Chain K, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|L Chain L, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F1H|A Chain A, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|B Chain B, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|C Chain C, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|D Chain D, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|E Chain E, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|F Chain F, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|G Chain G, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|H Chain H, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|I Chain I, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|J Chain J, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|K Chain K, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|L Chain L, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1FPY|A Chain A, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|B Chain B, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|C Chain C, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|D Chain D, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|E Chain E, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|F Chain F, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|G Chain G, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|H Chain H, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|I Chain I, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|J Chain J, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|K Chain K, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|L Chain L, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1LGR|A Chain A, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|B Chain B, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|C Chain C, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|D Chain D, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|E Chain E, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|F Chain F, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|G Chain G, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|H Chain H, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|I Chain I, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|J Chain J, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|K Chain K, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|L Chain L, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|2LGS|A Chain A, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|B Chain B, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|C Chain C, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|D Chain D, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|E Chain E, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|F Chain F, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|G Chain G, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|H Chain H, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|I Chain I, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|J Chain J, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|K Chain K, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|L Chain L, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
Length = 468
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 577 INGTPQMNRKQTSFDKKLMNQYLCFGAQGLAGEDSI-NNLKPG 618
+ +P+ R + F N YLCF A +AG D I N + PG
Sbjct: 347 VVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPG 389
>pdb|2GLS|A Chain A, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|B Chain B, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|C Chain C, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|D Chain D, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|E Chain E, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|F Chain F, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|G Chain G, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|H Chain H, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|I Chain I, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|J Chain J, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|K Chain K, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|L Chain L, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
Length = 469
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 577 INGTPQMNRKQTSFDKKLMNQYLCFGAQGLAGEDSI-NNLKPG 618
+ +P+ R + F N YLCF A +AG D I N + PG
Sbjct: 348 VVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPG 390
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 287 IVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQ 345
+VE +N ++ G +HLA+ E ++V L P +L+ +D G+TPL+L +Q
Sbjct: 95 LVEHGADVNALDSTGSLPIHLAIREG-HSSVVSFL--APESDLHHRDASGLTPLELARQ 150
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 287 IVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQ 345
+VE +N ++ G +HLA+ E ++V L P +L+ +D G+TPL+L +Q
Sbjct: 93 LVEHGADVNALDSTGSLPIHLAIREG-HSSVVSFL--APESDLHHRDASGLTPLELARQ 148
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 192 VHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQ---VEVLIAKSPSLISV 248
+H AR G LD L+ LL + + + D +G+ LH A+ G VE L+ + S +
Sbjct: 74 IHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 249 TNSHGDT 255
N GDT
Sbjct: 133 RNHKGDT 139
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 179 SYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQ---V 235
+Y + E ++ +H A+ GNL LR+ L + V D GST L+ A G V
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIV 122
Query: 236 EVLIAKSPSLISVTNSHGDTFLH 258
E L + ++ N GDT LH
Sbjct: 123 EXLFTQPNIELNQQNKLGDTALH 145
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 192 VHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQ---VEVLIAKSPSLISV 248
+H AR G LD L+ LL + + + D +G+ LH A+ G VE L+ + S +
Sbjct: 74 IHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 249 TNSHGDT 255
N GDT
Sbjct: 133 RNHKGDT 139
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N + G T LHLA +VE+L+ ++N +D G+TPL L E
Sbjct: 73 VNAYDTLGSTPLHLAAHFG-HLEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHLEIVE 130
Query: 354 ILIKQLISAGGISNCQDNVARNA 376
+L+K G N QD + A
Sbjct: 131 VLLKY----GADVNAQDKFGKTA 149
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 282 LVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPL 340
LV I EV D ++ N+ G TALH AV +V+ L+ +N+N D +G TPL
Sbjct: 52 LVQRIIYEVDDP-SLPNDEGITALHNAVCAG-HTEIVKFLVQF-GVNVNAADSDGWTPL 107
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 282 LVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPL 340
LV I EV D ++ N+ G TALH AV +V+ L+ +N+N D +G TPL
Sbjct: 52 LVQRIIYEVDDP-SLPNDEGITALHNAVCAG-HTEIVKFLVQF-GVNVNAADSDGWTPL 107
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N +++G+T LHLA + +VE+L+ ++N
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKG-HLEIVEVLLK-HGADVN 74
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIK 357
D G TPL L + E+L+K
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLK 101
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 192 VHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVL--IAKSPSLISVT 249
+HAV +L +++ LL NV A GS+ LHSASGRG + ++ + +S + S+
Sbjct: 155 IHAV-ENNSLSMVQLLLQHGANVNAQM-YSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212
Query: 250 NSHGDTFL 257
N H DT L
Sbjct: 213 NCHNDTPL 220
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 277 QLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330
+L+E +G+ EV+ + +N + +G T LHLA + N +VE+L+ ++N
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA-AFNGHLEIVEVLLK-NGADVN 74
Query: 331 IQDGEGMTPLDLLKQHPRSASSEILIK 357
D GMTPL L E+L+K
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLK 101
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSE 353
+N ++ G T L LA +VE+L+ ++N D EG TPL L E
Sbjct: 73 VNAVDHAGMTPLRLAALFG-HLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVE 130
Query: 354 ILIKQLISAGGISNCQDNVARNA 376
+L+K G N QD + A
Sbjct: 131 VLLKN----GADVNAQDKFGKTA 149
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In Complex With Cobalt Ions
Length = 609
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 258 HMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGR 302
HM V RS FR + H Q VS K + +++++ NN R
Sbjct: 269 HMSVEDVRSYNFRHIGHHAATAPQSVSAKNIVASNLVSIRPNNKR 313
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 258 HMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGR 302
HM V RS FR + H Q VS K + +++++ NN R
Sbjct: 269 HMSVEDVRSYNFRHIGHHAATAPQSVSAKNIVASNLVSIRPNNKR 313
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 49/161 (30%)
Query: 197 RGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTF 256
R G D +R L+ + +V A D G T LH A+ RG +E+ + V HG
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEI--------VEVLLKHGAD- 72
Query: 257 LHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCN 316
+N +++ GRT LHLA +
Sbjct: 73 -------------------------------------VNASDSWGRTPLHLAATVG-HLE 94
Query: 317 LVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIK 357
+VE+L+ + ++N QD G T D+ + +EIL K
Sbjct: 95 IVEVLLEYGA-DVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|4ETM|A Chain A, Crystal Structure Of Yfkj From Bacillus Subtilis
pdb|4ETM|B Chain B, Crystal Structure Of Yfkj From Bacillus Subtilis
Length = 173
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 74 CRSSVARKLLHDCETKKGHNSLIR---AGYGGWLLYTAASAGDVRFVKELLQRDPL 126
CRS +A + D KKG I+ AG GGW + G +E+L+R+ +
Sbjct: 30 CRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEG----TQEILRREGI 81
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 277 QLMEQLVSGKIVEVKDII------NVTNNNGRTALHL-AVSENIQCNLVELLMTVPSINL 329
+L+E +G+ EV+ +I N +N G T LHL AVS +++ +VE+L+ ++
Sbjct: 17 KLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLE--IVEVLLK-HGADV 73
Query: 330 NIQDGEGMTPLDLLKQHPRSASSEILIK 357
+ D G TPL L E+L+K
Sbjct: 74 DAADVYGFTPLHLAAMTGHLEIVEVLLK 101
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 273 DHQIQLMEQLVSGKIVEVKDI------INVTNNNGRTALHLAVSENIQCNLVELLMTVPS 326
D L +G EVK + +N + +G T LHLA ++N +V+LL+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA-AKNGHAEIVKLLL-AKG 65
Query: 327 INLNIQDGEGMTPLDLLKQ 345
++N + +G TP L K+
Sbjct: 66 ADVNARSKDGNTPEHLAKK 84
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 246 ISVTNSH--GDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRT 303
I + N H +T LH+ V VD +Q SG + + G T
Sbjct: 160 IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-----NSGNL-------DKQTGKGST 207
Query: 304 ALH-LAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQL 359
ALH +++N +C L LL SI + + GE TPLD+ K+ E+L + L
Sbjct: 208 ALHYCCLTDNAEC-LKLLLRGKASIEIANESGE--TPLDIAKRLKHEHCEELLTQAL 261
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 287 IVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQH 346
+VE +NV + G +HLAV E +V L +L+ +D G+TPL+L Q
Sbjct: 93 LVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFL--AAESDLHRRDARGLTPLELALQR 149
Query: 347 PRSASSEILIKQLIS 361
+IL +++
Sbjct: 150 GAQDLVDILQGHMVA 164
>pdb|2WMP|B Chain B, Structure Of The E. Coli Chaperone Papd In Complex With
The Pilin Domain Of The Papgii Adhesin
Length = 123
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 496 QKYQKSVSLPNNKRILSLRSDFPSPDTKNKFTAGLMHG 533
Q S +P N R + LR+ P+ KF+ GL HG
Sbjct: 30 QTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHG 67
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 26/126 (20%)
Query: 245 LISVTNSHGDTFLHMVVAGFRSP--------GFRRVDHQIQ------LMEQLVSGK---- 286
++++ +S+G+T LH V+ P G +VD Q + ++ L + K
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 287 IVEVKDIINVTNNN------GRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPL 340
I V + + N N G+TAL LAVS + ++V+ L+ + ++N+QD +G T L
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHG-RVDVVKALLACEA-DVNVQDDDGSTAL 220
Query: 341 DLLKQH 346
+H
Sbjct: 221 MCACEH 226
>pdb|3ME0|B Chain B, Structure Of The E. Coli Chaperone Papd In Complex With
The Pilin Domain Of The Papgii Adhesin
Length = 128
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 496 QKYQKSVSLPNNKRILSLRSDFPSPDTKNKFTAGLMHG 533
Q S +P N R + LR+ P+ KF+ GL HG
Sbjct: 35 QTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHG 72
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 279 MEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMT 338
+E +V I DI N +N+G+TALH A + N V +L+ + N + QD + T
Sbjct: 130 IEGMVEDLITADADI-NAADNSGKTALHWAAAVN-NTEAVNILL-MHHANRDAQDDKDET 186
Query: 339 PLDLLKQHPRSASSEILIKQL 359
PL L + +S+ L+
Sbjct: 187 PLFLAAREGSYEASKALLDNF 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,176,401
Number of Sequences: 62578
Number of extensions: 721136
Number of successful extensions: 2279
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 2103
Number of HSP's gapped (non-prelim): 228
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)